Query 017919
Match_columns 364
No_of_seqs 133 out of 249
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 07:02:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tfi_A Transcriptional elongat 81.9 1.1 3.9E-05 32.4 3.3 37 77-113 9-48 (50)
2 1qyp_A RNA polymerase II; tran 81.1 1 3.5E-05 32.6 2.8 42 73-114 11-55 (57)
3 3h0g_I DNA-directed RNA polyme 75.7 2.1 7.1E-05 35.2 3.4 41 74-114 69-112 (113)
4 2fiy_A Protein FDHE homolog; F 71.1 1.8 6.2E-05 41.4 2.3 35 77-112 222-263 (309)
5 1twf_I B12.6, DNA-directed RNA 65.7 5.8 0.0002 32.9 4.0 42 74-115 69-113 (122)
6 1pqv_S STP-alpha, transcriptio 58.8 6.4 0.00022 37.3 3.5 37 77-113 268-307 (309)
7 3po3_S Transcription elongatio 58.7 4.6 0.00016 35.7 2.3 37 77-113 137-176 (178)
8 1gnf_A Transcription factor GA 57.8 5.2 0.00018 28.8 2.0 42 76-121 3-44 (46)
9 2kae_A GATA-type transcription 54.9 1.4 4.8E-05 34.4 -1.5 50 72-124 3-52 (71)
10 3qt1_I DNA-directed RNA polyme 48.5 3.7 0.00013 35.0 0.0 39 76-114 91-132 (133)
11 3dfx_A Trans-acting T-cell-spe 47.1 12 0.00042 28.5 2.7 46 74-123 4-49 (63)
12 1k82_A Formamidopyrimidine-DNA 45.1 7.4 0.00025 36.1 1.5 29 77-110 240-268 (268)
13 3nw0_A Non-structural maintena 44.8 3.7 0.00013 37.6 -0.6 38 77-115 193-230 (238)
14 1ee8_A MUTM (FPG) protein; bet 43.7 8 0.00028 35.9 1.4 29 77-110 235-263 (266)
15 2xzf_A Formamidopyrimidine-DNA 43.0 8.4 0.00029 35.7 1.4 29 77-110 242-270 (271)
16 3u6p_A Formamidopyrimidine-DNA 42.0 7.8 0.00027 36.1 1.1 29 77-110 245-273 (273)
17 1z2q_A LM5-1; membrane protein 41.1 12 0.00042 28.8 1.9 30 75-113 19-48 (84)
18 4gat_A Nitrogen regulatory pro 41.1 21 0.00071 27.3 3.2 46 74-123 6-51 (66)
19 3cw1_L U1 small nuclear ribonu 38.8 8.6 0.00029 30.5 0.7 17 101-117 2-18 (77)
20 1k3x_A Endonuclease VIII; hydr 37.3 10 0.00036 34.9 1.1 29 77-110 234-262 (262)
21 2zjr_Z 50S ribosomal protein L 34.1 22 0.00075 26.7 2.3 24 76-111 29-52 (60)
22 2vut_I AREA, nitrogen regulato 32.7 12 0.00042 26.4 0.6 40 78-121 2-41 (43)
23 4hc9_A Trans-acting T-cell-spe 32.7 21 0.00072 29.7 2.1 45 75-123 57-101 (115)
24 2gmg_A Hypothetical protein PF 32.3 26 0.0009 29.2 2.7 13 77-89 84-96 (105)
25 1pft_A TFIIB, PFTFIIBN; N-term 32.0 29 0.00099 24.1 2.5 34 75-114 3-36 (50)
26 2k2d_A Ring finger and CHY zin 29.7 19 0.00064 28.2 1.3 14 77-90 55-68 (79)
27 2pk7_A Uncharacterized protein 24.4 34 0.0011 26.2 1.8 30 76-112 7-36 (69)
28 2js4_A UPF0434 protein BB2007; 24.4 43 0.0015 25.7 2.4 35 76-117 7-42 (70)
29 2jny_A Uncharacterized BCR; st 23.3 29 0.00098 26.5 1.2 30 76-112 9-38 (67)
30 3v2d_5 50S ribosomal protein L 21.9 56 0.0019 24.5 2.5 24 76-111 29-52 (60)
31 2akl_A PHNA-like protein PA012 20.6 61 0.0021 28.4 2.9 32 77-116 27-58 (138)
32 1k81_A EIF-2-beta, probable tr 20.4 33 0.0011 23.2 0.9 31 78-112 1-31 (36)
33 2jr6_A UPF0434 protein NMA0874 20.4 37 0.0013 25.9 1.3 30 76-112 7-36 (68)
34 2con_A RUH-035 protein, NIN on 20.2 29 0.00098 27.5 0.7 37 76-127 14-50 (79)
35 2kpi_A Uncharacterized protein 20.0 59 0.002 23.8 2.3 28 76-112 9-38 (56)
