BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017914
(364 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0AD12|YEEZ_ECOLI Protein YeeZ OS=Escherichia coli (strain K12) GN=yeeZ PE=1 SV=1
Length = 274
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 122/291 (41%), Gaps = 35/291 (12%)
Query: 61 RMLILGMGFVGRIFAEKIKNQGWVVSGTCTNVMKKKELEQSGFDVHLFNANETAL---MI 117
++ I+G+G++G A + +GW V+G+ T + SG D +L +
Sbjct: 3 KVAIVGLGWLGMPLAMSLSARGWQVTGSKTTQDGVEAARMSGIDSYLLRMEPELVCDSDD 62
Query: 118 LTTLKNYTHLLVSIPPLE-GTGDPMLKHG--ELLRSTLMNGHLQWLGYLSSTGVYGHSGG 174
L L + L++++P G GD EL+ S L + + + + SST VYG + G
Sbjct: 63 LDALMDADALVITLPARRSGPGDEFYLQAVQELVDSALAH-RIPRIIFTSSTSVYGDAQG 121
Query: 175 AWVDEDYPANPTTELGRLRLSAEKGWL-NLGRDLGISAQVFRLGGIYGPGRSSVDTIIKQ 233
V E P NP T GR+ L + WL NL G S + RL G+ GPGR
Sbjct: 122 T-VKETTPRNPVTNSGRV-LEELEDWLHNLP---GTSVDILRLAGLVGPGRHPGR----- 171
Query: 234 LPLSEGQKMRRARQYTSRIHVDDICQVLSASIDKPSAWNVYNVVDDDPA-PREEVFAYAW 292
G+ + +H++D+ ++ + P ++YN+ PA P VF
Sbjct: 172 --FFAGKTAPDGEHGVNLVHLEDVIGAITLLLQAPKGGHIYNIC--APAHPARNVFY--- 224
Query: 293 DLVEKKWPGLLKHRKPRENTESSNEKGSSRGEKRVSNVRMKKELGVRLWHP 343
+ LL P+ + KG K + R+ ELG +P
Sbjct: 225 ----PQMARLLGLEPPQFRNSLDSGKG-----KIIDGSRICNELGFEYQYP 266
>sp|P0AD13|YEEZ_ECO57 Protein YeeZ OS=Escherichia coli O157:H7 GN=yeeZ PE=4 SV=1
Length = 274
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 122/291 (41%), Gaps = 35/291 (12%)
Query: 61 RMLILGMGFVGRIFAEKIKNQGWVVSGTCTNVMKKKELEQSGFDVHLFNANETAL---MI 117
++ I+G+G++G A + +GW V+G+ T + SG D +L +
Sbjct: 3 KVAIVGLGWLGMPLAMSLSARGWQVTGSKTTQDGVEAARMSGIDSYLLRMEPELVCDSDD 62
Query: 118 LTTLKNYTHLLVSIPPLE-GTGDPMLKHG--ELLRSTLMNGHLQWLGYLSSTGVYGHSGG 174
L L + L++++P G GD EL+ S L + + + + SST VYG + G
Sbjct: 63 LDALMDADALVITLPARRSGPGDEFYLQAVQELVDSALAH-RIPRIIFTSSTSVYGDAQG 121
Query: 175 AWVDEDYPANPTTELGRLRLSAEKGWL-NLGRDLGISAQVFRLGGIYGPGRSSVDTIIKQ 233
V E P NP T GR+ L + WL NL G S + RL G+ GPGR
Sbjct: 122 T-VKETTPRNPVTNSGRV-LEELEDWLHNLP---GTSVDILRLAGLVGPGRHPGR----- 171
Query: 234 LPLSEGQKMRRARQYTSRIHVDDICQVLSASIDKPSAWNVYNVVDDDPA-PREEVFAYAW 292
G+ + +H++D+ ++ + P ++YN+ PA P VF
Sbjct: 172 --FFAGKTAPDGEHGVNLVHLEDVIGAITLLLQAPKGGHIYNIC--APAHPARNVFY--- 224
Query: 293 DLVEKKWPGLLKHRKPRENTESSNEKGSSRGEKRVSNVRMKKELGVRLWHP 343
+ LL P+ + KG K + R+ ELG +P
Sbjct: 225 ----PQMARLLGLEPPQFRNSLDSGKG-----KIIDGSRICNELGFEYQYP 266
>sp|Q56623|GALE_VIBCL UDP-glucose 4-epimerase OS=Vibrio cholerae GN=galE PE=3 SV=1
Length = 328
