Query 017913
Match_columns 364
No_of_seqs 233 out of 409
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2512 Beta-tubulin folding c 100.0 6.3E-57 1.4E-61 430.5 11.5 318 26-349 1-336 (337)
2 PF07986 TBCC: Tubulin binding 100.0 5.8E-40 1.3E-44 279.3 11.9 119 211-329 1-120 (120)
3 KOG4416 Uncharacterized conser 99.7 9.9E-17 2.2E-21 160.7 9.1 137 190-326 313-450 (605)
4 KOG2512 Beta-tubulin folding c 99.0 3.7E-12 8E-17 123.2 -6.9 113 213-328 61-176 (337)
5 PF07986 TBCC: Tubulin binding 98.5 7.5E-07 1.6E-11 75.8 9.2 94 192-290 4-98 (120)
6 smart00673 CARP Domain in CAPs 98.3 1.3E-06 2.9E-11 59.4 4.8 38 219-256 1-38 (38)
7 PF08603 CAP_C: Adenylate cycl 97.9 3.3E-05 7.2E-10 69.2 6.7 108 190-298 11-124 (159)
8 smart00673 CARP Domain in CAPs 97.1 0.00052 1.1E-08 46.5 3.2 35 257-291 1-38 (38)
9 KOG2675 Adenylate cyclase-asso 97.0 0.0025 5.3E-08 64.8 7.9 88 211-298 353-445 (480)
10 PF08603 CAP_C: Adenylate cycl 95.8 0.052 1.1E-06 48.8 8.6 70 228-298 30-103 (159)
11 KOG4416 Uncharacterized conser 94.8 0.071 1.5E-06 55.1 6.7 51 257-307 454-504 (605)
12 KOG2675 Adenylate cyclase-asso 85.5 4.1 8.9E-05 42.1 8.6 81 218-298 341-424 (480)
13 PF05008 V-SNARE: Vesicle tran 62.3 69 0.0015 24.5 8.7 64 80-147 1-77 (79)
14 PHA03161 hypothetical protein; 52.3 58 0.0012 29.1 6.8 73 70-147 30-105 (150)
15 PF14712 Snapin_Pallidin: Snap 51.2 1.2E+02 0.0026 23.9 8.7 72 73-146 5-79 (92)
16 PF10168 Nup88: Nuclear pore c 50.7 1.4E+02 0.0031 33.2 11.0 46 101-146 610-661 (717)
17 KOG4460 Nuclear pore complex, 47.2 1.2E+02 0.0027 32.6 9.3 28 116-143 701-728 (741)
18 PF04048 Sec8_exocyst: Sec8 ex 46.1 96 0.0021 27.0 7.3 18 100-117 81-98 (142)
19 PF10146 zf-C4H2: Zinc finger- 45.8 1E+02 0.0022 29.4 7.9 73 72-146 29-103 (230)
20 PF08919 F_actin_bind: F-actin 45.3 33 0.00071 29.1 4.0 26 132-157 40-66 (110)
21 PF05149 Flagellar_rod: Parafl 45.3 2.4E+02 0.0051 28.0 10.5 83 43-140 81-163 (289)
22 PF00669 Flagellin_N: Bacteria 44.7 1.9E+02 0.0041 24.3 11.2 88 70-157 39-136 (139)
23 KOG4807 F-actin binding protei 44.6 1.7E+02 0.0036 30.4 9.5 26 39-64 344-369 (593)
24 COG1579 Zn-ribbon protein, pos 42.1 2.6E+02 0.0057 26.9 10.1 96 43-146 34-132 (239)
25 KOG0994 Extracellular matrix g 40.7 2.5E+02 0.0053 33.2 10.8 99 46-147 1170-1290(1758)
26 KOG3809 Microtubule-binding pr 38.7 2.6E+02 0.0056 29.4 9.9 78 70-147 467-562 (583)
27 PLN02939 transferase, transfer 38.3 1.6E+02 0.0034 34.0 9.0 92 43-146 303-398 (977)
28 PF11348 DUF3150: Protein of u 36.2 1.1E+02 0.0023 29.6 6.6 83 75-159 49-146 (257)
29 PRK13182 racA polar chromosome 36.2 1E+02 0.0022 28.1 6.1 49 99-147 93-141 (175)
30 PF10168 Nup88: Nuclear pore c 35.0 3E+02 0.0065 30.7 10.5 68 78-147 635-708 (717)
31 PF05531 NPV_P10: Nucleopolyhe 34.8 1.9E+02 0.0042 22.9 6.6 50 99-148 12-66 (75)
32 PF14362 DUF4407: Domain of un 34.6 4E+02 0.0087 25.7 10.4 35 79-115 132-166 (301)
33 PF05852 DUF848: Gammaherpesvi 33.5 1.5E+02 0.0032 26.5 6.4 73 70-147 30-105 (146)
34 PF03978 Borrelia_REV: Borreli 33.2 2.6E+02 0.0056 25.2 7.8 42 79-120 22-69 (160)
35 PF07889 DUF1664: Protein of u 32.9 2.4E+02 0.0053 24.4 7.5 70 73-144 52-123 (126)
36 PRK12718 flgL flagellar hook-a 30.6 4E+02 0.0086 28.5 10.2 83 76-160 58-141 (510)
37 KOG2417 Predicted G-protein co 29.2 94 0.002 31.8 4.9 34 99-134 250-283 (462)
38 PF10498 IFT57: Intra-flagella 28.8 3.9E+02 0.0085 27.1 9.5 17 41-57 246-262 (359)
39 COG3416 Uncharacterized protei 27.6 2.5E+02 0.0054 26.7 7.1 28 126-153 57-84 (233)
40 PF10393 Matrilin_ccoil: Trime 26.3 2.2E+02 0.0047 20.5 5.1 32 78-114 15-46 (47)
41 PF06705 SF-assemblin: SF-asse 25.9 5.6E+02 0.012 24.1 9.9 73 73-145 61-142 (247)
42 smart00808 FABD F-actin bindin 25.8 1.3E+02 0.0029 26.1 4.7 40 105-144 55-95 (126)
43 PF00804 Syntaxin: Syntaxin; 25.3 3.2E+02 0.007 21.1 9.0 17 76-92 1-17 (103)
44 COG3883 Uncharacterized protei 24.7 3.2E+02 0.0069 26.8 7.5 66 73-145 36-101 (265)
45 PRK10807 paraquat-inducible pr 24.5 3.4E+02 0.0073 29.2 8.5 99 41-144 418-517 (547)
46 PRK08870 flgL flagellar hook-a 24.3 7.5E+02 0.016 25.0 12.5 84 78-161 50-142 (404)
47 PF08317 Spc7: Spc7 kinetochor 23.7 3.3E+02 0.0072 26.9 7.8 40 99-139 252-291 (325)
48 PF08649 DASH_Dad1: DASH compl 23.5 1.9E+02 0.0042 21.7 4.6 35 79-118 2-36 (58)
49 PF10504 DUF2452: Protein of u 23.4 2.8E+02 0.006 25.1 6.4 60 96-159 28-92 (159)
50 PRK10884 SH3 domain-containing 23.0 3.7E+02 0.008 25.1 7.5 53 78-144 114-166 (206)
51 PF07851 TMPIT: TMPIT-like pro 22.8 5.6E+02 0.012 25.9 9.1 64 78-147 21-84 (330)
52 COG0216 PrfA Protein chain rel 22.5 8.4E+02 0.018 24.9 10.5 73 74-153 32-109 (363)
53 PRK00965 tetrahydromethanopter 21.4 1.1E+02 0.0023 25.4 3.1 39 121-159 28-68 (96)
54 cd01751 PLAT_LH2 PLAT/ LH2 dom 21.4 1.8E+02 0.0039 25.5 4.7 37 227-267 82-119 (137)
55 PF07361 Cytochrom_B562: Cytoc 21.3 2.4E+02 0.0052 23.3 5.3 49 99-147 22-76 (103)
56 PF03962 Mnd1: Mnd1 family; I 20.9 6.5E+02 0.014 23.0 9.0 49 99-147 77-126 (188)
57 PF15397 DUF4618: Domain of un 20.9 5.4E+02 0.012 25.1 8.3 54 47-115 52-105 (258)
58 PF01923 Cob_adeno_trans: Coba 20.8 1.1E+02 0.0023 27.3 3.3 57 99-158 54-110 (163)
59 PF05440 MtrB: Tetrahydrometha 20.2 1.1E+02 0.0024 25.4 3.0 37 123-159 29-67 (97)
60 PF14282 FlxA: FlxA-like prote 20.1 3.3E+02 0.0071 22.5 5.9 20 99-118 20-39 (106)
61 PRK11546 zraP zinc resistance 20.1 5.8E+02 0.013 22.6 7.7 34 81-114 71-105 (143)
No 1
>KOG2512 consensus Beta-tubulin folding cofactor C [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-57 Score=430.51 Aligned_cols=318 Identities=32% Similarity=0.484 Sum_probs=266.5
Q ss_pred ccCCCCCCCCCCchhhhhhhhhHHHHHHHHHHHHhhhc-CCC----CCCCCchHHHHHHHHHHHHHHHHHHhhcCChh-h
Q 017913 26 MEGEETPHRQIPDETLQKKHQSMIHRLAVRHQTRLETR-KPD----SPDSSSTSAFLSRFNDFKNSITTQIESAADPS-C 99 (364)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~erl~~R~~~r~~~~-~~~----~~~~e~~~~F~~~F~~~~~~ie~~L~~~~~~~-~ 99 (364)
|+|+.... ..++++.++|. |+|||.+|+++|++++ .++ +...|.+++|..+|..+..+||++|+...--. .
T Consensus 1 Me~~~~~~-r~~d~e~r~~~--~~erl~kr~~drr~~v~~~~~~~s~~k~Es~~~f~~tf~~~t~~ie~~l~~~~~l~~~ 77 (337)
T KOG2512|consen 1 MECSFSKR-RTGDKESRKKN--ELERLKKRSWDRREKVDPKDRSNSTLKKESVDRFPATFAGSTADIEERLNENEYLERF 77 (337)
T ss_pred Cccchhhh-hccChhhhhhh--hhcccchhhhhhhhcCChhhhhhhhhhhhhhhhhhHhHhccchhHHHHHHHHHHHHHH
Confidence 45666555 67787777766 9999999999999999 333 33389999999999999999999998542212 6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCceeccCCCCccc-cc------ccCCcc
Q 017913 100 LTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKKFSFKNKPVKKET-HI------INQDTE 172 (364)
Q Consensus 100 l~~i~~~i~~L~k~l~das~~Lp~YD~r~~~~~L~~L~~~l~~~r~~l~PKkKF~Fk~k~~~~~~-~~------~~~~~~ 172 (364)
+++++..|++|++.+++..+|||+|+.|.|++.+..|+.++++.|..++|||+|.|+.+.+-.++ ++ .+....