No 1
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=81.85 E-value=1.1 Score=32.38 Aligned_cols=37 Identities=22% Similarity=0.675 Sum_probs=28.7
Q ss_pred CcCCCCCCCCCcceeeecCCCCCCCc---ccccccccccc
Q 017919 77 ALKCPRCESTNTKFCYFNNYSLSQPR---HFCKTCRRYWT 113 (364)
Q Consensus 77 ~~~CPRC~S~~Tkfcy~NNy~~~QPR---~fCk~CrRyWT 113 (364)
..+||+|...+..|--.+..+...|- |.|.+|..-|.
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 56899999988777666666655553 89999998885
No 2
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=81.10 E-value=1 Score=32.62 Aligned_cols=42 Identities=19% Similarity=0.629 Sum_probs=28.1
Q ss_pred CCccCcCCCCCCCCCcceeeecCCCCCCC---ccccccccccccc
Q 017919 73 MPEAALKCPRCESTNTKFCYFNNYSLSQP---RHFCKTCRRYWTR 114 (364)
Q Consensus 73 ~pe~~~~CPRC~S~~Tkfcy~NNy~~~QP---R~fCk~CrRyWT~ 114 (364)
.|....+||+|...+..|--.+-.+...| .|.|..|.--|+.
T Consensus 11 ~~~~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 11 LPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp SCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred CCceEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 34446889999985544433343344444 3999999999976
No 3
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=75.67 E-value=2.1 Score=35.17 Aligned_cols=41 Identities=20% Similarity=0.443 Sum_probs=26.8
Q ss_pred CccCcCCCCCCCCCcceeeecCCCCCCCc---cccccccccccc
Q 017919 74 PEAALKCPRCESTNTKFCYFNNYSLSQPR---HFCKTCRRYWTR 114 (364)
Q Consensus 74 pe~~~~CPRC~S~~Tkfcy~NNy~~~QPR---~fCk~CrRyWT~ 114 (364)
|....+||+|...+..|-..+-.+...|- |.|..|.--|++
T Consensus 69 p~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~~ 112 (113)
T 3h0g_I 69 PRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE 112 (113)
T ss_dssp CBCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCCC
T ss_pred CCcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEec
Confidence 44458999999877554333333332222 889999999974
No 4
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=71.14 E-value=1.8 Score=41.43 Aligned_cols=35 Identities=23% Similarity=0.639 Sum_probs=26.1
Q ss_pred CcCCCCCCCCCcceeeecCCC-------CCCCccccccccccc
Q 017919 77 ALKCPRCESTNTKFCYFNNYS-------LSQPRHFCKTCRRYW 112 (364)
Q Consensus 77 ~~~CPRC~S~~Tkfcy~NNy~-------~~QPR~fCk~CrRyW 112 (364)
..+||.|.++ .++-|+.--. ..---+.|+.|+.|+
T Consensus 222 R~~C~~Cg~~-~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~Yl 263 (309)
T 2fiy_A 222 RIKCSHCEES-KHLAYLSLEHDGQPAEKAVLRAETCPSCQGYL 263 (309)
T ss_dssp TTSCSSSCCC-SCCEEECCCC-CCCSTTCSEEEEEETTTTEEE
T ss_pred CcCCcCCCCC-CCeeEEEecCccccCCCcceEEEEcccccchH
Confidence 6799999998 4677775443 222238999999998
No 5
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=65.67 E-value=5.8 Score=32.90 Aligned_cols=42 Identities=21% Similarity=0.552 Sum_probs=29.8
Q ss_pred CccCcCCCCCCCCCcceeeecCCCCCCCc---ccccccccccccC
Q 017919 74 PEAALKCPRCESTNTKFCYFNNYSLSQPR---HFCKTCRRYWTRG 115 (364)
Q Consensus 74 pe~~~~CPRC~S~~Tkfcy~NNy~~~QPR---~fCk~CrRyWT~G 115 (364)
|.....||+|...+.-|-..+-.+...|- |.|..|.--|+..