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 14/148 (9%)
Query: 162 YLSSTGVYGHS---GGAWVDEDYPANPTTELGRLRLSAEKGWLNLGRDLGISAQVFRLGG 218
++SS V G G + ED A P + G + AEK + L +D + + R
Sbjct: 120 FISSIKVNGEGTLVGCPFKTEDNHA-PEDDYGLSKSEAEKQLVALAKDSSMEVVIIRPTI 178
Query: 219 IYGPG-----RSSVDTIIKQLPLSEGQKMRRARQYTSRIHVDDICQVLSASIDKPSAWNV 273
+YGPG S + + K +PL G + R S + ++++ ++ ID P A N
Sbjct: 179 VYGPGVKANFASLMRLVSKGIPLPFGSITQNKR---SLVSINNLVDLIVTCIDHPKAANQ 235
Query: 274 YNVVDD--DPAPREEVFAYAWDLVEKKW 299
+V D D + E V A L + W
Sbjct: 236 VFLVSDGHDVSTAEMVRELAIALDKPTW 263
>sp|C0QZ84|HLDD_BRAHW ADP-L-glycero-D-manno-heptose-6-epimerase OS=Brachyspira
hyodysenteriae (strain ATCC 49526 / WA1) GN=hldD PE=3
SV=1
Length = 318
Score = 38.1 bits (87), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 96/239 (40%), Gaps = 26/239 (10%)
Query: 62 MLIL--GMGFVGRIFAEKIKNQGW---VVSGTCTNVMKKKELEQSGFDVHLFNANETALM 116
M+I+ G GF+G + + N G +V N K K L + F ++ + + L
Sbjct: 1 MIIVTGGAGFIGSNIVKGLNNLGIDDILVVDNLKNASKHKNLNRIKFRDYI-DKEDFNLD 59
Query: 117 ILTTLKNYT------HLLVSIPPLEGTGDPMLKHGELLRSTLMNGHLQ---WLGYLSSTG 167
LT+ N H +E G M+K+ +++ L L Y SS
Sbjct: 60 YLTSFVNNNKVEAIFHQGACSDTMETDGKYMMKNNYEYTKNILHICLDKKIRLFYASSAS 119
Query: 168 VYGHSGGAWVDEDYPANPTTELGRLRLSAEKGWLNLGRDLGISAQV--FRLGGIYGP--- 222
VYG+ + +++ P + ++ L ++ +++QV R +YGP
Sbjct: 120 VYGNGENGFEEDEKNEYPLNVYAFSKYHFDRYLNKLFKENKVNSQVVGLRYFNVYGPQEN 179
Query: 223 --GR--SSVDTIIKQLPLSEGQKMRRARQYTSR--IHVDDICQVLSASIDKPSAWNVYN 275
GR S + Q+ E K+ + R IH+DD+ V + + P+ ++N
Sbjct: 180 HKGRMASVAFHLFNQIKAGERMKIFEGSENFLRDFIHIDDVVSVNNFFFENPNKSGIFN 238
>sp|A2Z7B3|GME1_ORYSI GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica
GN=OsI_032456 PE=2 SV=1
Length = 378
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 24/182 (13%)
Query: 61 RMLILGMG-FVGRIFAEKIKNQGWVVSGTCTNVMKKKELEQSGFDVHLFNANETALM--I 117
R+ I G G F+G A ++K++G + ++ K + + + F H F+ + +M
Sbjct: 31 RISITGAGGFIGSHIARRLKSEGHYI--IASDWKKNEHMTEDMF-CHEFHLVDLRVMDNC 87
Query: 118 LTTLKNYTHLLVSIPPLEGTGDPMLKHG-----------ELLRSTLMNGHLQWLGYLSST 166
L + H+ + G G H +L + +NG ++ Y SS
Sbjct: 88 LKVTNSVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARING-VKRFFYASSA 146
Query: 167 GVYGHSGGAWVD------EDYPANPTTELGRLRLSAEKGWLNLGRDLGISAQVFRLGGIY 220
+Y + + +PA P G +L+ E+ + +D GI +V R IY
Sbjct: 147 CIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIY 206
Query: 221 GP 222
GP
Sbjct: 207 GP 208
>sp|A3C4S4|GME1_ORYSJ GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica
GN=GME-1 PE=1 SV=1
