Query 017912
Match_columns 364
No_of_seqs 359 out of 4092
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 06:55:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 5.8E-49 2E-53 357.9 22.4 305 19-364 1-312 (313)
2 3rgz_A Protein brassinosteroid 100.0 8.7E-44 3E-48 360.8 22.7 329 16-355 4-355 (768)
3 4eco_A Uncharacterized protein 100.0 4.6E-43 1.6E-47 348.2 15.9 316 21-356 27-501 (636)
4 3rgz_A Protein brassinosteroid 100.0 6.9E-42 2.4E-46 346.9 24.1 275 89-364 404-748 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 1.6E-40 5.6E-45 336.7 17.5 310 19-356 264-741 (876)
6 3v47_A TOLL-like receptor 5B a 100.0 2.6E-37 8.8E-42 295.3 25.2 282 66-361 30-413 (455)
7 4fcg_A Uncharacterized protein 100.0 1.3E-36 4.5E-41 278.1 15.3 278 20-333 23-314 (328)
8 2id5_A Lingo-1, leucine rich r 100.0 4.2E-35 1.4E-39 281.7 22.6 292 56-361 13-338 (477)
9 3o6n_A APL1; leucine-rich repe 100.0 5.2E-34 1.8E-38 267.1 21.5 255 97-359 63-355 (390)
10 3t6q_A CD180 antigen; protein- 100.0 3.5E-34 1.2E-38 283.2 21.0 270 89-361 288-565 (606)
11 3oja_B Anopheles plasmodium-re 100.0 6.1E-34 2.1E-38 280.9 22.3 264 89-359 61-361 (597)
12 1ogq_A PGIP-2, polygalacturona 100.0 2.6E-35 8.9E-40 267.8 11.4 215 89-331 87-302 (313)
13 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-32 5.9E-37 271.1 25.9 143 219-361 419-563 (606)
14 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-32 5.7E-37 272.0 25.0 118 244-361 465-585 (635)
15 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-32 5.4E-37 266.5 23.6 161 197-361 321-486 (520)
16 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.8E-32 1.6E-36 265.6 26.0 157 201-361 354-515 (562)
17 3v47_A TOLL-like receptor 5B a 100.0 6.4E-32 2.2E-36 257.9 24.1 260 66-339 54-414 (455)
18 4eco_A Uncharacterized protein 100.0 7.9E-33 2.7E-37 274.7 15.2 264 88-357 192-527 (636)
19 2z80_A TOLL-like receptor 2, v 100.0 2.9E-32 1E-36 251.9 17.3 256 103-360 52-318 (353)
20 2z81_A CD282 antigen, TOLL-lik 100.0 8.6E-32 2.9E-36 263.0 21.2 286 53-355 4-422 (549)
21 3t6q_A CD180 antigen; protein- 100.0 2.8E-31 9.6E-36 262.4 24.1 275 67-357 255-537 (606)
22 1xku_A Decorin; proteoglycan, 100.0 1.1E-30 3.8E-35 239.0 25.7 277 56-353 33-329 (330)
23 1ziw_A TOLL-like receptor 3; i 100.0 3.2E-31 1.1E-35 265.4 22.1 272 89-361 339-627 (680)
24 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-30 3.9E-35 239.2 23.9 279 53-354 33-331 (332)
25 2z63_A TOLL-like receptor 4, v 100.0 5.5E-31 1.9E-35 258.3 23.2 143 220-362 392-537 (570)
26 2id5_A Lingo-1, leucine rich r 100.0 2.9E-31 9.8E-36 255.0 20.7 262 98-360 99-360 (477)
27 3vq2_A TLR4, TOLL-like recepto 100.0 9.8E-31 3.4E-35 258.5 24.4 125 66-191 32-168 (606)
28 3zyj_A Leucine-rich repeat-con 100.0 1.5E-30 5.2E-35 247.4 23.5 232 128-361 64-297 (440)
29 2z66_A Variable lymphocyte rec 100.0 6.1E-31 2.1E-35 238.2 19.7 230 103-334 28-262 (306)
30 3zyi_A Leucine-rich repeat-con 100.0 1.4E-30 4.9E-35 248.4 22.9 232 128-361 75-308 (452)
31 3j0a_A TOLL-like receptor 5; m 100.0 5E-31 1.7E-35 269.9 21.1 286 56-357 16-376 (844)
32 2z7x_B TOLL-like receptor 1, v 100.0 8.2E-31 2.8E-35 254.4 21.5 133 221-356 321-457 (520)
33 2z66_A Variable lymphocyte rec 100.0 1.1E-31 3.9E-36 243.0 14.1 232 128-360 28-265 (306)
34 1xku_A Decorin; proteoglycan, 100.0 4.3E-30 1.5E-34 235.1 23.6 258 89-357 41-307 (330)
35 1ziw_A TOLL-like receptor 3; i 100.0 2E-30 6.8E-35 259.7 23.3 275 66-354 25-364 (680)
36 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-30 5.4E-35 254.1 20.5 137 221-360 358-514 (549)
37 2ft3_A Biglycan; proteoglycan, 100.0 4.6E-30 1.6E-34 235.1 20.8 265 68-357 35-308 (332)
38 4ecn_A Leucine-rich repeat pro 100.0 1.4E-30 4.8E-35 264.1 18.7 139 94-237 480-632 (876)
39 3j0a_A TOLL-like receptor 5; m 100.0 8E-30 2.7E-34 261.0 24.1 263 89-356 83-394 (844)
40 4fcg_A Uncharacterized protein 100.0 2.8E-30 9.7E-35 236.0 18.5 225 126-355 79-313 (328)
41 3o6n_A APL1; leucine-rich repe 100.0 1.9E-29 6.6E-34 236.1 21.2 265 88-361 78-379 (390)
42 1ozn_A Reticulon 4 receptor; N 100.0 7.2E-30 2.4E-34 228.8 17.2 235 102-338 31-266 (285)
43 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-29 4.7E-34 248.2 20.5 269 66-356 52-463 (562)
44 1ozn_A Reticulon 4 receptor; N 100.0 1.3E-29 4.6E-34 227.0 18.7 251 106-360 14-265 (285)
45 3oja_B Anopheles plasmodium-re 100.0 2.6E-29 8.8E-34 247.9 21.1 265 87-360 83-384 (597)
46 1wwl_A Monocyte differentiatio 100.0 1.8E-31 6.1E-36 242.4 4.0 231 94-333 56-309 (312)
47 4fmz_A Internalin; leucine ric 100.0 2.9E-28 1E-32 224.4 25.3 240 99-355 106-345 (347)
48 3zyi_A Leucine-rich repeat-con 100.0 1.3E-28 4.4E-33 234.9 23.3 228 103-333 75-303 (452)
49 3zyj_A Leucine-rich repeat-con 100.0 2.5E-28 8.4E-33 232.2 23.2 228 103-333 64-292 (440)
50 1wwl_A Monocyte differentiatio 100.0 6.4E-31 2.2E-35 238.8 4.5 250 98-357 38-310 (312)
51 2z80_A TOLL-like receptor 2, v 100.0 3.5E-29 1.2E-33 231.2 16.2 271 50-338 27-319 (353)
52 4fmz_A Internalin; leucine ric 100.0 2.4E-27 8.1E-32 218.3 24.3 252 89-360 76-328 (347)
53 2z63_A TOLL-like receptor 4, v 100.0 5.5E-28 1.9E-32 237.0 20.3 268 66-354 28-358 (570)
54 1o6v_A Internalin A; bacterial 100.0 3.1E-27 1.1E-31 226.3 24.7 259 66-356 68-366 (466)
55 3bz5_A Internalin-J, INLJ; leu 100.0 4.1E-27 1.4E-31 224.5 25.1 249 66-354 42-297 (457)
56 1o6v_A Internalin A; bacterial 100.0 7.9E-27 2.7E-31 223.4 24.7 217 124-357 173-389 (466)
57 3oja_A Leucine-rich immune mol 100.0 8.4E-29 2.9E-33 238.0 10.6 247 100-361 31-287 (487)
58 2z62_A TOLL-like receptor 4, v 100.0 2.6E-27 8.9E-32 211.1 17.8 218 119-339 21-243 (276)
59 3o53_A Protein LRIM1, AGAP0063 100.0 2.5E-28 8.4E-33 222.2 11.1 250 89-353 20-272 (317)
60 3o53_A Protein LRIM1, AGAP0063 100.0 4.7E-29 1.6E-33 227.0 6.0 244 67-338 35-281 (317)
61 2o6q_A Variable lymphocyte rec 99.9 1.6E-26 5.4E-31 205.5 20.4 184 128-311 37-220 (270)
62 3oja_A Leucine-rich immune mol 99.9 1E-27 3.4E-32 230.6 13.1 223 124-359 30-253 (487)
63 3bz5_A Internalin-J, INLJ; leu 99.9 3.1E-26 1.1E-30 218.3 23.1 252 66-356 64-352 (457)
64 2z62_A TOLL-like receptor 4, v 99.9 1.6E-26 5.5E-31 206.0 19.1 208 103-312 28-240 (276)
65 2o6q_A Variable lymphocyte rec 99.9 4.5E-26 1.5E-30 202.5 21.3 203 129-334 17-219 (270)
66 1p9a_G Platelet glycoprotein I 99.9 1.8E-26 6.2E-31 207.1 18.3 203 124-333 6-208 (290)
67 4g8a_A TOLL-like receptor 4; l 99.9 5.2E-26 1.8E-30 225.3 23.4 135 66-214 52-187 (635)
68 2ast_B S-phase kinase-associat 99.9 3.5E-27 1.2E-31 216.1 5.6 266 51-339 34-312 (336)
69 1p9a_G Platelet glycoprotein I 99.9 6E-25 2E-29 197.2 19.9 205 98-310 5-209 (290)
70 3rfs_A Internalin B, repeat mo 99.9 2.1E-25 7.2E-30 198.4 16.7 204 124-338 37-240 (272)
71 1jl5_A Outer protein YOPM; leu 99.9 6.7E-26 2.3E-30 215.9 14.1 248 67-357 12-291 (454)
72 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-25 6E-30 219.8 16.2 262 43-356 11-297 (622)
73 1jl5_A Outer protein YOPM; leu 99.9 2E-24 6.9E-29 205.7 22.8 238 89-357 141-410 (454)
74 3rfs_A Internalin B, repeat mo 99.9 5.3E-25 1.8E-29 195.8 15.3 212 98-321 36-247 (272)
75 2ca6_A RAN GTPase-activating p 99.9 1.5E-26 5E-31 216.2 4.3 242 95-337 24-320 (386)
76 1z7x_W Ribonuclease inhibitor; 99.9 4.1E-27 1.4E-31 224.9 -1.3 274 67-354 86-409 (461)
77 4glp_A Monocyte differentiatio 99.9 6.1E-25 2.1E-29 199.1 10.8 199 128-332 91-306 (310)
78 3goz_A Leucine-rich repeat-con 99.9 1.2E-25 3.9E-30 208.3 5.4 246 89-335 8-299 (362)
79 4glp_A Monocyte differentiatio 99.9 2.4E-24 8.3E-29 195.2 14.0 224 128-356 64-307 (310)
80 3m19_A Variable lymphocyte rec 99.9 1.5E-23 5E-28 184.2 18.1 179 105-311 16-194 (251)
81 1z7x_W Ribonuclease inhibitor; 99.9 4.5E-26 1.5E-30 217.7 1.6 274 66-355 113-439 (461)
82 2xwt_C Thyrotropin receptor; s 99.9 2.1E-24 7.2E-29 188.1 11.8 195 129-329 32-235 (239)
83 3goz_A Leucine-rich repeat-con 99.9 2.1E-25 7E-30 206.7 5.0 250 107-357 2-298 (362)
84 2ca6_A RAN GTPase-activating p 99.9 1.2E-25 3.9E-30 210.1 2.3 241 119-359 23-319 (386)
85 2xwt_C Thyrotropin receptor; s 99.9 4.8E-24 1.6E-28 185.9 11.8 205 143-355 25-238 (239)
86 3m19_A Variable lymphocyte rec 99.9 5.5E-23 1.9E-27 180.5 18.0 180 154-336 16-195 (251)
87 1h6u_A Internalin H; cell adhe 99.9 5E-23 1.7E-27 186.3 17.6 195 99-310 37-231 (308)
88 2ast_B S-phase kinase-associat 99.9 1.5E-24 5.2E-29 198.5 7.4 244 104-357 48-307 (336)
89 1h6u_A Internalin H; cell adhe 99.9 1.4E-22 4.9E-27 183.3 16.2 195 124-334 37-231 (308)
90 3g06_A SSPH2 (leucine-rich rep 99.9 5.9E-22 2E-26 194.7 21.5 225 66-338 61-302 (622)
91 4ay9_X Follicle-stimulating ho 99.9 5.7E-22 2E-26 182.6 12.9 218 129-350 31-253 (350)
92 2o6s_A Variable lymphocyte rec 99.9 1.7E-21 5.9E-26 166.0 14.5 158 153-317 29-186 (208)
93 3cvr_A Invasion plasmid antige 99.9 3.1E-21 1.1E-25 187.5 17.3 188 103-319 59-253 (571)
94 2o6s_A Variable lymphocyte rec 99.9 1.8E-21 6.1E-26 165.9 13.6 161 104-296 29-189 (208)
95 3cvr_A Invasion plasmid antige 99.9 1.3E-21 4.5E-26 190.1 12.6 196 56-295 50-253 (571)
96 2v9t_B SLIT homolog 2 protein 99.9 5.8E-21 2E-25 164.2 13.4 137 225-361 33-170 (220)
97 4ay9_X Follicle-stimulating ho 99.8 2.8E-20 9.4E-25 171.3 16.6 221 103-330 30-256 (350)
98 2xot_A Amphoterin-induced prot 99.8 4.7E-21 1.6E-25 177.2 10.8 181 155-361 21-207 (361)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 2.5E-20 8.5E-25 160.2 13.0 157 178-337 13-170 (220)
100 3e6j_A Variable lymphocyte rec 99.8 1.1E-19 3.6E-24 157.3 16.0 162 46-238 12-173 (229)
101 1h6t_A Internalin B; cell adhe 99.8 7.8E-20 2.7E-24 163.9 14.9 173 124-310 42-214 (291)
102 3e6j_A Variable lymphocyte rec 99.8 1.1E-19 3.7E-24 157.3 15.2 136 224-360 40-176 (229)
103 4b8c_D Glucose-repressible alc 99.8 1.4E-21 4.7E-26 196.2 2.8 262 21-309 129-404 (727)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 2.9E-20 1E-24 159.8 10.3 157 154-313 13-170 (220)
105 1h6t_A Internalin B; cell adhe 99.8 1E-19 3.4E-24 163.2 13.6 174 99-287 42-215 (291)
106 3ogk_B Coronatine-insensitive 99.8 4E-22 1.4E-26 196.2 -2.5 133 223-355 377-525 (592)
107 2xot_A Amphoterin-induced prot 99.8 1.1E-19 3.7E-24 168.1 13.0 177 131-310 21-203 (361)
108 2v9t_B SLIT homolog 2 protein 99.8 2.9E-19 9.9E-24 153.5 14.7 153 155-310 14-166 (220)
109 1m9s_A Internalin B; cell inva 99.8 1.8E-19 6.3E-24 176.7 14.7 174 124-311 39-212 (605)
110 1m9s_A Internalin B; cell inva 99.8 3.6E-19 1.2E-23 174.7 15.9 177 99-290 39-215 (605)
111 1dce_A Protein (RAB geranylger 99.8 2.3E-22 7.7E-27 196.2 -6.9 120 225-349 442-566 (567)
112 3ogk_B Coronatine-insensitive 99.8 6.8E-21 2.3E-25 187.4 1.4 217 118-335 283-528 (592)
113 4ezg_A Putative uncharacterize 99.8 5.6E-19 1.9E-23 149.1 12.6 105 151-259 43-147 (197)
114 4ezg_A Putative uncharacterize 99.8 8.4E-19 2.9E-23 148.0 12.9 153 125-285 41-194 (197)
115 1xeu_A Internalin C; cellular 99.8 7.4E-19 2.5E-23 155.2 8.4 170 102-287 18-187 (263)
116 1xeu_A Internalin C; cellular 99.8 8.5E-19 2.9E-23 154.8 7.6 171 126-311 17-187 (263)
117 1w8a_A SLIT protein; signaling 99.8 1.6E-18 5.4E-23 145.7 8.3 177 179-362 11-189 (192)
118 1dce_A Protein (RAB geranylger 99.7 8.1E-21 2.8E-25 185.2 -7.1 196 125-327 346-567 (567)
119 1w8a_A SLIT protein; signaling 99.7 7.1E-18 2.4E-22 141.7 11.3 131 155-288 11-142 (192)
120 4b8c_D Glucose-repressible alc 99.7 4.6E-19 1.6E-23 177.9 4.3 220 103-335 173-406 (727)
121 2p1m_B Transport inhibitor res 99.7 2.9E-19 9.8E-24 175.8 0.6 132 223-355 371-518 (594)
122 2wfh_A SLIT homolog 2 protein 99.7 2.8E-17 9.6E-22 138.1 12.1 130 228-361 14-144 (193)
123 2ell_A Acidic leucine-rich nuc 99.7 7.8E-17 2.7E-21 132.2 10.8 132 176-333 24-160 (168)
124 2p1m_B Transport inhibitor res 99.7 7.1E-19 2.4E-23 173.0 -2.3 98 89-186 115-221 (594)
125 2ell_A Acidic leucine-rich nuc 99.7 1.3E-16 4.4E-21 130.9 11.0 134 150-285 22-160 (168)
126 2je0_A Acidic leucine-rich nuc 99.7 8.4E-17 2.9E-21 129.3 8.8 125 202-328 19-148 (149)
127 2o6r_A Variable lymphocyte rec 99.7 5E-16 1.7E-20 128.5 12.6 133 202-337 9-141 (177)
128 2je0_A Acidic leucine-rich nuc 99.7 2.1E-16 7.2E-21 126.9 9.2 127 176-304 17-148 (149)
129 2o6r_A Variable lymphocyte rec 99.7 8.6E-16 3E-20 127.1 12.4 134 177-313 8-141 (177)
130 3sb4_A Hypothetical leucine ri 99.6 9.6E-17 3.3E-21 146.3 6.2 195 151-349 100-327 (329)
131 2wfh_A SLIT homolog 2 protein 99.6 1.4E-15 4.9E-20 127.6 12.8 128 179-310 13-140 (193)
132 3g39_A Variable lymphocyte rec 99.6 1.4E-14 4.8E-19 119.0 11.0 109 226-337 11-119 (170)
133 3sb4_A Hypothetical leucine ri 99.6 2.5E-15 8.7E-20 136.9 6.8 243 101-355 23-309 (329)
134 1a9n_A U2A', U2A'; complex (nu 99.6 8.7E-15 3E-19 120.9 9.3 104 177-284 43-152 (176)
135 1ds9_A Outer arm dynein; leuci 99.6 4E-17 1.4E-21 137.7 -5.7 112 171-287 43-155 (198)
136 1a9n_A U2A', U2A'; complex (nu 99.5 8.4E-15 2.9E-19 121.0 8.1 104 225-332 43-152 (176)
137 1ds9_A Outer arm dynein; leuci 99.5 3.1E-17 1.1E-21 138.4 -6.8 149 173-326 15-180 (198)
138 2r9u_A Variable lymphocyte rec 99.5 3.5E-14 1.2E-18 117.0 11.0 105 227-334 15-119 (174)
139 4fdw_A Leucine rich hypothetic 99.5 6E-13 2E-17 124.2 20.5 225 96-333 129-358 (401)
140 4fdw_A Leucine rich hypothetic 99.5 1.2E-12 4.1E-17 122.2 19.1 231 91-332 146-382 (401)
141 3g39_A Variable lymphocyte rec 99.5 1.7E-13 5.8E-18 112.4 11.0 109 201-312 10-118 (170)
142 2r9u_A Variable lymphocyte rec 99.5 4.2E-13 1.4E-17 110.5 11.0 106 203-311 15-120 (174)
143 2ifg_A High affinity nerve gro 99.4 3.7E-13 1.3E-17 123.3 10.2 103 228-333 12-116 (347)
144 3un9_A NLR family member X1; l 99.4 1.5E-14 5E-19 133.8 -0.4 170 128-317 72-260 (372)
145 3un9_A NLR family member X1; l 99.4 3.5E-14 1.2E-18 131.3 0.4 135 200-334 101-253 (372)
146 2ifg_A High affinity nerve gro 99.3 2E-11 6.7E-16 111.8 10.9 106 203-311 11-118 (347)
147 2ra8_A Uncharacterized protein 99.1 1E-10 3.6E-15 107.3 5.8 84 246-331 250-341 (362)
148 2ra8_A Uncharacterized protein 99.0 2.6E-10 8.9E-15 104.6 6.1 112 223-334 192-321 (362)
149 4fs7_A Uncharacterized protein 99.0 2.4E-08 8.2E-13 92.9 18.2 61 268-330 293-353 (394)
150 4fs7_A Uncharacterized protein 98.9 1.9E-08 6.3E-13 93.7 14.9 148 175-330 229-376 (394)
151 4gt6_A Cell surface protein; l 98.9 6.5E-08 2.2E-12 89.9 17.1 108 220-331 261-368 (394)
152 1io0_A Tropomodulin; LRR prote 98.7 8.2E-09 2.8E-13 85.5 4.4 116 218-333 30-164 (185)
153 4gt6_A Cell surface protein; l 98.6 1.1E-06 3.7E-11 81.6 17.4 131 195-332 260-390 (394)
154 3rw6_A Nuclear RNA export fact 98.6 1.4E-09 4.6E-14 95.1 -2.5 79 150-230 168-257 (267)
155 1io0_A Tropomodulin; LRR prote 98.5 3E-08 1E-12 82.1 2.8 119 171-309 31-164 (185)
156 4h09_A Hypothetical leucine ri 98.5 6.1E-06 2.1E-10 76.0 18.7 107 220-329 236-342 (379)
157 3rw6_A Nuclear RNA export fact 98.5 2.5E-08 8.5E-13 87.0 1.9 81 245-326 167-257 (267)
158 4h09_A Hypothetical leucine ri 98.5 1.7E-05 5.7E-10 73.0 19.6 124 222-350 215-340 (379)
159 3e4g_A ATP synthase subunit S, 98.2 1.2E-06 4E-11 71.2 4.4 83 225-307 62-150 (176)
160 3e4g_A ATP synthase subunit S, 98.2 6.9E-07 2.4E-11 72.5 3.0 84 248-331 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 7.3E-05 2.5E-09 61.7 6.4 113 220-332 37-169 (197)
162 3rfe_A Platelet glycoprotein I 97.5 9.6E-05 3.3E-09 56.9 5.1 54 276-331 12-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00039 1.3E-08 57.4 4.3 90 241-330 34-136 (197)
164 3rfe_A Platelet glycoprotein I 96.8 0.0031 1.1E-07 48.3 6.8 58 251-310 11-69 (130)
165 2lz0_A Uncharacterized protein 49.3 25 0.00086 24.8 4.6 38 97-136 14-51 (100)
166 2lz0_A Uncharacterized protein 34.3 53 0.0018 23.0 4.3 12 124-135 16-27 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.8e-49 Score=357.92 Aligned_cols=305 Identities=32% Similarity=0.651 Sum_probs=225.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCC-CccceEecCCC--CceEEEEcCCCCCchhhhhcCCCCCccc-
Q 017912 19 GACSPSDKAALLALKSSLNEPYLGIFASWT-GDNCCT-NWYGVSCDPTT--RRVTDISLRGESEDPILVKAGRSGYMTG- 93 (364)
Q Consensus 19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~W~-~~~~c~-~w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~~~- 93 (364)
+.|.++|++||++||+++.++. .+++|. +.+||. .|.||.|+... ++|+.+++++ +.++|
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~--~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~-------------~~l~~~ 65 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-------------LNLPKP 65 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCG--GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEEC-------------CCCSSC
T ss_pred CCCCHHHHHHHHHHHHhcCCcc--cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCC-------------CCccCC
Confidence 3689999999999999997653 678997 456773 39999998654 7899999987 55655
Q ss_pred -ccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhh
Q 017912 94 -SINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSL 172 (364)
Q Consensus 94 -~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 172 (364)
.+|+.+.++++|++|++++++.+.+.+|..+.++++|++|++++|.+++.+|..+
T Consensus 66 ~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~------------------------ 121 (313)
T 1ogq_A 66 YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL------------------------ 121 (313)
T ss_dssp EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG------------------------
T ss_pred cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH------------------------
Confidence 5555555555555555552244555555555555555555555555544444444
Q ss_pred hcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCC-CCcEEEcccCccccccchhhhCCCCCC
Q 017912 173 VRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMY-RLADLDLSMNQISGPIPDILGKMLVLS 251 (364)
Q Consensus 173 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~ 251 (364)
.++++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+.+++ +|++|++++|.+++.+|..++.++ |+
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence 4444555555555554444444455555555555555555555555566665 677777777777777777777776 88
Q ss_pred EEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCc
Q 017912 252 TLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNH 331 (364)
Q Consensus 252 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~ 331 (364)
+|++++|.+++..|..+..+++|++|++++|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 888888888877788888888888889988888877665 7788999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 017912 332 LCGPIPVGSPFDHLEASSFDSNDCLCGNPLRTC 364 (364)
Q Consensus 332 l~g~ip~~~~~~~l~~l~l~~n~~~c~~~~~~~ 364 (364)
++|.+|....+++|+.+++.+|++.|+.|+++|
T Consensus 280 l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 280 LCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp EEEECCCSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred ccccCCCCccccccChHHhcCCCCccCCCCCCC
Confidence 999999998999999999999999999999988
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.7e-44 Score=360.82 Aligned_cols=329 Identities=25% Similarity=0.368 Sum_probs=243.7
Q ss_pred hccCCCCHHHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCCCccceEecCCCCceEEEEcCCCCCchh-------hhhc--
Q 017912 16 SGVGACSPSDKAALLALKSSLNEPYLGIFASWT-GDNCCTNWYGVSCDPTTRRVTDISLRGESEDPI-------LVKA-- 85 (364)
Q Consensus 16 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~W~-~~~~c~~w~gv~c~~~~~~v~~l~l~~~~~~~~-------~~~~-- 85 (364)
++++++.++|++||++||+++.++. .+++|. +.+||. |.||+|+ .++|+++++++...... +..+
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~--~l~~W~~~~~~C~-w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~ 78 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKN--LLPDWSSNKNPCT-FDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTG 78 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTT--SSTTCCTTSCGGG-STTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTT
T ss_pred CccccCCHHHHHHHHHHHhhCCCcc--cccCCCCCCCCcC-CcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCc
Confidence 4555667899999999999998654 789997 678887 9999998 58999999998432211 1111
Q ss_pred -C-CCCCcccc--cCccccCCCCCCEEecCCCCCCcccCcc--ccCCCCCCCEEEccCCcCCCCcCccc-cCCCCCCEEE
Q 017912 86 -G-RSGYMTGS--INPAICQLDTLSTLVIADWKGISGQLPS--CITSIASLRVLDLVGNKLSGKIPDDI-GNLQKLTVLN 158 (364)
Q Consensus 86 -~-~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ 158 (364)
. ..+...+. +|+.++++++|++|+++ .+.++|.+|. .++++++|++|++++|.+.+.+|..+ .++++|++|+
T Consensus 79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 157 (768)
T 3rgz_A 79 LESLFLSNSHINGSVSGFKCSASLTSLDLS-RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157 (768)
T ss_dssp CCEEECTTSCEEECCCCCCCCTTCCEEECC-SSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred ccccCCcCCCcCCCchhhccCCCCCEEECC-CCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence 0 11222232 34778889999999998 4888888888 88999999999999999888777766 7888999999
Q ss_pred cccCCCCCCCchh---hhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCc
Q 017912 159 LADNAVSGEIPSS---LVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQ 235 (364)
Q Consensus 159 L~~n~l~~~~p~~---l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 235 (364)
+++|.+++..|.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+++.+|. ++++++|++|++++|.
T Consensus 158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 234 (768)
T ss_dssp CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSC
T ss_pred CCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCc
Confidence 9999888777766 6777888888888888776554 36778888888888888877766 7888888888888888
Q ss_pred cccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCC-CCCCEEEccCCcCCCCcch
Q 017912 236 ISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSK-SYFMALDLSYNNLKGPIPG 314 (364)
Q Consensus 236 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~ 314 (364)
+++.+|..++.+++|++|++++|.+++.+|.. .+++|++|++++|++++.+|..+... ++|++|++++|.+++.+|.
T Consensus 235 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~ 312 (768)
T 3rgz_A 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312 (768)
T ss_dssp CCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG
T ss_pred CCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch
Confidence 88788888888888888888888877666544 56677777777777776666666553 6777777777777766777
Q ss_pred hcccCCCCCeEEccCCcCcccCCC--CCCCCCCCcccccCCCC
Q 017912 315 SLSSSAYIGHLDLSHNHLCGPIPV--GSPFDHLEASSFDSNDC 355 (364)
Q Consensus 315 ~l~~l~~L~~L~l~~N~l~g~ip~--~~~~~~l~~l~l~~n~~ 355 (364)
.+..+++|++|++++|+++|.+|. ...+++|+.+++++|..
T Consensus 313 ~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 777777777777777777766664 24566666666666654
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.6e-43 Score=348.24 Aligned_cols=316 Identities=23% Similarity=0.332 Sum_probs=179.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCC-------CCCCC-CCCCCCCc---cceEecCCCCceEEEEcCCCCCchhhhhcCCCC
Q 017912 21 CSPSDKAALLALKSSLNEPYLGI-------FASWT-GDNCCTNW---YGVSCDPTTRRVTDISLRGESEDPILVKAGRSG 89 (364)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~~~-------~~~W~-~~~~c~~w---~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~ 89 (364)
....|++||.+++++++++.+.. .++|. +.+||. | .||+|+.. +||++|++++ +
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~-w~~~~GV~C~~~-~~V~~L~L~~-------------~ 91 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDM-WGAQPGVSLNSN-GRVTGLSLEG-------------F 91 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGG-TTCCTTEEECTT-CCEEEEECTT-------------S
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCccc-ccCCCCeEEcCC-CCEEEEEecC-------------c
Confidence 34579999999999998765542 23798 667786 9 99999865 8999999998 5
Q ss_pred CcccccCccccCCCCCCEEecCCCC-------------------------------------------------------
Q 017912 90 YMTGSINPAICQLDTLSTLVIADWK------------------------------------------------------- 114 (364)
Q Consensus 90 ~~~~~~~~~~~~l~~L~~L~l~~~~------------------------------------------------------- 114 (364)
.+.|.+|+.++++++|++|++++++
T Consensus 92 ~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~ 171 (636)
T 4eco_A 92 GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171 (636)
T ss_dssp CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTT
T ss_pred ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcc
Confidence 5555555555555555555554310
Q ss_pred ----------------------CCcccCccccCCCCCCCEEEccCCcCCCC-----------------cCcccc--CCCC
Q 017912 115 ----------------------GISGQLPSCITSIASLRVLDLVGNKLSGK-----------------IPDDIG--NLQK 153 (364)
Q Consensus 115 ----------------------~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~ 153 (364)
.+++ +|+.++++++|++|++++|.+++. +|..++ ++++
T Consensus 172 ~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~ 250 (636)
T 4eco_A 172 QKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD 250 (636)
T ss_dssp SCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred ccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCC
Confidence 2223 445555555555555555555543 555555 5555
Q ss_pred CCEEEcccCCCCCCCchhhhcCCCCCEEEccCCc-CCC-ccCccCCCC------CccchhhcCCccccccccc--cccCC
Q 017912 154 LTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQ-LSG-KIPADFGNL------KMLSRALLRGNKLTGSIPD--SIGNM 223 (364)
Q Consensus 154 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~~~--~l~~l 223 (364)
|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..++.+ ++|++|++++|+++ .+|. .++++
T Consensus 251 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l 329 (636)
T 4eco_A 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM 329 (636)
T ss_dssp CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC
T ss_pred CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC
Confidence 5555555555555555555555555555555554 444 444444433 45555555555554 4444 44455
Q ss_pred CCCcEEEcccCcccccc----------------------chhhhCCCC-CCEEEccCCcCCcccchhhhCCC--CCCEEE
Q 017912 224 YRLADLDLSMNQISGPI----------------------PDILGKMLV-LSTLNLDSNLLSGKIPSTLLSNT--GMGILN 278 (364)
Q Consensus 224 ~~L~~L~l~~n~l~~~~----------------------~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~ 278 (364)
++|++|++++|.++|.+ |..+..+++ |++|++++|.++ .+|..+...+ +|++|+
T Consensus 330 ~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 330 KKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAID 408 (636)
T ss_dssp TTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEE
T ss_pred CCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEE
Confidence 55555555555544444 444445555 555555555555 4444443332 455555
Q ss_pred cccCCCccccCcccc-------CCCCCCEEEccCCcCCCCcch-hcccCCCCCeEEccCCcCcccCCCCC-C--------
Q 017912 279 LSRNALGGNIPDVFG-------SKSYFMALDLSYNNLKGPIPG-SLSSSAYIGHLDLSHNHLCGPIPVGS-P-------- 341 (364)
Q Consensus 279 l~~n~l~~~~~~~l~-------~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~N~l~g~ip~~~-~-------- 341 (364)
+++|++++.+|..+. .+++|++|++++|++++ +|. .+..+++|+.|++++|+++ .+|... .
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKN 486 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTT
T ss_pred CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccc
Confidence 555555555555554 45566666666666653 333 3334666666666666666 444421 1
Q ss_pred CCCCCcccccCCCCC
Q 017912 342 FDHLEASSFDSNDCL 356 (364)
Q Consensus 342 ~~~l~~l~l~~n~~~ 356 (364)
+++|+.|++++|...
T Consensus 487 l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 487 TYLLTSIDLRFNKLT 501 (636)
T ss_dssp GGGCCEEECCSSCCC
T ss_pred cCCccEEECcCCcCC
Confidence 116666666666654
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.9e-42 Score=346.89 Aligned_cols=275 Identities=37% Similarity=0.583 Sum_probs=260.8
Q ss_pred CCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCC
Q 017912 89 GYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEI 168 (364)
Q Consensus 89 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 168 (364)
+.+++.+|..++++++|++|+++ .|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls-~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLS-FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECC-SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CccccccCHHHhcCCCCCEEECc-CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC
Confidence 88899999999999999999999 48899999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhh---
Q 017912 169 PSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILG--- 245 (364)
Q Consensus 169 p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--- 245 (364)
|..+.++++|++|++++|.+++.+|..++.+++|++|++++|++++.+|..+..+++|++|++++|.++|.+|..+.
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887776543
Q ss_pred -------------------------------------------------------------------CCCCCCEEEccCC
Q 017912 246 -------------------------------------------------------------------KMLVLSTLNLDSN 258 (364)
Q Consensus 246 -------------------------------------------------------------------~l~~L~~L~l~~n 258 (364)
.+++|++|++++|
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence 2467899999999
Q ss_pred cCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCC
Q 017912 259 LLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV 338 (364)
Q Consensus 259 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~ 338 (364)
.++|.+|..++.+++|+.|++++|+++|.+|..++.+++|+.|++++|+++|.+|..+..+++|++||+++|+++|.||.
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCCC
Q 017912 339 GSPFDHLEASSFDSNDCLCGNPLRTC 364 (364)
Q Consensus 339 ~~~~~~l~~l~l~~n~~~c~~~~~~~ 364 (364)
.+++..+...++.+|+.+|+.|+++|
T Consensus 723 ~~~~~~~~~~~~~gN~~Lcg~~l~~C 748 (768)
T 3rgz_A 723 MGQFETFPPAKFLNNPGLCGYPLPRC 748 (768)
T ss_dssp SSSGGGSCGGGGCSCTEEESTTSCCC
T ss_pred chhhccCCHHHhcCCchhcCCCCcCC
Confidence 99999999999999999999999888
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-40 Score=336.72 Aligned_cols=310 Identities=26% Similarity=0.376 Sum_probs=216.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCCCCCCCCC------CCC--CCCc------------cceEecCCCCceEEEEcCCCCC
Q 017912 19 GACSPSDKAALLALKSSLNEPYLGIFASWTG------DNC--CTNW------------YGVSCDPTTRRVTDISLRGESE 78 (364)
Q Consensus 19 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~------~~~--c~~w------------~gv~c~~~~~~v~~l~l~~~~~ 78 (364)
++...+|++||++||+++.++ +|+. .++ |. | .||.|+. .++|++|+|++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C~-W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~--- 332 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK------NWRYYSGTINNTIHSLN-WNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG--- 332 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCCS-CCCSSCGGGTTCCTTEEECT-TSCEEEEECTT---
T ss_pred cccchHHHHHHHHHHHHcCCC------CCCcCCCcccccCCccc-cccccccccccCcCceEecC-CCCEEEEECcc---
Confidence 344568999999999999765 5641 244 75 9 9999986 58999999999
Q ss_pred chhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCccc---------------------------------------
Q 017912 79 DPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQ--------------------------------------- 119 (364)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--------------------------------------- 119 (364)
+.+.|.+|+.++++++|++|+++++|.+.|.
