Query 017912
Match_columns 364
No_of_seqs 359 out of 4092
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 04:30:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.7E-41 3.6E-46 353.6 28.2 328 22-355 27-368 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.3E-33 2.9E-38 294.3 19.6 271 88-360 341-611 (968)
3 KOG4194 Membrane glycoprotein 99.9 6.4E-29 1.4E-33 228.1 3.8 272 89-362 183-458 (873)
4 KOG4194 Membrane glycoprotein 99.9 4.2E-28 9.2E-33 222.7 2.4 276 65-355 124-428 (873)
5 KOG0444 Cytoskeletal regulator 99.9 3E-27 6.4E-32 218.9 -2.4 265 89-360 88-379 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 5.4E-27 1.2E-31 217.1 -4.1 249 99-354 74-327 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 2E-26 4.2E-31 203.4 -8.9 250 95-355 60-309 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 3.6E-25 7.9E-30 195.4 -5.2 263 87-358 190-543 (565)
9 PLN03210 Resistant to P. syrin 99.8 1.7E-19 3.7E-24 189.8 21.6 265 66-356 611-906 (1153)
10 KOG4237 Extracellular matrix p 99.8 9.4E-22 2E-26 173.6 -1.7 247 114-362 77-365 (498)
11 PLN03210 Resistant to P. syrin 99.8 1.2E-18 2.6E-23 183.5 21.0 253 93-358 602-884 (1153)
12 cd00116 LRR_RI Leucine-rich re 99.8 3.2E-21 7E-26 176.5 1.5 260 95-355 15-319 (319)
13 PRK15370 E3 ubiquitin-protein 99.8 1.9E-19 4.2E-24 178.6 12.2 225 103-356 199-428 (754)
14 KOG0618 Serine/threonine phosp 99.8 2.9E-21 6.2E-26 186.5 -4.3 219 129-355 242-488 (1081)
15 PRK15387 E3 ubiquitin-protein 99.8 2.9E-18 6.3E-23 169.5 15.3 176 152-356 282-458 (788)
16 cd00116 LRR_RI Leucine-rich re 99.8 6.8E-20 1.5E-24 167.7 2.7 251 68-332 25-319 (319)
17 PRK15370 E3 ubiquitin-protein 99.8 2.6E-18 5.7E-23 170.6 13.1 216 89-333 209-428 (754)
18 PRK15387 E3 ubiquitin-protein 99.8 6.1E-18 1.3E-22 167.3 13.9 181 129-338 283-463 (788)
19 KOG0618 Serine/threonine phosp 99.8 5.9E-20 1.3E-24 177.5 -0.9 230 95-331 256-487 (1081)
20 KOG0617 Ras suppressor protein 99.7 7.7E-20 1.7E-24 144.4 -2.6 162 101-269 31-193 (264)
21 KOG0617 Ras suppressor protein 99.7 5E-20 1.1E-24 145.4 -4.0 185 124-314 29-217 (264)
22 PLN03150 hypothetical protein; 99.7 2.8E-16 6E-21 155.3 14.8 154 19-189 367-528 (623)
23 KOG4237 Extracellular matrix p 99.6 4.7E-17 1E-21 144.1 -6.3 251 67-332 68-358 (498)
24 PLN03150 hypothetical protein; 99.4 3.6E-13 7.8E-18 133.3 9.3 115 250-364 420-537 (623)
25 COG4886 Leucine-rich repeat (L 99.4 4E-13 8.7E-18 126.7 7.2 197 132-337 97-294 (394)
26 KOG0532 Leucine-rich repeat (L 99.4 1.4E-14 3.1E-19 134.0 -4.2 159 119-285 89-247 (722)
27 COG4886 Leucine-rich repeat (L 99.3 1.7E-12 3.7E-17 122.4 7.1 183 124-314 112-295 (394)
28 KOG0532 Leucine-rich repeat (L 99.3 6.2E-14 1.3E-18 129.8 -2.7 196 126-331 73-271 (722)
29 KOG1909 Ran GTPase-activating 99.3 4.2E-13 9.2E-18 117.6 -0.7 241 66-332 30-310 (382)
30 KOG1259 Nischarin, modulator o 99.2 5.6E-12 1.2E-16 108.6 2.6 132 218-355 278-411 (490)
31 KOG3207 Beta-tubulin folding c 99.2 4.7E-12 1E-16 114.1 1.1 207 125-333 118-339 (505)
32 KOG3207 Beta-tubulin folding c 99.2 2.8E-12 6.1E-17 115.5 -0.4 214 95-310 113-340 (505)
33 KOG1259 Nischarin, modulator o 99.2 1.1E-11 2.3E-16 106.9 1.7 128 176-309 284-412 (490)
34 KOG1909 Ran GTPase-activating 99.1 4E-11 8.7E-16 105.3 4.3 231 124-355 26-310 (382)
35 KOG4658 Apoptotic ATPase [Sign 99.1 1.4E-10 3E-15 117.7 5.5 106 103-210 545-652 (889)
36 PF14580 LRR_9: Leucine-rich r 99.1 1.3E-10 2.8E-15 95.4 4.3 125 199-328 18-148 (175)
37 PF14580 LRR_9: Leucine-rich r 99.0 2E-10 4.4E-15 94.3 3.4 106 127-237 18-126 (175)
38 KOG1859 Leucine-rich repeat pr 99.0 1.4E-11 3E-16 117.4 -5.8 129 224-358 164-294 (1096)
39 KOG0531 Protein phosphatase 1, 98.9 1.1E-10 2.3E-15 110.7 -1.3 242 101-357 70-319 (414)
40 PF13855 LRR_8: Leucine rich r 98.9 1.2E-09 2.6E-14 73.8 3.4 60 273-332 2-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.9 2E-09 4.4E-14 109.4 6.0 108 98-207 566-675 (889)
42 KOG0531 Protein phosphatase 1, 98.8 4.3E-10 9.2E-15 106.6 -1.3 228 96-337 88-322 (414)
43 PF13855 LRR_8: Leucine rich r 98.8 4.9E-09 1.1E-13 70.8 4.1 61 248-308 1-61 (61)
44 PF08263 LRRNT_2: Leucine rich 98.8 7.5E-09 1.6E-13 64.3 4.5 39 23-62 2-43 (43)
45 COG5238 RNA1 Ran GTPase-activa 98.5 2.1E-08 4.6E-13 85.7 1.1 85 66-165 30-133 (388)
46 KOG2982 Uncharacterized conser 98.5 2.2E-08 4.9E-13 86.6 0.9 86 126-211 69-157 (418)
47 KOG1859 Leucine-rich repeat pr 98.5 9.6E-10 2.1E-14 105.2 -8.4 179 121-309 102-292 (1096)
48 KOG2120 SCF ubiquitin ligase, 98.4 9.4E-09 2E-13 88.9 -3.9 194 129-324 186-391 (419)
49 COG5238 RNA1 Ran GTPase-activa 98.4 1E-07 2.2E-12 81.5 1.5 89 100-189 27-133 (388)
50 KOG2120 SCF ubiquitin ligase, 98.4 6.8E-09 1.5E-13 89.7 -6.5 155 177-331 186-349 (419)
51 KOG2982 Uncharacterized conser 98.3 3.2E-07 6.9E-12 79.6 1.9 207 127-333 44-262 (418)
52 KOG4579 Leucine-rich repeat (L 98.2 1.7E-07 3.8E-12 72.1 -2.0 60 152-213 53-113 (177)
53 KOG4579 Leucine-rich repeat (L 98.1 2.2E-07 4.8E-12 71.5 -2.0 83 225-309 54-136 (177)
54 PF12799 LRR_4: Leucine Rich r 98.0 6.4E-06 1.4E-10 51.2 3.6 36 129-165 2-37 (44)
55 PF12799 LRR_4: Leucine Rich r 98.0 1.1E-05 2.5E-10 50.0 3.8 36 297-333 2-37 (44)
56 PRK15386 type III secretion pr 97.8 8.3E-05 1.8E-09 68.9 8.4 136 124-282 48-187 (426)
57 KOG3665 ZYG-1-like serine/thre 97.8 8.5E-06 1.8E-10 81.3 1.1 149 128-278 122-281 (699)
58 KOG3665 ZYG-1-like serine/thre 97.7 2E-05 4.4E-10 78.6 3.6 82 175-258 147-230 (699)
59 KOG1644 U2-associated snRNP A' 97.7 7.1E-05 1.5E-09 61.7 5.7 102 226-329 44-149 (233)
60 PRK15386 type III secretion pr 97.6 0.00019 4.1E-09 66.6 7.6 140 95-259 44-188 (426)
61 KOG1644 U2-associated snRNP A' 97.4 0.00028 6.2E-09 58.3 5.0 103 248-352 42-149 (233)
62 KOG2739 Leucine-rich acidic nu 97.1 0.00023 4.9E-09 61.1 1.9 42 124-165 61-104 (260)
63 PF13306 LRR_5: Leucine rich r 97.1 0.0019 4.1E-08 50.4 6.8 60 243-305 53-112 (129)
64 PF13306 LRR_5: Leucine rich r 97.0 0.0018 3.8E-08 50.5 6.3 12 149-160 32-43 (129)
65 KOG2123 Uncharacterized conser 96.8 6.9E-05 1.5E-09 64.8 -4.1 84 248-335 19-103 (388)
66 KOG2739 Leucine-rich acidic nu 96.5 0.0018 3.9E-08 55.7 2.9 86 245-334 40-130 (260)
67 KOG4341 F-box protein containi 96.4 0.00011 2.3E-09 67.0 -5.8 63 100-162 161-226 (483)
68 KOG2123 Uncharacterized conser 96.4 0.0002 4.3E-09 62.1 -3.9 98 128-230 19-123 (388)
69 KOG1947 Leucine rich repeat pr 95.8 0.0012 2.5E-08 63.9 -2.2 110 102-211 187-306 (482)
70 KOG4308 LRR-containing protein 95.8 0.00016 3.4E-09 69.3 -8.2 83 130-212 89-184 (478)
71 PF00560 LRR_1: Leucine Rich R 95.2 0.0069 1.5E-07 31.2 0.4 12 130-141 2-13 (22)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.0098 2.1E-07 30.6 1.0 11 299-309 3-13 (22)
73 KOG1947 Leucine rich repeat pr 95.1 0.0028 6.1E-08 61.2 -2.2 111 126-236 186-307 (482)
74 KOG4308 LRR-containing protein 93.2 0.0019 4.2E-08 61.9 -7.5 35 298-332 378-416 (478)
75 KOG3864 Uncharacterized conser 91.9 0.025 5.4E-07 47.0 -1.6 73 89-161 111-185 (221)
76 PF13504 LRR_7: Leucine rich r 91.8 0.12 2.6E-06 24.7 1.4 13 129-141 2-14 (17)
77 KOG0473 Leucine-rich repeat pr 90.9 0.0063 1.4E-07 51.6 -6.0 86 124-212 38-123 (326)
78 KOG3864 Uncharacterized conser 90.0 0.056 1.2E-06 45.0 -1.2 80 250-329 103-185 (221)
79 smart00369 LRR_TYP Leucine-ric 88.8 0.46 1E-05 25.3 2.3 13 153-165 3-15 (26)
80 smart00370 LRR Leucine-rich re 88.8 0.46 1E-05 25.3 2.3 13 153-165 3-15 (26)
81 PF13516 LRR_6: Leucine Rich r 88.6 0.08 1.7E-06 27.7 -0.8 13 297-309 3-15 (24)
82 KOG4341 F-box protein containi 88.5 0.14 2.9E-06 47.4 0.0 179 100-278 265-458 (483)
83 KOG0473 Leucine-rich repeat pr 87.6 0.017 3.8E-07 49.1 -5.8 88 147-237 37-124 (326)
84 smart00364 LRR_BAC Leucine-ric 69.7 3.5 7.5E-05 22.1 1.4 18 320-338 2-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 69.3 4.5 9.8E-05 21.7 1.8 15 319-333 1-15 (26)
86 KOG3763 mRNA export factor TAP 68.5 2.2 4.7E-05 41.2 0.8 64 245-310 215-284 (585)
87 smart00368 LRR_RI Leucine rich 67.6 2.3 5.1E-05 23.1 0.5 13 297-309 3-15 (28)
88 PF02950 Conotoxin: Conotoxin; 55.7 5.2 0.00011 27.6 0.7 15 1-15 1-15 (75)
89 KOG3763 mRNA export factor TAP 51.2 7.7 0.00017 37.6 1.2 64 222-287 216-285 (585)
90 KOG4242 Predicted myosin-I-bin 49.8 47 0.001 31.9 6.0 13 250-262 356-368 (553)
91 smart00367 LRR_CC Leucine-rich 49.4 14 0.00031 19.4 1.7 11 128-138 2-12 (26)
92 TIGR00864 PCC polycystin catio 25.5 48 0.001 39.0 2.3 33 278-310 1-33 (2740)
93 KOG4242 Predicted myosin-I-bin 25.4 91 0.002 30.0 3.8 37 300-336 333-370 (553)
94 TIGR00864 PCC polycystin catio 23.7 62 0.0013 38.2 2.8 32 254-285 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-41 Score=353.56 Aligned_cols=328 Identities=36% Similarity=0.610 Sum_probs=223.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCCCccceEecCCCCceEEEEcCCCCCc----hhhhh------cC-CCC
Q 017912 22 SPSDKAALLALKSSLNEPYLGIFASWT-GDNCCTNWYGVSCDPTTRRVTDISLRGESED----PILVK------AG-RSG 89 (364)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~~~~W~-~~~~c~~w~gv~c~~~~~~v~~l~l~~~~~~----~~~~~------~~-~~~ 89 (364)
.++|++||++||+++.++ ...+.+|+ ..+||. |.||+|+. .++|+.|++++.... ..+.. +. +.|
T Consensus 27 ~~~~~~~l~~~~~~~~~~-~~~~~~w~~~~~~c~-w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n 103 (968)
T PLN00113 27 HAEELELLLSFKSSINDP-LKYLSNWNSSADVCL-WQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN 103 (968)
T ss_pred CHHHHHHHHHHHHhCCCC-cccCCCCCCCCCCCc-CcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC
Confidence 668999999999999753 44578897 567887 99999985 469999999982110 00000 00 233
Q ss_pred CcccccCcccc-CCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCC
Q 017912 90 YMTGSINPAIC-QLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEI 168 (364)
Q Consensus 90 ~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 168 (364)
.+.|.+|..+. .+++|++|+++ .|.+++.+|. +.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+
T Consensus 104 ~~~~~ip~~~~~~l~~L~~L~Ls-~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 180 (968)
T PLN00113 104 QLSGPIPDDIFTTSSSLRYLNLS-NNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180 (968)
T ss_pred ccCCcCChHHhccCCCCCEEECc-CCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccC
Confidence 44444444433 45555555555 2445444442 34555666666666666666666666777777777777766666
Q ss_pred chhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCC
Q 017912 169 PSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKML 248 (364)
Q Consensus 169 p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 248 (364)
|..+.++++|++|++++|.+.+.+|..++.+++|++|++++|++++.+|..++++++|++|++++|.+++.+|..+++++
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 260 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK 260 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC
Confidence 66666777777777777776666666677777777777777777766777777777777777777777767777777777
Q ss_pred CCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEcc
Q 017912 249 VLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLS 328 (364)
Q Consensus 249 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 328 (364)
+|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+++
T Consensus 261 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 340 (968)
T PLN00113 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340 (968)
T ss_pred CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECc
Confidence 77777777777776677777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCcCcccCCC-CCCCCCCCcccccCCCC
Q 017912 329 HNHLCGPIPV-GSPFDHLEASSFDSNDC 355 (364)
Q Consensus 329 ~N~l~g~ip~-~~~~~~l~~l~l~~n~~ 355 (364)
+|.+.+.+|. ...+++|+.+++++|..
T Consensus 341 ~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred CCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 7777777664 24566777777777764
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-33 Score=294.31 Aligned_cols=271 Identities=37% Similarity=0.571 Sum_probs=238.3
Q ss_pred CCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCC
Q 017912 88 SGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGE 167 (364)
Q Consensus 88 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 167 (364)
.+.+.+.+|..++.+++|+.|+++ .|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++.