T Consensus 78 l~e~tv~Iddl~~~l~~~~~fl~sy~vR~c~~~l~~Lt~~l~~~R~dl~pkk~F~f~~t~~~vkSStki~fa~~~Pe~k~ 157 (337)
T KOG2512|consen 78 LEEATVTIDDLTRCLIELGPFLGSYFVRSCQNCLCTLTCQLDRTRHDLLPKKKFLFCATGPIVKSSTKIKFAPYYPELKD 157 (337)
T ss_pred HHHhHhHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhcccccceeeeccCCcccccccccccccCCCcchh
Confidence 89999999999999999999999999999999999999999999999999999999975542121 11 011000
Q ss_pred --ccCCCCcccccCCCCCCCCCceecccCcEEEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccc
Q 017913 173 --CNTVSLPELKKTSLPVRDSPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMG 250 (364)
Q Consensus 173 --~~~~~~~~~~~~~~~~~~~~~i~n~~~~~i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~G 250 (364)
..+..+........-..+.++.+|..+.+++ ...+.+.+++++.|.+|.|.|.|+++++++++.++|.+++||+.|
T Consensus 158 ~~~dapl~~f~ndl~pv~~~~~~~~n~e~~vl~--~p~~~~~~~~~~~l~~c~v~l~g~~~a~~l~ratkcs~l~~p~~g 235 (337)
T KOG2512|consen 158 QIKDAPLSKFPNDLGPVSGWTPANRNPEDNVLV--VPEVTQEEVTASELSSCAVRLIGPPSAVFLHRATKCSLLCGPFAG 235 (337)
T ss_pred hhhhCCCccCCccccccccccccccCCCCceEE--cCCcccchhhHHHhhhcceeEecCCCcceeccccccccccCceee
Confidence 0000000011100012556778888888887 556678999999999999999999999999999999999999999
Q ss_pred eEEEEecCCcEEEEEeeeEEEcceeeeEEEEEccCCCeEeCCCcceeecCCCCccchHHHHHHcCCCCCCCCCCccccCC
Q 017913 251 SILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFK 330 (364)
Q Consensus 251 Sv~I~~c~nc~ivvac~QlRiH~~~~~~~yl~~~S~PIIEdC~~I~Fapy~~~Y~~le~~l~~agl~~~~n~w~~V~DF~ 330 (364)
|+||+||.+|++.+||||||+|.+++++||++|+++||||||++|.||||.+.|+.++.+|..+| +.+.|||..|+|||
T Consensus 236 si~~~d~~D~~l~~ac~qlrlh~tk~~rv~l~~~~r~iiedsk~i~Fapy~~~~p~i~~d~~~~g-~~~~nn~~~v~dFn 314 (337)
T KOG2512|consen 236 SIFISDAEDCTLEVACHQLRLHSTKEVRVYLRVTSRPIIEDSKGIDFAPYLNDYPVIDLDFNGSG-AVEVNNLIDVDDFN 314 (337)
T ss_pred eeeccchHHHHHHHHHhheeeEeeccceEEEEecccceeecccCCcchhhhhcCchhhhhccccc-hhhhcccceecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCC-CCCCCCceec--CCCccC
Q 017913 331 WLR-AVQSPNWSVL--PEEERI 349 (364)
Q Consensus 331 wlk-~~~SPNWsil--~e~er~ 349 (364)
|++ ..+||||+++ |++++.
T Consensus 315 wl~~~v~sPn~sll~~pd~~~n 336 (337)
T KOG2512|consen 315 WLSMDVPSPNWSLLGDPDEFRN 336 (337)
T ss_pred ccccccCCcchhhhcCcchhcc
Confidence 998 7899999999 877653
No 2
>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC). TBCC is a folding cofactor that participates in tubulin biogenesis along with the other tubulin folding cofactors A (TBCA), B (TBCB), E (TBCE) and D (TBCD), as well as the GTP-binding protein Arl2 [, ].; PDB: 2BX6_A 3BH7_B 3BH6_B 2YUH_A.
Probab=100.00 E-value=5.8e-40 Score=279.35 Aligned_cols=119 Identities=41% Similarity=0.822 Sum_probs=96.7
Q ss_pred ccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEeeeEEEcceeeeEEEEEccCCCeEe
Q 017913 211 IGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIE 290 (364)
Q Consensus 211 ~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac~QlRiH~~~~~~~yl~~~S~PIIE 290 (364)
|.++.|+||++|+|++.+++++++|++|++|+|++|||.|||+|++|+||+|+++|+|||+|+|+||+||++++++||||
T Consensus 1 g~~~~i~n~~~c~I~l~~~~~~v~i~~~~~c~i~~g~v~gsv~i~~c~n~~i~~~~~QlRih~~~n~~~~l~~~s~piIE 80 (120)
T PF07986_consen 1 GSDVTISNCSNCTIYLLDPLSSVHIDNCKNCTIVLGPVSGSVFIENCENCTIIVACRQLRIHNSTNCTFYLHTNSRPIIE 80 (120)
T ss_dssp T-EEEEES-BS-EEEE-S-BS-EEEES-BS-EEEEEEECCEEEEES-ECEEEEEEECEEEEES-ECEEEEEEESSEEEEE
T ss_pred CCcEEEecCcCCEEEeCCCcceEEEeCCCCCEEEEeecCceEEEecCCceEEEEEcCCeEEccccceEEEEECCCCcEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeecCCCCccchHHHHHHcCCCCCCCC-CCccccC
Q 017913 291 DSNEVRFAPYCLKYKGIEADLEVAGLNEETGN-WTNVDDF 329 (364)
Q Consensus 291 dC~~I~Fapy~~~Y~~le~~l~~agl~~~~n~-w~~V~DF 329 (364)
+|++|+||||+..|+++++||+++||+++.|+ |++|+||
T Consensus 81 ~~~~i~fapy~~~y~~l~~~l~~~~l~~~~n~~w~~v~DF 120 (120)
T PF07986_consen 81 DCTGITFAPYNTHYPNLEEHLQRAGLDPEENNLWNQVDDF 120 (120)
T ss_dssp S-ECEEEEE---B-TTCHHHHHHCT--TT----TS-EEES
T ss_pred CCCCCEEEeCcccCcCHHHHHHHcCCCchhCCccCccCCC
Confidence 99999999999999999999999999998777 9999999
No 3
>KOG4416 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=9.9e-17 Score=160.67 Aligned_cols=137 Identities=15% Similarity=0.291 Sum_probs=130.8
Q ss_pred CCCceecccCcEEEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEeeeE
Q 017913 190 DSPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQI 269 (364)
Q Consensus 190 ~~~~i~n~~~~~i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac~Ql 269 (364)
..+.+.+....+++++.+...|+++.+-||.++.|||+.++.++.+..|.+++|++|++...+++++|++.+++++|+.|
T Consensus 313 g~~~~~gV~k~Sl~k~a~~lkg~sVkv~~Cnes~iyLl~plr~~tv~~c~~s~~Vlg~agkt~~~h~c~rV~vi~~~~Ri 392 (605)
T KOG4416|consen 313 GPCNIEGVSKTSLIKQASDLKGRSVKVPNCNESVIYLLAPLRYATVFGCSDSTIVLGAAGKTTKVHHCERVHVIVAIKRI 392 (605)
T ss_pred CccccccccccccccchhhhccceeeecccchhhhhhhcCcceeeeeccCCceEEEecccceeeeccccceEEEEEeeeE
Confidence 34567788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcceeeeEEEEEccCCCeE-eCCCcceeecCCCCccchHHHHHHcCCCCCCCCCCcc
Q 017913 270 RIHFAKRSDFYLRARSRPII-EDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNV 326 (364)
Q Consensus 270 RiH~~~~~~~yl~~~S~PII-EdC~~I~Fapy~~~Y~~le~~l~~agl~~~~n~w~~V 326 (364)
-|-+|+.|.||+.|..||.| .+-..++||||+..|+-|++||...||.+..|.|+.+
T Consensus 393 ~I~~~~ecvff~~v~~Rpli~~~n~~~~faP~~t~y~~Le~hM~~~gi~~~~n~wd~p 450 (605)
T KOG4416|consen 393 CIANCRECVFFLGVNQRPLIVGDNHKLQFAPYNTFYSHLEEHMYEVGIVPTINKWDVP 450 (605)
T ss_pred EEecccceEEEeccCcceeeecCCceEEEeccccchHHHHHHHHhhceeeccccccch
Confidence 99999999999999999977 7999999999999999999999999999999999864
No 4
>KOG2512 consensus Beta-tubulin folding cofactor C [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.7e-12 Score=123.23 Aligned_cols=113 Identities=22% Similarity=0.377 Sum_probs=98.0
Q ss_pred ceEEcccCccEEEee--CccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEeeeEEEc-ceeeeEEEEEccCCCeE
Q 017913 213 EFTLSGLDSCEVKLV--GSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIH-FAKRSDFYLRARSRPII 289 (364)
Q Consensus 213 ~~~l~nl~~C~V~l~--~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac~QlRiH-~~~~~~~yl~~~S~PII 289 (364)
...|+.+.+|..+|. ..-.++.|++|++|++.+||.-||+++.+|.||+.-++|+|+|++ +|.--+.|+.+++.||+
T Consensus 61 t~~ie~~l~~~~~l~~~l~e~tv~Iddl~~~l~~~~~fl~sy~vR~c~~~l~~Lt~~l~~~R~dl~pkk~F~f~~t~~~v 140 (337)
T KOG2512|consen 61 TADIEERLNENEYLERFLEEATVTIDDLTRCLIELGPFLGSYFVRSCQNCLCTLTCQLDRTRHDLLPKKKFLFCATGPIV 140 (337)
T ss_pred chhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhcccccceeeeccCCccc
Confidence 444555556655532 355689999999999999999999999999999999999999998 99999999999999999
Q ss_pred eCCCcceeecCCCCccchHHHHHHcCCCCCCCCCCcccc
Q 017913 290 EDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDD 328 (364)
Q Consensus 290 EdC~~I~Fapy~~~Y~~le~~l~~agl~~~~n~w~~V~D 328 (364)
|.+++|.|||| ||.+.++++.+||....|..--|.+
T Consensus 141 kSStki~fa~~---~Pe~k~~~~dapl~~f~ndl~pv~~ 176 (337)
T KOG2512|consen 141 KSSTKIKFAPY---YPELKDQIKDAPLSKFPNDLGPVSG 176 (337)
T ss_pred ccccccccccC---CCcchhhhhhCCCccCCcccccccc
Confidence 99999999885 8999999999999999996555533
No 5
>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC). TBCC is a folding cofactor that participates in tubulin biogenesis along with the other tubulin folding cofactors A (TBCA), B (TBCB), E (TBCE) and D (TBCD), as well as the GTP-binding protein Arl2 [, ].; PDB: 2BX6_A 3BH7_B 3BH6_B 2YUH_A.