T Consensus 333 ----------~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 333 ----------FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp ----------TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred ----------CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 7788888888888888888888223433322
Q ss_pred -------------------------------------CccccCCCCCCCEEEccCCcCCC-----------------CcC
Q 017912 120 -------------------------------------LPSCITSIASLRVLDLVGNKLSG-----------------KIP 145 (364)
Q Consensus 120 -------------------------------------~p~~l~~l~~L~~L~l~~n~l~~-----------------~~~ 145 (364)
+|..++++++|++|++++|.+++ .+|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 66777778888888888888876 277
Q ss_pred cccc--CCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCc-CCC-ccCccCCCCC-------ccchhhcCCccccc
Q 017912 146 DDIG--NLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQ-LSG-KIPADFGNLK-------MLSRALLRGNKLTG 214 (364)
Q Consensus 146 ~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~l~-------~L~~L~l~~n~~~~ 214 (364)
..++ ++++|++|+|++|.+.+.+|..+.++++|++|++++|. +++ .+|..++.++ +|++|++++|+++
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~- 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE- 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence 7766 78888888888887777778777788888888888887 776 5665544443 7777777777777
Q ss_pred cccc--cccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCC-CCEEEcccCCCccccCcc
Q 017912 215 SIPD--SIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTG-MGILNLSRNALGGNIPDV 291 (364)
Q Consensus 215 ~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~ 291 (364)
.+|. .++++++|++|++++|.++ .+| .++.+++|+.|++++|.++ .+|..+..+++ |++|++++|+++ .+|..
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh
Confidence 6676 6777777777777777776 666 6667777777777777776 66666666666 777777777666 44544
Q ss_pred ccCC-------------------------------CCCCEEEccCCcCCCCcchhc-ccCCCCCeEEccCCcCcccCCCC
Q 017912 292 FGSK-------------------------------SYFMALDLSYNNLKGPIPGSL-SSSAYIGHLDLSHNHLCGPIPVG 339 (364)
Q Consensus 292 l~~~-------------------------------~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~N~l~g~ip~~ 339 (364)
+... ++|+.|++++|.++ .+|..+ ..+++|+.|++++|+++ .+|..
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 715 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPEN 715 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence 4333 24555555555555 334333 35677777777777776 45442
Q ss_pred -C--------CCCCCCcccccCCCCC
Q 017912 340 -S--------PFDHLEASSFDSNDCL 356 (364)
Q Consensus 340 -~--------~~~~l~~l~l~~n~~~ 356 (364)
. .+++|+.|++++|...
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCC
T ss_pred HhccccccccccCCccEEECCCCCCc
Confidence 1 1126777777777654
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.6e-37 Score=295.28 Aligned_cols=282 Identities=22% Similarity=0.238 Sum_probs=195.9
Q ss_pred CceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccC-ccccCCCCCCCEEEccCCcCCCCc
Q 017912 66 RRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQL-PSCITSIASLRVLDLVGNKLSGKI 144 (364)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~ 144 (364)
.+++.+++++ +.+++..|..+.++++|++|++++ +.+.+.+ +..|.++++|++|++++|.+++..
T Consensus 30 ~~l~~L~Ls~-------------n~i~~~~~~~~~~l~~L~~L~L~~-n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~ 95 (455)
T 3v47_A 30 AHVNYVDLSL-------------NSIAELNETSFSRLQDLQFLKVEQ-QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE 95 (455)
T ss_dssp TTCCEEECCS-------------SCCCEECTTTTSSCTTCCEEECCC-CSTTCEECTTTTTTCTTCCEEECTTCTTCEEC
T ss_pred CccCEEEecC-------------CccCcCChhHhccCccccEEECcC-CcccceECcccccccccCCEEeCCCCccCccC
Confidence 4688899988 555555555555555555555552 4444333 334555555555555555555444
Q ss_pred CccccCCCCCCEEEcccCCCCCCCchh--hhcCCCCCEEEccCCcCCCccCcc-CCCCCccchhhcCCcccccccccccc
Q 017912 145 PDDIGNLQKLTVLNLADNAVSGEIPSS--LVRLSSLKHLDLSNNQLSGKIPAD-FGNLKMLSRALLRGNKLTGSIPDSIG 221 (364)
Q Consensus 145 ~~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~ 221 (364)
|..+.++++|++|++++|.+++.++.. +..+++|++|++++|.+++..|.. +..+++|++|++++|++++..+..+.
T Consensus 96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 175 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh
Confidence 555555555555555555555433333 445555555555555555443433 44455555555555544433332221
Q ss_pred C-------------------------------------------------------------------------------
Q 017912 222 N------------------------------------------------------------------------------- 222 (364)
Q Consensus 222 ~------------------------------------------------------------------------------- 222 (364)
.
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 255 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC
T ss_pred ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc
Confidence 1
Q ss_pred ------------------CCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCC
Q 017912 223 ------------------MYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNAL 284 (364)
Q Consensus 223 ------------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 284 (364)
.++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+..+++|++|++++|++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 13566666777777666777788899999999999999988888899999999999999999
Q ss_pred ccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCC-CCCCCCCcccccCCCCCCCCCC
Q 017912 285 GGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVG-SPFDHLEASSFDSNDCLCGNPL 361 (364)
Q Consensus 285 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~-~~~~~l~~l~l~~n~~~c~~~~ 361 (364)
++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+.. ..+++|+.+++++|++.|+||.
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 9888889999999999999999999888899999999999999999999755543 6789999999999999999984
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.3e-36 Score=278.11 Aligned_cols=278 Identities=17% Similarity=0.189 Sum_probs=204.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCCCC----C-CCCCCCCccceEecCCCCceEEEEcCCCCCchhhhhcCCCCCcccc
Q 017912 20 ACSPSDKAALLALKSSLNEPYLGIFASW----T-GDNCCTNWYGVSCDPTTRRVTDISLRGESEDPILVKAGRSGYMTGS 94 (364)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W----~-~~~~c~~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~ 94 (364)
++..+|++||++||+++..++.+..+.| . ..++|. |.|+.|...... +
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~-~~g~~~~~~~~~-----------------------l--- 75 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIET-RTGRALKATADL-----------------------L--- 75 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCC-SHHHHHHHHHHH-----------------------H---
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccc-cCCcchhhhHHH-----------------------H---
Confidence 3556899999999998865554455678 3 456776 999999521000 0
Q ss_pred cCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhc
Q 017912 95 INPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVR 174 (364)
Q Consensus 95 ~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 174 (364)
.-.....+++|++++ +.++ .+|..+..+++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+.+
T Consensus 76 ---~~~~~~~l~~L~L~~-n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~ 148 (328)
T 4fcg_A 76 ---EDATQPGRVALELRS-VPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS 148 (328)
T ss_dssp ---HHHTSTTCCEEEEES-SCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG
T ss_pred ---hcccccceeEEEccC-CCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhc
Confidence 001123455555552 4554 55666666666777777777666 66666666777777777777766 66666667
Q ss_pred CCCCCEEEccCCcCCCccCccCC---------CCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhh
Q 017912 175 LSSLKHLDLSNNQLSGKIPADFG---------NLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILG 245 (364)
Q Consensus 175 l~~L~~L~l~~n~~~~~~~~~~~---------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 245 (364)
+++|++|++++|.+.+.+|..+. .+++|++|++++|+++ .+|..+.++++|++|++++|.+++ +|..++
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~ 226 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIH 226 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGG
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhc
Confidence 77777777777666666666554 3788888888888887 777778888888888888888874 556788
Q ss_pred CCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeE
Q 017912 246 KMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHL 325 (364)
Q Consensus 246 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 325 (364)
.+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 88888999998888888888888888889999999988888888888888899999999988888889889899999998
Q ss_pred EccCCcCc
Q 017912 326 DLSHNHLC 333 (364)
Q Consensus 326 ~l~~N~l~ 333 (364)
++..+.+.
T Consensus 307 ~l~~~~~~ 314 (328)
T 4fcg_A 307 LVPPHLQA 314 (328)
T ss_dssp ECCGGGSC
T ss_pred eCCHHHHH
Confidence 88876554
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.2e-35 Score=281.71 Aligned_cols=292 Identities=20% Similarity=0.183 Sum_probs=233.7
Q ss_pred ccceEecCC---------CCceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCC
Q 017912 56 WYGVSCDPT---------TRRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITS 126 (364)
Q Consensus 56 w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~ 126 (364)
|..|.|... ..+++.|++++ +.+++..+..+.++++|++|+++ .+.+++..|..|.+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~-------------n~l~~~~~~~~~~l~~L~~L~L~-~n~i~~~~~~~~~~ 78 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGK-------------NRIKTLNQDEFASFPHLEELELN-ENIVSAVEPGAFNN 78 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCS-------------SCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTT
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCC-------------CccceECHhHccCCCCCCEEECC-CCccCEeChhhhhC
Confidence 667888532 23577788887 78888878888889999999998 47888777888888
Q ss_pred CCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhh
Q 017912 127 IASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRAL 206 (364)
Q Consensus 127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 206 (364)
+++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 89999999999888865555678888899999998888877777888888888888888888877777788888888888
Q ss_pred cCCccccccccccccCCCCCcEEEcccCccccccchhhhCCC------------------------CCCEEEccCCcCCc
Q 017912 207 LRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKML------------------------VLSTLNLDSNLLSG 262 (364)
Q Consensus 207 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~------------------------~L~~L~l~~n~l~~ 262 (364)
+++|++++..+..+.++++|++|++++|.+.+..+..+..++ +|++|++++|.+++
T Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence 888887765555566677777777777666554444444444 55566666666664
Q ss_pred ccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCC-CC
Q 017912 263 KIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVG-SP 341 (364)
Q Consensus 263 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~-~~ 341 (364)
..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+.. ..
T Consensus 239 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 318 (477)
T 2id5_A 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318 (477)
T ss_dssp CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSC
T ss_pred cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCC
Confidence 43456788899999999999999888888999999999999999999888999999999999999999999755542 56
Q ss_pred CCCCCcccccCCCCCCCCCC
Q 017912 342 FDHLEASSFDSNDCLCGNPL 361 (364)
Q Consensus 342 ~~~l~~l~l~~n~~~c~~~~ 361 (364)
+++|+.+++.+|++.|+|++
T Consensus 319 l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 319 VGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp GGGCCEEECCSSCEECSGGG
T ss_pred CcccCEEEccCCCccCccch
Confidence 78999999999999999874
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.2e-34 Score=267.14 Aligned_cols=255 Identities=22% Similarity=0.192 Sum_probs=194.6
Q ss_pred ccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchh-hhcC
Q 017912 97 PAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSS-LVRL 175 (364)
Q Consensus 97 ~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l 175 (364)
..+..+++|++|++++ +.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|.++ .+|.. +.++
T Consensus 63 ~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l 140 (390)
T 3o6n_A 63 ALLDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNT 140 (390)
T ss_dssp HHHHHCCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred hHhcccccCcEEECCC-CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCC
Confidence 3356777777777773 6676666667777777777777777777666666777777777777777777 34433 4677
Q ss_pred CCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccC---------------------------------
Q 017912 176 SSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGN--------------------------------- 222 (364)
Q Consensus 176 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~--------------------------------- 222 (364)
++|++|++++|.+.+..+..+..+++|++|++++|++++.....+.+
T Consensus 141 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~ 220 (390)
T 3o6n_A 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 220 (390)
T ss_dssp TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEE
T ss_pred CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeec
Confidence 77777777777777666666777777777777777766432221111
Q ss_pred ----CCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCC
Q 017912 223 ----MYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYF 298 (364)
Q Consensus 223 ----l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L 298 (364)
.++|++|++++|.+++. ..++.+++|++|++++|.+++..|..+..+++|++|++++|++++ +|..+..+++|
T Consensus 221 ~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L 297 (390)
T 3o6n_A 221 RGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL 297 (390)
T ss_dssp ECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTC
T ss_pred cccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCC
Confidence 23566677777777643 467889999999999999998888899999999999999999986 45566788999
Q ss_pred CEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCCCCCCCCCcccccCCCCCCCC
Q 017912 299 MALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGN 359 (364)
Q Consensus 299 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~l~~l~l~~n~~~c~~ 359 (364)
++|++++|+++ .+|..+..+++|+.|++++|++++. | ...+++|+.+++++|++.|+|
T Consensus 298 ~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred CEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCccchh
Confidence 99999999998 5777788899999999999999854 4 468899999999999999864
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.5e-34 Score=283.20 Aligned_cols=270 Identities=23% Similarity=0.220 Sum_probs=225.1
Q ss_pred CCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCcc-ccCCCCCCEEEcccCCCCCC
Q 017912 89 GYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDD-IGNLQKLTVLNLADNAVSGE 167 (364)
Q Consensus 89 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~ 167 (364)
+.++ .+|+.+.++++|++|+++ .+.+.+..|..+..+++|++|++++|.+.+.++.. +.++++|++|++++|.+++.
T Consensus 288 n~l~-~lp~~l~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 288 THLS-ELPSGLVGLSTLKKLVLS-ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365 (606)
T ss_dssp SCCS-CCCSSCCSCTTCCEEECT-TCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred CccC-CCChhhcccccCCEEECc-cCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccc
Confidence 4444 567777777778888877 36777666777777788888888888777666554 77788888888888888754
Q ss_pred C--chhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCcccccccccc-ccCCCCCcEEEcccCccccccchhh
Q 017912 168 I--PSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDS-IGNMYRLADLDLSMNQISGPIPDIL 244 (364)
Q Consensus 168 ~--p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l 244 (364)
. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+.. +..+++|++|++++|.+++..+..+
T Consensus 366 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 445 (606)
T 3t6q_A 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445 (606)
T ss_dssp EESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT
T ss_pred cCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH
Confidence 4 566778888888888888888777788888899999999999888766543 7888999999999999988888888
Q ss_pred hCCCCCCEEEccCCcCCcc---cchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCC
Q 017912 245 GKMLVLSTLNLDSNLLSGK---IPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAY 321 (364)
Q Consensus 245 ~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 321 (364)
+.+++|++|++++|.+++. .+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++
T Consensus 446 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 525 (606)
T 3t6q_A 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525 (606)
T ss_dssp TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc
Confidence 9999999999999998863 2356888999999999999999998999999999999999999999999999999999
Q ss_pred CCeEEccCCcCcccCCCC-CCCCCCCcccccCCCCCCCCCC
Q 017912 322 IGHLDLSHNHLCGPIPVG-SPFDHLEASSFDSNDCLCGNPL 361 (364)
Q Consensus 322 L~~L~l~~N~l~g~ip~~-~~~~~l~~l~l~~n~~~c~~~~ 361 (364)
| .|++++|++++.+|.. ..+++|+.+++++||+.|+|+.
T Consensus 526 L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp C-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred c-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9 9999999999877753 5678999999999999999974
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.1e-34 Score=280.91 Aligned_cols=264 Identities=21% Similarity=0.144 Sum_probs=203.2
Q ss_pred CCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCC
Q 017912 89 GYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEI 168 (364)
Q Consensus 89 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 168 (364)
+.+....+..+.++++|++|+++ .+.+++..|..|..+++|++|++++|.+++..|..|+++++|++|++++|.+++..
T Consensus 61 ~~l~~lp~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 139 (597)
T 3oja_B 61 STMRKLPAALLDSFRQVELLNLN-DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139 (597)
T ss_dssp CEESEECTHHHHHCCCCSEEECT-TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCCcCHHHHccCCCCcEEECC-CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCC
Confidence 34444334446777788888887 36777766667777788888888888877766667777788888888888777444
Q ss_pred chhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccC--------------------------
Q 017912 169 PSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGN-------------------------- 222 (364)
Q Consensus 169 p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-------------------------- 222 (364)
+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+++.....+.+
T Consensus 140 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls 219 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred HHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeecc
Confidence 444567778888888888777766667777777777777777776432222211
Q ss_pred -----------CCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCcc
Q 017912 223 -----------MYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDV 291 (364)
Q Consensus 223 -----------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 291 (364)
.++|+.|++++|.+++. ..++.+++|++|++++|.+++..|..+..+++|++|++++|++++ +|..
T Consensus 220 ~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~ 296 (597)
T 3oja_B 220 HNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLY 296 (597)
T ss_dssp SSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECS
T ss_pred CCcccccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcc
Confidence 13466666777766653 567889999999999999998889999999999999999999996 4666
Q ss_pred ccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCCCCCCCCCcccccCCCCCCCC
Q 017912 292 FGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGN 359 (364)
Q Consensus 292 l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~l~~l~l~~n~~~c~~ 359 (364)
+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++.. ...++.|+.+++++|++.|+|
T Consensus 297 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 297 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred cccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChh
Confidence 778999999999999998 67888899999999999999998653 357899999999999998864
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.6e-35 Score=267.82 Aligned_cols=215 Identities=29% Similarity=0.469 Sum_probs=157.2
Q ss_pred CCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCC
Q 017912 89 GYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEI 168 (364)
Q Consensus 89 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 168 (364)
+.+.+.+|..++++++|++|+++ .|.+++.+|..+..+++|++|++++|.+++.+|..+.++++|++|++++|.+++.+
T Consensus 87 n~l~~~~p~~l~~l~~L~~L~Ls-~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 165 (313)
T 1ogq_A 87 NNLVGPIPPAIAKLTQLHYLYIT-HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEE-EECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred CcccccCChhHhcCCCCCEEECc-CCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC
Confidence 78899999999999999999999 58999999999999999999999999999999999999999999999999998888
Q ss_pred chhhhcCC-CCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCC
Q 017912 169 PSSLVRLS-SLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKM 247 (364)
Q Consensus 169 p~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 247 (364)
|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++..|..+..+++|++|++++|.+++..+.
T Consensus 166 p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----- 239 (313)
T 1ogq_A 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK----- 239 (313)
T ss_dssp CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-----
T ss_pred CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-----
Confidence 98888887 888888888888777776666654 66666666665555555555555555555555555433332
Q ss_pred CCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEc
Q 017912 248 LVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDL 327 (364)
Q Consensus 248 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 327 (364)
+..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|.. ..+++|+.+++
T Consensus 240 --------------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l 298 (313)
T 1ogq_A 240 --------------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298 (313)
T ss_dssp --------------------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGT
T ss_pred --------------------ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHh
Confidence 344455555555555555555555555555555555555555555543 45555666666
Q ss_pred cCCc
Q 017912 328 SHNH 331 (364)
Q Consensus 328 ~~N~ 331 (364)
++|+
T Consensus 299 ~~N~ 302 (313)
T 1ogq_A 299 ANNK 302 (313)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 6665
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-32 Score=271.11 Aligned_cols=143 Identities=20% Similarity=0.196 Sum_probs=111.5
Q ss_pred cccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCc-ccchhhhCCCCCCEEEcccCCCccccCccccCCCC
Q 017912 219 SIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSG-KIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSY 297 (364)
Q Consensus 219 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 297 (364)
.+.++++|++|++++|.+++..|..++.+++|++|++++|.+++ .+|..+..+++|++|++++|++++..|..+..+++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 34445555555555565555566666677777777777777775 35677778888888888888888888888888999
Q ss_pred CCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCCCCCC-CCCcccccCCCCCCCCCC
Q 017912 298 FMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFD-HLEASSFDSNDCLCGNPL 361 (364)
Q Consensus 298 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~-~l~~l~l~~n~~~c~~~~ 361 (364)
|++|++++|++++..|..+..+++|+.|++++|+++...+....++ +|+.+++++||+.|+|++
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999999998888889999999999999999884333345565 599999999999999986
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.7e-32 Score=271.99 Aligned_cols=118 Identities=22% Similarity=0.251 Sum_probs=100.7
Q ss_pred hhCCCCCCEEEccCCcCC-cccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCC
Q 017912 244 LGKMLVLSTLNLDSNLLS-GKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYI 322 (364)
Q Consensus 244 l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 322 (364)
+..+++++.|++++|.+. +..|..+..+++|++|++++|++++..|..+.++++|++|+|++|++++..+..+..+++|
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence 344456666777776533 3456778888999999999999999999999999999999999999998888899999999
Q ss_pred CeEEccCCcCcccCCCC-CCC-CCCCcccccCCCCCCCCCC
Q 017912 323 GHLDLSHNHLCGPIPVG-SPF-DHLEASSFDSNDCLCGNPL 361 (364)
Q Consensus 323 ~~L~l~~N~l~g~ip~~-~~~-~~l~~l~l~~n~~~c~~~~ 361 (364)
++||+++|++++..|.. ..+ .+|+.+++++||+.|+|.+
T Consensus 545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 99999999999988864 344 5899999999999999975
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=266.54 Aligned_cols=161 Identities=23% Similarity=0.289 Sum_probs=119.2
Q ss_pred CCCCccchhhcCCccccccccccccCCCCCcEEEcccCcccc--ccchhhhCCCCCCEEEccCCcCCcccchh-hhCCCC
Q 017912 197 GNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISG--PIPDILGKMLVLSTLNLDSNLLSGKIPST-LLSNTG 273 (364)
Q Consensus 197 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~ 273 (364)
..+++|++|++++|++++..|..+.++++|++|++++|.+++ .+|..++.+++|++|++++|.+++.+|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 345566666666666666666666666777777777777664 44556667777777777777776545443 556677
Q ss_pred CCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCC--CCCCCCCCccccc
Q 017912 274 MGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV--GSPFDHLEASSFD 351 (364)
Q Consensus 274 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~--~~~~~~l~~l~l~ 351 (364)
|++|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++++ +|. ...+++|+.++++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECc
Confidence 77777777777666655543 68899999999988 788888899999999999999994 554 4678899999999
Q ss_pred CCCCCCCCCC
Q 017912 352 SNDCLCGNPL 361 (364)
Q Consensus 352 ~n~~~c~~~~ 361 (364)
+|++.|+|++
T Consensus 477 ~N~~~c~c~~ 486 (520)
T 2z7x_B 477 TNPWDCSCPR 486 (520)
T ss_dssp SSCBCCCHHH
T ss_pred CCCCcccCCc
Confidence 9999999874
No 16
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.8e-32 Score=265.63 Aligned_cols=157 Identities=23% Similarity=0.261 Sum_probs=93.5
Q ss_pred ccchhhcCCccccccccccccCCCCCcEEEcccCcccc--ccchhhhCCCCCCEEEccCCcCCcccch-hhhCCCCCCEE
Q 017912 201 MLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISG--PIPDILGKMLVLSTLNLDSNLLSGKIPS-TLLSNTGMGIL 277 (364)
Q Consensus 201 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L 277 (364)
+|++|++++|++++..|..+.++++|++|++++|.+++ .+|..++.+++|++|++++|.+++.+|. .+..+++|++|
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L 433 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence 33444444444443334444444444444444444433 1223344444444444444444432322 23344445555
Q ss_pred EcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCC--CCCCCCCCcccccCCCC
Q 017912 278 NLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV--GSPFDHLEASSFDSNDC 355 (364)
Q Consensus 278 ~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~--~~~~~~l~~l~l~~n~~ 355 (364)
++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|++++ +|. ...+++|+.+++++|++
T Consensus 434 ~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp ECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCB
T ss_pred ECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCc
Confidence 5555554444433332 57888888888887 677777799999999999999994 554 56788999999999999
Q ss_pred CCCCCC
Q 017912 356 LCGNPL 361 (364)
Q Consensus 356 ~c~~~~ 361 (364)
.|+|++
T Consensus 510 ~c~c~~ 515 (562)
T 3a79_B 510 DCTCPG 515 (562)
T ss_dssp CCCHHH
T ss_pred CCCcch
Confidence 999874
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.4e-32 Score=257.90 Aligned_cols=260 Identities=20% Similarity=0.208 Sum_probs=192.8
Q ss_pred CceEEEEcCCCCCchhhhhcCCCCCcccccC-ccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCc
Q 017912 66 RRVTDISLRGESEDPILVKAGRSGYMTGSIN-PAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKI 144 (364)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 144 (364)
.+++.+++++ +.+.+.++ ..+.++++|++|+++ .|.+++..|..+.++++|++|++++|.+++.+
T Consensus 54 ~~L~~L~L~~-------------n~~~~~i~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 119 (455)
T 3v47_A 54 QDLQFLKVEQ-------------QTPGLVIRNNTFRGLSSLIILKLD-YNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119 (455)
T ss_dssp TTCCEEECCC-------------CSTTCEECTTTTTTCTTCCEEECT-TCTTCEECTTTTTTCTTCCEEECTTSCCBTHH
T ss_pred ccccEEECcC-------------CcccceECcccccccccCCEEeCC-CCccCccChhhccCcccCCEEeCCCCCCCccc
Confidence 3566777776 44544442 345666666666666 35555555656666666666666666665533
Q ss_pred Ccc--ccCCCCCCEEEcccCCCCCCCchh-hhcCCCCCEEEccCCcCCCccCccCCCC----------------------
Q 017912 145 PDD--IGNLQKLTVLNLADNAVSGEIPSS-LVRLSSLKHLDLSNNQLSGKIPADFGNL---------------------- 199 (364)
Q Consensus 145 ~~~--~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~l---------------------- 199 (364)
+.. +.++++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+..+..+
T Consensus 120 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~ 199 (455)
T 3v47_A 120 LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199 (455)
T ss_dssp HHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTC
T ss_pred cCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhh
Confidence 333 555666666666666666544444 4556666666666665554433332221
Q ss_pred ---------------------------------------------------------------------------Cccch
Q 017912 200 ---------------------------------------------------------------------------KMLSR 204 (364)
Q Consensus 200 ---------------------------------------------------------------------------~~L~~ 204 (364)
++|++
T Consensus 200 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 279 (455)
T 3v47_A 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279 (455)
T ss_dssp TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCE
T ss_pred ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceE
Confidence 34555
Q ss_pred hhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCC
Q 017912 205 ALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNAL 284 (364)
Q Consensus 205 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 284 (364)
|++++|.+++..|..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 359 (455)
T 3v47_A 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC
T ss_pred EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc
Confidence 56666666666677889999999999999999988888999999999999999999988888999999999999999999
Q ss_pred ccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCC
Q 017912 285 GGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVG 339 (364)
Q Consensus 285 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~ 339 (364)
++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..
T Consensus 360 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 9998999999999999999999999776777889999999999999999998854
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.9e-33 Score=274.70 Aligned_cols=264 Identities=19% Similarity=0.278 Sum_probs=205.3
Q ss_pred CCCcccccCccccCCCCCCEEecCCCCCCccc-----------------CccccC--CCCCCCEEEccCCcCCCCcCccc
Q 017912 88 SGYMTGSINPAICQLDTLSTLVIADWKGISGQ-----------------LPSCIT--SIASLRVLDLVGNKLSGKIPDDI 148 (364)
Q Consensus 88 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-----------------~p~~l~--~l~~L~~L~l~~n~l~~~~~~~~ 148 (364)
.+.++| +|+.++++++|++|+++ .|.+++. +|+.++ ++++|++|++++|.+.+.+|..+
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls-~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMG-NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEE-SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECc-CCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence 356777 88888888888888888 4778875 888888 88888888888888888888888
Q ss_pred cCCCCCCEEEcccCC-CCC-CCchhhhcC------CCCCEEEccCCcCCCccCc--cCCCCCccchhhcCCccccc----
Q 017912 149 GNLQKLTVLNLADNA-VSG-EIPSSLVRL------SSLKHLDLSNNQLSGKIPA--DFGNLKMLSRALLRGNKLTG---- 214 (364)
Q Consensus 149 ~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~---- 214 (364)
+++++|++|++++|+ +++ .+|..++++ ++|++|++++|.++ .+|. .++.+++|++|++++|+++|
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~ 348 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPA 348 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCC
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhh
Confidence 888888888888887 776 666666554 56666666666665 5555 55555555555555555543
Q ss_pred ------------------cccccccCCCC-CcEEEcccCccccccchhhhCCC--CCCEEEccCCcCCcccchhhh----
Q 017912 215 ------------------SIPDSIGNMYR-LADLDLSMNQISGPIPDILGKML--VLSTLNLDSNLLSGKIPSTLL---- 269 (364)
Q Consensus 215 ------------------~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~---- 269 (364)
.+|..+.++++ |++|++++|.++ .+|..+...+ +|++|++++|.+++.+|..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 44555667777 999999999988 7787776655 899999999999998888887
Q ss_pred ---CCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhccc-CC-------CCCeEEccCCcCcccCCC
Q 017912 270 ---SNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSS-SA-------YIGHLDLSHNHLCGPIPV 338 (364)
Q Consensus 270 ---~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~-l~-------~L~~L~l~~N~l~g~ip~ 338 (364)
.+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..... .. +|+.|++++|+++ .+|.
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG
T ss_pred ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccCh
Confidence 7789999999999999555555677999999999999999 66654433 22 9999999999999 6665
Q ss_pred C-C--CCCCCCcccccCCCCCC
Q 017912 339 G-S--PFDHLEASSFDSNDCLC 357 (364)
Q Consensus 339 ~-~--~~~~l~~l~l~~n~~~c 357 (364)
. . .+++|+.|++++|....
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS
T ss_pred hhhhccCCCcCEEECCCCCCCC
Confidence 3 3 78999999999998764
No 19
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=251.89 Aligned_cols=256 Identities=19% Similarity=0.182 Sum_probs=204.9
Q ss_pred CCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEE
Q 017912 103 DTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLD 182 (364)
Q Consensus 103 ~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 182 (364)
++|++|+++ .+.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|+
T Consensus 52 ~~L~~L~l~-~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLS-NNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECC-CCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 478999998 4778776666788899999999999999877777888999999999999999854444578889999999
Q ss_pred ccCCcCCCccC-ccCCCCCccchhhcCCcc-ccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcC
Q 017912 183 LSNNQLSGKIP-ADFGNLKMLSRALLRGNK-LTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLL 260 (364)
Q Consensus 183 l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 260 (364)
+++|.++...+ ..+..+++|++|++++|. +....+..+.++++|++|++++|.+++..|..++.+++|++|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 99998884333 368889999999999884 6655567788889999999999999888888888899999999999988
Q ss_pred CcccchhhhCCCCCCEEEcccCCCccccCccc---cCCCCCCEEEccCCcCCC----CcchhcccCCCCCeEEccCCcCc
Q 017912 261 SGKIPSTLLSNTGMGILNLSRNALGGNIPDVF---GSKSYFMALDLSYNNLKG----PIPGSLSSSAYIGHLDLSHNHLC 333 (364)
Q Consensus 261 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l---~~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~N~l~ 333 (364)
+......+..+++|++|++++|++++..+..+ .....++.++++++.+++ .+|..+..+++|+.|++++|+++
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 74333344567889999999999887654433 345678888888888876 46777888999999999999988
Q ss_pred ccCCCC--CCCCCCCcccccCCCCCCCCC
Q 017912 334 GPIPVG--SPFDHLEASSFDSNDCLCGNP 360 (364)
Q Consensus 334 g~ip~~--~~~~~l~~l~l~~n~~~c~~~ 360 (364)
.+|.. ..+++|+.+++++|++.|+|+
T Consensus 291 -~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 291 -SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 45542 578889999999999999886
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.6e-32 Score=262.98 Aligned_cols=286 Identities=21% Similarity=0.237 Sum_probs=205.1
Q ss_pred CCCccceEecCC-----------CCceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCc
Q 017912 53 CTNWYGVSCDPT-----------TRRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLP 121 (364)
Q Consensus 53 c~~w~gv~c~~~-----------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p 121 (364)
|. |.|+ |+.. ..+++.+++++ +.+++..|..+.++++|++|+++ .|.+++..|
T Consensus 4 C~-~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~-------------n~l~~~~~~~~~~l~~L~~L~Ls-~n~i~~~~~ 67 (549)
T 2z81_A 4 CD-ASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF-------------NKITYIGHGDLRACANLQVLILK-SSRINTIEG 67 (549)
T ss_dssp EC-TTSE-EECTTSCCSSCCSCCCTTCCEEECCS-------------SCCCEECSSTTSSCTTCCEEECT-TSCCCEECT
T ss_pred CC-CCce-EECCCCccccccccCCCCccEEECcC-------------CccCccChhhhhcCCcccEEECC-CCCcCccCh
Confidence 65 8887 7532 13678888887 88888888899999999999999 488888888
Q ss_pred cccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCC-CCchhhhcCCCCCEEEccCCcCCCccC-ccCCCC
Q 017912 122 SCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSG-EIPSSLVRLSSLKHLDLSNNQLSGKIP-ADFGNL 199 (364)
Q Consensus 122 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l 199 (364)
..|..+++|++|++++|.+++..+..++++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.++ ..+..+
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 147 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence 889999999999999999997777779999999999999999985 356778899999999999998555555 578899
Q ss_pred CccchhhcCCccccccccccccCCC------------------------CCcEEEcccCcccccc--c------------
Q 017912 200 KMLSRALLRGNKLTGSIPDSIGNMY------------------------RLADLDLSMNQISGPI--P------------ 241 (364)
Q Consensus 200 ~~L~~L~l~~n~~~~~~~~~l~~l~------------------------~L~~L~l~~n~l~~~~--~------------ 241 (364)
++|++|++++|++++..|..+.+++ +|++|++++|.+++.. +
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 9999999999999887777766554 4555555555444310 0
Q ss_pred -----------------hhhh-----------------------------------------------------------
Q 017912 242 -----------------DILG----------------------------------------------------------- 245 (364)
Q Consensus 242 -----------------~~l~----------------------------------------------------------- 245 (364)
..+.
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence 0000
Q ss_pred CCCCCCEEEccCCcCCcccchhh-hCCCCCCEEEcccCCCccccC---ccccCCCCCCEEEccCCcCCCCcc--hhcccC
Q 017912 246 KMLVLSTLNLDSNLLSGKIPSTL-LSNTGMGILNLSRNALGGNIP---DVFGSKSYFMALDLSYNNLKGPIP--GSLSSS 319 (364)
Q Consensus 246 ~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~l~~n~l~~~~~--~~l~~l 319 (364)
...+|++|++++|.++ .+|..+ ..+++|++|++++|++++.+| ..++.+++|++|++++|++++..+ ..+..+
T Consensus 308 ~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l 386 (549)
T 2z81_A 308 LLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386 (549)
T ss_dssp HSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC
T ss_pred hcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC
Confidence 0112333333333333 234333 357788888888888877653 236677888888888888875322 457778
Q ss_pred CCCCeEEccCCcCcccCCCCCCCCCCCcccccCCCC
Q 017912 320 AYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDC 355 (364)
Q Consensus 320 ~~L~~L~l~~N~l~g~ip~~~~~~~l~~l~l~~n~~ 355 (364)
++|++|++++|++++..+....+++|+.|++++|..
T Consensus 387 ~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 387 KNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp TTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCC
T ss_pred CCCCEEECCCCCCccCChhhcccccccEEECCCCCc
Confidence 888888888888874333334566777777777764
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=2.8e-31 Score=262.41 Aligned_cols=275 Identities=23% Similarity=0.251 Sum_probs=245.6
Q ss_pred ceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCc
Q 017912 67 RVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPD 146 (364)
Q Consensus 67 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~ 146 (364)
.++.+++++ +.+++..+..+..+++|++|++++ +.++ .+|..+..+++|++|++++|.+.+..|.