T Consensus 341 ~n~l~~~~p~~l~~~~~L~~L~Ls-~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 341 SNKFSGEIPKNLGKHNNLTVLDLS-TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred CCCCcCcCChHHhCCCCCcEEECC-CCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 366677777777777777777777 4777777777777777788888888888777888888888888888888888888
Q ss_pred CchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCC
Q 017912 168 IPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKM 247 (364)
Q Consensus 168 ~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 247 (364)
+|..+.++++|++|++++|.+++.++..+..+++|+.|++++|++.+.+|..+ ...+|++|++++|++++..|..+..+
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh
Confidence 88888888888888888888888888878888889999999998888877755 45789999999999999999999999
Q ss_pred CCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEc
Q 017912 248 LVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDL 327 (364)
Q Consensus 248 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 327 (364)
++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.+++
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l 578 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578 (968)
T ss_pred hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCcccCCCCCCCCCCCcccccCCCCCCCCC
Q 017912 328 SHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNP 360 (364)
Q Consensus 328 ~~N~l~g~ip~~~~~~~l~~l~l~~n~~~c~~~ 360 (364)
++|++.|.+|..+.+..+...++.+|+..|+.+
T Consensus 579 s~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 579 SHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999998888888889999999999744
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=6.4e-29 Score=228.07 Aligned_cols=272 Identities=24% Similarity=0.259 Sum_probs=199.2
Q ss_pred CCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCC
Q 017912 89 GYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEI 168 (364)
Q Consensus 89 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 168 (364)
|.++..--..|.++.+|..|.++ .|.++.--+..|.++++|+.|+|..|++.-.-...|.++++|+.|.+..|.+...-
T Consensus 183 N~It~l~~~~F~~lnsL~tlkLs-rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~ 261 (873)
T KOG4194|consen 183 NRITTLETGHFDSLNSLLTLKLS-RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD 261 (873)
T ss_pred ccccccccccccccchheeeecc-cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc
Confidence 44444444444555555555555 34554434444555555555555555554222344555555555556666555333
Q ss_pred chhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCC
Q 017912 169 PSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKML 248 (364)
Q Consensus 169 p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 248 (364)
...|..+.++++|+|..|+++..-..++.++.+|+.|++++|.+....++.|.-.++|++|++++|.++..-+..+..+.
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence 44566777888888888887755556677888888888888888877788888888888999998888877778888888
Q ss_pred CCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCc---cccCCCCCCEEEccCCcCCCCcchhcccCCCCCeE
Q 017912 249 VLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPD---VFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHL 325 (364)
Q Consensus 249 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 325 (364)
.|++|+|+.|.++..--..|..+++|++|||.+|.+...+-+ .+..++.|+.|++.+|++......+|..++.|+.|
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence 888899999888755556677889999999999999866543 56779999999999999997777899999999999
Q ss_pred EccCCcCcccCCCC-CCCCCCCcccccCCCCCCCCCCC
Q 017912 326 DLSHNHLCGPIPVG-SPFDHLEASSFDSNDCLCGNPLR 362 (364)
Q Consensus 326 ~l~~N~l~g~ip~~-~~~~~l~~l~l~~n~~~c~~~~~ 362 (364)
|+.+|.+...-|.. .++ .|++|.+..-.++|||+++
T Consensus 422 dL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~ 458 (873)
T KOG4194|consen 422 DLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLK 458 (873)
T ss_pred cCCCCcceeecccccccc-hhhhhhhcccceEEeccHH
Confidence 99999988766654 344 8889999999999999974
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=4.2e-28 Score=222.71 Aligned_cols=276 Identities=24% Similarity=0.265 Sum_probs=162.4
Q ss_pred CCceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCc
Q 017912 65 TRRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKI 144 (364)
Q Consensus 65 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 144 (364)
.|+++.++|.. |.++..-.+.+.-++.||+||++ .|.++..--..|..=.++++|+|++|+|+..-
T Consensus 124 sghl~~L~L~~-------------N~I~sv~se~L~~l~alrslDLS-rN~is~i~~~sfp~~~ni~~L~La~N~It~l~ 189 (873)
T KOG4194|consen 124 SGHLEKLDLRH-------------NLISSVTSEELSALPALRSLDLS-RNLISEIPKPSFPAKVNIKKLNLASNRITTLE 189 (873)
T ss_pred ccceeEEeeec-------------cccccccHHHHHhHhhhhhhhhh-hchhhcccCCCCCCCCCceEEeeccccccccc
Confidence 45777777776 33443334444444555555554 23333222233333344555555555555444
Q ss_pred CccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCc------------------------CCCccCccCCCCC
Q 017912 145 PDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQ------------------------LSGKIPADFGNLK 200 (364)
Q Consensus 145 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~------------------------~~~~~~~~~~~l~ 200 (364)
...|.++.+|.+|.|++|+++...+..|.++++|+.|+|..|+ +...-...|..+.
T Consensus 190 ~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~ 269 (873)
T KOG4194|consen 190 TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLE 269 (873)
T ss_pred cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeec
Confidence 4444444455555555555542222333345555555555444 4433334455555
Q ss_pred ccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcc
Q 017912 201 MLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLS 280 (364)
Q Consensus 201 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 280 (364)
++++|+|..|+++..-..++.++.+|+.|++++|.+....++.+...++|+.|+|++|+++...+..+..+..|++|.|+
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence 66666666666655555556666667777777776666666666666777777777777765555666666777777777
Q ss_pred cCCCccccCccccCCCCCCEEEccCCcCCCCc---chhcccCCCCCeEEccCCcCcccCCCC--CCCCCCCcccccCCCC
Q 017912 281 RNALGGNIPDVFGSKSYFMALDLSYNNLKGPI---PGSLSSSAYIGHLDLSHNHLCGPIPVG--SPFDHLEASSFDSNDC 355 (364)
Q Consensus 281 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l~~N~l~g~ip~~--~~~~~l~~l~l~~n~~ 355 (364)
+|+++..-...|..+++|+.|||++|.++..+ ...+..+++|+.|++.+|++. .||.. ..++.|++|++.+|+.
T Consensus 350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcc
Confidence 77776555556667777888888888776533 234566778888888888776 55543 5677888888888874
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=3e-27 Score=218.89 Aligned_cols=265 Identities=26% Similarity=0.352 Sum_probs=218.5
Q ss_pred CCc-ccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCC
Q 017912 89 GYM-TGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGE 167 (364)
Q Consensus 89 ~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 167 (364)
|.+ +.-+|+++.++..|..|+++ .|.+. +.|..+..-+++-+|+|++|+|..+.-.-|-+++.|-+|||++|++. .
T Consensus 88 N~LKnsGiP~diF~l~dLt~lDLS-hNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~ 164 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRLKDLTILDLS-HNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-M 164 (1255)
T ss_pred cccccCCCCchhcccccceeeecc-hhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-h
Confidence 444 34589999999999999999 47776 78888989999999999999999544445678899999999999998 7
Q ss_pred CchhhhcCCCCCEEEccCCcCC-------------------------CccCccCCCCCccchhhcCCccccccccccccC
Q 017912 168 IPSSLVRLSSLKHLDLSNNQLS-------------------------GKIPADFGNLKMLSRALLRGNKLTGSIPDSIGN 222 (364)
Q Consensus 168 ~p~~l~~l~~L~~L~l~~n~~~-------------------------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 222 (364)
+|+.+.++..|++|+|++|.+. ..+|.++..+.+|..++++.|.+. ..|+.+.+
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~ 243 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK 243 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh
Confidence 8888889999999999988643 245666667777888888888777 66788888
Q ss_pred CCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCc-cccCccccCCCCCCEE
Q 017912 223 MYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALG-GNIPDVFGSKSYFMAL 301 (364)
Q Consensus 223 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L 301 (364)
+++|+.|++++|.++ .+....+.+.+|++|+++.|+++ .+|..+..+++|+.|.+.+|+++ +-+|.-++++.+|+++
T Consensus 244 l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred hhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 888888888888887 44555667778888888888887 78888888899999999999887 3467788999999999
Q ss_pred EccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCCCCCCCCCcccccCCCCCCCCC
Q 017912 302 DLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNP 360 (364)
Q Consensus 302 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~l~~l~l~~n~~~c~~~ 360 (364)
..++|++. .+|+.++.+++|+.|.++.|++......+.-++.++.|++..||.+--+|
T Consensus 322 ~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 322 HAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred Hhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 99999986 78999999999999999999998555555678899999999999876544
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=5.4e-27 Score=217.15 Aligned_cols=249 Identities=28% Similarity=0.378 Sum_probs=168.1
Q ss_pred ccCCCCCCEEecCCCCCCc-ccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchh-hhcCC
Q 017912 99 ICQLDTLSTLVIADWKGIS-GQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSS-LVRLS 176 (364)
Q Consensus 99 ~~~l~~L~~L~l~~~~~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~ 176 (364)
+..++.|+.+.+.. |++. .-+|..+..+..|+.|||++|++. ..|..+...+++-.|+|++|++. .||.. +.+++
T Consensus 74 Ls~Lp~LRsv~~R~-N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLt 150 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRD-NNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLT 150 (1255)
T ss_pred hccchhhHHHhhhc-cccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhH
Confidence 34445555555552 4333 236666666777777777777776 66667766777777777777776 44543 33667
Q ss_pred CCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccc-cccchhhhCCCCCCEEEc
Q 017912 177 SLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQIS-GPIPDILGKMLVLSTLNL 255 (364)
Q Consensus 177 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l 255 (364)
.|-+|||++|++. .+|..+..+.+|++|.|++|.+...--..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+++
T Consensus 151 DLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 7777777777766 56666677777777777777655333334555666666666665432 356777777888888888
Q ss_pred cCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcC--c
Q 017912 256 DSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHL--C 333 (364)
Q Consensus 256 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l--~ 333 (364)
+.|++. .+|+.+..+.+|+.|+|++|+++.. .-..+...+|++|+++.|+++ .+|..++.+++|+.|.+.+|++ .
T Consensus 230 S~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 230 SENNLP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred cccCCC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccccc
Confidence 888887 7788888888888888888888732 223344567788888888887 6788888888888888888865 4
Q ss_pred ccCCCCCCCCCCCcccccCCC
Q 017912 334 GPIPVGSPFDHLEASSFDSND 354 (364)
Q Consensus 334 g~ip~~~~~~~l~~l~l~~n~ 354 (364)
|....++.+.+|+.+..++|.
T Consensus 307 GiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred CCccchhhhhhhHHHHhhccc
Confidence 544445667777777776665
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=2e-26 Score=203.36 Aligned_cols=250 Identities=30% Similarity=0.432 Sum_probs=225.1
Q ss_pred cCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhc
Q 017912 95 INPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVR 174 (364)
Q Consensus 95 ~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 174 (364)
+.+++.++..+.++.+.+ |.++ ++|+.++.+..++.++.++|.++ .+|..++.+..|..++++.|.+. .+|+.++.
T Consensus 60 l~~dl~nL~~l~vl~~~~-n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~ 135 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHD-NKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGR 135 (565)
T ss_pred ccHhhhcccceeEEEecc-chhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHH
Confidence 456788999999999984 6665 68888999999999999999999 89999999999999999999998 88999999
Q ss_pred CCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEE
Q 017912 175 LSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLN 254 (364)
Q Consensus 175 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 254 (364)
+..++.++..+|+++ .+|+.+.++.++..+++.+|++....|. .-+++.|+++|...|.+. .+|..++.+.+|+.|+
T Consensus 136 ~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 136 LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLY 212 (565)
T ss_pred Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhhh-cCChhhcchhhhHHHH
Confidence 999999999999998 7899999999999999999999955444 444999999999999876 8889999999999999
Q ss_pred ccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcc
Q 017912 255 LDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCG 334 (364)
Q Consensus 255 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g 334 (364)
+..|.+. .+| .|.++..|++|+++.|++.-...+...+++.+.+||++.|+++ +.|..++-+.+|.+||+++|.+++
T Consensus 213 L~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 213 LRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred hhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc
Confidence 9999998 677 7888999999999999998433344568999999999999998 899999999999999999999999
Q ss_pred cCCCCCCCCCCCcccccCCCC
Q 017912 335 PIPVGSPFDHLEASSFDSNDC 355 (364)
Q Consensus 335 ~ip~~~~~~~l~~l~l~~n~~ 355 (364)
-.+..+.+ .|+.+.+.|||.
T Consensus 290 Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 290 LPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred CCcccccc-eeeehhhcCCch
Confidence 88888888 899999999995
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=3.6e-25 Score=195.37 Aligned_cols=263 Identities=29% Similarity=0.403 Sum_probs=190.8
Q ss_pred CCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCcccc-CCCCCCEEEcccCCCC
Q 017912 87 RSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIG-NLQKLTVLNLADNAVS 165 (364)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~ 165 (364)
...++-+.+|+.++.+..|+-|++. .|.+. .+| .|.++..|++++++.|.+. .+|.... .+..+.+||++.|++.
T Consensus 190 ~~~N~L~tlP~~lg~l~~L~~LyL~-~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 190 CNSNLLETLPPELGGLESLELLYLR-RNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred cchhhhhcCChhhcchhhhHHHHhh-hcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc
Confidence 3445566777777777777777776 35554 455 5777777777777777777 5666554 7889999999999998
Q ss_pred CCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccc-------------------------------
Q 017912 166 GEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTG------------------------------- 214 (364)
Q Consensus 166 ~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~------------------------------- 214 (364)
+.|..+..+.+|++||+++|.++ .+|..++++ +|+.|.+.+|.+..
T Consensus 266 -e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~ 342 (565)
T KOG0472|consen 266 -EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG 342 (565)
T ss_pred -cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence 88999999999999999999998 678889998 89999888875320
Q ss_pred ------cccc-c---ccCCCC--------------------------CcEEEcccCccc---------------------
Q 017912 215 ------SIPD-S---IGNMYR--------------------------LADLDLSMNQIS--------------------- 237 (364)
Q Consensus 215 ------~~~~-~---l~~l~~--------------------------L~~L~l~~n~l~--------------------- 237 (364)
..+. . ...+.+ ...++++.|++.
T Consensus 343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn 422 (565)
T KOG0472|consen 343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNN 422 (565)
T ss_pred cccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcC
Confidence 0000 0 001112 333444444432
Q ss_pred --cccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchh
Q 017912 238 --GPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGS 315 (364)
Q Consensus 238 --~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 315 (364)
+.+|..+..+++|..|++++|.+. .+|..++.+..|+.|+++.|+|. .+|..+..+..++.+-.++|++...-+..
T Consensus 423 ~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~ 500 (565)
T KOG0472|consen 423 KISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSG 500 (565)
T ss_pred ccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHH
Confidence 234455566777777777777776 67777777777888888888776 66666666677777777777776545555
Q ss_pred cccCCCCCeEEccCCcCcccCCCCCCCCCCCcccccCCCCCCC
Q 017912 316 LSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCG 358 (364)
Q Consensus 316 l~~l~~L~~L~l~~N~l~g~ip~~~~~~~l~~l~l~~n~~~c~ 358 (364)
+..+.+|..||+.+|.+....|..+.+.++++|.+.||||.-+
T Consensus 501 l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQP 543 (565)
T ss_pred hhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCCC
Confidence 8899999999999999997777789999999999999998743
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=1.7e-19 Score=189.83 Aligned_cols=265 Identities=19% Similarity=0.246 Sum_probs=172.8
Q ss_pred CceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcC
Q 017912 66 RRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIP 145 (364)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 145 (364)
..++.|++.+ +.+. .++..+..+++|+.+++++ +...+.+|. +..+++|++|++++|.....+|
T Consensus 611 ~~L~~L~L~~-------------s~l~-~L~~~~~~l~~Lk~L~Ls~-~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp 674 (1153)
T PLN03210 611 ENLVKLQMQG-------------SKLE-KLWDGVHSLTGLRNIDLRG-SKNLKEIPD-LSMATNLETLKLSDCSSLVELP 674 (1153)
T ss_pred cCCcEEECcC-------------cccc-ccccccccCCCCCEEECCC-CCCcCcCCc-cccCCcccEEEecCCCCccccc
Confidence 3567777776 3332 2444555666677777664 222234443 5666666777776665555666
Q ss_pred ccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCcccccccccc------
Q 017912 146 DDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDS------ 219 (364)
Q Consensus 146 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~------ 219 (364)
..+.++++|++|++++|..-..+|..+ ++++|++|++++|.....+|.. ..+|++|++++|.+. .+|..