Probab=98.49 E-value=7.5e-07 Score=75.84 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=68.3
Q ss_pred CceecccCcEEEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEe-eeEE
Q 017913 192 PGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVS-HQIR 270 (364)
Q Consensus 192 ~~i~n~~~~~i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac-~QlR 270 (364)
+.++|.++.+|.+... -+.+.|.||++|+|++....++++|++|+||+|++ ..+.+.|++|.||.|++.+ ..-.
T Consensus 4 ~~i~n~~~c~I~l~~~---~~~v~i~~~~~c~i~~g~v~gsv~i~~c~n~~i~~--~~~QlRih~~~n~~~~l~~~s~pi 78 (120)
T PF07986_consen 4 VTISNCSNCTIYLLDP---LSSVHIDNCKNCTIVLGPVSGSVFIENCENCTIIV--ACRQLRIHNSTNCTFYLHTNSRPI 78 (120)
T ss_dssp EEEES-BS-EEEE-S----BS-EEEES-BS-EEEEEEECCEEEEES-ECEEEEE--EECEEEEES-ECEEEEEEESSEEE
T ss_pred EEEecCcCCEEEeCCC---cceEEEeCCCCCEEEEeecCceEEEecCCceEEEE--EcCCeEEccccceEEEEECCCCcE
Confidence 4688889999988432 46899999999999998788999999999999986 4588999999999999965 4778
Q ss_pred EcceeeeEEEEEccCCCeEe
Q 017913 271 IHFAKRSDFYLRARSRPIIE 290 (364)
Q Consensus 271 iH~~~~~~~yl~~~S~PIIE 290 (364)
+.+|+++.|.=+-..-|-+|
T Consensus 79 IE~~~~i~fapy~~~y~~l~ 98 (120)
T PF07986_consen 79 IEDCTGITFAPYNTHYPNLE 98 (120)
T ss_dssp EES-ECEEEEE---B-TTCH
T ss_pred EeCCCCCEEEeCcccCcCHH
Confidence 89999999998776666665
No 6
>smart00673 CARP Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product.
Probab=98.29 E-value=1.3e-06 Score=59.40 Aligned_cols=38 Identities=39% Similarity=0.805 Sum_probs=36.2
Q ss_pred cCccEEEeeCccceEEEecccCcEEEEeeccceEEEEe
Q 017913 219 LDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEE 256 (364)
Q Consensus 219 l~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~ 256 (364)
|++|+|++.|.+.+++|++|++|.|++||+.++++|.+
T Consensus 1 C~~~~i~v~g~~~~v~id~~~~~~i~l~~~~~s~~i~~ 38 (38)
T smart00673 1 CESCTIQVSGKVNTISIDKCKKCSIYLGPVSGSPEIVN 38 (38)
T ss_pred CCcEEEEEeCccCEEEEECCCCeEEEECCceeEEEEEC
Confidence 68999999999999999999999999999999999875
No 7
>PF08603 CAP_C: Adenylate cyclase associated (CAP) C terminal; InterPro: IPR013912 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the C-terminal domain of CAP proteins, which is responsible for G-actin-binding. This domain has a superhelical structure, where the superhelix turns are made of two beta-strands each []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1K4Z_B 1KQ5_A 2B0R_A 1K8F_B.
Probab=97.87 E-value=3.3e-05 Score=69.16 Aligned_cols=108 Identities=18% Similarity=0.257 Sum_probs=79.9
Q ss_pred CCCceecccCcE-EEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEE--Ee
Q 017913 190 DSPGFRDKQSQV-LVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVL--VS 266 (364)
Q Consensus 190 ~~~~i~n~~~~~-i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivv--ac 266 (364)
+.+.+.|..|.. +++...+ -...+.|.+|.||+|.+.|.+.++.|.+|++|.+++.-+-+++-|-+|.++.+-+ .|
T Consensus 11 ~kW~Ve~~~~~~~~~~~~~~-~~qsVyI~~C~n~~i~IkgKvnsItid~C~k~~vv~ds~Is~vEvinc~~~~vQv~g~v 89 (159)
T PF08603_consen 11 NKWFVENQENNKELVIEEVE-MKQSVYIYNCKNSTIQIKGKVNSITIDNCKKCSVVFDSVISSVEVINCKSVQVQVLGKV 89 (159)
T ss_dssp TEEEEECEBS-SSEEEEE---TT-EEEEEEEESEEEEEESEBSEEEEEEEEEEEEEECEBSSEEEEESEEEEEEEESS--
T ss_pred CEEEEEeccCCCCceEeccC-CCcEEEEEcccccEEEECceEEEEEEEcCCcEEEEEcCEEEEEEEEecCcEeEEEEccC
Confidence 356677777765 4443332 2468999999999999999999999999999999999988999999999999888 57
Q ss_pred eeEEEcceeeeEEEEEccC--CCeE-eCCCcceee
Q 017913 267 HQIRIHFAKRSDFYLRARS--RPII-EDSNEVRFA 298 (364)
Q Consensus 267 ~QlRiH~~~~~~~yl~~~S--~PII-EdC~~I~Fa 298 (364)
..+-+..|.++.+||.-.+ .-|+ --|+.|-+.
T Consensus 90 Pti~iDktdg~~iyLsk~s~~~eivtskss~mNv~ 124 (159)
T PF08603_consen 90 PTISIDKTDGCQIYLSKESLDTEIVTSKSSEMNVN 124 (159)
T ss_dssp SEEEEES-EEEEEE--CCCTT-EEEEES-EEEEEE
T ss_pred CEEEEeccccEEEEECcccccEEEEEEccccEEEE
Confidence 8999999999999998765 2344 345555443
No 8
>smart00673 CARP Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product.
Probab=97.11 E-value=0.00052 Score=46.53 Aligned_cols=35 Identities=26% Similarity=0.477 Sum_probs=31.2
Q ss_pred cCCcEEEEE--eeeEEEcceeeeEEEEE-ccCCCeEeC
Q 017913 257 VENCLLVLV--SHQIRIHFAKRSDFYLR-ARSRPIIED 291 (364)
Q Consensus 257 c~nc~ivva--c~QlRiH~~~~~~~yl~-~~S~PIIEd 291 (364)
|.+|++.+. |.++++|+|++|.||+. +.+.+.|++
T Consensus 1 C~~~~i~v~g~~~~v~id~~~~~~i~l~~~~~s~~i~~ 38 (38)
T smart00673 1 CESCTIQVSGKVNTISIDKCKKCSIYLGPVSGSPEIVN 38 (38)
T ss_pred CCcEEEEEeCccCEEEEECCCCeEEEECCceeEEEEEC
Confidence 789999998 99999999999999998 777777764
No 9
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=96.97 E-value=0.0025 Score=64.83 Aligned_cols=88 Identities=16% Similarity=0.269 Sum_probs=73.3
Q ss_pred ccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEe--eeEEEcceeeeEEEEEccC--C
Q 017913 211 IGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVS--HQIRIHFAKRSDFYLRARS--R 286 (364)
Q Consensus 211 ~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac--~QlRiH~~~~~~~yl~~~S--~ 286 (364)
...+.|-.|+||+|.|.|.+.++.|++|+.|-|++-.+-|-+-|-+|.+..+-+-- -+|-|..|.+|.+||.-.+ -
T Consensus 353 kqsvyIykC~~s~iqIkGKvNsItld~Ckk~svVfD~~Va~~eiinc~~v~iQv~g~~PtiSI~ktdGc~iYLSk~sL~~ 432 (480)
T KOG2675|consen 353 KQSVYIYKCSNSTIQIKGKVNSITLDNCKKTSVVFDDLVAIVEIINCQDVQIQVMGSVPTISIDKTDGCHIYLSKDSLDC 432 (480)
T ss_pred cceEEEEeccceEEEEeceeeeEEecCCceeeEEEeccceeeEEeeccceeeEEcccCCeEEEecCCCeeEEeccccccc
Confidence 36899999999999999999999999999999999888888999999998887754 4999999999999997543 3
Q ss_pred CeEe-CCCcceee
Q 017913 287 PIIE-DSNEVRFA 298 (364)
Q Consensus 287 PIIE-dC~~I~Fa 298 (364)
-|.- .++.|-+.
T Consensus 433 eIvtsKSsemNi~ 445 (480)
T KOG2675|consen 433 EIVTSKSSEMNIN 445 (480)
T ss_pred eEEeecccceeEe
Confidence 3443 34455443
No 10
>PF08603 CAP_C: Adenylate cyclase associated (CAP) C terminal; InterPro: IPR013912 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the C-terminal domain of CAP proteins, which is responsible for G-actin-binding. This domain has a superhelical structure, where the superhelix turns are made of two beta-strands each []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1K4Z_B 1KQ5_A 2B0R_A 1K8F_B.
Probab=95.83 E-value=0.052 Score=48.79 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=53.3
Q ss_pred CccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEe--eeEEEcceeeeEEEEEccCCCe--EeCCCcceee
Q 017913 228 GSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVS--HQIRIHFAKRSDFYLRARSRPI--IEDSNEVRFA 298 (364)
Q Consensus 228 ~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac--~QlRiH~~~~~~~yl~~~S~PI--IEdC~~I~Fa 298 (364)
.+-.+++|.+|.||+|.+--=--+|.|++|.+|.|++.. -.+.+-+|.++.+.+.. .-|. |+.|.|+.+.