T Consensus 255 ~L~~L~l~~-------------n~l~~~~~~~~~~l~~L~~L~l~~-n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 255 SVESINLQK-------------HYFFNISSNTFHCFSGLQELDLTA-THLS-ELPSGLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp EEEEEECTT-------------CCCSSCCTTTTTTCTTCSEEECTT-SCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred ceeEEEeec-------------CccCccCHHHhccccCCCEEeccC-CccC-CCChhhcccccCCEEECccCCcCcCchh
Confidence 577788877 888888888899999999999994 7777 7888999999999999999999987788
Q ss_pred cccCCCCCCEEEcccCCCCCCCchh-hhcCCCCCEEEccCCcCCCcc--CccCCCCCccchhhcCCccccccccccccCC
Q 017912 147 DIGNLQKLTVLNLADNAVSGEIPSS-LVRLSSLKHLDLSNNQLSGKI--PADFGNLKMLSRALLRGNKLTGSIPDSIGNM 223 (364)
Q Consensus 147 ~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 223 (364)
.+.++++|++|++++|.+.+.++.. +..+++|++|++++|.+.+.. +..+..+++|++|++++|++.+..|..+.++
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 399 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence 9999999999999999998777654 889999999999999998665 7789999999999999999998888999999
Q ss_pred CCCcEEEcccCccccccch-hhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccc---cCccccCCCCCC
Q 017912 224 YRLADLDLSMNQISGPIPD-ILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGN---IPDVFGSKSYFM 299 (364)
Q Consensus 224 ~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~l~~~~~L~ 299 (364)
++|++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++. .+..+..+++|+
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence 9999999999999877654 488999999999999999988888899999999999999999873 235688999999
Q ss_pred EEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCC-CCCCCCCCcccccCCCCCC
Q 017912 300 ALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV-GSPFDHLEASSFDSNDCLC 357 (364)
Q Consensus 300 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~-~~~~~~l~~l~l~~n~~~c 357 (364)
+|++++|++++..|..+..+++|+.|++++|++++..|. ...++.| .+++++|...-
T Consensus 480 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred EEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence 999999999988889999999999999999999988775 3567777 89999998753
No 22
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.1e-30 Score=239.03 Aligned_cols=277 Identities=21% Similarity=0.243 Sum_probs=177.0
Q ss_pred ccceEecCC---------CCceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCC
Q 017912 56 WYGVSCDPT---------TRRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITS 126 (364)
Q Consensus 56 w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~ 126 (364)
|..+.|... ...++.+++++ +.+++..+..+.++++|++|+++ .+.+++..|..+..
T Consensus 33 l~~l~~~~~~l~~lp~~~~~~l~~L~L~~-------------n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~ 98 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLPPDTALLDLQN-------------NKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAP 98 (330)
T ss_dssp TTEEECTTSCCCSCCCSCCTTCCEEECCS-------------SCCCCBCTTTTTTCTTCCEEECC-SSCCCCBCTTTTTT
T ss_pred CeEEEecCCCccccCccCCCCCeEEECCC-------------CcCCEeChhhhccCCCCCEEECC-CCcCCeeCHHHhcC
Confidence 777777532 12455556655 66666655567777777777777 36666666666777
Q ss_pred CCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCC--ccCccCCCCCccch
Q 017912 127 IASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSG--KIPADFGNLKMLSR 204 (364)
Q Consensus 127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~ 204 (364)
+++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|++
T Consensus 99 l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 99 LVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp CTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred CCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 777777777777766 4554443 667777777777775555566677777777777776642 44556667777777
Q ss_pred hhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCC
Q 017912 205 ALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNAL 284 (364)
Q Consensus 205 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 284 (364)
|++++|+++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 176 L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 176 IRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp EECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred EECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 777777766 3444333 5677777777777666666677777777777777777665555666677777777777777
Q ss_pred ccccCccccCCCCCCEEEccCCcCCCCcchhccc------CCCCCeEEccCCcCcc-cCC--CCCCCCCCCcccccCC
Q 017912 285 GGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSS------SAYIGHLDLSHNHLCG-PIP--VGSPFDHLEASSFDSN 353 (364)
Q Consensus 285 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~N~l~g-~ip--~~~~~~~l~~l~l~~n 353 (364)
+ .+|..+..+++|++|++++|.+++..+..++. .+.++.+++++|++.. .++ ....+..++.+++++|
T Consensus 253 ~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 253 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp S-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred c-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 6 55666667777777777777776554444432 2566677777776642 222 1234556666666665
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=3.2e-31 Score=265.43 Aligned_cols=272 Identities=25% Similarity=0.252 Sum_probs=219.4
Q ss_pred CCcccccCccccCCCCCCEEecCCCCCCccc-Cc-cccCC--CCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCC
Q 017912 89 GYMTGSINPAICQLDTLSTLVIADWKGISGQ-LP-SCITS--IASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAV 164 (364)
Q Consensus 89 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~p-~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 164 (364)
+.+++..+..+..+++|++|++++ +.+... ++ ..+.. .+.|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 339 n~l~~~~~~~~~~l~~L~~L~Ls~-n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 417 (680)
T 1ziw_A 339 NDIPGIKSNMFTGLINLKYLSLSN-SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417 (680)
T ss_dssp CCBCCCCTTTTTTCTTCCEEECTT-CBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CccCCCChhHhccccCCcEEECCC-CchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcC
Confidence 556666666666777777777763 433221 11 11222 24677777777888777777888889999999999988
Q ss_pred CCCCc-hhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCcccc--ccccccccCCCCCcEEEcccCccccccc
Q 017912 165 SGEIP-SSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLT--GSIPDSIGNMYRLADLDLSMNQISGPIP 241 (364)
Q Consensus 165 ~~~~p-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 241 (364)
.+.+| ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|.+++..+
T Consensus 418 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~ 497 (680)
T 1ziw_A 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND 497 (680)
T ss_dssp EEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCCh
Confidence 76665 57778889999999999888777788888999999999998876 5678889999999999999999998878
Q ss_pred hhhhCCCCCCEEEccCCcCCcccc--------hhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcc
Q 017912 242 DILGKMLVLSTLNLDSNLLSGKIP--------STLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIP 313 (364)
Q Consensus 242 ~~l~~l~~L~~L~l~~n~l~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 313 (364)
..++.+++|++|++++|.+++..+ ..+..+++|++|++++|+++...+..+..+++|+.|++++|++++..+
T Consensus 498 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 577 (680)
T 1ziw_A 498 DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred hhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCH
Confidence 889999999999999999985321 236788999999999999996666678999999999999999997666
Q ss_pred hhcccCCCCCeEEccCCcCcccCCCC-C-CCCCCCcccccCCCCCCCCCC
Q 017912 314 GSLSSSAYIGHLDLSHNHLCGPIPVG-S-PFDHLEASSFDSNDCLCGNPL 361 (364)
Q Consensus 314 ~~l~~l~~L~~L~l~~N~l~g~ip~~-~-~~~~l~~l~l~~n~~~c~~~~ 361 (364)
..+..+++|+.|++++|++++..|.. . .+++|+.+++++||+.|+|++
T Consensus 578 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred hHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 77889999999999999999876642 2 578999999999999999985
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.1e-30 Score=239.16 Aligned_cols=279 Identities=22% Similarity=0.256 Sum_probs=200.0
Q ss_pred CCCccceEecCC---------CCceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccc
Q 017912 53 CTNWYGVSCDPT---------TRRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSC 123 (364)
Q Consensus 53 c~~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~ 123 (364)
|. |..+.|... ..+++.+++++ +.+++..+..+.++++|++|+++ .+.+++..|..
T Consensus 33 c~-l~~l~~~~~~l~~ip~~~~~~l~~L~l~~-------------n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~ 97 (332)
T 2ft3_A 33 CH-LRVVQCSDLGLKAVPKEISPDTTLLDLQN-------------NDISELRKDDFKGLQHLYALVLV-NNKISKIHEKA 97 (332)
T ss_dssp EE-TTEEECCSSCCSSCCSCCCTTCCEEECCS-------------SCCCEECTTTTTTCTTCCEEECC-SSCCCEECGGG
T ss_pred cc-CCEEECCCCCccccCCCCCCCCeEEECCC-------------CcCCccCHhHhhCCCCCcEEECC-CCccCccCHhH
Confidence 44 888888532 12466666666 67777667778888888888887 47777777777
Q ss_pred cCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCC--CccCccCCCCCc
Q 017912 124 ITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLS--GKIPADFGNLKM 201 (364)
Q Consensus 124 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~ 201 (364)
+.++++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++ +..+..+..+ +
T Consensus 98 ~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173 (332)
T ss_dssp STTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred hhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence 888888888888888887 5555554 77888888888887555556777888888888888775 2556666666 7
Q ss_pred cchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccc
Q 017912 202 LSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSR 281 (364)
Q Consensus 202 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 281 (364)
|++|++++|++++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 174 L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 174 LNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250 (332)
T ss_dssp CSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred cCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence 8888888888774 555443 5788888888888777767777888888888888888766666777788888888888
Q ss_pred CCCccccCccccCCCCCCEEEccCCcCCCCcchhccc------CCCCCeEEccCCcCc--ccCCC-CCCCCCCCcccccC
Q 017912 282 NALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSS------SAYIGHLDLSHNHLC--GPIPV-GSPFDHLEASSFDS 352 (364)
Q Consensus 282 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~N~l~--g~ip~-~~~~~~l~~l~l~~ 352 (364)
|+++ .+|..+..+++|++|++++|++++..+..+.. .++|+.|++++|++. +..|. ...++.|+.+++++
T Consensus 251 N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 251 NKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp SCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred CcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence 8887 66667777888888888888887655555543 356778888888775 22322 24567777787777
Q ss_pred CC
Q 017912 353 ND 354 (364)
Q Consensus 353 n~ 354 (364)
|.
T Consensus 330 n~ 331 (332)
T 2ft3_A 330 YK 331 (332)
T ss_dssp --
T ss_pred cc
Confidence 75
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=5.5e-31 Score=258.30 Aligned_cols=143 Identities=17% Similarity=0.210 Sum_probs=116.9
Q ss_pred ccCCCCCcEEEcccCccccccc-hhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCc-cccCccccCCCC
Q 017912 220 IGNMYRLADLDLSMNQISGPIP-DILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALG-GNIPDVFGSKSY 297 (364)
Q Consensus 220 l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~~~~ 297 (364)
+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|+++ +.+|..+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 3344455555555555544433 35667788888888888888777788888899999999999987 578888999999
Q ss_pred CCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCC-CCCCCCCCcccccCCCCCCCCCCC
Q 017912 298 FMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV-GSPFDHLEASSFDSNDCLCGNPLR 362 (364)
Q Consensus 298 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~-~~~~~~l~~l~l~~n~~~c~~~~~ 362 (364)
|++|++++|++++..|..+..+++|++|++++|++++..|. ...+++|+.+++++|++.|+||..
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 99999999999988899999999999999999999987775 367899999999999999999864
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=2.9e-31 Score=255.00 Aligned_cols=262 Identities=19% Similarity=0.150 Sum_probs=179.9
Q ss_pred cccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCC
Q 017912 98 AICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSS 177 (364)
Q Consensus 98 ~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 177 (364)
.+.++++|++|+++ .|.+.+..+..+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++
T Consensus 99 ~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 99 VFTGLSNLTKLDIS-ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp SSTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred cccCCCCCCEEECC-CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 34444455555554 24444444444455555555555555555444445555555555555555555433344555555
Q ss_pred CCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccC
Q 017912 178 LKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDS 257 (364)
Q Consensus 178 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 257 (364)
|++|++++|.+.+..+..+..+++|++|++++|...+.++.......+|++|++++|.++...+..+..+++|++|++++
T Consensus 178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence 55555555555544445566666666666666666555555555556788888888888865557889999999999999
Q ss_pred CcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCC
Q 017912 258 NLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIP 337 (364)
Q Consensus 258 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip 337 (364)
|.+++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++...-+
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 99997777788999999999999999999999999999999999999999998777788899999999999999875443
Q ss_pred CCCCCCCCCcccccCCCCCCCCC
Q 017912 338 VGSPFDHLEASSFDSNDCLCGNP 360 (364)
Q Consensus 338 ~~~~~~~l~~l~l~~n~~~c~~~ 360 (364)
....+.....+.+.++...|..|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 338 LLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp GHHHHTTTTSSCCTTCCCBEEES
T ss_pred hHhHHhhhhccccCccCceeCCc
Confidence 22222233345556666666544
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=9.8e-31 Score=258.52 Aligned_cols=125 Identities=25% Similarity=0.274 Sum_probs=88.2
Q ss_pred CceEEEEcCCCCCch----hhhh------cC-CCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEE
Q 017912 66 RRVTDISLRGESEDP----ILVK------AG-RSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLD 134 (364)
Q Consensus 66 ~~v~~l~l~~~~~~~----~~~~------~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~ 134 (364)
.+++.+++++..... .+.. +. +.+.+++..|..+.++++|++|+++ .|.+++..|..|.++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls-~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT-GNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC-CCcccccChhhcCCcccCCEEE
Confidence 467888888742110 1111 11 2356666667777788888888887 3677776777788888888888
Q ss_pred ccCCcCCCCcCccccCCCCCCEEEcccCCCCC-CCchhhhcCCCCCEEEccCCcCCCc
Q 017912 135 LVGNKLSGKIPDDIGNLQKLTVLNLADNAVSG-EIPSSLVRLSSLKHLDLSNNQLSGK 191 (364)
Q Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~ 191 (364)
+++|.+++..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++.
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 88888876666677888888888888888775 5678888888888888888876543
No 28
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=247.44 Aligned_cols=232 Identities=22% Similarity=0.244 Sum_probs=159.8
Q ss_pred CCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhc
Q 017912 128 ASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALL 207 (364)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 207 (364)
+++++|++++|.+++..+..|.++++|++|+|++|.+++..+..+.++++|++|++++|.++...+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45666666666666555556666666666666666666544555666666666666666666444445666666666666
Q ss_pred CCccccccccccccCCCCCcEEEcccCcccccc-chhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCcc
Q 017912 208 RGNKLTGSIPDSIGNMYRLADLDLSMNQISGPI-PDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGG 286 (364)
Q Consensus 208 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 286 (364)
++|+++...+..+.++++|++|++++|...+.+ +..+..+++|++|++++|.++ .+| .+..+++|++|++++|++++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 666666544556666677777777764333233 335667777777777777776 444 35677788888888888887
Q ss_pred ccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCC-CCCCCCCcccccCCCCCCCCCC
Q 017912 287 NIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVG-SPFDHLEASSFDSNDCLCGNPL 361 (364)
Q Consensus 287 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~-~~~~~l~~l~l~~n~~~c~~~~ 361 (364)
..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+.. ..+++|+.+++.+||+.|+|.+
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 77778888888888888888888777777888888888888888887655543 4677888888888888888865
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=6.1e-31 Score=238.17 Aligned_cols=230 Identities=20% Similarity=0.234 Sum_probs=109.5
Q ss_pred CCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCC--cCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCE
Q 017912 103 DTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGK--IPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKH 180 (364)
Q Consensus 103 ~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 180 (364)
+++++|++++ +.++...+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus 28 ~~l~~L~L~~-n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred CCCCEEECCC-CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence 3455555552 444422222345555555555555555411 1334444555555555555554 34444445555555
Q ss_pred EEccCCcCCCccC-ccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCcccc-ccchhhhCCCCCCEEEccCC
Q 017912 181 LDLSNNQLSGKIP-ADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISG-PIPDILGKMLVLSTLNLDSN 258 (364)
Q Consensus 181 L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n 258 (364)
|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 5555555443222 234445555555555555544444444445555555555554443 23444444455555555555
Q ss_pred cCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCC-CCCeEEccCCcCcc
Q 017912 259 LLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSA-YIGHLDLSHNHLCG 334 (364)
Q Consensus 259 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~N~l~g 334 (364)
.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..++ +|++|++++|++++
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 55444444444445555555555555444444444445555555555555444444444442 45555555554443
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.4e-30 Score=248.45 Aligned_cols=232 Identities=22% Similarity=0.241 Sum_probs=151.1
Q ss_pred CCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhc
Q 017912 128 ASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALL 207 (364)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 207 (364)
+++++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.++...+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 35555555555555544555555555666666555555444455555556666666666555444444555666666666
Q ss_pred CCccccccccccccCCCCCcEEEcccCc-cccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCcc
Q 017912 208 RGNKLTGSIPDSIGNMYRLADLDLSMNQ-ISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGG 286 (364)
Q Consensus 208 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 286 (364)
++|+++...+..+.++++|++|++++|. +....+..+..+++|++|++++|.+++ +| .+..+++|++|++++|++++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence 6666554444455666666666666633 332223356667777777777777763 33 35667778888888888877
Q ss_pred ccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCC-CCCCCCCcccccCCCCCCCCCC
Q 017912 287 NIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVG-SPFDHLEASSFDSNDCLCGNPL 361 (364)
Q Consensus 287 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~-~~~~~l~~l~l~~n~~~c~~~~ 361 (364)
..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+.. ..+++|+.+++.+||+.|+|.+
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 77777778888888888888887777777777888888888888877555442 4577788888888888888875
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=5e-31 Score=269.86 Aligned_cols=286 Identities=20% Similarity=0.219 Sum_probs=198.9
Q ss_pred ccceEecCCCCceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccC-ccccCCCCCCCEEE
Q 017912 56 WYGVSCDPTTRRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQL-PSCITSIASLRVLD 134 (364)
Q Consensus 56 w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-p~~l~~l~~L~~L~ 134 (364)
|..|.+ ...+++.|++++ |.+++..+..+.++++|++|++++ +...+.+ |..|.++++|++|+
T Consensus 16 L~~vP~--lp~~l~~LdLs~-------------N~i~~i~~~~~~~l~~L~~LdLs~-n~~~~~i~~~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 16 LTQVPQ--VLNTTERLLLSF-------------NYIRTVTASSFPFLEQLQLLELGS-QYTPLTIDKEAFRNLPNLRILD 79 (844)
T ss_dssp SSCCCS--SCTTCCEEEEES-------------CCCCEECSSSCSSCCSCSEEEECT-TCCCCEECTTTTSSCTTCCEEE
T ss_pred CCCCCC--CCCCcCEEECCC-------------CcCCccChhHCcccccCeEEeCCC-CCCccccCHHHhcCCCCCCEEE
Confidence 666666 345788999988 666666666666777777777763 4334444 55666666677777
Q ss_pred ccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchh--hhcCCCCCEEEccCCcCCCccC-ccCCCCCccchhhcCCcc
Q 017912 135 LVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSS--LVRLSSLKHLDLSNNQLSGKIP-ADFGNLKMLSRALLRGNK 211 (364)
Q Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~ 211 (364)
+++|.+++..|..|.++++|++|++++|.+++.+|.. +.++++|++|++++|.+++..+ ..++++++|++|++++|.
T Consensus 80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 7666666656666666666666666666666545444 5666666666666666654433 346666666666666666
Q ss_pred ccccccccc--------------------------cCCCC------CcEEEcccCccccccchhhhC-------------
Q 017912 212 LTGSIPDSI--------------------------GNMYR------LADLDLSMNQISGPIPDILGK------------- 246 (364)
Q Consensus 212 ~~~~~~~~l--------------------------~~l~~------L~~L~l~~n~l~~~~~~~l~~------------- 246 (364)
+++..+..+ ..+.+ |++|++++|.+++..+..+..
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 554444333 33322 677777777655444333221
Q ss_pred -------------------------CCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEE
Q 017912 247 -------------------------MLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMAL 301 (364)
Q Consensus 247 -------------------------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 301 (364)
.++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..+..+++|++|
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 2568888888888887777778888889999999999988888888888999999
Q ss_pred EccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCC-CCCCCCCCcccccCCCCCC
Q 017912 302 DLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV-GSPFDHLEASSFDSNDCLC 357 (364)
Q Consensus 302 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~-~~~~~~l~~l~l~~n~~~c 357 (364)
++++|.+++..+..+..+++|+.|++++|++.+..+. ...+++|+.|++++|....
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 9999999877788888899999999999988766554 3568889999999988653
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=8.2e-31 Score=254.45 Aligned_cols=133 Identities=24% Similarity=0.272 Sum_probs=85.5
Q ss_pred cCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCc--ccchhhhCCCCCCEEEcccCCCccccCc-cccCCCC
Q 017912 221 GNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSG--KIPSTLLSNTGMGILNLSRNALGGNIPD-VFGSKSY 297 (364)
Q Consensus 221 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~~~~ 297 (364)
..+++|++|++++|.+++..|..++.+++|++|++++|.+++ .+|..+..+++|++|++++|++++.+|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 345566666666666666566666666666677776666664 3445566666677777777776653443 3566667
Q ss_pred CCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCC-CCCCCCCCcccccCCCCC
Q 017912 298 FMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV-GSPFDHLEASSFDSNDCL 356 (364)
Q Consensus 298 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~-~~~~~~l~~l~l~~n~~~ 356 (364)
|++|++++|++++..|..+. ++|+.|++++|+++ .+|. ...+++|+.+++++|+..
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 77777777776655555443 56777777777776 4443 346777777888777655
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.1e-31 Score=242.96 Aligned_cols=232 Identities=25% Similarity=0.249 Sum_probs=148.8
Q ss_pred CCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCC--CCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchh
Q 017912 128 ASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSG--EIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRA 205 (364)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 205 (364)
++|++|++++|.++...+..+.++++|++|++++|.++. ..+..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 466677777776663333345666777777777766652 22455556667777777777665 455556666777777
Q ss_pred hcCCcccccccc-ccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCc-ccchhhhCCCCCCEEEcccCC
Q 017912 206 LLRGNKLTGSIP-DSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSG-KIPSTLLSNTGMGILNLSRNA 283 (364)
Q Consensus 206 ~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~ 283 (364)
++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|+
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 777776664433 456666677777777776666666666666677777777776664 355666666677777777777
Q ss_pred CccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCC-CCC-CCCCcccccCCCCCCCCC
Q 017912 284 LGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVG-SPF-DHLEASSFDSNDCLCGNP 360 (364)
Q Consensus 284 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~-~~~-~~l~~l~l~~n~~~c~~~ 360 (364)
+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|.. ..+ ++|+.+++++|++.|+|+
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 76666666666677777777777766555555666667777777777766655542 334 366667777777766665
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.3e-30 Score=235.15 Aligned_cols=258 Identities=21% Similarity=0.260 Sum_probs=222.5
Q ss_pred CCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCC
Q 017912 89 GYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEI 168 (364)
Q Consensus 89 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 168 (364)
+.++ .+|..+. +.+++|++++ +.+++..+..+.++++|++|++++|.+++..|..+.++++|++|++++|.++ .+
T Consensus 41 ~~l~-~lp~~~~--~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l 115 (330)
T 1xku_A 41 LGLE-KVPKDLP--PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115 (330)
T ss_dssp SCCC-SCCCSCC--TTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BC
T ss_pred CCcc-ccCccCC--CCCeEEECCC-CcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-cc
Confidence 4443 3444443 6899999994 8888877778999999999999999999888999999999999999999998 67
Q ss_pred chhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccc--cccccccCCCCCcEEEcccCccccccchhhhC
Q 017912 169 PSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTG--SIPDSIGNMYRLADLDLSMNQISGPIPDILGK 246 (364)
Q Consensus 169 p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 246 (364)
|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+.++++|++|++++|.++. +|..+
T Consensus 116 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~-- 190 (330)
T 1xku_A 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL-- 190 (330)
T ss_dssp CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--
T ss_pred Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccc--
Confidence 76554 799999999999997777779999999999999999863 667788999999999999999984 55443
Q ss_pred CCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEE
Q 017912 247 MLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLD 326 (364)
Q Consensus 247 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 326 (364)
.++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 191 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~ 269 (330)
T 1xku_A 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 269 (330)
T ss_dssp CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEE
Confidence 389999999999999888889999999999999999999888888999999999999999998 7888999999999999
Q ss_pred ccCCcCcccCCCC-------CCCCCCCcccccCCCCCC
Q 017912 327 LSHNHLCGPIPVG-------SPFDHLEASSFDSNDCLC 357 (364)
Q Consensus 327 l~~N~l~g~ip~~-------~~~~~l~~l~l~~n~~~c 357 (364)
+++|++++..+.. .....++.+++.+||..+
T Consensus 270 l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 9999998654432 124678889999999865
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=2e-30 Score=259.70 Aligned_cols=275 Identities=24% Similarity=0.260 Sum_probs=176.3
Q ss_pred CceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcC
Q 017912 66 RRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIP 145 (364)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 145 (364)
.+++.+++++ +.+++..+..+.++++|++|+++ .+.+++..|..+.++++|++|++++|.+++..+
T Consensus 25 ~~l~~L~Ls~-------------n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 25 TNITVLNLTH-------------NQLRRLPAANFTRYSQLTSLDVG-FNTISKLEPELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp TTCSEEECCS-------------SCCCCCCGGGGGGGTTCSEEECC-SSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred CCCcEEECCC-------------CCCCCcCHHHHhCCCcCcEEECC-CCccCccCHHHHhcccCcCEEECCCCccCccCh
Confidence 4788889888 67777666677778888888887 367777777777777888888888887775444
Q ss_pred ccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCcccccccccccc--CC
Q 017912 146 DDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIG--NM 223 (364)
Q Consensus 146 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~l 223 (364)
..|.++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+. .+
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence 4677778888888888877755556677777888888888877776677777777777777777777655554433 34
Q ss_pred CCCcEEEcccCccccccchhhhCC---------------------------CCCCEEEccCCcCCcccchhhhCCC--CC
Q 017912 224 YRLADLDLSMNQISGPIPDILGKM---------------------------LVLSTLNLDSNLLSGKIPSTLLSNT--GM 274 (364)
Q Consensus 224 ~~L~~L~l~~n~l~~~~~~~l~~l---------------------------~~L~~L~l~~n~l~~~~~~~~~~~~--~L 274 (364)
++|++|++++|.+++..+..++.+ ++|++|++++|.+++..|..+..++ +|
T Consensus 171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L 250 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250 (680)
T ss_dssp CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCC
Confidence 566777777766665544443322 3344455555555544444444432 25
Q ss_pred CEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcch---------------------------------hcccCCC
Q 017912 275 GILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPG---------------------------------SLSSSAY 321 (364)
Q Consensus 275 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~---------------------------------~l~~l~~ 321 (364)
++|++++|++++..+..++.+++|++|++++|.+++..|. .+..+++
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 5555555555555555555555555555555555444333 3445566
Q ss_pred CCeEEccCCcCcccCCC-CCCCCCCCcccccCCC
Q 017912 322 IGHLDLSHNHLCGPIPV-GSPFDHLEASSFDSND 354 (364)
Q Consensus 322 L~~L~l~~N~l~g~ip~-~~~~~~l~~l~l~~n~ 354 (364)
|++|++++|++++..|. ...+++|+.+++++|.
T Consensus 331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred CCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 66666666666655443 2456667777777664
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.6e-30 Score=254.05 Aligned_cols=137 Identities=23% Similarity=0.204 Sum_probs=87.5
Q ss_pred cCCCCCcEEEcccCccccccc--hhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCc--------
Q 017912 221 GNMYRLADLDLSMNQISGPIP--DILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPD-------- 290 (364)
Q Consensus 221 ~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------- 290 (364)
+.+++|++|++++|.+++..+ ..++.+++|++|++++|.++ .+|..+..+++|++|++++|++++....
T Consensus 358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L 436 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVL 436 (549)
T ss_dssp TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEE
T ss_pred hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEE
Confidence 344444444444444443211 23455555666666666555 4455555555555555555555421110
Q ss_pred ---------cccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCC-CCCCCCCCcccccCCCCCCCCC
Q 017912 291 ---------VFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV-GSPFDHLEASSFDSNDCLCGNP 360 (364)
Q Consensus 291 ---------~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~-~~~~~~l~~l~l~~n~~~c~~~ 360 (364)
....+++|++|++++|+++ .+|. ...+++|++|++++|++++.+|. ...+++|+.+++++|++.|+|+
T Consensus 437 ~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 437 DVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 1125677788888888887 5665 45788999999999999987775 4678899999999999999987
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.6e-30 Score=235.12 Aligned_cols=265 Identities=22% Similarity=0.245 Sum_probs=227.1
Q ss_pred eEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCcc
Q 017912 68 VTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDD 147 (364)
Q Consensus 68 v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~ 147 (364)
++.+++++ +.++ .+|..+. +++++|++++ +.+++..|..+.++++|++|++++|.+++..|..
T Consensus 35 l~~l~~~~-------------~~l~-~ip~~~~--~~l~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 97 (332)
T 2ft3_A 35 LRVVQCSD-------------LGLK-AVPKEIS--PDTTLLDLQN-NDISELRKDDFKGLQHLYALVLVNNKISKIHEKA 97 (332)
T ss_dssp TTEEECCS-------------SCCS-SCCSCCC--TTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred CCEEECCC-------------CCcc-ccCCCCC--CCCeEEECCC-CcCCccCHhHhhCCCCCcEEECCCCccCccCHhH
Confidence 44677776 4454 4555553 6899999994 8888877888999999999999999999878899
Q ss_pred ccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCcccc--ccccccccCCCC
Q 017912 148 IGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLT--GSIPDSIGNMYR 225 (364)
Q Consensus 148 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~ 225 (364)
+.++++|++|++++|.++ .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.++ +..+..+..+ +
T Consensus 98 ~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173 (332)
T ss_dssp STTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred hhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence 999999999999999998 6776654 89999999999999666667999999999999999996 3667777777 9
Q ss_pred CcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccC
Q 017912 226 LADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSY 305 (364)
Q Consensus 226 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 305 (364)
|++|++++|.+++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 174 L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 174 LNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250 (332)
T ss_dssp CSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred cCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence 9999999999985 555443 7899999999999987778899999999999999999988888899999999999999
Q ss_pred CcCCCCcchhcccCCCCCeEEccCCcCcccCCCC-------CCCCCCCcccccCCCCCC
Q 017912 306 NNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVG-------SPFDHLEASSFDSNDCLC 357 (364)
Q Consensus 306 n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~-------~~~~~l~~l~l~~n~~~c 357 (364)
|+++ .+|..+..+++|+.|++++|++++..+.. .....++.+++.+|+..+
T Consensus 251 N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 251 NKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp SCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred CcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 9998 78888999999999999999998654432 124678899999999874
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.4e-30 Score=264.09 Aligned_cols=139 Identities=23% Similarity=0.373 Sum_probs=88.4
Q ss_pred ccCcccc--CCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCc-CCC-CcCccccCCC-------CCCEEEcccC
Q 017912 94 SINPAIC--QLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNK-LSG-KIPDDIGNLQ-------KLTVLNLADN 162 (364)
Q Consensus 94 ~~~~~~~--~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n 162 (364)
.+|+.++ ++++|++|+++ .|.+.+.+|..+.++++|++|++++|. +++ .+|..+++++ +|++|++++|
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls-~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELY-NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEE-SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred cCChhhhhccCCCCCEEECc-CCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 3666666 77777777776 366667777777777777777777776 665 5665554443 6666666666
Q ss_pred CCCCCCch--hhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCC-CcEEEcccCccc
Q 017912 163 AVSGEIPS--SLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYR-LADLDLSMNQIS 237 (364)
Q Consensus 163 ~l~~~~p~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l~ 237 (364)
.++ .+|. .+.++++|++|++++|.++ .+| .++.+++|++|++++|+++ .+|..+.++++ |++|++++|.++
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 666 5666 6666666666666666666 555 5666666666666666655 55555555555 555555555544
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=8e-30 Score=260.98 Aligned_cols=263 Identities=21% Similarity=0.216 Sum_probs=181.5
Q ss_pred CCcccccCccccCCCCCCEEecCCCCCCcccCccc--cCCCCCCCEEEccCCcCCCCcC-ccccCCCCCCEEEcccCCCC
Q 017912 89 GYMTGSINPAICQLDTLSTLVIADWKGISGQLPSC--ITSIASLRVLDLVGNKLSGKIP-DDIGNLQKLTVLNLADNAVS 165 (364)
Q Consensus 89 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 165 (364)
|.+.+..|..+.++++|++|+++ .|.+++.+|.. +.++++|++|++++|.+++..+ ..++++++|++|++++|.++
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLY-FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECT-TCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CcCcccCHhHccCCcccCEeeCc-CCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 44444444444444445555444 24444433332 4444455555555554443322 23444555555555555444
Q ss_pred CCCchhhhcC--CCCCEEEccCCcCCCccCccCCCCCc------cchhhcCCccccccccccccC---------------
Q 017912 166 GEIPSSLVRL--SSLKHLDLSNNQLSGKIPADFGNLKM------LSRALLRGNKLTGSIPDSIGN--------------- 222 (364)
Q Consensus 166 ~~~p~~l~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~------L~~L~l~~n~~~~~~~~~l~~--------------- 222 (364)
+..+..+..+ ++|++|+++.|.+.+..+..++.+++ |++|++++|.+++..+..+..
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 4444444433 44555555555554444444444444 888888888776555443321
Q ss_pred -----------------------CCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEc
Q 017912 223 -----------------------MYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNL 279 (364)
Q Consensus 223 -----------------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 279 (364)
.++|++|++++|.+.+..+..++.+++|+.|++++|.+++..+..+..+++|++|++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 257999999999999888888999999999999999999888889999999999999
Q ss_pred ccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCCCCCCCCCcccccCCCCC
Q 017912 280 SRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCL 356 (364)
Q Consensus 280 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~l~~l~l~~n~~~ 356 (364)
++|++++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++ ++ .+++|+.+++++|+..
T Consensus 322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~---~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH---FIPSIPDIFLSGNKLV 394 (844)
T ss_dssp ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS---SCCSCSEEEEESCCCC
T ss_pred CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc---CCCCcchhccCCCCcc
Confidence 9999998889999999999999999999998778889999999999999999985 33 2566777777777654
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=2.8e-30 Score=236.04 Aligned_cols=225 Identities=19% Similarity=0.264 Sum_probs=207.5
Q ss_pred CCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchh
Q 017912 126 SIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRA 205 (364)
Q Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 205 (364)
..+++++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999999 78888999999999999999999 89999999999999999999998 889999999999999
Q ss_pred hcCCccccccccccccC---------CCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCE
Q 017912 206 LLRGNKLTGSIPDSIGN---------MYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGI 276 (364)
Q Consensus 206 ~l~~n~~~~~~~~~l~~---------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 276 (364)
++++|++.+.+|..+.. +++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCE
Confidence 99999999899987764 999999999999998 88889999999999999999999 46778999999999
Q ss_pred EEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCC-CCCCCCCcccccCCCC
Q 017912 277 LNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVG-SPFDHLEASSFDSNDC 355 (364)
Q Consensus 277 L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~-~~~~~l~~l~l~~n~~ 355 (364)
|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.|.+|.. ..+++++.+.+..|..
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999974 5677777777766544
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.9e-29 Score=236.10 Aligned_cols=265 Identities=23% Similarity=0.195 Sum_probs=215.8
Q ss_pred CCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCC
Q 017912 88 SGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGE 167 (364)
Q Consensus 88 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 167 (364)
.+.+++..+..+..+++|++|+++ .+.+++..|..+..+++|++|++++|.++...+..+.++++|++|++++|.+++.
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 156 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCcccccChhhccCCCCcCEEECC-CCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc
Confidence 466777777789999999999999 4888888888899999999999999999954444568999999999999999977
Q ss_pred CchhhhcCCCCCEEEccCCcCCCccCccCCC-------------------------------------CCccchhhcCCc
Q 017912 168 IPSSLVRLSSLKHLDLSNNQLSGKIPADFGN-------------------------------------LKMLSRALLRGN 210 (364)
Q Consensus 168 ~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-------------------------------------l~~L~~L~l~~n 210 (364)
.+..+..+++|++|++++|.+++.....+.. .++|++|++++|
T Consensus 157 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n 236 (390)
T 3o6n_A 157 EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 236 (390)
T ss_dssp CTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSS
T ss_pred ChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCC
Confidence 7778889999999999999887432221211 124666666666
Q ss_pred cccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCc
Q 017912 211 KLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPD 290 (364)
Q Consensus 211 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 290 (364)
.+++. ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ++..+..+++|++|++++|+++ .+|.
T Consensus 237 ~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~ 312 (390)
T 3o6n_A 237 NLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVER 312 (390)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGG
T ss_pred CCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCc
Confidence 66643 467889999999999999998889999999999999999999984 5666778899999999999998 5566
Q ss_pred cccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCCCCCCCCCcccccCCCCCCCCCC
Q 017912 291 VFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNPL 361 (364)
Q Consensus 291 ~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~l~~l~l~~n~~~c~~~~ 361 (364)
.+..+++|+.|++++|.+++. + +..+++|+.|++++|++.+.-.. ..+..+....+..++..|.++.
T Consensus 313 ~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~~ 379 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKIDY 379 (390)
T ss_dssp GHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTTC
T ss_pred cccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecccc
Confidence 678899999999999999854 3 67889999999999999764322 3445566677788888888653
No 42
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=7.2e-30 Score=228.82 Aligned_cols=235 Identities=21% Similarity=0.175 Sum_probs=160.1
Q ss_pred CCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCC-CCCCCchhhhcCCCCCE
Q 017912 102 LDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNA-VSGEIPSSLVRLSSLKH 180 (364)
Q Consensus 102 l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~ 180 (364)
.+++++|+++ .+.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|. +....+..+..+++|++
T Consensus 31 ~~~l~~L~l~-~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLH-GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECT-TSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEee-CCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 3577777777 366776666667777778888887777776667777777777777777776 66444666777777777
Q ss_pred EEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcC
Q 017912 181 LDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLL 260 (364)
Q Consensus 181 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 260 (364)
|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 77777777766666677777777777777777755555567777777777777777655555566777777777777777
Q ss_pred CcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCC
Q 017912 261 SGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV 338 (364)
Q Consensus 261 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~ 338 (364)
++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+....+.. .-...++.+..+.+.+....|.