T Consensus 675 ~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L 749 (1153)
T PLN03210 675 SSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENL 749 (1153)
T ss_pred hhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccccccccc
Confidence 666666666666666654444555543 5566666666665443333321 234444555544433 22221
Q ss_pred ------------------------ccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCC
Q 017912 220 ------------------------IGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMG 275 (364)
Q Consensus 220 ------------------------l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 275 (364)
....++|++|++++|...+.+|..++++++|+.|++++|..-+.+|..+ .+++|+
T Consensus 750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~ 828 (1153)
T PLN03210 750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLE 828 (1153)
T ss_pred ccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccC
Confidence 1123578888888888777888889999999999999876555777665 678899
Q ss_pred EEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCC-cCcccCCCCCCCCCCCcccccCCC
Q 017912 276 ILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHN-HLCGPIPVGSPFDHLEASSFDSND 354 (364)
Q Consensus 276 ~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N-~l~g~ip~~~~~~~l~~l~l~~n~ 354 (364)
+|++++|.....+|.. ..+|+.|++++|.++ .+|.++..+++|+.|++++| ++.+..+....+..|+.+++.+++
T Consensus 829 ~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 829 SLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 9999988665555543 367899999999997 68889999999999999985 455433334567778888887776
Q ss_pred CC
Q 017912 355 CL 356 (364)
Q Consensus 355 ~~ 356 (364)
.+
T Consensus 905 ~L 906 (1153)
T PLN03210 905 AL 906 (1153)
T ss_pred cc
Confidence 54
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=9.4e-22 Score=173.57 Aligned_cols=247 Identities=23% Similarity=0.227 Sum_probs=146.1
Q ss_pred CCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEccc-CCCCCCCchhhhcCCCCCEEEccCCcCCCcc
Q 017912 114 KGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLAD-NAVSGEIPSSLVRLSSLKHLDLSNNQLSGKI 192 (364)
Q Consensus 114 ~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~ 192 (364)
|.++..-+..|+.+++||.|||++|.|+.+-|..|.++++|..|.+.+ |+|+..-...|.++.+++.|.+.-|++....
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir 156 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIR 156 (498)
T ss_pred CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchh
Confidence 444433344445555555555555555544444555555444444333 4444222223444444555554444444444
Q ss_pred CccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCcc------------------------------------
Q 017912 193 PADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQI------------------------------------ 236 (364)
Q Consensus 193 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l------------------------------------ 236 (364)
...|..++++..|.+.+|.+...--..+..+..++.+.+..|.+
T Consensus 157 ~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri 236 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRI 236 (498)
T ss_pred HHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHh
Confidence 44444455555555544444421112344444444444444331
Q ss_pred ccccchhhhCCCCCCEE--E-ccCCcCCcccc-hhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCc
Q 017912 237 SGPIPDILGKMLVLSTL--N-LDSNLLSGKIP-STLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPI 312 (364)
Q Consensus 237 ~~~~~~~l~~l~~L~~L--~-l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 312 (364)
...-+..+.. .++.+ . .+.+...+.-| ..|..+++|+.|++++|+++++-+.+|.....++.|.|..|++....
T Consensus 237 ~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~ 314 (498)
T KOG4237|consen 237 NQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS 314 (498)
T ss_pred cccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH
Confidence 1111111110 12222 1 12222333333 35788999999999999999999999999999999999999998766
Q ss_pred chhcccCCCCCeEEccCCcCcccCCCC-CCCCCCCcccccCCCCCCCCCCC
Q 017912 313 PGSLSSSAYIGHLDLSHNHLCGPIPVG-SPFDHLEASSFDSNDCLCGNPLR 362 (364)
Q Consensus 313 ~~~l~~l~~L~~L~l~~N~l~g~ip~~-~~~~~l~~l~l~~n~~~c~~~~~ 362 (364)
...|.++..|+.|++++|+|+..-|.. ..+..|..+.+.+|||.|+|.+-
T Consensus 315 ~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 315 SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred HHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence 778889999999999999999777753 35567788999999999999864
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=1.2e-18 Score=183.49 Aligned_cols=253 Identities=25% Similarity=0.265 Sum_probs=191.5
Q ss_pred cccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhh
Q 017912 93 GSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSL 172 (364)
Q Consensus 93 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 172 (364)
..+|..+ ...+|+.|++.+ +.+. .++..+..+++|++|+++++...+.+| .+..+++|++|++++|.....+|..+
T Consensus 602 ~~lP~~f-~~~~L~~L~L~~-s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si 677 (1153)
T PLN03210 602 RCMPSNF-RPENLVKLQMQG-SKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSI 677 (1153)
T ss_pred CCCCCcC-CccCCcEEECcC-cccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhh
Confidence 4456655 578999999994 6654 578888899999999999987555676 48889999999999987777899999
Q ss_pred hcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhh--------
Q 017912 173 VRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDIL-------- 244 (364)
Q Consensus 173 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-------- 244 (364)
.++++|++|++++|.....+|..+ ++++|+.|++++|.....+|.. ..+|++|++++|.+. .+|..+
T Consensus 678 ~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L 752 (1153)
T PLN03210 678 QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDEL 752 (1153)
T ss_pred hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccc
Confidence 999999999999987666778765 7899999999999766666653 357889999998875 344322
Q ss_pred ----------------------hCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEE
Q 017912 245 ----------------------GKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALD 302 (364)
Q Consensus 245 ----------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 302 (364)
...++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|... .+++|+.|+
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~ 831 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLD 831 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEE
Confidence 112467777777777666778888888888888888876555666554 677888888
Q ss_pred ccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCCCCCCCCCcccccCCCCCCC
Q 017912 303 LSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCG 358 (364)
Q Consensus 303 l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~l~~l~l~~n~~~c~ 358 (364)
+++|.....+|.. ..+|+.|++++|.+.........+++|+.+++.+|+.+..
T Consensus 832 Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 832 LSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred CCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc
Confidence 8887654445442 3578888888888874333346788899999988665543
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=3.2e-21 Score=176.50 Aligned_cols=260 Identities=23% Similarity=0.290 Sum_probs=189.8
Q ss_pred cCccccCCCCCCEEecCCCCCCccc----CccccCCCCCCCEEEccCCcCCC------CcCccccCCCCCCEEEcccCCC
Q 017912 95 INPAICQLDTLSTLVIADWKGISGQ----LPSCITSIASLRVLDLVGNKLSG------KIPDDIGNLQKLTVLNLADNAV 164 (364)
Q Consensus 95 ~~~~~~~l~~L~~L~l~~~~~l~~~----~p~~l~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l 164 (364)
....+..+..|+++++++ +.++.. ++..+...+.+++++++++.+.+ .++..+..+++|++|++++|.+
T Consensus 15 ~~~~~~~l~~L~~l~l~~-~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 15 ATELLPKLLCLQVLRLEG-NTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred hHHHHHHHhhccEEeecC-CCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 444556677799999984 666433 55667778889999999988762 2334567788999999999998
Q ss_pred CCCCchhhhcCCC---CCEEEccCCcCCC----ccCccCCCC-CccchhhcCCcccccc----ccccccCCCCCcEEEcc
Q 017912 165 SGEIPSSLVRLSS---LKHLDLSNNQLSG----KIPADFGNL-KMLSRALLRGNKLTGS----IPDSIGNMYRLADLDLS 232 (364)
Q Consensus 165 ~~~~p~~l~~l~~---L~~L~l~~n~~~~----~~~~~~~~l-~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~ 232 (364)
.+..+..+..+.+ |++|++++|++.+ .+...+..+ ++|++|++++|.+++. ++..+..+++|++|+++
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLA 173 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECc
Confidence 8666666665555 9999999998873 223345566 8899999999998843 33456677889999999
Q ss_pred cCccccc----cchhhhCCCCCCEEEccCCcCCcc----cchhhhCCCCCCEEEcccCCCccccCcccc-----CCCCCC
Q 017912 233 MNQISGP----IPDILGKMLVLSTLNLDSNLLSGK----IPSTLLSNTGMGILNLSRNALGGNIPDVFG-----SKSYFM 299 (364)
Q Consensus 233 ~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-----~~~~L~ 299 (364)
+|.+++. ++..+...++|++|++++|.+++. +...+..+++|++|++++|.+++.....+. ..+.|+
T Consensus 174 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~ 253 (319)
T cd00116 174 NNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLL 253 (319)
T ss_pred CCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCce
Confidence 9998743 334455667999999999988743 334456678899999999998863322221 247899
Q ss_pred EEEccCCcCCC----CcchhcccCCCCCeEEccCCcCccc----CC-CCCCC-CCCCcccccCCCC
Q 017912 300 ALDLSYNNLKG----PIPGSLSSSAYIGHLDLSHNHLCGP----IP-VGSPF-DHLEASSFDSNDC 355 (364)
Q Consensus 300 ~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~N~l~g~----ip-~~~~~-~~l~~l~l~~n~~ 355 (364)
+|++++|.+++ .+...+..+++|+++++++|++... +. ..... +.++.+++..|++
T Consensus 254 ~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 254 TLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred EEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 99999999973 3445566778999999999999743 22 22344 6788899888875
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.9e-19 Score=178.63 Aligned_cols=225 Identities=24% Similarity=0.422 Sum_probs=158.7
Q ss_pred CCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEE
Q 017912 103 DTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLD 182 (364)
Q Consensus 103 ~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 182 (364)
++++.|+++ +|.++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. .+|++|+
T Consensus 199 ~~L~~L~Ls-~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILD-NNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD 268 (754)
T ss_pred cCCcEEEec-CCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence 468888888 47776 4665543 57888888888887 5666554 47888888888887 6776654 4788888
Q ss_pred ccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCc
Q 017912 183 LSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSG 262 (364)
Q Consensus 183 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 262 (364)
+++|.++ .+|..+. ++|+.|++++|+++ .+|..+. .+|+.|++++|.++. +|..+ .++|+.|++++|.+++
T Consensus 269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 269 LFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS 339 (754)
T ss_pred CcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc
Confidence 8888887 5666553 47888888888887 4554443 367888888888873 44433 3578888888888873
Q ss_pred ccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCC---
Q 017912 263 KIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVG--- 339 (364)
Q Consensus 263 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~--- 339 (364)
+|..+. ++|+.|++++|+++ .+|..+. +.|+.|++++|+++ .+|..+. ..|+.|++++|++. .+|..
T Consensus 340 -LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~ 409 (754)
T PRK15370 340 -LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPH 409 (754)
T ss_pred -CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHH
Confidence 665553 67888888888887 4555442 57888888888887 4565553 36888888888887 44431
Q ss_pred --CCCCCCCcccccCCCCC
Q 017912 340 --SPFDHLEASSFDSNDCL 356 (364)
Q Consensus 340 --~~~~~l~~l~l~~n~~~ 356 (364)
...+.+..+++.+|++.
T Consensus 410 ~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 410 FRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhhcCCCccEEEeeCCCcc
Confidence 23456677888888864
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=2.9e-21 Score=186.48 Aligned_cols=219 Identities=31% Similarity=0.413 Sum_probs=130.5
Q ss_pred CCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcC
Q 017912 129 SLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLR 208 (364)
Q Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 208 (364)
+|+++++++|.++ .+|..++.+.+|+.++..+|+++ .+|..+...++|+.|.+.+|.+. .+|......+.|++|+|.
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 4555555555555 33444455555555555555553 44444444444444444444444 334444444444444444
Q ss_pred Ccccccccccc--------------------------ccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCc
Q 017912 209 GNKLTGSIPDS--------------------------IGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSG 262 (364)
Q Consensus 209 ~n~~~~~~~~~--------------------------l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 262 (364)
.|++. .+|+. =..++.|+.|++.+|.++...-..+.++.+|+.|+|++|++.
T Consensus 319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~- 396 (1081)
T KOG0618|consen 319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN- 396 (1081)
T ss_pred hcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-
Confidence 44433 11111 112345667777777777666666777777777777777776
Q ss_pred ccc-hhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcc-cCCCCC
Q 017912 263 KIP-STLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCG-PIPVGS 340 (364)
Q Consensus 263 ~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g-~ip~~~ 340 (364)
.+| ..+.++..|++|++++|+++ .+|+.+.+++.|++|...+|++. ..| .+..++.|+.+|++.|+++- .+|..-
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 344 44566777777777777777 55677777777777777777776 455 56777777777877777753 444433
Q ss_pred CCCCCCcccccCCCC
Q 017912 341 PFDHLEASSFDSNDC 355 (364)
Q Consensus 341 ~~~~l~~l~l~~n~~ 355 (364)
..++|+.|+++||.+
T Consensus 474 p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNTR 488 (1081)
T ss_pred CCcccceeeccCCcc
Confidence 346777777777774
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=2.9e-18 Score=169.55 Aligned_cols=176 Identities=26% Similarity=0.316 Sum_probs=87.3
Q ss_pred CCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEc
Q 017912 152 QKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDL 231 (364)
Q Consensus 152 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 231 (364)
++|+.|++++|+++ .+|. ..++|++|++++|.+++ +|... .+|+.|++++|+++ .+|.. ..+|++|++
T Consensus 282 ~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdL 349 (788)
T PRK15387 282 SGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLT-SLPTL---PSGLQELSV 349 (788)
T ss_pred hhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCCc---ccccccccccCccc-ccccc---ccccceEec
Confidence 34556666666665 3443 23567777777777763 33321 23555566666555 23321 135667777
Q ss_pred ccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCC
Q 017912 232 SMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGP 311 (364)
Q Consensus 232 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 311 (364)
++|++++ +|.. ..+|+.|++++|.++ .+|.. ..+|+.|++++|++++ +|.. .++|+.|++++|.+++
T Consensus 350 S~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss- 416 (788)
T PRK15387 350 SDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS- 416 (788)
T ss_pred CCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-
Confidence 7776663 3321 234555555555554 23322 1345555555555553 2321 2345555555555542
Q ss_pred cchhcccCCCCCeEEccCCcCcccCCC-CCCCCCCCcccccCCCCC
Q 017912 312 IPGSLSSSAYIGHLDLSHNHLCGPIPV-GSPFDHLEASSFDSNDCL 356 (364)
Q Consensus 312 ~~~~l~~l~~L~~L~l~~N~l~g~ip~-~~~~~~l~~l~l~~n~~~ 356 (364)
+|.. ..+|+.|++++|+++ .+|. ...++.++.+++++|++.
