BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017912
(364 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 159/350 (45%), Gaps = 46/350 (13%)
Query: 21 CSPSDXXXXXXXXXXXNEPYLGIFASW--TGDNCCTNWYGVSCDPTTR--RVTDISLRGE 76
C+P D P +SW T D C W GV CD T+ RV ++ L G
Sbjct: 3 CNPQDKQALLQIKKDLGNP--TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60
Query: 77 S-EDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDL 135
+ P + + ++ L L+ L I + G +P I + L L +
Sbjct: 61 NLPKPYPIPS------------SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
Query: 136 VGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPAD 195
+SG IPD + ++ L L+ + NA+SG +P S+ L +L + N++SG IP
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Query: 196 FGNL-KMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMXXXXXXX 254
+G+ K+ + + N+LTG IP + N+ LA +DLS N + G + G
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFG--------- 218
Query: 255 XXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPG 314
S+ ++L++N+L ++ V SK+ LDL N + G +P
Sbjct: 219 ---------------SDKNTQKIHLAKNSLAFDLGKVGLSKN-LNGLDLRNNRIYGTLPQ 262
Query: 315 SLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNPLRTC 364
L+ ++ L++S N+LCG IP G + S++ +N CLCG+PL C
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 142/299 (47%), Gaps = 29/299 (9%)
Query: 91 MTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGN 150
+ G I + + TL TL++ D+ ++G++PS +++ +L + L N+L+G+IP IG
Sbjct: 454 LEGEIPQELMYVKTLETLIL-DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 151 LQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPAD-FGNLKMLSRALLRG 209
L+ L +L L++N+ SG IP+ L SL LDL+ N +G IPA F ++ + G
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572
Query: 210 NKLTGSIPDSI-------GNMYRLADL-DLSMNQIS----------------GPIPDILG 245
+ D + GN+ + +N++S P D G
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 246 KMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSY 305
M G IP + S + ILNL N + G+IPD G LDLS
Sbjct: 633 SMMFLDMSYNMLS---GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689
Query: 306 NNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNPLRTC 364
N L G IP ++S+ + +DLS+N+L GPIP F+ + F +N LCG PL C
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 130/298 (43%), Gaps = 49/298 (16%)
Query: 88 SGYMTGSINPAICQ--LDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIP 145
S +G I P +CQ +TL L + + G +G++P +++ + L L L N LSG IP
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 146 DDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRA 205
+G+L KL L L N + GEIP L+ + +L+ L L N L+G+IP+ N L+
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 206 LLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMXXXXXXXXXXXXXXGKIP 265
L N+LTG IP IG + LA L LS N SG IP LG G IP
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 266 STLLSNTG---------------------------------MGI-------------LNL 279
+ + +G GI N+
Sbjct: 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615
Query: 280 SRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIP 337
+ GG+ F + M LD+SYN L G IP + S Y+ L+L HN + G IP
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 110/253 (43%), Gaps = 31/253 (12%)
Query: 116 ISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLV-R 174
+SG I++ L++L++ N+ G IP L+ L L+LA+N +GEIP L
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 175 LSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIP-DSIGNMYRLADLDLSM 233
+L LDLS N G +P FG+ +L L N +G +P D++ M L LDLS
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 234 NQISGPIPDILGKMXXX---------------------------XXXXXXXXXXXGKIPS 266
N+ SG +P+ L + GKIP
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 267 TLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLD 326
TL + + + L+LS N L G IP GS S L L N L+G IP L + L
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 327 LSHNHLCGPIPVG 339
L N L G IP G
Sbjct: 473 LDFNDLTGEIPSG 485
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 107/240 (44%), Gaps = 33/240 (13%)
Query: 128 ASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQ 187
++L+ LD+ GNKLSG I +L +LN++ N G IP + L SL++L L+ N+
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK 280
Query: 188 LSGKIPADF--GNLKMLSRALLRGNKLTGSIP-------------------------DSI 220
+G+IP DF G L+ L GN G++P D++
Sbjct: 281 FTGEIP-DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339
Query: 221 GNMYRLADLDLSMNQISGPIPDILGKMXXXXXXX-XXXXXXXGKIPSTLLSN--TGMGIL 277
M L LDLS N+ SG +P+ L + G I L N + L
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399
Query: 278 NLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIP 337
L N G IP + S ++L LS+N L G IP SL S + + L L N L G IP
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 109/244 (44%), Gaps = 43/244 (17%)
Query: 127 IASLRVLDLVGNKLSGK------IPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKH 180
+ SL VLDL N +SG + D G L+ L + + N +SG++ S R +L+
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVDVS--RCVNLEF 204
Query: 181 LDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPI 240
LD+S+N S IP G+ L + GNKL+G +I L L++S NQ GPI
Sbjct: 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263
Query: 241 PDILGKMXXXXXXXXXXXXXXGKIPSTL--LSNTGMGILNLSRNALGGNIPDVFGSKSY- 297
P + + G+IP L +T G L+LS N G +P FGS S
Sbjct: 264 PPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTG-LDLSGNHFYGAVPPFFGSCSLL 320
Query: 298 ------------------------FMALDLSYNNLKGPIPGSLSS-SAYIGHLDLSHNHL 332
LDLS+N G +P SL++ SA + LDLS N+
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Query: 333 CGPI 336
GPI
Sbjct: 381 SGPI 384
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 102/222 (45%), Gaps = 22/222 (9%)
Query: 128 ASLRVLDLVGNKLSGKIP--DDIGNLQKLTVLNLADNAVS--GEIPSSLVRLSSLKHLDL 183
ASL LDL N LSG + +G+ L LN++ N + G++ L +L+SL+ LDL
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 158
Query: 184 SNNQLSGKIPADF------GNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQIS 237
S N +SG + G LK L+ + GNK++G + + L LD+S N S
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDV--DVSRCVNLEFLDVSSNNFS 213
Query: 238 GPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDV-FGSKS 296
IP LG G + + T + +LN+S N G IP + S
Sbjct: 214 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 272
Query: 297 YFMALDLSYNNLKGPIPGSLSSSA-YIGHLDLSHNHLCGPIP 337
Y L L+ N G IP LS + + LDLS NH G +P
Sbjct: 273 Y---LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 142/299 (47%), Gaps = 29/299 (9%)
Query: 91 MTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGN 150
+ G I + + TL TL++ D+ ++G++PS +++ +L + L N+L+G+IP IG
Sbjct: 451 LEGEIPQELMYVKTLETLIL-DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 151 LQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPAD-FGNLKMLSRALLRG 209
L+ L +L L++N+ SG IP+ L SL LDL+ N +G IPA F ++ + G
Sbjct: 510 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 569
Query: 210 NKLTGSIPDSI-------GNMYRLADL-DLSMNQIS----------------GPIPDILG 245
+ D + GN+ + +N++S P D G
Sbjct: 570 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 246 KMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSY 305
M G IP + S + ILNL N + G+IPD G LDLS
Sbjct: 630 SMMFLDMSYNMLS---GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 686
Query: 306 NNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNPLRTC 364
N L G IP ++S+ + +DLS+N+L GPIP F+ + F +N LCG PL C
Sbjct: 687 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 745
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 130/298 (43%), Gaps = 49/298 (16%)
Query: 88 SGYMTGSINPAICQ--LDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIP 145
S +G I P +CQ +TL L + + G +G++P +++ + L L L N LSG IP
Sbjct: 374 SNNFSGPILPNLCQNPKNTLQELYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 432
Query: 146 DDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRA 205
+G+L KL L L N + GEIP L+ + +L+ L L N L+G+IP+ N L+
Sbjct: 433 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 492
Query: 206 LLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMXXXXXXXXXXXXXXGKIP 265
L N+LTG IP IG + LA L LS N SG IP LG G IP
Sbjct: 493 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Query: 266 STLLSNTG---------------------------------MGI-------------LNL 279
+ + +G GI N+
Sbjct: 553 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 612
Query: 280 SRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIP 337
+ GG+ F + M LD+SYN L G IP + S Y+ L+L HN + G IP
Sbjct: 613 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 110/253 (43%), Gaps = 31/253 (12%)
Query: 116 ISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLV-R 174
+SG I++ L++L++ N+ G IP L+ L L+LA+N +GEIP L
Sbjct: 232 LSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 175 LSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIP-DSIGNMYRLADLDLSM 233
+L LDLS N G +P FG+ +L L N +G +P D++ M L LDLS
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 234 NQISGPIPDILGKMXXX---------------------------XXXXXXXXXXXGKIPS 266
N+ SG +P+ L + GKIP
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 267 TLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLD 326
TL + + + L+LS N L G IP GS S L L N L+G IP L + L
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 327 LSHNHLCGPIPVG 339
L N L G IP G
Sbjct: 470 LDFNDLTGEIPSG 482
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 104/237 (43%), Gaps = 27/237 (11%)
Query: 128 ASLRVLDLVGNKLSGKIPDDIGNLQKLTVLN----------------------LADNAVS 165
++L+ LD+ GNKLSG I +L +LN LA+N +
Sbjct: 220 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFT 279
Query: 166 GEIPSSLV-RLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIP-DSIGNM 223
GEIP L +L LDLS N G +P FG+ +L L N +G +P D++ M
Sbjct: 280 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 339
Query: 224 YRLADLDLSMNQISGPIPDILGKMXXXXXXX-XXXXXXXGKIPSTLLSN--TGMGILNLS 280
L LDLS N+ SG +P+ L + G I L N + L L