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence 7666667777777777777777777655556677777777777777776533311 0011233334555666666664
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.4e-29 Score=248.21 Aligned_cols=269 Identities=21% Similarity=0.184 Sum_probs=212.3
Q ss_pred CceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcC
Q 017912 66 RRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIP 145 (364)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 145 (364)
.+++.+++++ |.+++..+..+.++++|++|+++ .|.+++..|..|.++++|++|++++|.++ .+|
T Consensus 52 ~~L~~L~Ls~-------------N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 116 (562)
T 3a79_B 52 PRTKALSLSQ-------------NSISELRMPDISFLSELRVLRLS-HNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NIS 116 (562)
T ss_dssp TTCCEEECCS-------------SCCCCCCGGGTTTCTTCCEEECC-SCCCCEECTTTTTTCTTCCEEECTTSCCC-EEC
T ss_pred CCcCEEECCC-------------CCccccChhhhccCCCccEEECC-CCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccC
Confidence 4677777777 88888888899999999999999 48899888889999999999999999998 677
Q ss_pred ccccCCCCCCEEEcccCCCCC-CCchhhhcCCCCCEEEccCCcCCCccCccCCCCCcc--chhhcCCccc--cccccccc
Q 017912 146 DDIGNLQKLTVLNLADNAVSG-EIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKML--SRALLRGNKL--TGSIPDSI 220 (364)
Q Consensus 146 ~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L--~~L~l~~n~~--~~~~~~~l 220 (364)
.. .+++|++|++++|.+++ .+|..+.++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+
T Consensus 117 ~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l 191 (562)
T 3a79_B 117 CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESL 191 (562)
T ss_dssp SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccc
Confidence 66 89999999999999985 3468899999999999999998753 34555555 9999999988 66655555
Q ss_pred cCCC----------------------------------------------------------------------------
Q 017912 221 GNMY---------------------------------------------------------------------------- 224 (364)
Q Consensus 221 ~~l~---------------------------------------------------------------------------- 224 (364)
..+.
T Consensus 192 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence 4422
Q ss_pred -----CCcEEEcccCccccccchhh-----------------------------------------------------hC
Q 017912 225 -----RLADLDLSMNQISGPIPDIL-----------------------------------------------------GK 246 (364)
Q Consensus 225 -----~L~~L~l~~n~l~~~~~~~l-----------------------------------------------------~~ 246 (364)
+|++|++++|.+++.+|..+ +.
T Consensus 272 ~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 351 (562)
T 3a79_B 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS 351 (562)
T ss_dssp HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccC
Confidence 67777777777776665543 55
Q ss_pred CCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCcc--ccCccccCCCCCCEEEccCCcCCCCcch-hcccCCCCC
Q 017912 247 MLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGG--NIPDVFGSKSYFMALDLSYNNLKGPIPG-SLSSSAYIG 323 (364)
Q Consensus 247 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~ 323 (364)
+++|++|++++|.+++.+|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|. .+..+++|+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 6778888888888887777778888888888888888876 3345677888888888888888874554 466778888
Q ss_pred eEEccCCcCcccCCCCCCC-CCCCcccccCCCCC
Q 017912 324 HLDLSHNHLCGPIPVGSPF-DHLEASSFDSNDCL 356 (364)
Q Consensus 324 ~L~l~~N~l~g~ip~~~~~-~~l~~l~l~~n~~~ 356 (364)
+|++++|++++.+|. .+ ++|+.|++++|...
T Consensus 432 ~L~l~~n~l~~~~~~--~l~~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 432 VLNLSSNMLTGSVFR--CLPPKVKVLDLHNNRIM 463 (562)
T ss_dssp EEECCSSCCCGGGGS--SCCTTCSEEECCSSCCC
T ss_pred EEECCCCCCCcchhh--hhcCcCCEEECCCCcCc
Confidence 888888888877776 33 58888888888754
No 44
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1.3e-29 Score=227.05 Aligned_cols=251 Identities=24% Similarity=0.230 Sum_probs=210.1
Q ss_pred CEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccC
Q 017912 106 STLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSN 185 (364)
Q Consensus 106 ~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 185 (364)
++++.++ ++++ .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~~~c~~-~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQ-QGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCS-SCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCc-CCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 5677663 5554 455433 46899999999999977777899999999999999999977788899999999999999
Q ss_pred Cc-CCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCccc
Q 017912 186 NQ-LSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKI 264 (364)
Q Consensus 186 n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 264 (364)
|. +....+..+..+++|++|++++|++++..+..+.++++|++|++++|.+++..+..++.+++|++|++++|.+++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 97 77666788999999999999999999877888899999999999999998777777889999999999999998666
Q ss_pred chhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCCCCCCC
Q 017912 265 PSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDH 344 (364)
Q Consensus 265 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~ 344 (364)
+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++....+....+..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~ 249 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHH
Confidence 66788899999999999999988898999999999999999999987777788999999999999998865554333344
Q ss_pred CCcccccCCCCCCCCC
Q 017912 345 LEASSFDSNDCLCGNP 360 (364)
Q Consensus 345 l~~l~l~~n~~~c~~~ 360 (364)
++.+....+...|.-|
T Consensus 250 l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 250 LQKFRGSSSEVPCSLP 265 (285)
T ss_dssp HHHCCSEECCCBEEES
T ss_pred HHhcccccCccccCCc
Confidence 5556667777777543
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.6e-29 Score=247.88 Aligned_cols=265 Identities=23% Similarity=0.202 Sum_probs=219.6
Q ss_pred CCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCC
Q 017912 87 RSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSG 166 (364)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 166 (364)
..+.+++..+..+..+++|++|+++ .|.+++..|..|+.+++|++|++++|.+++..+..|+++++|++|++++|.+++
T Consensus 83 ~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 83 NDLQIEEIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCCCCCChHHhcCCCCCCEEECC-CCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC
Confidence 3577888888899999999999999 488998888888999999999999999996555567999999999999999998
Q ss_pred CCchhhhcCCCCCEEEccCCcCCCccCccCCCC-------------------------------------CccchhhcCC
Q 017912 167 EIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNL-------------------------------------KMLSRALLRG 209 (364)
Q Consensus 167 ~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l-------------------------------------~~L~~L~l~~ 209 (364)
..|..+..+++|++|++++|.+++.....+..+ ++|+.|++++
T Consensus 162 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~ 241 (597)
T 3oja_B 162 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH 241 (597)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCS
T ss_pred CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCC
Confidence 888889999999999999999875422222111 2456666666
Q ss_pred ccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccC
Q 017912 210 NKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIP 289 (364)
Q Consensus 210 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 289 (364)
|.+++ +..+..+++|++|++++|.+++..|..++.+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|
T Consensus 242 n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~ 317 (597)
T 3oja_B 242 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVE 317 (597)
T ss_dssp SCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCG
T ss_pred CCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccC
Confidence 66664 3568889999999999999999999999999999999999999985 6777778899999999999999 567
Q ss_pred ccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCCCCCCCCCcccccCCCCCCCCC
Q 017912 290 DVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNP 360 (364)
Q Consensus 290 ~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~l~~l~l~~n~~~c~~~ 360 (364)
..+..+++|+.|++++|.+++. + +..+++|+.|++++|++.+..+. ..+..+....+.+++..|+.+
T Consensus 318 ~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 318 RNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp GGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred cccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 7788899999999999999854 3 66789999999999999865432 245555666677888888753
No 46
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=1.8e-31 Score=242.43 Aligned_cols=231 Identities=22% Similarity=0.261 Sum_probs=121.4
Q ss_pred ccCccccCCCCCCEEecCCCCCC-cccCccccC-------CCCCCCEEEccCCcCCCCcCccc--cCCCCCCEEEcccCC
Q 017912 94 SINPAICQLDTLSTLVIADWKGI-SGQLPSCIT-------SIASLRVLDLVGNKLSGKIPDDI--GNLQKLTVLNLADNA 163 (364)
Q Consensus 94 ~~~~~~~~l~~L~~L~l~~~~~l-~~~~p~~l~-------~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~ 163 (364)
.+|..+... |++|++++ +.+ .+.+|..+. ++++|++|++++|.+++.+|..+ ..+++|++|++++|.
T Consensus 56 ~~p~~~~~~--L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 132 (312)
T 1wwl_A 56 ADLGQFTDI--IKSLSLKR-LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132 (312)
T ss_dssp CCCHHHHHH--HHHCCCCE-EEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB
T ss_pred ccHHHHHHH--Hhhccccc-ccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC
Confidence 445444333 55555552 444 334444443 45666666666666665555554 566666666666666
Q ss_pred CCCCCchhhhcC-----CCCCEEEccCCcCCCccCccCCCCCccchhhcCCcccccc--ccccc--cCCCCCcEEEcccC
Q 017912 164 VSGEIPSSLVRL-----SSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGS--IPDSI--GNMYRLADLDLSMN 234 (364)
Q Consensus 164 l~~~~p~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l--~~l~~L~~L~l~~n 234 (364)
+++. |..+..+ ++|++|++++|.+.+..+..++.+++|++|++++|++.+. .+..+ ..+++|++|++++|
T Consensus 133 l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 133 WATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp CSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred Ccch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence 6644 5555544 5666666666666555555566666666666666655443 22222 45555555555555
Q ss_pred cccc--ccc-hhhhCCCCCCEEEccCCcCCcccc-hhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCC
Q 017912 235 QISG--PIP-DILGKMLVLSTLNLDSNLLSGKIP-STLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKG 310 (364)
Q Consensus 235 ~l~~--~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 310 (364)
.+++ .++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|+++ .+|..+. ++|++|++++|++++
T Consensus 212 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR 288 (312)
T ss_dssp CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCS
T ss_pred cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCC
Confidence 5542 111 222344555555555555554332 23333455555555555555 3444333 455555555555553
Q ss_pred CcchhcccCCCCCeEEccCCcCc
Q 017912 311 PIPGSLSSSAYIGHLDLSHNHLC 333 (364)
Q Consensus 311 ~~~~~l~~l~~L~~L~l~~N~l~ 333 (364)
. |. +..+++|++|++++|+++
T Consensus 289 ~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 289 N-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp C-CC-TTTSCEEEEEECTTCTTT
T ss_pred C-hh-HhhCCCCCEEeccCCCCC
Confidence 3 33 445555555555555554
No 47
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2.9e-28 Score=224.36 Aligned_cols=240 Identities=23% Similarity=0.336 Sum_probs=157.3
Q ss_pred ccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCC
Q 017912 99 ICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSL 178 (364)
Q Consensus 99 ~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 178 (364)
+.++++|++|++++ +.+.+ ++. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+. +. +..+++|
T Consensus 106 ~~~l~~L~~L~l~~-n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-~~-~~~l~~L 179 (347)
T 4fmz_A 106 LQNLTNLRELYLNE-DNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV-TP-IANLTDL 179 (347)
T ss_dssp GTTCTTCSEEECTT-SCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTC
T ss_pred HcCCCcCCEEECcC-CcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCc-hh-hccCCCC
Confidence 44444444444442 33332 121 4444444444444443332222 244555555555555555422 22 4555666
Q ss_pred CEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCC
Q 017912 179 KHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSN 258 (364)
Q Consensus 179 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 258 (364)
++|++++|.+.+. +. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 180 ~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 180 YSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN 253 (347)
T ss_dssp SEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC
Confidence 6666666665532 22 5566666666666666654333 6677788888888888875543 778888888888888
Q ss_pred cCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCC
Q 017912 259 LLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV 338 (364)
Q Consensus 259 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~ 338 (364)
.+++ + ..+..+++|++|++++|++++. ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|
T Consensus 254 ~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~- 328 (347)
T 4fmz_A 254 QISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP- 328 (347)
T ss_dssp CCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-
T ss_pred ccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-
Confidence 8874 3 4577788899999999888864 357788899999999999988888888899999999999999887766
Q ss_pred CCCCCCCCcccccCCCC
Q 017912 339 GSPFDHLEASSFDSNDC 355 (364)
Q Consensus 339 ~~~~~~l~~l~l~~n~~ 355 (364)
...+++|+.+++++|+.
T Consensus 329 ~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 329 LASLSKMDSADFANQVI 345 (347)
T ss_dssp GGGCTTCSEESSSCC--
T ss_pred hhhhhccceeehhhhcc
Confidence 57888999999999875
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.3e-28 Score=234.95 Aligned_cols=228 Identities=21% Similarity=0.223 Sum_probs=192.9
Q ss_pred CCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEE
Q 017912 103 DTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLD 182 (364)
Q Consensus 103 ~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 182 (364)
+++++|+++ .|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+|++|.+++..+..+..+++|++|+
T Consensus 75 ~~l~~L~L~-~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLM-ENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECC-SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECc-CCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 578999998 4888888888889999999999999999877778888999999999999998865566678889999999
Q ss_pred ccCCcCCCccCccCCCCCccchhhcCCcccccccc-ccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCC
Q 017912 183 LSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIP-DSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLS 261 (364)
Q Consensus 183 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 261 (364)
+++|.++...+..+..+++|++|++++|...+.++ ..+.++++|++|++++|.+++. | .+..+++|++|++++|.++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence 99999886666678889999999998854444444 4678889999999999988754 4 4778889999999999999
Q ss_pred cccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCc
Q 017912 262 GKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLC 333 (364)
Q Consensus 262 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~ 333 (364)
+..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 888888889999999999999999888888899999999999999998777777888899999999998753
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.5e-28 Score=232.21 Aligned_cols=228 Identities=22% Similarity=0.229 Sum_probs=193.9
Q ss_pred CCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEE
Q 017912 103 DTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLD 182 (364)
Q Consensus 103 ~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 182 (364)
+++++|+++ .|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+|++|++++..+..+..+++|++|+
T Consensus 64 ~~l~~L~L~-~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLH-ENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECC-SCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEcc-CCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 578899998 4888887788899999999999999999877777888999999999999999855556788889999999
Q ss_pred ccCCcCCCccCccCCCCCccchhhcCCcccccccc-ccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCC
Q 017912 183 LSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIP-DSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLS 261 (364)
Q Consensus 183 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 261 (364)
+++|.+....+..+..+++|++|++++|...+.++ ..+.++++|++|++++|.++ .+| .+..+++|++|++++|.++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccC
Confidence 99999886666678899999999999855444444 46888899999999999887 444 4778889999999999998
Q ss_pred cccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCc
Q 017912 262 GKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLC 333 (364)
Q Consensus 262 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~ 333 (364)
+..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 877888889999999999999999888888999999999999999999777777888999999999999763
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=6.4e-31 Score=238.77 Aligned_cols=250 Identities=24% Similarity=0.221 Sum_probs=212.7
Q ss_pred cccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCC-CCcCcccc-------CCCCCCEEEcccCCCCCCCc
Q 017912 98 AICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLS-GKIPDDIG-------NLQKLTVLNLADNAVSGEIP 169 (364)
Q Consensus 98 ~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~p 169 (364)
.++..++|+++++++ +.+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|.+++.+|
T Consensus 38 ~~~~~~~L~~l~l~~-n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRV-DTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHC-CTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeecc-ccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 456677899999984 777 677766554 899999999984 45666665 79999999999999998899
Q ss_pred hhh--hcCCCCCEEEccCCcCCCccCccCCCC-----CccchhhcCCccccccccccccCCCCCcEEEcccCccccc--c
Q 017912 170 SSL--VRLSSLKHLDLSNNQLSGKIPADFGNL-----KMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGP--I 240 (364)
Q Consensus 170 ~~l--~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~ 240 (364)
..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..+..++++++|++|++++|++.+. .
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 876 8899999999999999976 7777776 8999999999999988889999999999999999998765 3
Q ss_pred chhh--hCCCCCCEEEccCCcCCc--ccc-hhhhCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEccCCcCCCCcch
Q 017912 241 PDIL--GKMLVLSTLNLDSNLLSG--KIP-STLLSNTGMGILNLSRNALGGNIP-DVFGSKSYFMALDLSYNNLKGPIPG 314 (364)
Q Consensus 241 ~~~l--~~l~~L~~L~l~~n~l~~--~~~-~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~ 314 (364)
+..+ +.+++|++|++++|.+++ .++ ..+..+++|++|++++|++++..| ..+..+++|++|++++|+++ .+|.
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh
Confidence 4455 789999999999999983 222 344678999999999999998775 45677899999999999998 7887
Q ss_pred hcccCCCCCeEEccCCcCcccCCCCCCCCCCCcccccCCCCCC
Q 017912 315 SLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLC 357 (364)
Q Consensus 315 ~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~l~~l~l~~n~~~c 357 (364)
.+. ++|++|++++|++++. |....+++|+.+++++|++..
T Consensus 271 ~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 271 GLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTC
T ss_pred hcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCC
Confidence 776 8999999999999977 767889999999999999753
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.5e-29 Score=231.19 Aligned_cols=271 Identities=22% Similarity=0.258 Sum_probs=226.4
Q ss_pred CCCCCCccceEecCC-----------CCceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcc
Q 017912 50 DNCCTNWYGVSCDPT-----------TRRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISG 118 (364)
Q Consensus 50 ~~~c~~w~gv~c~~~-----------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 118 (364)
...|. |.|+ |+.. ..+++.+++++ +.+++..+..+.++++|++|+++ .|.+++
T Consensus 27 ~~~C~-~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~-------------n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~ 90 (353)
T 2z80_A 27 SLSCD-RNGI-CKGSSGSLNSIPSGLTEAVKSLDLSN-------------NRITYISNSDLQRCVNLQALVLT-SNGINT 90 (353)
T ss_dssp CCEEC-TTSE-EECCSTTCSSCCTTCCTTCCEEECTT-------------SCCCEECTTTTTTCTTCCEEECT-TSCCCE
T ss_pred CCCCC-CCeE-eeCCCCCcccccccccccCcEEECCC-------------CcCcccCHHHhccCCCCCEEECC-CCccCc
Confidence 33465 8887 6532 13577788877 88888777789999999999999 488998
Q ss_pred cCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCch--hhhcCCCCCEEEccCCc-CCCccCcc
Q 017912 119 QLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPS--SLVRLSSLKHLDLSNNQ-LSGKIPAD 195 (364)
Q Consensus 119 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n~-~~~~~~~~ 195 (364)
..+..+.++++|++|++++|.+++..+..+.++++|++|++++|+++ .+|. .+.++++|++|++++|. +....+..
T Consensus 91 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 169 (353)
T 2z80_A 91 IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169 (353)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTT
T ss_pred cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHH
Confidence 88888999999999999999999655555899999999999999999 4554 78899999999999995 66555678
Q ss_pred CCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhh---hCCC
Q 017912 196 FGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTL---LSNT 272 (364)
Q Consensus 196 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---~~~~ 272 (364)
+..+++|++|++++|++++..|..+.++++|++|++++|.++......+..+++|++|++++|.+++..+..+ ....
T Consensus 170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~ 249 (353)
T 2z80_A 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249 (353)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCC
T ss_pred ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccc
Confidence 9999999999999999998889999999999999999999975444455678999999999999986554433 2457
Q ss_pred CCCEEEcccCCCcc----ccCccccCCCCCCEEEccCCcCCCCcchh-cccCCCCCeEEccCCcCcccCCC
Q 017912 273 GMGILNLSRNALGG----NIPDVFGSKSYFMALDLSYNNLKGPIPGS-LSSSAYIGHLDLSHNHLCGPIPV 338 (364)
Q Consensus 273 ~L~~L~l~~n~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~N~l~g~ip~ 338 (364)
.++.++++++.+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+..|.
T Consensus 250 ~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred hhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 78999999999986 36778899999999999999999 56655 58999999999999999987763
No 52
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2.4e-27 Score=218.30 Aligned_cols=252 Identities=20% Similarity=0.277 Sum_probs=194.5
Q ss_pred CCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCC
Q 017912 89 GYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEI 168 (364)
Q Consensus 89 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 168 (364)
+.+++.. + +..+++|++|++++ +.+++ ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.....+
T Consensus 76 n~i~~~~-~-~~~l~~L~~L~L~~-n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~ 148 (347)
T 4fmz_A 76 NQITDIS-P-LSNLVKLTNLYIGT-NKITD-IS-ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL 148 (347)
T ss_dssp SCCCCCG-G-GTTCTTCCEEECCS-SCCCC-CG-GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC
T ss_pred Cccccch-h-hhcCCcCCEEEccC-CcccC-ch-HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc
Confidence 5555432 2 77888888888874 66654 33 477888888888888888743 33 777888888888888655343
Q ss_pred chhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCC
Q 017912 169 PSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKML 248 (364)
Q Consensus 169 p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 248 (364)
+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. +. +..+++|+++++++|.+++..+ +..++
T Consensus 149 ~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~ 221 (347)
T 4fmz_A 149 S-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMT 221 (347)
T ss_dssp G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCT
T ss_pred c-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCC
Confidence 3 47788888888888888764332 77888888888888888743 33 7788888999998888875544 77889
Q ss_pred CCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEcc
Q 017912 249 VLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLS 328 (364)
Q Consensus 249 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 328 (364)
+|++|++++|.+++.. . +..+++|++|++++|++++. ..+..+++|++|++++|.+++. ..+..+++|+.|+++
T Consensus 222 ~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 222 RLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLN 295 (347)
T ss_dssp TCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred cCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECc
Confidence 9999999999998543 3 78889999999999999864 4678899999999999999864 458889999999999
Q ss_pred CCcCcccCCC-CCCCCCCCcccccCCCCCCCCC
Q 017912 329 HNHLCGPIPV-GSPFDHLEASSFDSNDCLCGNP 360 (364)
Q Consensus 329 ~N~l~g~ip~-~~~~~~l~~l~l~~n~~~c~~~ 360 (364)
+|++++..|. ...+++|+.+++++|+.....|
T Consensus 296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp SSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 9999877664 3568899999999999766533
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=5.5e-28 Score=236.98 Aligned_cols=268 Identities=18% Similarity=0.199 Sum_probs=201.9
Q ss_pred CceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcC
Q 017912 66 RRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIP 145 (364)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 145 (364)
.+++.+++++ +.+++..+..+.++++|++|++++ +.+++..+..|.++++|++|++++|.+++..|
T Consensus 28 ~~l~~L~Ls~-------------n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 28 FSTKNLDLSF-------------NPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (570)
T ss_dssp SSCCEEECCS-------------CCCCEECTTTTTTCSSCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred ccccEEEccC-------------CccCccChhHhhCCCCceEEECCC-CcCCccCcccccCchhCCEEeCcCCcCCccCH
Confidence 4688899988 888888888899999999999994 78888777889999999999999999997777
Q ss_pred ccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCC-ccCccCCCCCccchhhcCCccccccccccccCCC
Q 017912 146 DDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSG-KIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMY 224 (364)
Q Consensus 146 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 224 (364)
..|.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|++++..+..++.++
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH
T ss_pred hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh
Confidence 889999999999999999985544468899999999999999876 4688899999999999999999877777777777
Q ss_pred CC----cEEEcccCccccccchhhhCCCCCCEEEccCC------------------------------------------
Q 017912 225 RL----ADLDLSMNQISGPIPDILGKMLVLSTLNLDSN------------------------------------------ 258 (364)
Q Consensus 225 ~L----~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n------------------------------------------ 258 (364)
+| +++++++|.+++..+..+... +|++|++++|
T Consensus 174 ~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 252 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252 (570)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTG
T ss_pred ccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhc
Confidence 77 788888888876666555443 5666666554
Q ss_pred ----------------cCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCC
Q 017912 259 ----------------LLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYI 322 (364)
Q Consensus 259 ----------------~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 322 (364)
.+.+..+..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|
T Consensus 253 ~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L 327 (570)
T 2z63_A 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSL 327 (570)
T ss_dssp GGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSC
T ss_pred cccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--cccccc
Confidence 222334455556677777777777776 456666666 7777777777766 4443 345566
Q ss_pred CeEEccCCcCcccCCCCCCCCCCCcccccCCC
Q 017912 323 GHLDLSHNHLCGPIPVGSPFDHLEASSFDSND 354 (364)
Q Consensus 323 ~~L~l~~N~l~g~ip~~~~~~~l~~l~l~~n~ 354 (364)
+.|++++|.+.+..+. ..+++|+.+++++|.
T Consensus 328 ~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 328 KRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG 358 (570)
T ss_dssp CEEEEESCBSCCBCCC-CBCTTCCEEECCSSC
T ss_pred CEEeCcCCcccccccc-ccCCCCCEEeCcCCc
Confidence 6666666665555544 455555566655554
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=3.1e-27 Score=226.28 Aligned_cols=259 Identities=25% Similarity=0.378 Sum_probs=130.7
Q ss_pred CceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcC
Q 017912 66 RRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIP 145 (364)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 145 (364)
.+++.+++++ +.+++..+ +.++++|++|++++ +.+++..+ +.++++|++|++++|.+++. +
T Consensus 68 ~~L~~L~Ls~-------------n~l~~~~~--~~~l~~L~~L~l~~-n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~ 128 (466)
T 1o6v_A 68 NNLTQINFSN-------------NQLTDITP--LKNLTKLVDILMNN-NQIADITP--LANLTNLTGLTLFNNQITDI-D 128 (466)
T ss_dssp TTCCEEECCS-------------SCCCCCGG--GTTCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCCC-G
T ss_pred cCCCEEECCC-------------CccCCchh--hhccccCCEEECCC-CccccChh--hcCCCCCCEEECCCCCCCCC-h
Confidence 3567777776 44444322 55666666666652 44443322 55566666666666655533 2
Q ss_pred ccccCCCCCCEEEcccCCCCCCCc--------------------hhhhcCCCCCEEEccCCcCCCccCccCCCCCccchh
Q 017912 146 DDIGNLQKLTVLNLADNAVSGEIP--------------------SSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRA 205 (364)
Q Consensus 146 ~~~~~l~~L~~L~L~~n~l~~~~p--------------------~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 205 (364)
. +.++++|++|++++|.+.+ ++ ..+.++++|++|++++|.+.+. ..+..+++|++|
T Consensus 129 ~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 204 (466)
T 1o6v_A 129 P-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESL 204 (466)
T ss_dssp G-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred H-HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEE
Confidence 1 4555555555555554442 11 1133444555555555554421 124444455555
Q ss_pred hcCCcccccccc--------------------ccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccc
Q 017912 206 LLRGNKLTGSIP--------------------DSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIP 265 (364)
Q Consensus 206 ~l~~n~~~~~~~--------------------~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 265 (364)
++++|.+.+..+ ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+
T Consensus 205 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 282 (466)
T 1o6v_A 205 IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282 (466)
T ss_dssp ECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG
T ss_pred EecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc
Confidence 555554443322 123344444444444444443322 4445555555555555543222
Q ss_pred hhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCCCCCCCC
Q 017912 266 STLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHL 345 (364)
Q Consensus 266 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~l 345 (364)
+..+++|++|++++|++++..+ +..+++|+.|++++|++++..| +..+++|+.|++++|++++. +....+++|
T Consensus 283 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L 355 (466)
T 1o6v_A 283 --LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNI 355 (466)
T ss_dssp --GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTC
T ss_pred --ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCC
Confidence 4445555555555555554332 4555556666666666554433 45556666666666665543 344556666
Q ss_pred CcccccCCCCC
Q 017912 346 EASSFDSNDCL 356 (364)
Q Consensus 346 ~~l~l~~n~~~ 356 (364)
+.+++++|+..
T Consensus 356 ~~L~l~~n~l~ 366 (466)
T 1o6v_A 356 NWLSAGHNQIS 366 (466)
T ss_dssp CEEECCSSCCC
T ss_pred CEEeCCCCccC
Confidence 66666666543
No 55
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=4.1e-27 Score=224.47 Aligned_cols=249 Identities=22% Similarity=0.244 Sum_probs=180.0
Q ss_pred CceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcC
Q 017912 66 RRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIP 145 (364)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 145 (364)
.+++.+++++ +.+++. | .+..+++|++|++++ +.+++. | ++.+++|++|++++|.+++. +
T Consensus 42 ~~L~~L~Ls~-------------n~l~~~-~-~l~~l~~L~~L~Ls~-n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 42 ATLTSLDCHN-------------SSITDM-T-GIEKLTGLTKLICTS-NNITTL-D--LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp TTCCEEECCS-------------SCCCCC-T-TGGGCTTCSEEECCS-SCCSCC-C--CTTCTTCSEEECCSSCCSCC-C
T ss_pred CCCCEEEccC-------------CCcccC-h-hhcccCCCCEEEccC-CcCCeE-c--cccCCCCCEEECcCCCCcee-e
Confidence 3678888887 777764 3 688888888888884 777763 3 78888888888888888853 3
Q ss_pred ccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCC
Q 017912 146 DDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYR 225 (364)
Q Consensus 146 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 225 (364)
++++++|++|++++|.+++ ++ +..+++|++|++++|.+++. .++.+++|++|++++|+..+.+ .+..+++
T Consensus 102 --~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred --cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence 7788888888888888885 44 77888888888888888753 2777788888888888655555 3667778
Q ss_pred CcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccC
Q 017912 226 LADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSY 305 (364)
Q Consensus 226 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 305 (364)
|++|++++|.+++ +| ++.+++|++|++++|.+++. .+..+++|++|++++|++++ +| +..+++|+.|++++
T Consensus 172 L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 172 LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 8888888888775 33 66777888888888887753 26667778888888888876 44 66777888888888
Q ss_pred CcCCCCcchhcccCC-------CCCeEEccCCcCcccCCCCCCCCCCCcccccCCC
Q 017912 306 NNLKGPIPGSLSSSA-------YIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSND 354 (364)
Q Consensus 306 n~l~~~~~~~l~~l~-------~L~~L~l~~N~l~g~ip~~~~~~~l~~l~l~~n~ 354 (364)
|++++..+..+..+. +|+.|++++|.+.|.+|. ..+++|+.+++++|+
T Consensus 243 N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~-~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 243 NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA-EGCRKIKELDVTHNT 297 (457)
T ss_dssp SCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC-TTCTTCCCCCCTTCT
T ss_pred CcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc-cccccCCEEECCCCc
Confidence 887765444444333 445556666666666663 455666666666665
No 56
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=7.9e-27 Score=223.44 Aligned_cols=217 Identities=25% Similarity=0.354 Sum_probs=172.8
Q ss_pred cCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccc
Q 017912 124 ITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLS 203 (364)
Q Consensus 124 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 203 (364)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 246 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLT 246 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCC
Confidence 34445555555555555532 235566666666666666664333 55667777777777776632 3577888999
Q ss_pred hhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCC
Q 017912 204 RALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNA 283 (364)
Q Consensus 204 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 283 (364)
+|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|+
T Consensus 247 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSC
T ss_pred EEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCc
Confidence 99999999986554 8899999999999999986654 8899999999999999986544 7889999999999999
Q ss_pred CccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCCCCCCCCCcccccCCCCCC
Q 017912 284 LGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLC 357 (364)
Q Consensus 284 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~l~~l~l~~n~~~c 357 (364)
+++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| ...+++|+.+++.+|++..
T Consensus 321 l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 321 ISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 998766 78899999999999999865 468899999999999999999888 6889999999999998766
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=8.4e-29 Score=238.04 Aligned_cols=247 Identities=23% Similarity=0.216 Sum_probs=209.4
Q ss_pred cCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCC
Q 017912 100 CQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLK 179 (364)
Q Consensus 100 ~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 179 (364)
..+++|++|++++ +.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++ ++ ..++|+
T Consensus 31 ~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIE 102 (487)
T ss_dssp TTGGGCCEEECCS-SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCC
T ss_pred ccCCCccEEEeeC-CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcC
Confidence 3445899999994 88998888899999999999999999986555 8899999999999999884 33 238999
Q ss_pred EEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhh-CCCCCCEEEccCC
Q 017912 180 HLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILG-KMLVLSTLNLDSN 258 (364)
Q Consensus 180 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n 258 (364)
+|++++|.+++..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 999999999866544 457899999999999988888899999999999999999988888876 7899999999999
Q ss_pred cCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCc-ccCC
Q 017912 259 LLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLC-GPIP 337 (364)
Q Consensus 259 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~-g~ip 337 (364)
.+++. +. ...+++|++|++++|++++..|. +..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|
T Consensus 180 ~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 180 FIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CCCEE-EC-CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred ccccc-cc-cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 99865 32 33589999999999999976554 8889999999999999984 7888999999999999999998 5554
Q ss_pred C-CCCCCCCCccccc-------CCCCCCCCCC
Q 017912 338 V-GSPFDHLEASSFD-------SNDCLCGNPL 361 (364)
Q Consensus 338 ~-~~~~~~l~~l~l~-------~n~~~c~~~~ 361 (364)
. ...++.++.+++. .+++.|.|+.
T Consensus 256 ~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred HHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 3 2456677777776 8899998763
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=2.6e-27 Score=211.12 Aligned_cols=218 Identities=23% Similarity=0.234 Sum_probs=185.2
Q ss_pred cCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCC
Q 017912 119 QLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGN 198 (364)
Q Consensus 119 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 198 (364)
.+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 4555443 57999999999999766668999999999999999999666678889999999999999998777788999
Q ss_pred CCccchhhcCCccccccccccccCCCCCcEEEcccCccccc-cchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCC--
Q 017912 199 LKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGP-IPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMG-- 275 (364)
Q Consensus 199 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~-- 275 (364)
+++|++|++++|.+.+..+..+.++++|++|++++|.+++. +|..++.+++|++|++++|.+++..+..+..+++|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 99999999999999977776789999999999999999863 588899999999999999999877666776666666
Q ss_pred --EEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCC
Q 017912 276 --ILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVG 339 (364)
Q Consensus 276 --~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~ 339 (364)
+|++++|++++..+..+.. .+|+.|++++|++++..+..+..+++|+.|++++|++.+..|..
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred ceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 8999999998766655544 48999999999998766666788999999999999998776643
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.5e-28 Score=222.21 Aligned_cols=250 Identities=22% Similarity=0.189 Sum_probs=201.3
Q ss_pred CCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCC
Q 017912 89 GYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEI 168 (364)
Q Consensus 89 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 168 (364)
+.+...+...+..+++|++|++++ +.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ +
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l 95 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-L 95 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTT-SCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-E
T ss_pred cchhhhHHHHhccCCCCCEEECcC-CccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-c
Confidence 445444445556778999999994 88888777889999999999999999985544 8899999999999998873 3
Q ss_pred chhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhh-hCC
Q 017912 169 PSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDIL-GKM 247 (364)
Q Consensus 169 p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l 247 (364)
+ ..++|++|++++|.+++..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+ ..+
T Consensus 96 ~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 168 (317)
T 3o53_A 96 L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168 (317)
T ss_dssp E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhcc
Confidence 3 348999999999999865443 35789999999999998777788889999999999999987777766 478
Q ss_pred CCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEc
Q 017912 248 LVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDL 327 (364)
Q Consensus 248 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 327 (364)
++|++|++++|.+++. +. ...+++|++|++++|++++..+ .+..+++|++|++++|+++ .+|..+..+++|+.|++
T Consensus 169 ~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244 (317)
T ss_dssp TTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred CcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEc
Confidence 9999999999999854 33 3347899999999999986544 4888899999999999998 57888888999999999
Q ss_pred cCCcCc-ccCCCC-CCCCCCCcccccCC
Q 017912 328 SHNHLC-GPIPVG-SPFDHLEASSFDSN 353 (364)
Q Consensus 328 ~~N~l~-g~ip~~-~~~~~l~~l~l~~n 353 (364)
++|++. +.+|.. ..+++++.+++.++
T Consensus 245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCCccCcCHHHHHhccccceEEECCCc
Confidence 999998 554432 45667777777743
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=4.7e-29 Score=226.99 Aligned_cols=244 Identities=21% Similarity=0.202 Sum_probs=166.7
Q ss_pred ceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCc
Q 017912 67 RVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPD 146 (364)
Q Consensus 67 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~ 146 (364)
+++.+++++ +.+++..|..+.++++|++|+++ .|.+++..+ +..+++|++|++++|.+++
T Consensus 35 ~L~~L~L~~-------------n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~---- 94 (317)
T 3o53_A 35 NVKELDLSG-------------NPLSQISAADLAPFTKLELLNLS-SNVLYETLD--LESLSTLRTLDLNNNYVQE---- 94 (317)
T ss_dssp GCSEEECTT-------------SCCCCCCHHHHTTCTTCCEEECT-TSCCEEEEE--ETTCTTCCEEECCSSEEEE----
T ss_pred CCCEEECcC-------------CccCcCCHHHhhCCCcCCEEECC-CCcCCcchh--hhhcCCCCEEECcCCcccc----
Confidence 456666666 66776666677777777777777 366665443 7777777777777777763
Q ss_pred cccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccc-cCCCC
Q 017912 147 DIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSI-GNMYR 225 (364)
Q Consensus 147 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~ 225 (364)
+...++|++|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++
T Consensus 95 -l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 95 -LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (317)
T ss_dssp -EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred -ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence 22337777777777777743332 35677777777777776666667777777777777777776555555 35677
Q ss_pred CcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccC
Q 017912 226 LADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSY 305 (364)
Q Consensus 226 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 305 (364)
|++|++++|.+++. + ....+++|++|++++|.+++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++
T Consensus 171 L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 171 LEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp CCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTT
T ss_pred CCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccC
Confidence 77777777777644 2 22346777777777777774 4445667777777777777777 3566677777777777777
Q ss_pred CcCC-CCcchhcccCCCCCeEEccCC-cCcccCCC
Q 017912 306 NNLK-GPIPGSLSSSAYIGHLDLSHN-HLCGPIPV 338 (364)
Q Consensus 306 n~l~-~~~~~~l~~l~~L~~L~l~~N-~l~g~ip~ 338 (364)
|.+. +.++.++..+++|+.++++++ .+.|..|.
