BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017914
(364 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IUS|A Chain A, The Structure Of A Functionally Unknown Conserved Protein
From Silicibacter Pomeroyi Dss
pdb|3IUS|B Chain B, The Structure Of A Functionally Unknown Conserved Protein
From Silicibacter Pomeroyi Dss
Length = 286
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/292 (36%), Positives = 156/292 (53%), Gaps = 20/292 (6%)
Query: 62 MLILGMGFVGRIFAEKIKNQGWVVSGTCTNVMKKKELEQSGFDVHLFNANETALMILTTL 121
+L G G+ R+ + + QGW + GT N + + + SG + L+ E +L
Sbjct: 8 LLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQXEAIRASGAEPLLWPGEEP------SL 61
Query: 122 KNYTHLLVSIPPLEGTGDPMLKH-GELLRSTLMNGHLQWLGYLSSTGVYGHSGGAWVDED 180
THLL+S P G GDP+L G+ + + +W+GYLS+T VYG GAWVDE
Sbjct: 62 DGVTHLLISTAPDSG-GDPVLAALGDQIAA--RAAQFRWVGYLSTTAVYGDHDGAWVDET 118
Query: 181 YPANPTTELGRLRLSAEKGWLNLGRDLGISAQVFRLGGIYGPGRSSVDTIIKQLPLSEGQ 240
P PT GR R+ AE+ W + + VFRL GIYGPGR + K +
Sbjct: 119 TPLTPTAARGRWRVXAEQQWQAVPN---LPLHVFRLAGIYGPGRGPFSKLGK----GGIR 171
Query: 241 KMRRARQYTSRIHVDDICQVLSASIDKPSAWNVYNVVDDDPAPREEVFAYAWDLVEKKWP 300
++ + Q SRIHV+DI QVL+AS +P VYNV DD+P P ++V AYA +L P
Sbjct: 172 RIIKPGQVFSRIHVEDIAQVLAASXARPDPGAVYNVCDDEPVPPQDVIAYAAELQGLPLP 231
Query: 301 GLLKHRKPRENTESSNEKGSSRGEKRVSNVRMKKELGVRLWHPSYKSGLQSI 352
+ K + + + KRV N R+K+ELGVRL +P+Y+ GL+++
Sbjct: 232 PAVDFDKADLTPXARSFYSEN---KRVRNDRIKEELGVRLKYPNYRVGLEAL 280
>pdb|3GPI|A Chain A, Structure Of Putative Nad-Dependent EpimeraseDEHYDRATASE
From Methylobacillus Flagellatus
Length = 286
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 131/313 (41%), Gaps = 47/313 (15%)
Query: 58 SPNRMLILGMGFVGRIFAEKIKNQGWVVSGTCTNVMKKKELEQSGFDVHLFNANETALMI 117
S +++LI G G +G A ++ QG V+G + + + +G + +
Sbjct: 2 SLSKILIAGCGDLGLELARRLTAQGHEVTG----LRRSAQPMPAGVQTLIADVTRP---- 53
Query: 118 LTTLKNYTHL----LVSIPPLEGTGDP--MLKHGELLRSTLM---NGHLQWLGYLSSTGV 168
TL + HL LV D L + E LR+TL LQ + ++SSTGV
Sbjct: 54 -DTLASIVHLRPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGV 112
Query: 169 YGHSGGAWVDEDYPANPTTELGRLRLSAEKGWLNLGRDLGISAQVFRLGGIYGPGRSSVD 228
YG W+DED P G+ L AE S+ + R GIYGPGR
Sbjct: 113 YGQEVEEWLDEDTPPIAKDFSGKRMLEAEALL------AAYSSTILRFSGIYGPGRLR-- 164
Query: 229 TIIKQLPLSEGQKMRRARQYTSRIHVDDICQVLSASIDKPSAW---NVYNVVDDDPAPRE 285
+I+Q E R A +T+RIH DD ++ I + S +Y V D+ P P
Sbjct: 165 -MIRQAQTPEQWPARNA--WTNRIHRDDGAAFIAYLIQQRSHAVPERLYIVTDNQPLPVH 221
Query: 286 EVFAYAWDLVEKKWPGLLKHRKPRENTESSNEKGSSRGEKRVSNVRMKKELGVRLWHPSY 345
++ + D +P + +G K++SN R+ G +L +P Y
Sbjct: 222 DLLRWLADRQGIAYP--------------AGATPPVQGNKKLSNARLLAS-GYQLIYPDY 266
Query: 346 KSGLQSIINQMDQ 358
SG +++ M +
Sbjct: 267 VSGYGALLAAMRE 279
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 162 YLSSTGVYGHSGGAWVDEDYPANPTTELGRLRLSAEKGWLNLGRDLGISAQVFRLGGIYG 221
+ S++ VYG + EDYP +P + G +L+ E + + A ++R +
Sbjct: 111 FTSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALIESYCHTFDMQAWIYRFANVI- 169
Query: 222 PGRSSVDTIIKQLPL------SEGQKMRRARQYTSRIHVDDICQVLSASIDKPSAWNVYN 275
GR S +I + E + + Q S I++ D + + N++N
Sbjct: 170 -GRRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVNIFN 228
Query: 276 VVDDD 280
+ +D
Sbjct: 229 IGSED 233
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 163 LSSTGVYGHSGGAWVDEDYPANPTTELGRLRLSAEKGWLNLGRDLGISAQVFRLGGIYGP 222
L +T V AW PA P G RL+ E+ + +D GI ++ R IYGP
Sbjct: 155 LETTNVSLKESDAW-----PAEPQDAYGLERLATEELCKHYNKDFGIECRIGRFHNIYGP 209
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 163 LSSTGVYGHSGGAWVDEDYPANPTTELGRLRLSAEKGWLNLGRDLGISAQVFRLGGIYGP 222
L +T V AW PA P G +L+ E+ + +D GI ++ R IYGP
Sbjct: 155 LETTNVSLKESDAW-----PAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGP 209
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 163 LSSTGVYGHSGGAWVDEDYPANPTTELGRLRLSAEKGWLNLGRDLGISAQVFRLGGIYGP 222
L +T V AW PA P G +L+ E+ + +D GI ++ R IYGP
Sbjct: 155 LETTNVSLKESDAW-----PAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGP 209
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 163 LSSTGVYGHSGGAWVDEDYPANPTTELGRLRLSAEKGWLNLGRDLGISAQVFRLGGIYGP 222
L +T V AW PA P G +L+ E+ + +D GI ++ R IYGP