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 399
Query: 281 RNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIP 337
N G IP + S ++L LS+N L G IP SL S + + L L N L G IP
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 109/244 (44%), Gaps = 43/244 (17%)
Query: 127 IASLRVLDLVGNKLSGK------IPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKH 180
+ SL VLDL N +SG + D G L+ L + + N +SG++ S R +L+
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVDVS--RCVNLEF 201
Query: 181 LDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPI 240
LD+S+N S IP G+ L + GNKL+G +I L L++S NQ GPI
Sbjct: 202 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 260
Query: 241 PDILGKMXXXXXXXXXXXXXXGKIPSTL--LSNTGMGILNLSRNALGGNIPDVFGSKSY- 297
P + + G+IP L +T G L+LS N G +P FGS S
Sbjct: 261 PPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTG-LDLSGNHFYGAVPPFFGSCSLL 317
Query: 298 ------------------------FMALDLSYNNLKGPIPGSLSS-SAYIGHLDLSHNHL 332
LDLS+N G +P SL++ SA + LDLS N+
Sbjct: 318 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 377
Query: 333 CGPI 336
GPI
Sbjct: 378 SGPI 381
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 102/222 (45%), Gaps = 22/222 (9%)
Query: 128 ASLRVLDLVGNKLSGKIP--DDIGNLQKLTVLNLADNAVS--GEIPSSLVRLSSLKHLDL 183
ASL LDL N LSG + +G+ L LN++ N + G++ L +L+SL+ LDL
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 155
Query: 184 SNNQLSGKIPADF------GNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQIS 237
S N +SG + G LK L+ + GNK++G + + L LD+S N S
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDV--DVSRCVNLEFLDVSSNNFS 210
Query: 238 GPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDV-FGSKS 296
IP LG G + + T + +LN+S N G IP + S
Sbjct: 211 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ 269
Query: 297 YFMALDLSYNNLKGPIPGSLSSSA-YIGHLDLSHNHLCGPIP 337
Y L L+ N G IP LS + + LDLS NH G +P
Sbjct: 270 Y---LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 8/124 (6%)
Query: 119 QLPSCITSIASLR-VLDLVGNKLS----GKIPDDIGNLQKLTVLNLADNAVSGEIPSSLV 173
QLP+ S+ S +LDL N LS P + NL L + + N +S E + V
Sbjct: 29 QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE---AFV 85
Query: 174 RLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSM 233
+ +L++LDLS+N L F +L+ L LL N + ++ +M +L L LS
Sbjct: 86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145
Query: 234 NQIS 237
NQIS
Sbjct: 146 NQIS 149
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 55/141 (39%)
Query: 98 AICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVL 157
A L L L ++D + P+ + L L L L P L L L
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134
Query: 158 NLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIP 217
L DNA+ + L +L HL L N++S F L L R LL N++ P
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Query: 218 DSIGNMYRLADLDLSMNQISG 238
+ ++ RL L L N +S
Sbjct: 195 HAFRDLGRLMTLYLFANNLSA 215
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 76/205 (37%), Gaps = 4/205 (1%)
Query: 128 ASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNN- 186
AS R+ L GN++S + LT+L L N ++ ++ L+ L+ LDLS+N
Sbjct: 33 ASQRIF-LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 187 QLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGK 246
QL PA F L L L L P + L L L N + +PD +
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFR 150
Query: 247 MXXXXXXXXXXXXXXGKIPSTLLSN-TGMGILNLSRNALGGNIPDVFGSKSYFMALDLSY 305
+P + L L +N + P F M L L
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 306 NNLKGPIPGSLSSSAYIGHLDLSHN 330
NNL +L+ + +L L+ N
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 55/141 (39%)
Query: 98 AICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVL 157
A L L L ++D + P+ + L L L L P L L L
Sbjct: 74 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 133
Query: 158 NLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIP 217
L DNA+ + L +L HL L N++S F L L R LL N++ P
Sbjct: 134 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 193
Query: 218 DSIGNMYRLADLDLSMNQISG 238
+ ++ RL L L N +S
Sbjct: 194 HAFRDLGRLMTLYLFANNLSA 214
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 76/205 (37%), Gaps = 4/205 (1%)
Query: 128 ASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNN- 186
AS R+ L GN++S + LT+L L N ++ ++ L+ L+ LDLS+N
Sbjct: 32 ASQRIF-LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 90
Query: 187 QLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGK 246
QL PA F L L L L P + L L L N + +PD +
Sbjct: 91 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFR 149
Query: 247 MXXXXXXXXXXXXXXGKIPSTLLSN-TGMGILNLSRNALGGNIPDVFGSKSYFMALDLSY 305
+P + L L +N + P F M L L
Sbjct: 150 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 209
Query: 306 NNLKGPIPGSLSSSAYIGHLDLSHN 330
NNL +L+ + +L L+ N
Sbjct: 210 NNLSALPTEALAPLRALQYLRLNDN 234
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
Query: 128 ASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQ 187
A LDL N L L LT L L N + +L+SL +L+LS NQ
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 188 LSGKIPADFGNLKMLSRALLRGNKLTGSIPDSI-GNMYRLADLDLSMNQISGPIPD 242
L F L L L N+L S+PD + + +L DL L NQ+ +PD
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VPD 141
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 126 SIASLRVLDLVGNKLSGKIPDDIGN-LQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLS 184
+ SL L L GNKL +P+ + N L LT LNL+ N + +L+ LK L L+
Sbjct: 50 ELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108
Query: 185 NNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSI 220
NQL F L L L N+L S+PD +
Sbjct: 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGV 143
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 132 VLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGK 191
++D G L+ +IP ++ + +T + L N + P + L+ +DLSNNQ+S
Sbjct: 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71
Query: 192 IPADFGNLKMLSRALLRGNKLTGSIPDSI 220
P F L+ L+ +L GNK+T +P S+
Sbjct: 72 APDAFQGLRSLNSLVLYGNKIT-ELPKSL 99
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 121 PSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKH 180
P + LR +DL N++S PD L+ L L L N ++ E+P SL
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQ 107
Query: 181 LDLSN----NQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMN 234
L L N N L D NL +LS L NKL + + + + L+ N
Sbjct: 108 LLLLNANKINCLRVDAFQDLHNLNLLS---LYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 127 IASLRVLDLVGNKLSGK-IPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSN 185
++SL VL + GN +PD L+ LT L+L+ + P++ LSSL+ L++++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 186 NQLSGKIPADFGNLKMLSRALLRGNKLTGSIP 217
NQL F L L + L N S P
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 98 AICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVL 157
A L LSTL++ I + ++SL+ L V L+ IG+L+ L L
Sbjct: 71 AYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 158 NLADNAV-SGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKML 202
N+A N + S ++P L++L+HLDLS+N++ D L +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 105 LSTLVIADWKGISGQ---LPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLAD 161
LS+L + G S Q LP T + +L LDL +L P +L L VLN+A
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 162 NAVSGEIPSSLV-RLSSLKHLDLSNN 186
N + +P + RL+SL+ + L N
Sbjct: 504 NQLKS-VPDGIFDRLTSLQKIWLHTN 528
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 132 VLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGK 191
++D G L+ +IP ++ + +T + L N + P + L+ +DLSNNQ+S
Sbjct: 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71
Query: 192 IPADFGNLKMLSRALLRGNKLTGSIPDSI 220
P F L+ L+ +L GNK+T +P S+
Sbjct: 72 APDAFQGLRSLNSLVLYGNKIT-ELPKSL 99
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 121 PSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKH 180
P + LR +DL N++S PD L+ L L L N ++ E+P SL
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQ 107
Query: 181 LDLSN----NQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMN 234
L L N N L D NL +LS L NKL + + + + L+ N
Sbjct: 108 LLLLNANKINXLRVDAFQDLHNLNLLS---LYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 104/269 (38%), Gaps = 7/269 (2%)
Query: 92 TGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNL 151
TG+ PA C ++ VI + ++ ++P+ I + R L+L N + D +L
Sbjct: 2 TGTSCPAACSCSNQASRVICTRRELA-EVPASIP--VNTRYLNLQENSIQVIRTDTFKHL 58
Query: 152 QKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNK 211
+ L +L L+ N V + L SL L+L +N+L+ F L L LR N
Sbjct: 59 RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP 118
Query: 212 LTGSIPDSIGNMY-RLADLDLSMNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLS 270
+ SIP N L LDL + I + + IP+ L +
Sbjct: 119 IE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN-LTA 176
Query: 271 NTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHN 330
+ L LS N L P F + L L + + + + L+LSHN
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 331 HLCG-PIPVGSPFDHLEASSFDSNDCLCG 358
+L P + +P LE + N C
Sbjct: 237 NLMSLPHDLFTPLHRLERVHLNHNPWHCN 265
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 103/269 (38%), Gaps = 7/269 (2%)
Query: 92 TGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNL 151
TG+ PA C ++ VI + + ++P+ I + R L+L N + D +L
Sbjct: 2 TGTSCPAACSCSNQASRVICTRREL-AEVPASIP--VNTRYLNLQENSIQVIRTDTFKHL 58
Query: 152 QKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNK 211
+ L +L L+ N V + L SL L+L +N+L+ F L L LR N
Sbjct: 59 RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP 118
Query: 212 LTGSIPDSIGNMY-RLADLDLSMNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLS 270
+ SIP N L LDL + I + + IP+ L +
Sbjct: 119 IE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN-LTA 176
Query: 271 NTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHN 330
+ L LS N L P F + L L + + + + L+LSHN
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 331 HLCG-PIPVGSPFDHLEASSFDSNDCLCG 358
+L P + +P LE + N C
Sbjct: 237 NLMSLPHDLFTPLHRLERVHLNHNPWHCN 265