T Consensus 69 p~t~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~n 113 (122)
T 1twf_I 69 PRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSD 113 (122)
T ss_dssp CCCCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECC
T ss_pred cccCCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccC
Confidence 33457899999877665444444444443 8999999999875
No 6
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=58.84 E-value=6.4 Score=37.34 Aligned_cols=37 Identities=19% Similarity=0.658 Sum_probs=23.4
Q ss_pred CcCCCCCCCCCcceeeecCCCCCCC---cccccccccccc
Q 017919 77 ALKCPRCESTNTKFCYFNNYSLSQP---RHFCKTCRRYWT 113 (364)
Q Consensus 77 ~~~CPRC~S~~Tkfcy~NNy~~~QP---R~fCk~CrRyWT 113 (364)
...||+|...+..|-=.+..+...| -|.|..|..-|.
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 4689999966544422222333333 289999999885
No 7
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=58.66 E-value=4.6 Score=35.71 Aligned_cols=37 Identities=19% Similarity=0.646 Sum_probs=23.3
Q ss_pred CcCCCCCCCCCcceeeecCCCCCCC---cccccccccccc
Q 017919 77 ALKCPRCESTNTKFCYFNNYSLSQP---RHFCKTCRRYWT 113 (364)
Q Consensus 77 ~~~CPRC~S~~Tkfcy~NNy~~~QP---R~fCk~CrRyWT 113 (364)
..+||+|...+..|--.+-.+..-| -|.|..|..-|.
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 4689999976654322222222222 388999999995
No 8
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=57.78 E-value=5.2 Score=28.78 Aligned_cols=42 Identities=24% Similarity=0.519 Sum_probs=30.8
Q ss_pred cCcCCCCCCCCCcceeeecCCCCCCCcccccccccccccCcccccc
Q 017919 76 AALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNV 121 (364)
Q Consensus 76 ~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyWT~GG~lRnV 121 (364)
+...|-.|..++|-. +-.-. ....+|-+|.-||-..|..|-|
T Consensus 3 ~~~~C~~C~tt~Tp~--WR~gp--~G~~LCNaCGl~~k~~~~~RP~ 44 (46)
T 1gnf_A 3 EARECVNCGATATPL--WRRDR--TGHYLCNACGLYHKMNGQNRPL 44 (46)
T ss_dssp CSCCCTTTCCCCCSS--CBCCT--TCCCBCSHHHHHHHHTCSCCCC
T ss_pred CCCCCCCcCCCCCCc--CccCC--CCCccchHHHHHHHHcCCCCCC
Confidence 467899999998763 22221 2238999999999999998744
No 9
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=54.92 E-value=1.4 Score=34.42 Aligned_cols=50 Identities=22% Similarity=0.378 Sum_probs=33.9
Q ss_pred CCCccCcCCCCCCCCCcceeeecCCCCCCCcccccccccccccCccccccccC
Q 017919 72 PMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVG 124 (364)
Q Consensus 72 p~pe~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyWT~GG~lRnVPvG 124 (364)
+.++....|-.|..++|-. +-.-..... .+|-+|.-||-..++.|-+..=
T Consensus 3 ~~~~~~~~C~nC~tt~Tp~--WRrg~~~~g-~LCNACGl~~~~~~~~RP~~~~ 52 (71)
T 2kae_A 3 HMNKKSFQCSNCSVTETIR--WRNIRSKEG-IQCNACFIYQRKYNKTRPVTAV 52 (71)
T ss_dssp -----CCCCSSSCCSCCSS--CCCCSSSSC-CCSSHHHHHHHHHHSCCCTHHH