T Consensus 30 ~~~qsVyI~~C~n~~i~IkgKvnsItid~C~k~~vv~ds~Is~vEvinc~~~~vQv~g-~vPti~iDktdg~~iy 103 (159)
T PF08603_consen 30 EMKQSVYIYNCKNSTIQIKGKVNSITIDNCKKCSVVFDSVISSVEVINCKSVQVQVLG-KVPTISIDKTDGCQIY 103 (159)
T ss_dssp -TT-EEEEEEEESEEEEEESEBSEEEEEEEEEEEEEECEBSSEEEEESEEEEEEEESS---SEEEEES-EEEEEE
T ss_pred CCCcEEEEEcccccEEEECceEEEEEEEcCCcEEEEEcCEEEEEEEEecCcEeEEEEc-cCCEEEEeccccEEEE
Confidence 456789999999999877444457999999999999865 48999999999998754 3443 5889999876
No 11
>KOG4416 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.76 E-value=0.071 Score=55.13 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=40.5
Q ss_pred cCCcEEEEEeeeEEEcceeeeEEEEEccCCCeEeCCCcceeecCCCCccch
Q 017913 257 VENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGI 307 (364)
Q Consensus 257 c~nc~ivvac~QlRiH~~~~~~~yl~~~S~PIIEdC~~I~Fapy~~~Y~~l 307 (364)
|.--.+-+.|||+-+.++++..+|---.-.|||-++.-+.|.||+..|.|-
T Consensus 454 c~~~~~~~~~~~~~vsDsq~~~~~~~~P~~~~~~~s~~v~~iPF~~e~eG~ 504 (605)
T KOG4416|consen 454 CASDPHDSLSHPLGVSDSQAEEAYAVDPDKPIIFNSFTVFFIPFNGEYEGS 504 (605)
T ss_pred cccCccccccccccccccccccceecCCCCceeeeeeEEEEeeccchhccc
Confidence 444444455677777888888888888889999999999999999888764
No 12
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=85.51 E-value=4.1 Score=42.08 Aligned_cols=81 Identities=9% Similarity=0.126 Sum_probs=60.7
Q ss_pred ccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEe--eeEEEcceeeeEEEEEccCCC-eEeCCCc
Q 017913 218 GLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVS--HQIRIHFAKRSDFYLRARSRP-IIEDSNE 294 (364)
Q Consensus 218 nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac--~QlRiH~~~~~~~yl~~~S~P-IIEdC~~ 294 (364)
|-.|-+|.....=.+++|-.|.||+|.+--=-.+|.|++|+.|-+|+.. -|+-|-+|.++.+-+.-.-.- -|..|.|
T Consensus 341 ~~~~~Vi~~~e~kqsvyIykC~~s~iqIkGKvNsItld~Ckk~svVfD~~Va~~eiinc~~v~iQv~g~~PtiSI~ktdG 420 (480)
T KOG2675|consen 341 NNKNLVIDDAELKQSVYIYKCSNSTIQIKGKVNSITLDNCKKTSVVFDDLVAIVEIINCQDVQIQVMGSVPTISIDKTDG 420 (480)
T ss_pred CCcceeeeeccccceEEEEeccceEEEEeceeeeEEecCCceeeEEEeccceeeEEeeccceeeEEcccCCeEEEecCCC
Confidence 3444555555566799999999999987433357999999999999864 689999999988876443222 3688999
Q ss_pred ceee
Q 017913 295 VRFA 298 (364)
Q Consensus 295 I~Fa 298 (364)
+.+.
T Consensus 421 c~iY 424 (480)
T KOG2675|consen 421 CHIY 424 (480)
T ss_pred eeEE
Confidence 8875
No 13
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=62.26 E-value=69 Score=24.55 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhc----CCh---------hhHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 017913 80 FNDFKNSITTQIESA----ADP---------SCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAH 146 (364)
Q Consensus 80 F~~~~~~ie~~L~~~----~~~---------~~l~~i~~~i~~L~k~l~das~~Lp~YD~r~~~~~L~~L~~~l~~~r~~ 146 (364)
|....+.|...|+.. ++. ..|+++..-|..|.-++. .+|+=+...|...|...+..+...+..
T Consensus 1 f~~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~----~~p~s~r~~~~~kl~~yr~~l~~lk~~ 76 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVR----SLPPSERNQYKSKLRSYRSELKKLKKE 76 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----TS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677666654 210 144455555555555544 348888888889999888888887765
Q ss_pred c
Q 017913 147 I 147 (364)
Q Consensus 147 l 147 (364)
+
T Consensus 77 l 77 (79)
T PF05008_consen 77 L 77 (79)
T ss_dssp H
T ss_pred h
Confidence 4
No 14
>PHA03161 hypothetical protein; Provisional
Probab=52.32 E-value=58 Score=29.12 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=51.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHh--hcCC-hhhHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 017913 70 SSSTSAFLSRFNDFKNSITTQIE--SAAD-PSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAH 146 (364)
Q Consensus 70 ~e~~~~F~~~F~~~~~~ie~~L~--~~~~-~~~l~~i~~~i~~L~k~l~das~~Lp~YD~r~~~~~L~~L~~~l~~~r~~ 146 (364)
-+.+.-|.++|+.....+...=. +..+ ..-+..+...|...++++. .|+.||.++.. .+.+|+.++.+++..
T Consensus 30 G~~s~lF~~Qf~~t~~~lr~~~~~~~~~~i~~~v~~l~~~I~~k~kE~~----~L~~fd~kkl~-~~E~L~drv~eLkee 104 (150)
T PHA03161 30 GEKNCIFLHQLDHTKKSLIKHENLKKQKSIEGMLQAVDLSIQEKKKELS----LLKAFDRHKLS-AAEDLQDKILELKED 104 (150)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcCHHHHH-HHHHHHHHHHHHHHH
Confidence 45678999999998888765422 1101 1245556667777777755 57788888765 788999999998887
Q ss_pred c
Q 017913 147 I 147 (364)
Q Consensus 147 l 147 (364)
+
T Consensus 105 l 105 (150)
T PHA03161 105 I 105 (150)
T ss_pred H
Confidence 6
No 15
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=51.22 E-value=1.2e+02 Score=23.94 Aligned_cols=72 Identities=11% Similarity=0.270 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhcc--CCC-hHHHHHHHHHHHHHHHHHHHHHhc
Q 017913 73 TSAFLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSY--CLP-SYEIRASLKTISDLRQNLDTLTAH 146 (364)
Q Consensus 73 ~~~F~~~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l~das~--~Lp-~YD~r~~~~~L~~L~~~l~~~r~~ 146 (364)
++.|+..|.-....+...|..... .=..+...|..+...|.+... .++ +||.-.|...|.++.+.+......
T Consensus 5 a~Gl~~~l~P~l~~~~~~l~el~~--sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~ 79 (92)
T PF14712_consen 5 AEGLLSLLEPDLDRLDQQLQELRQ--SQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHER 79 (92)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888775411 112344444444444443322 233 455555666666666666555443
No 16
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=50.65 E-value=1.4e+02 Score=33.16 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCChHHH------HHHHHHHHHHHHHHHHHHhc
Q 017913 101 TDISSSISDLEKLVAENSYCLPSYEI------RASLKTISDLRQNLDTLTAH 146 (364)
Q Consensus 101 ~~i~~~i~~L~k~l~das~~Lp~YD~------r~~~~~L~~L~~~l~~~r~~ 146 (364)
+.+..++..|-+.++.....|..++. +.+..+|+.|+..|++.+.+
T Consensus 610 e~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k 661 (717)
T PF10168_consen 610 EKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKK 661 (717)
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677676677766777878773 24444455555555554444
No 17
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.18 E-value=1.2e+02 Score=32.65 Aligned_cols=28 Identities=14% Similarity=0.443 Sum_probs=24.1
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHH
Q 017913 116 ENSYCLPSYEIRASLKTISDLRQNLDTL 143 (364)
Q Consensus 116 das~~Lp~YD~r~~~~~L~~L~~~l~~~ 143 (364)
...+.||.|-.++.++.|++|...+.+-
T Consensus 701 K~~Y~l~~~Q~~~iqsiL~~L~~~i~~~ 728 (741)
T KOG4460|consen 701 KPTYILSAYQRKCIQSILKELGEHIREM 728 (741)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3489999999999999999999887653
No 18
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=46.08 E-value=96 Score=26.96 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 017913 100 LTDISSSISDLEKLVAEN 117 (364)
Q Consensus 100 l~~i~~~i~~L~k~l~da 117 (364)
+.+.+.+|..|+..|.++
T Consensus 81 i~~sq~~i~~lK~~L~~a 98 (142)
T PF04048_consen 81 ISESQERIRELKESLQEA 98 (142)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 19
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=45.79 E-value=1e+02 Score=29.36 Aligned_cols=73 Identities=12% Similarity=0.193 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhccC--CChHHHHHHHHHHHHHHHHHHHHHhc
Q 017913 72 STSAFLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYC--LPSYEIRASLKTISDLRQNLDTLTAH 146 (364)
Q Consensus 72 ~~~~F~~~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l~das~~--Lp~YD~r~~~~~L~~L~~~l~~~r~~ 146 (364)
..+.|+..|.++...|...=... .+.|..|.++|..|...+.++-.- -.-....+..+.+..|...+++.|.+
T Consensus 29 ~ee~~L~e~~kE~~~L~~Er~~h--~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 29 NEEKCLEEYRKEMEELLQERMAH--VEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999888876443322 136777889999999988766221 23444556667888999999999988
No 20
>PF08919 F_actin_bind: F-actin binding; InterPro: IPR015015 The F-actin binding domain forms a compact bundle of four antiparallel alpha-helices, which are arranged in a left-handed topology. Binding of F-actin to the F-actin binding domain may result in cytoplasmic retention and subcellular distribution of the protein, as well as possible inhibition of protein function []. ; GO: 0004715 non-membrane spanning protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1ZZP_A 2KK1_A.
Probab=45.32 E-value=33 Score=29.07 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHh-ccCCCCCceecc
Q 017913 132 TISDLRQNLDTLTA-HIVPKKKFSFKN 157 (364)
Q Consensus 132 ~L~~L~~~l~~~r~-~l~PKkKF~Fk~ 157 (364)
.++.|......--. ...|+.||+|+-
T Consensus 40 ~~~~l~~~C~~yaD~~~~p~~KF~FRE 66 (110)
T PF08919_consen 40 KLQQLHSSCSGYADSIIQPHAKFAFRE 66 (110)
T ss_dssp HHHHHHHHHHHHGGG-S-CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCcchhhhHHH
Confidence 33444443333333 334555555543
No 21
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=45.32 E-value=2.4e+02 Score=27.96 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=44.9
Q ss_pred hhhhhHHHHHHHHHHHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhccCCC
Q 017913 43 KKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYCLP 122 (364)
Q Consensus 43 ~~~~~~~erl~~R~~~r~~~~~~~~~~~e~~~~F~~~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l~das~~Lp 122 (364)
+++.-|-+||..++++++... ....|...=++-.+.|+.-+..+ +....-...|..+|.+...-||
T Consensus 81 er~~~v~~ri~~~eqE~~R~~--------~~~~Fl~~~~qh~q~L~~~~~n~------~~~~~~~~~~~~~V~~~~~~l~ 146 (289)
T PF05149_consen 81 ERREEVERRIEMREQEAKRRT--------AAEEFLQAASQHKQRLRRCEENC------DRALSCAESLEEYVQEGCPKLP 146 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 444445556666655544432 25567766666666666666533 4444445555555555555555
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 017913 123 SYEIRASLKTISDLRQNL 140 (364)
Q Consensus 123 ~YD~r~~~~~L~~L~~~l 140 (364)
+| ....++.++.|....