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 126 SIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSN 185
S+ L VLDL N+L+ L L L + N ++ E+P + RL+ L HL L
Sbjct: 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQ 144
Query: 186 NQLSGKIPADFGNLKMLSRALLRGN 210
NQL F L L+ A L GN
Sbjct: 145 NQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 131 RVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLV-RLSSLKHLDLSNNQLS 189
++L L N+++ P +L L L L N + G +P + L+ L LDL NQL+
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 190 GKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQI 236
A F L L + NKLT +P I + L L L NQ+
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%)
Query: 131 RVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSG 190
+VL L N+++ P +L +LT LNLA N ++ +L+ L HL L NQL
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 191 KIPADFGNLKMLSRALLRGN 210
F NLK L+ L N
Sbjct: 103 IPMGVFDNLKSLTHIYLFNN 122
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 92/244 (37%), Gaps = 33/244 (13%)
Query: 121 PSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKH 180
P+ T + L +LD N +S P+ L L VLNL N +S + V ++L
Sbjct: 42 PTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTE 101
Query: 181 LDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIP----------------------- 217
LDL +N + F N K L + L N L+ +
Sbjct: 102 LDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALR 161
Query: 218 ----DSIGNMYRLADLDLSMNQISGPIP---DILGKMXXXXXXXXXXXXXXGKIPSTLLS 270
+ +GN L LDLS N + P +GK+ + LS
Sbjct: 162 SEELEFLGNS-SLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELS 220
Query: 271 NTGMGILNLSRNALGGNIPDVFGSKSY--FMALDLSYNNLKGPIPGSLSSSAYIGHLDLS 328
NT + L+L+ N L F + LDLSYNNL GS S + +L L
Sbjct: 221 NTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLE 280
Query: 329 HNHL 332
+N++
Sbjct: 281 YNNI 284
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 144 IPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLS 203
IPDD+ + +TVLNL N + P++ R S L LD N +S P L +L
Sbjct: 19 IPDDLPS--NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLK 76
Query: 204 RALLRGNKLTGSIPDSIGNMYRLADLDLSMNQI 236
L+ N+L+ + L +LDL N I
Sbjct: 77 VLNLQHNELSQISDQTFVFCTNLTELDLMSNSI 109
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 97 PAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTV 156
P++C + V+ +G+S ++P I S + R L+L+ N + D +L L V
Sbjct: 47 PSVCSCSNQFSKVVCTRRGLS-EVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEV 103
Query: 157 LNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSI 216
L L N++ + L+SL L+L +N L+ F L L LR N + SI
Sbjct: 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SI 162
Query: 217 PDSIGNMY-RLADLDL 231
P N L LDL
Sbjct: 163 PSYAFNRVPSLMRLDL 178
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 124 ITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDL 183
++ L+VL+L NK++ + L L VLNL+ N + S+ L + ++DL
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345
Query: 184 SNNQLSGKIPADFGNLKMLSRALLRGNKLTG-----SIPD 218
N ++ F L+ L LR N LT SIPD
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 127 IASLRVLDLVGNKLSG----KIPDDIGNLQKLTV-LNLADNAVSGEIPSSLVR-LSSLKH 180
+ L++L L N+ S + P + +L++L + N+ A E+ + LS L+
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484
Query: 181 LDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTG-SIPDSIGNMYRLADLDLSMNQISGP 239
L L++N L+ P F +L L L N+LT S D N L LD+S NQ+ P
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN---LEILDISRNQLLAP 541
Query: 240 IPDIL 244
PD+
Sbjct: 542 NPDVF 546
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 88/222 (39%), Gaps = 49/222 (22%)
Query: 121 PSCITSIASLRVLDLVGNKLSGKIPDD--IGNLQKLTVLNLADNAV-SGEIPSSLVRLSS 177
P + L L L LS + D NL+ LT L+L+ N + S + S +L+S
Sbjct: 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS 149
Query: 178 LKHLDLSNNQLSGKIPADFGNL--KMLSRALLRGNKLTGSIPDSIG---NMYR---LADL 229
LK +D S+NQ+ + L K LS L N L + G N +R L L
Sbjct: 150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209
Query: 230 DLSMNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIP 289
D+S N G DI G S +S + L L+ + +G
Sbjct: 210 DVSGN---GWTVDITGNF------------------SNAISKSQAFSLILAHHIMGAG-- 246
Query: 290 DVFGSKSYFMALDLSYNNLKGPIPGSLS--SSAYIGHLDLSH 329
FG ++N+K P + + + + + HLDLSH
Sbjct: 247 --FG-----------FHNIKDPDQNTFAGLARSSVRHLDLSH 275
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 122 SCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSS--LVRLSSLK 179
++ +LR+LDL +K+ PD L L L L +S + L +L
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126
Query: 180 HLDLSNNQL-SGKIPADFGNLKMLSRALLRGNKL 212
LDLS NQ+ S + FG L L N++
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 59/140 (42%), Gaps = 13/140 (9%)
Query: 101 QLDTLSTLVIADWK------GISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKL 154
+L L TL + D K G+ QL ++A LR L N+L P +L KL
Sbjct: 83 ELKNLETLWVTDNKLQALPIGVFDQL----VNLAELR---LDRNQLKSLPPRVFDSLTKL 135
Query: 155 TVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTG 214
T L+L N + +L+SLK L L NNQL F L L L N+L
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195
Query: 215 SIPDSIGNMYRLADLDLSMN 234
+ ++ +L L L N
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN 215
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 75/204 (36%), Gaps = 26/204 (12%)
Query: 128 ASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVR-LSSLKHLDLSNN 186
A + LDL NKLS L KL +L L DN + +P+ + + L +L+ L +++N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDN 95
Query: 187 QLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGK 246
+L F L L+ L N+L P ++ +L L L N++ + K
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155
Query: 247 MXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYN 306
+ T + L L N L F + L L N
Sbjct: 156 L------------------------TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 307 NLKGPIPGSLSSSAYIGHLDLSHN 330
LK G+ S + L L N
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 274 MGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLC 333
+ L L RN L P VF S + L L YN L+ G + L L +N L
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL- 169
Query: 334 GPIPVGSPFDHL 345
+P G+ FD L
Sbjct: 170 KRVPEGA-FDKL 180
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 120 LPS-CITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSL 178
LPS + LR+L L NKL L+ L L + DN + +L +L
Sbjct: 52 LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL 111
Query: 179 KHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSI-GNMYRLADLDLSMNQIS 237
L L NQL P F +L L+ L N+L S+P + + L +L L NQ+
Sbjct: 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK 170
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 9/125 (7%)
Query: 122 SCITSIASLRVLDLVGNKLS---GKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSL 178
S + + +L L L GN+L + D + NL++L L +N + +L++L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV---LVENQLQSLPDGVFDKLTNL 135
Query: 179 KHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSI-GNMYRLADLDLSMNQIS 237
+L+L++NQL F L L+ L N+L S+P+ + + +L DL L NQ+
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194
Query: 238 GPIPD 242
+PD
Sbjct: 195 S-VPD 198
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 19/177 (10%)
Query: 79 DPILVKAGRSGYMTGSINPAICQ--LDTLSTLVI--ADWKGISGQLPSCITSIASLRVLD 134
D + ++ S+ A+ Q L+++ ++ +D K + G I + ++R L
Sbjct: 15 DDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVRYLA 69
Query: 135 LVGNKLSGKIPDDIGNLQKLTVLN---LADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGK 191
L GNKL DI L++LT L L N + +L++LK L L NQL
Sbjct: 70 LGGNKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 192 IPADFGNLKMLSRALLRGNKLTGSIPDSI-GNMYRLADLDLSMNQISGPIPDILGKM 247
F L L+ L N+L S+P + + L +LDLS NQ+ + K+
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 77/190 (40%), Gaps = 37/190 (19%)
Query: 175 LSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSI-GNMYRLADLDLSM 233
L ++++L L N+L I A L L+ +L GN+L S+P+ + + L +L L
Sbjct: 62 LPNVRYLALGGNKLHD-ISA-LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVE 118
Query: 234 NQISGPIPD-ILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVF 292
NQ+ +PD + K+ T + LNL+ N L VF
Sbjct: 119 NQLQS-LPDGVFDKL------------------------TNLTYLNLAHNQLQSLPKGVF 153
Query: 293 GSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSF-- 350
+ LDLSYN L+ G + L L N L +P G FD L + +
Sbjct: 154 DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL-KSVPDGV-FDRLTSLQYIW 211
Query: 351 ---DSNDCLC 357
+ DC C
Sbjct: 212 LHDNPWDCTC 221
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 93 GSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQ 152
GS P C L T+V KG+ LP I + LD GN+ + +P ++ N +
Sbjct: 1 GSRCPTECT--CLDTVVRCSNKGLK-VLPKGIPRDVTELYLD--GNQFT-LVPKELSNYK 54
Query: 153 KLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKL 212
LT+++L++N +S S ++ L L LS N+L P F LK L L GN +
Sbjct: 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Query: 213 TGSIPDSIGNMYRLADLDLSMN 234
+ + ++ L+ L + N
Sbjct: 115 SVVPEGAFNDLSALSHLAIGAN 136
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%)
Query: 168 IPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLA 227
+P L L +DLSNN++S F N+ L +L N+L P + + L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 228 DLDLSMNQIS 237
L L N IS
Sbjct: 106 LLSLHGNDIS 115
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 39/89 (43%)
Query: 156 VLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGS 215
VL L DN ++ P RL+ L LDL NNQL+ F L L++ L N+L
Sbjct: 34 VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 216 IPDSIGNMYRLADLDLSMNQISGPIPDIL 244
+ N+ L + L N DIL
Sbjct: 94 PRGAFDNLRSLTHIWLLNNPWDCACSDIL 122
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 128 ASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQ 187
+ +VL L N+++ P L +LT L+L +N ++ +L+ L L L++NQ
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 188 LSGKIPADFGNLKMLSRALLRGN 210
