BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017913
(364 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SMR2|TBCC_ARATH Tubulin-folding cofactor C OS=Arabidopsis thaliana GN=POR PE=1 SV=1
Length = 345
Score = 352 bits (903), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 195/331 (58%), Positives = 242/331 (73%), Gaps = 27/331 (8%)
Query: 38 DETLQKKHQSMIHRLAVRHQTR----LETRKPDSPDSSSTSAFLSRFNDFKNSITTQI-- 91
D LQKKH M+ RL+ RHQ R ++ S STS+FL++F+D K SI ++I
Sbjct: 14 DPALQKKHHDMLERLSARHQARKSDSPDSSSSSSSTLESTSSFLAKFSDSKRSIESRIAE 73
Query: 92 --------ESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTL 143
+S+ S L +IS +I +LEKL+AENSY LPSYE+R+SLK +SDL+Q+LD L
Sbjct: 74 SRLASSSTDSSKLKSDLAEISVAIDNLEKLLAENSYFLPSYEVRSSLKIVSDLKQSLDIL 133
Query: 144 TAHIVPKKKFSFKNK-----PVKKETHIINQDTECNTVSLPELKKTSLPVRDSPGFRDKQ 198
+ +VPKKKFSFK+K P K I D V P+L +PVRDSPG R+K
Sbjct: 134 SGELVPKKKFSFKSKSTTKKPESKLPEIQKPDV----VLPPKL----VPVRDSPGLRNKH 185
Query: 199 SQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVE 258
+ LVK+F+GS IGEFTLS LDSC+VKL G+VNALF+++LK C VY GPV+GSILI++VE
Sbjct: 186 GETLVKSFEGSSIGEFTLSDLDSCQVKLTGTVNALFLHRLKKCSVYTGPVIGSILIDDVE 245
Query: 259 NCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNE 318
+C+LVL SHQIRIH A++SDFYLR RSRPIIEDSN VRFAPYCL YKGI+ DL+ AGL E
Sbjct: 246 DCVLVLASHQIRIHCARKSDFYLRVRSRPIIEDSNGVRFAPYCLDYKGIDEDLKTAGLEE 305
Query: 319 ETGNWTNVDDFKWLRAVQSPNWSVLPEEERI 349
ET NW NVDDF+WLRAVQSPNWS+LPEEER+
Sbjct: 306 ETNNWANVDDFRWLRAVQSPNWSLLPEEERV 336
>sp|Q3SZE9|TBCC_BOVIN Tubulin-specific chaperone C OS=Bos taurus GN=TBCC PE=2 SV=1
Length = 345
Score = 168 bits (426), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 105/342 (30%), Positives = 175/342 (51%), Gaps = 17/342 (4%)
Query: 17 ISLQSLMSNMEGEETPHRQIPDETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAF 76
+S +L + G + +P E LQK+ H + + R + R+ + + F
Sbjct: 6 LSAAALANGDLGSQRERTLVP-ERLQKRE----HERQLEVERRKQKRQDQEVEEEKSDFF 60
Query: 77 LSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDL 136
+ F ++++ +ES L + ++ + L+KL+ ++ L +Y++R + + ++ L
Sbjct: 61 AAAFARERSAVEELLESGESVERLEEAAARLQGLQKLINDSVLFLAAYDLRQAQEVLARL 120
Query: 137 RQNLDTLTAHIVPKKKFSFKNKPVKKETHIINQDTECNTVSLPELKKTSLPVR------D 190
+ L + PKK+F+FK + KK+ Q E TS P D
Sbjct: 121 QAALAKRRQELQPKKRFAFKTR--KKDAASATQVASAPDAPAAEGSLTSPPPLKEEGDFD 178
Query: 191 SP---GFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGP 247
S GF + QSQVL K + + L+ L +C +KL G+ N L + + + C + GP
Sbjct: 179 SSWICGFSNLQSQVLEKRAEELHQQDVLLTQLRNCTIKLYGNPNTLRLTKAQGCTLLCGP 238
Query: 248 VMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGI 307
V S+ +E+ +C+L + Q+R+H K + +L+ SR I+ED ++FAPY Y GI
Sbjct: 239 VSTSVFLEDCSDCVLAVACQQLRVHTTKDTRIFLQVTSRAIMEDCTGIQFAPYTWSYPGI 298