T ss_pred CCCCCCCcCCccCCCCCCc--cccCCCCCC-ccchHHHHHHHHhCCCCCcccc
Confidence 3457789999999999863 333111222 8999999999999998877653
No 10
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=48.45 E-value=3.7 Score=35.02 Aligned_cols=39 Identities=26% Similarity=0.634 Sum_probs=0.0
Q ss_pred cCcCCCCCCCCCcceeeecCCCCCCC---ccccccccccccc
Q 017919 76 AALKCPRCESTNTKFCYFNNYSLSQP---RHFCKTCRRYWTR 114 (364)
Q Consensus 76 ~~~~CPRC~S~~Tkfcy~NNy~~~QP---R~fCk~CrRyWT~ 114 (364)
...+||+|...+..|-..+-.+...| -|.|..|.--|.+
T Consensus 91 t~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~e 132 (133)
T 3qt1_I 91 SDRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWKE 132 (133)
T ss_dssp ------------------------------------------
T ss_pred ccCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeCc
Confidence 35789999987765433333333222 3889999999975
No 11
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=47.06 E-value=12 Score=28.49 Aligned_cols=46 Identities=20% Similarity=0.514 Sum_probs=33.6
Q ss_pred CccCcCCCCCCCCCcceeeecCCCCCCCcccccccccccccCcccccccc
Q 017919 74 PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPV 123 (364)
Q Consensus 74 pe~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyWT~GG~lRnVPv 123 (364)
++....|-.|..++|-. .-.-. ....+|-+|.-||-..|+.|-+.+
T Consensus 4 ~~~~~~C~~C~tt~Tp~--WR~gp--~G~~LCNACGl~~~~~~~~RP~~~ 49 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTL--WRRNA--NGDPVCNACGLYYKLHNINRPLTM 49 (63)
T ss_dssp CCTTCCCTTTCCSCCSS--CCCCT--TSCCCCHHHHHHHHHHSSCCCGGG
T ss_pred CCCCCcCCCcCCCCCCc--cCCCC--CCCchhhHHHHHHHHcCCCCCcCc
Confidence 34567899999998853 22211 223899999999999999877665
No 12
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=45.07 E-value=7.4 Score=36.07 Aligned_cols=29 Identities=14% Similarity=0.506 Sum_probs=21.4
Q ss_pred CcCCCCCCCCCcceeeecCCCCCCCccccccccc
Q 017919 77 ALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRR 110 (364)
Q Consensus 77 ~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrR 110 (364)
..+||||...=.|.-+ . .+.-|||..|++
T Consensus 240 g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 268 (268)
T 1k82_A 240 GEPCRVCGTPIVATKH-A----QRATFYCRQCQK 268 (268)
T ss_dssp TSBCTTTCCBCEEEEE-T----TEEEEECTTTCC
T ss_pred CCCCCCCCCEeeEEEE-C----CCceEECCCCCC
Confidence 4679999988776543 2 355599999985
No 13
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=44.83 E-value=3.7 Score=37.60 Aligned_cols=38 Identities=21% Similarity=0.496 Sum_probs=29.5
Q ss_pred CcCCCCCCCCCcceeeecCCCCCCCcccccccccccccC
Q 017919 77 ALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRG 115 (364)
Q Consensus 77 ~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyWT~G 115 (364)
..+|+.|...=+..|+.+= -.++...-|..|+..|+..
