Query 017913
Match_columns 364
No_of_seqs 233 out of 409
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:56:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yuh_A Tubulin-specific chaper 100.0 6.9E-54 2.4E-58 387.3 13.9 165 189-353 8-173 (179)
2 3bh7_B Protein XRP2; protein-p 100.0 1.6E-51 5.5E-56 405.4 19.0 176 149-352 25-200 (352)
3 2l3l_A Tubulin-specific chaper 99.9 1.2E-25 3.9E-30 187.9 8.0 104 48-151 1-111 (111)
4 3bh7_B Protein XRP2; protein-p 98.4 8.8E-07 3E-11 87.2 10.4 97 211-308 39-140 (352)
5 2yuh_A Tubulin-specific chaper 98.4 8.4E-07 2.9E-11 79.5 9.1 95 191-290 32-127 (179)
6 2b0r_A Possible adenyl cyclase 97.9 3.5E-05 1.2E-09 69.7 8.4 109 189-298 49-164 (202)
7 1k8f_A CAP, adenylyl cyclase-a 97.8 6.2E-05 2.1E-09 65.8 8.1 108 190-298 9-122 (157)
8 1k4z_A CAP, adenylyl cyclase-a 97.7 5.1E-05 1.7E-09 66.6 6.2 107 190-298 10-123 (159)
9 1k8f_A CAP, adenylyl cyclase-a 93.4 0.26 8.9E-06 42.9 8.0 70 229-298 29-101 (157)
10 2b0r_A Possible adenyl cyclase 91.2 0.45 1.5E-05 43.0 6.9 90 191-283 74-165 (202)
11 1k4z_A CAP, adenylyl cyclase-a 89.7 0.63 2.2E-05 40.6 6.3 91 191-284 33-125 (159)
12 2lw1_A ABC transporter ATP-bin 63.0 28 0.00095 26.8 7.4 46 99-144 30-76 (89)
13 1gs9_A Apolipoprotein E, APOE4 57.9 17 0.00058 31.5 5.8 54 72-125 29-86 (165)
14 3tul_A Cell invasion protein S 43.2 1.1E+02 0.0038 26.1 8.3 72 73-146 47-122 (158)
15 2a3d_A Protein (de novo three- 38.3 78 0.0027 22.8 5.6 39 77-115 4-43 (73)
16 3kdq_A Uncharacterized conserv 30.7 2.5E+02 0.0085 23.8 10.0 103 44-146 12-143 (154)
17 2xus_A Breast cancer metastasi 30.4 1.3E+02 0.0045 20.9 5.6 37 102-145 10-46 (49)
18 2v71_A Nuclear distribution pr 30.4 1.5E+02 0.0052 26.2 7.5 68 74-146 30-103 (189)
19 2qyw_A Vesicle transport throu 29.1 2.1E+02 0.0071 22.4 9.9 74 74-147 18-101 (102)
20 1vcs_A Vesicle transport throu 28.6 2.1E+02 0.0072 22.3 9.2 72 74-145 8-95 (102)
21 2c5k_T Syntaxin TLG1, T-snare 27.7 2E+02 0.0069 22.3 7.1 48 99-147 44-91 (95)
22 3osx_A 60 kDa chaperonin; alph 23.7 98 0.0034 27.7 5.0 37 99-138 160-196 (201)
23 4fi5_A Nucleoprotein; structur 23.5 87 0.003 25.5 4.2 17 129-145 74-90 (113)
24 4emc_A Monopolin complex subun 22.4 1.4E+02 0.0047 26.5 5.6 54 80-147 4-57 (190)
25 3m6c_A 60 kDa chaperonin 1; ch 21.9 1.1E+02 0.0038 27.2 5.0 37 99-138 153-189 (194)
26 2k48_A Nucleoprotein; viral pr 20.8 1E+02 0.0036 24.7 4.1 14 79-92 39-52 (107)
27 2ve7_C Kinetochore protein NUF 20.3 80 0.0027 29.0 3.9 44 101-156 151-194 (250)
28 1ez3_A Syntaxin-1A; three heli 20.3 3.1E+02 0.011 21.4 9.2 35 74-114 4-38 (127)
No 1
>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding, beta-roll, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=6.9e-54 Score=387.26 Aligned_cols=165 Identities=40% Similarity=0.754 Sum_probs=160.5
Q ss_pred CCCCceecccCcEEEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEeee
Q 017913 189 RDSPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQ 268 (364)
Q Consensus 189 ~~~~~i~n~~~~~i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac~Q 268 (364)
...++|+|++|++|+++.++..+.++.|+||++|+|+|.+++++|+|++|++|+|++|||.|||||++|+||+|+++|+|
T Consensus 8 ~~~~~i~~~~~~~iv~~~~~~~~~~v~I~~c~~c~I~i~g~~~sl~i~~c~~c~Iv~g~V~gsv~i~~C~~~~i~v~c~Q 87 (179)
T 2yuh_A 8 SWVCGFSNLESQVLEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQ 87 (179)
T ss_dssp CCEEECCSCBSCEEEECHHHHSSCEEEECSCBSCEEEECSCCSCEEEESCBSCEEECCCCSSCEEEESCBSCEEECCCSE
T ss_pred CCeEEEEeeECCEEEECCccccCCeEEEecCcCCEEEEcCCccEEEEecCCCCEEEECCcccEEEEEeCCceEEEEEcCE
Confidence 35678999999999999887778999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcceeeeEEEEEccCCCeEeCCCcceeecCCCCccchHHHHHHcCCCCCCCCCCccccCCCC-CCCCCCCceecCCCc
Q 017913 269 IRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIEADLEVAGLNEETGNWTNVDDFKWL-RAVQSPNWSVLPEEE 347 (364)