Query: 308 EADLEVAGLNEETGNWTNVDDFKWL-RAVQSPNWSVLPEEER 348
+ D E +GL++ NW +VDDF WL R V SPNW+VLPEEER
Sbjct: 299 DKDFEGSGLDKNKNNWNDVDDFNWLARDVASPNWNVLPEEER 340
>sp|Q8VCN9|TBCC_MOUSE Tubulin-specific chaperone C OS=Mus musculus GN=Tbcc PE=2 SV=1
Length = 341
Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 136/256 (53%), Gaps = 9/256 (3%)
Query: 100 LTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKKFSFKNKP 159
L + ++ + L KL+ ++ L +Y++R ++ L+ L + PKK+F+FK +
Sbjct: 83 LEEAANRLQGLRKLLNDSVLFLAAYDLRQGQAALAQLQAVLTERRQELQPKKRFAFKAR- 141
Query: 160 VKKETHIINQDTECNTVSLPELKKTSLPVRDSPG------FRDKQSQVLVKNFKGSEIGE 213
KK+ Q S + +PG F + +SQ L K + +
Sbjct: 142 -KKDAAGTAQVDAAPVTSAAPSPPVTKEEEGAPGASWACGFSNLESQDLEKRAEELHQRD 200
Query: 214 FTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHF 273
LS L +C VKL G+ N L + + + CKV GPV S+ +E+ +C+L + Q+R+H
Sbjct: 201 VLLSDLTNCTVKLCGNPNTLRLAKARGCKVLCGPVTTSVFLEDCRDCVLAVACQQLRVHT 260
Query: 274 AKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL- 332
K + +L+ SR I+ED + ++FAPY Y GI+ D + +GL+ NW VDDF WL
Sbjct: 261 TKDTRVFLQVTSRAIVEDCSGIQFAPYTWSYPGIDKDFQDSGLDRSKNNWDQVDDFNWLA 320
Query: 333 RAVQSPNWSVLPEEER 348
R V SPNWS+LPEEER
Sbjct: 321 RNVASPNWSILPEEER 336
>sp|Q15814|TBCC_HUMAN Tubulin-specific chaperone C OS=Homo sapiens GN=TBCC PE=1 SV=2
Length = 346
Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 170/328 (51%), Gaps = 31/328 (9%)
Query: 39 ETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLSRFNDFKNSITTQIESAADPS 98
E LQ++ Q +L V + R + R+ + ++ F++ F + ++ +E A
Sbjct: 27 ERLQRREQE--RQLEV--ERRKQKRQNQEVEKENSHFFVATFVRERAAVEELLERAESVE 82
Query: 99 CLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKKFSFKNK 158
L + +S + L+KL+ ++ + L +Y++R + ++ L+ L + PKK+F+FK +
Sbjct: 83 RLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKRFAFKTR 142
Query: 159 PVKKETHIINQDTECNTV--SLPELKKTSLPVRDSP---------------GFRDKQSQV 201
+D +T + P + ++DSP GF + +SQV
Sbjct: 143 ---------GKDAASSTKVDAAPGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQV 193
Query: 202 LVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCL 261
L K + L+ L +C V+L G+ N L + + +CK+ GPV S+ +E+ +C+
Sbjct: 194 LEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCV 253
Query: 262 LVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETG 321
L + Q+RIH K + +L+ SR I+ED + ++FAPY Y I+ D E +GL+
Sbjct: 254 LAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGLDRSKN 313
Query: 322 NWTNVDDFKWL-RAVQSPNWSVLPEEER 348
NW +VDDF WL R + SPNWS+LPEEER
Sbjct: 314 NWNDVDDFNWLARDMASPNWSILPEEER 341
>sp|Q5R5J7|TBCC_PONAB Tubulin-specific chaperone C OS=Pongo abelii GN=TBCC PE=2 SV=1
Length = 346
Score = 155 bits (391), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 167/327 (51%), Gaps = 29/327 (8%)