T Consensus 193 g~~C~~C~~~~H~~C~~~~-~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 193 GQSCETCGIRMHLPCVAKY-FQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CEECSSSCCEECHHHHHHH-TTTCSSCBCTTTCCBCCSC
T ss_pred CcccCccChHHHHHHHHHH-HHhCCCCCCCCCCCCCCCC
Confidence 5678888888888887553 3456678999999999865
No 14
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=43.66 E-value=8 Score=35.86 Aligned_cols=29 Identities=31% Similarity=0.773 Sum_probs=21.5
Q ss_pred CcCCCCCCCCCcceeeecCCCCCCCccccccccc
Q 017919 77 ALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRR 110 (364)
Q Consensus 77 ~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrR 110 (364)
..+||||...=.|.-+ . .+.-|||..|++
T Consensus 235 g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 235 GLPCPACGRPVERRVV-A----GRGTHFCPTCQG 263 (266)
T ss_dssp TSBCTTTCCBCEEEES-S----SCEEEECTTTTT
T ss_pred CCCCCCCCCEeeEEEE-C----CCceEECCCCCC
Confidence 4679999987666533 2 355599999996
No 15
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=42.96 E-value=8.4 Score=35.72 Aligned_cols=29 Identities=31% Similarity=0.746 Sum_probs=21.7
Q ss_pred CcCCCCCCCCCcceeeecCCCCCCCccccccccc
Q 017919 77 ALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRR 110 (364)
Q Consensus 77 ~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrR 110 (364)
..+||||...=.|.-+ . .+.-|||..|++
T Consensus 242 G~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 242 GEKCSRCGAEIQKIKV-A----GRGTHFCPVCQQ 270 (271)
T ss_dssp TSBCTTTCCBCEEEEE-T----TEEEEECTTTSC
T ss_pred CCCCCCCCCEeeEEEE-C----CCceEECCCCCC
Confidence 5789999988766543 2 355599999996
No 16
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=42.00 E-value=7.8 Score=36.08 Aligned_cols=29 Identities=28% Similarity=0.702 Sum_probs=21.2
Q ss_pred CcCCCCCCCCCcceeeecCCCCCCCccccccccc
Q 017919 77 ALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRR 110 (364)
Q Consensus 77 ~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrR 110 (364)
..+||||...=.|.-+ . .+.-|||..|++
T Consensus 245 g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 273 (273)
T 3u6p_A 245 GNPCKRCGTPIEKTVV-A----GRGTHYCPRCQR 273 (273)
T ss_dssp TSBCTTTCCBCEEEEE-T----TEEEEECTTTCC
T ss_pred cCCCCCCCCeEEEEEE-C----CCCeEECCCCCC
Confidence 4689999987766533 2 255599999985
No 17
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=41.13 E-value=12 Score=28.82 Aligned_cols=30 Identities=30% Similarity=0.682 Sum_probs=20.8
Q ss_pred ccCcCCCCCCCCCcceeeecCCCCCCCcccccccccccc
Q 017919 75 EAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWT 113 (364)
Q Consensus 75 e~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyWT 113 (364)
++...|..|... | ++..-||-|+.|.+-.=
T Consensus 19 ~~~~~C~~C~~~---F------s~~~RrHHCR~CG~v~C 48 (84)
T 1z2q_A 19 EDAPACNGCGCV---F------TTTVRRHHCRNCGYVLC 48 (84)
T ss_dssp TTCCBCTTTCCB---C------CTTSCCEECTTTCCEEC
T ss_pred CCCCCCcCcCCc---c------ccchhcccccCCCcEEC
Confidence 457788888765 3 34477899998876543
No 18
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=41.12 E-value=21 Score=27.35 Aligned_cols=46 Identities=17% Similarity=0.491 Sum_probs=33.1
Q ss_pred CccCcCCCCCCCCCcceeeecCCCCCCCcccccccccccccCcccccccc
Q 017919 74 PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPV 123 (364)
Q Consensus 74 pe~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyWT~GG~lRnVPv 123 (364)
+.....|-.|.+++|-. +=..- .- ..+|-+|.-||-.-|++|-+..