L F NL+ L+ L N
Sbjct: 90 LKSIPRGAFDNLRSLTHIWLLNN 112
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 39/89 (43%)
Query: 156 VLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGS 215
VL L DN ++ P RL+ L LDL NNQL+ F L L++ L N+L
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 216 IPDSIGNMYRLADLDLSMNQISGPIPDIL 244
+ N+ L + L N DIL
Sbjct: 94 PRGAFDNLKSLTHIWLLNNPWDCACSDIL 122
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 128 ASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQ 187
+ +VL L N+++ P L +LT L+L +N ++ +L+ L L L++NQ
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 188 LSGKIPADFGNLKMLSRALLRGN 210
L F NLK L+ L N
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 119 QLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSL 178
+LP+ I ++++LRVLDL N+L+ +P ++G+ +L DN V+ +P L +L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNL 318
Query: 179 KHLDLSNNQLSGKIPADFGNLKMLSRALLRG 209
+ L + N L + LK+L+ + G
Sbjct: 319 QFLGVEGNPLEKQF------LKILTEKSVTG 343
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 154 LTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLT 213
LT L L N+++ E+P+ + LS+L+ LDLS+N+L+ +PA+ G+ L N +T
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Query: 214 GSIPDSIGNMYRLADLDLSMNQISGPIPDILGK 246
++P GN+ L L + N + IL +
Sbjct: 307 -TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 98 AICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVL 157
A L LSTL++ I + ++SL+ L V L+ IG+L+ L L
Sbjct: 72 AYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 130
Query: 158 NLADNAV-SGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSI 216
N+A N + S ++P L++L+HLDLS+N++ D L + L + +
Sbjct: 131 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 190
Query: 217 ----PDSIGNMYRLADLDLSMNQISGPIPD 242
P + + RL +L L NQ+ +PD
Sbjct: 191 NFIQPGAFKEI-RLKELALDTNQLKS-VPD 218
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 48/133 (36%), Gaps = 19/133 (14%)
Query: 96 NPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLT 155
N I L TL L +A S +LP +++ +L LDL NK+ D+ L ++
Sbjct: 118 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 177
Query: 156 V-----------LNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSR 204
+ +N EI LK L L NQL F L L +
Sbjct: 178 LLNLSLDLSLNPMNFIQPGAFKEI--------RLKELALDTNQLKSVPDGIFDRLTSLQK 229
Query: 205 ALLRGNKLTGSIP 217
L N S P
Sbjct: 230 IWLHTNPWDCSCP 242
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 39/89 (43%)
Query: 156 VLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGS 215
VL L DN ++ P RL+ L LDL NNQL+ F L L++ L N+L
Sbjct: 42 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 101
Query: 216 IPDSIGNMYRLADLDLSMNQISGPIPDIL 244
+ N+ L + L N DIL
Sbjct: 102 PRGAFDNLKSLTHIWLLNNPWDCACSDIL 130
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 128 ASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQ 187
+ +VL L N+++ P L +LT L+L +N ++ +L+ L L L++NQ
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 188 LSGKIPADFGNLKMLSRALLRGN 210
L F NLK L+ L N
Sbjct: 98 LKSIPRGAFDNLKSLTHIWLLNN 120
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 130 LRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLS 189
++VLDL N++ IP D+ +LQ L LN+A N + RL+SL+++ L +N
Sbjct: 452 VKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
Query: 190 GKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNM 223
P ++ LS + NK +G + +S G++
Sbjct: 511 CTCPG----IRYLSEWI---NKHSGVVRNSAGSV 537
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 124 ITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDL 183
I+ ++ LRVL L N++ Q L L+++ N + S ++SL+HLDL
Sbjct: 72 ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDL 128
Query: 184 SNNQLSG-KIPADFGNLKMLS 203
S N + +FGNL L+
Sbjct: 129 SFNDFDVLPVCKEFGNLTKLT 149
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 98 AICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVL 157
A L LSTL++ I + ++SL+ L V L+ IG+L+ L L
Sbjct: 73 AYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 131
Query: 158 NLADNAV-SGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSI 216
N+A N + S ++P L++L+HLDLS+N++ D L + L + +
Sbjct: 132 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 191
Query: 217 ----PDSIGNMYRLADLDLSMNQISGPIPD 242
P + + RL +L L NQ+ +PD
Sbjct: 192 NFIQPGAFKEI-RLKELALDTNQLKS-VPD 219
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 48/133 (36%), Gaps = 19/133 (14%)
Query: 96 NPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLT 155
N I L TL L +A S +LP +++ +L LDL NK+ D+ L ++
Sbjct: 119 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 178
Query: 156 V-----------LNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSR 204
+ +N EI LK L L NQL F L L +
Sbjct: 179 LLNLSLDLSLNPMNFIQPGAFKEI--------RLKELALDTNQLKSVPDGIFDRLTSLQK 230
Query: 205 ALLRGNKLTGSIP 217
L N S P
Sbjct: 231 IWLHTNPWDCSCP 243
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 98 AICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVL 157
A L LSTL++ I + ++SL+ L V L+ IG+L+ L L
Sbjct: 71 AYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 158 NLADNAV-SGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSI 216
N+A N + S ++P L++L+HLDLS+N++ D L + L + +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189
Query: 217 ----PDSIGNMYRLADLDLSMNQISGPIPD 242
P + + RL +L L NQ+ +PD
Sbjct: 190 NFIQPGAFKEI-RLKELALDTNQLKS-VPD 217
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 48/133 (36%), Gaps = 19/133 (14%)
Query: 96 NPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLT 155
N I L TL L +A S +LP +++ +L LDL NK+ D+ L ++
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
Query: 156 V-----------LNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSR 204
+ +N EI LK L L NQL F L L +
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEI--------RLKELALDTNQLKSVPDGIFDRLTSLQK 228
Query: 205 ALLRGNKLTGSIP 217
L N S P
Sbjct: 229 IWLHTNPWDCSCP 241
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 98 AICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVL 157
A L LSTL++ I + ++SL+ L V L+ IG+L+ L L
Sbjct: 72 AYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 130
Query: 158 NLADNAV-SGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSI 216
N+A N + S ++P L++L+HLDLS+N++ D L + L + +
Sbjct: 131 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 190
Query: 217 ----PDSIGNMYRLADLDLSMNQISGPIPD 242
P + + RL +L L NQ+ +PD
Sbjct: 191 NFIQPGAFKEI-RLKELALDTNQLKS-VPD 218
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 48/133 (36%), Gaps = 19/133 (14%)
Query: 96 NPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLT 155
N I L TL L +A S +LP +++ +L LDL NK+ D+ L ++
Sbjct: 118 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 177
Query: 156 V-----------LNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSR 204
+ +N EI LK L L NQL F L L +
Sbjct: 178 LLNLSLDLSLNPMNFIQPGAFKEI--------RLKELALDTNQLKSVPDGIFDRLTSLQK 229
Query: 205 ALLRGNKLTGSIP 217
L N S P
Sbjct: 230 IWLHTNPWDCSCP 242
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 181 LDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPI 240
LDL NN+++ DF NLK L +L NK++ P + + +L L LS NQ+ +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-L 115
Query: 241 PDILGK 246
P+ + K
Sbjct: 116 PEKMPK 121
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 132 VLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLS-- 189
+LDL NK++ D NL+ L L L +N +S P + L L+ L LS NQL
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 190 -GKIPADFGNLKMLSRALLRGNK 211
K+P L++ + + K
Sbjct: 116 PEKMPKTLQELRVHENEITKVRK 138
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 81 ILVKAGRSGYMTGSI-NPAICQLDTLSTLVIADWK--GISGQLPSCITSIASLRVLDLVG 137
I+V+ G + + I N A + LS + IAD I LP +T L L G
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE------LHLDG 201
Query: 138 NKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFG 197
NK++ + L L L L+ N++S SL L+ L L+NN+L K+P
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260
Query: 198 NLKMLSRALLRGNKLTG 214
+ K + L N ++
Sbjct: 261 DHKYIQVVYLHNNNISA 277
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 123 CITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLD 182
C + ++ DL K+ +P D +L+L +N ++ L +L L
Sbjct: 29 CQCHLRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLI 82
Query: 183 LSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQIS 237
L NN++S P F L L R L N+L +P+ + L +L + N+I+
Sbjct: 83 LINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT--LQELRVHENEIT 134
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 181 LDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPI 240
LDL NN+++ DF NLK L +L NK++ P + + +L L LS NQ+ +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-L 115
Query: 241 PDILGK 246
P+ + K
Sbjct: 116 PEKMPK 121
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 132 VLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLS-- 189
+LDL NK++ D NL+ L L L +N +S P + L L+ L LS NQL
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 190 -GKIPADFGNLKMLSRALLRGNK 211
K+P L++ + + K
Sbjct: 116 PEKMPKTLQELRVHENEITKVRK 138
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 81 ILVKAGRSGYMTGSI-NPAICQLDTLSTLVIADWK--GISGQLPSCITSIASLRVLDLVG 137
I+V+ G + + I N A + LS + IAD I LP +T L L G
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE------LHLDG 201
Query: 138 NKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFG 197
NK++ + L L L L+ N++S SL L+ L L+NN+L K+P
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260
Query: 198 NLKMLSRALLRGNKLTG 214
+ K + L N ++
Sbjct: 261 DHKYIQVVYLHNNNISA 277
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 123 CITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLD 182
C + ++ DL K+ +P D +L+L +N ++ L +L L
Sbjct: 29 CQCHLRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLI 82
Query: 183 LSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQIS 237