Q Consensus 269 lRiH~~~~~~~yl~~~S~PIIEdC~~I~Fapy~~~Y~~le~~l~~agl~~~~n~w~~V~DF~wl-k~~~SPNWsil~e~e 347 (364)
||+|+|++|+|||+++++||||+|++|+||||++.|++|++||+++||++..|+|++|+||+|| ++.+||||++|||+|
T Consensus 88 lri~~~~~~~~yL~~~s~PIIE~c~~i~fapy~~~Y~~l~~~l~~agl~~~~n~W~~v~DF~wl~~~~~spnw~~l~~~~ 167 (179)
T 2yuh_A 88 LRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGLDRSKNNWNDVDDFNWLARDMASPNWSILPEEE 167 (179)
T ss_dssp EEEESCBSCEEECCCSSEEEEESCBSEEEECCCCCCTTSHHHHHHHTCCSSCCCCSCEECCCCSSCSSCCTTEECCCSSS
T ss_pred EEEeccCCeEEEEeCCCCcEEEcCCCceEecCccCCHhHHHHHHHcCCCcccCCcCCceeCCCcccCCCCCCcEECCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 789999999999999
Q ss_pred cCCccc
Q 017913 348 RIGTVD 353 (364)
Q Consensus 348 r~~~~~ 353 (364)
|+++|+
T Consensus 168 ~~~~w~ 173 (179)
T 2yuh_A 168 RNIQWD 173 (179)
T ss_dssp CSCCCC
T ss_pred ccCccc
Confidence 999998
No 2
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=100.00 E-value=1.6e-51 Score=405.43 Aligned_cols=176 Identities=22% Similarity=0.472 Sum_probs=155.5
Q ss_pred CCCCceeccCCCCcccccccCCccccCCCCcccccCCCCCCCCCceecccCcEEEecCCCCcccceEEcccCccEEEeeC
Q 017913 149 PKKKFSFKNKPVKKETHIINQDTECNTVSLPELKKTSLPVRDSPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVG 228 (364)
Q Consensus 149 PKkKF~Fk~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~~~~~i~~~~~~~~~~~~~l~nl~~C~V~l~~ 228 (364)
.||||+|++|++.. ...++|+|.+|++|++.++++.+.++.|+||++|+|||++
T Consensus 25 ~~k~~s~~~~~k~~--------------------------~~~~~i~~~~~~ti~~~~~~i~g~~v~I~nc~~c~I~l~~ 78 (352)
T 3bh7_B 25 RPKQYSWDQREKVD--------------------------PKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFD 78 (352)
T ss_dssp ----------------------------------------CCSSEEESCBSCEEEECTTSSTTCCEEEESCBSCEEEECS
T ss_pred cCccccccccCCCC--------------------------CCceEEECccCCEEEECCCcccCCcEEEecCcCCEEEEec
Confidence 46889999986421 1247899999999999999999999999999999999999
Q ss_pred ccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEeeeEEEcceeeeEEEEEccCCCeEeCCCcceeecCCCCccchH
Q 017913 229 SVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSHQIRIHFAKRSDFYLRARSRPIIEDSNEVRFAPYCLKYKGIE 308 (364)
Q Consensus 229 ~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac~QlRiH~~~~~~~yl~~~S~PIIEdC~~I~Fapy~~~Y~~le 308 (364)
++++|+|++|+||+|++|||.|||||++|+||+|+++|||||+|+|+||+|||+++|+||||||++|+|||||+.|++++
T Consensus 79 ~~~sl~I~~c~nC~Iv~GpV~gsv~I~~C~n~~i~vac~QlRih~c~n~~~yL~~~s~PIIEdc~~I~FaPyn~~Yp~l~ 158 (352)
T 3bh7_B 79 HSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELA 158 (352)
T ss_dssp CBSCEEEESCBSCEEEEEEEEEEEEEESCEEEEEEEEEEEEEEESCEEEEEEEEESSCCEEESCEEEEEEECCCBCTTHH
T ss_pred CCceEEEecCCCCEEEEccccceEEEEcCCCcEEEEEcceEEEecccCcEEEEEcCCCcEEEcCCCceEEccccCCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCCCccccCCCCCCCCCCCceecCCCccCCcc
Q 017913 309 ADLEVAGLNEETGNWTNVDDFKWLRAVQSPNWSVLPEEERIGTV 352 (364)
Q Consensus 309 ~~l~~agl~~~~n~w~~V~DF~wlk~~~SPNWsil~e~er~~~~ 352 (364)
+||+.+||++..|+|++|+||+|++ +||||++||++++..+|
T Consensus 159 ~~l~~agL~~~~N~W~~V~DF~~~~--~spnw~ll~~~~~~~~~ 200 (352)
T 3bh7_B 159 FQFKDAGLSIFNNTWSNIHDFTPVS--GELNWSLLPEDAVVQDY 200 (352)
T ss_dssp HHHHHTTCCTTCCCCSCCEESSCBT--TBCSEEECCTTCCGGGT
T ss_pred HHHHhcCCCccCCCCCCceeCCCCC--CCCCCEECChhhhhccc
Confidence 9999999999999999999999984 89999999999977553
No 3
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=99.92 E-value=1.2e-25 Score=187.86 Aligned_cols=104 Identities=23% Similarity=0.396 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhhhc---CCC----CCCCCchHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhccC
Q 017913 48 MIHRLAVRHQTRLETR---KPD----SPDSSSTSAFLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYC 120 (364)
Q Consensus 48 ~~erl~~R~~~r~~~~---~~~----~~~~e~~~~F~~~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l~das~~ 120 (364)