T Consensus 417 IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 417 LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 3332 123445555555554 3332 233445555555555543
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=6.8e-20 Score=167.74 Aligned_cols=251 Identities=22% Similarity=0.304 Sum_probs=188.3
Q ss_pred eEEEEcCCCCCchhhhhcCCCCCccc----ccCccccCCCCCCEEecCCCCCCc------ccCccccCCCCCCCEEEccC
Q 017912 68 VTDISLRGESEDPILVKAGRSGYMTG----SINPAICQLDTLSTLVIADWKGIS------GQLPSCITSIASLRVLDLVG 137 (364)
Q Consensus 68 v~~l~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~------~~~p~~l~~l~~L~~L~l~~ 137 (364)
++.+++++ +.+++ .++..+...+.++++++++ +.+. ..++..+..+++|++|++++
T Consensus 25 L~~l~l~~-------------~~l~~~~~~~i~~~l~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 90 (319)
T cd00116 25 LQVLRLEG-------------NTLGEEAAKALASALRPQPSLKELCLSL-NETGRIPRGLQSLLQGLTKGCGLQELDLSD 90 (319)
T ss_pred ccEEeecC-------------CCCcHHHHHHHHHHHhhCCCceEEeccc-cccCCcchHHHHHHHHHHhcCceeEEEccC
Confidence 67777777 55533 2556677888899999984 5554 23455677899999999999
Q ss_pred CcCCCCcCccccCCCC---CCEEEcccCCCCC----CCchhhhcC-CCCCEEEccCCcCCCc----cCccCCCCCccchh
Q 017912 138 NKLSGKIPDDIGNLQK---LTVLNLADNAVSG----EIPSSLVRL-SSLKHLDLSNNQLSGK----IPADFGNLKMLSRA 205 (364)
Q Consensus 138 n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L 205 (364)
|.+.+..+..+..+.+ |++|++++|.+++ .+...+..+ ++|++|++++|.+++. ++..+..+++|++|
T Consensus 91 ~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L 170 (319)
T cd00116 91 NALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170 (319)
T ss_pred CCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEE
Confidence 9998666666655555 9999999999873 233455667 8999999999998843 33456677899999
Q ss_pred hcCCcccccc----ccccccCCCCCcEEEcccCccccc----cchhhhCCCCCCEEEccCCcCCcccchhhh-----CCC
Q 017912 206 LLRGNKLTGS----IPDSIGNMYRLADLDLSMNQISGP----IPDILGKMLVLSTLNLDSNLLSGKIPSTLL-----SNT 272 (364)
Q Consensus 206 ~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~ 272 (364)
++++|.+++. ++..+...++|++|++++|.+++. +...+..+++|++|++++|.+++.....+. ..+
T Consensus 171 ~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~ 250 (319)
T cd00116 171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI 250 (319)
T ss_pred ECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC
Confidence 9999998843 334456667999999999998744 334556788999999999999863333332 237
Q ss_pred CCCEEEcccCCCcc----ccCccccCCCCCCEEEccCCcCCCC----cchhcccC-CCCCeEEccCCcC
Q 017912 273 GMGILNLSRNALGG----NIPDVFGSKSYFMALDLSYNNLKGP----IPGSLSSS-AYIGHLDLSHNHL 332 (364)
Q Consensus 273 ~L~~L~l~~n~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l-~~L~~L~l~~N~l 332 (364)
.|++|++++|.+++ .+...+..+++|+.+++++|.++.. ....+... +.++.+++.+|.+
T Consensus 251 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 99999999999973 2344566678999999999999865 44455555 7899999998864
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=2.6e-18 Score=170.64 Aligned_cols=216 Identities=23% Similarity=0.413 Sum_probs=170.1
Q ss_pred CCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCC
Q 017912 89 GYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEI 168 (364)
Q Consensus 89 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 168 (364)
|.++ .+|..+. ++|++|++++ |.++ .+|..+. .+|+.|++++|.+. .+|..+. .+|++|++++|+++ .+
T Consensus 209 N~Lt-sLP~~l~--~nL~~L~Ls~-N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~L 277 (754)
T PRK15370 209 NELK-SLPENLQ--GNIKTLYANS-NQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CL 277 (754)
T ss_pred CCCC-cCChhhc--cCCCEEECCC-Cccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cc
Confidence 5555 4565554 5899999994 7777 5676553 47999999999998 6777665 58999999999998 67
Q ss_pred chhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCC
Q 017912 169 PSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKML 248 (364)
Q Consensus 169 p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 248 (364)
|..+. .+|++|++++|.++ .+|..+. ++|+.|++++|.++ .+|..+. ++|++|++++|.+++ +|..+ .+
T Consensus 278 P~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--~~ 346 (754)
T PRK15370 278 PENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTS-LPASL--PP 346 (754)
T ss_pred ccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCcccc--ccceeccccCCcccc-CChhh--cC
Confidence 77654 58999999999998 4565443 57999999999998 4565443 689999999999984 66655 37
Q ss_pred CCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhc----ccCCCCCe
Q 017912 249 VLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSL----SSSAYIGH 324 (364)
Q Consensus 249 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~ 324 (364)
+|+.|++++|.++ .+|..+. ++|++|++++|+++. +|..+. ..|+.|++++|++. .+|..+ ...+++..
T Consensus 347 sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~ 419 (754)
T PRK15370 347 ELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTR 419 (754)
T ss_pred cccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccE
Confidence 8999999999998 5776653 689999999999984 555443 46999999999998 555544 44588999
Q ss_pred EEccCCcCc
Q 017912 325 LDLSHNHLC 333 (364)
Q Consensus 325 L~l~~N~l~ 333 (364)
+++.+|+++
T Consensus 420 L~L~~Npls 428 (754)
T PRK15370 420 IIVEYNPFS 428 (754)
T ss_pred EEeeCCCcc
Confidence 999999985
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=6.1e-18 Score=167.30 Aligned_cols=181 Identities=27% Similarity=0.309 Sum_probs=140.9
Q ss_pred CCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcC
Q 017912 129 SLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLR 208 (364)
Q Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 208 (364)
.|+.|++++|.++ .+|. ..++|++|++++|+++ .+|.. ..+|+.|++++|.++ .+|.. ..+|++|+++
T Consensus 283 ~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCccc-cccc---cccccceeECCCCccc-cCCCC---cccccccccccCccc-ccccc---ccccceEecC
Confidence 4555666666665 3443 2378999999999998 45542 246888999999997 45642 2579999999
Q ss_pred CccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCcccc
Q 017912 209 GNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNI 288 (364)
Q Consensus 209 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 288 (364)
+|+++ .+|.. ..+|+.|++++|.+++ +|.. ..+|+.|++++|.++ .+|.. .++|+.|++++|++++ +
T Consensus 351 ~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-I 417 (788)
T PRK15387 351 DNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-L 417 (788)
T ss_pred CCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-C
Confidence 99998 45653 3578889999999984 5643 367999999999998 46643 3679999999999985 5
Q ss_pred CccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCC
Q 017912 289 PDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV 338 (364)
Q Consensus 289 ~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~ 338 (364)
|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|+++|.+|.
T Consensus 418 P~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 418 PML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred Ccc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 643 357889999999998 7899999999999999999999987664
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=5.9e-20 Score=177.52 Aligned_cols=230 Identities=29% Similarity=0.319 Sum_probs=169.3
Q ss_pred cCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhc
Q 017912 95 INPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVR 174 (364)
Q Consensus 95 ~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 174 (364)
+|..++.+.+|+.+... .|.+ ..+|..+...++|+.|.+..|.+. .+|.....++.|++|+|..|++. .+|+.+..
T Consensus 256 lp~wi~~~~nle~l~~n-~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~ 331 (1081)
T KOG0618|consen 256 LPEWIGACANLEALNAN-HNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLA 331 (1081)
T ss_pred chHHHHhcccceEeccc-chhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHh
Confidence 44666666666666666 3555 355666666666666666666666 45556666666666777666666 44543332
Q ss_pred C-C-CCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCE
Q 017912 175 L-S-SLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLST 252 (364)
Q Consensus 175 l-~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 252 (364)
. . .|+.|+.+.|.+.......=..++.|+.|++.+|+++......+.+++.|+.|++++|++.......+.++..|++
T Consensus 332 v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Lee 411 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEE 411 (1081)
T ss_pred hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHH
Confidence 2 1 2555555555554221111224678999999999999888888999999999999999998666667889999999
Q ss_pred EEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCc
Q 017912 253 LNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNH 331 (364)
Q Consensus 253 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~ 331 (364)
|++++|.++ .+|..+..+..|+.|...+|++. ..| .+..++.|+.+|++.|+++-.....-...++|++||+++|.
T Consensus 412 L~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 412 LNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred Hhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 999999998 88999999999999999999998 667 68899999999999999975333333334899999999996
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=7.7e-20 Score=144.36 Aligned_cols=162 Identities=26% Similarity=0.511 Sum_probs=87.6
Q ss_pred CCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCE
Q 017912 101 QLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKH 180 (364)
Q Consensus 101 ~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 180 (364)
++.+++.|.++ .|.++ .+|+.+..+.+|+.|++++|++. .+|..++.+++|+.|++.-|++. .+|..|+.++.|++
T Consensus 31 ~~s~ITrLtLS-HNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLS-HNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcc-cCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 33444444555 24444 34444555555555555555555 45555555555555555555555 55555555555555
Q ss_pred EEccCCcCC-CccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCc
Q 017912 181 LDLSNNQLS-GKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNL 259 (364)
Q Consensus 181 L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 259 (364)
||+.+|++. ..+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+- .+|..++.+..|++|++++|+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 555555553 234555555555555555555555 44555555555555555555554 445555555555555555555
Q ss_pred CCcccchhhh
Q 017912 260 LSGKIPSTLL 269 (364)
Q Consensus 260 l~~~~~~~~~ 269 (364)
++ .+|..++
T Consensus 185 l~-vlppel~ 193 (264)
T KOG0617|consen 185 LT-VLPPELA 193 (264)
T ss_pred ee-ecChhhh
Confidence 55 4444433
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=5e-20 Score=145.44 Aligned_cols=185 Identities=29% Similarity=0.427 Sum_probs=159.2
Q ss_pred cCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccc
Q 017912 124 ITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLS 203 (364)
Q Consensus 124 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 203 (364)
+..+.+++.|.+++|.++ .+|+.+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. .+|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 456778899999999999 78889999999999999999999 89999999999999999999987 8999999999999
Q ss_pred hhhcCCccccc-cccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccC
Q 017912 204 RALLRGNKLTG-SIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRN 282 (364)
Q Consensus 204 ~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 282 (364)
.|++.+|++.. .+|..|..++.|+.|++++|.+. .+|..++++++|+.|.+..|.+- .+|..++.+..|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99999998864 57888888999999999999997 78889999999999999999987 78999999999999999999
Q ss_pred CCccccCccccCC---CCCCEEEccCCcCCCCcch
Q 017912 283 ALGGNIPDVFGSK---SYFMALDLSYNNLKGPIPG 314 (364)
Q Consensus 283 ~l~~~~~~~l~~~---~~L~~L~l~~n~l~~~~~~ 314 (364)
+++ .+|..++++ .+-+.+.+.+|.+...+.+
T Consensus 184 rl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 184 RLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred eee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 998 555555543 2233456667766544443
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.69 E-value=2.8e-16 Score=155.25 Aligned_cols=154 Identities=31% Similarity=0.531 Sum_probs=124.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC---CCccceEecCC--C--CceEEEEcCCCCCchhhhhcCCCCCc
Q 017912 19 GACSPSDKAALLALKSSLNEPYLGIFASWTGDNCC---TNWYGVSCDPT--T--RRVTDISLRGESEDPILVKAGRSGYM 91 (364)
Q Consensus 19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~c---~~w~gv~c~~~--~--~~v~~l~l~~~~~~~~~~~~~~~~~~ 91 (364)
....++|.+||+++|+++..+. ..+|.+++|+ ..|.||.|... . .+|+.|++++ +.+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~---~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~-------------n~L 430 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL---RFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN-------------QGL 430 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc---cCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCC-------------CCc
Confidence 4557789999999999997542 1379876553 14999999532 2 2588999988 888
Q ss_pred ccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchh
Q 017912 92 TGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSS 171 (364)
Q Consensus 92 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 171 (364)
.|.+|+.++++++|+.|+++ .|.+.|.+|..+..+++|++|++++|.++|.+|..++++++|++|+|++|+++|.+|..
T Consensus 431 ~g~ip~~i~~L~~L~~L~Ls-~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 431 RGFIPNDISKLRHLQSINLS-GNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred cccCCHHHhCCCCCCEEECC-CCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence 89999999999999999998 48888889888899999999999999999888988889999999999999998888888
Q ss_pred hhcC-CCCCEEEccCCcCC
Q 017912 172 LVRL-SSLKHLDLSNNQLS 189 (364)
Q Consensus 172 l~~l-~~L~~L~l~~n~~~ 189 (364)
+... .++..+++.+|...
T Consensus 510 l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 510 LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred HhhccccCceEEecCCccc
Confidence 7653 46677777777643
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.56 E-value=4.7e-17 Score=144.12 Aligned_cols=251 Identities=25% Similarity=0.261 Sum_probs=195.0
Q ss_pred ceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccC-CcCCCCcC
Q 017912 67 RVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVG-NKLSGKIP 145 (364)
Q Consensus 67 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~~ 145 (364)
..+.|+|.. |.++...+.+|+.+++||.||++ .|+++..-|+.|.+++.|.+|-+.+ |+|+....
T Consensus 68 ~tveirLdq-------------N~I~~iP~~aF~~l~~LRrLdLS-~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 68 ETVEIRLDQ-------------NQISSIPPGAFKTLHRLRRLDLS-KNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred cceEEEecc-------------CCcccCChhhccchhhhceeccc-ccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 567777777 88888888899999999999999 6999988999999999998887777 89996555
Q ss_pred ccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCc-cCCCCCccchhhcCCcccc-----------
Q 017912 146 DDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPA-DFGNLKMLSRALLRGNKLT----------- 213 (364)
Q Consensus 146 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~----------- 213 (364)
..|+++..|+.|.+.-|++.-...+.+..++++..|.+..|.+. .+++ .+..+..++.+.+..|.+-
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhH
Confidence 67899999999999999988666778889999999999999987 4444 7888888888888777521
Q ss_pred -ccccccccCCC----------------------CCcEE--Ecc-cCccccccc-hhhhCCCCCCEEEccCCcCCcccch
Q 017912 214 -GSIPDSIGNMY----------------------RLADL--DLS-MNQISGPIP-DILGKMLVLSTLNLDSNLLSGKIPS 266 (364)
Q Consensus 214 -~~~~~~l~~l~----------------------~L~~L--~l~-~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~ 266 (364)
...|-.++... .++.+ .++ .+...+..| ..|..+++|+.|++++|.+++.-+.
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 01111111100 11111 111 122222333 3567889999999999999988888
Q ss_pred hhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcC
Q 017912 267 TLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHL 332 (364)
Q Consensus 267 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l 332 (364)
+|.....+++|.|..|++...-...|.++.+|++|+|.+|+|+...|.+|..+.+|..|++-.|.+
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 888889999999999998866667788889999999999999888888888889999998887764
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.43 E-value=3.6e-13 Score=133.28 Aligned_cols=115 Identities=38% Similarity=0.633 Sum_probs=104.4
Q ss_pred CCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccC
Q 017912 250 LSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSH 329 (364)
Q Consensus 250 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 329 (364)
++.|+|++|.+.|.+|..+..+++|+.|+|++|++.|.+|..++.+++|+.|++++|+++|.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcccCCCC--CCCCCCCcccccCCCCCCCCC-CCCC
Q 017912 330 NHLCGPIPVG--SPFDHLEASSFDSNDCLCGNP-LRTC 364 (364)
Q Consensus 330 N~l~g~ip~~--~~~~~l~~l~l~~n~~~c~~~-~~~~ 364 (364)
|+++|.+|.. ....++..+++.+|+..|+.| +.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 9999999973 123456688999999999976 4556
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.40 E-value=4e-13 Score=126.72 Aligned_cols=197 Identities=35% Similarity=0.499 Sum_probs=97.4
Q ss_pred EEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCC-CCCEEEccCCcCCCccCccCCCCCccchhhcCCc
Q 017912 132 VLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLS-SLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGN 210 (364)
Q Consensus 132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 210 (364)
.++...+.+.. ....+..++.++.|++.+|.++ .++....... +|++|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 34444444431 1122333345555555555555 4444444442 5555555555554 33344555555555555555
Q ss_pred cccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCc
Q 017912 211 KLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPD 290 (364)
Q Consensus 211 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 290 (364)
+++ .+|...+..+.|+.|++++|+++ .+|........|+++.+++|... ..+..+..+.++..+.+.+|++.. .+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccc
Confidence 555 33333334555555555555554 33443334444555555555432 333444555555555555555542 234
Q ss_pred cccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCC
Q 017912 291 VFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIP 337 (364)
Q Consensus 291 ~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip 337 (364)
.++.++.++.|++++|.++. ++. +....+++.|++++|.++...|
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccch
Confidence 45555556666666666552 222 5555566666666655554433
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.38 E-value=1.4e-14 Score=133.96 Aligned_cols=159 Identities=33% Similarity=0.519 Sum_probs=91.0
Q ss_pred cCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCC
Q 017912 119 QLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGN 198 (364)
Q Consensus 119 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 198 (364)
++|..+..+..|+.+.+.+|.+. .+|..+.++..|++++|+.|+++ .+|..++.++ |+.|.+++|+++ .+|+.++.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~ 164 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGL 164 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCccccc
Confidence 45555555555555666665555 45555666666666666666665 5555555443 556666666655 55555555
Q ss_pred CCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEE
Q 017912 199 LKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILN 278 (364)
Q Consensus 199 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 278 (364)
...|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+.+.. -.|..||+++|++. .+|-.|..+..|++|.
T Consensus 165 ~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 165 LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQ 240 (722)
T ss_pred chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeee
Confidence 556666666666555 45555555666666666666555 34444442 23555666666655 5555556666666666
Q ss_pred cccCCCc
Q 017912 279 LSRNALG 285 (364)
Q Consensus 279 l~~n~l~ 285 (364)
|.+|.+.