Query: 39 ETLQKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLSRFNDFKNSITTQIESAADPS 98
E LQ++ Q +L V + R + R+ + ++ F + F + ++ +E A
Sbjct: 27 ERLQRREQE--RQLEV--ERRKQKRQNQEVEKENSHFFAATFARERAAVEELLERAESVE 82
Query: 99 CLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKKFSFKNK 158
L + +S + L+KL+ ++ + L +Y++R + ++ L+ L + PKK+F+FK +
Sbjct: 83 RLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRELQPKKRFAFKTR 142
Query: 159 PVKKETHIINQDTECNTV-SLPELKKTSLPVRDSP---------------GFRDKQSQVL 202
+ C V + P + ++DSP GF + +SQVL
Sbjct: 143 GKDAAS--------CTKVDAAPGIPPAVESIQDSPLPKKAEGDLGSSWLCGFSNLESQVL 194
Query: 203 VKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLL 262
K + L+ L +C V+L G+ N L + + +CK+ GPV S+ +E+ +C+L
Sbjct: 195 EKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVL 254
Query: 263 VLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGN 322
+ Q+RIH K + +L+ SR I+ED + ++FAPY Y I+ D E +GL+ N
Sbjct: 255 AVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGLDRSKNN 314
Query: 323 WTNVDDFKWL-RAVQSPNWSVLPEEER 348
W +VDDF WL R + SPNW +LPEEER
Sbjct: 315 WNDVDDFNWLARDMASPNWCILPEEER 341
>sp|Q54PY1|TBCC_DICDI Tubulin-specific chaperone C OS=Dictyostelium discoideum GN=tbcc
PE=3 SV=1
Length = 420
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 75/154 (48%), Gaps = 28/154 (18%)
Query: 216 LSGLDSCEVKL-VGSVNALFINQLKNCKVYVG-PVMGSILIEEVENCLLVLVSHQIRIHF 273
+S L C V L + + AL IN L NCK+ P+ GSI I+ N + LVS QIRIH+
Sbjct: 267 ISDLTDCTVILDMKVLTALKINNLVNCKIRANSPIDGSIFIDNCINSIFSLVSRQIRIHY 326
Query: 274 AKRSDFYLRARSRPIIEDSNEVRFAPYCL------------------------KYKGIEA 309
F + +S PIIE S +++F+ Y ++K
Sbjct: 327 CTDCQFNIFVKSNPIIEGSKQIKFSSYLQNLKQQQQQQQQQEQEKVLSSFDNKRFKEYSF 386
Query: 310 DLEVAGLNEETGNWTNVDDFKWLRAVQSPNWSVL 343
DLE + ++ W V+DF W++ QSPNWS++
Sbjct: 387 DLESNNI--DSDKWKLVNDFDWIQQKQSPNWSLV 418
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 55 RHQTRLETR------KPDSPDSSSTSAFLSRFNDFKNSITTQIESAADPS---------- 98
R Q++LE R + D S+ S L N+ + I ++ ++ +
Sbjct: 33 RLQSKLEKREISNKEQIDQSSSNIASETLLLINNLSDDIENRLNEISNNTNENKAEDLKE 92
Query: 99 CLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKKFSF 155
+ S+S++ + +S+ L SY++++ L+ I +LR+ +D +PK+K S
Sbjct: 93 SYNQMEESLSEINSITTMSSHILTSYDVKSILENIDNLRKQIDKSKEKYMPKQKLSL 149
>sp|Q8AVX5|XRP2_XENLA Protein XRP2 OS=Xenopus laevis GN=rp2 PE=2 SV=3
Length = 353
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 2/137 (1%)
Query: 213 EFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIH 272
+F + ++C + + + I+ NC++++GPV GS+ + ++C V+ Q R
Sbjct: 64 QFVIQECENCNIYIFDHSATITIDDCTNCRIFLGPVKGSVFFRDCKDCKCVVACQQFRTR 123
Query: 273 FAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL 332
+R D +L ++PIIE S ++F + Y + + AGL+ W+N+ DF +
Sbjct: 124 DCRRMDVFLCCSTQPIIESSTSMKFGCFQYYYPELALQFKEAGLSILNNTWSNIHDFTPV 183