|||||++||++|++++ |++ ++.+|++++|+++|++++++||++|++++-+++|++|.++|++|+++|+|+++|
T Consensus 1 ~~eRL~~R~~~R~~~~~~r~~~~~~~~~~~E~~~~F~~~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~f 80 (111)
T 2l3l_A 1 MPERLQRREQERQLEVERRKQKRQNQEVEKENSHFFVATFARERAAVEELLERAESVERLEEAASRLQGLQKLINDSVFF 80 (111)
T ss_dssp CCCCCCCHHHHHHTTHHHHTTSSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTT
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 6899999999999988 333 333899999999999999999999998876778999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 017913 121 LPSYEIRASLKTISDLRQNLDTLTAHIVPKK 151 (364)
Q Consensus 121 Lp~YD~r~~~~~L~~L~~~l~~~r~~l~PKk 151 (364)
||+||+|+|+++|+.|+..|+++|+++.|||
T Consensus 81 Lp~YD~R~~q~~i~~L~~~l~e~r~~l~PKK 111 (111)
T 2l3l_A 81 LAAYDLRQGQEALARLQAALAERRRGLQPKK 111 (111)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999997
No 4
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=98.41 E-value=8.8e-07 Score=87.17 Aligned_cols=97 Identities=19% Similarity=0.359 Sum_probs=80.9
Q ss_pred ccceEEcccCccEEEee-Cc--cceEEEecccCcEEEEeeccceEEEEecCCcEEEEE--eeeEEEcceeeeEEEEEccC
Q 017913 211 IGEFTLSGLDSCEVKLV-GS--VNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLV--SHQIRIHFAKRSDFYLRARS 285 (364)
Q Consensus 211 ~~~~~l~nl~~C~V~l~-~~--~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivva--c~QlRiH~~~~~~~yl~~~S 285 (364)
...+.++|+++.+|... +. -..+.|.||++|+|++...-.+++|++|.||+|++. ..-+.+++|.||.|++-| .
T Consensus 39 ~~~~~i~~~~~~ti~~~~~~i~g~~v~I~nc~~c~I~l~~~~~sl~I~~c~nC~Iv~GpV~gsv~I~~C~n~~i~vac-~ 117 (352)
T 3bh7_B 39 PKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLAC-Q 117 (352)
T ss_dssp CCSSEEESCBSCEEEECTTSSTTCCEEEESCBSCEEEECSCBSCEEEESCBSCEEEEEEEEEEEEEESCEEEEEEEEE-E
T ss_pred CCceEEECccCCEEEECCCcccCCcEEEecCcCCEEEEecCCceEEEecCCCCEEEEccccceEEEEcCCCcEEEEEc-c
Confidence 35899999999999775 32 258999999999999976678899999999999984 468999999999999965 5
Q ss_pred CCeEeCCCcceeecCCCCccchH
Q 017913 286 RPIIEDSNEVRFAPYCLKYKGIE 308 (364)
Q Consensus 286 ~PIIEdC~~I~Fapy~~~Y~~le 308 (364)
+-.|.+|+++.|.=+...=|-+|
T Consensus 118 QlRih~c~n~~~yL~~~s~PIIE 140 (352)
T 3bh7_B 118 QFRVRDCRKLEVFLCCATQPIIE 140 (352)
T ss_dssp EEEEESCEEEEEEEEESSCCEEE
T ss_pred eEEEecccCcEEEEEcCCCcEEE
Confidence 67789999999997765544443
No 5
>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding, beta-roll, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=8.4e-07 Score=79.50 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=80.6
Q ss_pred CCceecccCcEEEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEee-eE
Q 017913 191 SPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSH-QI 269 (364)
Q Consensus 191 ~~~i~n~~~~~i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac~-Ql 269 (364)
...+.+.++.+|.+... -..++|.+|++|+|.+....++++|.||++|+|++. ...+.|++|.||.|++.|. +-
T Consensus 32 ~v~I~~c~~c~I~i~g~---~~sl~i~~c~~c~Iv~g~V~gsv~i~~C~~~~i~v~--c~Qlri~~~~~~~~yL~~~s~P 106 (179)
T 2yuh_A 32 DVLLTELSNCTVRLYGN---PNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVA--CQQLRIHSTKDTRIFLQVTSRA 106 (179)
T ss_dssp EEEECSCBSCEEEECSC---CSCEEEESCBSCEEECCCCSSCEEEESCBSCEEECC--CSEEEEESCBSCEEECCCSSEE
T ss_pred eEEEecCcCCEEEEcCC---ccEEEEecCCCCEEEECCcccEEEEEeCCceEEEEE--cCEEEEeccCCeEEEEeCCCCc
Confidence 46788999999988642 479999999999999998999999999999999874 5789999999999999775 56
Q ss_pred EEcceeeeEEEEEccCCCeEe
Q 017913 270 RIHFAKRSDFYLRARSRPIIE 290 (364)
Q Consensus 270 RiH~~~~~~~yl~~~S~PIIE 290 (364)
-|.+|++++|.=+-..=|-+|
T Consensus 107 IIE~c~~i~fapy~~~Y~~l~ 127 (179)
T 2yuh_A 107 IVEDCSGIQFAPYTWSYPEID 127 (179)
T ss_dssp EEESCBSEEEECCCCCCTTSH
T ss_pred EEEcCCCceEecCccCCHhHH
Confidence 789999999887765555443
No 6