T Consensus 6 ~~~~~~C~~C~t~~Tp~-WR~gp--~G-~~LCNaCGl~~~~~~~~RP~~~ 51 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPL-WRRNP--EG-QPLCNACGLFLKLHGVVRPLSL 51 (66)
T ss_dssp SSSSCCCTTTCCCCCSS-CEEET--TT-EEECHHHHHHHHHHCSCCCGGG
T ss_pred CCCCCCCCCCCCCCCCc-CCcCC--CC-CCccHHHHHHHHHcCCCCchhh
Confidence 34588999999998862 11111 12 2899999999999998776654
No 19
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=38.75 E-value=8.6 Score=30.49 Aligned_cols=17 Identities=29% Similarity=0.929 Sum_probs=14.9
Q ss_pred CcccccccccccccCcc
Q 017919 101 PRHFCKTCRRYWTRGGA 117 (364)
Q Consensus 101 PR~fCk~CrRyWT~GG~ 117 (364)
|||||+-|..|.|+.-.
T Consensus 2 PkYyCdYCd~~lt~Ds~ 18 (77)
T 3cw1_L 2 PKFYCDYCDTYLTHDSP 18 (77)
T ss_pred CCcccccCCceecCCCH
Confidence 89999999999987744
No 20
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=37.31 E-value=10 Score=34.90 Aligned_cols=29 Identities=31% Similarity=0.650 Sum_probs=20.7
Q ss_pred CcCCCCCCCCCcceeeecCCCCCCCccccccccc
Q 017919 77 ALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRR 110 (364)
Q Consensus 77 ~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrR 110 (364)
..+||||...=.|.-+ . .+.-|||..|++
T Consensus 234 g~pC~~CG~~I~~~~~-~----gR~t~~CP~CQ~ 262 (262)
T 1k3x_A 234 GEPCERCGSIIEKTTL-S----SRPFYWCPGCQH 262 (262)
T ss_dssp TSBCTTTCCBCEEEEE-T----TEEEEECTTTCC
T ss_pred cCCCCCCCCEeEEEEE-C----CCCeEECCCCCC
Confidence 4579999987666432 2 345599999985
No 21
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=34.06 E-value=22 Score=26.66 Aligned_cols=24 Identities=33% Similarity=0.956 Sum_probs=20.2
Q ss_pred cCcCCCCCCCCCcceeeecCCCCCCCcccccccccc
Q 017919 76 AALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRY 111 (364)
Q Consensus 76 ~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRy 111 (364)
....||.|... | .|.+.|.+|.-|
T Consensus 29 ~l~~c~~cG~~--~----------~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 29 NLTECPQCHGK--K----------LSHHICPNCGYY 52 (60)
T ss_dssp CCEECTTTCCE--E----------CTTBCCTTTCBS
T ss_pred CceECCCCCCE--e----------CCceEcCCCCcC
Confidence 47789999875 4 799999999966
No 22
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=32.70 E-value=12 Score=26.42 Aligned_cols=40 Identities=18% Similarity=0.551 Sum_probs=29.1
Q ss_pred cCCCCCCCCCcceeeecCCCCCCCcccccccccccccCcccccc
Q 017919 78 LKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNV 121 (364)
Q Consensus 78 ~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyWT~GG~lRnV 121 (364)
..|-.|..++|-. +-.- .....+|-+|.-||-..|++|-+
T Consensus 2 ~~C~~C~tt~Tp~--WR~g--p~G~~LCNaCGl~~k~~~~~RP~ 41 (43)
T 2vut_I 2 TTCTNCFTQTTPL--WRRN--PEGQPLCNACGLFLKLHGVVRPL 41 (43)
T ss_dssp CCCSSSCCCCCSC--CEEC--TTSCEECHHHHHHHHHHSSCCCC
T ss_pred CcCCccCCCCCCc--cccC--CCCCcccHHHHHHHHHhCCCCCC
Confidence 5688999888753 2211 12238999999999999998865
No 23
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=32.66 E-value=21 Score=29.67 Aligned_cols=45 Identities=20% Similarity=0.520 Sum_probs=33.8
Q ss_pred ccCcCCCCCCCCCcceeeecCCCCCCCcccccccccccccCcccccccc
Q 017919 75 EAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPV 123 (364)
Q Consensus 75 e~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyWT~GG~lRnVPv 123 (364)
.....|-.|...+|-. .-. -..-+.+|-+|.-||..-|..|-+.+
T Consensus 57 ~~~~~C~~C~t~~tp~--WRr--~~~g~~lCNaCgl~~~~~~~~rp~~~ 101 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTL--WRR--NANGDPVCNACGLYYKLHNINRPLTM 101 (115)
T ss_dssp CTTCCCTTTCCSCCSS--CEE--CTTSCEECHHHHHHHHHHSSCCCGGG
T ss_pred cccccCCCcCCCCcce--eEE--CCCCCCcchHHHHHHHHhCCCCCccc
Confidence 4578999999988752 111 12236899999999999999887766
No 24
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=32.25 E-value=26 Score=29.25 Aligned_cols=13 Identities=31% Similarity=0.884 Sum_probs=7.2
Q ss_pred CcCCCCCCCCCcc
Q 017919 77 ALKCPRCESTNTK 89 (364)
Q Consensus 77 ~~~CPRC~S~~Tk 89 (364)
+-+||+|.|.+..