Query: 333 RAVQSPNWSVLPEEERI 349
NWS+LP + I
Sbjct: 184 AG--ETNWSLLPPDAVI 198
>sp|O75695|XRP2_HUMAN Protein XRP2 OS=Homo sapiens GN=RP2 PE=1 SV=4
Length = 350
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 213 EFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIH 272
+F + ++C + + + I+ NC +++GPV GS+ +C L Q R+
Sbjct: 61 QFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVR 120
Query: 273 FAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL 332
++ + +L ++PIIE S+ ++F + Y + + AGL+ W+N+ DF +
Sbjct: 121 DCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPV 180
Query: 333 RAVQSPNWSVLPEE 346
NWS+LPE+
Sbjct: 181 SG--ELNWSLLPED 192
>sp|Q9EPK2|XRP2_MOUSE Protein XRP2 OS=Mus musculus GN=Rp2 PE=1 SV=3
Length = 347
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 213 EFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIH 272
+F + ++C + + + I+ NC +++GPV GS+ +C L Q R+
Sbjct: 58 QFVIQDCENCNIYIFDHSATITIDDCTNCVIFLGPVKGSVFFRNCRDCKCTLACQQFRVR 117
Query: 273 FAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL 332
++ + +L ++PIIE S ++F + Y + A + AGL+ W++V DF +
Sbjct: 118 DCRKLEVFLCCATQPIIESSTNIKFGCFQWYYPELAAQFKDAGLSIFNNIWSHVHDFTPV 177
Query: 333 RAVQSPNWSVLPE 345
NWS+LPE
Sbjct: 178 SG--ELNWSLLPE 188
>sp|Q5ZHN4|XRP2_CHICK Protein XRP2 OS=Gallus gallus GN=RP2 PE=2 SV=3
Length = 357
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 213 EFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIH 272
+F + ++C + + + I+ NC++++GP+ GS+ ++C ++ Q R
Sbjct: 68 QFVIQDCENCSIYIFDHSATVTIDDCVNCQIFLGPIKGSVFFRNCKDCKCIVACQQFRTR 127
Query: 273 FAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL 332
+R + +L ++PIIE S ++F + Y + + AGL+ W+N+ DF +
Sbjct: 128 DCRRLEVFLCCATQPIIESSTGMKFGCFQYYYPELALQFKDAGLSIFNNTWSNIHDFTPV 187
Query: 333 RAVQSPNWSVLPE 345
NW +LPE
Sbjct: 188 SG--ENNWGLLPE 198
>sp|Q9P3T8|TBCC_SCHPO Tubulin-specific chaperone C OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cin2 PE=3 SV=1
Length = 259
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 124/294 (42%), Gaps = 60/294 (20%)
Query: 76 FLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISD 135
FL++ +K++ + Q + + L + S + ++ + + E + Y+ R ++ + D
Sbjct: 12 FLTKL--YKSTPSEQTSRSEKETWLEEKSKYLGEMTRELNEVQDQIAPYDRRVCMEQLVD 69
Query: 136 LRQNLDTLTAHIVPKKKFSFK--------NKPVKKETHIINQDT-----ECNTVSLPELK 182
L + L + I+P++ F F+ KPVK T +N + E +T+ L LK
Sbjct: 70 LTRRLQQIRHDILPRQPFRFQRALHVKSSQKPVKNIT--VNAEAPEVYFENDTLYLANLK 127
Query: 183 KTSLPVRDSPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCK 242
++ P +K +V K+ + I + +C SVN ++ C
Sbjct: 128 NQNIGDNVIPYPNNKAVKVSAKSLRSCNIS------ISNC-----SSVN---LHNATKCN 173
Query: 243 VYVGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCL 302