>2b0r_A Possible adenyl cyclase-associated protein; structural genomics consortium, SGC, unknown function; 2.60A {Cryptosporidium parvum}
Probab=97.88 E-value=3.5e-05 Score=69.73 Aligned_cols=109 Identities=15% Similarity=0.246 Sum_probs=89.7
Q ss_pred CCCCceecccC--cEEEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEE--
Q 017913 189 RDSPGFRDKQS--QVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVL-- 264 (364)
Q Consensus 189 ~~~~~i~n~~~--~~i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivv-- 264 (364)
.+.+.+.|..| ..|++...+. ...+.|.+|.||+|.+.|.+.+|.|++|++|.|++--+=+++-|-+|.++.+-+
T Consensus 49 G~KW~VEn~~~~~~~lvi~~~e~-~qsV~I~~C~nstI~IkGKvNsItld~C~k~~vv~dsvVSsvEvinc~~v~vQV~G 127 (202)
T 2b0r_A 49 KDTYLVENHVNCADPITLSEGSI-KNKVSVRCSQNSRIIVEQKVNSIFIENCVGCIFLVNGVISSIEIVNCDDIKLQMTG 127 (202)
T ss_dssp TTEEEEECCBSCSSCEEECCCCT-TCEEEEEEEESCEEEECSCBSEEEEEEEEEEEEEECCBSSEEEEESCEEEEEEESS
T ss_pred CCEEEEEeccCCCCCceEecccc-CcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEec
Confidence 34578888887 5566654433 469999999999999999999999999999999999999999999999999988
Q ss_pred EeeeEEEcceeeeEEEEEccC--CCeE-eCCCcceee
Q 017913 265 VSHQIRIHFAKRSDFYLRARS--RPII-EDSNEVRFA 298 (364)
Q Consensus 265 ac~QlRiH~~~~~~~yl~~~S--~PII-EdC~~I~Fa 298 (364)
.|..+-|..|.+|.|||.-.| .-|+ --|++|-+.
T Consensus 128 ~vPTIsIDKtDg~qiYLSkeSl~teIvTSKSSemNV~ 164 (202)
T 2b0r_A 128 IVPTISLDKSNKVNIYTSKEGKNVEVYSSKSSEMNLL 164 (202)
T ss_dssp CCCEEEEESCEEEEEECCGGGTTCEEEEESCEEEEEE
T ss_pred ccCEEEEEccCCEEEEEcccccCcEEEEecccceeEe
Confidence 578999999999999997542 3455 456665553
No 7
>1k8f_A CAP, adenylyl cyclase-associated protein; actin bindin structural genomics, PSI, protein structure initiative; 2.80A {Homo sapiens} SCOP: b.80.5.1
Probab=97.77 E-value=6.2e-05 Score=65.84 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=87.1
Q ss_pred CCCceecccCc-EEEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEE--Ee
Q 017913 190 DSPGFRDKQSQ-VLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVL--VS 266 (364)
Q Consensus 190 ~~~~i~n~~~~-~i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivv--ac 266 (364)
+.+.+.|..|. .++....+ -...+.|.+|.||+|.+.|.+.++.|++|++|.|++-.+=+++-+-+|.+..+-+ .|
T Consensus 9 ~KW~VEn~~~~~~~~i~~~~-~~qsV~I~~C~~s~I~IkGKvNsIsld~C~k~~vv~ds~VSsvevinc~~~~vQv~g~v 87 (157)
T 1k8f_A 9 KKWRVENQENVSNLVIEDTE-LKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKV 87 (157)
T ss_dssp TEEEEESCBSCCCEEECCCC-TTCEEEEESCBSCEEEEEEEESEEEEESCEEEEEEEEEESSEEEEESCEEEEEEESSCC
T ss_pred CEEEEEeccCCcccEEEccc-cCcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEeccc
Confidence 34677777763 35544333 2469999999999999999999999999999999999999999999999999988 68
Q ss_pred eeEEEcceeeeEEEEEccC--CCeE-eCCCcceee
Q 017913 267 HQIRIHFAKRSDFYLRARS--RPII-EDSNEVRFA 298 (364)
Q Consensus 267 ~QlRiH~~~~~~~yl~~~S--~PII-EdC~~I~Fa 298 (364)
..+-|..|.++.+||.-.| ..|+ --|++|-..
T Consensus 88 PtisIDktdg~~iYLSkesl~~ei~TsKsS~mNv~ 122 (157)
T 1k8f_A 88 PTISINKTDGCHAYLSKNSLDCEIVSAKSSEMNVL 122 (157)
T ss_dssp SEEEEESCEEEEEECCTTCTTCEEEEESCEEEEEE
T ss_pred CEEEEEccCCEEEEEccccCCcEEEEEcccceEEe
Confidence 8999999999999998543 2344 456665553
No 8
>1k4z_A CAP, adenylyl cyclase-associated protein; right-handed parallel beta-helix, intertwined dimer; 2.30A {Saccharomyces cerevisiae} SCOP: b.80.5.1 PDB: 1kq5_A
Probab=97.69 E-value=5.1e-05 Score=66.58 Aligned_cols=107 Identities=16% Similarity=0.220 Sum_probs=85.3
Q ss_pred CCCceecccCcE--EEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEE--E
Q 017913 190 DSPGFRDKQSQV--LVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVL--V 265 (364)
Q Consensus 190 ~~~~i~n~~~~~--i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivv--a 265 (364)
+.+.+.|..|.. ++... + -...+.|.+|.||+|.+.|.+.++.|++|++|.|++-.+=+++-+-+|.+..+-+ .