T Consensus 241 LenNPLq 247 (722)
T KOG0532|consen 241 LENNPLQ 247 (722)
T ss_pred eccCCCC
Confidence 6666555
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.34 E-value=1.7e-12 Score=122.42 Aligned_cols=183 Identities=36% Similarity=0.522 Sum_probs=146.9
Q ss_pred cCCCCCCCEEEccCCcCCCCcCccccCCC-CCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCcc
Q 017912 124 ITSIASLRVLDLVGNKLSGKIPDDIGNLQ-KLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKML 202 (364)
Q Consensus 124 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 202 (364)
+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|++. .+|......++|
T Consensus 112 ~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhh
Confidence 555678999999999998 6777777774 8999999999988 66677889999999999999987 666666688899
Q ss_pred chhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccC
Q 017912 203 SRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRN 282 (364)
Q Consensus 203 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 282 (364)
+.|++++|++. .+|........|+++.+++|... ..+..+..+.++..+.+.+|.+. ..+..+..++.+++|++++|
T Consensus 189 ~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 189 NNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred hheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccc
Confidence 99999999988 66766566667999999998643 45566778888888888888886 44677788888999999999
Q ss_pred CCccccCccccCCCCCCEEEccCCcCCCCcch
Q 017912 283 ALGGNIPDVFGSKSYFMALDLSYNNLKGPIPG 314 (364)
Q Consensus 283 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 314 (364)
.++.... ++...+++.|++++|.+....+.
T Consensus 266 ~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 266 QISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccccc--ccccCccCEEeccCccccccchh
Confidence 9985443 78889999999999988755443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.33 E-value=6.2e-14 Score=129.81 Aligned_cols=196 Identities=31% Similarity=0.468 Sum_probs=164.1
Q ss_pred CCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchh
Q 017912 126 SIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRA 205 (364)
Q Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 205 (364)
.+..-...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+.++..|.+++++.|+++ .+|..+..++ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3455567889999998 88888888889999999999988 88999999999999999999988 7787777766 8888
Q ss_pred hcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCc
Q 017912 206 LLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALG 285 (364)
Q Consensus 206 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 285 (364)
.+++|+++ .+|..++...+|..||.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|..+..+ .|..||++.|++.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 89999988 78888998889999999999997 67888899999999999999987 678777755 4889999999998
Q ss_pred cccCccccCCCCCCEEEccCCcCCCCcchhcccCCC---CCeEEccCCc
Q 017912 286 GNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAY---IGHLDLSHNH 331 (364)
Q Consensus 286 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~l~~N~ 331 (364)
.+|..|.++..|++|.|.+|.+. ..|-.++...+ -++|+..-++
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 77888999999999999999997 45555554433 3566666664
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.28 E-value=4.2e-13 Score=117.60 Aligned_cols=241 Identities=20% Similarity=0.268 Sum_probs=125.8
Q ss_pred CceEEEEcCCCCCchhhhhcCCCCCcccc----cCccccCCCCCCEEecCCCCCCccc----Ccc-------ccCCCCCC
Q 017912 66 RRVTDISLRGESEDPILVKAGRSGYMTGS----INPAICQLDTLSTLVIADWKGISGQ----LPS-------CITSIASL 130 (364)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~l~~~----~p~-------~l~~l~~L 130 (364)
..++.|+++| |++... +.+.+.+.+.|+..+++ +.++|. +|+ .+..+++|
T Consensus 30 ~s~~~l~lsg-------------nt~G~EAa~~i~~~L~~~~~L~~v~~s--d~ftGR~~~Ei~e~L~~l~~aL~~~~~L 94 (382)
T KOG1909|consen 30 DSLTKLDLSG-------------NTFGTEAARAIAKVLASKKELREVNLS--DMFTGRLKDEIPEALKMLSKALLGCPKL 94 (382)
T ss_pred CceEEEeccC-------------CchhHHHHHHHHHHHhhcccceeeehH--hhhcCCcHHHHHHHHHHHHHHHhcCCce
Confidence 4688899998 665433 45566777888888888 466665 332 33456678
Q ss_pred CEEEccCCcCCCCcCcc----ccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhh
Q 017912 131 RVLDLVGNKLSGKIPDD----IGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRAL 206 (364)
Q Consensus 131 ~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 206 (364)
++||||.|.+.-..+.. +.++..|++|.|.+|.+...--..+++ .|.+|. .....++-++|+++.
T Consensus 95 ~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 95 QKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFI 163 (382)
T ss_pred eEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEE
Confidence 88888888776443333 345677777777777665111111110 011100 001122333444444
Q ss_pred cCCcccccc----ccccccCCCCCcEEEcccCccccc----cchhhhCCCCCCEEEccCCcCCcc----cchhhhCCCCC
Q 017912 207 LRGNKLTGS----IPDSIGNMYRLADLDLSMNQISGP----IPDILGKMLVLSTLNLDSNLLSGK----IPSTLLSNTGM 274 (364)
Q Consensus 207 l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L 274 (364)
...|++... +...+...+.|+.+.+..|.+... +...+..+++|+.|+|..|.++.. +...+..+++|
T Consensus 164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 444443321 112233344555555555554321 223445566666666666666521 12334455666
Q ss_pred CEEEcccCCCccccCccc-----cCCCCCCEEEccCCcCCCC----cchhcccCCCCCeEEccCCcC
Q 017912 275 GILNLSRNALGGNIPDVF-----GSKSYFMALDLSYNNLKGP----IPGSLSSSAYIGHLDLSHNHL 332 (364)
Q Consensus 275 ~~L~l~~n~l~~~~~~~l-----~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~N~l 332 (364)
++|++++|.+.......+ ...+.|++|.+.+|.++-. +...+...+.|..|++++|.+
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 666666666654322211 2356666666666666532 222333456666666666666
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.20 E-value=5.6e-12 Score=108.63 Aligned_cols=132 Identities=23% Similarity=0.217 Sum_probs=85.2
Q ss_pred ccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCC
Q 017912 218 DSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSY 297 (364)
Q Consensus 218 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 297 (364)
..+..++.|+++|+++|.++ .+.++..-.+.++.|+++.|.+. .+ ..+..+++|+.||+++|.++ .+..|-.++.+
T Consensus 278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred EecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence 33445566777777777765 55566666677777777777776 22 23666777777777777776 33444556667
Q ss_pred CCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcc--cCCCCCCCCCCCcccccCCCC
Q 017912 298 FMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCG--PIPVGSPFDHLEASSFDSNDC 355 (364)
Q Consensus 298 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g--~ip~~~~~~~l~~l~l~~n~~ 355 (364)
+++|.+++|.+. ....+..+-+|.+||+++|++.. .+-..+.+|-|+.+.+.+||.
T Consensus 354 IKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 354 IKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred EeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 777777777764 23445666677777777777642 333345556677777777774
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4.7e-12 Score=114.09 Aligned_cols=207 Identities=23% Similarity=0.230 Sum_probs=123.3
Q ss_pred CCCCCCCEEEccCCcCCCCcC--ccccCCCCCCEEEcccCCCCC--CCchhhhcCCCCCEEEccCCcCCCccCcc-CCCC
Q 017912 125 TSIASLRVLDLVGNKLSGKIP--DDIGNLQKLTVLNLADNAVSG--EIPSSLVRLSSLKHLDLSNNQLSGKIPAD-FGNL 199 (364)
Q Consensus 125 ~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~l~~n~~~~~~~~~-~~~l 199 (364)
.++++|+++.+.++.+. ..+ .....|++++.|||+.|-+.. .+......+++|+.|+++.|.+....... -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 56788999999888876 233 356678889999999887762 22334457888888888888875322211 1245
Q ss_pred CccchhhcCCcccccc-ccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccc--hhhhCCCCCCE
Q 017912 200 KMLSRALLRGNKLTGS-IPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIP--STLLSNTGMGI 276 (364)
Q Consensus 200 ~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~ 276 (364)
++|+.|.++.|.++.. +-..+..+++|+.|++.+|............+..|++|+|++|++. ..+ ...+.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence 6677777777776532 1223345667777777777422222222334556677777777665 222 33455666777
Q ss_pred EEcccCCCccc-cCcc-----ccCCCCCCEEEccCCcCCC-CcchhcccCCCCCeEEccCCcCc
Q 017912 277 LNLSRNALGGN-IPDV-----FGSKSYFMALDLSYNNLKG-PIPGSLSSSAYIGHLDLSHNHLC 333 (364)
Q Consensus 277 L~l~~n~l~~~-~~~~-----l~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~N~l~ 333 (364)
|+++.+.+... .|+. ...+++|+.|++..|++.. ..-..+..+++|+.|.+..|.+.
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 77777666542 1221 2445667777777776642 11233445566666666666654
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.8e-12 Score=115.52 Aligned_cols=214 Identities=23% Similarity=0.211 Sum_probs=141.7
Q ss_pred cCccccCCCCCCEEecCCCCCCcccCc--cccCCCCCCCEEEccCCcCCCC--cCccccCCCCCCEEEcccCCCCCCCch
Q 017912 95 INPAICQLDTLSTLVIADWKGISGQLP--SCITSIASLRVLDLVGNKLSGK--IPDDIGNLQKLTVLNLADNAVSGEIPS 170 (364)
Q Consensus 95 ~~~~~~~l~~L~~L~l~~~~~l~~~~p--~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~ 170 (364)
+...-.+++.|+.+.+.+ ... +..+ .....|++++.||+++|-+... +-.....+++|+.|+++.|.+.-....
T Consensus 113 i~akQsn~kkL~~IsLdn-~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDN-YRV-EDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred HHHHhhhHHhhhheeecC-ccc-cccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 344456778888888873 222 2222 3566788999999999877632 223456788999999999887622221
Q ss_pred h-hhcCCCCCEEEccCCcCCCc-cCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCcccccc-chhhhCC
Q 017912 171 S-LVRLSSLKHLDLSNNQLSGK-IPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPI-PDILGKM 247 (364)
Q Consensus 171 ~-l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l 247 (364)
. -..++.|+.|.++.|+++.. +...+..+|+|+.|++..|...........-++.|++|++++|++...- -...+.+
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccc
Confidence 1 12567888999998888632 2223456788999999888532222333445678889999998875332 1345678
Q ss_pred CCCCEEEccCCcCCcc-cchh-----hhCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCCcCCC
Q 017912 248 LVLSTLNLDSNLLSGK-IPST-----LLSNTGMGILNLSRNALGGNI-PDVFGSKSYFMALDLSYNNLKG 310 (364)
Q Consensus 248 ~~L~~L~l~~n~l~~~-~~~~-----~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~ 310 (364)
+.|+.|+++.+.+... .|+. ...+++|++|++..|++.+.- -..+..+++|+.|.+..|.++.
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 8888888888887642 1222 345688999999999886421 2334566778888888888764
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.15 E-value=1.1e-11 Score=106.92 Aligned_cols=128 Identities=26% Similarity=0.252 Sum_probs=59.0
Q ss_pred CCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEc
Q 017912 176 SSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNL 255 (364)
Q Consensus 176 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 255 (364)
+.|+++|+++|.++ .+.++..-.|+++.|++++|.+... ..++.+.+|+.||+++|.++ .+..+-.++-+++.|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 44555555555554 3444444455555555555555411 22444555555555555444 22222234444555555
Q ss_pred cCCcCCcccchhhhCCCCCCEEEcccCCCccc-cCccccCCCCCCEEEccCCcCC
Q 017912 256 DSNLLSGKIPSTLLSNTGMGILNLSRNALGGN-IPDVFGSKSYFMALDLSYNNLK 309 (364)
Q Consensus 256 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~ 309 (364)
+.|.+.. -..+..+-+|..||+++|++... -...++++|-|+++.+.+|.+.
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 5554431 12233344455555555555421 1223445555555555555554
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.13 E-value=4e-11 Score=105.34 Aligned_cols=231 Identities=20% Similarity=0.248 Sum_probs=150.7
Q ss_pred cCCCCCCCEEEccCCcCCC----CcCccccCCCCCCEEEcccCCC---CCCCchh-------hhcCCCCCEEEccCCcCC
Q 017912 124 ITSIASLRVLDLVGNKLSG----KIPDDIGNLQKLTVLNLADNAV---SGEIPSS-------LVRLSSLKHLDLSNNQLS 189 (364)
Q Consensus 124 l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l---~~~~p~~-------l~~l~~L~~L~l~~n~~~ 189 (364)
+..+..++++++++|.+.. .+...+.+.++|+..+++.-.- ...+|+. +-..+.|++||||.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3344555666666665542 1223344555666665554211 1123332 233456777777777664
Q ss_pred CccCcc----CCCCCccchhhcCCcccccc-------------ccccccCCCCCcEEEcccCccccc----cchhhhCCC
Q 017912 190 GKIPAD----FGNLKMLSRALLRGNKLTGS-------------IPDSIGNMYRLADLDLSMNQISGP----IPDILGKML 248 (364)
Q Consensus 190 ~~~~~~----~~~l~~L~~L~l~~n~~~~~-------------~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~ 248 (364)
-..+.. +.++..|++|+|.+|.+.-. .....++-+.|+.+..+.|.+... +...+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 333322 34567777777777765421 112244567899999999988533 345667788
Q ss_pred CCCEEEccCCcCCcc----cchhhhCCCCCCEEEcccCCCccc----cCccccCCCCCCEEEccCCcCCCCcchhc----
Q 017912 249 VLSTLNLDSNLLSGK----IPSTLLSNTGMGILNLSRNALGGN----IPDVFGSKSYFMALDLSYNNLKGPIPGSL---- 316 (364)
Q Consensus 249 ~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~l---- 316 (364)
.|+.+.++.|.+... +...+..+++|+.|||.+|-|+.. +...+..+++|+.|++++|.+.......+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 999999999988632 234567889999999999999843 34456677899999999999986554433
Q ss_pred -ccCCCCCeEEccCCcCcc------cCCCCCCCCCCCcccccCCCC
Q 017912 317 -SSSAYIGHLDLSHNHLCG------PIPVGSPFDHLEASSFDSNDC 355 (364)
Q Consensus 317 -~~l~~L~~L~l~~N~l~g------~ip~~~~~~~l~~l~l~~n~~ 355 (364)
...|+|+.+.+.+|.++. .++. ...+.|..|.+.+|.+
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~-~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACM-AEKPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHH-hcchhhHHhcCCcccc
Confidence 246899999999999862 1122 3477899999999987
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=1.4e-10 Score=117.74 Aligned_cols=106 Identities=32% Similarity=0.412 Sum_probs=68.4
Q ss_pred CCCCEEecCCCCC--CcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCE
Q 017912 103 DTLSTLVIADWKG--ISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKH 180 (364)
Q Consensus 103 ~~L~~L~l~~~~~--l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 180 (364)
+.|++|-+.+ +. +.......|..++.|++||+++|.--+.+|..++++-+|++|+++++.+. .+|..+.++..|.+
T Consensus 545 ~~L~tLll~~-n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQR-NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEee-cchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 3566666653 32 33333344666777777777776655677777777777777777777776 67777777777777
Q ss_pred EEccCCcCCCccCccCCCCCccchhhcCCc
Q 017912 181 LDLSNNQLSGKIPADFGNLKMLSRALLRGN 210 (364)
Q Consensus 181 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 210 (364)
|++.++.....+|.....+++|++|.+...
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eccccccccccccchhhhcccccEEEeecc
Confidence 777766654444555555777777766554
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.3e-10 Score=95.39 Aligned_cols=125 Identities=27% Similarity=0.250 Sum_probs=40.8
Q ss_pred CCccchhhcCCcccccccccccc-CCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhh-hCCCCCCE
Q 017912 199 LKMLSRALLRGNKLTGSIPDSIG-NMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTL-LSNTGMGI 276 (364)
Q Consensus 199 l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~ 276 (364)
..++++|+|.+|.++. + +.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|.++. +...+ ..+++|++
T Consensus 18 ~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred cccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCE
Confidence 3345555555555542 2 2233 345666666666666532 235556677777777777763 33333 34667777
Q ss_pred EEcccCCCcccc-CccccCCCCCCEEEccCCcCCCCc---chhcccCCCCCeEEcc
Q 017912 277 LNLSRNALGGNI-PDVFGSKSYFMALDLSYNNLKGPI---PGSLSSSAYIGHLDLS 328 (364)
Q Consensus 277 L~l~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l~ 328 (364)
|++++|++...- -..+..+++|+.|++.+|.++... ...+..+|+|+.||-.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 777777775421 234566777777777777776321 2345677778777754
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=2e-10 Score=94.30 Aligned_cols=106 Identities=36% Similarity=0.549 Sum_probs=24.0
Q ss_pred CCCCCEEEccCCcCCCCcCcccc-CCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccC-CCCCccch
Q 017912 127 IASLRVLDLVGNKLSGKIPDDIG-NLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADF-GNLKMLSR 204 (364)
Q Consensus 127 l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~ 204 (364)
..++++|++++|.|+. + +.++ .+.+|+.|++++|.++ .+. .+..++.|++|++++|.++. +.+.+ ..+++|++
T Consensus 18 ~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred cccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCE
Confidence 3345555555555552 2 1233 3455555555555555 222 34445555555555555542 22222 23455555
Q ss_pred hhcCCcccccc-ccccccCCCCCcEEEcccCccc
Q 017912 205 ALLRGNKLTGS-IPDSIGNMYRLADLDLSMNQIS 237 (364)
Q Consensus 205 L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~ 237 (364)
|++++|++... .-..+..+++|+.|++.+|.++
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 55555554321 0123344455555555555543
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.96 E-value=1.4e-11 Score=117.44 Aligned_cols=129 Identities=23% Similarity=0.248 Sum_probs=105.1
Q ss_pred CCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 017912 224 YRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDL 303 (364)
Q Consensus 224 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 303 (364)
..|...++++|.++ .+..++.-++.++.|+|++|+++.. +.+..+++|+.|||++|.+. .+|..-..-.+|+.|.+
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence 46778889999887 6677888899999999999999843 47888999999999999998 45543322345999999
Q ss_pred cCCcCCCCcchhcccCCCCCeEEccCCcCcc--cCCCCCCCCCCCcccccCCCCCCC
Q 017912 304 SYNNLKGPIPGSLSSSAYIGHLDLSHNHLCG--PIPVGSPFDHLEASSFDSNDCLCG 358 (364)
Q Consensus 304 ~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g--~ip~~~~~~~l~~l~l~~n~~~c~ 358 (364)
++|.++. ...+.++++|+.||+++|-+.+ ++-..+.+..|..|++.|||.-|.