Length = 378
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 24/182 (13%)
Query: 61 RMLILGMG-FVGRIFAEKIKNQGWVVSGTCTNVMKKKELEQSGFDVHLFNANETALM--I 117
R+ I G G F+G A ++K++G + ++ K + + + F H F+ + +M
Sbjct: 31 RISITGAGGFIGSHIARRLKSEGHYI--IASDWKKNEHMTEDMF-CHEFHLVDLRVMDNC 87
Query: 118 LTTLKNYTHLLVSIPPLEGTGDPMLKHG-----------ELLRSTLMNGHLQWLGYLSST 166
L H+ + G G H +L + +NG ++ Y SS
Sbjct: 88 LKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFF-YASSA 146
Query: 167 GVYGHSGGAWVD------EDYPANPTTELGRLRLSAEKGWLNLGRDLGISAQVFRLGGIY 220
+Y + + +PA P G +L+ E+ + +D GI +V R IY
Sbjct: 147 CIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIY 206
Query: 221 GP 222
GP
Sbjct: 207 GP 208
>sp|Q9SYM5|RHM1_ARATH Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana
GN=RHM1 PE=1 SV=1
Length = 669
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 7/137 (5%)
Query: 147 LLRSTLMNGHLQWLGYLSSTGVYGHSGGAWVDEDYPAN---PTTELGRLRLSAEKGWLNL 203
LL + + G ++ ++S+ VYG + + ++ A+ PT + AE +
Sbjct: 114 LLEACKVTGQIRRFIHVSTDEVYGETDEDALVGNHEASQLLPTNPYSATKAGAEMLVMAY 173
Query: 204 GRDLGISAQVFRLGGIYGPGRSSVDTIIKQLPLS-EGQKMR---RARQYTSRIHVDDICQ 259
GR G+ R +YGP + I K + L+ GQ + S ++ +D+ +
Sbjct: 174 GRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGQVLPIHGDGSNVRSYLYCEDVAE 233
Query: 260 VLSASIDKPSAWNVYNV 276
+ K +VYN+
Sbjct: 234 AFEVVLHKGEVGHVYNI 250
>sp|Q9LPG6|RHM2_ARATH Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana
GN=RHM2 PE=1 SV=1
Length = 667
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 7/137 (5%)
Query: 147 LLRSTLMNGHLQWLGYLSSTGVYGHSGGAWVDEDYPAN---PTTELGRLRLSAEKGWLNL 203
LL + + G ++ ++S+ VYG + ++ A+ PT + AE +
Sbjct: 116 LLEACKVTGQIRRFIHVSTDEVYGETDEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAY 175
Query: 204 GRDLGISAQVFRLGGIYGPGRSSVDTIIKQLPLSEGQK----MRRARQYTSRIHVDDICQ 259
GR G+ R +YGP + I K + L+ K S ++ +D+ +
Sbjct: 176 GRSYGLPVITTRGNNVYGPNQFPEKMIPKFILLAMSGKPLPIHGDGSNVRSYLYCEDVAE 235
Query: 260 VLSASIDKPSAWNVYNV 276
+ K +VYNV
Sbjct: 236 AFEVVLHKGEIGHVYNV 252
>sp|Q93VR3|GME_ARATH GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1
SV=1
Length = 377
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 163 LSSTGVYGHSGGAWVDEDYPANPTTELGRLRLSAEKGWLNLGRDLGISAQVFRLGGIYGP 222
L +T V AW PA P G +L+ E+ + +D GI ++ R IYGP
Sbjct: 153 LETTNVSLKESDAW-----PAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGP 207
>sp|P77775|YFCH_ECOLI Epimerase family protein YfcH OS=Escherichia coli (strain K12)
GN=yfcH PE=3 SV=1