T Consensus 247 N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 7777 566677777777777777733 45555554
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=1.6e-26 Score=205.45 Aligned_cols=184 Identities=26% Similarity=0.265 Sum_probs=123.2
Q ss_pred CCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhc
Q 017912 128 ASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALL 207 (364)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 207 (364)
+++++|++++|.+++..+..|.++++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 35666666666666444445666666666666666666333333455666666666666666444445566666666666
Q ss_pred CCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccc
Q 017912 208 RGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGN 287 (364)
Q Consensus 208 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 287 (364)
++|++++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 66666655555666777777777777777755555567777788888888777765555677777888888888888766
Q ss_pred cCccccCCCCCCEEEccCCcCCCC
Q 017912 288 IPDVFGSKSYFMALDLSYNNLKGP 311 (364)
Q Consensus 288 ~~~~l~~~~~L~~L~l~~n~l~~~ 311 (364)
.+..+..+++|+.|++++|.+...
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CHHHhccccCCCEEEecCCCeeCC
Confidence 666677788888888888877653
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1e-27 Score=230.57 Aligned_cols=223 Identities=24% Similarity=0.177 Sum_probs=195.0
Q ss_pred cCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccc
Q 017912 124 ITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLS 203 (364)
Q Consensus 124 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 203 (364)
...+++|++|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++. + ..++|+
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~ 102 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIE 102 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCC
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcC
Confidence 3445589999999999998888899999999999999999986555 88999999999999998743 2 238999
Q ss_pred hhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhh-CCCCCCEEEcccC
Q 017912 204 RALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLL-SNTGMGILNLSRN 282 (364)
Q Consensus 204 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n 282 (364)
+|++++|.+++..+. .+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 999999999976554 457899999999999998888999999999999999999988887776 7899999999999
Q ss_pred CCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCCCCCCCCCcccccCCCCCCCC
Q 017912 283 ALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGN 359 (364)
Q Consensus 283 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~l~~l~l~~n~~~c~~ 359 (364)
.+++..+ ...+++|+.|++++|.+++ +|..+..+++|+.|++++|.+++..+....+++|+.+++++|++.|++
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred ccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence 9997743 3468999999999999996 555688999999999999999985555677899999999999999864
No 63
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=3.1e-26 Score=218.35 Aligned_cols=252 Identities=21% Similarity=0.184 Sum_probs=156.8
Q ss_pred CceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcC
Q 017912 66 RRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIP 145 (364)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 145 (364)
.+++.+++++ +.+++. + ++.+++|++|++++ |.+++. + ++.+++|++|++++|.+++ ++
T Consensus 64 ~~L~~L~Ls~-------------n~l~~~-~--~~~l~~L~~L~Ls~-N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~ 122 (457)
T 3bz5_A 64 TGLTKLICTS-------------NNITTL-D--LSQNTNLTYLACDS-NKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD 122 (457)
T ss_dssp TTCSEEECCS-------------SCCSCC-C--CTTCTTCSEEECCS-SCCSCC-C--CTTCTTCCEEECCSSCCSC-CC
T ss_pred CCCCEEEccC-------------CcCCeE-c--cccCCCCCEEECcC-CCCcee-e--cCCCCcCCEEECCCCcCCe-ec
Confidence 4677888887 666663 2 67777777777773 666653 3 6777777777777777775 33
Q ss_pred ccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCC
Q 017912 146 DDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYR 225 (364)
Q Consensus 146 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 225 (364)
++.+++|++|++++|++++ ++ +.++++|++|++++|...+.+ .+..+++|++|++++|++++ +| +..+++
T Consensus 123 --~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~ 192 (457)
T 3bz5_A 123 --VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKL 192 (457)
T ss_dssp --CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTT
T ss_pred --CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCC
Confidence 6677777777777777774 32 556666666666666544343 35556666666666666654 33 555556
Q ss_pred CcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccc-------------
Q 017912 226 LADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVF------------- 292 (364)
Q Consensus 226 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l------------- 292 (364)
|++|++++|.+++. .++.+++|++|++++|.+++ +| +..+++|++|++++|++++..+..+
T Consensus 193 L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L 266 (457)
T 3bz5_A 193 LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDL 266 (457)
T ss_dssp CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCC
T ss_pred CCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCC
Confidence 66666666655543 24555556666666665554 33 4455555555555555554332222
Q ss_pred ----------------cCCCCCCEEEccCCcCCCCcch--------hcccCCCCCeEEccCCcCcccCCCCCCCCCCCcc
Q 017912 293 ----------------GSKSYFMALDLSYNNLKGPIPG--------SLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEAS 348 (364)
Q Consensus 293 ----------------~~~~~L~~L~l~~n~l~~~~~~--------~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~l~~l 348 (364)
+.+++|+.|++++|...+.+|. .+..+++|+.|++++|+++| ++ ...+++|+.+
T Consensus 267 ~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~-l~~l~~L~~L 344 (457)
T 3bz5_A 267 LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD-VSHNTKLKSL 344 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC-CTTCTTCSEE
T ss_pred CEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc-cccCCcCcEE
Confidence 3445666666666665554443 24455677788888888877 34 5677788888
Q ss_pred cccCCCCC
Q 017912 349 SFDSNDCL 356 (364)
Q Consensus 349 ~l~~n~~~ 356 (364)
++++|...
T Consensus 345 ~l~~N~l~ 352 (457)
T 3bz5_A 345 SCVNAHIQ 352 (457)
T ss_dssp ECCSSCCC
T ss_pred ECCCCCCC
Confidence 88888754
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=1.6e-26 Score=205.99 Aligned_cols=208 Identities=21% Similarity=0.224 Sum_probs=176.5
Q ss_pred CCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEE
Q 017912 103 DTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLD 182 (364)
Q Consensus 103 ~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 182 (364)
+++++|+++ .+.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|+
T Consensus 28 ~~l~~L~ls-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECT-TCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECC-CCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 479999999 4888877777889999999999999999876667889999999999999999877777888999999999
Q ss_pred ccCCcCCCccCccCCCCCccchhhcCCccccc-cccccccCCCCCcEEEcccCccccccchhhhCCCCCC----EEEccC
Q 017912 183 LSNNQLSGKIPADFGNLKMLSRALLRGNKLTG-SIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLS----TLNLDS 257 (364)
Q Consensus 183 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~l~~ 257 (364)
+++|.+.+..+..+..+++|++|++++|.+++ .+|..+.++++|++|++++|.+++..+..+..+.+|+ +|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 99999987666678999999999999999986 3688899999999999999999877777776666666 899999
Q ss_pred CcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCc
Q 017912 258 NLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPI 312 (364)
Q Consensus 258 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 312 (364)
|.+++..+..+ ...+|++|++++|++++..+..+..+++|+.|++++|.+++..
T Consensus 187 n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 187 NPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp SCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 99985444443 4458999999999999777777888999999999999998654
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=4.5e-26 Score=202.50 Aligned_cols=203 Identities=26% Similarity=0.279 Sum_probs=143.6
Q ss_pred CCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcC
Q 017912 129 SLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLR 208 (364)
Q Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 208 (364)
..++++++++.++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.++...+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4678999999988 5676554 678999999999886656678888899999999988875544556777888888888
Q ss_pred CccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCcccc
Q 017912 209 GNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNI 288 (364)
Q Consensus 209 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 288 (364)
+|++++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 88777555556667777777777777777666666666777777777777766544444566666777777777666655
Q ss_pred CccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcc
Q 017912 289 PDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCG 334 (364)
Q Consensus 289 ~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g 334 (364)
+..+..+++|++|++++|++++..+..+..+++|+.|++++|++..
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 5556666666666666666665444455566666666666666543
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=1.8e-26 Score=207.09 Aligned_cols=203 Identities=24% Similarity=0.254 Sum_probs=130.0
Q ss_pred cCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccc
Q 017912 124 ITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLS 203 (364)
Q Consensus 124 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 203 (364)
+.+++++++++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++. +. .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCC
Confidence 566778888888888887 5665554 6788888888888866677788888888888888887743 22 25666777
Q ss_pred hhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCC
Q 017912 204 RALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNA 283 (364)
Q Consensus 204 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 283 (364)
+|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 7777777666 455556666666666666666665555555666666666666666654444445555566666666666
Q ss_pred CccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCc
Q 017912 284 LGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLC 333 (364)
Q Consensus 284 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~ 333 (364)
+++..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|++.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 65444444555556666666666555 44555555555555555555543
No 67
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=5.2e-26 Score=225.33 Aligned_cols=135 Identities=20% Similarity=0.225 Sum_probs=119.5
Q ss_pred CceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcC
Q 017912 66 RRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIP 145 (364)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 145 (364)
..++.|++++ |.+++..+.+|.++++|++|+++ .|.+++..+..|.++++|++|+|++|++++..+
T Consensus 52 ~~~~~LdLs~-------------N~i~~l~~~~f~~l~~L~~L~Ls-~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 52 FSTKNLDLSF-------------NPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp TTCCEEECTT-------------SCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred cCCCEEEeeC-------------CCCCCCCHHHHhCCCCCCEEECC-CCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 3688899998 99998888899999999999999 588988778889999999999999999996666
Q ss_pred ccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCC-ccCccCCCCCccchhhcCCccccc
Q 017912 146 DDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSG-KIPADFGNLKMLSRALLRGNKLTG 214 (364)
Q Consensus 146 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~ 214 (364)
..|.++++|++|++++|++++..+..++++++|++|++++|.+++ ..|..++.+++|++|++++|++++
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 779999999999999999996666678999999999999999975 467788899999999998887654
No 68
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.93 E-value=3.5e-27 Score=216.11 Aligned_cols=266 Identities=17% Similarity=0.189 Sum_probs=214.7
Q ss_pred CCCCCccceEecCCCCceEEEEcCCCCCchhhhhcCCCCCcccccCccccCC--CCCCEEecCCCCCCcccCccccCCCC
Q 017912 51 NCCTNWYGVSCDPTTRRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQL--DTLSTLVIADWKGISGQLPSCITSIA 128 (364)
Q Consensus 51 ~~c~~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~p~~l~~l~ 128 (364)
-.|..|.++.|++ ..++.+++++ +.+. +..+..+ +.++.+++++ +.+.+..+. +..++
T Consensus 34 ~vc~~W~~~~~~~--~~~~~l~l~~-------------~~~~---~~~~~~~~~~~l~~L~l~~-n~l~~~~~~-~~~~~ 93 (336)
T 2ast_B 34 GVCKRWYRLASDE--SLWQTLDLTG-------------KNLH---PDVTGRLLSQGVIAFRCPR-SFMDQPLAE-HFSPF 93 (336)
T ss_dssp SSCHHHHHHHTCS--TTSSEEECTT-------------CBCC---HHHHHHHHHTTCSEEECTT-CEECSCCCS-CCCCB
T ss_pred HHHHHHHHHhcCc--hhheeecccc-------------ccCC---HHHHHhhhhccceEEEcCC-ccccccchh-hccCC
Confidence 3465699998874 3577889887 5444 3445666 8899999994 777776655 66799
Q ss_pred CCCEEEccCCcCCCC-cCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCC-cCCCc-cCccCCCCCccchh
Q 017912 129 SLRVLDLVGNKLSGK-IPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNN-QLSGK-IPADFGNLKMLSRA 205 (364)
Q Consensus 129 ~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L 205 (364)
+|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 999999999999865 7788899999999999999999888888999999999999999 67653 66668889999999
Q ss_pred hcCCc-ccccc-ccccccCCC-CCcEEEcccC--ccc-cccchhhhCCCCCCEEEccCCc-CCcccchhhhCCCCCCEEE
Q 017912 206 LLRGN-KLTGS-IPDSIGNMY-RLADLDLSMN--QIS-GPIPDILGKMLVLSTLNLDSNL-LSGKIPSTLLSNTGMGILN 278 (364)
Q Consensus 206 ~l~~n-~~~~~-~~~~l~~l~-~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~ 278 (364)
++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|+
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 99999 88764 567788899 9999999999 455 4567788899999999999999 7777788889999999999
Q ss_pred cccCC-CccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCC
Q 017912 279 LSRNA-LGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVG 339 (364)
Q Consensus 279 l~~n~-l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~ 339 (364)
+++|. ++......+..+++|++|++++| ++...-..+. .++..|++++|++++..|..
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSS
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCc
Confidence 99995 44333346788999999999999 5543333332 23666679999999988863
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=6e-25 Score=197.20 Aligned_cols=205 Identities=23% Similarity=0.207 Sum_probs=180.7
Q ss_pred cccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCC
Q 017912 98 AICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSS 177 (364)
Q Consensus 98 ~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 177 (364)
.+.++++++++++++ +.++ .+|..+. +.+++|++++|.+++..+..+.++++|++|++++|.+++ ++.. ..+++
T Consensus 5 ~~~~l~~l~~l~~~~-~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDK-RNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTT-SCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTT
T ss_pred cccccCCccEEECCC-CCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCc
Confidence 467889999999994 7776 5666554 689999999999998888899999999999999999984 4443 78899
Q ss_pred CCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccC
Q 017912 178 LKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDS 257 (364)
Q Consensus 178 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 257 (364)
|++|++++|.++ .+|..+..+++|++|++++|++++..+..+.++++|++|++++|++++..+..+..+++|+.|++++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 999999999998 7888899999999999999999977778899999999999999999987777888999999999999
Q ss_pred CcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCC
Q 017912 258 NLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKG 310 (364)
Q Consensus 258 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 310 (364)
|.+++..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|.+..
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 9999655566788999999999999999 667777788899999999999875
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=2.1e-25 Score=198.39 Aligned_cols=204 Identities=23% Similarity=0.215 Sum_probs=147.1
Q ss_pred cCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccc
Q 017912 124 ITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLS 203 (364)
Q Consensus 124 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 203 (364)
+..+++|++|++++|.++. + ..+..+++|++|++++|.+++ + +.+..+++|++|++++|.+++..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3455667777777776652 2 246667777777777777664 2 3566677777777777777655555567777777
Q ss_pred hhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCC
Q 017912 204 RALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNA 283 (364)
Q Consensus 204 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 283 (364)
+|++++|++++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 77777777776655666777778888888887776666667777888888888888876666666777888888888888
Q ss_pred CccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCC
Q 017912 284 LGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV 338 (364)
Q Consensus 284 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~ 338 (364)
+++..+..+..+++|+.|++++|.+.+. +++|+.++++.|+++|.+|.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence 8877777778888888888888877643 45677888888888888886
No 71
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=6.7e-26 Score=215.89 Aligned_cols=248 Identities=20% Similarity=0.254 Sum_probs=138.2
Q ss_pred ceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCC-------------CEE
Q 017912 67 RVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASL-------------RVL 133 (364)
Q Consensus 67 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L-------------~~L 133 (364)
+++.+++++ +.+ |.+|+.++++++|++|+++ ++.+.|.+|..++++++| ++|
T Consensus 12 ~L~~L~l~~-------------n~l-~~iP~~i~~L~~L~~L~l~-~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L 76 (454)
T 1jl5_A 12 FLQEPLRHS-------------SNL-TEMPVEAENVKSKTEYYNA-WSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL 76 (454)
T ss_dssp ------------------------------------CCHHHHHHH-HHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEE
T ss_pred cchhhhccc-------------Cch-hhCChhHhcccchhhhhcc-CCcccccCCcccccchhcchhhhhhhhccCCCEE
Confidence 566666665 555 5666666666666666666 355555666555555432 555
Q ss_pred EccCCcCCCC-------------------cCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCc
Q 017912 134 DLVGNKLSGK-------------------IPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPA 194 (364)
Q Consensus 134 ~l~~n~l~~~-------------------~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~ 194 (364)
++++|.+++. +|.. .++|++|++++|.+++ ++.. .++|++|++++|.+++ +|
T Consensus 77 ~l~~~~l~~lp~~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp- 147 (454)
T 1jl5_A 77 ELNNLGLSSLPELPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP- 147 (454)
T ss_dssp ECTTSCCSCCCSCCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-
T ss_pred EecCCccccCCCCcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-
Confidence 5555554421 3321 2455555555555542 2211 1467777777777664 55
Q ss_pred cCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCC
Q 017912 195 DFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGM 274 (364)
Q Consensus 195 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 274 (364)
.++.+++|++|++++|++++ +|..+ .+|++|++++|.+++ +| .++.+++|++|++++|.+++ +|... ++|
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L 217 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSL 217 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTC
T ss_pred ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---Ccc
Confidence 46777777777777777664 44432 467777777777765 44 46677777777777777764 33322 467
Q ss_pred CEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCCCCCCCCCcccccCCC
Q 017912 275 GILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSND 354 (364)
Q Consensus 275 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~l~~l~l~~n~ 354 (364)
++|++++|+++ .+|. ++.+++|++|++++|++++ +|.. .++|+.|++++|++++ +|. .+++|+.+++++|.
T Consensus 218 ~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~--~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 218 ESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPE--LPQSLTFLDVSENI 288 (454)
T ss_dssp CEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSC
T ss_pred cEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCc--ccCcCCEEECcCCc
Confidence 77777777777 4553 6777888888888888774 4432 3677888888887775 554 34677777777776
Q ss_pred CCC
Q 017912 355 CLC 357 (364)
Q Consensus 355 ~~c 357 (364)
...
T Consensus 289 l~~ 291 (454)
T 1jl5_A 289 FSG 291 (454)
T ss_dssp CSE
T ss_pred cCc
Confidence 543
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.7e-25 Score=219.79 Aligned_cols=262 Identities=23% Similarity=0.289 Sum_probs=144.0
Q ss_pred CCCCCC-CCCCCCCccceEe------cCCCCceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCC
Q 017912 43 IFASWT-GDNCCTNWYGVSC------DPTTRRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKG 115 (364)
Q Consensus 43 ~~~~W~-~~~~c~~w~gv~c------~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 115 (364)
.|..|. ..++|. |.|..| ......++.+++++ +.++ .+|..+. ++|++|++++ |.
T Consensus 11 ~w~~W~~~~~~~~-~~~r~~~~~~~~~c~~~~l~~L~ls~-------------n~L~-~lp~~l~--~~L~~L~L~~-N~ 72 (622)
T 3g06_A 11 VWSAWRRAAPAEE-SRGRAAVVQKMRACLNNGNAVLNVGE-------------SGLT-TLPDCLP--AHITTLVIPD-NN 72 (622)
T ss_dssp HHHHHHHTCCGGG-HHHHHHHHHHHHHHHHHCCCEEECCS-------------SCCS-CCCSCCC--TTCSEEEECS-CC
T ss_pred HHHHHHhcCCcch-hccccccCcccccccCCCCcEEEecC-------------CCcC-ccChhhC--CCCcEEEecC-CC
Confidence 455676 456665 866422 11123577888887 5555 4555444 5677777763 55
Q ss_pred CcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCcc
Q 017912 116 ISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPAD 195 (364)
Q Consensus 116 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~ 195 (364)
++ .+|. .+++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++++|.++. +|..
T Consensus 73 l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~-lp~~ 139 (622)
T 3g06_A 73 LT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTS-LPVL 139 (622)
T ss_dssp CS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSC-CCCC
T ss_pred CC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCc-CCCC
Confidence 55 3444 4566777777777666 3443 4566666666666666 2333 34555556655555542 3332
Q ss_pred CCCCCccchhhcCCccccccccccc-----------------cCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCC
Q 017912 196 FGNLKMLSRALLRGNKLTGSIPDSI-----------------GNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSN 258 (364)
Q Consensus 196 ~~~l~~L~~L~l~~n~~~~~~~~~l-----------------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 258 (364)
+++|++|++++|++++ +|..+ ..+++|++|++++|.+++ +|. ..++|+.|++++|
T Consensus 140 ---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N 211 (622)
T 3g06_A 140 ---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNN 211 (622)
T ss_dssp ---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred ---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCC
Confidence 2455555555555542 22211 122556666666666553 222 2345555555555
Q ss_pred cCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCC
Q 017912 259 LLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV 338 (364)
Q Consensus 259 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~ 338 (364)
.++ .+|. .+++|++|++++|++++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|.
T Consensus 212 ~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~ 278 (622)
T 3g06_A 212 RLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPE 278 (622)
T ss_dssp CCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred ccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCH
Confidence 554 2332 12566667777776664 33 34466677777777666 3444 4566777777777766 3443
Q ss_pred -CCCCCCCCcccccCCCCC
Q 017912 339 -GSPFDHLEASSFDSNDCL 356 (364)
Q Consensus 339 -~~~~~~l~~l~l~~n~~~ 356 (364)
...+++|+.+++++|+..
T Consensus 279 ~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 279 SLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp GGGGSCTTCEEECCSCCCC
T ss_pred HHhhccccCEEEecCCCCC
Confidence 345666667777777653
No 73
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=2e-24 Score=205.67 Aligned_cols=238 Identities=24% Similarity=0.374 Sum_probs=121.8
Q ss_pred CCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCC
Q 017912 89 GYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEI 168 (364)
Q Consensus 89 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 168 (364)
|.+++ +| .++++++|++|++++ |.+++ +|..+ .+|++|++++|.+++ +| .++++++|++|++++|.+++ +
T Consensus 141 n~l~~-lp-~~~~l~~L~~L~l~~-N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l 210 (454)
T 1jl5_A 141 NQLEK-LP-ELQNSSFLKIIDVDN-NSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-L 210 (454)
T ss_dssp SCCSS-CC-CCTTCTTCCEEECCS-SCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-C
T ss_pred CCCCC-Cc-ccCCCCCCCEEECCC-CcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-C
Confidence 44554 44 466666666666663 55553 44322 366666666666664 44 46666666666666666663 3
Q ss_pred chhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCC
Q 017912 169 PSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKML 248 (364)
Q Consensus 169 p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 248 (364)
|.. .++|++|++++|.++ .+| .++.+++|++|++++|++++ +|.. +++|++|++++|.+++ +|.. .+
T Consensus 211 ~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~ 277 (454)
T 1jl5_A 211 PDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQ 277 (454)
T ss_dssp CCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CT
T ss_pred CCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cC
Confidence 332 136666666666665 455 36666777777777776663 3332 2455556666555553 2221 24
Q ss_pred CCCEEEccCCcCCc--ccchhh-------------hCC-CCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCc
Q 017912 249 VLSTLNLDSNLLSG--KIPSTL-------------LSN-TGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPI 312 (364)
Q Consensus 249 ~L~~L~l~~n~l~~--~~~~~~-------------~~~-~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 312 (364)
+|++|++++|.+++ .+|..+ ..+ ++|++|++++|++++ +|.. +++|++|++++|+++ .+
T Consensus 278 ~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~l 352 (454)
T 1jl5_A 278 SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EV 352 (454)
T ss_dssp TCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CC
T ss_pred cCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cc
Confidence 45555555555543 111111 011 356666666666654 3332 356667777777666 34
Q ss_pred chhcccCCCCCeEEccCCcCcc--cCCCC-CCC-------------CCCCcccccCCCCCC
Q 017912 313 PGSLSSSAYIGHLDLSHNHLCG--PIPVG-SPF-------------DHLEASSFDSNDCLC 357 (364)
Q Consensus 313 ~~~l~~l~~L~~L~l~~N~l~g--~ip~~-~~~-------------~~l~~l~l~~n~~~c 357 (364)
|. .+++|++|++++|++++ .+|.. ..+ ++|+.+++++|+...
T Consensus 353 p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 353 PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 44 35667777777777766 45532 222 556677777776654
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=5.3e-25 Score=195.79 Aligned_cols=212 Identities=25% Similarity=0.268 Sum_probs=185.1
Q ss_pred cccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCC
Q 017912 98 AICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSS 177 (364)
Q Consensus 98 ~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 177 (364)
....+++|+.|++++ +.+.. + +.+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+.++++
T Consensus 36 ~~~~l~~L~~L~l~~-~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 36 TQNELNSIDQIIANN-SDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp CHHHHTTCCEEECTT-SCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred ccccccceeeeeeCC-CCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 456788999999984 66552 3 348889999999999999985 3 47889999999999999999777777889999
Q ss_pred CCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccC
Q 017912 178 LKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDS 257 (364)
Q Consensus 178 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 257 (364)
|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..++.+++|++|++++
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence 99999999999977777789999999999999999977777788999999999999999988777789999999999999
Q ss_pred CcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCC
Q 017912 258 NLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAY 321 (364)
Q Consensus 258 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 321 (364)
|.+++..+..+..+++|++|++++|.+.+. ++.++.++++.|.++|.+|.+++.++.
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 999987777788999999999999988743 567899999999999999998876654
No 75
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=1.5e-26 Score=216.23 Aligned_cols=242 Identities=21% Similarity=0.275 Sum_probs=189.9
Q ss_pred cCccccCCCCCCEEecCCCCCCccc----CccccCCCCCCCEEEccCCcC---CCCcCccc-------cCCCCCCEEEcc
Q 017912 95 INPAICQLDTLSTLVIADWKGISGQ----LPSCITSIASLRVLDLVGNKL---SGKIPDDI-------GNLQKLTVLNLA 160 (364)
Q Consensus 95 ~~~~~~~l~~L~~L~l~~~~~l~~~----~p~~l~~l~~L~~L~l~~n~l---~~~~~~~~-------~~l~~L~~L~L~ 160 (364)
++..+..+++|++|++++ +.+++. ++..+..+++|++|++++|.+ ++.+|..+ ..+++|++|+++
T Consensus 24 l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSG-NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSCCCEEECTT-SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCCccEEECCC-CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 566778888999999994 777765 344577899999999998644 44556555 688999999999
Q ss_pred cCCCCC----CCchhhhcCCCCCEEEccCCcCCCccCcc----CCCC---------CccchhhcCCcccc-cccc---cc
Q 017912 161 DNAVSG----EIPSSLVRLSSLKHLDLSNNQLSGKIPAD----FGNL---------KMLSRALLRGNKLT-GSIP---DS 219 (364)
Q Consensus 161 ~n~l~~----~~p~~l~~l~~L~~L~l~~n~~~~~~~~~----~~~l---------~~L~~L~l~~n~~~-~~~~---~~ 219 (364)
+|.+++ .++..+..+++|++|++++|.++...+.. +..+ ++|++|++++|+++ +.++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 999986 46778888999999999999886433333 3333 88999999999887 3444 45
Q ss_pred ccCCCCCcEEEcccCcccc-----ccchhhhCCCCCCEEEccCCcCC----cccchhhhCCCCCCEEEcccCCCccc---
Q 017912 220 IGNMYRLADLDLSMNQISG-----PIPDILGKMLVLSTLNLDSNLLS----GKIPSTLLSNTGMGILNLSRNALGGN--- 287 (364)
Q Consensus 220 l~~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~l~~n~l~~~--- 287 (364)
+..+++|++|++++|.++. ..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 6678899999999998873 23337778899999999999986 56777888889999999999999865
Q ss_pred -cCccc--cCCCCCCEEEccCCcCCC----Ccchhc-ccCCCCCeEEccCCcCcccCC
Q 017912 288 -IPDVF--GSKSYFMALDLSYNNLKG----PIPGSL-SSSAYIGHLDLSHNHLCGPIP 337 (364)
Q Consensus 288 -~~~~l--~~~~~L~~L~l~~n~l~~----~~~~~l-~~l~~L~~L~l~~N~l~g~ip 337 (364)
++..+ +.+++|++|++++|.+++ .+|..+ .++++|+.|++++|++++..+
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 45555 348899999999999987 477777 568999999999999987664
No 76
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=4.1e-27 Score=224.88 Aligned_cols=274 Identities=17% Similarity=0.171 Sum_probs=139.5
Q ss_pred ceEEEEcCCCCCchhhhhcCCCCCccc----ccCccccCCCCCCEEecCCCCCCcccCcccc-----CCCCCCCEEEccC
Q 017912 67 RVTDISLRGESEDPILVKAGRSGYMTG----SINPAICQLDTLSTLVIADWKGISGQLPSCI-----TSIASLRVLDLVG 137 (364)
Q Consensus 67 ~v~~l~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l-----~~l~~L~~L~l~~ 137 (364)
+++.+++++ +.+++ .++..+.++++|++|++++ +.+++..+..+ ...++|++|++++
T Consensus 86 ~L~~L~L~~-------------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 151 (461)
T 1z7x_W 86 KIQKLSLQN-------------CCLTGAGCGVLSSTLRTLPTLQELHLSD-NLLGDAGLQLLCEGLLDPQCRLEKLQLEY 151 (461)
T ss_dssp CCCEEECTT-------------SCCBGGGHHHHHHHTTSCTTCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred ceeEEEccC-------------CCCCHHHHHHHHHHHccCCceeEEECCC-CcCchHHHHHHHHHHhcCCCcceEEECCC
Confidence 466777766 55553 4566677777777777773 55654333222 2245677777777
Q ss_pred CcCCCCc----CccccCCCCCCEEEcccCCCCCCCchhhh-----cCCCCCEEEccCCcCCCc----cCccCCCCCccch
Q 017912 138 NKLSGKI----PDDIGNLQKLTVLNLADNAVSGEIPSSLV-----RLSSLKHLDLSNNQLSGK----IPADFGNLKMLSR 204 (364)
Q Consensus 138 n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~ 204 (364)
|.+++.. +..+..+++|++|++++|.+++..+..+. ..++|++|++++|.++.. ++..+..+++|++
T Consensus 152 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 231 (461)
T 1z7x_W 152 CSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCE
T ss_pred CCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccE
Confidence 7666432 34445566666666666666533333222 244666666666665542 3444455566666
Q ss_pred hhcCCcccccccc-----ccccCCCCCcEEEcccCccccc----cchhhhCCCCCCEEEccCCcCCcccchhhhC-----
Q 017912 205 ALLRGNKLTGSIP-----DSIGNMYRLADLDLSMNQISGP----IPDILGKMLVLSTLNLDSNLLSGKIPSTLLS----- 270 (364)
Q Consensus 205 L~l~~n~~~~~~~-----~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~----- 270 (364)
|++++|.+++... .....+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..
T Consensus 232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 311 (461)
T 1z7x_W 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP 311 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTST
T ss_pred EeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccC
Confidence 6666665543211 1112345566666666655533 3444455555666666665554332222221
Q ss_pred CCCCCEEEcccCCCccc----cCccccCCCCCCEEEccCCcCCCCcchhccc-----CCCCCeEEccCCcCcc----cCC
Q 017912 271 NTGMGILNLSRNALGGN----IPDVFGSKSYFMALDLSYNNLKGPIPGSLSS-----SAYIGHLDLSHNHLCG----PIP 337 (364)
Q Consensus 271 ~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~L~l~~N~l~g----~ip 337 (364)
.++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|++++|++++ .+|
T Consensus 312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 13555555555555433 2333344455555555555554333332221 3455555555555543 232
Q ss_pred C-CCCCCCCCcccccCCC
Q 017912 338 V-GSPFDHLEASSFDSND 354 (364)
Q Consensus 338 ~-~~~~~~l~~l~l~~n~ 354 (364)
. ...+++|+.+++++|+
T Consensus 392 ~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHCCCCCEEECCSSS
T ss_pred HHHHhCCCccEEECCCCC
Confidence 2 1234445555555554
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=6.1e-25 Score=199.14 Aligned_cols=199 Identities=19% Similarity=0.188 Sum_probs=96.5
Q ss_pred CCCCEEEccCCcCCCCcCccc--cCCCCCCEEEcccCCCCCCCc----hhhhcCCCCCEEEccCCcCCCccCccCCCCCc
Q 017912 128 ASLRVLDLVGNKLSGKIPDDI--GNLQKLTVLNLADNAVSGEIP----SSLVRLSSLKHLDLSNNQLSGKIPADFGNLKM 201 (364)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 201 (364)
++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 456666666666666666555 566666666666666664333 22334566666666666665555555555566
Q ss_pred cchhhcCCcccccc--cc--ccccCCCCCcEEEcccCccccccch----hhhCCCCCCEEEccCCcCCcccchhhhCC--
Q 017912 202 LSRALLRGNKLTGS--IP--DSIGNMYRLADLDLSMNQISGPIPD----ILGKMLVLSTLNLDSNLLSGKIPSTLLSN-- 271 (364)
Q Consensus 202 L~~L~l~~n~~~~~--~~--~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-- 271 (364)
|++|++++|++.+. ++ ..+..+++|++|++++|.++ .++. .++.+++|++|++++|.+++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 66666665554431 11 11234445555555555553 1111 12344445555555554444334333333
Q ss_pred -CCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcC
Q 017912 272 -TGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHL 332 (364)
Q Consensus 272 -~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l 332 (364)
++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|++
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTT
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCC
Confidence 34444444444444 2233222 3444444444444421 11 23344444444444444
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=1.2e-25 Score=208.35 Aligned_cols=246 Identities=22% Similarity=0.236 Sum_probs=193.2
Q ss_pred CCcccccCccccCCCCCCEEecCCCCCCcccCc----cccCCCC-CCCEEEccCCcCCCCcCccccCC-----CCCCEEE
Q 017912 89 GYMTGSINPAICQLDTLSTLVIADWKGISGQLP----SCITSIA-SLRVLDLVGNKLSGKIPDDIGNL-----QKLTVLN 158 (364)
Q Consensus 89 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~ 158 (364)
+.++|.+|..+...++|++|+++ .+.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|+
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLS-LNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN 86 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECT-TSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred ccchHHHHHHHhCCCCceEEEcc-CCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE
Confidence 77888888888888889999999 477887666 6778888 89999999999997777777664 9999999
Q ss_pred cccCCCCCCCchhhh----cC-CCCCEEEccCCcCCCccCcc----CCC-CCccchhhcCCccccccc----cccccCCC
Q 017912 159 LADNAVSGEIPSSLV----RL-SSLKHLDLSNNQLSGKIPAD----FGN-LKMLSRALLRGNKLTGSI----PDSIGNMY 224 (364)
Q Consensus 159 L~~n~l~~~~p~~l~----~l-~~L~~L~l~~n~~~~~~~~~----~~~-l~~L~~L~l~~n~~~~~~----~~~l~~l~ 224 (364)
+++|.+++..+..+. .+ ++|++|++++|.+++..+.. +.. .++|++|++++|.+++.. +..+...+
T Consensus 87 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 166 (362)
T 3goz_A 87 LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP 166 (362)
T ss_dssp CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC
T ss_pred CcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC
Confidence 999999877666544 34 89999999999997655443 334 369999999999998543 34445555
Q ss_pred -CCcEEEcccCccccccchhhh----CC-CCCCEEEccCCcCCcc----cchhhhC-CCCCCEEEcccCCCccccC----
Q 017912 225 -RLADLDLSMNQISGPIPDILG----KM-LVLSTLNLDSNLLSGK----IPSTLLS-NTGMGILNLSRNALGGNIP---- 289 (364)
Q Consensus 225 -~L~~L~l~~n~l~~~~~~~l~----~l-~~L~~L~l~~n~l~~~----~~~~~~~-~~~L~~L~l~~n~l~~~~~---- 289 (364)
+|++|++++|.+++..+..+. .. ++|++|++++|.+++. ++..+.. .++|++|++++|++++..+
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence 899999999999877765443 44 5999999999999853 4455555 4599999999999987544
Q ss_pred ccccCCCCCCEEEccCCcCCCCc-------chhcccCCCCCeEEccCCcCccc
Q 017912 290 DVFGSKSYFMALDLSYNNLKGPI-------PGSLSSSAYIGHLDLSHNHLCGP 335 (364)
Q Consensus 290 ~~l~~~~~L~~L~l~~n~l~~~~-------~~~l~~l~~L~~L~l~~N~l~g~ 335 (364)
..+..+++|++|++++|.+.+.. +..+..+++|+.||+++|++.+.