T Consensus 147 ~~-~d~~~~~~~el~~~~ 163 (289)
T PF05149_consen 147 KK-HDKAQEALAELLLEE 163 (289)
T ss_pred HH-HHHHHHHHHHHHHHH
Confidence 55 455555555544433
No 22
>PF00669 Flagellin_N: Bacterial flagellin N-terminal helical region; InterPro: IPR001029 Bacterial flagella are responsible for motility and chemotaxis []. They comprise a basal body, a hook and a filament, the latter accounting for 98% of the mass []. Flagellin is the subunit protein that polymerises to form the flagellae [], the subunits being transported through the centre of the filament to the tip, where they then polymerise []. Both the N- and C- termini of the subunit protein, which are alpha-helical in structure [], are required to mediate polymerisation. Although no export or assembly consensus sequences have been identified, Ala, Val, Leu, Ile, Gly, Ser, Thr, Asn, Gln and Asp tend to make up around 90% of the sequence, Cys and Trp being absent []. This entry represents the N and C termini that come together to form the D0 and D1 structural domains []. These domains are responsible for flagellin's ability to polymerise into a filament. ; GO: 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum; PDB: 1IO1_A 1UCU_A 3A5X_A 3V47_C 2D4X_A 3PWX_B 3K8V_A 2ZBI_B 3K8W_A.
Probab=44.65 E-value=1.9e+02 Score=24.29 Aligned_cols=88 Identities=10% Similarity=0.144 Sum_probs=58.2
Q ss_pred CCchHHHHH-HHHHHHHHHHHHHhhcC--------ChhhHHHHHHHHHHHHHHHHh-hccCCChHHHHHHHHHHHHHHHH
Q 017913 70 SSSTSAFLS-RFNDFKNSITTQIESAA--------DPSCLTDISSSISDLEKLVAE-NSYCLPSYEIRASLKTISDLRQN 139 (364)
Q Consensus 70 ~e~~~~F~~-~F~~~~~~ie~~L~~~~--------~~~~l~~i~~~i~~L~k~l~d-as~~Lp~YD~r~~~~~L~~L~~~ 139 (364)
..+.+.... .++.+...++.-+.... ....|..+..-+.+++..+.. ...-...-+++.+...|+.|.+.
T Consensus 39 d~p~~~~~~~~l~~~~~~~~~~~~n~~~~~~~l~~~~~al~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~ 118 (139)
T PF00669_consen 39 DDPAAASRALSLRSQISRLEQYQRNIDDAKSRLSTAETALSSISDILQRARELAVQAANGTNSDEDRQAIAAELQQLLDQ 118 (139)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTS-HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHhHHHHHHHHHHH
Confidence 455555544 67777777776665431 112677777777777666544 46677777999999999999999
Q ss_pred HHHHHhccCCCCCceecc
Q 017913 140 LDTLTAHIVPKKKFSFKN 157 (364)
Q Consensus 140 l~~~r~~l~PKkKF~Fk~ 157 (364)
|...-.....-.+|=|.+
T Consensus 119 l~~~~~~t~~~G~~lF~G 136 (139)
T PF00669_consen 119 LNQIANNTQFNGRYLFSG 136 (139)
T ss_dssp HHHHHHHBECTTEETTSS
T ss_pred HHHHHHhCCcCCeeeeCC
Confidence 986554434556666654
No 23
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=44.62 E-value=1.7e+02 Score=30.40 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=20.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhhcC
Q 017913 39 ETLQKKHQSMIHRLAVRHQTRLETRK 64 (364)
Q Consensus 39 ~~~~~~~~~~~erl~~R~~~r~~~~~ 64 (364)
+++++-|++++|-|++-|+.-.++.+
T Consensus 344 AaMEetHQkkiEdLQRqHqRELekLr 369 (593)
T KOG4807|consen 344 AAMEETHQKKIEDLQRQHQRELEKLR 369 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888899999999988876666554
No 24
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=42.06 E-value=2.6e+02 Score=26.85 Aligned_cols=96 Identities=11% Similarity=0.138 Sum_probs=44.8
Q ss_pred hhhhhHHHHHHHHHHHHhhhc---CCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhcc
Q 017913 43 KKHQSMIHRLAVRHQTRLETR---KPDSPDSSSTSAFLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSY 119 (364)
Q Consensus 43 ~~~~~~~erl~~R~~~r~~~~---~~~~~~~e~~~~F~~~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l~das~ 119 (364)
++...-++++.++-.+.+.+. +.+. ...+.=.+.+.++++..+..|+...+...+.++..+++.+++..+...
T Consensus 34 ~k~~~e~e~~~~~~~~~~~e~e~le~qv---~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le- 109 (239)
T COG1579 34 KKAKAELEALNKALEALEIELEDLENQV---SQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLE- 109 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH-
Confidence 444566677777766666654 1000 001122334444444555555433444455555555555555544432
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhc
Q 017913 120 CLPSYEIRASLKTISDLRQNLDTLTAH 146 (364)
Q Consensus 120 ~Lp~YD~r~~~~~L~~L~~~l~~~r~~ 146 (364)
+++....+.+..|++.+...+.+
T Consensus 110 ----~el~~l~~~~~~l~~~i~~l~~~ 132 (239)
T COG1579 110 ----DELAELMEEIEKLEKEIEDLKER 132 (239)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444444444444444433
No 25
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=40.70 E-value=2.5e+02 Score=33.24 Aligned_cols=99 Identities=15% Similarity=0.280 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHHHhhhcC--CCCCCCCchHHHHHHHH---HHHHHHHHHHhhc-CChhhHHHHHHHHHHHHHHHHhhcc
Q 017913 46 QSMIHRLAVRHQTRLETRK--PDSPDSSSTSAFLSRFN---DFKNSITTQIESA-ADPSCLTDISSSISDLEKLVAENSY 119 (364)
Q Consensus 46 ~~~~erl~~R~~~r~~~~~--~~~~~~e~~~~F~~~F~---~~~~~ie~~L~~~-~~~~~l~~i~~~i~~L~k~l~das~ 119 (364)
-.|+..|+.|-..-.+.++ +++-. ...|.+.|. ++...|...|... .+.+.++++...+..|++.|.++..
T Consensus 1170 D~il~~L~~rt~rl~~~A~~l~~tGv---~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e 1246 (1758)
T KOG0994|consen 1170 DAILQELALRTHRLINRAKELKQTGV---LGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTE 1246 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC---chhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677778877664444442 12212 235555554 4445555555432 2334666777777777777665554
Q ss_pred CCCh----------------HHHHHHHHHHHHHHHHHHHHHhcc
Q 017913 120 CLPS----------------YEIRASLKTISDLRQNLDTLTAHI 147 (364)
Q Consensus 120 ~Lp~----------------YD~r~~~~~L~~L~~~l~~~r~~l 147 (364)
-||. -|+...+.....|+....++++.+
T Consensus 1247 ~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~ 1290 (1758)
T KOG0994|consen 1247 DLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQL 1290 (1758)
T ss_pred hhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 455555555555555555555543
No 26
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=38.71 E-value=2.6e+02 Score=29.44 Aligned_cols=78 Identities=9% Similarity=0.093 Sum_probs=49.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhc----C-ChhhHHHHHHHHHHHHHHHHhhc-------------cCCChHHHHHHHH
Q 017913 70 SSSTSAFLSRFNDFKNSITTQIESA----A-DPSCLTDISSSISDLEKLVAENS-------------YCLPSYEIRASLK 131 (364)
Q Consensus 70 ~e~~~~F~~~F~~~~~~ie~~L~~~----~-~~~~l~~i~~~i~~L~k~l~das-------------~~Lp~YD~r~~~~ 131 (364)
+...+.|.++..++...|++.|-.+ . -..-||-|...|..||++|.-.- --++.-+..-...
T Consensus 467 e~~a~~~~sa~~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~ 546 (583)
T KOG3809|consen 467 ESDADKIMSAEREKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYN 546 (583)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHH
Confidence 3446788888888888888887644 1 12367777788888887776321 1122333334556
Q ss_pred HHHHHHHHHHHHHhcc
Q 017913 132 TISDLRQNLDTLTAHI 147 (364)
Q Consensus 132 ~L~~L~~~l~~~r~~l 147 (364)
.|..|++.|++.+..+
T Consensus 547 ~la~lq~~I~d~~e~i 562 (583)
T KOG3809|consen 547 ILANLQKEINDTKEEI 562 (583)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777776654
No 27
>PLN02939 transferase, transferring glycosyl groups
Probab=38.28 E-value=1.6e+02 Score=34.03 Aligned_cols=92 Identities=13% Similarity=0.177 Sum_probs=54.8
Q ss_pred hhhhhHHHHHHHHHHHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhc----CChhhHHHHHHHHHHHHHHHHhhc
Q 017913 43 KKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLSRFNDFKNSITTQIESA----ADPSCLTDISSSISDLEKLVAENS 118 (364)
Q Consensus 43 ~~~~~~~erl~~R~~~r~~~~~~~~~~~e~~~~F~~~F~~~~~~ie~~L~~~----~~~~~l~~i~~~i~~L~k~l~das 118 (364)
+..+.+|++..+..++-..-. .-...++.+...||+.|... -....++-+++++..|...+..+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (977)
T PLN02939 303 ENLQDLLDRATNQVEKAALVL-----------DQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASD 371 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-----------ccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhH
Confidence 344666776666544332221 11234556666666666543 123356666677777777777666
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 017913 119 YCLPSYEIRASLKTISDLRQNLDTLTAH 146 (364)
Q Consensus 119 ~~Lp~YD~r~~~~~L~~L~~~l~~~r~~ 146 (364)
.-+-+| .+.|++.++.++..+.....+
T Consensus 372 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 398 (977)
T PLN02939 372 HEIHSY-IQLYQESIKEFQDTLSKLKEE 398 (977)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 666665 567777788877777776554
No 28
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=36.25 E-value=1.1e+02 Score=29.62 Aligned_cols=83 Identities=13% Similarity=0.226 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC---------hhhHHHHHHHHHHHHHHHHhh-ccCCChHHHHHHHHHHHHHHHHHHHH-
Q 017913 75 AFLSRFNDFKNSITTQIESAAD---------PSCLTDISSSISDLEKLVAEN-SYCLPSYEIRASLKTISDLRQNLDTL- 143 (364)
Q Consensus 75 ~F~~~F~~~~~~ie~~L~~~~~---------~~~l~~i~~~i~~L~k~l~da-s~~Lp~YD~r~~~~~L~~L~~~l~~~- 143 (364)
..++=|.+-++..+..+...|- .+.++++..++..++..+.+. ..||..||+-.- +.+++. -.....