T Consensus 240 rnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 240 RNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred cccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 9999973 3457899999999999998875 444456788899999999998875
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.93 E-value=1.1e-10 Score=110.69 Aligned_cols=242 Identities=26% Similarity=0.267 Sum_probs=138.2
Q ss_pred CCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCE
Q 017912 101 QLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKH 180 (364)
Q Consensus 101 ~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 180 (364)
.+..++.+.+. .+.+. .+-..+..+++|+.|++..|.+.. +...+..+++|++|++++|.++.. ..+..++.|+.
T Consensus 70 ~l~~l~~l~l~-~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLR-QNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccc-hhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 34445555554 24333 233336667777777777777763 332356677777777777777632 22455666777
Q ss_pred EEccCCcCCCccCccCCCCCccchhhcCCcccccccc-ccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCc
Q 017912 181 LDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIP-DSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNL 259 (364)
Q Consensus 181 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 259 (364)
|++.+|.+... ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence 77777776522 345556777777777777663322 1 35566677777777766422 222333344444666666
Q ss_pred CCcccchhhhCCC--CCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCccc--
Q 017912 260 LSGKIPSTLLSNT--GMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGP-- 335 (364)
Q Consensus 260 l~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~-- 335 (364)
++..-+ +.... .|+.+++++|.+.. .+..+..+.++..+++.+|++... ..+...+.+..+....|.+...
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 294 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEA 294 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhh
Confidence 652211 11122 26777788877763 224456677777888888877632 2244455666666666665421
Q ss_pred ---CCCCCCCCCCCcccccCCCCCC
Q 017912 336 ---IPVGSPFDHLEASSFDSNDCLC 357 (364)
Q Consensus 336 ---ip~~~~~~~l~~l~l~~n~~~c 357 (364)
.+.....+.+....+.+|+..-
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 295 ISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hhccccccccccccccccccCcccc
Confidence 1113456667777777777544
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=1.2e-09 Score=73.83 Aligned_cols=60 Identities=38% Similarity=0.480 Sum_probs=38.1
Q ss_pred CCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcC
Q 017912 273 GMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHL 332 (364)
Q Consensus 273 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l 332 (364)
+|++|++++|+++...+.+|..+++|++|++++|+++...+..|..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666655555666666666666666666655555666666666666666653
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.88 E-value=2e-09 Score=109.43 Aligned_cols=108 Identities=32% Similarity=0.453 Sum_probs=85.6
Q ss_pred cccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCC
Q 017912 98 AICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSS 177 (364)
Q Consensus 98 ~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 177 (364)
.|..++.|++||+++ |.--+.+|..++.+-+||+|++++..+. .+|..+++++.|.+|++..+.....+|.....+++
T Consensus 566 ff~~m~~LrVLDLs~-~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSG-NSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS 643 (889)
T ss_pred HHhhCcceEEEECCC-CCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccc
Confidence 477899999999995 5555789999999999999999999999 89999999999999999998876566777777999
Q ss_pred CCEEEccCCcCC--CccCccCCCCCccchhhc
Q 017912 178 LKHLDLSNNQLS--GKIPADFGNLKMLSRALL 207 (364)
Q Consensus 178 L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l 207 (364)
|++|.+...... ...-..+..+.+|+.+..
T Consensus 644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 644 LRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred ccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 999999766422 222233445555555544
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.82 E-value=4.3e-10 Score=106.63 Aligned_cols=228 Identities=28% Similarity=0.295 Sum_probs=138.3
Q ss_pred CccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcC
Q 017912 96 NPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRL 175 (364)
Q Consensus 96 ~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 175 (364)
-..+..+++|+.+++.+ |.+.. +...+..+++|++|++++|.|+... .+..++.|+.|++++|.+. .+ ..+..+
T Consensus 88 ~~~l~~~~~l~~l~l~~-n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~-~~~~~l 161 (414)
T KOG0531|consen 88 LNHLSKLKSLEALDLYD-NKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DI-SGLESL 161 (414)
T ss_pred hcccccccceeeeeccc-cchhh-cccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hc-cCCccc
Confidence 34466777788888873 55553 2222666778888888888877432 3556667888888888876 22 234457
Q ss_pred CCCCEEEccCCcCCCccC-ccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCC--CCCE
Q 017912 176 SSLKHLDLSNNQLSGKIP-ADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKML--VLST 252 (364)
Q Consensus 176 ~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~ 252 (364)
.+|+.+++++|++...-+ . ...+.+++.+.+.+|.+... ..+.....+..+++..|.++..-+ +.... +|+.
T Consensus 162 ~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~ 236 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRE 236 (414)
T ss_pred hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHH
Confidence 788888888888763322 1 46677788888888776522 223333444445666666652211 11222 2777
Q ss_pred EEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCC---cch-hcccCCCCCeEEcc
Q 017912 253 LNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGP---IPG-SLSSSAYIGHLDLS 328 (364)
Q Consensus 253 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~---~~~-~l~~l~~L~~L~l~ 328 (364)
+++++|.+. .++..+..+..+..|++.+|++.... .+...+.+..+....|.+... ... .....+.+..+.+.
T Consensus 237 l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (414)
T KOG0531|consen 237 LYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLE 313 (414)
T ss_pred HhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccc
Confidence 888888776 33345566677778888887776432 133445555666666665421 111 14456677777777
Q ss_pred CCcCcccCC
Q 017912 329 HNHLCGPIP 337 (364)
Q Consensus 329 ~N~l~g~ip 337 (364)
+|.+....+
T Consensus 314 ~~~~~~~~~ 322 (414)
T KOG0531|consen 314 LNPIRKISS 322 (414)
T ss_pred cCccccccc
Confidence 777665554
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=4.9e-09 Score=70.82 Aligned_cols=61 Identities=34% Similarity=0.431 Sum_probs=45.8
Q ss_pred CCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcC
Q 017912 248 LVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNL 308 (364)
Q Consensus 248 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l 308 (364)
++|++|++++|.++...+..|..+++|++|++++|+++...+..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4577777777777755456777778888888888888777777778888888888888764
No 44
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.81 E-value=7.5e-09 Score=64.28 Aligned_cols=39 Identities=46% Similarity=0.942 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCC---CCCCCCccceEec
Q 017912 23 PSDKAALLALKSSLNEPYLGIFASWTG---DNCCTNWYGVSCD 62 (364)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~~~~~~W~~---~~~c~~w~gv~c~ 62 (364)
++|++||++||+++..++...+.+|+. .+||. |.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~-W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCS-WSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCC-STTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCee-eccEEeC
Confidence 679999999999999766678999983 58887 9999996
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.54 E-value=2.1e-08 Score=85.68 Aligned_cols=85 Identities=18% Similarity=0.364 Sum_probs=56.2
Q ss_pred CceEEEEcCCCCCchhhhhcCCCCCcccccC----ccccCCCCCCEEecCCCCCCcccCc-----------cccCCCCCC
Q 017912 66 RRVTDISLRGESEDPILVKAGRSGYMTGSIN----PAICQLDTLSTLVIADWKGISGQLP-----------SCITSIASL 130 (364)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~p-----------~~l~~l~~L 130 (364)
..++.++++| |++...-. ..+.+-++|+...++ ..++|... +.+-+|++|
T Consensus 30 d~~~evdLSG-------------NtigtEA~e~l~~~ia~~~~L~vvnfs--d~ftgr~kde~~~~L~~Ll~aLlkcp~l 94 (388)
T COG5238 30 DELVEVDLSG-------------NTIGTEAMEELCNVIANVRNLRVVNFS--DAFTGRDKDELYSNLVMLLKALLKCPRL 94 (388)
T ss_pred cceeEEeccC-------------CcccHHHHHHHHHHHhhhcceeEeehh--hhhhcccHHHHHHHHHHHHHHHhcCCcc
Confidence 3678888888 66655433 344556788888877 35555422 334667888
Q ss_pred CEEEccCCcCCCCcCcc----ccCCCCCCEEEcccCCCC
Q 017912 131 RVLDLVGNKLSGKIPDD----IGNLQKLTVLNLADNAVS 165 (364)
Q Consensus 131 ~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~ 165 (364)
+..++|.|.+....|.. ++.-+.|++|.+++|.+.
T Consensus 95 ~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 95 QKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred eeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 88888888777555543 345677778888777664
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=2.2e-08 Score=86.57 Aligned_cols=86 Identities=30% Similarity=0.398 Sum_probs=52.8
Q ss_pred CCCCCCEEEccCCcCCC--CcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCc-cCccCCCCCcc
Q 017912 126 SIASLRVLDLVGNKLSG--KIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGK-IPADFGNLKML 202 (364)
Q Consensus 126 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L 202 (364)
..+.++++|+.+|.++. ++...+.+++.|++|+|+.|++...|-..-....+|++|-|.+..+.-. ....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45677777888877762 2334456777777777777777633221112345777777777665422 33345666777
Q ss_pred chhhcCCcc
Q 017912 203 SRALLRGNK 211 (364)
Q Consensus 203 ~~L~l~~n~ 211 (364)
++|+++.|.
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 777777764
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.52 E-value=9.6e-10 Score=105.17 Aligned_cols=179 Identities=29% Similarity=0.279 Sum_probs=110.2
Q ss_pred ccccCCCCCCCEEEccCCcCCCCcCccccCC-CCCCEEEcccCCCC----------CCCchhhhcCCCCCEEEccCCcCC
Q 017912 121 PSCITSIASLRVLDLVGNKLSGKIPDDIGNL-QKLTVLNLADNAVS----------GEIPSSLVRLSSLKHLDLSNNQLS 189 (364)
Q Consensus 121 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~----------~~~p~~l~~l~~L~~L~l~~n~~~ 189 (364)
|-.+..+++|+.|.+.++.+.. ...+..+ .+|++|.-. |.+. |.+..++ -..+|.+.+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence 4456778888899888888762 1112111 234444322 2111 1111111 1135677777888776
Q ss_pred CccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhh
Q 017912 190 GKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLL 269 (364)
Q Consensus 190 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 269 (364)
.+.+++.-++.|+.|+|++|+++.. +.+..++.|++||+++|.++....-....+ +|+.|.+++|.++.. ..+.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh--hhHH
Confidence 5666777778888888888888743 367777888888888888763322122223 388888888877622 3456
Q ss_pred CCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCCcCC
Q 017912 270 SNTGMGILNLSRNALGGNI-PDVFGSKSYFMALDLSYNNLK 309 (364)
Q Consensus 270 ~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~ 309 (364)
++.+|..||+++|-+.+.- -..++.+..|+.|.|.||.+-
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6777888888888776421 123455677778888888775
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=9.4e-09 Score=88.90 Aligned_cols=194 Identities=18% Similarity=0.132 Sum_probs=113.3
Q ss_pred CCCEEEccCCcCCCC-cCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCc-CCCc-cCccCCCCCccchh
Q 017912 129 SLRVLDLVGNKLSGK-IPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQ-LSGK-IPADFGNLKMLSRA 205 (364)
Q Consensus 129 ~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-~~~~-~~~~~~~l~~L~~L 205 (364)
.|++||++...++.. ....+..+.+|+.|.+.++++.+.+...+.+..+|+.|+++.+. ++.. ....+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477888887776622 22234567788888888888887777777777888888887653 2211 11235677788888
Q ss_pred hcCCccccccccccc-c-CCCCCcEEEcccCcc---ccccchhhhCCCCCCEEEccCCc-CCcccchhhhCCCCCCEEEc
Q 017912 206 LLRGNKLTGSIPDSI-G-NMYRLADLDLSMNQI---SGPIPDILGKMLVLSTLNLDSNL-LSGKIPSTLLSNTGMGILNL 279 (364)
Q Consensus 206 ~l~~n~~~~~~~~~l-~-~l~~L~~L~l~~n~l---~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l 279 (364)
+++.+.++......+ . --++|+.|+++++.- ...+..-..++++|..||+++|. ++......+..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 888776654332111 1 124567777776421 11111222467777777777764 33333345566777777777
Q ss_pred ccCCCccccCc---cccCCCCCCEEEccCCcCCCCcchhcccCCCCCe
Q 017912 280 SRNALGGNIPD---VFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGH 324 (364)
Q Consensus 280 ~~n~l~~~~~~---~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 324 (364)
+.|-. .+|. .+...|.|.+|++.++-=.+..--....+++|+.
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 77643 3333 3456677777777765433332222334455544
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.39 E-value=1e-07 Score=81.54 Aligned_cols=89 Identities=26% Similarity=0.398 Sum_probs=59.4
Q ss_pred cCCCCCCEEecCCCCCCccc----CccccCCCCCCCEEEccCCcCC---CCcC-------ccccCCCCCCEEEcccCCCC
Q 017912 100 CQLDTLSTLVIADWKGISGQ----LPSCITSIASLRVLDLVGNKLS---GKIP-------DDIGNLQKLTVLNLADNAVS 165 (364)
Q Consensus 100 ~~l~~L~~L~l~~~~~l~~~----~p~~l~~l~~L~~L~l~~n~l~---~~~~-------~~~~~l~~L~~L~L~~n~l~ 165 (364)
.-+..++.++++| |.+..+ +...+.+-++|+..+++.-... ..++ ..+-+|+.|+..+|+.|.|.
T Consensus 27 ~~~d~~~evdLSG-NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSG-NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HhhcceeEEeccC-CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3467788888885 666544 4455566678888887764322 2222 23457788888888888887
Q ss_pred CCCchhh----hcCCCCCEEEccCCcCC
Q 017912 166 GEIPSSL----VRLSSLKHLDLSNNQLS 189 (364)
Q Consensus 166 ~~~p~~l----~~l~~L~~L~l~~n~~~ 189 (364)
...|+.+ ++-+.|++|.+++|.+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCC
Confidence 6666543 45678888888888764
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=6.8e-09 Score=89.74 Aligned_cols=155 Identities=25% Similarity=0.283 Sum_probs=81.8
Q ss_pred CCCEEEccCCcCCCc-cCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCc-cccc-cchhhhCCCCCCEE
Q 017912 177 SLKHLDLSNNQLSGK-IPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQ-ISGP-IPDILGKMLVLSTL 253 (364)
Q Consensus 177 ~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L 253 (364)
.|++|||++..++.. +-..+..+.+|+.|.+.++++...+...+++-.+|+.++++++. ++.. ..-.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477777777666532 22235566777777777777777777777777777777777653 2211 11234566777777
Q ss_pred EccCCcCCcccchh-hhC-CCCCCEEEcccCCCc---cccCccccCCCCCCEEEccCC-cCCCCcchhcccCCCCCeEEc
Q 017912 254 NLDSNLLSGKIPST-LLS-NTGMGILNLSRNALG---GNIPDVFGSKSYFMALDLSYN-NLKGPIPGSLSSSAYIGHLDL 327 (364)
Q Consensus 254 ~l~~n~l~~~~~~~-~~~-~~~L~~L~l~~n~l~---~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l 327 (364)
+++.|.+....... +.. -++|+.|+++++.-. ..+..-...+++|.+|||++| .++...-..+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 77777654322111 110 134555555554321 001111234555555555554 233333344455555555555
Q ss_pred cCCc
Q 017912 328 SHNH 331 (364)
Q Consensus 328 ~~N~ 331 (364)
+.|.