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 34577899999999999955432 33566788899999999998765
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=2.4e-24 Score=195.18 Aligned_cols=224 Identities=21% Similarity=0.199 Sum_probs=184.4
Q ss_pred CCCCEEEccCCcCCCCcCc---cccCCCCCCEEEcccCCCCCCCchhh--hcCCCCCEEEccCCcCCCccC----ccCCC
Q 017912 128 ASLRVLDLVGNKLSGKIPD---DIGNLQKLTVLNLADNAVSGEIPSSL--VRLSSLKHLDLSNNQLSGKIP----ADFGN 198 (364)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~l~~n~~~~~~~----~~~~~ 198 (364)
..++.+.+.++.++...-. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3578888888877532111 12235779999999999998888887 889999999999999987554 34567
Q ss_pred CCccchhhcCCccccccccccccCCCCCcEEEcccCccccc--cc--hhhhCCCCCCEEEccCCcCCcccch----hhhC
Q 017912 199 LKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGP--IP--DILGKMLVLSTLNLDSNLLSGKIPS----TLLS 270 (364)
Q Consensus 199 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~--~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~ 270 (364)
+++|++|++++|++.+..+..+..+++|++|++++|++.+. ++ ..++.+++|++|++++|.++ .++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 99999999999999988888999999999999999998653 22 22367899999999999997 3333 3567
Q ss_pred CCCCCEEEcccCCCccccCccccCC---CCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCCCCCCCCCc
Q 017912 271 NTGMGILNLSRNALGGNIPDVFGSK---SYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEA 347 (364)
Q Consensus 271 ~~~L~~L~l~~n~l~~~~~~~l~~~---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~l~~ 347 (364)
+++|++|++++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |....+++|+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccE
Confidence 8999999999999998878777666 79999999999999 6777664 8999999999999974 44568899999
Q ss_pred ccccCCCCC
Q 017912 348 SSFDSNDCL 356 (364)
Q Consensus 348 l~l~~n~~~ 356 (364)
|++++|++.
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 999999975
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.5e-23 Score=184.22 Aligned_cols=179 Identities=25% Similarity=0.255 Sum_probs=101.5
Q ss_pred CCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcc
Q 017912 105 LSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLS 184 (364)
Q Consensus 105 L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 184 (364)
.++++.++ +.++ .+|..+. +.+++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 16 ~~~l~~~~-~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQG-KSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTT-CCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCC-CCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 44555552 4443 3443333 355555555555555545455555555555555555554444444555555555555
Q ss_pred CCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCccc
Q 017912 185 NNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKI 264 (364)
Q Consensus 185 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 264 (364)
+|.+++ ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 92 ~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 92 NNQLAS------------------------LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp TSCCCC------------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcccc------------------------cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 555543 33334445555555555555555444444556666666666666666444
Q ss_pred chhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCC
Q 017912 265 PSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGP 311 (364)
Q Consensus 265 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 311 (364)
+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+.
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 44566666677777777777666666666677777777777777654
No 81
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=4.5e-26 Score=217.67 Aligned_cols=274 Identities=18% Similarity=0.174 Sum_probs=214.6
Q ss_pred CceEEEEcCCCCCchhhhhcCCCCCcccccCcccc-----CCCCCCEEecCCCCCCccc----CccccCCCCCCCEEEcc
Q 017912 66 RRVTDISLRGESEDPILVKAGRSGYMTGSINPAIC-----QLDTLSTLVIADWKGISGQ----LPSCITSIASLRVLDLV 136 (364)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~l~~~----~p~~l~~l~~L~~L~l~ 136 (364)
.+++.+++++ +.+++..+..+. ..++|++|++++ +.+++. ++..+..+++|++|+++
T Consensus 113 ~~L~~L~Ls~-------------n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 113 PTLQELHLSD-------------NLLGDAGLQLLCEGLLDPQCRLEKLQLEY-CSLSAASCEPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp TTCCEEECCS-------------SBCHHHHHHHHHHHHTSTTCCCCEEECTT-SCCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred CceeEEECCC-------------CcCchHHHHHHHHHHhcCCCcceEEECCC-CCCCHHHHHHHHHHHhhCCCCCEEECc
Confidence 4788999998 767655443332 356899999994 788764 46667778999999999
Q ss_pred CCcCCCCcCcccc-----CCCCCCEEEcccCCCCCC----CchhhhcCCCCCEEEccCCcCCCcc-----CccCCCCCcc
Q 017912 137 GNKLSGKIPDDIG-----NLQKLTVLNLADNAVSGE----IPSSLVRLSSLKHLDLSNNQLSGKI-----PADFGNLKML 202 (364)
Q Consensus 137 ~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L 202 (364)
+|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.... +..+..+++|
T Consensus 179 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L 258 (461)
T 1z7x_W 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258 (461)
T ss_dssp SSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred CCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence 9998755444443 367999999999999864 5777888999999999999986432 2233468999
Q ss_pred chhhcCCcccccc----ccccccCCCCCcEEEcccCccccccchhhhC-----CCCCCEEEccCCcCCcc----cchhhh
Q 017912 203 SRALLRGNKLTGS----IPDSIGNMYRLADLDLSMNQISGPIPDILGK-----MLVLSTLNLDSNLLSGK----IPSTLL 269 (364)
Q Consensus 203 ~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~l~~~----~~~~~~ 269 (364)
++|++++|.++.. ++..+.++++|++|++++|.+++..+..+.. .++|++|++++|.+++. ++..+.
T Consensus 259 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 338 (461)
T 1z7x_W 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338 (461)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh
Confidence 9999999999864 5677778999999999999997665555543 36999999999999865 456677
Q ss_pred CCCCCCEEEcccCCCccccCccccC-----CCCCCEEEccCCcCCC----CcchhcccCCCCCeEEccCCcCccc-----
Q 017912 270 SNTGMGILNLSRNALGGNIPDVFGS-----KSYFMALDLSYNNLKG----PIPGSLSSSAYIGHLDLSHNHLCGP----- 335 (364)
Q Consensus 270 ~~~~L~~L~l~~n~l~~~~~~~l~~-----~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~N~l~g~----- 335 (364)
.+++|++|++++|++++..+..+.. .++|++|++++|.+++ .++..+..+++|++|++++|++++.
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l 418 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 418 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHH
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHH
Confidence 8899999999999998765544432 6899999999999986 7788899999999999999998753
Q ss_pred ---CCCCCCCCCCCcccccCCCC
Q 017912 336 ---IPVGSPFDHLEASSFDSNDC 355 (364)
Q Consensus 336 ---ip~~~~~~~l~~l~l~~n~~ 355 (364)
+|. ...+|+.|.+.++.+
T Consensus 419 ~~~l~~--~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 419 VESVRQ--PGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHHHTS--TTCCCCEEECTTCCC
T ss_pred HHHhcc--CCcchhheeeccccc
Confidence 443 344566666666554
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=2.1e-24 Score=188.14 Aligned_cols=195 Identities=19% Similarity=0.244 Sum_probs=109.0
Q ss_pred CCCEEEccCCcCCCCcCccccCCCCCCEEEcccCC-CCCCCchhhhcCCCCCEEEccC-CcCCCccCccCCCCCccchhh
Q 017912 129 SLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNA-VSGEIPSSLVRLSSLKHLDLSN-NQLSGKIPADFGNLKMLSRAL 206 (364)
Q Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~ 206 (364)
+|++|++++|.+++..+..+.++++|++|++++|. ++...+..+.++++|++|++++ |.++...+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777775555567777777777777775 6644444566777777777776 666644445566666666666
Q ss_pred cCCccccccccccccCCCCCc---EEEcccC-ccccccchhhhCCCCCC-EEEccCCcCCcccchhhhCCCCCCEEEccc
Q 017912 207 LRGNKLTGSIPDSIGNMYRLA---DLDLSMN-QISGPIPDILGKMLVLS-TLNLDSNLLSGKIPSTLLSNTGMGILNLSR 281 (364)
Q Consensus 207 l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 281 (364)
+++|++++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|.++ .+|......++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 66666653 443 45555555 5666665 55544444455555555 5555555555 3332222224455555555
Q ss_pred CC-CccccCccccCC-CCCCEEEccCCcCCCCcchhcccCCCCCeEEccC
Q 017912 282 NA-LGGNIPDVFGSK-SYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSH 329 (364)
Q Consensus 282 n~-l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 329 (364)
|+ +++..+..+..+ ++|+.|++++|++++ +|.. .+++|+.|++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARN 235 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTT
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccC
Confidence 52 544444444444 555555555555542 2222 344444555444
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=2.1e-25 Score=206.67 Aligned_cols=250 Identities=21% Similarity=0.202 Sum_probs=197.7
Q ss_pred EEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcC----ccccCCC-CCCEEEcccCCCCCCCchhhhcC-----C
Q 017912 107 TLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIP----DDIGNLQ-KLTVLNLADNAVSGEIPSSLVRL-----S 176 (364)
Q Consensus 107 ~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~ 176 (364)
++.++ .+.+++.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+..+..+ +
T Consensus 2 ~~~ls-~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLT-LHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECC-CCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccc-cccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 35666 588999999888888889999999999996666 6778888 99999999999997777777765 9
Q ss_pred CCCEEEccCCcCCCccCcc----CCCC-CccchhhcCCccccccccccc----cC-CCCCcEEEcccCcccccc----ch
Q 017912 177 SLKHLDLSNNQLSGKIPAD----FGNL-KMLSRALLRGNKLTGSIPDSI----GN-MYRLADLDLSMNQISGPI----PD 242 (364)
Q Consensus 177 ~L~~L~l~~n~~~~~~~~~----~~~l-~~L~~L~l~~n~~~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~----~~ 242 (364)
+|++|++++|.+++..+.. +..+ ++|++|++++|++++..+..+ .. .++|++|++++|.+++.. +.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 9999999999998665553 3444 899999999999987666544 33 369999999999998644 44
Q ss_pred hhhCCC-CCCEEEccCCcCCcccchhh----hCC-CCCCEEEcccCCCccc----cCccccC-CCCCCEEEccCCcCCCC
Q 017912 243 ILGKML-VLSTLNLDSNLLSGKIPSTL----LSN-TGMGILNLSRNALGGN----IPDVFGS-KSYFMALDLSYNNLKGP 311 (364)
Q Consensus 243 ~l~~l~-~L~~L~l~~n~l~~~~~~~~----~~~-~~L~~L~l~~n~l~~~----~~~~l~~-~~~L~~L~l~~n~l~~~ 311 (364)
.+...+ +|++|++++|.+++..+..+ ... ++|++|++++|++++. ++..+.. .++|++|++++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 455665 99999999999987666544 344 5999999999999873 3444544 46999999999999875
Q ss_pred cc----hhcccCCCCCeEEccCCcCcccC--------CCCCCCCCCCcccccCCCCCC
Q 017912 312 IP----GSLSSSAYIGHLDLSHNHLCGPI--------PVGSPFDHLEASSFDSNDCLC 357 (364)
Q Consensus 312 ~~----~~l~~l~~L~~L~l~~N~l~g~i--------p~~~~~~~l~~l~l~~n~~~c 357 (364)
.+ ..+..+++|+.|++++|.+.+.. .....+++|+.+++++|+...
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 54 34467799999999999844322 123567788999999998654
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.2e-25 Score=210.14 Aligned_cols=241 Identities=17% Similarity=0.206 Sum_probs=196.9
Q ss_pred cCccccCCCCCCCEEEccCCcCCCCcC----ccccCCCCCCEEEcccCC---CCCCCchhh-------hcCCCCCEEEcc
Q 017912 119 QLPSCITSIASLRVLDLVGNKLSGKIP----DDIGNLQKLTVLNLADNA---VSGEIPSSL-------VRLSSLKHLDLS 184 (364)
Q Consensus 119 ~~p~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~---l~~~~p~~l-------~~l~~L~~L~l~ 184 (364)
.++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|. +++.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 366677888999999999999986543 347789999999999964 445566655 688999999999
Q ss_pred CCcCCC----ccCccCCCCCccchhhcCCcccccccccccc----CC---------CCCcEEEcccCccc-cccc---hh
Q 017912 185 NNQLSG----KIPADFGNLKMLSRALLRGNKLTGSIPDSIG----NM---------YRLADLDLSMNQIS-GPIP---DI 243 (364)
Q Consensus 185 ~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~----~l---------~~L~~L~l~~n~l~-~~~~---~~ 243 (364)
+|.+.. .++..+..+++|++|++++|.++...+..+. .+ ++|++|++++|.++ +.++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 999987 4677788999999999999998754444333 33 89999999999997 3444 46
Q ss_pred hhCCCCCCEEEccCCcCCc-----ccchhhhCCCCCCEEEcccCCCc----cccCccccCCCCCCEEEccCCcCCCC---
Q 017912 244 LGKMLVLSTLNLDSNLLSG-----KIPSTLLSNTGMGILNLSRNALG----GNIPDVFGSKSYFMALDLSYNNLKGP--- 311 (364)
Q Consensus 244 l~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~l~~~~~L~~L~l~~n~l~~~--- 311 (364)
+..+++|++|++++|.++. ..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 7789999999999999983 23337788999999999999997 56778889999999999999999865
Q ss_pred -cchhcc--cCCCCCeEEccCCcCcc----cCCCC--CCCCCCCcccccCCCCCCCC
Q 017912 312 -IPGSLS--SSAYIGHLDLSHNHLCG----PIPVG--SPFDHLEASSFDSNDCLCGN 359 (364)
Q Consensus 312 -~~~~l~--~l~~L~~L~l~~N~l~g----~ip~~--~~~~~l~~l~l~~n~~~c~~ 359 (364)
++..+. .+++|+.|++++|.+++ .+|.. ..+++|+.|++++|++....
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 566664 38999999999999998 46653 34789999999999987654
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=4.8e-24 Score=185.89 Aligned_cols=205 Identities=18% Similarity=0.201 Sum_probs=173.3
Q ss_pred CcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCc-CCCccCccCCCCCccchhhcCC-ccccccccccc
Q 017912 143 KIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQ-LSGKIPADFGNLKMLSRALLRG-NKLTGSIPDSI 220 (364)
Q Consensus 143 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l 220 (364)
.+|. +. .+|++|++++|++++..+..+.++++|++|++++|. ++...+..|..+++|++|++++ |++++..+..+
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 5665 43 489999999999996666688899999999999997 8755556899999999999998 99997666788
Q ss_pred cCCCCCcEEEcccCccccccchhhhCCCCCC---EEEccCC-cCCcccchhhhCCCCCC-EEEcccCCCccccCccccCC
Q 017912 221 GNMYRLADLDLSMNQISGPIPDILGKMLVLS---TLNLDSN-LLSGKIPSTLLSNTGMG-ILNLSRNALGGNIPDVFGSK 295 (364)
Q Consensus 221 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~l~~~ 295 (364)
.++++|++|++++|.+++ +|. ++.+++|+ +|++++| .+++..+..+..+++|+ +|++++|+++...+..+..
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~- 178 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG- 178 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-
Confidence 999999999999999986 565 78888888 9999999 99866666788999999 9999999999544445555
Q ss_pred CCCCEEEccCCc-CCCCcchhcccC-CCCCeEEccCCcCcccCCCCCCCCCCCcccccCCCC
Q 017912 296 SYFMALDLSYNN-LKGPIPGSLSSS-AYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDC 355 (364)
Q Consensus 296 ~~L~~L~l~~n~-l~~~~~~~l~~l-~~L~~L~l~~N~l~g~ip~~~~~~~l~~l~l~~n~~ 355 (364)
++|+.|++++|+ +++..+..+..+ ++|+.|++++|++++ +|.. .+++++.|.+.++..
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC--
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-HhccCceeeccCccC
Confidence 899999999995 986666788889 999999999999985 5543 789999999988763
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=5.5e-23 Score=180.51 Aligned_cols=180 Identities=21% Similarity=0.231 Sum_probs=140.2
Q ss_pred CCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEccc
Q 017912 154 LTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSM 233 (364)
Q Consensus 154 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 233 (364)
.++++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 344555555544 3443332 3555666666665555555566666666666666666655666677888999999999
Q ss_pred CccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcc
Q 017912 234 NQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIP 313 (364)
Q Consensus 234 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 313 (364)
|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 99987777888999999999999999996666667889999999999999998877789999999999999999998777
Q ss_pred hhcccCCCCCeEEccCCcCcccC
Q 017912 314 GSLSSSAYIGHLDLSHNHLCGPI 336 (364)
Q Consensus 314 ~~l~~l~~L~~L~l~~N~l~g~i 336 (364)
..+..+++|+.|++++|++.+..
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTTS
T ss_pred HHHhCCCCCCEEEeeCCceeCCc
Confidence 78899999999999999998763
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=5e-23 Score=186.29 Aligned_cols=195 Identities=25% Similarity=0.393 Sum_probs=125.7
Q ss_pred ccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCC
Q 017912 99 ICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSL 178 (364)
Q Consensus 99 ~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 178 (364)
..++++|++|++++ +.++. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++ .+..+++|
T Consensus 37 ~~~l~~L~~L~l~~-~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFG-TGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTT-SCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTC
T ss_pred HHHcCCcCEEEeeC-CCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCC
Confidence 34566777777774 55543 33 466777777777777777743 33 7777777777777777763 33 46677777
Q ss_pred CEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCC
Q 017912 179 KHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSN 258 (364)
Q Consensus 179 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 258 (364)
++|++++|.+++ ++ .+..+++|++|++++|++++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 110 ~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 110 KTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp CEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence 777777777764 33 26667777777777777664332 6666677777777776664332 666667777777777
Q ss_pred cCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCC
Q 017912 259 LLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKG 310 (364)
Q Consensus 259 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 310 (364)
.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|.+++
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 6664322 5566667777777776665442 5666667777777776653
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.5e-24 Score=198.55 Aligned_cols=244 Identities=16% Similarity=0.202 Sum_probs=200.2
Q ss_pred CCCEEecCCCCCCcccCccccCCC--CCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCC-CchhhhcCCCCCE
Q 017912 104 TLSTLVIADWKGISGQLPSCITSI--ASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGE-IPSSLVRLSSLKH 180 (364)
Q Consensus 104 ~L~~L~l~~~~~l~~~~p~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~ 180 (364)
.++.+++++ +.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++
T Consensus 48 ~~~~l~l~~-~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTG-KNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTT-CBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeecccc-ccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 478999984 5555 4455666 8999999999999976555 66899999999999998865 7888889999999
Q ss_pred EEccCCcCCCccCccCCCCCccchhhcCCc-ccccc-ccccccCCCCCcEEEcccC-ccccc-cchhhhCCC-CCCEEEc
Q 017912 181 LDLSNNQLSGKIPADFGNLKMLSRALLRGN-KLTGS-IPDSIGNMYRLADLDLSMN-QISGP-IPDILGKML-VLSTLNL 255 (364)
Q Consensus 181 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~-~L~~L~l 255 (364)
|++++|.+++..+..++.+++|++|++++| .+++. ++..+.++++|++|++++| .+++. ++..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999998888888999999999999999 67753 6667888999999999999 88765 677788999 9999999
Q ss_pred cCC--cCC-cccchhhhCCCCCCEEEcccCC-CccccCccccCCCCCCEEEccCCc-CCCCcchhcccCCCCCeEEccCC
Q 017912 256 DSN--LLS-GKIPSTLLSNTGMGILNLSRNA-LGGNIPDVFGSKSYFMALDLSYNN-LKGPIPGSLSSSAYIGHLDLSHN 330 (364)
Q Consensus 256 ~~n--~l~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~N 330 (364)
++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999 565 4667778889999999999999 777778888999999999999995 43333346888999999999998
Q ss_pred cCcccCCCC--CCC-CCCCcccccCCCCCC
Q 017912 331 HLCGPIPVG--SPF-DHLEASSFDSNDCLC 357 (364)
Q Consensus 331 ~l~g~ip~~--~~~-~~l~~l~l~~n~~~c 357 (364)
++.. ..+ ..++.|++.+|.+..
T Consensus 283 -----i~~~~~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 283 -----VPDGTLQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp -----SCTTCHHHHHHHSTTSEESCCCSCC
T ss_pred -----cCHHHHHHHHhhCcceEEecccCcc
Confidence 3331 122 236677787777654
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.4e-22 Score=183.33 Aligned_cols=195 Identities=20% Similarity=0.335 Sum_probs=170.1
Q ss_pred cCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccc
Q 017912 124 ITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLS 203 (364)
Q Consensus 124 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 203 (364)
...+++|++|++++|.++. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++ .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCC
Confidence 4567899999999999984 55 68899999999999999984 454 8999999999999999985 33 688999999
Q ss_pred hhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCC
Q 017912 204 RALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNA 283 (364)
Q Consensus 204 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 283 (364)
+|++++|++++. +. +..+++|++|++++|.+++..+ ++.+++|++|++++|.+++ ++. +..+++|++|++++|+
T Consensus 111 ~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCc
Confidence 999999999864 43 8999999999999999986544 8899999999999999985 443 8889999999999999
Q ss_pred CccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcc
Q 017912 284 LGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCG 334 (364)
Q Consensus 284 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g 334 (364)
+++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|++++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 986554 788999999999999998654 38899999999999999876
No 90
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=5.9e-22 Score=194.73 Aligned_cols=225 Identities=24% Similarity=0.277 Sum_probs=163.8
Q ss_pred CceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcC
Q 017912 66 RRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIP 145 (364)
Q Consensus 66 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 145 (364)
.+++.|++++ |.++ .+|. .+++|++|++++ |.++ .+|. .+++|++|++++|.+++ +|
T Consensus 61 ~~L~~L~L~~-------------N~l~-~lp~---~l~~L~~L~Ls~-N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~ 117 (622)
T 3g06_A 61 AHITTLVIPD-------------NNLT-SLPA---LPPELRTLEVSG-NQLT-SLPV---LPPGLLELSIFSNPLTH-LP 117 (622)
T ss_dssp TTCSEEEECS-------------CCCS-CCCC---CCTTCCEEEECS-CCCS-CCCC---CCTTCCEEEECSCCCCC-CC
T ss_pred CCCcEEEecC-------------CCCC-CCCC---cCCCCCEEEcCC-CcCC-cCCC---CCCCCCEEECcCCcCCC-CC
Confidence 3677777777 5555 3444 467778888873 6665 3554 56777777777777764 33
Q ss_pred ccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccC-----------------CCCCccchhhcC
Q 017912 146 DDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADF-----------------GNLKMLSRALLR 208 (364)
Q Consensus 146 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~-----------------~~l~~L~~L~l~ 208 (364)
. .+++|++|++++|+++ .+|.. +++|++|++++|.+++ +|..+ ..+++|+.|+++
T Consensus 118 ~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls 189 (622)
T 3g06_A 118 A---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVS 189 (622)
T ss_dssp C---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred C---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECC
Confidence 3 4466666666666666 34432 3566666666666553 22221 223788999999
Q ss_pred CccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCcccc
Q 017912 209 GNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNI 288 (364)
Q Consensus 209 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 288 (364)
+|.+++ +|.. +++|+.|++++|.++ .+|. .+++|++|++++|.+++ +| ..+++|++|++++|++++ +
T Consensus 190 ~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-l 256 (622)
T 3g06_A 190 DNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-L 256 (622)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-C
T ss_pred CCCCCC-CCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-C
Confidence 999884 4543 478999999999998 4443 35889999999999985 55 456899999999999984 5
Q ss_pred CccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCC
Q 017912 289 PDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV 338 (364)
Q Consensus 289 ~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~ 338 (364)
|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++.+|.
T Consensus 257 p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 257 PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 54 6789999999999999 7899999999999999999999987764
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=5.7e-22 Score=182.63 Aligned_cols=218 Identities=20% Similarity=0.152 Sum_probs=89.6
Q ss_pred CCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCch-hhhcCCCCCE-EEccCCcCCCccCccCCCCCccchhh
Q 017912 129 SLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPS-SLVRLSSLKH-LDLSNNQLSGKIPADFGNLKMLSRAL 206 (364)
Q Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~-L~l~~n~~~~~~~~~~~~l~~L~~L~ 206 (364)
++++|++++|.++...+..|.++++|++|+|++|++.+.+|. .|.+++++++ +.++.|+++...|..|..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 444444444444422222344444444444444444333332 2334444332 23333444433344444444444444
Q ss_pred cCCccccccccccccCCCCCcEEEccc-CccccccchhhhCC-CCCCEEEccCCcCCcccchhhhCCCCCCEEEccc-CC
Q 017912 207 LRGNKLTGSIPDSIGNMYRLADLDLSM-NQISGPIPDILGKM-LVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSR-NA 283 (364)
Q Consensus 207 l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-n~ 283 (364)
+++|++....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|.++ .++.......+|++|++++ |.
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTT
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCc
Confidence 444444433333333333444444433 22322222222222 23444555555554 2333322334445555543 33
Q ss_pred CccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCCCCCCCCCcccc
Q 017912 284 LGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSF 350 (364)
Q Consensus 284 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~~~~~~l~~l~l 350 (364)
++...+..|..+++|++|++++|+++. +|.. .+.+|+.|.+.++.-...+|....+++|+.+++
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASL 253 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred ccCCCHHHhccCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence 332222344445555555555555542 2221 133344444444333334444444444544444
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.7e-21 Score=165.98 Aligned_cols=158 Identities=22% Similarity=0.206 Sum_probs=61.6
Q ss_pred CCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcc
Q 017912 153 KLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLS 232 (364)
Q Consensus 153 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 232 (364)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 33444444444332222223333444444444443332222223333333333333333332222223334444444444
Q ss_pred cCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCc
Q 017912 233 MNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPI 312 (364)
Q Consensus 233 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 312 (364)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .++.|+.|+++.|+++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 444443333333444444444444444443333333444444444444443331 2234444444444444444
Q ss_pred chhcc
Q 017912 313 PGSLS 317 (364)
Q Consensus 313 ~~~l~ 317 (364)
|..++
T Consensus 182 p~~~~ 186 (208)
T 2o6s_A 182 RNSAG 186 (208)
T ss_dssp BCTTS
T ss_pred eccCc
Confidence 44443
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=3.1e-21 Score=187.51 Aligned_cols=188 Identities=30% Similarity=0.397 Sum_probs=126.3
Q ss_pred CCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEE
Q 017912 103 DTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLD 182 (364)
Q Consensus 103 ~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 182 (364)
.++++|++++ +.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+
T Consensus 59 ~~L~~L~Ls~-n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNR-LNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCS-SCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CCccEEEeCC-CCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 3788888884 67765 666553 67888888888887 566 456788888888888875 665 544 788888
Q ss_pred ccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCc
Q 017912 183 LSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSG 262 (364)
Q Consensus 183 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 262 (364)
+++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 88888775 555 56777777777777774 454 45677777777777765 444 43 67777777777776
Q ss_pred ccchhhhCCCCC-------CEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccC
Q 017912 263 KIPSTLLSNTGM-------GILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSS 319 (364)
Q Consensus 263 ~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l 319 (364)
.+|. +.. +| +.|++++|+++ .+|..+..+++|+.|++++|.+++.+|..+..+
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 4554 332 45 66777777666 355555556667777777777766666665543
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.8e-21 Score=165.88 Aligned_cols=161 Identities=24% Similarity=0.273 Sum_probs=84.7
Q ss_pred CCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEc
Q 017912 104 TLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDL 183 (364)
Q Consensus 104 ~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 183 (364)
++++|++++ +.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 29 ~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLET-NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCC-CccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 556666652 5555444444555556666666666555443344455555555555555555333333445555555555
Q ss_pred cCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcc
Q 017912 184 SNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGK 263 (364)
Q Consensus 184 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 263 (364)
++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 108 ~~N~l~~~~~------------------------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~- 162 (208)
T 2o6s_A 108 NTNQLQSLPD------------------------GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC- 162 (208)
T ss_dssp CSSCCCCCCT------------------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred CCCcCcccCH------------------------hHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence 5555543333 334444555555555555554444444555555566665555442
Q ss_pred cchhhhCCCCCCEEEcccCCCccccCccccCCC
Q 017912 264 IPSTLLSNTGMGILNLSRNALGGNIPDVFGSKS 296 (364)
Q Consensus 264 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 296 (364)
.+++|++|+++.|+++|.+|.+++.++
T Consensus 163 ------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 163 ------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 224556666666666666666555444
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=1.3e-21 Score=190.13 Aligned_cols=196 Identities=23% Similarity=0.340 Sum_probs=165.7
Q ss_pred ccce-EecCCCCceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEE
Q 017912 56 WYGV-SCDPTTRRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLD 134 (364)
Q Consensus 56 w~gv-~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~ 134 (364)
|.|+ .|.. ++++.|++++ +.+++ +|..+. ++|++|+++ .|.++ .+| ..+++|++|+
T Consensus 50 ~~~l~~C~~--~~L~~L~Ls~-------------n~L~~-lp~~l~--~~L~~L~Ls-~N~l~-~ip---~~l~~L~~L~ 106 (571)
T 3cvr_A 50 VSLLKECLI--NQFSELQLNR-------------LNLSS-LPDNLP--PQITVLEIT-QNALI-SLP---ELPASLEYLD 106 (571)
T ss_dssp HHHHHHHHH--TTCSEEECCS-------------SCCSC-CCSCCC--TTCSEEECC-SSCCS-CCC---CCCTTCCEEE
T ss_pred hhhcccccc--CCccEEEeCC-------------CCCCc-cCHhHc--CCCCEEECc-CCCCc-ccc---cccCCCCEEE
Confidence 9999 6863 4799999998 88887 777663 789999999 48887 677 5579999999
Q ss_pred ccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccc
Q 017912 135 LVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTG 214 (364)
Q Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 214 (364)
+++|.+++ +|. +.+ +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|++++
T Consensus 107 Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 107 ACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp CCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred ccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence 99999996 776 665 99999999999996 676 68999999999999985 665 57899999999999996
Q ss_pred cccccccCCCCCcEEEcccCccccccchhhhCCCCC-------CEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccc
Q 017912 215 SIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVL-------STLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGN 287 (364)
Q Consensus 215 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 287 (364)
+|. +. ++|++|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++.
T Consensus 175 -lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 175 -LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp -CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred -cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 777 65 89999999999998 6665 543 77 99999999998 6888888899999999999999998
Q ss_pred cCccccCC
Q 017912 288 IPDVFGSK 295 (364)
Q Consensus 288 ~~~~l~~~ 295 (364)
+|..+..+
T Consensus 246 ~p~~l~~l 253 (571)
T 3cvr_A 246 IRESLSQQ 253 (571)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHHh
Confidence 88776543
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=5.8e-21 Score=164.17 Aligned_cols=137 Identities=18% Similarity=0.198 Sum_probs=71.6
Q ss_pred CCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEcc
Q 017912 225 RLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLS 304 (364)
Q Consensus 225 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~ 304 (364)
++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 44445555554444333444455555555555555554444555555555555555555554444444555555555555
Q ss_pred CCcCCCCcchhcccCCCCCeEEccCCcCcccCCC-CCCCCCCCcccccCCCCCCCCCC
Q 017912 305 YNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV-GSPFDHLEASSFDSNDCLCGNPL 361 (364)
Q Consensus 305 ~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~-~~~~~~l~~l~l~~n~~~c~~~~ 361 (364)
+|++++..+..+..+++|+.|++++|++++..+. ...+++|+.+++.+|++.|+|++
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 5555554455555555555555555555544432 23455555555666666665543
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=2.8e-20 Score=171.35 Aligned_cols=221 Identities=17% Similarity=0.089 Sum_probs=162.5
Q ss_pred CCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCc-cccCCCCCCE-EEcccCCCCCCCchhhhcCCCCCE
Q 017912 103 DTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPD-DIGNLQKLTV-LNLADNAVSGEIPSSLVRLSSLKH 180 (364)
Q Consensus 103 ~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~-L~L~~n~l~~~~p~~l~~l~~L~~ 180 (364)
+++++|+++ .|.++...+..|.++++|++|+|++|.+.+.+|. .|.+++++++ +.+..|+++...|..+..+++|++
T Consensus 30 ~~l~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFV-LTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEE-SCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEcc-CCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 578999998 4888755456789999999999999998766654 5778888775 566678888666777888999999
Q ss_pred EEccCCcCCCccCccCCCCCccchhhcCC-ccccccccccccCCC-CCcEEEcccCccccccchhhhCCCCCCEEEccC-
Q 017912 181 LDLSNNQLSGKIPADFGNLKMLSRALLRG-NKLTGSIPDSIGNMY-RLADLDLSMNQISGPIPDILGKMLVLSTLNLDS- 257 (364)
Q Consensus 181 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~- 257 (364)
|++++|.+....+..+....++..+++.+ +++....+..+..+. .++.|++++|+++ .++.......+|+++++.+
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTC
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccC
Confidence 99999998866555666677777888765 455533344555554 5888999999998 4454444567899999875
Q ss_pred CcCCcccc-hhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCC
Q 017912 258 NLLSGKIP-STLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHN 330 (364)
Q Consensus 258 n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N 330 (364)
|.++ .+| ..|..+++|++|++++|+++...+.. +.+|+.|.+.++.--..+| .+..+++|+.+++.++
T Consensus 188 n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 188 NNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred Cccc-CCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 5565 555 56788899999999999998554433 4566677666654434566 3778899999998764
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=4.7e-21 Score=177.22 Aligned_cols=181 Identities=22% Similarity=0.139 Sum_probs=101.1
Q ss_pred CEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccC
Q 017912 155 TVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMN 234 (364)
Q Consensus 155 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 234 (364)
++++++++.++ .+|..+. ..+++|++++|.+++..+..+. .++++|++|++++|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~-----------------------~~l~~L~~L~L~~N 74 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTP-----------------------TRLTNLHSLLLSHN 74 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSS-----------------------SCCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhh-----------------------hcccccCEEECCCC
Confidence 35566666555 3444332 2455555555555533333333 04455555555555
Q ss_pred ccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcch
Q 017912 235 QISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPG 314 (364)
Q Consensus 235 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 314 (364)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+.
T Consensus 75 ~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 75 HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 55544444555566666666666666544444556666666666666666666666666666666666666666643333
Q ss_pred hc---ccCCCCCeEEccCCcCcccCCC-CCCCCC--CCcccccCCCCCCCCCC
Q 017912 315 SL---SSSAYIGHLDLSHNHLCGPIPV-GSPFDH--LEASSFDSNDCLCGNPL 361 (364)
Q Consensus 315 ~l---~~l~~L~~L~l~~N~l~g~ip~-~~~~~~--l~~l~l~~n~~~c~~~~ 361 (364)
.+ ..+++|+.|++++|++++..+. ...++. ++.+++.+||+.|+|.+
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 33 4566777777777776632221 112332 35678888888888753
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=160.23 Aligned_cols=157 Identities=20% Similarity=0.174 Sum_probs=120.0
Q ss_pred CCEEEccCCcCCCccCccCCCCCccchhhcCCcccccccc-ccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEcc
Q 017912 178 LKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIP-DSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLD 256 (364)
Q Consensus 178 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 256 (364)
-+++++++|.++ .+|..+. ..+++|++++|++++..+ ..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 357888888887 4666543 345788888888876544 346778888888888888876666677888888888888
Q ss_pred CCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccC
Q 017912 257 SNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPI 336 (364)
Q Consensus 257 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~i 336 (364)
+|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 88887666667777888888888888888777777888888888888888888777777878888888888888777554
Q ss_pred C
Q 017912 337 P 337 (364)
Q Consensus 337 p 337 (364)
+
T Consensus 170 ~ 170 (220)
T 2v70_A 170 Y 170 (220)
T ss_dssp G
T ss_pred c
Confidence 4
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=1.1e-19 Score=157.28 Aligned_cols=162 Identities=23% Similarity=0.271 Sum_probs=99.5
Q ss_pred CCCCCCCCCCccceEecCCCCceEEEEcCCCCCchhhhhcCCCCCcccccCccccCCCCCCEEecCCCCCCcccCccccC
Q 017912 46 SWTGDNCCTNWYGVSCDPTTRRVTDISLRGESEDPILVKAGRSGYMTGSINPAICQLDTLSTLVIADWKGISGQLPSCIT 125 (364)
Q Consensus 46 ~W~~~~~c~~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~ 125 (364)
.|.+...|+ |.+|.|... ++ +.+|..+. ++|++|+++ .|.+++..|..+.