Length = 297
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 18/135 (13%)
Query: 164 SSTGVYGHSGGAWVDEDYPANPTTELGRLRLSAEKGWLNLGRDLGISAQ-------VFRL 216
S+TG YG G V E+ P P E +L A W ++ AQ + R
Sbjct: 113 SATGYYGDLGEVVVTEEEP--PHNEFTH-KLCAR--W----EEIACRAQSDKTRVCLLRT 163
Query: 217 GGIYGPGRSSVDTIIKQLPLSEGQKMRRARQYTSRIHVDDICQVLSASIDKPSAWNVYNV 276
G + P + ++ L G + RQY + IH+DD+ + +D +N+
Sbjct: 164 GVVLAPDGGILGKMLPPFRLGLGGPIGSGRQYLAWIHIDDMVNGILWLLDN-ELRGPFNM 222
Query: 277 VDDDPAPREEVFAYA 291
V P R E FA+A
Sbjct: 223 VSPYPV-RNEQFAHA 236
>sp|Q2R1V8|GME2_ORYSJ GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica
GN=GME-2 PE=2 SV=2
Length = 371
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 34/187 (18%)
Query: 61 RMLILGMG-FVGRIFAEKIKNQGWVVSGTCTNVMKKKELEQSGFDVHLFNANETALM--I 117
R+ I G G F+ A ++K++G + ++ K + + + F H F+ + +M
Sbjct: 24 RISITGAGGFIASHIARRLKSEGHYI--IASDWKKNEHMTEDMF-CHEFHLVDLRVMDNC 80
Query: 118 LTTLKNYTHLLVSIPPLEGTGDPMLKHG-----------ELLRSTLMNGHLQWLGYLSST 166
L H+ + G G H +L + +NG ++ Y SS
Sbjct: 81 LKVTTGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARING-VKRFFYASSA 139
Query: 167 GVYGH-----------SGGAWVDEDYPANPTTELGRLRLSAEKGWLNLGRDLGISAQVFR 215
+Y AW PA P G +L+ E+ + +D GI +V R
Sbjct: 140 CIYPEFKQLDTVVSLKESDAW-----PAEPQDAYGLEKLATEELCKHYTKDFGIECRVGR 194
Query: 216 LGGIYGP 222
IYGP
Sbjct: 195 FHNIYGP 201
>sp|Q9LH76|RHM3_ARATH Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana
GN=RHM3 PE=1 SV=1
Length = 664
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 7/137 (5%)
Query: 147 LLRSTLMNGHLQWLGYLSSTGVYGHSGGAWVDEDYPAN---PTTELGRLRLSAEKGWLNL 203
LL + + G ++ ++S+ VYG + ++ A+ PT + AE +
Sbjct: 114 LLEACKVTGQIRRFIHVSTDEVYGETDEDASVGNHEASQLLPTNPYSATKAGAEMLVMAY 173
Query: 204 GRDLGISAQVFRLGGIYGPGRSSVDTIIKQLPLSEGQK----MRRARQYTSRIHVDDICQ 259
GR G+ R +YGP + I K + L+ K S ++ +D+ +
Sbjct: 174 GRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMNGKPLPIHGDGSNVRSYLYCEDVAE 233
Query: 260 VLSASIDKPSAWNVYNV 276
+ K +VYN+
Sbjct: 234 AFEVVLHKGEVNHVYNI 250
>sp|Q9JKU6|STRBP_RAT Spermatid perinuclear RNA-binding protein OS=Rattus norvegicus
GN=Strbp PE=1 SV=1
Length = 671
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 22/151 (14%)
Query: 192 LRLSAEKGWLNLGRDLGISAQVFRL-----GGIYGPGRSSVDTIIKQLPLSEGQKMRRAR 246
L L EK R LG + R+ GI PG + ++ P A
Sbjct: 243 LELICEKSIGTCNRPLGXGEALRRVMECLASGILLPGGPGLHDPCERDPTD-------AL 295
Query: 247 QYTSRIHVDDICQVLSASIDKPSAWNVYNVVDDDPAPREEVF-AYAWDLVEKKWPGLLKH 305
Y + +DI ++ + +Y V++ DP P + F Y+W + +K+ G