Sbjct: 155 LETTNVSLKESDAW-----PAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGP 209
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 180 DYPANPTTELGRLRLSAEKGWLNLGRDLGISAQVFRLGGIYGPGRSSVDTIIKQLPLSEG 239
D+P NP + SA + +L G+ FRL + GP S I LSEG
Sbjct: 153 DHPRNPANSSYAISKSANEDYLEYS---GLDFVTFRLANVVGPRNVSGPLPIFFQRLSEG 209
Query: 240 QKMRRARQYTSRIHVDDICQVLSASID 266
+K + + V D+ + ++D
Sbjct: 210 KKCFVTKARRDFVFVKDLARATVRAVD 236
>pdb|3CE6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
Length = 494
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 61 RMLILGMGFVGRIFAEKIKNQGWVVSGTCTNVMKKKELEQSGFDV 105
++LI G G VG+ AE +K QG VS T + + + GFDV
Sbjct: 276 KVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV 320
>pdb|3DHY|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|B Chain B, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|C Chain C, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|D Chain D, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|2ZIZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZJ0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
Length = 495
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 61 RMLILGMGFVGRIFAEKIKNQGWVVSGTCTNVMKKKELEQSGFDV 105
++LI G G VG+ AE +K QG VS T + + + GFDV
Sbjct: 277 KVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV 321
>pdb|3A4Z|A Chain A, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A4Z|B Chain B, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A4Z|C Chain C, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A4Z|D Chain D, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A4Z|E Chain E, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution
pdb|3A50|A Chain A, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A50|B Chain B, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A50|C Chain C, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A50|D Chain D, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A50|E Chain E, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound Vitamin D3
pdb|3A51|A Chain A, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
pdb|3A51|B Chain B, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
pdb|3A51|C Chain C, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
pdb|3A51|D Chain D, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
pdb|3A51|E Chain E, Structure Of Cytochrome P450 Vdh Mutant (Vdh-K1) Obtained
By Directed Evolution With Bound 25-Hydroxyvitamin D3
Length = 411
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 246 RQYTSRIHVDDICQVL---SASIDKPSAWNVYNVVDDDPAPRE-----EVFAYAWDLVEK 297
R+Y +I V IC++L + D SAW+ +VDD PA + ++ Y DL+E+
Sbjct: 139 REYAFQIPVQVICELLGLPAEDRDDFSAWSSV-LVDDSPADDKNAAMGKLHGYLSDLLER 197
Query: 298 K 298
K
Sbjct: 198 K 198
>pdb|3A4G|A Chain A, Structure Of Cytochrome P450 Vdh From Pseudonocardia
Autotrophica (Trigonal Crystal Form)
pdb|3A4H|A Chain A, Structure Of Cytochrome P450 Vdh From Pseudonocardia
Autotrophica (Orthorhombic Crystal Form)
Length = 411
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 246 RQYTSRIHVDDICQVLSASI---DKPSAWNVYNVVDDDPAPRE-----EVFAYAWDLVEK 297
R+Y +I V IC++L D SAW+ +VDD PA + ++ Y DL+E+
Sbjct: 139 REYAFQIPVQVICELLGVPAEDRDDFSAWSSV-LVDDSPADDKNAAMGKLHGYLSDLLER 197
Query: 298 K 298
K
Sbjct: 198 K 198
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 183 ANPTTELGRLRLSAEKGW-------LNLGRDL--GISAQVFR---LGGIYGPGRSSVDTI 230
A PTT +R + E GW +L +D+ +S ++ R G +YGPG+SS I
Sbjct: 551 AAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNI 610
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 183 ANPTTELGRLRLSAEKGW-------LNLGRDL--GISAQVFR---LGGIYGPGRSSVDTI 230
A PTT +R + E GW +L +D+ +S ++ R G +YGPG+SS I
Sbjct: 551 AAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNI 610
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,665,538
Number of Sequences: 62578
Number of extensions: 492554
Number of successful extensions: 1183
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1165
Number of HSP's gapped (non-prelim): 19
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)