T Consensus 12 ~~~~~~~Cs-~~~v~c~~~--~l------------------------~~ip~~~~--~~L~~L~Ls-~n~i~~~~~~~~~ 61 (229)
T 3e6j_A 12 ACPSQCSCS-GTTVDCRSK--RH------------------------ASVPAGIP--TNAQILYLH-DNQITKLEPGVFD 61 (229)
T ss_dssp CCCTTCEEE-TTEEECTTS--CC------------------------SSCCSCCC--TTCSEEECC-SSCCCCCCTTTTT
T ss_pred cCCCCCEEe-CCEeEccCC--Cc------------------------CccCCCCC--CCCCEEEcC-CCccCccCHHHhh
Confidence 455667787 999999742 11 11232221 567777777 3666666666667
Q ss_pred CCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchh
Q 017912 126 SIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRA 205 (364)
Q Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 205 (364)
.+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL 140 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE
T ss_pred CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE
Confidence 7777777777777776444445566777777777777766444444566667777777766666 555556666666666
Q ss_pred hcCCccccccccccccCCCCCcEEEcccCcccc
Q 017912 206 LLRGNKLTGSIPDSIGNMYRLADLDLSMNQISG 238 (364)
Q Consensus 206 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 238 (364)
++++|++++..+..+..+++|++|++++|.+..
T Consensus 141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 666666654444445555556666665555543
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=7.8e-20 Score=163.91 Aligned_cols=173 Identities=23% Similarity=0.298 Sum_probs=131.5
Q ss_pred cCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccc
Q 017912 124 ITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLS 203 (364)
Q Consensus 124 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 203 (364)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++. +. +.++++|++|++++|.+++ ++ .+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence 4567889999999998874 33 478889999999999998854 43 7888999999999998874 33 477888888
Q ss_pred hhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCC
Q 017912 204 RALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNA 283 (364)
Q Consensus 204 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 283 (364)
+|++++|++++. ..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++..+ +..+++|++|++++|+
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 888888887753 4577778888888888887754 467777888888888888775433 6777788888888888
Q ss_pred CccccCccccCCCCCCEEEccCCcCCC
Q 017912 284 LGGNIPDVFGSKSYFMALDLSYNNLKG 310 (364)
Q Consensus 284 l~~~~~~~l~~~~~L~~L~l~~n~l~~ 310 (364)
+++. + .+..+++|+.|++++|.++.
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCC-h-hhccCCCCCEEECcCCcccC
Confidence 7753 3 36777788888888887764
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=1.1e-19 Score=157.25 Aligned_cols=136 Identities=24% Similarity=0.209 Sum_probs=70.4
Q ss_pred CCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEc
Q 017912 224 YRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDL 303 (364)
Q Consensus 224 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 303 (364)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 34555555555555444444555555555555555554333333445555555555555555444444555555555555
Q ss_pred cCCcCCCCcchhcccCCCCCeEEccCCcCcccCCC-CCCCCCCCcccccCCCCCCCCC
Q 017912 304 SYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV-GSPFDHLEASSFDSNDCLCGNP 360 (364)
Q Consensus 304 ~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~-~~~~~~l~~l~l~~n~~~c~~~ 360 (364)
++|+++ .+|..+..+++|+.|++++|++++..+. ...+++|+.+++.+|++.|+|+
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 555555 4455555555555555555555543332 2344555555555555555553
No 103
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.82 E-value=1.4e-21 Score=196.19 Aligned_cols=262 Identities=22% Similarity=0.221 Sum_probs=128.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCCCccceEecCCCCceEEEEcCCCCCchhhhhcCCCCCcccccCccc
Q 017912 21 CSPSDKAALLALKSSLNEPYLGIFASWT-GDNCCTNWYGVSCDPTTRRVTDISLRGESEDPILVKAGRSGYMTGSINPAI 99 (364)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~~~~~~W~-~~~~c~~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (364)
....+++++++++.+.....+..-..|. .......|.++.+.. .+++++++.+ +.+.. ++..+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~-------------n~~~~-~~~~~ 192 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFA-------------NGKDE-ANQAL 192 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeC-------------CCCCc-chhhH
Confidence 3456889999998877544333345675 233333498888874 5789998876 44444 23333
Q ss_pred cCCCCCCEEecCC----CCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcC
Q 017912 100 CQLDTLSTLVIAD----WKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRL 175 (364)
Q Consensus 100 ~~l~~L~~L~l~~----~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 175 (364)
.....|+.+.+.+ ++.+. ..+..+..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..+.++
T Consensus 193 l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 269 (727)
T 4b8c_D 193 LQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL 269 (727)
T ss_dssp ------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred hhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence 3333444433321 12222 45667888888999999999888 67777778889999999999888 788888888
Q ss_pred CCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCC-CCEEE
Q 017912 176 SSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLV-LSTLN 254 (364)
Q Consensus 176 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~ 254 (364)
++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..++++++|++|++++|.+++.+|..+..... +..++
T Consensus 270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~ 347 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY 347 (727)
T ss_dssp TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence 89999999999888 77888888888999999888887 77877888888888888888888888877754322 22367
Q ss_pred ccCCcCCcccchhhhCCCCCCEEEcccC--------CCccccCccccCCCCCCEEEccCCcCC
Q 017912 255 LDSNLLSGKIPSTLLSNTGMGILNLSRN--------ALGGNIPDVFGSKSYFMALDLSYNNLK 309 (364)
Q Consensus 255 l~~n~l~~~~~~~~~~~~~L~~L~l~~n--------~l~~~~~~~l~~~~~L~~L~l~~n~l~ 309 (364)
+++|.+++.+|.. |+.|+++.| .+.+..+..+..+..+....+++|.+.
T Consensus 348 l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 348 LRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred hccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 7888888776643 445556655 233333333444555556666666553
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=159.76 Aligned_cols=157 Identities=18% Similarity=0.229 Sum_probs=139.9
Q ss_pred CCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccC-ccCCCCCccchhhcCCccccccccccccCCCCCcEEEcc
Q 017912 154 LTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIP-ADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLS 232 (364)
Q Consensus 154 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 232 (364)
-+++++++|.++ .+|..+. ..+++|++++|.+++..+ ..+..+++|++|++++|++++..+..+.++++|++|+++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 358999999998 6776553 467899999999986644 458899999999999999998777789999999999999
Q ss_pred cCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCc
Q 017912 233 MNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPI 312 (364)
Q Consensus 233 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 312 (364)
+|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99999888888999999999999999999888888999999999999999999988999999999999999999998754
Q ss_pred c
Q 017912 313 P 313 (364)
Q Consensus 313 ~ 313 (364)
+
T Consensus 170 ~ 170 (220)
T 2v70_A 170 Y 170 (220)
T ss_dssp G
T ss_pred c
Confidence 4
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1e-19 Score=163.23 Aligned_cols=174 Identities=28% Similarity=0.386 Sum_probs=144.7
Q ss_pred ccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCC
Q 017912 99 ICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSL 178 (364)
Q Consensus 99 ~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 178 (364)
+.++++|++|++++ +.+.. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++ ++ .+..+++|
T Consensus 42 ~~~l~~L~~L~l~~-~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANN-SDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTT-SCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTC
T ss_pred hhhcCcccEEEccC-CCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCC
Confidence 45688899999984 66654 33 47889999999999999986444 8899999999999999984 44 48889999
Q ss_pred CEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCC
Q 017912 179 KHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSN 258 (364)
Q Consensus 179 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 258 (364)
++|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 9999999998753 4688899999999999998864 568889999999999999986654 888999999999999
Q ss_pred cCCcccchhhhCCCCCCEEEcccCCCccc
Q 017912 259 LLSGKIPSTLLSNTGMGILNLSRNALGGN 287 (364)
Q Consensus 259 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 287 (364)
.+++ ++ .+..+++|+.|++++|+++..
T Consensus 189 ~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 189 HISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred cCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 9984 44 478889999999999998754
No 106
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=4e-22 Score=196.19 Aligned_cols=133 Identities=10% Similarity=0.066 Sum_probs=73.8
Q ss_pred CCCCcEEEcccCccccccchhhhC-CCCCCEEEcc----CCcCCcc-----cchhhhCCCCCCEEEcccCC--CccccCc
Q 017912 223 MYRLADLDLSMNQISGPIPDILGK-MLVLSTLNLD----SNLLSGK-----IPSTLLSNTGMGILNLSRNA--LGGNIPD 290 (364)
Q Consensus 223 l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~----~n~l~~~-----~~~~~~~~~~L~~L~l~~n~--l~~~~~~ 290 (364)
+++|++|+++.+.+++..+..++. +++|++|+++ .|.+++. ++..+..+++|++|++++|. +++..+.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 455666666555555554444443 5666666664 4445432 22334445666666665432 4433333
Q ss_pred cc-cCCCCCCEEEccCCcCCC-CcchhcccCCCCCeEEccCCcCccc-CCCC-CCCCCCCcccccCCCC
Q 017912 291 VF-GSKSYFMALDLSYNNLKG-PIPGSLSSSAYIGHLDLSHNHLCGP-IPVG-SPFDHLEASSFDSNDC 355 (364)
Q Consensus 291 ~l-~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~N~l~g~-ip~~-~~~~~l~~l~l~~n~~ 355 (364)
.+ ..+++|++|++++|.+++ .++..+..+++|+.|++++|.+++. ++.. ..+++|+.|++++|+.
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence 33 236667777777777665 2344445667777777777776543 2221 2456677777777763
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.1e-19 Score=168.08 Aligned_cols=177 Identities=23% Similarity=0.144 Sum_probs=146.4
Q ss_pred CEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhh-cCCCCCEEEccCCcCCCccCccCCCCCccchhhcCC
Q 017912 131 RVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLV-RLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRG 209 (364)
Q Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 209 (364)
++++++++.++ .+|..+. ..+++|+|++|.+++..+..+. ++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 68999999998 5777664 5699999999999966666666 899999999999999977777899999999999999
Q ss_pred ccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhh---hCCCCCCEEEcccCCCcc
Q 017912 210 NKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTL---LSNTGMGILNLSRNALGG 286 (364)
Q Consensus 210 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~~ 286 (364)
|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99987767778899999999999999987778888899999999999999985433334 467888999999998886
Q ss_pred ccCccccCCCC--CCEEEccCCcCCC
Q 017912 287 NIPDVFGSKSY--FMALDLSYNNLKG 310 (364)
Q Consensus 287 ~~~~~l~~~~~--L~~L~l~~n~l~~ 310 (364)
..+..+..++. ++.|++++|.+..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cCHHHhhhccHhhcceEEecCCCccC
Confidence 66566666666 4778888888875
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.9e-19 Score=153.53 Aligned_cols=153 Identities=20% Similarity=0.293 Sum_probs=120.8
Q ss_pred CEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccC
Q 017912 155 TVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMN 234 (364)
Q Consensus 155 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 234 (364)
+.++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|++++..|..+.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57888888887 6676543 68888888888888666667888888888888888888777778888888888888888
Q ss_pred ccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCC
Q 017912 235 QISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKG 310 (364)
Q Consensus 235 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 310 (364)
.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8876555566778888888888888887767777778888888888888887777777778888888888887764
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1.8e-19 Score=176.73 Aligned_cols=174 Identities=24% Similarity=0.320 Sum_probs=135.7
Q ss_pred cCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccc
Q 017912 124 ITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLS 203 (364)
Q Consensus 124 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 203 (364)
+..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+++..+ +..+++|++|+|++|.+.+ ++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 4567889999999999874 44 58889999999999999985433 8889999999999998874 33 678888888
Q ss_pred hhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCC
Q 017912 204 RALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNA 283 (364)
Q Consensus 204 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 283 (364)
.|++++|++.+ + ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|+
T Consensus 113 ~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 88888888874 2 3477788888888888888754 567778888888888888875544 7777888888888888
Q ss_pred CccccCccccCCCCCCEEEccCCcCCCC
Q 017912 284 LGGNIPDVFGSKSYFMALDLSYNNLKGP 311 (364)
Q Consensus 284 l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 311 (364)
+++. ..+..+++|+.|+|++|.+.+.
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 8754 3477778888888888877653
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=3.6e-19 Score=174.66 Aligned_cols=177 Identities=28% Similarity=0.383 Sum_probs=149.5
Q ss_pred ccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCC
Q 017912 99 ICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSL 178 (364)
Q Consensus 99 ~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 178 (364)
+..+++|+.|++++ +.+.. ++ .+..+++|++|+|++|.+++..+ +..+++|++|+|++|.+.+ ++ .+..+++|
T Consensus 39 ~~~L~~L~~L~l~~-n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANN-SDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTT-CCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTC
T ss_pred hhcCCCCCEEECcC-CCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCC
Confidence 56788899999984 66653 44 48889999999999999996544 8899999999999999984 44 68899999
Q ss_pred CEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCC
Q 017912 179 KHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSN 258 (364)
Q Consensus 179 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 258 (364)
++|++++|.+.+ + ..+..+++|+.|++++|++++. ..+..+++|+.|++++|.+++..| +..+++|+.|+|++|
T Consensus 112 ~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 999999999985 3 4588999999999999999865 568899999999999999987766 889999999999999
Q ss_pred cCCcccchhhhCCCCCCEEEcccCCCccccCc
Q 017912 259 LLSGKIPSTLLSNTGMGILNLSRNALGGNIPD 290 (364)
Q Consensus 259 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 290 (364)
.+++ + ..+..+++|+.|+|++|++.+....
T Consensus 186 ~i~~-l-~~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 186 HISD-L-RALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp CCCB-C-GGGTTCTTCSEEECCSEEEECCCCC
T ss_pred CCCC-C-hHHccCCCCCEEEccCCcCcCCccc
Confidence 9985 3 3588899999999999999865443
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.80 E-value=2.3e-22 Score=196.17 Aligned_cols=120 Identities=22% Similarity=0.282 Sum_probs=107.1
Q ss_pred CCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEcc
Q 017912 225 RLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLS 304 (364)
Q Consensus 225 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~ 304 (364)
.|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| .++.+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 58999999999986 565 899999999999999999 889999999999999999999997 56 78999999999999
Q ss_pred CCcCCCCc-chhcccCCCCCeEEccCCcCcccCCCCC----CCCCCCccc
Q 017912 305 YNNLKGPI-PGSLSSSAYIGHLDLSHNHLCGPIPVGS----PFDHLEASS 349 (364)
Q Consensus 305 ~n~l~~~~-~~~l~~l~~L~~L~l~~N~l~g~ip~~~----~~~~l~~l~ 349 (364)
+|.+++.. |..+..+++|+.|++++|++++.+|... .+++|+.|+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 99999876 9999999999999999999998877653 267777764
No 112
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=6.8e-21 Score=187.43 Aligned_cols=217 Identities=16% Similarity=0.110 Sum_probs=153.5
Q ss_pred ccCccccCCCCCCCEEEccCCcCCCCcC-ccccCCCCCCEEEcccCCCC-CCCchhhhcCCCCCEEEccC----------
Q 017912 118 GQLPSCITSIASLRVLDLVGNKLSGKIP-DDIGNLQKLTVLNLADNAVS-GEIPSSLVRLSSLKHLDLSN---------- 185 (364)
Q Consensus 118 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~l~~---------- 185 (364)
+.+|..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+. +.++.....+++|++|++++
T Consensus 283 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence 3455555666677777777777653332 234667777777777 3332 22333345677888888883
Q ss_pred -CcCCCc-cCccCCCCCccchhhcCCccccccccccccC-CCCCcEEEcc----cCccccc-----cchhhhCCCCCCEE
Q 017912 186 -NQLSGK-IPADFGNLKMLSRALLRGNKLTGSIPDSIGN-MYRLADLDLS----MNQISGP-----IPDILGKMLVLSTL 253 (364)
Q Consensus 186 -n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~----~n~l~~~-----~~~~l~~l~~L~~L 253 (364)
+.++.. ++.....+++|++|++..+.+++..+..+.. +++|++|+++ .|.+++. ++..+..+++|++|
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L 441 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEE
Confidence 444432 2222345788999999888888776666665 8899999996 6677753 44557789999999
Q ss_pred EccCCc--CCcccchhhh-CCCCCCEEEcccCCCccc-cCccccCCCCCCEEEccCCcCCCC-cchhcccCCCCCeEEcc
Q 017912 254 NLDSNL--LSGKIPSTLL-SNTGMGILNLSRNALGGN-IPDVFGSKSYFMALDLSYNNLKGP-IPGSLSSSAYIGHLDLS 328 (364)
Q Consensus 254 ~l~~n~--l~~~~~~~~~-~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~ 328 (364)
++++|. +++..+..+. .+++|++|++++|++++. ++..+..+++|++|++++|.+++. ++.....+++|++|+++
T Consensus 442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls 521 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521 (592)
T ss_dssp EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEE
T ss_pred EEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECc
Confidence 998654 6655555554 478999999999999873 455668899999999999998764 34445679999999999
Q ss_pred CCcCccc
Q 017912 329 HNHLCGP 335 (364)
Q Consensus 329 ~N~l~g~ 335 (364)
+|++++.
T Consensus 522 ~n~it~~ 528 (592)
T 3ogk_B 522 GYRASMT 528 (592)
T ss_dssp SCBCCTT
T ss_pred CCcCCHH
Confidence 9998754
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=5.6e-19 Score=149.08 Aligned_cols=105 Identities=19% Similarity=0.273 Sum_probs=41.3
Q ss_pred CCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEE
Q 017912 151 LQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLD 230 (364)
Q Consensus 151 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 230 (364)
+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 334444444444443 223 2344444444444444322 111233333333333333333333333333444444444
Q ss_pred cccCccccccchhhhCCCCCCEEEccCCc
Q 017912 231 LSMNQISGPIPDILGKMLVLSTLNLDSNL 259 (364)
Q Consensus 231 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 259 (364)
+++|.+++..+..++.+++|++|++++|.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 44444443334444444444444444443
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=8.4e-19 Score=147.99 Aligned_cols=153 Identities=17% Similarity=0.237 Sum_probs=120.8
Q ss_pred CCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccch
Q 017912 125 TSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSR 204 (364)
Q Consensus 125 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 204 (364)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ . +..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 55678888888888887 555 6788888888988888665 2 346788889999999999888777888888999999
Q ss_pred hhcCCccccccccccccCCCCCcEEEcccCc-cccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCC
Q 017912 205 ALLRGNKLTGSIPDSIGNMYRLADLDLSMNQ-ISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNA 283 (364)
Q Consensus 205 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 283 (364)
|++++|++++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 9999999887778888899999999999998 54 454 57788888888888888874 33 56677778888888877
Q ss_pred Cc
Q 017912 284 LG 285 (364)
Q Consensus 284 l~ 285 (364)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 65
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=7.4e-19 Score=155.20 Aligned_cols=170 Identities=18% Similarity=0.279 Sum_probs=106.6
Q ss_pred CCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEE
Q 017912 102 LDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHL 181 (364)
Q Consensus 102 l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 181 (364)
+.+++.+++. .+.+++ ++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++ ++. +..+++|++|
T Consensus 18 l~~l~~l~l~-~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLG-KQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHT-CSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEE
T ss_pred HHHHHHHHhc-CCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEE
Confidence 3445555565 245543 22 3566777888888887777 344 56777778888888877774 333 7777777888
Q ss_pred EccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCC
Q 017912 182 DLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLS 261 (364)
Q Consensus 182 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 261 (364)
++++|.+++ ++.. .. ++|++|++++|++++. + .+..+++|++|++++|.+++. + .++.+++|++|++++|.++
T Consensus 91 ~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCcc-cc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 887777764 3332 22 6677777777766642 2 366666666666666666543 2 4566666666666666666
Q ss_pred cccchhhhCCCCCCEEEcccCCCccc
Q 017912 262 GKIPSTLLSNTGMGILNLSRNALGGN 287 (364)
Q Consensus 262 ~~~~~~~~~~~~L~~L~l~~n~l~~~ 287 (364)
+. ..+..+++|+.|++++|++++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 43 4455666666666666666543
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=8.5e-19 Score=154.79 Aligned_cols=171 Identities=20% Similarity=0.228 Sum_probs=141.6
Q ss_pred CCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchh
Q 017912 126 SIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRA 205 (364)
Q Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 205 (364)
.+.+++.++++.+.+++ ++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 45677788899999884 34 5788999999999999998 555 68899999999999999985443 8899999999
Q ss_pred hcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCc
Q 017912 206 LLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALG 285 (364)
Q Consensus 206 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 285 (364)
++++|++++ ++. +.. ++|++|++++|.+++. ..++.+++|++|++++|.+++. + .+..+++|++|++++|+++
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 999999985 443 333 8899999999999864 3588899999999999999854 3 6788899999999999998
Q ss_pred cccCccccCCCCCCEEEccCCcCCCC
Q 017912 286 GNIPDVFGSKSYFMALDLSYNNLKGP 311 (364)
Q Consensus 286 ~~~~~~l~~~~~L~~L~l~~n~l~~~ 311 (364)
+. ..+..+++|+.|++++|.+++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 76 5688889999999999998754
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=1.6e-18 Score=145.66 Aligned_cols=177 Identities=19% Similarity=0.267 Sum_probs=136.5
Q ss_pred CEEEccCCcCCCccCccCCCCCccchhhcCCccccccccc-cccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccC
Q 017912 179 KHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPD-SIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDS 257 (364)
Q Consensus 179 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 257 (364)
+++++++++++ .+|..+.. ++++|++++|++++..+. .+..+++|++|++++|.+++..|..++.+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78999999986 67776544 899999999999866554 488899999999999999988888999999999999999
Q ss_pred CcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcch-hcccCCCCCeEEccCCcCcccC
Q 017912 258 NLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPG-SLSSSAYIGHLDLSHNHLCGPI 336 (364)
Q Consensus 258 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~N~l~g~i 336 (364)
|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..+. ++.. .++...+..+......
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGA 165 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCC
Confidence 999987777788899999999999999998898999999999999999999876542 1111 0111122333333333
Q ss_pred CCCCCCCCCCcccccCCCCCCCCCCC
Q 017912 337 PVGSPFDHLEASSFDSNDCLCGNPLR 362 (364)
Q Consensus 337 p~~~~~~~l~~l~l~~n~~~c~~~~~ 362 (364)
|. .+......++..+.+.|..+..
T Consensus 166 P~--~l~~~~l~~l~~~~~~C~~~~~ 189 (192)
T 1w8a_A 166 PS--KVRDVQIKDLPHSEFKCSSENS 189 (192)
T ss_dssp ST--TTTTSBGGGSCTTTCCCCCC--
T ss_pred Ch--HHcCCChhhCcHhhcCcCCCCC
Confidence 43 5666677788889998975543
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=8.1e-21 Score=185.21 Aligned_cols=196 Identities=17% Similarity=0.141 Sum_probs=149.6
Q ss_pred CCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCC-------------CCCCCchhhhcCCCCCEEE-ccCCcCCC
Q 017912 125 TSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNA-------------VSGEIPSSLVRLSSLKHLD-LSNNQLSG 190 (364)
Q Consensus 125 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~p~~l~~l~~L~~L~-l~~n~~~~ 190 (364)
..+++|+.|++++|.++ .+|..++++++|++|++++|. ..+.+|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45677777777777776 677777777777777775553 4556677777777788777 5554322
Q ss_pred ccCc------cCCC--CCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCc
Q 017912 191 KIPA------DFGN--LKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSG 262 (364)
Q Consensus 191 ~~~~------~~~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 262 (364)
.++. .+.. ...|+.|++++|.+++ +|. ++.+++|++|++++|.++ .+|..++.+++|+.|++++|.+++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 1110 0000 1247889999999885 676 889999999999999998 778899999999999999999985
Q ss_pred ccchhhhCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCCcCCCCcch---hcccCCCCCeEEc
Q 017912 263 KIPSTLLSNTGMGILNLSRNALGGNI-PDVFGSKSYFMALDLSYNNLKGPIPG---SLSSSAYIGHLDL 327 (364)
Q Consensus 263 ~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l 327 (364)
+| .+..+++|+.|++++|++++.. |..++.+++|+.|++++|.+++..+. .+..+++|+.|++
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 66 7888999999999999999876 88899999999999999999865442 2345889998874
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=7.1e-18 Score=141.68 Aligned_cols=131 Identities=27% Similarity=0.357 Sum_probs=92.2
Q ss_pred CEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCc-cCCCCCccchhhcCCccccccccccccCCCCCcEEEccc
Q 017912 155 TVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPA-DFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSM 233 (364)
Q Consensus 155 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 233 (364)
++++++++.++ .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|++++..|..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777775 56654432 777777777777654443 367777777777777777766677777777777777777
Q ss_pred CccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCcccc
Q 017912 234 NQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNI 288 (364)
Q Consensus 234 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 288 (364)
|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 7777666666777777777777777777666777777777777777777776543
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=4.6e-19 Score=177.92 Aligned_cols=220 Identities=21% Similarity=0.247 Sum_probs=113.6
Q ss_pred CCCCEEecCCCCCCcccCccccCCCCCCCE-----EEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcCCC
Q 017912 103 DTLSTLVIADWKGISGQLPSCITSIASLRV-----LDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSS 177 (364)
Q Consensus 103 ~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~-----L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 177 (364)
+.++.|++.+ +.+.. .+..+.....|+. +++..|.+. ..+..+..++.|++|+|++|.+. .+|..+.++++
T Consensus 173 ~~~~~l~L~~-n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFA-NGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeC-CCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 4566777763 55443 2332222222222 222333333 45667788888888888888887 77777778888
Q ss_pred CCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccC
Q 017912 178 LKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDS 257 (364)
Q Consensus 178 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 257 (364)
|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..++++++|++|++++|.++ .+|..++.+++|++|+|++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 888888888888 77888888888888888888888 77888888888888888888886 6677788888888888888
Q ss_pred CcCCcccchhhhCCC-CCCEEEcccCCCccccCccccCCCCCCEEEccCC--------cCCCCcchhcccCCCCCeEEcc
Q 017912 258 NLLSGKIPSTLLSNT-GMGILNLSRNALGGNIPDVFGSKSYFMALDLSYN--------NLKGPIPGSLSSSAYIGHLDLS 328 (364)
Q Consensus 258 n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n--------~l~~~~~~~l~~l~~L~~L~l~ 328 (364)
|.+++.+|..+.... .+..+++++|.+++.+|.. |+.|++++| .+.+..+..+..+..+....++
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls 399 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLS 399 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------------------------------------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeee
Confidence 888887777665432 1224678888888777653 445556655 3333333444555666667777
Q ss_pred CCcCccc
Q 017912 329 HNHLCGP 335 (364)
Q Consensus 329 ~N~l~g~ 335 (364)
+|.+.+.
T Consensus 400 ~Nil~~~ 406 (727)
T 4b8c_D 400 YNTLCQH 406 (727)
T ss_dssp --CCCGG
T ss_pred ccccccc
Confidence 7766543
No 121
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=2.9e-19 Score=175.82 Aligned_cols=132 Identities=11% Similarity=0.085 Sum_probs=83.1
Q ss_pred CCCCcEEEcccCccccccchhhh-CCCCCCEEEcc--C----CcCCc-----ccchhhhCCCCCCEEEcccCCCccccCc
Q 017912 223 MYRLADLDLSMNQISGPIPDILG-KMLVLSTLNLD--S----NLLSG-----KIPSTLLSNTGMGILNLSRNALGGNIPD 290 (364)
Q Consensus 223 l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~--~----n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 290 (364)
+++|++|.+..+.+++.....+. .+++|+.|+++ + +.+++ .++..+..+++|++|++++ .+++..+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 45556665555555544444443 46677777776 2 34441 1122245566777777766 55554444
Q ss_pred cccC-CCCCCEEEccCCcCCCCcchhc-ccCCCCCeEEccCCcCcccCC--CCCCCCCCCcccccCCCC
Q 017912 291 VFGS-KSYFMALDLSYNNLKGPIPGSL-SSSAYIGHLDLSHNHLCGPIP--VGSPFDHLEASSFDSNDC 355 (364)
Q Consensus 291 ~l~~-~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~N~l~g~ip--~~~~~~~l~~l~l~~n~~ 355 (364)
.+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+ ....+++|+.|++++|+.
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 4443 7788888888888876555555 568889999999888854322 123577888888888875
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=138.09 Aligned_cols=130 Identities=19% Similarity=0.253 Sum_probs=73.3
Q ss_pred EEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCc
Q 017912 228 DLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNN 307 (364)
Q Consensus 228 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 307 (364)
.+++++|.++ .+|..+ .++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4455555544 333322 235556666666555 445555555666666666666665555556666666666666666
Q ss_pred CCCCcchhcccCCCCCeEEccCCcCcccCCC-CCCCCCCCcccccCCCCCCCCCC
Q 017912 308 LKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV-GSPFDHLEASSFDSNDCLCGNPL 361 (364)
Q Consensus 308 l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~-~~~~~~l~~l~l~~n~~~c~~~~ 361 (364)
+++..+..+..+++|+.|++++|++++..+. ...+++|+.+++.+|++.|+|.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 6655555566666666666666666543332 23455666666666666666653
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=7.8e-17 Score=132.20 Aligned_cols=132 Identities=20% Similarity=0.127 Sum_probs=69.1
Q ss_pred CCCCEEEccCCcCC-CccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEE
Q 017912 176 SSLKHLDLSNNQLS-GKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLN 254 (364)
Q Consensus 176 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 254 (364)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+ ..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~------------------------~~l~~L~~L~ 77 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL------------------------PKLPKLKKLE 77 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC------------------------CCCSSCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh------------------------ccCCCCCEEE
Confidence 45666666666654 44454445555555555555554432 334 4444555555
Q ss_pred ccCCcCCcccchhhhCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCCcCCCCcc---hhcccCCCCCeEEccCC
Q 017912 255 LDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNI-PDVFGSKSYFMALDLSYNNLKGPIP---GSLSSSAYIGHLDLSHN 330 (364)
Q Consensus 255 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~N 330 (364)
+++|.+++.+|..+..+++|++|++++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|
T Consensus 78 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 5555554434444444555555555555555421 1445555666666666666654333 35556666666666666
Q ss_pred cCc
Q 017912 331 HLC 333 (364)
Q Consensus 331 ~l~ 333 (364)
.+.
T Consensus 158 ~~~ 160 (168)
T 2ell_A 158 EDQ 160 (168)
T ss_dssp TSC
T ss_pred Chh
Confidence 554
No 124
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=7.1e-19 Score=172.98 Aligned_cols=98 Identities=22% Similarity=0.263 Sum_probs=55.1
Q ss_pred CCcccccCcccc-CCCCCCEEecCCCCCCccc-CccccCCCCCCCEEEccCCcCCCCcCccc----cCCCCCCEEEcccC
Q 017912 89 GYMTGSINPAIC-QLDTLSTLVIADWKGISGQ-LPSCITSIASLRVLDLVGNKLSGKIPDDI----GNLQKLTVLNLADN 162 (364)
Q Consensus 89 ~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~L~~n 162 (364)
+.+++..+..+. .+++|++|+++++..++.. ++..+..+++|++|++++|.+++..+..+ ..+++|++|++++|
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~ 194 (594)
T 2p1m_B 115 MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL 194 (594)
T ss_dssp CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTC
T ss_pred cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEeccc
Confidence 555555555554 5677777777743244432 33334467777777777777664433333 25567777777776
Q ss_pred C--CCCC-CchhhhcCCCCCEEEccCC
Q 017912 163 A--VSGE-IPSSLVRLSSLKHLDLSNN 186 (364)
Q Consensus 163 ~--l~~~-~p~~l~~l~~L~~L~l~~n 186 (364)
. +... +...+.++++|++|++++|
T Consensus 195 ~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 195 ASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 5 2211 1112234567777777666
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=1.3e-16 Score=130.90 Aligned_cols=134 Identities=19% Similarity=0.173 Sum_probs=97.7
Q ss_pred CCCCCCEEEcccCCCC-CCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcE
Q 017912 150 NLQKLTVLNLADNAVS-GEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLAD 228 (364)
Q Consensus 150 ~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 228 (364)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3478999999999998 78888889999999999999999855 67888888888888888887666666666777777
Q ss_pred EEcccCcccccc-chhhhCCCCCCEEEccCCcCCcccc---hhhhCCCCCCEEEcccCCCc
Q 017912 229 LDLSMNQISGPI-PDILGKMLVLSTLNLDSNLLSGKIP---STLLSNTGMGILNLSRNALG 285 (364)
Q Consensus 229 L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~n~l~ 285 (364)
|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 777777766432 2455666666666666666653332 24555566666666666554
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=8.4e-17 Score=129.27 Aligned_cols=125 Identities=18% Similarity=0.129 Sum_probs=62.9
Q ss_pred cchhhcCCcccc-ccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcc
Q 017912 202 LSRALLRGNKLT-GSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLS 280 (364)
Q Consensus 202 L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 280 (364)
|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 334444444433 33343344444444444444444433 344445555555555555554445444445555555555
Q ss_pred cCCCccc-cCccccCCCCCCEEEccCCcCCCCcc---hhcccCCCCCeEEcc
Q 017912 281 RNALGGN-IPDVFGSKSYFMALDLSYNNLKGPIP---GSLSSSAYIGHLDLS 328 (364)
Q Consensus 281 ~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~ 328 (364)
+|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.||++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555542 23445555666666666666654333 345556666666654
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=5e-16 Score=128.51 Aligned_cols=133 Identities=23% Similarity=0.229 Sum_probs=98.5
Q ss_pred cchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccc
Q 017912 202 LSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSR 281 (364)
Q Consensus 202 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 281 (364)
.+.+++++++++ .+|..+ .++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 456777777776 445433 25788888888888766666677788888888888888755555667778888888888
Q ss_pred CCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCC
Q 017912 282 NALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIP 337 (364)
Q Consensus 282 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip 337 (364)
|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88887766667778888888888888876555556777888888888888877655
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=2.1e-16 Score=126.90 Aligned_cols=127 Identities=24% Similarity=0.219 Sum_probs=78.8
Q ss_pred CCCCEEEccCCcCC-CccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEE
Q 017912 176 SSLKHLDLSNNQLS-GKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLN 254 (364)
Q Consensus 176 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 254 (364)
+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555554 44455555555555555555555533 4455666677777777776655666666677777777
Q ss_pred ccCCcCCcc-cchhhhCCCCCCEEEcccCCCccccC---ccccCCCCCCEEEcc
Q 017912 255 LDSNLLSGK-IPSTLLSNTGMGILNLSRNALGGNIP---DVFGSKSYFMALDLS 304 (364)
Q Consensus 255 l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~l~ 304 (364)
+++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777777642 23566677777777777777775554 356667777777765
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=8.6e-16 Score=127.07 Aligned_cols=134 Identities=22% Similarity=0.231 Sum_probs=104.3
Q ss_pred CCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEcc
Q 017912 177 SLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLD 256 (364)
Q Consensus 177 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 256 (364)
..+.+++++++++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++..+..++.+++|++|+++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 3467888888876 455433 3678888888888886666667888888888888888886666667888888888888
Q ss_pred CCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcc
Q 017912 257 SNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIP 313 (364)
Q Consensus 257 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 313 (364)
+|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 888886666667788888888888888887666667788888888888888887554
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=9.6e-17 Score=146.34 Aligned_cols=195 Identities=10% Similarity=-0.017 Sum_probs=121.4
Q ss_pred CCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccc----cccccccccCCC--
Q 017912 151 LQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKL----TGSIPDSIGNMY-- 224 (364)
Q Consensus 151 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~----~~~~~~~l~~l~-- 224 (364)
+++|+.+++.+ .++..-...|.++++|+++++++|.+....+..|..+.++..+....+.. .......+.++.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77777777777 66644445667777788888877777655556676666666665544211 000111122222
Q ss_pred ------------------------CCcEEEcccCccccccchhh-hCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEc
Q 017912 225 ------------------------RLADLDLSMNQISGPIPDIL-GKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNL 279 (364)
Q Consensus 225 ------------------------~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 279 (364)
+++.+.+.++-.. .....+ ..+++|+.+++++|.++......|..+++|+++++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 2233333322111 111111 23788888888888887555567788888888888
Q ss_pred ccCCCccccCccccCCCCCC-EEEccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCC-CCCCCCCCccc
Q 017912 280 SRNALGGNIPDVFGSKSYFM-ALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPV-GSPFDHLEASS 349 (364)
Q Consensus 280 ~~n~l~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~-~~~~~~l~~l~ 349 (364)
.+| ++...+..|.++++|+ .+++.+ .++...+.+|.++++|+.+++++|++...-+. ...+++|+.++
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 887 7767777888888888 888888 66655567888888888888888887744332 23445555543
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=127.61 Aligned_cols=128 Identities=27% Similarity=0.289 Sum_probs=79.6
Q ss_pred CEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCC
Q 017912 179 KHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSN 258 (364)
Q Consensus 179 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 258 (364)
++++++++.++ .+|..+. ++|++|++++|.++ .+|..+.++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56777777766 4554432 46666666666665 45556666666666666666666555555666666666666666
Q ss_pred cCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCC
Q 017912 259 LLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKG 310 (364)
Q Consensus 259 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 310 (364)
.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 6665555556666666666666666665555555666666666666666543
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=1.4e-14 Score=118.99 Aligned_cols=109 Identities=21% Similarity=0.187 Sum_probs=72.8
Q ss_pred CcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccC
Q 017912 226 LADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSY 305 (364)
Q Consensus 226 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 305 (364)
.+++++++|.++ .+|..+ .++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456777777776 345433 36677777777777766566667777777777777777766666666777777777777
Q ss_pred CcCCCCcchhcccCCCCCeEEccCCcCcccCC
Q 017912 306 NNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIP 337 (364)
Q Consensus 306 n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip 337 (364)
|++++..+..+..+++|++|++++|++....+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 77775555556667777777777777665443
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=2.5e-15 Score=136.89 Aligned_cols=243 Identities=14% Similarity=0.141 Sum_probs=160.5
Q ss_pred CCCCCCEEecCCCCCCcccCccccCC-CCCCCEEEccCCcCC--CCcCccccCCCCCCEEEcccCCCCCCCchhhhc---
Q 017912 101 QLDTLSTLVIADWKGISGQLPSCITS-IASLRVLDLVGNKLS--GKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVR--- 174 (364)
Q Consensus 101 ~l~~L~~L~l~~~~~l~~~~p~~l~~-l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~--- 174 (364)
.+.+++.|.+++ .+...-...+.. +++|++|||++|.+. ..... .++.++.+.+..+.+. ...|.+
T Consensus 23 ~~~~l~~L~l~g--~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~ 94 (329)
T 3sb4_A 23 EANSITHLTLTG--KLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVN 94 (329)
T ss_dssp HHHHCSEEEEEE--EECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEET
T ss_pred hhCceeEEEEec--cccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhccccc
Confidence 366788888874 222221122333 788999999999987 22211 2222455555555433 345566
Q ss_pred -----CCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCcc----ccccchhhh
Q 017912 175 -----LSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQI----SGPIPDILG 245 (364)
Q Consensus 175 -----l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~~~l~ 245 (364)
+++|+++++.+ .++...+..|..+++|+.+++.+|.+....+..|....++.++....+.. .......+.