Sbjct: 296 SYMTTQQKEDITHSAQHALRLSAFGQIYKVLEMDPLPSSKPFQKYSWSVTDKEGAGSSAL 355
Query: 306 RKPRENTESSNEKGSSRGEKRVSNVRMKKEL 336
++P E+ G+ + N RMK+ L
Sbjct: 356 KRPFED---------GLGDDKDPNKRMKRNL 377
>sp|Q54WS6|TGDS_DICDI dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium discoideum GN=tgds
PE=3 SV=1
Length = 434
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 95/251 (37%), Gaps = 41/251 (16%)
Query: 66 GMGFVGRIFA----EKIKNQGWVVSGT---CTNVMKKK-ELEQSGFDVHLFNANETALM- 116
G GF+G A +K KN +V C+N+ L++ F + N ++ L+
Sbjct: 17 GAGFIGSHLAIYLTKKFKNSKIIVLDKLDYCSNINNLGCVLKELNFKFYKGNILDSELLE 76
Query: 117 ---------ILTTLKNYTHLLVSIP-PLEGTGDPMLKHGELLRSTLMNGHLQWLGYLSST 166
I+ L YTH+ S ++ T + +L LL T N L+ Y+S+
Sbjct: 77 NIFEKEKIDIVIHLAAYTHVDNSFKQSIKFTENNILGTHYLLE-TCKNYKLKKFIYVSTD 135
Query: 167 GVYG-----------HSGGAWVDEDYPANPTTELGRLRLSAEKGWLNLGRDLGISAQVFR 215
VYG +S +E NPT + AE + + + + R
Sbjct: 136 EVYGSGLIEDNDDNNNSINQSSNEKSILNPTNPYSASKAGAEHLVQSYYKSFKLPVIITR 195
Query: 216 LGGIYGPGRSSVDTIIKQLPLSEGQKM-------RRARQYTSRIHVDDICQVLSASIDKP 268
IYGP + I K + L K + R Y +++DDI + K
Sbjct: 196 ANNIYGPKQYPEKIIPKFINLLLNNKKCTIHGTGKNTRNY---LYIDDIVSAFDIILRKG 252
Query: 269 SAWNVYNVVDD 279
NVYN+ D
Sbjct: 253 EIGNVYNIGTD 263
>sp|P59451|EFG_BUCBP Elongation factor G OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=fusA PE=3 SV=1
Length = 710
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 30/209 (14%)
Query: 37 IRCSTIRAAVNL-SYSEKSEWQSPNRMLIL-GMGFVGRIFAEKIKNQGWVVSGTCTNVMK 94
+R I AA+ L S + PN +++L M F + + ++ + + + +
Sbjct: 383 VRAGDIAAAIGLKSVTTGDTLCDPNNVVVLEKMDFPDPVISIAVEPKTKIDQEKMSVALN 442
Query: 95 KKELEQSGFDVHL-FNANETALMILTTLKNYTHLLVSIPPLE-------GTGDPMLKHGE 146
+ E F VH +N+T + + L HL + + + G P + + E
Sbjct: 443 RLAKEDPSFKVHTDRESNQTIISGMGEL----HLEIIVDRMRREFGVGANIGQPQVSYRE 498
Query: 147 LLRSTLMNGHLQWLGYLSSTGVYGHSGGAWVDEDYPANPTTELGRLRLSAEKGWLNLGR- 205
++S++ N +++ G YGH V + +P P + G + ++ KG + G
Sbjct: 499 TIQSSVKNVEGKYIKQSGGRGQYGH----VVIDLFPLKPLNQSGYIFINDIKGGIIPGEY 554
Query: 206 ----DLGISAQVFRLGGIYGP--GRSSVD 228
D GI Q+ +YGP G S VD
Sbjct: 555 ISAIDKGIQEQL-----LYGPLAGYSVVD 578
>sp|Q8CPY7|Y553_STAES Epimerase family protein SE_0553 OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=SE_0553 PE=3 SV=1
Length = 299
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 202 NLGRDLGISAQVFRLGGIYGPGRSSVDTIIKQLPLSEGQKMRRARQYTSRIHVDDICQVL 261
N + G + R G I +++ + L G K+ RQ+ S IH+DD+ + +
Sbjct: 149 NKFKQFGTRVVLGRFGLILSDDGGALEMMELPYRLYVGGKLGSGRQWYSWIHIDDLIRGI 208