T Consensus 84 PsrCP~CkSe~Ie 96 (105)
T 2gmg_A 84 PSRCPKCKSEWIE 96 (105)
T ss_dssp CSSCSSSCCCCBC
T ss_pred CCCCcCCCCCccC
Confidence 4556666665543
No 25
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=32.02 E-value=29 Score=24.07 Aligned_cols=34 Identities=21% Similarity=0.485 Sum_probs=22.9
Q ss_pred ccCcCCCCCCCCCcceeeecCCCCCCCccccccccccccc
Q 017919 75 EAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTR 114 (364)
Q Consensus 75 e~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyWT~ 114 (364)
+..++||.|.+.+-.| ....-...|+.|+.-+..
T Consensus 3 ~~~~~CP~C~~~~l~~------d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 3 NKQKVCPACESAELIY------DPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp SSCCSCTTTSCCCEEE------ETTTTEEEESSSCCBCCC
T ss_pred CccEeCcCCCCcceEE------cCCCCeEECcccCCcccc
Confidence 3467899998854332 223456899999876654
No 26
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=29.69 E-value=19 Score=28.21 Aligned_cols=14 Identities=50% Similarity=0.802 Sum_probs=11.7
Q ss_pred CcCCCCCCCCCcce
Q 017919 77 ALKCPRCESTNTKF 90 (364)
Q Consensus 77 ~~~CPRC~S~~Tkf 90 (364)
..+||.|.|.||+.
T Consensus 55 g~kC~~C~SyNTr~ 68 (79)
T 2k2d_A 55 GMKCKICESYNTAQ 68 (79)
T ss_dssp CCCCTTTSCCCEEE
T ss_pred cccCcCCCCcCeEe
Confidence 44899999999983
No 27
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.42 E-value=34 Score=26.22 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=20.5
Q ss_pred cCcCCCCCCCCCcceeeecCCCCCCCccccccccccc
Q 017919 76 AALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYW 112 (364)
Q Consensus 76 ~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyW 112 (364)
+.+.||.|... .- | ....-...|++|++-+
T Consensus 7 eiL~CP~ck~~---L~-~---~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 7 DILACPICKGP---LK-L---SADKTELISKGAGLAY 36 (69)
T ss_dssp GTCCCTTTCCC---CE-E---CTTSSEEEETTTTEEE
T ss_pred hheeCCCCCCc---Ce-E---eCCCCEEEcCCCCcEe
Confidence 47899999964 22 2 2335668899998654
No 28
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=24.42 E-value=43 Score=25.67 Aligned_cols=35 Identities=26% Similarity=0.557 Sum_probs=22.8
Q ss_pred cCcCCCCCCCCCcceeeecCCCCCCCcccccccccccc-cCcc
Q 017919 76 AALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWT-RGGA 117 (364)
Q Consensus 76 ~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyWT-~GG~ 117 (364)
+.+.||.|... .-|- ...-...|++|++-+- +.|.