T Consensus 95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 89999999998 77756667799999999999999988766667777777777776554221 111111222
Q ss_pred CCCCC--------------------------CEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCC
Q 017912 246 KMLVL--------------------------STLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFM 299 (364)
Q Consensus 246 ~l~~L--------------------------~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 299 (364)
.+..| ..+.+.++-...........+++|+++++++|+++......|.++++|+
T Consensus 174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 23333 3333333321111111112378999999999999988888999999999
Q ss_pred EEEccCCcCCCCcchhcccCCCCC-eEEccCCcCcccCCC--CCCCCCCCcccccCCCC
Q 017912 300 ALDLSYNNLKGPIPGSLSSSAYIG-HLDLSHNHLCGPIPV--GSPFDHLEASSFDSNDC 355 (364)
Q Consensus 300 ~L~l~~n~l~~~~~~~l~~l~~L~-~L~l~~N~l~g~ip~--~~~~~~l~~l~l~~n~~ 355 (364)
.+++.+| ++.....+|.++++|+ .+++.+ .++ .|+. ...+.+|+.+++.+|..
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCC
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCcc
Confidence 9999998 7766678899999999 999998 555 3332 24677888998877654
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=8.7e-15 Score=120.91 Aligned_cols=104 Identities=18% Similarity=0.243 Sum_probs=42.9
Q ss_pred CCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccch--hhhCCCCCCEEE
Q 017912 177 SLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPD--ILGKMLVLSTLN 254 (364)
Q Consensus 177 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~ 254 (364)
+|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++|++++|.++ .+|. .+..+++|++|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 444444444444421 23334444444444444443221122234444444444444443 2222 344444444444
Q ss_pred ccCCcCCcccchh----hhCCCCCCEEEcccCCC
Q 017912 255 LDSNLLSGKIPST----LLSNTGMGILNLSRNAL 284 (364)
Q Consensus 255 l~~n~l~~~~~~~----~~~~~~L~~L~l~~n~l 284 (364)
+++|.++ .+|.. +..+++|+.|++++|..
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 4444444 22322 34444444444444443
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=4e-17 Score=137.73 Aligned_cols=112 Identities=25% Similarity=0.270 Sum_probs=46.5
Q ss_pred hhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCC
Q 017912 171 SLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVL 250 (364)
Q Consensus 171 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 250 (364)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 44444444444444444432 22 3333333333433333333 233333333444444444444443 22 34444444
Q ss_pred CEEEccCCcCCcccc-hhhhCCCCCCEEEcccCCCccc
Q 017912 251 STLNLDSNLLSGKIP-STLLSNTGMGILNLSRNALGGN 287 (364)
Q Consensus 251 ~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~ 287 (364)
++|++++|.+++..+ ..+..+++|++|++++|.+++.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 555555444442111 2344444444444444444433
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=8.4e-15 Score=120.99 Aligned_cols=104 Identities=19% Similarity=0.134 Sum_probs=56.0
Q ss_pred CCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCc--cccCCCCCCEEE
Q 017912 225 RLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPD--VFGSKSYFMALD 302 (364)
Q Consensus 225 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~l~~~~~L~~L~ 302 (364)
+|++|++++|.+++. ..++.+++|++|++++|.+++..+..+..+++|++|++++|+++. +|. .+..+++|++|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEE
Confidence 455555555554432 344455555555555555553322333555566666666666542 232 455566666666
Q ss_pred ccCCcCCCCcch----hcccCCCCCeEEccCCcC
Q 017912 303 LSYNNLKGPIPG----SLSSSAYIGHLDLSHNHL 332 (364)
Q Consensus 303 l~~n~l~~~~~~----~l~~l~~L~~L~l~~N~l 332 (364)
+++|.++ .+|. .+..+++|+.||+++|..
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 6666665 3343 256666666666666654
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=3.1e-17 Score=138.43 Aligned_cols=149 Identities=21% Similarity=0.212 Sum_probs=91.0
Q ss_pred hcCCCCCEEEccCCcCCCccCc------cCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhC
Q 017912 173 VRLSSLKHLDLSNNQLSGKIPA------DFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGK 246 (364)
Q Consensus 173 ~~l~~L~~L~l~~n~~~~~~~~------~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 246 (364)
.....++.++++.+.+.+..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3445555566666666555544 56666677777777776664 45 5666667777777777666 45555555
Q ss_pred CCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccC-ccccCCCCCCEEEccCCcCCCCcch----------h
Q 017912 247 MLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIP-DVFGSKSYFMALDLSYNNLKGPIPG----------S 315 (364)
Q Consensus 247 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~----------~ 315 (364)
+++|++|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|. .
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 6667777777776664 33 45556666677777666664322 3456666666666666666544333 2
Q ss_pred cccCCCCCeEE
Q 017912 316 LSSSAYIGHLD 326 (364)
Q Consensus 316 l~~l~~L~~L~ 326 (364)
+..+++|+.||
T Consensus 170 ~~~l~~L~~Ld 180 (198)
T 1ds9_A 170 VKRLPNLKKLD 180 (198)
T ss_dssp HHHCSSCSEEC
T ss_pred HHhCCCcEEEC
Confidence 55666666665
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=3.5e-14 Score=116.99 Aligned_cols=105 Identities=19% Similarity=0.191 Sum_probs=66.9
Q ss_pred cEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCC
Q 017912 227 ADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYN 306 (364)
Q Consensus 227 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n 306 (364)
+.+++++|.++ .+|..+ .++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56667776664 445443 256677777777776655666666666777777777766555555566666777777777
Q ss_pred cCCCCcchhcccCCCCCeEEccCCcCcc
Q 017912 307 NLKGPIPGSLSSSAYIGHLDLSHNHLCG 334 (364)
Q Consensus 307 ~l~~~~~~~l~~l~~L~~L~l~~N~l~g 334 (364)
++++..+..+..+++|+.|++++|++..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 6665444446666666666666666653
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=6e-13 Score=124.22 Aligned_cols=225 Identities=10% Similarity=0.091 Sum_probs=171.6
Q ss_pred CccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCchhhhcC
Q 017912 96 NPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRL 175 (364)
Q Consensus 96 ~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 175 (364)
..+|.++ +|+.+.+. ++++..-...|.++ +|+.+.+.. .+.......|.++++|+.+++..|.++ .++......
T Consensus 129 ~~aF~~~-~L~~i~l~--~~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~ 202 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLN--EGLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVY 202 (401)
T ss_dssp TTTTTTC-CCSEEECC--TTCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTT
T ss_pred HhhcccC-CccEEEeC--CCccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEee
Confidence 3456665 69999987 44665555667774 699999986 666555667889999999999999888 555554457
Q ss_pred CCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEc
Q 017912 176 SSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNL 255 (364)
Q Consensus 176 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 255 (364)
.+|+.+.+..+ +.......|.++++|+.+.+..+ ++..-...|.+ .+|+.+.+. +.++.....+|.++++|+.+.+
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTT 278 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEE
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEe
Confidence 89999999854 65455667889999999999875 44333455666 789999994 4566555678889999999999
Q ss_pred cCCcCC-----cccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCC
Q 017912 256 DSNLLS-----GKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHN 330 (364)
Q Consensus 256 ~~n~l~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N 330 (364)
.++.+. ......|..+++|+.+++. ++++......|.++++|+.+.+..+ ++.....+|.++ +|+.+++++|
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 888764 2445678888999999998 4577677788999999999999665 654556778888 9999999998
Q ss_pred cCc
Q 017912 331 HLC 333 (364)
Q Consensus 331 ~l~ 333 (364)
.+.
T Consensus 356 ~~~ 358 (401)
T 4fdw_A 356 TPP 358 (401)
T ss_dssp SCC
T ss_pred CCc
Confidence 765
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.50 E-value=1.2e-12 Score=122.19 Aligned_cols=231 Identities=12% Similarity=0.051 Sum_probs=176.8
Q ss_pred cccccCccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEccCCcCCCCcCccccCCCCCCEEEcccCCCCCCCch
Q 017912 91 MTGSINPAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPS 170 (364)
Q Consensus 91 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 170 (364)
++..-..+|.++ .|+.+.+. +.+...-...|.++++|+.+++..|.++......|. +.+|+.+.+..+ ++..-..
T Consensus 146 i~~I~~~aF~~~-~L~~i~lp--~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~ 220 (401)
T 4fdw_A 146 LKSIGDMAFFNS-TVQEIVFP--STLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQ 220 (401)
T ss_dssp CCEECTTTTTTC-CCCEEECC--TTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTT
T ss_pred ccEECHHhcCCC-CceEEEeC--CCccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhh
Confidence 333334456664 69999998 466655667899999999999999999844444454 799999999854 6645566
Q ss_pred hhhcCCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccc-----cccchhhh
Q 017912 171 SLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQIS-----GPIPDILG 245 (364)
Q Consensus 171 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~l~ 245 (364)
.|.++++|+.+++..+ ++......|.+ .+|+.+.+.. .++..-...|.++++|+.+++.++.+. ......|.
T Consensus 221 aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~ 297 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE 297 (401)
T ss_dssp TTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT
T ss_pred HhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh
Confidence 7889999999999875 45344456666 7899999944 455455678899999999999988764 34456888
Q ss_pred CCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCC-CCCe
Q 017912 246 KMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSA-YIGH 324 (364)
Q Consensus 246 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~ 324 (364)
.+++|+.+.+.. .++......|.++++|+.+.+..+ ++.....+|.++ +|+.+++.+|.+.......+..++ +++.
T Consensus 298 ~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~ 374 (401)
T 4fdw_A 298 GCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITV 374 (401)
T ss_dssp TCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCE
T ss_pred CCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccE
Confidence 999999999994 466455677888999999999665 776777889999 999999999988765566677774 7888
Q ss_pred EEccCCcC
Q 017912 325 LDLSHNHL 332 (364)
Q Consensus 325 L~l~~N~l 332 (364)
+.+..+.+
T Consensus 375 l~vp~~~~ 382 (401)
T 4fdw_A 375 IRVPAESV 382 (401)
T ss_dssp EEECGGGH
T ss_pred EEeCHHHH
Confidence 88877653
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=1.7e-13 Score=112.44 Aligned_cols=109 Identities=23% Similarity=0.197 Sum_probs=90.2
Q ss_pred ccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcc
Q 017912 201 MLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLS 280 (364)
Q Consensus 201 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 280 (364)
..+++++++|+++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3567888888887 4666553 788999999999988878888889999999999999986666667888899999999
Q ss_pred cCCCccccCccccCCCCCCEEEccCCcCCCCc
Q 017912 281 RNALGGNIPDVFGSKSYFMALDLSYNNLKGPI 312 (364)
Q Consensus 281 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 312 (364)
+|++++..+..+..+++|++|++++|.++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99998777777888899999999999887653
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=4.2e-13 Score=110.50 Aligned_cols=106 Identities=22% Similarity=0.206 Sum_probs=88.4
Q ss_pred chhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccC
Q 017912 203 SRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRN 282 (364)
Q Consensus 203 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 282 (364)
+.+++++|+++ .+|..+. ++|++|++++|.+++..|..++.+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888886 6676654 78999999999998888888889999999999999998655556678899999999999
Q ss_pred CCccccCccccCCCCCCEEEccCCcCCCC
Q 017912 283 ALGGNIPDVFGSKSYFMALDLSYNNLKGP 311 (364)
Q Consensus 283 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 311 (364)
++++..+..+..+++|++|++++|.+...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 99877666788899999999999988754
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.43 E-value=3.7e-13 Score=123.31 Aligned_cols=103 Identities=20% Similarity=0.204 Sum_probs=61.7
Q ss_pred EEEcccC-ccccccchhhhCCCCCCEEEccC-CcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccC
Q 017912 228 DLDLSMN-QISGPIPDILGKMLVLSTLNLDS-NLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSY 305 (364)
Q Consensus 228 ~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 305 (364)
.++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455555 555 3555 66666666666664 666655555566666666666666666666666666666666666666
Q ss_pred CcCCCCcchhcccCCCCCeEEccCCcCc
Q 017912 306 NNLKGPIPGSLSSSAYIGHLDLSHNHLC 333 (364)
Q Consensus 306 n~l~~~~~~~l~~l~~L~~L~l~~N~l~ 333 (364)
|+|++..+..+..++ |+.|++.+|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666644333343333 666666666654
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.41 E-value=1.5e-14 Score=133.83 Aligned_cols=170 Identities=21% Similarity=0.245 Sum_probs=81.0
Q ss_pred CCCCEEEccCCcCCCCcCcccc-----CCCCCCEEEcccCCCCCCCchhhh-cCCCCCEEEccCCcCCCccCccCCCCCc
Q 017912 128 ASLRVLDLVGNKLSGKIPDDIG-----NLQKLTVLNLADNAVSGEIPSSLV-RLSSLKHLDLSNNQLSGKIPADFGNLKM 201 (364)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 201 (364)
++|++|++++|.++......+. ..++|++|+|++|.++......+. .+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L----- 146 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL----- 146 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH-----
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH-----
Confidence 4566666666666533222221 124566666666655432222221 23445555555555442211111
Q ss_pred cchhhcCCccccccccccc-cCCCCCcEEEcccCccccc----cchhhhCCCCCCEEEccCCcCCcc----cchhhhCCC
Q 017912 202 LSRALLRGNKLTGSIPDSI-GNMYRLADLDLSMNQISGP----IPDILGKMLVLSTLNLDSNLLSGK----IPSTLLSNT 272 (364)
Q Consensus 202 L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~~ 272 (364)
...+ ...++|++|++++|.++.. ++..+...++|++|++++|.+++. ++..+...+
T Consensus 147 ---------------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 147 ---------------RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp ---------------HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred ---------------HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 0111 1234555566666555432 223334555666666666665532 133344455
Q ss_pred CCCEEEcccCCCccc----cCccccCCCCCCEEEccCCcCCCCcchhcc
Q 017912 273 GMGILNLSRNALGGN----IPDVFGSKSYFMALDLSYNNLKGPIPGSLS 317 (364)
Q Consensus 273 ~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 317 (364)
+|++|++++|.+++. +...+...++|++|++++|.|++.....+.
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 666666666666542 222333455666666666666544444443
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=3.5e-14 Score=131.31 Aligned_cols=135 Identities=20% Similarity=0.241 Sum_probs=96.8
Q ss_pred CccchhhcCCccccccccccc-cCCCCCcEEEcccCccccccchhh-----hCCCCCCEEEccCCcCCcc----cchhhh
Q 017912 200 KMLSRALLRGNKLTGSIPDSI-GNMYRLADLDLSMNQISGPIPDIL-----GKMLVLSTLNLDSNLLSGK----IPSTLL 269 (364)
Q Consensus 200 ~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~----~~~~~~ 269 (364)
++|++|++++|.++......+ ..+++|++|++++|.++......+ ...++|++|++++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 345555555554432222222 234468888999988875544444 2468899999999999742 344557
Q ss_pred CCCCCCEEEcccCCCcccc----CccccCCCCCCEEEccCCcCCCC----cchhcccCCCCCeEEccCCcCcc
Q 017912 270 SNTGMGILNLSRNALGGNI----PDVFGSKSYFMALDLSYNNLKGP----IPGSLSSSAYIGHLDLSHNHLCG 334 (364)
Q Consensus 270 ~~~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~N~l~g 334 (364)
..++|++|++++|.+++.. ...+...++|++|++++|.+++. ++..+...++|++||+++|.++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 7899999999999998643 55667788999999999999863 34455677999999999999864
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.26 E-value=2e-11 Score=111.79 Aligned_cols=106 Identities=22% Similarity=0.104 Sum_probs=91.2
Q ss_pred chhhcCCc-cccccccccccCCCCCcEEEccc-CccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcc
Q 017912 203 SRALLRGN-KLTGSIPDSIGNMYRLADLDLSM-NQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLS 280 (364)
Q Consensus 203 ~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 280 (364)
..++++++ +++ .+|. +..+++|++|++++ |.+++..+..|+.+++|+.|+|++|.+++..|..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34577777 777 5788 99999999999996 99988877889999999999999999998888889999999999999
Q ss_pred cCCCccccCccccCCCCCCEEEccCCcCCCC
Q 017912 281 RNALGGNIPDVFGSKSYFMALDLSYNNLKGP 311 (364)
Q Consensus 281 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 311 (364)
+|++++..+..+..++ |+.|++.+|.+...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9999977776666665 99999999999853
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.07 E-value=1e-10 Score=107.27 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=47.9
Q ss_pred CCCCCCEEEccCCcCCcccchhhh---CCCCCCEEEcccCCCcccc----CccccCCCCCCEEEccCCcCCCCcchhccc
Q 017912 246 KMLVLSTLNLDSNLLSGKIPSTLL---SNTGMGILNLSRNALGGNI----PDVFGSKSYFMALDLSYNNLKGPIPGSLSS 318 (364)
Q Consensus 246 ~l~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 318 (364)
.+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+++.. +..+..+++|+.|++++|.+++.....+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 356677777766666543332232 3466777777777776532 222344567777777777766544444433
Q ss_pred -CCCCCeEEccCCc
Q 017912 319 -SAYIGHLDLSHNH 331 (364)
Q Consensus 319 -l~~L~~L~l~~N~ 331 (364)
+ ...++++++.
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3456666655
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.01 E-value=2.6e-10 Score=104.62 Aligned_cols=112 Identities=11% Similarity=0.074 Sum_probs=77.0
Q ss_pred CCCCcEEEcccCccccccchhhh--CCCCCCEEEccC--CcCCcc-----cchhh--hCCCCCCEEEcccCCCccccCcc
Q 017912 223 MYRLADLDLSMNQISGPIPDILG--KMLVLSTLNLDS--NLLSGK-----IPSTL--LSNTGMGILNLSRNALGGNIPDV 291 (364)
Q Consensus 223 l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~--n~l~~~-----~~~~~--~~~~~L~~L~l~~n~l~~~~~~~ 291 (364)
.++|++|++..+.++......+. .+++|++|+|+. +...+. +...+ ..+++|++|++.+|.+.+..+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 56788888877777654444444 678888888753 211111 11122 24789999999999998644333
Q ss_pred c---cCCCCCCEEEccCCcCCCCc----chhcccCCCCCeEEccCCcCcc
Q 017912 292 F---GSKSYFMALDLSYNNLKGPI----PGSLSSSAYIGHLDLSHNHLCG 334 (364)
Q Consensus 292 l---~~~~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~N~l~g 334 (364)
+ ..+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++.
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 3 35789999999999998643 3444567999999999998763
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.98 E-value=2.4e-08 Score=92.88 Aligned_cols=61 Identities=11% Similarity=0.172 Sum_probs=32.6
Q ss_pred hhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCC
Q 017912 268 LLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHN 330 (364)
Q Consensus 268 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N 330 (364)
+..+.+|+.+.+..+ ++.....+|.++.+|+.+++.++ ++.....+|.++.+|+.+++..|
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 344555666655443 44344445666666666666533 43333455556666666666544
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.92 E-value=1.9e-08 Score=93.66 Aligned_cols=148 Identities=11% Similarity=0.040 Sum_probs=97.1
Q ss_pred CCCCCEEEccCCcCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEE
Q 017912 175 LSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLN 254 (364)
Q Consensus 175 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 254 (364)
..+|+.+.+.... +......+..+..++.+.+..+... .....+.....++.+....+.+. ...+..+.+|+.+.
T Consensus 229 ~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 229 KTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVK 303 (394)
T ss_dssp TCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEE
T ss_pred cCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccc
Confidence 3455555544321 2122334556666666666554332 33345566667777666554322 23566788899998
Q ss_pred ccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCC
Q 017912 255 LDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHN 330 (364)
Q Consensus 255 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N 330 (364)
+..+ ++......|.++.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++.....+|.++.+|+.+++..+
T Consensus 304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 8765 44344566788899999999754 66666778999999999999876 66455678889999999998754
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.88 E-value=6.5e-08 Score=89.95 Aligned_cols=108 Identities=8% Similarity=0.131 Sum_probs=64.8
Q ss_pred ccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCC
Q 017912 220 IGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFM 299 (364)
Q Consensus 220 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 299 (364)
+.++..|+.+.+..+.. .....++.++.+|+.+.+.. .++......|.++.+|+.+++..+ ++.....+|.++.+|+
T Consensus 261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 34445555555544322 12334455666666666643 333233345666777777777653 5545566777778888
Q ss_pred EEEccCCcCCCCcchhcccCCCCCeEEccCCc
Q 017912 300 ALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNH 331 (364)
Q Consensus 300 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~ 331 (364)
.+.+..+ ++.....+|.++.+|+.+++.++.
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 8877654 544445677777888888877764
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=8.2e-09 Score=85.52 Aligned_cols=116 Identities=15% Similarity=0.199 Sum_probs=78.7
Q ss_pred ccccCCCCCcEEEcccC-ccccc----cchhhhCCCCCCEEEccCCcCCcc----cchhhhCCCCCCEEEcccCCCccc-
Q 017912 218 DSIGNMYRLADLDLSMN-QISGP----IPDILGKMLVLSTLNLDSNLLSGK----IPSTLLSNTGMGILNLSRNALGGN- 287 (364)
Q Consensus 218 ~~l~~l~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~- 287 (364)
..+...++|++|++++| .+... +...+...++|++|++++|.+... +...+...++|++|+|++|.+++.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34455667777777777 66533 334455567788888888877642 233445557788888888888753
Q ss_pred ---cCccccCCCCCCEEEc--cCCcCCCC----cchhcccCCCCCeEEccCCcCc
Q 017912 288 ---IPDVFGSKSYFMALDL--SYNNLKGP----IPGSLSSSAYIGHLDLSHNHLC 333 (364)
Q Consensus 288 ---~~~~l~~~~~L~~L~l--~~n~l~~~----~~~~l~~l~~L~~L~l~~N~l~ 333 (364)
+...+...+.|++|++ ++|.+... +...+...++|+.|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455666778888888 77888753 3445566688888888888764
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.65 E-value=1.1e-06 Score=81.64 Aligned_cols=131 Identities=9% Similarity=0.167 Sum_probs=90.5
Q ss_pred cCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCC
Q 017912 195 DFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGM 274 (364)
Q Consensus 195 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 274 (364)
.|..+.+|+.+.+..+... .....+.++..|+.+.+.. .++.....+|.++.+|+.+.+..+ ++......|.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 4667777888777654332 3345677889999999864 455455567889999999999865 553445678889999
Q ss_pred CEEEcccCCCccccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCcC
Q 017912 275 GILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHL 332 (364)
Q Consensus 275 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l 332 (364)
+++.+..+ ++.....+|.++.+|+.+++.++... ...+.....|+.+.+..|.+
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 99999754 66566778999999999999987643 24566778888888776543
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.64 E-value=1.4e-09 Score=95.07 Aligned_cols=79 Identities=29% Similarity=0.439 Sum_probs=38.1
Q ss_pred CCCCCCEEEcccCCCCC--CCchhhhcCCCCCEEEccCCcCCCccCccCCCCC--ccchhhcCCcccccccc-------c
Q 017912 150 NLQKLTVLNLADNAVSG--EIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLK--MLSRALLRGNKLTGSIP-------D 218 (364)
Q Consensus 150 ~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~-------~ 218 (364)
++++|++|+|++|.+++ .++..+..+++|++|+|++|.+.+. ..+..+. +|++|++.+|.+.+.+| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 34555555555555553 2233444555555555555555432 1122222 55555555555554333 2
Q ss_pred cccCCCCCcEEE
Q 017912 219 SIGNMYRLADLD 230 (364)
Q Consensus 219 ~l~~l~~L~~L~ 230 (364)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245566666665
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=3e-08 Score=82.06 Aligned_cols=119 Identities=18% Similarity=0.307 Sum_probs=66.5
Q ss_pred hhhcCCCCCEEEccCC-cCCCccCccCCCCCccchhhcCCccccccccccccCCCCCcEEEcccCccccc----cchhhh
Q 017912 171 SLVRLSSLKHLDLSNN-QLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSMNQISGP----IPDILG 245 (364)
Q Consensus 171 ~l~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~ 245 (364)
.+...++|++|++++| .+...... .+...+...++|++|++++|.+... +...+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~--------------------~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~ 90 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLK--------------------ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK 90 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHH--------------------HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHH--------------------HHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH
Confidence 3445667777777776 65422110 1122233445566666666665432 233344
Q ss_pred CCCCCCEEEccCCcCCcc----cchhhhCCCCCCEEEc--ccCCCccc----cCccccCCCCCCEEEccCCcCC
Q 017912 246 KMLVLSTLNLDSNLLSGK----IPSTLLSNTGMGILNL--SRNALGGN----IPDVFGSKSYFMALDLSYNNLK 309 (364)
Q Consensus 246 ~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l--~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~ 309 (364)
..++|++|++++|.+... +...+...++|++|++ ++|.+++. +...+...+.|++|++++|.+.
T Consensus 91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 456677777777766632 2344455567777777 66777643 2334445577777777777764
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.53 E-value=6.1e-06 Score=76.03 Aligned_cols=107 Identities=14% Similarity=0.110 Sum_probs=56.9
Q ss_pred ccCCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCC
Q 017912 220 IGNMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFM 299 (364)
Q Consensus 220 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 299 (364)
+.+...|+.+.+..+ ++.....++..+.+|+.+.+..+ +.......|..+.+|+.+.+.++.++......|.++.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 344445555555443 33233344455556666665433 2222233455566666666666666655555666666666
Q ss_pred EEEccCCcCCCCcchhcccCCCCCeEEccC
Q 017912 300 ALDLSYNNLKGPIPGSLSSSAYIGHLDLSH 329 (364)
Q Consensus 300 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 329 (364)
.+.+..+ ++.....+|.++.+|+.+.+..
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 6666543 4333344566666666665543
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.51 E-value=2.5e-08 Score=87.03 Aligned_cols=81 Identities=26% Similarity=0.205 Sum_probs=46.1
Q ss_pred hCCCCCCEEEccCCcCCc--ccchhhhCCCCCCEEEcccCCCcccc-CccccCCCCCCEEEccCCcCCCCcc-------h
Q 017912 245 GKMLVLSTLNLDSNLLSG--KIPSTLLSNTGMGILNLSRNALGGNI-PDVFGSKSYFMALDLSYNNLKGPIP-------G 314 (364)
Q Consensus 245 ~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~-------~ 314 (364)
.++++|+.|+|++|.+++ .++..+..+++|+.|+|++|++++.. ...+..+ +|++|++++|.+.+.+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 345666666666666665 33445556666666666666666431 1122223 66667777776665443 2
Q ss_pred hcccCCCCCeEE
Q 017912 315 SLSSSAYIGHLD 326 (364)
Q Consensus 315 ~l~~l~~L~~L~ 326 (364)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 355667776665
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.45 E-value=1.7e-05 Score=73.05 Aligned_cols=124 Identities=13% Similarity=0.089 Sum_probs=83.0
Q ss_pred CCCCCcEEEcccCccccccchhhhCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEE
Q 017912 222 NMYRLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMAL 301 (364)
Q Consensus 222 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 301 (364)
....|+.+.+..+ +.......+..+..|+.+.+..+ ++......+..+.+|+.+.+..+ ++......+..+.+|+.+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 3445666655443 22233445667778888888765 44344456777888999988654 555556678999999999
Q ss_pred EccCCcCCCCcchhcccCCCCCeEEccCCcCcccCCCC--CCCCCCCcccc
Q 017912 302 DLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVG--SPFDHLEASSF 350 (364)
Q Consensus 302 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~g~ip~~--~~~~~l~~l~l 350 (364)
.+.++.++.....+|.++.+|+.+++..+ ++ .|... ..+.+|+.+.+
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCC
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEE
Confidence 99998887666678889999999999754 32 23221 23445555554
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=1.2e-06 Score=71.18 Aligned_cols=83 Identities=11% Similarity=-0.043 Sum_probs=51.4
Q ss_pred CCcEEEcccCccccccchhhhCCCCCCEEEccCCc-CCcccchhhhCC----CCCCEEEcccCC-CccccCccccCCCCC
Q 017912 225 RLADLDLSMNQISGPIPDILGKMLVLSTLNLDSNL-LSGKIPSTLLSN----TGMGILNLSRNA-LGGNIPDVFGSKSYF 298 (364)
Q Consensus 225 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~----~~L~~L~l~~n~-l~~~~~~~l~~~~~L 298 (364)
.|++||++++.++......+..+++|++|++++|. +++..-..+..+ ++|++|++++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 56777777776665555556667777777777764 554333444443 357777777763 665444455666777
Q ss_pred CEEEccCCc
Q 017912 299 MALDLSYNN 307 (364)
Q Consensus 299 ~~L~l~~n~ 307 (364)
++|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777764
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=6.9e-07 Score=72.50 Aligned_cols=84 Identities=6% Similarity=-0.022 Sum_probs=69.8
Q ss_pred CCCCEEEccCCcCCcccchhhhCCCCCCEEEcccCC-CccccCccccCC----CCCCEEEccCCc-CCCCcchhcccCCC
Q 017912 248 LVLSTLNLDSNLLSGKIPSTLLSNTGMGILNLSRNA-LGGNIPDVFGSK----SYFMALDLSYNN-LKGPIPGSLSSSAY 321 (364)
Q Consensus 248 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~----~~L~~L~l~~n~-l~~~~~~~l~~l~~ 321 (364)
-.|++|+++++.++......+..+++|++|+|++|. +++..-..+..+ ++|++|++++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999999987666778889999999999995 776655556654 479999999985 88766677888999
Q ss_pred CCeEEccCCc
Q 017912 322 IGHLDLSHNH 331 (364)
Q Consensus 322 L~~L~l~~N~ 331 (364)
|+.|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999985
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.66 E-value=7.3e-05 Score=61.71 Aligned_cols=113 Identities=9% Similarity=0.121 Sum_probs=75.9
Q ss_pred ccCCCCCcEEEcccC-ccccc----cchhhhCCCCCCEEEccCCcCCcc----cchhhhCCCCCCEEEcccCCCccc---
Q 017912 220 IGNMYRLADLDLSMN-QISGP----IPDILGKMLVLSTLNLDSNLLSGK----IPSTLLSNTGMGILNLSRNALGGN--- 287 (364)
Q Consensus 220 l~~l~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~--- 287 (364)
+.+-+.|++|++++| .+... +.+.+..-+.|+.|+|++|.+... +...+..-+.|++|+|+.|.|++.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344567778888774 66432 345556667788888888888643 233444557888888888888754
Q ss_pred -cCccccCCCCCCEEEccCC---cCCC----CcchhcccCCCCCeEEccCCcC
Q 017912 288 -IPDVFGSKSYFMALDLSYN---NLKG----PIPGSLSSSAYIGHLDLSHNHL 332 (364)
Q Consensus 288 -~~~~l~~~~~L~~L~l~~n---~l~~----~~~~~l~~l~~L~~L~l~~N~l 332 (364)
+-+.+...+.|++|+|++| .+.. .+...+...++|+.|+++.|.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3345566677899999865 3332 2455667778899999887754
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.53 E-value=9.6e-05 Score=56.95 Aligned_cols=54 Identities=26% Similarity=0.349 Sum_probs=26.3
Q ss_pred EEEcccCCCc-cccCccccCCCCCCEEEccCCcCCCCcchhcccCCCCCeEEccCCc
Q 017912 276 ILNLSRNALG-GNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNH 331 (364)
Q Consensus 276 ~L~l~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~ 331 (364)
.++.++++++ ..+|..+ .+++++|+|++|+|+...+..|..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555555554 2333222 1345566666666654333444455555555444443
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.10 E-value=0.00039 Score=57.36 Aligned_cols=90 Identities=11% Similarity=0.118 Sum_probs=68.8
Q ss_pred chhhhCCCCCCEEEccCC-cCCcc----cchhhhCCCCCCEEEcccCCCcccc----CccccCCCCCCEEEccCCcCCCC
Q 017912 241 PDILGKMLVLSTLNLDSN-LLSGK----IPSTLLSNTGMGILNLSRNALGGNI----PDVFGSKSYFMALDLSYNNLKGP 311 (364)
Q Consensus 241 ~~~l~~l~~L~~L~l~~n-~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~l~~n~l~~~ 311 (364)
...+..-+.|++|+++++ .+... +...+..-+.|+.|+|++|++.+.. ...+...+.|++|+|++|.|.+.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 344456688999999986 77632 3455666789999999999998643 33455678999999999999863
Q ss_pred ----cchhcccCCCCCeEEccCC
Q 017912 312 ----IPGSLSSSAYIGHLDLSHN 330 (364)
Q Consensus 312 ----~~~~l~~l~~L~~L~l~~N 330 (364)
+...+...+.|+.|++++|
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCC
Confidence 4456667788999999975
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.80 E-value=0.0031 Score=48.33 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=46.0
Q ss_pred CEEEccCCcCC-cccchhhhCCCCCCEEEcccCCCccccCccccCCCCCCEEEccCCcCCC
Q 017912 251 STLNLDSNLLS-GKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKG 310 (364)
Q Consensus 251 ~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 310 (364)
..++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|.+.-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 36788888886 35564433 579999999999997777788889999999999998864
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=49.27 E-value=25 Score=24.77 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=17.7
Q ss_pred ccccCCCCCCEEecCCCCCCcccCccccCCCCCCCEEEcc
Q 017912 97 PAICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLV 136 (364)
Q Consensus 97 ~~~~~l~~L~~L~l~~~~~l~~~~p~~l~~l~~L~~L~l~ 136 (364)
..|..|..|+.+.+. ..++..-...|.++.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP--~~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQ--PNIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEEC--TTSSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcC--CchheEcHHHHhccCCccEEEEc
Confidence 345555555555554 23332223344445555554444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=34.27 E-value=53 Score=23.02 Aligned_cols=12 Identities=8% Similarity=0.252 Sum_probs=4.6
Q ss_pred cCCCCCCCEEEc
Q 017912 124 ITSIASLRVLDL 135 (364)
Q Consensus 124 l~~l~~L~~L~l 135 (364)
|.++.+|+.+.+
T Consensus 16 F~~c~~L~~i~i 27 (100)
T 2lz0_A 16 FAGNTVIREITV 27 (100)
T ss_dssp TTTCTTCCCEEE
T ss_pred hcCCCCCcEEEc
Confidence 333333333333
Done!