T Consensus 10 ~KW~VEn~~~~~~~v~~~~-~-~~qsV~I~~C~~s~I~IkGKvNsItld~C~k~~vv~ds~VSsvevinc~~v~vQv~g~ 87 (159)
T 1k4z_A 10 NKWFIENYENETESLVIDA-N-KDESIFIGKCSQVLVQIKGKVNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHS 87 (159)
T ss_dssp TEEEEECCBSCSSCEEEEC-C-TTCEEEEEEEEEEEEEEESCBSEEEEEEEEEEEEEESCBSSCEEEEEEESEEEEESSC
T ss_pred CEEEEEEeeCCCceEEEcc-c-cCcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEecc
Confidence 346677776642 33322 2 2469999999999999999999999999999999999999999999999999988 5
Q ss_pred eeeEEEcceeeeEEEEEccC--CCeE-eCCCcceee
Q 017913 266 SHQIRIHFAKRSDFYLRARS--RPII-EDSNEVRFA 298 (364)
Q Consensus 266 c~QlRiH~~~~~~~yl~~~S--~PII-EdC~~I~Fa 298 (364)
|..+-|..|.++.+||.-.| .-|+ --|++|-..
T Consensus 88 vPtisIDktdg~~iYLSkesl~~ei~TSksS~mNv~ 123 (159)
T 1k4z_A 88 LPQISIDKSDGGNIYLSKESLNTEIYTSCSTAINVN 123 (159)
T ss_dssp CSEEEEESCEEEEEECCSTTTTCEEEEESCEEEEEE
T ss_pred cCEEEEEccCCEEEEEChhhcCcEEEEEcccceeEE
Confidence 78999999999999996442 2355 345665553
No 9
>1k8f_A CAP, adenylyl cyclase-associated protein; actin bindin structural genomics, PSI, protein structure initiative; 2.80A {Homo sapiens} SCOP: b.80.5.1
Probab=93.42 E-value=0.26 Score=42.93 Aligned_cols=70 Identities=14% Similarity=0.156 Sum_probs=51.6
Q ss_pred ccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEe--eeEEEcceeeeEEEEEccCCCe-EeCCCcceee
Q 017913 229 SVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVS--HQIRIHFAKRSDFYLRARSRPI-IEDSNEVRFA 298 (364)
Q Consensus 229 ~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac--~QlRiH~~~~~~~yl~~~S~PI-IEdC~~I~Fa 298 (364)
.--+++|.+|.||+|.+--=--+|.|++|.+|.+++.. -.+.+-+|.++.+.+.-.-+-| |..|.|+++.
T Consensus 29 ~~qsV~I~~C~~s~I~IkGKvNsIsld~C~k~~vv~ds~VSsvevinc~~~~vQv~g~vPtisIDktdg~~iY 101 (157)
T 1k8f_A 29 LKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAY 101 (157)
T ss_dssp TTCEEEEESCBSCEEEEEEEESEEEEESCEEEEEEEEEESSEEEEESCEEEEEEESSCCSEEEEESCEEEEEE
T ss_pred cCcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEecccCEEEEEccCCEEEE
Confidence 34578888888888776433456888888888888865 5888888888888776543333 5788888876
No 10
>2b0r_A Possible adenyl cyclase-associated protein; structural genomics consortium, SGC, unknown function; 2.60A {Cryptosporidium parvum}
Probab=91.23 E-value=0.45 Score=42.98 Aligned_cols=90 Identities=12% Similarity=0.196 Sum_probs=64.2
Q ss_pred CCceecccCcEEEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEee--e
Q 017913 191 SPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSH--Q 268 (364)
Q Consensus 191 ~~~i~n~~~~~i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac~--Q 268 (364)
...|.+=.|.+|.+... ...++|.+|.+|.|.+...++++-|-||.+..|-+--.-=+|.|+.|..|.|++.-. .
T Consensus 74 sV~I~~C~nstI~IkGK---vNsItld~C~k~~vv~dsvVSsvEvinc~~v~vQV~G~vPTIsIDKtDg~qiYLSkeSl~ 150 (202)
T 2b0r_A 74 KVSVRCSQNSRIIVEQK---VNSIFIENCVGCIFLVNGVISSIEIVNCDDIKLQMTGIVPTISLDKSNKVNIYTSKEGKN 150 (202)
T ss_dssp EEEEEEEESCEEEECSC---BSEEEEEEEEEEEEEECCBSSEEEEESCEEEEEEESSCCCEEEEESCEEEEEECCGGGTT
T ss_pred EEEEEeccceEEEEcCc---EEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEecccCEEEEEccCCEEEEEcccccC
Confidence 34555666777776643 468889999999999988899999999999888774444468999999999988622 3
Q ss_pred EEEcceeeeEEEEEc
Q 017913 269 IRIHFAKRSDFYLRA 283 (364)
Q Consensus 269 lRiH~~~~~~~yl~~ 283 (364)
..+-.++.+.+-+.+
T Consensus 151 teIvTSKSSemNV~v 165 (202)
T 2b0r_A 151 VEVYSSKSSEMNLLF 165 (202)
T ss_dssp CEEEEESCEEEEEEE
T ss_pred cEEEEecccceeEec
Confidence 445555555555444
No 11
>1k4z_A CAP, adenylyl cyclase-associated protein; right-handed parallel beta-helix, intertwined dimer; 2.30A {Saccharomyces cerevisiae} SCOP: b.80.5.1 PDB: 1kq5_A
Probab=89.67 E-value=0.63 Score=40.58 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=66.9
Q ss_pred CCceecccCcEEEecCCCCcccceEEcccCccEEEeeCccceEEEecccCcEEEEeeccceEEEEecCCcEEEEEee--e
Q 017913 191 SPGFRDKQSQVLVKNFKGSEIGEFTLSGLDSCEVKLVGSVNALFINQLKNCKVYVGPVMGSILIEEVENCLLVLVSH--Q 268 (364)
Q Consensus 191 ~~~i~n~~~~~i~~~~~~~~~~~~~l~nl~~C~V~l~~~~~sl~I~~~~nC~I~~gpV~GSv~I~~c~nc~ivvac~--Q 268 (364)
+..|.+=.|.+|..... ...++|.+|++|.|.+..-++++-+-||.+..|-+--.-=+|.|+.|.+|.+++.-. +
T Consensus 33 sV~I~~C~~s~I~IkGK---vNsItld~C~k~~vv~ds~VSsvevinc~~v~vQv~g~vPtisIDktdg~~iYLSkesl~ 109 (159)
T 1k4z_A 33 SIFIGKCSQVLVQIKGK---VNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLPQISIDKSDGGNIYLSKESLN 109 (159)
T ss_dssp EEEEEEEEEEEEEEESC---BSEEEEEEEEEEEEEESCBSSCEEEEEEESEEEEESSCCSEEEEESCEEEEEECCSTTTT
T ss_pred EEEEEeccceEEEEcCc---EEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEecccCEEEEEccCCEEEEEChhhcC
Confidence 34555566677776643 468999999999999999999999999999998774444568999999999998532 4
Q ss_pred EEEcceeeeEEEEEcc
Q 017913 269 IRIHFAKRSDFYLRAR 284 (364)
Q Consensus 269 lRiH~~~~~~~yl~~~ 284 (364)
-.+-.++.+.+-+.+.