Query: 262 SASIDKPSAWNVYNVVDDDPAPREEVFAYA 291
+I+ +A +N+ P R+ +F Y
Sbjct: 209 LFTINHDNAEGPFNLTAPIPE-RQNLFGYT 237
>sp|Q5HQV8|Y438_STAEQ Epimerase family protein SERP0438 OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=SERP0438 PE=3 SV=1
Length = 299
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 202 NLGRDLGISAQVFRLGGIYGPGRSSVDTIIKQLPLSEGQKMRRARQYTSRIHVDDICQVL 261
N + G + R G I +++ + L G K+ RQ+ S IH+DD+ + +
Sbjct: 149 NKFKQFGTRVVLGRFGLILSDDGGALEMMELPYRLYVGGKLGSGRQWYSWIHIDDLIRGI 208
Query: 262 SASIDKPSAWNVYNVVDDDPAPREEVFAYA 291
+I+ +A +N+ P R+ +F Y
Sbjct: 209 LFTINHDNAEGPFNLTAPIPE-RQNLFGYT 237
>sp|Q49VZ4|Y1921_STAS1 Epimerase family protein SSP1921 OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=SSP1921 PE=3 SV=1
Length = 298
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 239 GQKMRRARQYTSRIHVDDICQVLSASIDKPSAWNVYN 275
G K+ RQ+ S IH+DD+ + L +I+ SA V+N
Sbjct: 186 GGKLGSGRQWYSWIHIDDLVRALLHTINTESARGVFN 222
>sp|Q99VK8|Y769_STAAM Epimerase family protein SAV0769 OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=SAV0769 PE=3 SV=1
Length = 300
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 207 LGISAQVFRLGGIYGPGRSSVDTIIKQLPLSEGQKMRRARQYTSRIHVDDICQVLSASID 266
LG + R G I ++ T+ G K+ +Q+ S IH++D+ Q + I+
Sbjct: 155 LGTRVVIGRFGMILSNEGGALQTMKLPYKYYIGGKLGSGQQWYSWIHINDLIQAILFLIN 214
Query: 267 KPSAWNVYNVVDDDPAPREEVFAY 290
SA +N+ P R+ +F Y
Sbjct: 215 NESASGPFNLTAPIPE-RQNLFGY 237
>sp|Q7A6Q5|Y724_STAAN Epimerase family protein SA0724 OS=Staphylococcus aureus (strain
N315) GN=SA0724 PE=1 SV=1
Length = 300
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 207 LGISAQVFRLGGIYGPGRSSVDTIIKQLPLSEGQKMRRARQYTSRIHVDDICQVLSASID 266
LG + R G I ++ T+ G K+ +Q+ S IH++D+ Q + I+
Sbjct: 155 LGTRVVIGRFGMILSNEGGALQTMKLPYKYYIGGKLGSGQQWYSWIHINDLIQAILFLIN 214
Query: 267 KPSAWNVYNVVDDDPAPREEVFAY 290
SA +N+ P R+ +F Y
Sbjct: 215 NESASGPFNLTAPIPE-RQNLFGY 237
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,090,690
Number of Sequences: 539616
Number of extensions: 6233682
Number of successful extensions: 14272
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 14265
Number of HSP's gapped (non-prelim): 28
length of query: 364
length of database: 191,569,459
effective HSP length: 119
effective length of query: 245
effective length of database: 127,355,155
effective search space: 31202012975
effective search space used: 31202012975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)