T Consensus 49 ~~L~~f~~lk~~A~r~~~~~G~rFlgG~aVP~~~~~~l~~~L~~i~~eF~~~k~~Fl~~Yd~~i~-~w~~~~-pew~~~I 126 (257)
T PF11348_consen 49 DALKPFSKLKKRAERLCLKVGVRFLGGYAVPEDKAEELAEELEDIKTEFEQEKQDFLANYDQAIE-EWIDRH-PEWADII 126 (257)
T ss_pred HHcCHHHHHHHHHHHHHHHcCCcccceeEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHC-hHHHHHH
Confidence 4455677777777777765422 248889999999999988875 889999997543 344442 222222
Q ss_pred HhccCC----CCCceeccCC
Q 017913 144 TAHIVP----KKKFSFKNKP 159 (364)
Q Consensus 144 r~~l~P----KkKF~Fk~k~ 159 (364)
|....| +++|+|.-..
T Consensus 127 r~~~~~~~~v~~r~~F~~~~ 146 (257)
T PF11348_consen 127 RRAAPPAEDVRSRFSFSWQA 146 (257)
T ss_pred HhcCCCHHHHHhhccceeEE
Confidence 332222 4677777753
No 29
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=36.20 E-value=1e+02 Score=28.12 Aligned_cols=49 Identities=18% Similarity=0.383 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHhcc
Q 017913 99 CLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHI 147 (364)
Q Consensus 99 ~l~~i~~~i~~L~k~l~das~~Lp~YD~r~~~~~L~~L~~~l~~~r~~l 147 (364)
+++.+.++|++|+..++.-...+-+|.+=+....|+++.+.|+.+.+.+
T Consensus 93 ~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~ 141 (175)
T PRK13182 93 QLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARL 141 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5678888899999999998999999999999999999999998887776
No 30
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=34.96 E-value=3e+02 Score=30.68 Aligned_cols=68 Identities=12% Similarity=0.258 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHH------hhccCCChHHHHHHHHHHHHHHHHHHHHHhcc
Q 017913 78 SRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVA------ENSYCLPSYEIRASLKTISDLRQNLDTLTAHI 147 (364)
Q Consensus 78 ~~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l~------das~~Lp~YD~r~~~~~L~~L~~~l~~~r~~l 147 (364)
+.|.++...++++|... ...+++++.+++..+..++ ..+..||.+-.+..++.|+...+.|++...++
T Consensus 635 r~~~~EL~~~~~~l~~l--~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~i 708 (717)
T PF10168_consen 635 REFKKELERMKDQLQDL--KASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQI 708 (717)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555433 1245555555554444332 12568888888888888888888888876554
No 31
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=34.84 E-value=1.9e+02 Score=22.86 Aligned_cols=50 Identities=12% Similarity=0.256 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCChHH-----HHHHHHHHHHHHHHHHHHHhccC
Q 017913 99 CLTDISSSISDLEKLVAENSYCLPSYE-----IRASLKTISDLRQNLDTLTAHIV 148 (364)
Q Consensus 99 ~l~~i~~~i~~L~k~l~das~~Lp~YD-----~r~~~~~L~~L~~~l~~~r~~l~ 148 (364)
++.++..++..||..|++...-+|..+ +..-..+|..|+.++++...-|.
T Consensus 12 dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 12 DIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344555666666666766666666643 33444556666666666655554
No 32
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=34.57 E-value=4e+02 Score=25.75 Aligned_cols=35 Identities=9% Similarity=0.199 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHH
Q 017913 79 RFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVA 115 (364)
Q Consensus 79 ~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l~ 115 (364)
.|..+.+.++..++.. ...++.+..++.++...++
T Consensus 132 ~~~~~~~~~~~~i~~l--~~~~~~~~~~~~~~~~~~~ 166 (301)
T PF14362_consen 132 SFDAQIARLDAEIAAL--QAEIDQLEKEIDRAQQEAQ 166 (301)
T ss_pred HhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444322 1133444444444444444
No 33
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=33.52 E-value=1.5e+02 Score=26.46 Aligned_cols=73 Identities=19% Similarity=0.323 Sum_probs=44.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhc---cCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 017913 70 SSSTSAFLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENS---YCLPSYEIRASLKTISDLRQNLDTLTAH 146 (364)
Q Consensus 70 ~e~~~~F~~~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l~das---~~Lp~YD~r~~~~~L~~L~~~l~~~r~~ 146 (364)
-+.+.-|..+|...+.++.+.=. . ....++...+..+...+.+-. .-|+.+|.++. +.+.+|+..+.++++.
T Consensus 30 G~~~~LF~~Qf~~t~~~~r~~~~-~---r~~~~~~~~v~~~~~~i~~k~~El~~L~~~d~~kv-~~~E~L~d~v~eLkee 104 (146)
T PF05852_consen 30 GKSSSLFRAQFQFTKKSLRSHNS-L---REECEIKNKVSSLETEISEKKKELSHLKKFDRKKV-EDLEKLTDRVEELKEE 104 (146)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHH
Confidence 34577899999998887765421 1 123334444444444443331 23455776654 4788888888888887
Q ss_pred c
Q 017913 147 I 147 (364)
Q Consensus 147 l 147 (364)
+
T Consensus 105 l 105 (146)
T PF05852_consen 105 L 105 (146)
T ss_pred H
Confidence 6
No 34
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=33.17 E-value=2.6e+02 Score=25.24 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhc------CChhhHHHHHHHHHHHHHHHHhhccC
Q 017913 79 RFNDFKNSITTQIESA------ADPSCLTDISSSISDLEKLVAENSYC 120 (364)
Q Consensus 79 ~F~~~~~~ie~~L~~~------~~~~~l~~i~~~i~~L~k~l~das~~ 120 (364)
.|-.+++.|...+... .+...+.....+|+.|..-+.+++.-
T Consensus 22 aYv~eKK~Insl~~~v~~l~nk~d~~~yknyk~ki~eLke~lK~~~NA 69 (160)
T PF03978_consen 22 AYVEEKKEINSLIEDVSKLNNKSDAEAYKNYKKKINELKEDLKDVSNA 69 (160)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4566666676666543 33447777777788877777777554
No 35
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=32.90 E-value=2.4e+02 Score=24.41 Aligned_cols=70 Identities=10% Similarity=0.180 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhccCCC--hHHHHHHHHHHHHHHHHHHHHH
Q 017913 73 TSAFLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYCLP--SYEIRASLKTISDLRQNLDTLT 144 (364)
Q Consensus 73 ~~~F~~~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l~das~~Lp--~YD~r~~~~~L~~L~~~l~~~r 144 (364)
.+.++......++.|..+|+... ..+|+..+-....++.|++....+. -+|....+..+..|..+|.+..
T Consensus 52 l~~vs~~l~~tKkhLsqRId~vd--~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 52 LEQVSESLSSTKKHLSQRIDRVD--DKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666667777777777776542 2556666666666666666544433 5678888888888888887654
No 36
>PRK12718 flgL flagellar hook-associated protein FlgL; Provisional
Probab=30.61 E-value=4e+02 Score=28.48 Aligned_cols=83 Identities=12% Similarity=0.187 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHh-hccCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCce
Q 017913 76 FLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAE-NSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKKFS 154 (364)
Q Consensus 76 F~~~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l~d-as~~Lp~YD~r~~~~~L~~L~~~l~~~r~~l~PKkKF~ 154 (364)
-..+|++-+..++..|... ...|+.+..-|++++.++-. +..-+.+=|++.+..+|+.|.+.|-..-..--.-.+|=
T Consensus 58 ~~eQY~~Ni~~A~~~L~~~--EstL~sv~~~L~rirel~VqA~Ngt~s~~dR~aia~El~~l~~qL~~laNs~d~nG~yl 135 (510)
T PRK12718 58 MNSNYDANRKQAEQALGAQ--TNTLQSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGLANATDGNGQYL 135 (510)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhccCcCCcee
Confidence 3345555555566666532 23677788888888755555 46788999999999999999999888765544456776
Q ss_pred eccCCC
Q 017913 155 FKNKPV 160 (364)
Q Consensus 155 Fk~k~~ 160 (364)
|.+-+.
T Consensus 136 FsG~~~ 141 (510)
T PRK12718 136 FSGYKG 141 (510)
T ss_pred cCCCCC
Confidence 766443
No 37
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=29.19 E-value=94 Score=31.79 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 017913 99 CLTDISSSISDLEKLVAENSYCLPSYEIRASLKTIS 134 (364)
Q Consensus 99 ~l~~i~~~i~~L~k~l~das~~Lp~YD~r~~~~~L~ 134 (364)
++..+++++..|+.+.. ..||--||+|+..+++.