T Consensus 110 ~ei~TSksS~mNv~vp 125 (159)
T 1k4z_A 110 TEIYTSCSTAINVNLP 125 (159)
T ss_dssp CEEEEESCEEEEEEES
T ss_pred cEEEEEcccceeEEec
Confidence 4455555555555543
No 12
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=63.03 E-value=28 Score=26.76 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCChHH-HHHHHHHHHHHHHHHHHHH
Q 017913 99 CLTDISSSISDLEKLVAENSYCLPSYE-IRASLKTISDLRQNLDTLT 144 (364)
Q Consensus 99 ~l~~i~~~i~~L~k~l~das~~Lp~YD-~r~~~~~L~~L~~~l~~~r 144 (364)
.++.+.++|..|+..++|...|-..|+ .......+..+...|+++-
T Consensus 30 ~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~ 76 (89)
T 2lw1_A 30 LLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAF 76 (89)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788889999999998877755553 4556667777777776654
No 13
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=57.88 E-value=17 Score=31.46 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=40.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhhc--CC-hhhHHH-HHHHHHHHHHHHHhhccCCChHH
Q 017913 72 STSAFLSRFNDFKNSITTQIESA--AD-PSCLTD-ISSSISDLEKLVAENSYCLPSYE 125 (364)
Q Consensus 72 ~~~~F~~~F~~~~~~ie~~L~~~--~~-~~~l~~-i~~~i~~L~k~l~das~~Lp~YD 125 (364)
-.+.|+.+|.+-.....+.+++. +. .+.|+. +...+..++.++.+....|.||-
T Consensus 29 v~~~~w~Y~~q~~~~a~~~v~ql~~sel~qel~~~l~~~ld~l~~~~~~l~~~L~P~t 86 (165)
T 1gs9_A 29 ALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVA 86 (165)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 46799999999886666666554 11 134444 77888999999999999999994
No 14
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=43.19 E-value=1.1e+02 Score=26.09 Aligned_cols=72 Identities=7% Similarity=0.147 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHH---HHHHHHHhhc-CChhhHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 017913 73 TSAFLSRFNDFK---NSITTQIESA-ADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAH 146 (364)
Q Consensus 73 ~~~F~~~F~~~~---~~ie~~L~~~-~~~~~l~~i~~~i~~L~k~l~das~~Lp~YD~r~~~~~L~~L~~~l~~~r~~ 146 (364)
+..|...|.+-. ...+..++.. +..+.++.+..++..++..|..-..-=|-|-+ ....++.|...+.+.+..
T Consensus 47 S~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak--~~a~~~q~~~d~~~~~~~ 122 (158)
T 3tul_A 47 SKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQ--AEAAVEQAGKEATEAKEA 122 (158)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHH--HHHHHHHHHHHHHHHHHH
Confidence 456777776433 2345455444 22348899999999999999998999999944 444455555555555443
No 15
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=38.32 E-value=78 Score=22.83 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhhcC-ChhhHHHHHHHHHHHHHHHH
Q 017913 77 LSRFNDFKNSITTQIESAA-DPSCLTDISSSISDLEKLVA 115 (364)
Q Consensus 77 ~~~F~~~~~~ie~~L~~~~-~~~~l~~i~~~i~~L~k~l~ 115 (364)
|..|.++.++|..+|...+ +...|.....+|..+..+|.
T Consensus 4 waefkqrlaaiktrlqalggseaelaafekeiaafeselq 43 (73)
T 2a3d_A 4 WAEFKQRLAAIKTRLQALGGSEAELAAFEKEIAAFESELQ 43 (73)
T ss_dssp HHHHHHHHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554432 22234444444444444443
No 16
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=30.67 E-value=2.5e+02 Score=23.83 Aligned_cols=103 Identities=10% Similarity=0.138 Sum_probs=66.7
Q ss_pred hhhhHHHHHHHHHHHHhhhcC-CCCCC-CCchHHHHHHHHHHHHHHHHHHhhc---------CChh-------hHHHHHH
Q 017913 44 KHQSMIHRLAVRHQTRLETRK-PDSPD-SSSTSAFLSRFNDFKNSITTQIESA---------ADPS-------CLTDISS 105 (364)
Q Consensus 44 ~~~~~~erl~~R~~~r~~~~~-~~~~~-~e~~~~F~~~F~~~~~~ie~~L~~~---------~~~~-------~l~~i~~ 105 (364)
-|..+-.|++.-.+.....++ +|... .|..+.-+..+..-...++..+... ++.. .-+.+..