L NN++S P F L L R L N+L +P+ + L +L + N+I+
Sbjct: 83 LINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT--LQELRVHENEIT 134
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 157 LNLADNAVSGEIPSSLV---RLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLT 213
+N+ + VSG ++ ++S HLD SNN L+ + + G+L L +L+ N+L
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361
Query: 214 --GSIPDSIGNMYRLADLDLSMNQIS 237
I + M L LD+S N +S
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVS 387
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 144 IPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLS 203
+P D+ QK T+LN++ N +S S ++ LS L+ L +S+N++ + F + L
Sbjct: 15 VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72
Query: 204 RALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISG-PIPDILGKM 247
L NKL + S L LDLS N PI G M
Sbjct: 73 YLDLSHNKL---VKISCHPTVNLKHLDLSFNAFDALPICKEFGNM 114
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 153 KLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKL 212
++ VL+L N + IP +V+L +L+ L++++NQL F L L + L N
Sbjct: 422 RIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Query: 213 TGSIP 217
S P
Sbjct: 481 DCSCP 485
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 130 LRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLV-RLSSLKHLDLSNN 186
++VLDL NK+ IP + L+ L LN+A N + +P + RL+SL+ + L N
Sbjct: 423 IKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTN 478
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 266 STLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHL 325
S +LS + + IL +S N + VF LDLS+N L + S + + HL
Sbjct: 39 SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL---VKISCHPTVNLKHL 95
Query: 326 DLSHNHLCGPIPVGSPFDHLEASSF 350
DLS N +P+ F ++ F
Sbjct: 96 DLSFNAF-DALPICKEFGNMSQLKF 119
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 99/243 (40%), Gaps = 34/243 (13%)
Query: 121 PSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKH 180
P ++ L VL L N LS N KLT L++++N + + +SL++
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 169
Query: 181 LDLSNNQLSGKIPADFGNLKMLSRALLRGNKL-TGSIPDSIGNMYRLADLDLSMNQIS-- 237
L LS+N+L+ D + L A + N L T +IP ++ +LD S N I+
Sbjct: 170 LQLSSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIPIAV------EELDASHNSINVV 220
Query: 238 -GPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKS 296
GP+ L + + LL+ G+ ++LS N L + F
Sbjct: 221 RGPVNVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272
Query: 297 YFMALDLSYN-----NLKG-PIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSF 350
L +S N NL G PIP + LDLSHNHL FD LE
Sbjct: 273 RLERLYISNNRLVALNLYGQPIPT-------LKVLDLSHNHLLHVERNQPQFDRLENLYL 325
Query: 351 DSN 353
D N
Sbjct: 326 DHN 328
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 56/150 (37%)
Query: 88 SGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDD 147
S + G A L L L ++D + P+ + L L L L P
Sbjct: 64 SNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGL 123
Query: 148 IGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALL 207
L L L L DN + ++ L +L HL L N++ F L L R LL
Sbjct: 124 FRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLL 183
Query: 208 RGNKLTGSIPDSIGNMYRLADLDLSMNQIS 237
N + P + ++ RL L L N +S
Sbjct: 184 HQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 128 ASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNN- 186
AS + + L GN++S + + LT+L L NA++G ++ L+ L+ LDLS+N
Sbjct: 31 ASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNA 90
Query: 187 QLSGKIPADFGNLKML 202
QL P F L L
Sbjct: 91 QLRVVDPTTFRGLGHL 106
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 120 LPSCITSIASLRVLDLVGNKLSGKIPDDI---GNLQKLTVLNLADNAVSGEIPSSLVRLS 176
+PS +T A+++ LDL NK++ D+ NLQ L + + N + G+ + L
Sbjct: 46 IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD---AFYSLG 100
Query: 177 SLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGN 210
SL+HLDLS+N LS + FG L L L GN
Sbjct: 101 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 120 LPSCITSIASLRVLDLVGNKLSGKIPDDI---GNLQKLTVLNLADNAVSGEIPSSLVRLS 176
+PS +T A+++ LDL NK++ D+ NLQ L + + N + G+ + L
Sbjct: 20 IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD---AFYSLG 74
Query: 177 SLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGN 210
SL+HLDLS+N LS + FG L L L GN
Sbjct: 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 98 AICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVL 157
A L LSTL++ I + ++SL+ L + L+ IG+L+ L L
Sbjct: 73 AYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKEL 131
Query: 158 NLADNAV-SGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSI 216
N+A N + S ++P L++L+HLDLS+N++ D L + L + +
Sbjct: 132 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 191
Query: 217 ----PDSIGNMYRLADLDLSMNQISGPIPD 242
P + + RL +L L NQ+ +PD
Sbjct: 192 NFIQPGAFKEI-RLKELALDTNQLKS-VPD 219
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 48/133 (36%), Gaps = 19/133 (14%)
Query: 96 NPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLT 155
N I L TL L +A S +LP +++ +L LDL NK+ D+ L ++
Sbjct: 119 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 178
Query: 156 V-----------LNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSR 204
+ +N EI LK L L NQL F L L +
Sbjct: 179 LLNLSLDLSLNPMNFIQPGAFKEI--------RLKELALDTNQLKSVPDGIFDRLTSLQK 230
Query: 205 ALLRGNKLTGSIP 217
L N S P
Sbjct: 231 IWLHTNPWDCSCP 243
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 122 SCITSIASLRVLDLVGNKLS---GKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSL 178
S + + +L L L GN+L + D + NL++L L +N + +L++L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV---LVENQLQSLPDGVFDKLTNL 135
Query: 179 KHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSI-GNMYRLADLDLSMNQIS 237
+L L +NQL F L L+R L N+L S+P+ + + +L L L+ NQ+
Sbjct: 136 TYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL-QSLPEGVFDKLTQLKQLSLNDNQLK 194
Query: 238 GPIPD 242
+PD
Sbjct: 195 S-VPD 198
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 19/177 (10%)
Query: 79 DPILVKAGRSGYMTGSINPAICQ--LDTLSTLVI--ADWKGISGQLPSCITSIASLRVLD 134
D + ++ S+ A+ Q L+++ ++ +D K + G I + ++R L
Sbjct: 15 DDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVRYLA 69
Query: 135 LVGNKLSGKIPDDIGNLQKLTVLN---LADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGK 191
L GNKL DI L++LT L L N + +L++LK L L NQL
Sbjct: 70 LGGNKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 192 IPADFGNLKMLSRALLRGNKLTGSIPDSI-GNMYRLADLDLSMNQISGPIPDILGKM 247
F L L+ L N+L S+P + + L LDL NQ+ + K+
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQL-QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKL 180
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 98 AICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVL 157
A L LSTL++ I + ++SL+ L V L+ IG+L+ L L
Sbjct: 95 AYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 153
Query: 158 NLADNAV-SGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKML 202
N+A N + S ++P L++L+HLDLS+N++ D L +
Sbjct: 154 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 106/287 (36%), Gaps = 64/287 (22%)
Query: 51 NCCTNWYGVS-CDPTTRRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLV 109
NC TN S T RV D S + LV + T +L +L L
Sbjct: 303 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT-------LKLKSLKRLT 355
Query: 110 IADWKGISGQLPSCITSIASLRVLDLVGNKLSGK---IPDDIGNLQKLTVLNLADNAVSG 166
KG G S + + SL LDL N LS K D G + L L+L+ N V
Sbjct: 356 FTSNKG--GNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTI-SLKYLDLSFNGVIT 411
Query: 167 EIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRL 226
+ S+ + L L+HLD + NLK +S S+ S+ N L
Sbjct: 412 -MSSNFLGLEQLEHLDFQH-----------SNLKQMSEF---------SVFLSLRN---L 447
Query: 227 ADLDLSMNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGG 286
LD+S I + + + +L ++ N+
Sbjct: 448 IYLDISHTHTRVAFNGIFNGL------------------------SSLEVLKMAGNSFQE 483
Query: 287 N-IPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHL 332
N +PD+F LDLS L+ P + +S + + L++SHN+
Sbjct: 484 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 105 LSTLVIADWKGISGQ---LPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLAD 161
LS+L + G S Q LP T + +L LDL +L P +L L VLN++
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 162 NAVSGEIPSSLVRLSSLKHLDLSNNQL 188
N L+SL+ LD S N +
Sbjct: 528 NNFFSLDTFPYKCLNSLQVLDYSLNHI 554
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 98 AICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVL 157
A L LSTL++ I + ++SL+ L V L+ IG+L+ L L
Sbjct: 71 AYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 158 NLADNAV-SGEIPSSLVRLSSLKHLDLSNNQLSGKIPAD 195
N+A N + S ++P L++L+HLDLS+N++ D
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 105/287 (36%), Gaps = 64/287 (22%)
Query: 51 NCCTNWYGVS-CDPTTRRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLV 109
NC TN S T RV D S + LV + T +L +L L
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT-------LKLKSLKRLT 331
Query: 110 IADWKGISGQLPSCITSIASLRVLDLVGNKLSGK---IPDDIGNLQKLTVLNLADNAVSG 166
KG G S + + SL LDL N LS K D G L L+L+ N V
Sbjct: 332 FTSNKG--GNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVIT 387
Query: 167 EIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRL 226
+ S+ + L L+HLD + NLK +S S+ S+ N L
Sbjct: 388 -MSSNFLGLEQLEHLDFQH-----------SNLKQMSEF---------SVFLSLRN---L 423
Query: 227 ADLDLSMNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGG 286
LD+S I + + + +L ++ N+
Sbjct: 424 IYLDISHTHTRVAFNGIFNGL------------------------SSLEVLKMAGNSFQE 459
Query: 287 N-IPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHL 332
N +PD+F LDLS L+ P + +S + + L++SHN+
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 105 LSTLVIADWKGISGQ---LPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLAD 161
LS+L + G S Q LP T + +L LDL +L P +L L VLN++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 162 NAVSGEIPSSLVRLSSLKHLDLSNNQL 188
N L+SL+ LD S N +
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHI 530