+ GSI + ++ + + + HQ R+H + +LR ++ P+IE+S E+ F+
Sbjct: 174 FTFPTIQGSIHLSDINDSTICVSCHQFRLHHSTNLRVHLRCKTSPVIEESKEISFS---- 229
Query: 303 KYKGIEADLEVAGLNEETGNWTNVDDFKWLRAVQSPNWSVLPEEERIGTVDLVD 356
YK L DF W R+ SP++ + T DL D
Sbjct: 230 -YKDEHPIL----------------DFTWARSDPSPHFRI--------TSDLFD 258
>sp|Q640P7|TBCC1_MOUSE TBCC domain-containing protein 1 OS=Mus musculus GN=Tbccd1 PE=1
SV=1
Length = 552
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 224 VKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRA 283
+ L+ + ++ I + +N +GPV ++ + + EN ++ V H++ I F++
Sbjct: 342 IYLLSPLRSMTIEKCRNSTFVLGPVETTLHLHDCENLKVIAVCHRLSISSTTSCTFHIMT 401
Query: 284 RSRPIIEDSNE-VRFAPYCLKYKGIEADLEVAGLNEETGNWTN 325
SRP+I N+ V FAP+ Y +E + GL W N
Sbjct: 402 PSRPLILSGNQTVTFAPFHTHYPMLEDHMARTGLATVPNYWDN 444
>sp|Q08AV6|TBCC1_XENLA TBCC domain-containing protein 1 OS=Xenopus laevis GN=tbccd1 PE=2
SV=1
Length = 547
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 81/190 (42%), Gaps = 15/190 (7%)
Query: 173 CNTVSLPELKKTSLPVRDSPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNA 232
CNT +P + + + S K S+ LV + C + L+ + +
Sbjct: 298 CNTYKVPHTHRMVVMSQISKQTLAKSSKTLVD-------ARVKIHRCSDCYIYLLSPLRS 350
Query: 233 LFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDS 292
+ + + +NC + +GPV + I+ N ++ V ++ + F++ +RP+
Sbjct: 351 VTVEKCQNCTIILGPVQTVLHIQMCYNVKIIAVCQRLSLLSTTNCTFHILTPTRPLFYCG 410
Query: 293 NE-VRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWLRAVQSPN---WSVLPEEER 348
N+ AP+ ++Y +E + GL +W D +L + +S N W ++P E+
Sbjct: 411 NQGAVLAPFHIRYSMLEDHMAQTGLATVPNSW----DRPFLFSTESNNSNIWRLMPPEDF 466
Query: 349 IGTVDLVDLE 358
V ++E
Sbjct: 467 FTFVVPFEME 476
>sp|A1L0Z4|TBCC1_XENTR TBCC domain-containing protein 1 OS=Xenopus tropicalis GN=tbccd1
PE=2 SV=1
Length = 547
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 79/190 (41%), Gaps = 15/190 (7%)
Query: 173 CNTVSLPELKKTSLPVRDSPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNA 232
CNT +P + + + S K S+ LV + C + L+ + +
Sbjct: 298 CNTYKVPHTHRMVVMSQISKQTLAKSSKTLVD-------ARVKIHRCSDCYIYLLSPLRS 350
Query: 233 LFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDS 292
+ + + +NC + +GPV + I+ N ++ V ++ + F++ +RP+
Sbjct: 351 VTVEKCQNCTIVLGPVQTVLHIQMCYNVKIIAVCQRLSLLSTTNCTFHVLTPTRPLFYCG 410
Query: 293 NE-VRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWLRAVQSPN---WSVLPEEER 348
N+ V AP+ + Y +E + GL +W D + + +S N W +L EE
Sbjct: 411 NQGVVLAPFHISYSMLEDHMAHTGLATVPNSW----DRPFFFSTESSNSHIWRLLLPEEF 466
Query: 349 IGTVDLVDLE 358
V ++E
Sbjct: 467 FTFVVPFEME 476
>sp|A4IF93|TBCC1_BOVIN TBCC domain-containing protein 1 OS=Bos taurus GN=TBCCD1 PE=2 SV=1
Length = 557
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 224 VKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRA 283