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 5553
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=3.2e-07 Score=79.59 Aligned_cols=207 Identities=21% Similarity=0.186 Sum_probs=94.7
Q ss_pred CCCCCEEEccCCcCCCCcC-ccc-cCCCCCCEEEcccCCCCC--CCchhhhcCCCCCEEEccCCcCCCccCccCCCCCcc
Q 017912 127 IASLRVLDLVGNKLSGKIP-DDI-GNLQKLTVLNLADNAVSG--EIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKML 202 (364)
Q Consensus 127 l~~L~~L~l~~n~l~~~~~-~~~-~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 202 (364)
...++.+.+.++.+..... ..| ..++.++++||.+|.++. ++-..+.+++.|++|+++.|.+...+...-....+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 3344455555554432111 112 244566677777777662 223334466777777777776653332222344566
Q ss_pred chhhcCCcccccc-ccccccCCCCCcEEEcccCccccccc--hhhhC-CCCCCEEEccCCcCCc--ccchhhhCCCCCCE
Q 017912 203 SRALLRGNKLTGS-IPDSIGNMYRLADLDLSMNQISGPIP--DILGK-MLVLSTLNLDSNLLSG--KIPSTLLSNTGMGI 276 (364)
Q Consensus 203 ~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~--~~l~~-l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~ 276 (364)
+.|.|.+..+.-. ....+..++.+++|+++.|.+..... ..... .+.+++|+.-.|...- .+...-.-++++..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 6666666655421 22334455666666666664321100 00011 1123333333332210 00001112345555
Q ss_pred EEcccCCCcccc-CccccCCCCCCEEEccCCcCCC-CcchhcccCCCCCeEEccCCcCc
Q 017912 277 LNLSRNALGGNI-PDVFGSKSYFMALDLSYNNLKG-PIPGSLSSSAYIGHLDLSHNHLC 333 (364)
Q Consensus 277 L~l~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~N~l~ 333 (364)
+.+..|.+.... .......+.+..|+|+.|+|.. ..-+.+..++.|..|.+++|++.
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 555555544321 1223344445556666665543 12234455566666666666554
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.15 E-value=1.7e-07 Score=72.05 Aligned_cols=60 Identities=28% Similarity=0.519 Sum_probs=26.0
Q ss_pred CCCCEEEcccCCCCCCCchhhh-cCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCcccc
Q 017912 152 QKLTVLNLADNAVSGEIPSSLV-RLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLT 213 (364)
Q Consensus 152 ~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 213 (364)
..|+..+|++|.+. .+|+.|. .++.++.|++++|.++ .+|..++.++.|+.|+++.|.+.
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence 34444455555544 3333333 2234444444444444 34444444444444444444443
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.12 E-value=2.2e-07 Score=71.48 Aligned_cols=83 Identities=28% Similarity=0.262 Sum_probs=37.6
Q ss_pred CCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEcc
Q 017912 225 RLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLS 304 (364)
Q Consensus 225 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~ 304 (364)
.|+..++++|.+....+..-...+.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 3444445555444222222223334455555555554 44444555555555555555544 223333334445555555
Q ss_pred CCcCC
Q 017912 305 YNNLK 309 (364)
Q Consensus 305 ~n~l~ 309 (364)
+|.+.
T Consensus 132 ~na~~ 136 (177)
T KOG4579|consen 132 ENARA 136 (177)
T ss_pred CCccc
Confidence 55443
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=6.4e-06 Score=51.16 Aligned_cols=36 Identities=39% Similarity=0.722 Sum_probs=17.4
Q ss_pred CCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCC
Q 017912 129 SLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVS 165 (364)
Q Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 165 (364)
+|++|++++|.++ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555544
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=1.1e-05 Score=50.00 Aligned_cols=36 Identities=33% Similarity=0.488 Sum_probs=18.4
Q ss_pred CCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCc
Q 017912 297 YFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLC 333 (364)
Q Consensus 297 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~ 333 (364)
+|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=8.3e-05 Score=68.93 Aligned_cols=136 Identities=16% Similarity=0.251 Sum_probs=73.5
Q ss_pred cCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccc
Q 017912 124 ITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLS 203 (364)
Q Consensus 124 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 203 (364)
+..+.+++.|++++|.++ .+| .+ -.+|++|.++++.--..+|..+. .+|++|++++|.....+|. .|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 445688999999999887 455 22 24688999987543335665442 5788888888732224443 345
Q ss_pred hhhcCCcccc--ccccccccCCCCCcEEEcccCc-cc-cccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEc
Q 017912 204 RALLRGNKLT--GSIPDSIGNMYRLADLDLSMNQ-IS-GPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNL 279 (364)
Q Consensus 204 ~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~-l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 279 (364)
.|++..+... +.+|. +|+.|.+.+++ .. ...+.. -.++|++|.+++|... ..|..+. .+|+.|++
T Consensus 116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred eEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 5555544332 12222 35556554322 10 011110 1245677777666644 2333322 45666666
Q ss_pred ccC
Q 017912 280 SRN 282 (364)
Q Consensus 280 ~~n 282 (364)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 654
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=8.5e-06 Score=81.30 Aligned_cols=149 Identities=19% Similarity=0.232 Sum_probs=92.9
Q ss_pred CCCCEEEccCCcCC-CCcCccc-cCCCCCCEEEcccCCCCCC-CchhhhcCCCCCEEEccCCcCCCccCccCCCCCccch
Q 017912 128 ASLRVLDLVGNKLS-GKIPDDI-GNLQKLTVLNLADNAVSGE-IPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSR 204 (364)
Q Consensus 128 ~~L~~L~l~~n~l~-~~~~~~~-~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 204 (364)
.+|+.|++++.... ..-|..+ .-+|.|+.|.+.+-.+... .-.-..++++|..||+++++++.. .+++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 46788888775432 1222223 3468888888887666422 223334778888888888887633 56788888888
Q ss_pred hhcCCccccc-cccccccCCCCCcEEEcccCcccccc--ch----hhhCCCCCCEEEccCCcCCcccchhh-hCCCCCCE
Q 017912 205 ALLRGNKLTG-SIPDSIGNMYRLADLDLSMNQISGPI--PD----ILGKMLVLSTLNLDSNLLSGKIPSTL-LSNTGMGI 276 (364)
Q Consensus 205 L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~--~~----~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~ 276 (364)
|.+.+-.+.. ..-..+.++++|+.||+|........ .. .-..+++|+.||.+++.+.+.+-+.+ ...++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 8887765542 12234667888888888886543221 11 11347889999999888876544333 22344444
Q ss_pred EE
Q 017912 277 LN 278 (364)
Q Consensus 277 L~ 278 (364)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 43
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.74 E-value=2e-05 Score=78.64 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=32.9
Q ss_pred CCCCCEEEccCCcCCC-ccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCcccc-ccchhhhCCCCCCE
Q 017912 175 LSSLKHLDLSNNQLSG-KIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISG-PIPDILGKMLVLST 252 (364)
Q Consensus 175 l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~ 252 (364)
+|+|+.|.+.+-.+.. .+.....++++|..|++++.+++.. ..++++++|+.|.+.+=.+.. ..-..+..+++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 3455555444433321 1112233444455555554444422 334444444444444333321 11123334445555
Q ss_pred EEccCC
Q 017912 253 LNLDSN 258 (364)
Q Consensus 253 L~l~~n 258 (364)
||+|..
T Consensus 225 LDIS~~ 230 (699)
T KOG3665|consen 225 LDISRD 230 (699)
T ss_pred eecccc
Confidence 555443
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.72 E-value=7.1e-05 Score=61.71 Aligned_cols=102 Identities=22% Similarity=0.136 Sum_probs=49.4
Q ss_pred CcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEcc
Q 017912 226 LADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNI-PDVFGSKSYFMALDLS 304 (364)
Q Consensus 226 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~l~ 304 (364)
...+|+++|.+... ..+..++.|..|.+.+|+++..-|..-..+++|+.|.+.+|++.... -+-+..+|.|+.|.+-
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 34455555544311 12334455555555555555433333333455556666665554211 1124455566666666
Q ss_pred CCcCCCC---cchhcccCCCCCeEEccC
Q 017912 305 YNNLKGP---IPGSLSSSAYIGHLDLSH 329 (364)
Q Consensus 305 ~n~l~~~---~~~~l~~l~~L~~L~l~~ 329 (364)
+|.++.. -...++.+|+|+.||++.
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 6655431 122345566666666653
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=0.00019 Score=66.62 Aligned_cols=140 Identities=21% Similarity=0.288 Sum_probs=88.7
Q ss_pred cCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccC-CCCCCCchhhh
Q 017912 95 INPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADN-AVSGEIPSSLV 173 (364)
Q Consensus 95 ~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~l~ 173 (364)
+-+.+..+.++++|++++ +.++ .+|. + ..+|++|.+++|.--..+|..+. .+|++|++++| .+. .+|.
T Consensus 44 a~~r~~~~~~l~~L~Is~-c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~--- 112 (426)
T PRK15386 44 ITPQIEEARASGRLYIKD-CDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE--- 112 (426)
T ss_pred HHHHHHHhcCCCEEEeCC-CCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc---
Confidence 334466679999999995 5554 4452 2 24699999998654446666553 68999999998 444 5554
Q ss_pred cCCCCCEEEccCCcCC--CccCccCCCCCccchhhcCCcccc--ccccccccCCCCCcEEEcccCccccccchhhhCCCC
Q 017912 174 RLSSLKHLDLSNNQLS--GKIPADFGNLKMLSRALLRGNKLT--GSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLV 249 (364)
Q Consensus 174 ~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 249 (364)
+|+.|++..+... +.+|. +|+.|.+.+++.. ..+|..+ ..+|++|++++|... ..|..+ ..+
T Consensus 113 ---sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~L--P~S 178 (426)
T PRK15386 113 ---SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKL--PES 178 (426)
T ss_pred ---ccceEEeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCcccc--ccc
Confidence 5778888766543 12333 4667776543311 1112111 157999999998765 344333 258
Q ss_pred CCEEEccCCc
Q 017912 250 LSTLNLDSNL 259 (364)
Q Consensus 250 L~~L~l~~n~ 259 (364)
|+.|.++.+.
T Consensus 179 Lk~L~ls~n~ 188 (426)
T PRK15386 179 LQSITLHIEQ 188 (426)
T ss_pred CcEEEecccc
Confidence 9999998763
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.39 E-value=0.00028 Score=58.25 Aligned_cols=103 Identities=20% Similarity=0.142 Sum_probs=67.2
Q ss_pred CCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCC-cchhcccCCCCCeEE
Q 017912 248 LVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGP-IPGSLSSSAYIGHLD 326 (364)
Q Consensus 248 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~ 326 (364)
.+...+|+++|.+. .+ ..+..++.|..|.+.+|+|+.+-|..-.-+++|..|.+.+|.+... --.-+..+|+|++|.
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 35677888888775 22 3456677888888888888877666556667788888888876521 112245677888888
Q ss_pred ccCCcCcccCC----CCCCCCCCCcccccC
Q 017912 327 LSHNHLCGPIP----VGSPFDHLEASSFDS 352 (364)
Q Consensus 327 l~~N~l~g~ip----~~~~~~~l~~l~l~~ 352 (364)
+-+|+++..-- ..-.+++++.+|+.+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 88887653211 113455666666653
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.00023 Score=61.12 Aligned_cols=42 Identities=29% Similarity=0.448 Sum_probs=20.6
Q ss_pred cCCCCCCCEEEccCC--cCCCCcCccccCCCCCCEEEcccCCCC
Q 017912 124 ITSIASLRVLDLVGN--KLSGKIPDDIGNLQKLTVLNLADNAVS 165 (364)
Q Consensus 124 l~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~ 165 (364)
+..+++|++|.++.| ++.+.++.-...+++|+++++++|++.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 334455555555555 333333333344455555555555544
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.08 E-value=0.0019 Score=50.36 Aligned_cols=60 Identities=8% Similarity=0.127 Sum_probs=20.7
Q ss_pred hhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccC
Q 017912 243 ILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSY 305 (364)
Q Consensus 243 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 305 (364)
.+..+++++.+.+.. .+.......+..+++++.+++..+ +.......+.++ .++.+.+..
T Consensus 53 ~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 53 AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred eeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 334444445554433 222111223333455555555443 333333344444 555555543
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.04 E-value=0.0018 Score=50.49 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=3.9
Q ss_pred cCCCCCCEEEcc
Q 017912 149 GNLQKLTVLNLA 160 (364)
Q Consensus 149 ~~l~~L~~L~L~ 160 (364)
.++++|+.+.+.
T Consensus 32 ~~~~~l~~i~~~ 43 (129)
T PF13306_consen 32 SNCTSLKSINFP 43 (129)
T ss_dssp TT-TT-SEEEES
T ss_pred cccccccccccc
Confidence 333344444443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=6.9e-05 Score=64.82 Aligned_cols=84 Identities=20% Similarity=0.098 Sum_probs=44.5
Q ss_pred CCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCC-cchhcccCCCCCeEE
Q 017912 248 LVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGP-IPGSLSSSAYIGHLD 326 (364)
Q Consensus 248 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~ 326 (364)
.+.+.|++.++.++.. .....++.|+.|.|+-|+++..- .+..|++|++|+|..|.|.+. -...+.++|+|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3445555555555422 23345566666666666665332 245566666666666666531 112345556666666
Q ss_pred ccCCcCccc
Q 017912 327 LSHNHLCGP 335 (364)
Q Consensus 327 l~~N~l~g~ 335 (364)
|..|.=.|.