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 102/244 (41%), Gaps = 36/244 (14%)
Query: 121 PSCITSIASLRVLDLVGNKLSGKIPDDI-GNLQKLTVLNLADNAVSGEIPSSLVRLSSLK 179
P ++ L VL L N LS +P I N KLT L++++N + + +SL+
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174
Query: 180 HLDLSNNQLSGKIPADFGNLKMLSRALLRGNKL-TGSIPDSIGNMYRLADLDLSMNQIS- 237
+L LS+N+L+ D + L A + N L T +IP ++ +LD S N I+
Sbjct: 175 NLQLSSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIPIAV------EELDASHNSINV 225
Query: 238 --GPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSK 295
GP+ L + + LL+ G+ ++LS N L + F
Sbjct: 226 VRGPVNVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277
Query: 296 SYFMALDLSYN-----NLKG-PIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASS 349
L +S N NL G PIP + LDLSHNHL FD LE
Sbjct: 278 QRLERLYISNNRLVALNLYGQPIPT-------LKVLDLSHNHLLHVERNQPQFDRLENLY 330
Query: 350 FDSN 353
D N
Sbjct: 331 LDHN 334
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 128 ASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQ 187
A LDL L+ L KLT LNL N + L+ L L L+NNQ
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 188 LSGKIPADFGNLKMLSRALLRGNKLTGSIPDSI-GNMYRLADLDLSMNQIS 237
L+ F +L L + L GN+L S+P + + +L +L L+ NQ+
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ 144
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 16/147 (10%)
Query: 105 LSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAV 164
L+TL A ++G++ L L+L N+L +L +L L LA+N +
Sbjct: 47 LATLSDATFRGLT-----------KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 165 SGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMY 224
+ L+ L L L NQL F L L L N+L + +
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 225 RLADLDLSMNQISGPIP----DILGKM 247
L L LS NQ+ +P D LGK+
Sbjct: 156 NLQTLSLSTNQLQS-VPHGAFDRLGKL 181
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 47/122 (38%), Gaps = 10/122 (8%)
Query: 101 QLDTLSTLVIADWKGI------SGQLPS----CITSIASLRVLDLVGNKLSGKIPDDIGN 150
QL TLS V D + + QL S + L L L GN+L
Sbjct: 70 QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129
Query: 151 LQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGN 210
L KL L L N + + +L++L+ L LS NQL F L L L GN
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Query: 211 KL 212
+
Sbjct: 190 QF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 128 ASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQ 187
A LDL L+ L KLT LNL N + L+ L L L+NNQ
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 188 LSGKIPADFGNLKMLSRALLRGNKLTGSIPDSI-GNMYRLADLDLSMNQIS 237
L+ F +L L + L GN+L S+P + + +L +L L+ NQ+
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ 144
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 16/147 (10%)
Query: 105 LSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAV 164
L+TL A ++G++ L L+L N+L +L +L L LA+N +
Sbjct: 47 LATLSDATFRGLT-----------KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 165 SGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMY 224
+ L+ L L L NQL F L L L N+L + +
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 225 RLADLDLSMNQISGPIP----DILGKM 247
L L LS NQ+ +P D LGK+
Sbjct: 156 NLQTLSLSTNQLQ-SVPHGAFDRLGKL 181
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 47/122 (38%), Gaps = 10/122 (8%)
Query: 101 QLDTLSTLVIADWKGI------SGQLPS----CITSIASLRVLDLVGNKLSGKIPDDIGN 150
QL TLS V D + + QL S + L L L GN+L
Sbjct: 70 QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129
Query: 151 LQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGN 210
L KL L L N + + +L++L+ L LS NQL F L L L GN
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Query: 211 KL 212
+
Sbjct: 190 QF 191
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 114 KGISGQL---PSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPS 170
KG SG L PS +T +++ LDL N+++ D+ L L L N ++
Sbjct: 37 KGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94
Query: 171 SLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGN 210
S L SL+HLDLS N LS + F L L+ L GN
Sbjct: 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 168 IPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLA 227
IPS L ++K LDLSNN+++ +D L +L N + DS ++ L
Sbjct: 46 IPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 228 DLDLSMNQISG 238
LDLS N +S
Sbjct: 104 HLDLSYNYLSN 114
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 114 KGISGQL---PSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPS 170
KG SG L PS +T +++ LDL N+++ D+ L L L N ++
Sbjct: 11 KGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 68
Query: 171 SLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGN 210
S L SL+HLDLS N LS + F L L+ L GN
Sbjct: 69 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 108
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 168 IPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLA 227
IPS L ++K LDLSNN+++ +D L +L N + DS ++ L
Sbjct: 20 IPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 77
Query: 228 DLDLSMNQISG 238
LDLS N +S
Sbjct: 78 HLDLSYNYLSN 88
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 120 LPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLK 179
L S S +++ LDL GN LS D+ KL +LNL+ N + + L LS+L+
Sbjct: 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLR 83
Query: 180 HLDLSNN 186
LDL+NN
Sbjct: 84 TLDLNNN 90
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 116 ISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRL 175
++G P+ + ++ L L NK+ L +L LNL DN +S +P S L
Sbjct: 66 LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125
Query: 176 SSLKHLDLSNN 186
+SL L+L++N
Sbjct: 126 NSLTSLNLASN 136
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 132 VLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSS--LVRLSSLKHLDLSNNQLS 189
+D G L +IP DI T L L DN + G I S RL L L+L NQL+
Sbjct: 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 190 GKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIP 241
G P F + L NK+ +++L L+L NQIS +P
Sbjct: 68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 96/235 (40%), Gaps = 61/235 (25%)
Query: 134 DLVGNKLS-GKIPDDIGNLQKLTVLNLADNAVSG--EIPSSLVRL--------------S 176
+L N+L+ +PD++ ++TVL + NA+ E+P+SL L +
Sbjct: 63 ELQLNRLNLSSLPDNLP--PQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPA 120
Query: 177 SLKHLDLSNNQLSG--KIPA--DFGN---------------LKMLSRALLRGNKLTG--S 215
SLKHLD+ NNQL+ ++PA ++ N L++LS +R N+LT
Sbjct: 121 SLKHLDVDNNQLTXLPELPALLEYINADNNQLTXLPELPTSLEVLS---VRNNQLTFLPE 177
Query: 216 IPDSIGNMYRLADLDLSMNQISG--PIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTG 273
+P+S L LD+S N + +P IP +LS
Sbjct: 178 LPES------LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDP 231
Query: 274 MGILNLSRNALGGNI----------PDVFGSKSYFMALDLSYNNLKGPIPGSLSS 318
+ L N L I PD G + YF D N L P+ ++++
Sbjct: 232 TCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSXSDGQQNTLHRPLADAVTA 286
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 32/230 (13%)
Query: 107 TLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVS- 165
T + + KG++ +P+ I S A+ L+L NKL L +LT L+L+ N +S
Sbjct: 10 TEIRCNSKGLTS-VPTGIPSSAT--RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66
Query: 166 -GEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIG-NM 223
G S +SLK+LDLS N + + ++F L+ L + + L S+ ++
Sbjct: 67 KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125
Query: 224 YRLADLDLSMNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNA 283
L LD+S I + + + +L ++ N+
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGL------------------------SSLEVLKMAGNS 161
Query: 284 LGGN-IPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHL 332
N +PD+F LDLS L+ P + +S + + L++SHN+
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 105 LSTLVIADWKGISGQ---LPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLAD 161
LS+L + G S Q LP T + +L LDL +L P +L L VLN++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 162 NAVSGEIPSSLVRLSSLKHLDLSNNQL 188
N L+SL+ LD S N +
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHI 235
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 120 LPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLK 179
L S S +++ LDL GN LS D+ KL +LNL+ N + + L LS+L+
Sbjct: 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLR 83
Query: 180 HLDLSNN 186
LDL+NN
Sbjct: 84 TLDLNNN 90
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 110/265 (41%), Gaps = 9/265 (3%)
Query: 97 PAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTV 156
P++C + VI K + ++P I++ + R+L+L N++ + +L+ L +
Sbjct: 36 PSVCSCSNQFSKVICVRKNLR-EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEI 92
Query: 157 LNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSI 216
L L+ N + + L++L L+L +N+L+ F L L LR N + SI
Sbjct: 93 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SI 151
Query: 217 PD-SIGNMYRLADLDLSMNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMG 275
P + + L LDL + I + + +IP+ L +
Sbjct: 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLD 210
Query: 276 ILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLC-G 334
L+LS N L P F + L + + ++ + + + ++L+HN+L
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270
Query: 335 PIPVGSPFDHLEASSFDSN--DCLC 357
P + +P HLE N +C C
Sbjct: 271 PHDLFTPLHHLERIHLHHNPWNCNC 295
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 127 IASLRVLDLVGNKLSGKIPDDI-GNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSN 185
+ L L L N++ +PD + L KLT+L L +N + +L+ LK L L
Sbjct: 51 LTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT 109
Query: 186 NQLSGKIPADFGNLKMLSRALLRGNKLTGSIP 217
NQL F L L + L N S P
Sbjct: 110 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 155 TVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTG 214
T L L N + +L+ L L LS NQ+ F L L+ L NKL
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ- 89
Query: 215 SIPDSI-GNMYRLADLDLSMNQISGPIPD 242
S+P+ + + +L +L L NQ+ +PD