T Consensus 250 ~i~~lq~EV~~LEeLsr--qLFLE~~eLr~~ker~~ 283 (462)
T KOG2417|consen 250 DIKLLQQEVEPLEELSR--QLFLELVELRQMKERVA 283 (462)
T ss_pred hHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 66777777776666543 45787888888776554
No 38
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=28.84 E-value=3.9e+02 Score=27.14 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=10.3
Q ss_pred hhhhhhhHHHHHHHHHH
Q 017913 41 LQKKHQSMIHRLAVRHQ 57 (364)
Q Consensus 41 ~~~~~~~~~erl~~R~~ 57 (364)
.+......+||++.|++
T Consensus 246 l~~~i~~~lekI~sREk 262 (359)
T PF10498_consen 246 LQQDISKTLEKIESREK 262 (359)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445566777777665
No 39
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.56 E-value=2.5e+02 Score=26.66 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCc
Q 017913 126 IRASLKTISDLRQNLDTLTAHIVPKKKF 153 (364)
Q Consensus 126 ~r~~~~~L~~L~~~l~~~r~~l~PKkKF 153 (364)
++.++.+|++|+++|..+.+.-..+..|
T Consensus 57 Lk~a~~~i~eLe~ri~~lq~~~~~sgsF 84 (233)
T COG3416 57 LKKASTQIKELEKRIAILQAGEAGSGSF 84 (233)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcch
Confidence 3566778888888888776653344444
No 40
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=26.32 E-value=2.2e+02 Score=20.54 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHH
Q 017913 78 SRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLV 114 (364)
Q Consensus 78 ~~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l 114 (364)
-.|+....+.-+.|. ..|+++++++..|++-+
T Consensus 15 v~FQ~~v~~~lq~Lt-----~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 15 VAFQNKVTSALQSLT-----QKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcc
Confidence 457776666665665 24788888888887643
No 41
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=25.93 E-value=5.6e+02 Score=24.11 Aligned_cols=73 Identities=16% Similarity=0.263 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc------CChhhHHHHHHHHHHHHHHHHhhccCCChHHHHH---HHHHHHHHHHHHHHH
Q 017913 73 TSAFLSRFNDFKNSITTQIESA------ADPSCLTDISSSISDLEKLVAENSYCLPSYEIRA---SLKTISDLRQNLDTL 143 (364)
Q Consensus 73 ~~~F~~~F~~~~~~ie~~L~~~------~~~~~l~~i~~~i~~L~k~l~das~~Lp~YD~r~---~~~~L~~L~~~l~~~ 143 (364)
...+-..|......+++.+... .-...++.+..++..|...+.+-...+|...-.. ....|..|...++.-
T Consensus 61 ~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~E 140 (247)
T PF06705_consen 61 NKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENE 140 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777766543 1123788899999999999998888888765554 556666666666655
Q ss_pred Hh
Q 017913 144 TA 145 (364)
Q Consensus 144 r~ 145 (364)
|.
T Consensus 141 r~ 142 (247)
T PF06705_consen 141 RN 142 (247)
T ss_pred HH
Confidence 43
No 42
>smart00808 FABD F-actin binding domain (FABD). FABD is the F-actin binding domain of Bcr-Abl and its cellular counterpart c-Abl. The Bcr-Abl tyrosine kinase causes different forms of leukemia in humans. Depending on its position within the cell, Bcr-Abl differentially affects cellular growth. The FABD forms a compact left-handed four-helix bundle in solution.
Probab=25.80 E-value=1.3e+02 Score=26.07 Aligned_cols=40 Identities=13% Similarity=-0.012 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhh-ccCCChHHHHHHHHHHHHHHHHHHHHH
Q 017913 105 SSISDLEKLVAEN-SYCLPSYEIRASLKTISDLRQNLDTLT 144 (364)
Q Consensus 105 ~~i~~L~k~l~da-s~~Lp~YD~r~~~~~L~~L~~~l~~~r 144 (364)
..+..|..+...- -..+|+...=++.+.+.+|...+.++|
T Consensus 55 D~~~~L~~~C~~yad~i~~phsKF~FRElvsrlE~~~r~Lr 95 (126)
T smart00808 55 DKGHQLHSTCSGYADQIPQPRSKFQFRELVSRLELQLRELR 95 (126)
T ss_pred HHHHHHHHhhhhHHhcCCCccchhHHHHHHHHHHHHHHHHH
Confidence 3444444444332 222677777777777777777777776
No 43
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=25.25 E-value=3.2e+02 Score=21.09 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 017913 76 FLSRFNDFKNSITTQIE 92 (364)
Q Consensus 76 F~~~F~~~~~~ie~~L~ 92 (364)
|...|-.+..+|...|.
T Consensus 1 ~~~~f~~~v~~i~~~i~ 17 (103)
T PF00804_consen 1 FMPEFFDEVQEIREDID 17 (103)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45667777777776665
No 44
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.65 E-value=3.2e+02 Score=26.76 Aligned_cols=66 Identities=27% Similarity=0.391 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 017913 73 TSAFLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTA 145 (364)
Q Consensus 73 ~~~F~~~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l~das~~Lp~YD~r~~~~~L~~L~~~l~~~r~ 145 (364)
.+.=+.+-+.....|+..|+.. ...++++..++.++++.++..-. +++.++..|+.|.+.|.+...
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L--~~qi~~~~~k~~~~~~~i~~~~~-----eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESL--DNQIEEIQSKIDELQKEIDQSKA-----EIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777644 12566777777777777665422 335556666666666655443
No 45
>PRK10807 paraquat-inducible protein B; Provisional
Probab=24.50 E-value=3.4e+02 Score=29.17 Aligned_cols=99 Identities=14% Similarity=0.205 Sum_probs=52.8
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhhH-HHHHHHHHHHHHHHHhhcc
Q 017913 41 LQKKHQSMIHRLAVRHQTRLETRKPDSPDSSSTSAFLSRFNDFKNSITTQIESAADPSCL-TDISSSISDLEKLVAENSY 119 (364)
Q Consensus 41 ~~~~~~~~~erl~~R~~~r~~~~~~~~~~~e~~~~F~~~F~~~~~~ie~~L~~~~~~~~l-~~i~~~i~~L~k~l~das~ 119 (364)
.+++-..+++|+++.--+....-- .+.....+....+++...+.++..+... +.+.+ +++.+.+.+|++.+++...
T Consensus 418 l~~~~~~il~kin~lple~i~~~l--~~tL~~~~~tl~~l~~~l~~l~~ll~~~-~~~~Lp~~L~~TL~~l~~~l~~~~~ 494 (547)
T PRK10807 418 IQQKLMEALDKINNLPLNPMIEQA--TSTLSESQRTMRELQTTLDSLNKITSSQ-SMQQLPADMQKTLRELNRSMQGFQP 494 (547)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhCCH-HHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 344555666666655322211100 0011224556666666666666555321 22244 7778889999999999888
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHH
Q 017913 120 CLPSYEIRASLKTISDLRQNLDTLT 144 (364)
Q Consensus 120 ~Lp~YD~r~~~~~L~~L~~~l~~~r 144 (364)
..|.| +..++.|++|++.+.+.|
T Consensus 495 ~s~~~--~~l~~tl~~l~~~~r~lr 517 (547)
T PRK10807 495 GSPAY--NKMVADMQRLDQVLRELQ 517 (547)
T ss_pred CChHH--HHHHHHHHHHHHHHHHHH
Confidence 88877 333344444444444433
No 46
>PRK08870 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=24.28 E-value=7.5e+02 Score=25.01 Aligned_cols=84 Identities=13% Similarity=0.165 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHhhc--------CChhhHHHHHHHHHHHHHHHHhh-ccCCChHHHHHHHHHHHHHHHHHHHHHhccC
Q 017913 78 SRFNDFKNSITTQIESA--------ADPSCLTDISSSISDLEKLVAEN-SYCLPSYEIRASLKTISDLRQNLDTLTAHIV 148 (364)
Q Consensus 78 ~~F~~~~~~ie~~L~~~--------~~~~~l~~i~~~i~~L~k~l~da-s~~Lp~YD~r~~~~~L~~L~~~l~~~r~~l~ 148 (364)
..++.+...++.-.... .....|+.+...+.+++..+-.+ ..-+.+.|+.....+++.|.+.|-..-..-.
T Consensus 50 ~~l~~~~~~~~qy~~n~~~~~~~l~~~~~~L~~i~~~l~~~r~~~v~a~n~t~s~~~r~aia~e~~~l~~~l~~~~Nt~~ 129 (404)
T PRK08870 50 VNLSQQSALLDQYTKNINLARNRLQQEESTLGSVEDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLLNLANSKD 129 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35556555555554433 11237888888888888777654 5678899999999999999988877655433
Q ss_pred CCCCceeccCCCC
Q 017913 149 PKKKFSFKNKPVK 161 (364)
Q Consensus 149 PKkKF~Fk~k~~~ 161 (364)
...+|=|.+....
T Consensus 130 ~~G~ylF~G~~t~ 142 (404)
T PRK08870 130 GSGNYLFAGTQSG 142 (404)
T ss_pred CCCceecCCCCCC
Confidence 4578889887654
No 47
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=23.71 E-value=3.3e+02 Score=26.91 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHH
Q 017913 99 CLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQN 139 (364)
Q Consensus 99 ~l~~i~~~i~~L~k~l~das~~Lp~YD~r~~~~~L~~L~~~ 139 (364)
...++.++|.++++.+.....+ +.+|+......++.|+..
T Consensus 252 ~k~~l~~eI~e~~~~~~~~r~~-t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 252 QKQELLAEIAEAEKIREECRGW-TRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 3344444455555544444333 566666666555555543
No 48
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=23.50 E-value=1.9e+02 Score=21.75 Aligned_cols=35 Identities=9% Similarity=0.280 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhc
Q 017913 79 RFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENS 118 (364)
Q Consensus 79 ~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l~das 118 (364)
.|.+++..+-..|+ ..++++...+..|.+-|..+.