T Consensus 95 L~ENPCc~~ 103 (388)
T KOG2123|consen 95 LDENPCCGE 103 (388)
T ss_pred hccCCcccc
Confidence 666654443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.53 E-value=0.0018 Score=55.68 Aligned_cols=86 Identities=20% Similarity=0.234 Sum_probs=62.0
Q ss_pred hCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccC--CCccccCccccCCCCCCEEEccCCcCCCCcchh---cccC
Q 017912 245 GKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRN--ALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGS---LSSS 319 (364)
Q Consensus 245 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~---l~~l 319 (364)
..+..|+.+.+.+..++. + ..+..+++|++|.++.| ++++.++.....+++|+++++++|++.. +.. +..+
T Consensus 40 d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l 115 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKEL 115 (260)
T ss_pred ccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhh
Confidence 345566677777766652 1 23456789999999999 6666666656677999999999999873 333 4566
Q ss_pred CCCCeEEccCCcCcc
Q 017912 320 AYIGHLDLSHNHLCG 334 (364)
Q Consensus 320 ~~L~~L~l~~N~l~g 334 (364)
.+|..||+.+|..++
T Consensus 116 ~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCccc
Confidence 778889999887665
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.36 E-value=0.00011 Score=67.01 Aligned_cols=63 Identities=19% Similarity=0.139 Sum_probs=32.4
Q ss_pred cCCCCCCEEecCCCCCCcccCcccc-CCCCCCCEEEccCC-cCCCCcCc-cccCCCCCCEEEcccC
Q 017912 100 CQLDTLSTLVIADWKGISGQLPSCI-TSIASLRVLDLVGN-KLSGKIPD-DIGNLQKLTVLNLADN 162 (364)
Q Consensus 100 ~~l~~L~~L~l~~~~~l~~~~p~~l-~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n 162 (364)
.++++++.|.+.++..++...-..+ ..+++|+.|++..| .++..... -...+++|++|+++++
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc 226 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWC 226 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccC
Confidence 4566666666665555554433333 23566666666663 23322222 1234566666666655
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.0002 Score=62.06 Aligned_cols=98 Identities=26% Similarity=0.294 Sum_probs=52.2
Q ss_pred CCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccC--ccCCCCCccchh
Q 017912 128 ASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIP--ADFGNLKMLSRA 205 (364)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L 205 (364)
.+.+.|+..+|.+++. ....+++.|++|.|+-|.++.. ..+..+++|++|.|..|.+.. +. .-+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhH
Confidence 3455566666666521 1234566666666666666521 234566666666666666542 21 124566666666
Q ss_pred hcCCcccccccccc-----ccCCCCCcEEE
Q 017912 206 LLRGNKLTGSIPDS-----IGNMYRLADLD 230 (364)
Q Consensus 206 ~l~~n~~~~~~~~~-----l~~l~~L~~L~ 230 (364)
.|..|...|.-+.. +.-+++|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 66666655544322 23445555554
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.81 E-value=0.0012 Score=63.92 Aligned_cols=110 Identities=25% Similarity=0.231 Sum_probs=45.5
Q ss_pred CCCCCEEecCCCCCCccc-CccccCCCCCCCEEEccCC-cCCCCcC----ccccCCCCCCEEEcccCC-CCCCCchhhh-
Q 017912 102 LDTLSTLVIADWKGISGQ-LPSCITSIASLRVLDLVGN-KLSGKIP----DDIGNLQKLTVLNLADNA-VSGEIPSSLV- 173 (364)
Q Consensus 102 l~~L~~L~l~~~~~l~~~-~p~~l~~l~~L~~L~l~~n-~l~~~~~----~~~~~l~~L~~L~L~~n~-l~~~~p~~l~- 173 (364)
++.|+.+.+.++..++.. +-.....++.|++|+++++ ......+ .....+.+|+.++++.+. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455555555543333321 2223344556666666552 1111111 122334555555555554 3322222222
Q ss_pred cCCCCCEEEccCCc-CCCc-cCccCCCCCccchhhcCCcc
Q 017912 174 RLSSLKHLDLSNNQ-LSGK-IPADFGNLKMLSRALLRGNK 211 (364)
Q Consensus 174 ~l~~L~~L~l~~n~-~~~~-~~~~~~~l~~L~~L~l~~n~ 211 (364)
.+++|++|.+.++. ++.. +......+++|++|+++++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 24555555544444 2211 11112234445555555443
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.76 E-value=0.00016 Score=69.28 Aligned_cols=83 Identities=25% Similarity=0.281 Sum_probs=40.4
Q ss_pred CCEEEccCCcCCCCcCc----cccCCCCCCEEEcccCCCCCCCchhhh----cC-CCCCEEEccCCcCCCc----cCccC
Q 017912 130 LRVLDLVGNKLSGKIPD----DIGNLQKLTVLNLADNAVSGEIPSSLV----RL-SSLKHLDLSNNQLSGK----IPADF 196 (364)
Q Consensus 130 L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~p~~l~----~l-~~L~~L~l~~n~~~~~----~~~~~ 196 (364)
+..+.+.+|.+...... .+...+.|+.|++++|.+.+.--..+. .. ..+++|++..+.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66677777766633222 234456666677777666532221111 11 2344555555554432 22233
Q ss_pred CCCCccchhhcCCccc
Q 017912 197 GNLKMLSRALLRGNKL 212 (364)
Q Consensus 197 ~~l~~L~~L~l~~n~~ 212 (364)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 3445555555555544
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.18 E-value=0.0069 Score=31.23 Aligned_cols=12 Identities=58% Similarity=0.880 Sum_probs=5.4
Q ss_pred CCEEEccCCcCC
Q 017912 130 LRVLDLVGNKLS 141 (364)
Q Consensus 130 L~~L~l~~n~l~ 141 (364)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.17 E-value=0.0098 Score=30.64 Aligned_cols=11 Identities=64% Similarity=0.558 Sum_probs=4.5
Q ss_pred CEEEccCCcCC
Q 017912 299 MALDLSYNNLK 309 (364)
Q Consensus 299 ~~L~l~~n~l~ 309 (364)
++|++++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 34444444443
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.11 E-value=0.0028 Score=61.21 Aligned_cols=111 Identities=23% Similarity=0.103 Sum_probs=58.0
Q ss_pred CCCCCCEEEccCCcCCCC--cCccccCCCCCCEEEcccC-CCCCCCc----hhhhcCCCCCEEEccCCc-CCCccCccCC
Q 017912 126 SIASLRVLDLVGNKLSGK--IPDDIGNLQKLTVLNLADN-AVSGEIP----SSLVRLSSLKHLDLSNNQ-LSGKIPADFG 197 (364)
Q Consensus 126 ~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~p----~~l~~l~~L~~L~l~~n~-~~~~~~~~~~ 197 (364)
.++.|+.+.+..+.-... .-.....+++|+.|+++++ ......+ .....+.+|+.|+++++. ++...-..++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356777777776643322 2334456777777777762 1111111 122345677777777766 3322222222
Q ss_pred -CCCccchhhcCCcc-cccccc-ccccCCCCCcEEEcccCcc
Q 017912 198 -NLKMLSRALLRGNK-LTGSIP-DSIGNMYRLADLDLSMNQI 236 (364)
Q Consensus 198 -~l~~L~~L~l~~n~-~~~~~~-~~l~~l~~L~~L~l~~n~l 236 (364)
.+++|++|.+..+. ++...- .....++.|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 26677777766555 332211 2223456677777776654
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.18 E-value=0.0019 Score=61.93 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=17.8
Q ss_pred CCEEEccCCcCCC----CcchhcccCCCCCeEEccCCcC
Q 017912 298 FMALDLSYNNLKG----PIPGSLSSSAYIGHLDLSHNHL 332 (364)
Q Consensus 298 L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~N~l 332 (364)
+..+++..+.+.+ .++..+...+.+..++++.|..
T Consensus 378 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~ 416 (478)
T KOG4308|consen 378 LLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSL 416 (478)
T ss_pred cchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCcc
Confidence 4444554444443 2233344556666667766654
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.91 E-value=0.025 Score=47.04 Aligned_cols=73 Identities=21% Similarity=0.176 Sum_probs=35.7
Q ss_pred CCcccccCccccCCCCCCEEecCCCCCCcccCccccCC-CCCCCEEEccCC-cCCCCcCccccCCCCCCEEEccc
Q 017912 89 GYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITS-IASLRVLDLVGN-KLSGKIPDDIGNLQKLTVLNLAD 161 (364)
Q Consensus 89 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~-l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~ 161 (364)
..+.++--..+..++.++.|.+..+..+..---+.+++ .++|+.|++++| +|+..--..+..+++|+.|.+.+
T Consensus 111 s~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 111 SSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred chHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 34444444555566666666665444443322222222 356666666655 34433334445555555555543
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.80 E-value=0.12 Score=24.66 Aligned_cols=13 Identities=54% Similarity=0.864 Sum_probs=4.7
Q ss_pred CCCEEEccCCcCC
Q 017912 129 SLRVLDLVGNKLS 141 (364)
Q Consensus 129 ~L~~L~l~~n~l~ 141 (364)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444455444443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.94 E-value=0.0063 Score=51.61 Aligned_cols=86 Identities=20% Similarity=0.270 Sum_probs=46.5
Q ss_pred cCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccc
Q 017912 124 ITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLS 203 (364)
Q Consensus 124 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 203 (364)
+......+.||++.|++. .....|+.++.|..|+++.|++. ..|..+.....++.+++..|..+ ..|.++...++++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 334445555555555544 33334444555555666655555 45555555555555555555554 4555555666666
Q ss_pred hhhcCCccc
Q 017912 204 RALLRGNKL 212 (364)
Q Consensus 204 ~L~l~~n~~ 212 (364)
++++..+.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 655555543
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.04 E-value=0.056 Score=44.99 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=37.7
Q ss_pred CCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccc-cCccc-cCCCCCCEEEccCC-cCCCCcchhcccCCCCCeEE
Q 017912 250 LSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGN-IPDVF-GSKSYFMALDLSYN-NLKGPIPGSLSSSAYIGHLD 326 (364)
Q Consensus 250 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l-~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~ 326 (364)
++.++-++..+....-+.+..++.++.|.+.+|+-.+. --+.+ +-.++|+.|++++| +|++.....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 33444444444433333444444444444444432211 00011 12356666666666 45555555566666666666
Q ss_pred ccC
Q 017912 327 LSH 329 (364)
Q Consensus 327 l~~ 329 (364)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 654
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.76 E-value=0.46 Score=25.27 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=6.0
Q ss_pred CCCEEEcccCCCC
Q 017912 153 KLTVLNLADNAVS 165 (364)
Q Consensus 153 ~L~~L~L~~n~l~ 165 (364)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.76 E-value=0.46 Score=25.27 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=6.0
Q ss_pred CCCEEEcccCCCC
Q 017912 153 KLTVLNLADNAVS 165 (364)
Q Consensus 153 ~L~~L~L~~n~l~ 165 (364)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.65 E-value=0.08 Score=27.74 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=4.9
Q ss_pred CCCEEEccCCcCC
Q 017912 297 YFMALDLSYNNLK 309 (364)
Q Consensus 297 ~L~~L~l~~n~l~ 309 (364)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 82
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.54 E-value=0.14 Score=47.44 Aligned_cols=179 Identities=16% Similarity=0.067 Sum_probs=105.4
Q ss_pred cCCCCCCEEecCCCCCCcccCcccc-CCCCCCCEEEccCCcCCCC-cCccc-cCCCCCCEEEcccCC-CCCCCchhhh-c
Q 017912 100 CQLDTLSTLVIADWKGISGQLPSCI-TSIASLRVLDLVGNKLSGK-IPDDI-GNLQKLTVLNLADNA-VSGEIPSSLV-R 174 (364)
Q Consensus 100 ~~l~~L~~L~l~~~~~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~-~~~~~-~~l~~L~~L~L~~n~-l~~~~p~~l~-~ 174 (364)
+.+..+..+++..++.++.+---.+ ..+..|++|+.+++...+. .-..+ .+..+|+++-++.++ |+..--..++ +
T Consensus 265 ~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn 344 (483)
T KOG4341|consen 265 AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN 344 (483)
T ss_pred ccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcC
Confidence 3445566666655666665432112 4567888888888754322 21222 456888888888876 3322222233 5
Q ss_pred CCCCCEEEccCCcCC--CccCccCCCCCccchhhcCCcccccc-----ccccccCCCCCcEEEcccCccc-cccchhhhC
Q 017912 175 LSSLKHLDLSNNQLS--GKIPADFGNLKMLSRALLRGNKLTGS-----IPDSIGNMYRLADLDLSMNQIS-GPIPDILGK 246 (364)
Q Consensus 175 l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~-----~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~ 246 (364)
...|+.+++..+... +.+...-.+++.|+++.++++..... +...-..+..|..+.++++... ....+.+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 678888888777542 22333445788899998887653211 1122245667888888888753 344456677
Q ss_pred CCCCCEEEccCCcCC--cccchhhhCCCCCCEEE
Q 017912 247 MLVLSTLNLDSNLLS--GKIPSTLLSNTGMGILN 278 (364)
Q Consensus 247 l~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~ 278 (364)
+++|+.+++..+.-. ..+...-..+++++...
T Consensus 425 c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 425 CRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred CcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 889999888776532 12222334456655443
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.62 E-value=0.017 Score=49.05 Aligned_cols=88 Identities=23% Similarity=0.298 Sum_probs=68.6
Q ss_pred cccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCC
Q 017912 147 DIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRL 226 (364)
Q Consensus 147 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 226 (364)
.+......+.||++.|++. .+-..+..++.+..|+++.|.+. .+|+.+.....++.+++..|..+ ..|.++.+.+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4556677888888888776 44455666778888889888876 77888888888888888888777 678888888888
Q ss_pred cEEEcccCccc
Q 017912 227 ADLDLSMNQIS 237 (364)
Q Consensus 227 ~~L~l~~n~l~ 237 (364)
++++.-.|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 88888887754
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=69.66 E-value=3.5 Score=22.11 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=11.4
Q ss_pred CCCCeEEccCCcCcccCCC
Q 017912 320 AYIGHLDLSHNHLCGPIPV 338 (364)
Q Consensus 320 ~~L~~L~l~~N~l~g~ip~ 338 (364)
++|+.|++++|+++ .+|.
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35677777777766 4443
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.31 E-value=4.5 Score=21.67 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=11.3
Q ss_pred CCCCCeEEccCCcCc
Q 017912 319 SAYIGHLDLSHNHLC 333 (364)
Q Consensus 319 l~~L~~L~l~~N~l~ 333 (364)
+.+|+.|+++.|+|.
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356788888888875
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.46 E-value=2.2 Score=41.18 Aligned_cols=64 Identities=20% Similarity=0.149 Sum_probs=37.4
Q ss_pred hCCCCCCEEEccCCcCCcc--cchhhhCCCCCCEEEcccC--CCccccCcccc--CCCCCCEEEccCCcCCC
Q 017912 245 GKMLVLSTLNLDSNLLSGK--IPSTLLSNTGMGILNLSRN--ALGGNIPDVFG--SKSYFMALDLSYNNLKG 310 (364)
Q Consensus 245 ~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n--~l~~~~~~~l~--~~~~L~~L~l~~n~l~~ 310 (364)
.+.+.+..+.+++|++... +...-...++|+.|+|++| .+... .++. +...|++|-+.||.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 3566777788888877521 1122234577888888888 33321 1222 23456778888887754
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=67.64 E-value=2.3 Score=23.10 Aligned_cols=13 Identities=46% Similarity=0.498 Sum_probs=6.4
Q ss_pred CCCEEEccCCcCC
Q 017912 297 YFMALDLSYNNLK 309 (364)
Q Consensus 297 ~L~~L~l~~n~l~ 309 (364)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4455555555543
No 88
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=55.73 E-value=5.2 Score=27.62 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHH
Q 017912 1 MALPLILLTVFLAVI 15 (364)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (364)
|++..+++++++++.
T Consensus 1 mKLt~vliVavLllt 15 (75)
T PF02950_consen 1 MKLTCVLIVAVLLLT 15 (75)
T ss_dssp ---------------
T ss_pred CCcchHHHHHHHHHH
Confidence 677755544444443
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.20 E-value=7.7 Score=37.60 Aligned_cols=64 Identities=27% Similarity=0.239 Sum_probs=32.7
Q ss_pred CCCCCcEEEcccCccccc--cchhhhCCCCCCEEEccCC--cCCcccchhhhC--CCCCCEEEcccCCCccc
Q 017912 222 NMYRLADLDLSMNQISGP--IPDILGKMLVLSTLNLDSN--LLSGKIPSTLLS--NTGMGILNLSRNALGGN 287 (364)
Q Consensus 222 ~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~--~~~L~~L~l~~n~l~~~ 287 (364)
+.+.+..+.+++|++... +...-...++|+.|+|++| .+.. ..++.+ ...|++|.+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 344566666777766421 1112234566777777777 2221 111211 23466777777776543
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=49.81 E-value=47 Score=31.86 Aligned_cols=13 Identities=31% Similarity=0.347 Sum_probs=6.8
Q ss_pred CCEEEccCCcCCc
Q 017912 250 LSTLNLDSNLLSG 262 (364)
Q Consensus 250 L~~L~l~~n~l~~ 262 (364)
+++|.+..|.+.|
T Consensus 356 ~q~l~~rdnnldg 368 (553)
T KOG4242|consen 356 VQVLLQRDNNLDG 368 (553)
T ss_pred eeEeecccccccc
Confidence 5555555555543
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=49.45 E-value=14 Score=19.37 Aligned_cols=11 Identities=55% Similarity=0.742 Sum_probs=5.4
Q ss_pred CCCCEEEccCC
Q 017912 128 ASLRVLDLVGN 138 (364)
Q Consensus 128 ~~L~~L~l~~n 138 (364)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.51 E-value=48 Score=38.98 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=28.9
Q ss_pred EcccCCCccccCccccCCCCCCEEEccCCcCCC
Q 017912 278 NLSRNALGGNIPDVFGSKSYFMALDLSYNNLKG 310 (364)
Q Consensus 278 ~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 310 (364)
||++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 588999997777788899999999999998875
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=25.38 E-value=91 Score=30.03 Aligned_cols=37 Identities=22% Similarity=0.098 Sum_probs=20.9
Q ss_pred EEEccCCcCCC-CcchhcccCCCCCeEEccCCcCcccC
Q 017912 300 ALDLSYNNLKG-PIPGSLSSSAYIGHLDLSHNHLCGPI 336 (364)
Q Consensus 300 ~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~N~l~g~i 336 (364)
.+++..|...+ ...+.-..-..+++++.+.|++.|+.
T Consensus 333 rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg 370 (553)
T KOG4242|consen 333 RLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEG 370 (553)
T ss_pred cCChhhccccccchhhccccceeeeEeecccccccccc
Confidence 45555554433 22222223345889999999876644
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.73 E-value=62 Score=38.15 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=26.9
Q ss_pred EccCCcCCcccchhhhCCCCCCEEEcccCCCc
Q 017912 254 NLDSNLLSGKIPSTLLSNTGMGILNLSRNALG 285 (364)
Q Consensus 254 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 285 (364)
+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57899998655677888899999999999876
Done!