T Consensus 12 lRadl~kri~qL~~ri~~n~~vQEGe~P~edp~~Ll~El~~~~~~L~~Li~~IN~TN~~~~~~~~~tl~eaia~rd~L~~ 91 (154)
T 3kdq_A 12 QRVEAQRRYSELNQLLLDVAKVQEGDQPAENPHEILTELEELTTRINDLVRRINRTNSVTEFSEGMTLADALSVRDALLK 91 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTTEEETTCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEETTEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHHHHH
Confidence 345555566665555555442 22222 4556677778888888888877543 1111 3455566
Q ss_pred HHHHHHHHHHhhc-----------cCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 017913 106 SISDLEKLVAENS-----------YCLPSYEIRASLKTISDLRQNLDTLTAH 146 (364)
Q Consensus 106 ~i~~L~k~l~das-----------~~Lp~YD~r~~~~~L~~L~~~l~~~r~~ 146 (364)
++.-|+.++..++ .+++.||.+.|+...+.|.+.+.++-..
T Consensus 92 ~~~~l~~~~~~a~~~~~rys~sEIk~vs~vdv~~~qk~ad~l~k~~r~Ld~~ 143 (154)
T 3kdq_A 92 KRTLYSDLADQLTSRQDRYSRSEIKYVATMDAREIRKKADLAAKEYRQLDVD 143 (154)
T ss_dssp HHHHHHHHHHHHHCCCCCSSTTSCCEEESSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccchhhhhheeccCHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777776553 5788999999999999999988776443
No 17
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=30.42 E-value=1.3e+02 Score=20.86 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHh
Q 017913 102 DISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTA 145 (364)
Q Consensus 102 ~i~~~i~~L~k~l~das~~Lp~YD~r~~~~~L~~L~~~l~~~r~ 145 (364)
++...+..|.+.++ ..-=+-|++.|..|..+|++.++
T Consensus 10 e~ld~l~~LEkqF~-------~LkEqlY~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 10 ECVSEMLDLEKQFS-------ELKEKLFRERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455666666665 34457899999999999998764
No 18
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=30.42 E-value=1.5e+02 Score=26.16 Aligned_cols=68 Identities=21% Similarity=0.216 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhccCCChH----HH--HHHHHHHHHHHHHHHHHHhc
Q 017913 74 SAFLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYCLPSY----EI--RASLKTISDLRQNLDTLTAH 146 (364)
Q Consensus 74 ~~F~~~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l~das~~Lp~Y----D~--r~~~~~L~~L~~~l~~~r~~ 146 (364)
..=+..|+...+.||..|.. .|+.+..++..|+..++....-+-.| +. .....++..|++.|..++..
T Consensus 30 e~El~EFqesSrELE~ELE~-----eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~ 103 (189)
T 2v71_A 30 RDELVEFQEGSRELEAELEA-----QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAI 103 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577888888888888872 34444444444444443332222121 11 12223466666666665543
No 19
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=29.07 E-value=2.1e+02 Score=22.40 Aligned_cols=74 Identities=12% Similarity=0.167 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-C--C--h--hhHHHHHHHHHHHHHHHHhh---ccCCChHHHHHHHHHHHHHHHHHHHH
Q 017913 74 SAFLSRFNDFKNSITTQIESA-A--D--P--SCLTDISSSISDLEKLVAEN---SYCLPSYEIRASLKTISDLRQNLDTL 143 (364)
Q Consensus 74 ~~F~~~F~~~~~~ie~~L~~~-~--~--~--~~l~~i~~~i~~L~k~l~da---s~~Lp~YD~r~~~~~L~~L~~~l~~~ 143 (364)
+.+-..|..-.++|...|++. . . . ..+.++...+.+...+|.+- ...+|+=....++..|..-+..|+..
T Consensus 18 e~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~l 97 (102)
T 2qyw_A 18 EKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777778887777755 1 1 1 14444444444444444431 23447766777888888888887776
Q ss_pred Hhcc
Q 017913 144 TAHI 147 (364)
Q Consensus 144 r~~l 147 (364)
+.++
T Consensus 98 k~el 101 (102)
T 2qyw_A 98 HREV 101 (102)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 6543
No 20
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=28.62 E-value=2.1e+02 Score=22.33 Aligned_cols=72 Identities=15% Similarity=0.247 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhc----CCh--h-------hHHHHHHHHHHHHHHHHhhc-cCCChH--HHHHHHHHHHHHH
Q 017913 74 SAFLSRFNDFKNSITTQIESA----ADP--S-------CLTDISSSISDLEKLVAENS-YCLPSY--EIRASLKTISDLR 137 (364)
Q Consensus 74 ~~F~~~F~~~~~~ie~~L~~~----~~~--~-------~l~~i~~~i~~L~k~l~das-~~Lp~Y--D~r~~~~~L~~L~ 137 (364)
+.+-..|....++|...|+.. ++. . .|+++..-|..|.-++.... .+=+.| -+|.|...|+.|+
T Consensus 8 e~YE~df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk 87 (102)
T 1vcs_A 8 EGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLE 87 (102)
T ss_dssp CCSHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHH
Confidence 345567777788887777754 221 1 45555555555555555431 111122 3445556666666
Q ss_pred HHHHHHHh
Q 017913 138 QNLDTLTA 145 (364)
Q Consensus 138 ~~l~~~r~ 145 (364)
..+..++.