T Consensus 2 ~Fe~qR~~Li~eI~-----~~~e~vl~nlN~LNRsLE~~i 36 (58)
T PF08649_consen 2 YFERQRDRLIQEIS-----ESMESVLNNLNALNRSLESVI 36 (58)
T ss_pred hHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHH
Confidence 58888888888887 347788888888888776543
No 49
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=23.37 E-value=2.8e+02 Score=25.12 Aligned_cols=60 Identities=18% Similarity=0.296 Sum_probs=36.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHhc-----cCCCCCceeccCC
Q 017913 96 DPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAH-----IVPKKKFSFKNKP 159 (364)
Q Consensus 96 ~~~~l~~i~~~i~~L~k~l~das~~Lp~YD~r~~~~~L~~L~~~l~~~r~~-----l~PKkKF~Fk~k~ 159 (364)
++.+|-++..+|+.....+...+.- .+.+..++|+.|+++-....++ .+-..+|.|+..+
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~----kL~~I~eQi~~Lq~QA~~ile~~~~~~~l~~A~cnF~pip 92 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCN----KLEVIAEQIRFLQEQARKILEEAERNEELHHAKCNFEPIP 92 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCceecC
Confidence 4446666666666666555543221 4456667777777665554433 4567899999865
No 50
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.99 E-value=3.7e+02 Score=25.14 Aligned_cols=53 Identities=11% Similarity=0.220 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHH
Q 017913 78 SRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLT 144 (364)
Q Consensus 78 ~~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l~das~~Lp~YD~r~~~~~L~~L~~~l~~~r 144 (364)
..++++.+++++.+++. .+.+.++.++-++|+..+.. .+..+..|..+++..+
T Consensus 114 ~~~~~~~~~l~~~~~~~--~~~~~~L~~~n~~L~~~l~~------------~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 114 NTWNQRTAEMQQKVAQS--DSVINGLKEENQKLKNQLIV------------AQKKVDAANLQLDDKQ 166 (206)
T ss_pred hHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
Confidence 44566666666666533 12444555566666555543 4445555555555544
No 51
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=22.82 E-value=5.6e+02 Score=25.87 Aligned_cols=64 Identities=9% Similarity=0.232 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHhcc
Q 017913 78 SRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHI 147 (364)
Q Consensus 78 ~~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l~das~~Lp~YD~r~~~~~L~~L~~~l~~~r~~l 147 (364)
+.|.++..++.+..+.|. ..++.-..++.+|.+.+.....-+++ ...+.+++|++.+.+++..+
T Consensus 21 r~Y~qKleel~~lQ~~C~--ssI~~QkkrLk~L~~sLk~~~~~~~~----e~~~~i~~L~~~Ik~r~~~l 84 (330)
T PF07851_consen 21 RSYKQKLEELSKLQDKCS--SSISHQKKRLKELKKSLKRCKKSLSA----EERELIEKLEEDIKERRCQL 84 (330)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccCCCh----hHHHHHHHHHHHHHHHHhhH
Confidence 445555555555555542 24555555666666665554333443 44566677777777776543
No 52
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=22.53 E-value=8.4e+02 Score=24.91 Aligned_cols=73 Identities=14% Similarity=0.241 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhccCCChHHH-HHHHHHHHHHHHHHHHHHhc----cC
Q 017913 74 SAFLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYCLPSYEI-RASLKTISDLRQNLDTLTAH----IV 148 (364)
Q Consensus 74 ~~F~~~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l~das~~Lp~YD~-r~~~~~L~~L~~~l~~~r~~----l~ 148 (364)
..=+..+.++.+.|+...... ..+..+...|...+..+++... =|+ .-+++.|..|.+++.++.++ |+
T Consensus 32 ~~~~~~lske~a~l~~iv~~~---~~~~~~~~~l~~a~~~l~~~~D----~em~ema~~Ei~~~~~~~~~le~~L~~lLl 104 (363)
T COG0216 32 PDEYRKLSKEYAELEPIVEKY---REYKKAQEDLEDAKEMLAEEKD----PEMREMAEEEIKELEAKIEELEEELKILLL 104 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344567777777777776643 3556666777777777775411 111 23445555555555444433 56
Q ss_pred CCCCc
Q 017913 149 PKKKF 153 (364)
Q Consensus 149 PKkKF 153 (364)
||-..
T Consensus 105 PkDpn 109 (363)
T COG0216 105 PKDPN 109 (363)
T ss_pred CCCCC
Confidence 76543
No 53
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=21.38 E-value=1.1e+02 Score=25.45 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=30.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--eeccCC
Q 017913 121 LPSYEIRASLKTISDLRQNLDTLTAHIVPKKKF--SFKNKP 159 (364)
Q Consensus 121 Lp~YD~r~~~~~L~~L~~~l~~~r~~l~PKkKF--~Fk~k~ 159 (364)
+=.||+.-..++|++|.+..++.-..|.|+..| +|.+|-
T Consensus 28 vi~~s~~pi~E~i~kLe~~addL~nsLdP~~~~l~S~PgRE 68 (96)
T PRK00965 28 IIVVDMDPIEEEINKLEALADDLENSLDPRNPPLNSYPGRE 68 (96)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHhccCCCCChhhcCCCCc
Confidence 335677777888999999899998889888877 566653
No 54
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=21.37 E-value=1.8e+02 Score=25.52 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=26.7
Q ss_pred eCccceEEEecccCcEEEEeeccceEEEEecCC-cEEEEEee
Q 017913 227 VGSVNALFINQLKNCKVYVGPVMGSILIEEVEN-CLLVLVSH 267 (364)
Q Consensus 227 ~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~n-c~ivvac~ 267 (364)
.|.++|+.|.|-....+++ .+|-|+++.+ ..+...|.
T Consensus 82 fG~pGAi~V~N~h~~EffL----ksitLe~~p~~g~v~F~CN 119 (137)
T cd01751 82 FGPPGAVLVKNEHHSEFFL----KSITLEGFGGSGTITFVCN 119 (137)
T ss_pred cCCccEEEEEECCCceEEE----EEEEEeCCCCCccEEEEcc
Confidence 3688888888888888887 5666777665 55555554
No 55
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=21.30 E-value=2.4e+02 Score=23.26 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCChHHHH------HHHHHHHHHHHHHHHHHhcc
Q 017913 99 CLTDISSSISDLEKLVAENSYCLPSYEIR------ASLKTISDLRQNLDTLTAHI 147 (364)
Q Consensus 99 ~l~~i~~~i~~L~k~l~das~~Lp~YD~r------~~~~~L~~L~~~l~~~r~~l 147 (364)
..+++...+..|...+.++....|+=... .|++-|+.|...|+.+...+
T Consensus 22 ~~~e~~~~l~~m~~~a~~ak~~~P~~~~~d~~~~~~Y~~Gl~~li~~id~a~~~~ 76 (103)
T PF07361_consen 22 DAAEMKTALDKMRAAAEDAKQGKPPKLEGDSAEVKDYQEGLDKLIDQIDKAEALA 76 (103)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTS-GGGTTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888999888888777544333 59999999998888877653
No 56
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=20.88 E-value=6.5e+02 Score=23.00 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHhh-ccCCChHHHHHHHHHHHHHHHHHHHHHhcc
Q 017913 99 CLTDISSSISDLEKLVAEN-SYCLPSYEIRASLKTISDLRQNLDTLTAHI 147 (364)
Q Consensus 99 ~l~~i~~~i~~L~k~l~da-s~~Lp~YD~r~~~~~L~~L~~~l~~~r~~l 147 (364)
.++.+..++..|+..+.++ ..--..++.....+.++.|++.+.++++++
T Consensus 77 ~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 77 EIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKEL 126 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544 222223444455566666666666666555
No 57
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=20.87 E-value=5.4e+02 Score=25.05 Aligned_cols=54 Identities=13% Similarity=0.231 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHH
Q 017913 47 SMIHRLAVRHQTRLETRKPDSPDSSSTSAFLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVA 115 (364)
Q Consensus 47 ~~~erl~~R~~~r~~~~~~~~~~~e~~~~F~~~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l~ 115 (364)
.+.+-|..++..+.+.++ +.-+.|-..+......|+.++. ++.++|...+..|+
T Consensus 52 ~~i~~le~~~~~~l~~ak------~eLqe~eek~e~~l~~Lq~ql~---------~l~akI~k~~~el~ 105 (258)
T PF15397_consen 52 TAIDILEYSNHKQLQQAK------AELQEWEEKEESKLSKLQQQLE---------QLDAKIQKTQEELN 105 (258)
T ss_pred HHHHHHHccChHHHHHHH------HHHHHHHHHHHhHHHHHHHHHH---------HHHHHHHHHHHHHH
Confidence 334444445544444443 1134555555555555555444 56666666666655
No 58
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=20.82 E-value=1.1e+02 Score=27.31 Aligned_cols=57 Identities=18% Similarity=0.238 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCceeccC
Q 017913 99 CLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKKFSFKNK 158 (364)
Q Consensus 99 ~l~~i~~~i~~L~k~l~das~~Lp~YD~r~~~~~L~~L~~~l~~~r~~l~PKkKF~Fk~k 158 (364)
.|..++..+-.|...++.....-+ .+...+.++.|.+.+++..+.+-|.+.|-.-.-
T Consensus 54 ~L~~iq~~L~~l~~~la~~~~~~~---~~i~~~~v~~Le~~i~~~~~~~~~~~~Filpgg 110 (163)
T PF01923_consen 54 ILERIQNELFDLGAELATPEEDEE---PEITEEDVQELEEEIDEYSEELPPLKGFILPGG 110 (163)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSSS---CS--HHHHHHHHHHHHHHHHHS-SESSCEES-S
T ss_pred HHHHHHHHHHHHHHHHcCCCcccc---cccCHHHHHHHHHHHHHHHhcCCCCceeEeCCC
Confidence 455555555566655554332111 345567888888889888888777788876553
No 59
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=20.23 E-value=1.1e+02 Score=25.36 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--eeccCC
Q 017913 123 SYEIRASLKTISDLRQNLDTLTAHIVPKKKF--SFKNKP 159 (364)
Q Consensus 123 ~YD~r~~~~~L~~L~~~l~~~r~~l~PKkKF--~Fk~k~ 159 (364)
.|++.-..++|++|.+..+..-..|.|+..| +|.+|-
T Consensus 29 ~~s~~pi~eqi~kLe~~addl~nsLdP~~~~l~S~PgRE 67 (97)
T PF05440_consen 29 VVSMDPINEQIDKLEKAADDLVNSLDPRTPPLNSFPGRE 67 (97)
T ss_pred EEechHHHHHHHHHHHHHHHHHhccCCCCCccccCCCCc
Confidence 4666677788888888888888889898887 666664
No 60
>PF14282 FlxA: FlxA-like protein
Probab=20.13 E-value=3.3e+02 Score=22.55 Aligned_cols=20 Identities=20% Similarity=0.322 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHhhc
Q 017913 99 CLTDISSSISDLEKLVAENS 118 (364)
Q Consensus 99 ~l~~i~~~i~~L~k~l~das 118 (364)
.+..|..+|..|+..+.+..
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~ 39 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELS 39 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666666766666543
No 61
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.13 E-value=5.8e+02 Score=22.62 Aligned_cols=34 Identities=9% Similarity=0.214 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhc-CChhhHHHHHHHHHHHHHHH
Q 017913 81 NDFKNSITTQIESA-ADPSCLTDISSSISDLEKLV 114 (364)
Q Consensus 81 ~~~~~~ie~~L~~~-~~~~~l~~i~~~i~~L~k~l 114 (364)
..++.+|+.++... .+++.+.++..+|.+|+..|
T Consensus 71 ~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 71 VSKRYEYNALLTANPPDSSKINAVAKEMENLRQSL 105 (143)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34444555555433 44556777777777777654
Done!