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLKS-VPD 117
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 107 TLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSG 166
T + + KG++ +P+ I S A+ L+L NKL L +LT L+L+ N +
Sbjct: 10 TEIRCNSKGLTS-VPTGIPSSAT--RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS 66
Query: 167 EIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSI 220
+L+ L L L N+L F L L L N+L S+PD I
Sbjct: 67 LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGI 119
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Query: 118 GQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSS 177
G S S V D KL+ ++PDD+ +TVLNL N + ++ R S
Sbjct: 4 GSASSTTKCTVSHEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQ 60
Query: 178 LKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQIS 237
L LD+ N +S P L ML L+ N+L+ + L +L L N I
Sbjct: 61 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 120
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 83/203 (40%), Gaps = 7/203 (3%)
Query: 113 WKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSL 172
+ IS P + L+VL+L N+LS LT L+L N++ +
Sbjct: 68 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 127
Query: 173 VRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYR--LADLD 230
V+ +L LDLS+N LS L+ L LL NK+ + + L L+
Sbjct: 128 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 187
Query: 231 LSMNQISGPIP---DILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGN 287
LS NQI P +G++ + L+NT + L+LS + L
Sbjct: 188 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 247
Query: 288 IPDVF-GSK-SYFMALDLSYNNL 308
F G K + LDLSYNNL
Sbjct: 248 SNTTFLGLKWTNLTMLDLSYNNL 270
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 143 KIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKML 202
++PDD+ +TVLNL N + ++ R S L LD+ N +S P L ML
Sbjct: 18 QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75
Query: 203 SRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQIS 237
L+ N+L+ + L +L L N I
Sbjct: 76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 83/203 (40%), Gaps = 7/203 (3%)
Query: 113 WKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSL 172
+ IS P + L+VL+L N+LS LT L+L N++ +
Sbjct: 58 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117
Query: 173 VRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYR--LADLD 230
V+ +L LDLS+N LS L+ L LL NK+ + + L L+
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177
Query: 231 LSMNQISGPIP---DILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGN 287
LS NQI P +G++ + L+NT + L+LS + L
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237
Query: 288 IPDVF-GSK-SYFMALDLSYNNL 308
F G K + LDLSYNNL
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYNNL 260
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 143 KIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKML 202
++PDD+ +TVLNL N + ++ R S L LD+ N +S P L ML
Sbjct: 23 QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 80
Query: 203 SRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQIS 237
L+ N+L+ + L +L L N I
Sbjct: 81 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 115
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 83/203 (40%), Gaps = 7/203 (3%)
Query: 113 WKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSL 172
+ IS P + L+VL+L N+LS LT L+L N++ +
Sbjct: 63 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 122
Query: 173 VRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYR--LADLD 230
V+ +L LDLS+N LS L+ L LL NK+ + + L L+
Sbjct: 123 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 182
Query: 231 LSMNQISGPIP---DILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGN 287
LS NQI P +G++ + L+NT + L+LS + L
Sbjct: 183 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 242
Query: 288 IPDVF-GSK-SYFMALDLSYNNL 308
F G K + LDLSYNNL
Sbjct: 243 SNTTFLGLKWTNLTMLDLSYNNL 265
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 119 QLPSCITSIASLRVLDLVGNK-LSG-KIPDDIGNL------QKLTVLNLA-DNAVSGEIP 169
+LP+ + ++ +++++ N+ +SG ++ DD L +K+ ++ + +N + +
Sbjct: 264 KLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323
Query: 170 SSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADL 229
+SL + L L+ NQL GK+PA FG+ L+ L N++T + G ++ +L
Sbjct: 324 TSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENL 382
Query: 230 DLSMNQISGPIPDIL 244
+ N++ IP+I
Sbjct: 383 SFAHNKLKY-IPNIF 396
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 15/117 (12%)
Query: 181 LDLSNNQLSGKIPAD-FGNLKMLSRALLRGNKLTGSIP--------DSIGNMYRLADLDL 231
++LSNNQ+S K P + F LS L GN LT IP ++ N Y L +DL
Sbjct: 438 INLSNNQIS-KFPKELFSTGSPLSSINLXGNXLT-EIPKNSLKDENENFKNTYLLTSIDL 495
Query: 232 SMNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNT---GMGILNLSRNALG 285
N+++ D K P+ L+++ G GI N R+A G
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRN-QRDAQG 551
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 120 LPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLK 179
LP ++ +L VLD+ N+L+ + L +L L L N + P L L+
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 180 HLDLSNNQLSGKIPADFGN-LKMLSRALLRGNKL 212
L L+NNQL+ ++PA N L+ L LL+ N L
Sbjct: 152 KLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 120 LPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLK 179
LP ++ +L VLD+ N+L+ + L +L L L N + P L L+
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 180 HLDLSNNQLSGKIPADFGN-LKMLSRALLRGNKL 212
L L+NNQL+ ++PA N L+ L LL+ N L
Sbjct: 152 KLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 120 LPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLK 179
LP ++ +L VLD+ N+L+ + L +L L L N + P L L+
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 180 HLDLSNNQLSGKIPADFGN-LKMLSRALLRGNKL 212
L L+NNQL+ ++PA N L+ L LL+ N L
Sbjct: 152 KLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 120 LPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLK 179
LP ++ +L VLD+ N+L+ + L +L L L N + P L L+
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 180 HLDLSNNQLSGKIPADFGN-LKMLSRALLRGNKL 212
L L+NNQL+ ++PA N L+ L LL+ N L
Sbjct: 152 KLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 122 SCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHL 181
S + + +L L N++S P +G L L L+L N + +L L++L L
Sbjct: 193 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 248
Query: 182 DLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIP 241
DL+NNQ+S P L L+ L N+++ P + + L +L+L+ NQ+ P
Sbjct: 249 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 122 SCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHL 181
S + + +L L N++S P +G L L L+L N + +L L++L L
Sbjct: 192 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 247
Query: 182 DLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIP 241
DL+NNQ+S P L L+ L N+++ P + + L +L+L+ NQ+ P
Sbjct: 248 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 303
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 132 VLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQL 188
+LDL N +S DD LQ L L L +N +S + L L+ L +S N L
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 181 LDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPI 240
LDL NN +S DF L+ L +L NK++ + + +L L +S N +
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 241 PDI 243
P++
Sbjct: 119 PNL 121
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 116 ISGQLPSCITSIASLRVLDLVGNKLSGKIPDD-IGNLQKLTVLNLADNAVSGEIPSSLVR 174
I L S + L L L N+++ KI D+ L L LNL+ N + G I S +
Sbjct: 287 IFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFE 344
Query: 175 -LSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSI 220
L L+ LDLS N + F L L L N+L S+PD I
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGI 390
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 96/269 (35%), Gaps = 27/269 (10%)
Query: 102 LDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQ--------- 152
L +L LV+ D Q S ++ VLDL NK+ +D+ N Q
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187
Query: 153 -KLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADF----GNLKMLSRALL 207
+T+ ++ + + E + + +S+ LDLS N + F K+ S L
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247
Query: 208 RGNKLTGSI-------PDSIG----NMYRLADLDLSMNQISGPIPDILGKMXXXXXXXXX 256
+ S PD+ + DLS ++I + +
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307
Query: 257 XXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSL 316
+ T + LNLS+N LG +F + LDLSYN+++ S
Sbjct: 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367
Query: 317 SSSAYIGHLDLSHNHLCGPIPVGSPFDHL 345
+ L L N L +P G FD L
Sbjct: 368 LGLPNLKELALDTNQL-KSVPDG-IFDRL 394
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 122 SCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHL 181
S + + +L L N++S P +G L L L+L N + +L L++L L
Sbjct: 189 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 244
Query: 182 DLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIP 241
DL+NNQ+S P L L+ L N+++ P + + L +L+L+ NQ+ P
Sbjct: 245 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 122 SCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHL 181
S + + +L L N++S P +G L L L+L N + +L L++L L
Sbjct: 188 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 243
Query: 182 DLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIP 241
DL+NNQ+S P L L+ L N+++ P + + L +L+L+ NQ+ P
Sbjct: 244 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 299
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 122 SCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHL 181
S + + +L L N++S P +G L L L+L N + +L L++L L
Sbjct: 188 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 243
Query: 182 DLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIP 241
DL+NNQ+S P L L+ L N+++ P + + L +L+L+ NQ+ P
Sbjct: 244 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 299
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 122 SCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHL 181