+ L+ + ++ I + +N +GPV ++ + +N ++ V H++ I F++
Sbjct: 342 IYLLSPLRSVTIEKCRNSTFVLGPVQTALHLHSCDNVKVIAVCHRLSISSTTGCIFHILT 401
Query: 284 RSRPIIEDSNE-VRFAPYCLKYKGIEADLEVAGLNEETGNWTN 325
+RP+I N+ V FAP+ Y +E + GL W N
Sbjct: 402 PTRPLILSGNQRVTFAPFHTHYPMLEDHMARTGLATVPNYWDN 444
>sp|Q5FVR8|TBCC1_RAT TBCC domain-containing protein 1 OS=Rattus norvegicus GN=Tbccd1
PE=2 SV=1
Length = 569
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 224 VKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRA 283
+ L+ + ++ I + +N +GPV ++ + EN ++ V H++ + F++
Sbjct: 342 IYLLSPLRSMTIEKCRNSTFVLGPVETALHLHGCENLKVIAVCHRLSVSSTIGCTFHIMT 401
Query: 284 RSRPIIEDSNE-VRFAPYCLKYKGIEADLEVAGLNEETGNW 323
SRP+I N+ V FAP+ Y +E + GL W
Sbjct: 402 PSRPLILSGNQTVTFAPFHTHYPMLEDHMARTGLATVPNYW 442
>sp|Q9NVR7|TBCC1_HUMAN TBCC domain-containing protein 1 OS=Homo sapiens GN=TBCCD1 PE=2
SV=1
Length = 557
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 224 VKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRA 283
+ L+ + ++ I + +N +GPV ++ + +N ++ V H++ I F++
Sbjct: 342 IYLLSPLRSVTIEKCRNSIFVLGPVGTTLHLHSCDNVKVIAVCHRLSISSTTGCIFHVLT 401
Query: 284 RSRPIIEDSNE-VRFAPYCLKYKGIEADLEVAGLNEETGNWTN 325
+RP+I N+ V FAP+ Y +E + GL W N
Sbjct: 402 PTRPLILSGNQTVTFAPFHTHYPMLEDHMARTGLATVPNYWDN 444
>sp|Q5ZKT1|TBCC1_CHICK TBCC domain-containing protein 1 OS=Gallus gallus GN=TBCCD1 PE=2
SV=1
Length = 555
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 224 VKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRA 283
+ L+ + ++ I + +N +GPV S+ + +N ++ V H + + F++
Sbjct: 340 IYLLSPLCSVTIEKCRNSTFVLGPVEASVHVHSCDNIKVITVCHCLSLSSTTGCTFHILT 399
Query: 284 RSRPIIEDSNE-VRFAPYCLKYKGIEADLEVAGLNEETGNW 323
++P+I N+ + FAP+ Y +E + GL W
Sbjct: 400 PTQPLILAGNQAISFAPFHTHYPMLEDHMAQVGLATVPNYW 440
>sp|Q5UNU4|YL685_MIMIV Uncharacterized protein L685 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L685 PE=3 SV=1
Length = 337
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 76 FLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISD 135
F++ ND K ++ + S +CL I+ SIS ++L+ EN+ L ++EI
Sbjct: 3 FMTISNDNKIVLSIPMLSTLSLNCLVKITGSISQSKQLLVENNLLLSNFEI--------- 53
Query: 136 LRQNLDTLTAHIVPK----KKFSFK 156
+ NL ++ I+ K K FS+K
Sbjct: 54 IYNNLVSIKRQIIYKDIFDKMFSYK 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,504,598
Number of Sequences: 539616
Number of extensions: 5272361
Number of successful extensions: 13520
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 13472
Number of HSP's gapped (non-prelim): 51
length of query: 364
length of database: 191,569,459
effective HSP length: 119
effective length of query: 245
effective length of database: 127,355,155
effective search space: 31202012975
effective search space used: 31202012975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)