T Consensus 88 ~elk~~~~ 95 (102)
T 1vcs_A 88 TDFKRSRI 95 (102)
T ss_dssp HHTHHHHT
T ss_pred HHHHHHHh
Confidence 55555443
No 21
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=27.68 E-value=2e+02 Score=22.34 Aligned_cols=48 Identities=19% Similarity=0.345 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHhcc
Q 017913 99 CLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHI 147 (364)
Q Consensus 99 ~l~~i~~~i~~L~k~l~das~~Lp~YD~r~~~~~L~~L~~~l~~~r~~l 147 (364)
.++++...|.+|.+.+.=+... ++.|+..-..-++.|..+|+..+..+
T Consensus 44 ~l~el~e~l~DL~~SI~i~e~~-~~~EI~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 44 ILKDVEETIVDLDRSIIVMKRD-ENEDVSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS-TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777776654444 88888888888899999988887765
No 22
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=23.73 E-value=98 Score=27.71 Aligned_cols=37 Identities=11% Similarity=0.271 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 017913 99 CLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQ 138 (364)
Q Consensus 99 ~l~~i~~~i~~L~k~l~das~~Lp~YD~r~~~~~L~~L~~ 138 (364)
.-+.+.+++..++..+..++ +.||..+.++.|.+|..
T Consensus 160 ~~~~I~~Rv~qIr~qie~t~---S~ydkEKLqERLAKLsG 196 (201)
T 3osx_A 160 EEGAIAARVTQIRQQIEEST---SDYDREKLQERVAKLAG 196 (201)
T ss_dssp CHHHHHHHHHHHHHHHHTCC---CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHcC
Confidence 56889999999999987654 58999999999999864
No 23
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=23.49 E-value=87 Score=25.48 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 017913 129 SLKTISDLRQNLDTLTA 145 (364)
Q Consensus 129 ~~~~L~~L~~~l~~~r~ 145 (364)
++..|..|+..|.+..+
T Consensus 74 lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 74 IQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555544
No 24
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=22.39 E-value=1.4e+02 Score=26.52 Aligned_cols=54 Identities=24% Similarity=0.390 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHhcc
Q 017913 80 FNDFKNSITTQIESAADPSCLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHI 147 (364)
Q Consensus 80 F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l~das~~Lp~YD~r~~~~~L~~L~~~l~~~r~~l 147 (364)
|.+-+..++++|++. ...+..+..+...|...+. .....|+.|+++|+.++++.
T Consensus 4 ~~~YK~~~q~ql~~a--d~LV~~L~~En~~L~~ql~------------~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 4 LTVYKNSVKQQIDSA--DLLVANLVNENFVLSEKLD------------TKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhh
Confidence 445566677777633 1234445555555544443 44455666666666666554
No 25
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=21.94 E-value=1.1e+02 Score=27.17 Aligned_cols=37 Identities=5% Similarity=0.144 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 017913 99 CLTDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQ 138 (364)
Q Consensus 99 ~l~~i~~~i~~L~k~l~das~~Lp~YD~r~~~~~L~~L~~ 138 (364)
.-+.+.++++.++..+..++ +.||..+.++.|.+|..
T Consensus 153 ~~~~I~~Rv~qIr~~ie~t~---s~ydkEKLqERlAkLsG 189 (194)
T 3m6c_A 153 TAEAVANRAKHLRAEIDKSD---SDWDREKLGERLAKLAG 189 (194)
T ss_dssp CHHHHHHHHHHHHHHHHTCC---CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHcC
Confidence 56789999999999987654 58999999999999875
No 26
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=20.82 E-value=1e+02 Score=24.74 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHh
Q 017913 79 RFNDFKNSITTQIE 92 (364)
Q Consensus 79 ~F~~~~~~ie~~L~ 92 (364)
..+++....|.+|.
T Consensus 39 eLQ~Ei~~~E~QL~ 52 (107)
T 2k48_A 39 ELQENITAHEQQLV 52 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444445554444
No 27
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=20.33 E-value=80 Score=28.95 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCceec
Q 017913 101 TDISSSISDLEKLVAENSYCLPSYEIRASLKTISDLRQNLDTLTAHIVPKKKFSFK 156 (364)
Q Consensus 101 ~~i~~~i~~L~k~l~das~~Lp~YD~r~~~~~L~~L~~~l~~~r~~l~PKkKF~Fk 156 (364)
++..+++..|+....+ ...+|++|+..+.+-.+++.|++|...+
T Consensus 151 e~~~~~i~ql~~En~~------------le~~Ie~Lk~e~~e~~te~~p~~k~~~q 194 (250)
T 2ve7_C 151 KSSADKMQQLNAAHQE------------ALMKLERLEKEVDEDTTVTIPSAVYVAQ 194 (250)
T ss_dssp THHHHHHHHHHHHHHH------------HHHSCC-------------CTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 4555555555555332 5666777777777777777777655443
No 28
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=20.25 E-value=3.1e+02 Score=21.39 Aligned_cols=35 Identities=11% Similarity=0.257 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHH
Q 017913 74 SAFLSRFNDFKNSITTQIESAADPSCLTDISSSISDLEKLV 114 (364)
Q Consensus 74 ~~F~~~F~~~~~~ie~~L~~~~~~~~l~~i~~~i~~L~k~l 114 (364)
+.|...|-.++.+|+..|+. |.....+|..+...+
T Consensus 4 ~~~m~~F~~~v~~I~~~i~~------i~~~v~~l~~~~~~~ 38 (127)
T 1ez3_A 4 DRFMDEFFEQVEEIRGFIDK------IAENVEEVKRKHSAI 38 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 35778888888888888873 344445555555543
Done!