S + + +L L N++S P +G L L L+L N + +L L++L L
Sbjct: 189 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 244
Query: 182 DLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIP 241
DL+NNQ+S P L L+ L N+++ P + + L +L+L+ NQ+ P
Sbjct: 245 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 122 SCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHL 181
S + + +L L N++S P +G L L L+L N + +L L++L L
Sbjct: 189 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDL 244
Query: 182 DLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIP 241
DL+NNQ+S P L L+ L N+++ P + + L +L+L+ NQ+ P
Sbjct: 245 DLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 144 IPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLS 203
+P I NLQ L L + ++ +S P+ + L L+ LDL P FG L
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 204 RALLRGNKLTGSIPDSIGNMYRLADLDL 231
R +L+ ++P I + +L LDL
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 17/162 (10%)
Query: 67 RVTDISLRG-----ESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLP 121
R+ ++S+R E +P L SG G +N L +L + +W GI LP
Sbjct: 151 RLRELSIRACPELTELPEP-LASTDASGEHQGLVN--------LQSLRL-EWTGIRS-LP 199
Query: 122 SCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHL 181
+ I ++ +L+ L + + LS P I +L KL L+L P + LK L
Sbjct: 200 ASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258
Query: 182 DLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNM 223
L + +P D L L + LRG +P I +
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Query: 121 PSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKH 180
P C S VL K +P+ I +L L+L N + L+
Sbjct: 5 PRCECSAQDRAVL--CHRKRFVAVPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEE 60
Query: 181 LDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQI 236
L+L+ N +S P F NL L LR N+L + L LD+S N+I
Sbjct: 61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 163 AVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGN 222
+V IP+ RL L+NNQ++ P F +L L + NKLT
Sbjct: 26 SVPAGIPTDKQRLW------LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79
Query: 223 MYRLADLDLSMNQISG 238
+ +L LDL+ N +
Sbjct: 80 LTQLTQLDLNDNHLKS 95
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 139 KLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLV-RLSSLKHLDLSNNQLSGKIPADFG 197
KL + D + NLQ+L N ++ IP+ + +L+ L LDL++N L F
Sbjct: 47 KLEPGVFDHLVNLQQLY---FNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFD 102
Query: 198 NLKMLSRALLRGN 210
NLK L+ L N
Sbjct: 103 NLKSLTHIYLYNN 115
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 29/144 (20%)
Query: 129 SLRVLDLVGNKLSGKIPDD-IGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQ 187
L +LDL +L K NL L VLNL+ + + L +L+HL+L N
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460
Query: 188 L-SGKIPAD--------------------------FGNLKMLSRALLRGNKLTGSIPDSI 220
G I F +LKM++ L N+LT S +++
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520
Query: 221 GNMYRLADLDLSMNQISGPIPDIL 244
++ + L+L+ N IS +P +L
Sbjct: 521 SHLKGIY-LNLASNHISIILPSLL 543
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 118 GQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPS-SLVRLS 176
+LPS + +++L+ L L NK N LT L++ N E+ + L L
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 177 SLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSI 220
+L+ LDLS++ + +D NL++ + + L+ L+ + P S+
Sbjct: 351 NLRELDLSHDDIE---TSDCCNLQLRNLSHLQSLNLSYNEPLSL 391
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 124 ITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDL 183
TS+ + +DL N+L+ + + +L+ + LNLA N +S +PS L LS + ++L
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554
Query: 184 SNNQL 188
N L
Sbjct: 555 RQNPL 559
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 4/123 (3%)
Query: 129 SLRVLDLVGNKLSGKIPDD-IGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQ 187
L +LD+ L K P NL L VLNL+ + L L L+HL+L N
Sbjct: 400 QLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNS 459
Query: 188 LSGKIPADFGNLKM---LSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDIL 244
+ L+M L +L L + + + LDLS N ++G D L
Sbjct: 460 FQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDAL 519
Query: 245 GKM 247
+
Sbjct: 520 SHL 522
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 107/277 (38%), Gaps = 15/277 (5%)
Query: 98 AICQLDTLSTLVIADW--KGISGQL---PSCITSIASLRVLDLVGNKLSGK--IPDDIGN 150
+CQ++ S + D KG +L C+ + +L+ LDL + + + N
Sbjct: 314 QLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKN 373
Query: 151 LQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPAD-FGNLKMLSRALLRG 209
L+ L LNL+ N G + L+ LD++ L K P F NL +L L
Sbjct: 374 LRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH 433
Query: 210 NKLTGSIPDSIGNMYRLADLDLSMNQIS-GPIPDI-LGKMXXXXXXXXXXXXXXGKIPST 267
L S + + L L+L N G I L +M I
Sbjct: 434 CLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQ 493
Query: 268 LLSN-TGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLD 326
+ L+LS N+L G+ D S + L+++ NN++ P L + + ++
Sbjct: 494 AFHGLRNVNHLDLSHNSLTGDSMDAL-SHLKGLYLNMASNNIRIIPPHLLPALSQQSIIN 552
Query: 327 LSHNHL---CGPIPVGSPFDHLEASSFDSNDCLCGNP 360
LSHN L C I + + DS + C NP
Sbjct: 553 LSHNPLDCTCSNIHFITWYKENLHKLEDSEETTCANP 589
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 120 LPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLK 179
LP ++ +L VLD+ N+L+ + L +L L L N + P L L+
Sbjct: 93 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 152
Query: 180 HLDLSNNQLSGKIPADFGN-LKMLSRALLRGNKL 212
L L+NN L+ ++PA N L+ L LL+ N L
Sbjct: 153 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 120 LPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLK 179
LP ++ +L VLD+ N+L+ + L +L L L N + P L L+
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 180 HLDLSNNQLSGKIPADFGN-LKMLSRALLRGNKL 212
L L+NN L+ ++PA N L+ L LL+ N L
Sbjct: 152 KLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%)
Query: 151 LQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGN 210
L +L +N ++N ++ + S + + L++N+L F L+ L +LR N
Sbjct: 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115
Query: 211 KLTGSIPDSIGNMYRLADLDLSMNQISGPIP 241
++T DS + + L L NQI+ P
Sbjct: 116 RITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%)
Query: 135 LVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPA 194
L N+L L+ L L L N ++ S + LSS++ L L +NQ++ P
Sbjct: 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147
Query: 195 DFGNLKMLS 203
F L LS
Sbjct: 148 AFDTLHSLS 156
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 120 LPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLK 179
LP ++ +L VLD+ N+L+ + L +L L L N + P L L+
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 180 HLDLSNNQLSGKIPADFGN-LKMLSRALLRGNKL 212
L L+NN L+ ++PA N L+ L LL+ N L
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 120 LPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLK 179
LP ++ +L VLD+ N+L+ + L +L L L N + P L L+
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 180 HLDLSNNQLSGKIPADFGN-LKMLSRALLRGNKL 212
L L+NN L+ ++PA N L+ L LL+ N L
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 175 LSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMN 234
L +L L+LSNNQ++ P + L +++ L GNKLT P + N+ L L L N
Sbjct: 65 LPNLTSLNLSNNQITDISPIQY--LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 120
Query: 235 QI 236
++
Sbjct: 121 KV 122
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 148 IGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALL 207
+ +L KL LN+ N +S S L LS L L L+NNQL + G L L+ L
Sbjct: 261 VKDLTKLKXLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFL 318
Query: 208 RGNKLTGSIP 217
N +T P
Sbjct: 319 SQNHITDIRP 328
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 120 LPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLK 179
LP ++ +L VLD+ N+L+ + L +L L L N + P L L+
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 180 HLDLSNNQLSGKIPADFGN-LKMLSRALLRGNKL 212
L L+NN L+ ++PA N L+ L LL+ N L
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 122 SCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHL 181
S + + +L+ L + ++S P + NL KLT L DN +S P L L +L +
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEV 200
Query: 182 DLSNNQLSGKIP-ADFGNLKMLS 203
L NNQ+S P A+ NL +++
Sbjct: 201 HLKNNQISDVSPLANTSNLFIVT 223
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 120 LPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLK 179
LP ++ +L VLD+ N+L+ + L +L L L N + P L L+
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 180 HLDLSNNQLSGKIPADFGN-LKMLSRALLRGNKL 212
L L+NN L+ ++PA N L+ L LL+ N L
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 123 CITSIASLRVLDLVGNKLSGK--IPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKH 180
C+ + +L+ LDL N + + NL L LNL+ N G + L+
Sbjct: 342 CLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLEL 401
Query: 181 LDLSNNQLSGKIPAD-FGNLKMLS 203
LDL+ +L P F NL L
Sbjct: 402 LDLAFTRLHINAPQSPFQNLHFLQ 425
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 122 SCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHL 181
S + + +L+ L + N+++ P + NL KLT L DN +S P L L +L +
Sbjct: 151 SPLAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEV 206
Query: 182 DLSNNQLSGKIP-ADFGNLKMLS 203
L +NQ+S P A+ NL +++
Sbjct: 207 HLKDNQISDVSPLANLSNLFIVT 229
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 118 GQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSS 177
G L CI + ++ + KLS K+PDDI + K ++L+ N + S S
Sbjct: 2 GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPSSTK--NIDLSFNPLKILKSYSFSNFSE 57
Query: 178 LKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADL 229
L+ LDLS ++ + L LS +L GN + P S + L +L
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,191,906
Number of Sequences: 62578
Number of extensions: 399935
Number of successful extensions: 1252
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 334
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)