T Consensus 7 ~iL~CP~ck~~---L~~~----~~~~~LiC~~cg~~YPI~dGI 42 (70)
T 2js4_A 7 DILVCPVCKGR---LEFQ----RAQAELVCNADRLAFPVRDGV 42 (70)
T ss_dssp CCCBCTTTCCB---EEEE----TTTTEEEETTTTEEEEEETTE
T ss_pred hheECCCCCCc---CEEe----CCCCEEEcCCCCceecCCCCe
Confidence 47899999983 3322 2345688999987553 4443
No 29
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=23.27 E-value=29 Score=26.55 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=20.7
Q ss_pred cCcCCCCCCCCCcceeeecCCCCCCCccccccccccc
Q 017919 76 AALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYW 112 (364)
Q Consensus 76 ~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyW 112 (364)
+.+.||.|... .-| + ...-...|+.|++-+
T Consensus 9 eiL~CP~ck~~---L~~-~---~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKGP---LRY-L---ESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCCB---CEE-E---TTTTEEEETTTTEEE
T ss_pred HHhCCCCCCCc---CeE-e---CCCCEEEcCCCCccc
Confidence 47899999983 222 2 234568899998755
No 30
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=21.85 E-value=56 Score=24.48 Aligned_cols=24 Identities=29% Similarity=0.951 Sum_probs=19.4
Q ss_pred cCcCCCCCCCCCcceeeecCCCCCCCcccccccccc
Q 017919 76 AALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRY 111 (364)
Q Consensus 76 ~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRy 111 (364)
....||.|... ..|.+.|.+|.-|
T Consensus 29 ~l~~c~~cGe~------------~~~H~vc~~CG~Y 52 (60)
T 3v2d_5 29 TLVPCPECKAM------------KPPHTVCPECGYY 52 (60)
T ss_dssp CCEECTTTCCE------------ECTTSCCTTTCEE
T ss_pred ceeECCCCCCe------------ecceEEcCCCCcC
Confidence 48889999862 3889999999965
No 31
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=20.64 E-value=61 Score=28.36 Aligned_cols=32 Identities=25% Similarity=0.583 Sum_probs=25.0
Q ss_pred CcCCCCCCCCCcceeeecCCCCCCCcccccccccccccCc
Q 017919 77 ALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGG 116 (364)
Q Consensus 77 ~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyWT~GG 116 (364)
..+||.|.|..|-. ...-+.|..|.-=|+...
T Consensus 27 lP~CP~C~seytYe--------Dg~l~vCPeC~hEW~~~~ 58 (138)
T 2akl_A 27 LPPCPQCNSEYTYE--------DGALLVCPECAHEWSPNE 58 (138)
T ss_dssp SCCCTTTCCCCCEE--------CSSSEEETTTTEEECTTT
T ss_pred CCCCCCCCCcceEe--------cCCeEECCccccccCCcc
Confidence 46899999987732 245699999999997554
No 32
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=20.38 E-value=33 Score=23.16 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=20.4
Q ss_pred cCCCCCCCCCcceeeecCCCCCCCccccccccccc
Q 017919 78 LKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYW 112 (364)
Q Consensus 78 ~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyW 112 (364)
+.||-|.+.+|++--= ...--..|++|..-+
T Consensus 1 VlC~~C~~peT~l~~~----~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 1 VICRECGKPDTKIIKE----GRVHLLKCMACGAIR 31 (36)
T ss_dssp CCCSSSCSCEEEEEEE----TTEEEEEEETTTEEE
T ss_pred CCCcCCCCCCcEEEEe----CCcEEEEhhcCCCcc
Confidence 4699999999997431 112225688886543
No 33
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.36 E-value=37 Score=25.92 Aligned_cols=30 Identities=13% Similarity=0.410 Sum_probs=20.3
Q ss_pred cCcCCCCCCCCCcceeeecCCCCCCCccccccccccc
Q 017919 76 AALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYW 112 (364)
Q Consensus 76 ~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyW 112 (364)
+.+.||.|.. +.-|- ...-...|++|++-+
T Consensus 7 ~iL~CP~ck~---~L~~~----~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKG---RLEYH----QDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCC---BCEEE----TTTTEEEETTTTEEE
T ss_pred hheECCCCCC---cCeEe----CCCCEEEcCCCCcEe
Confidence 4789999996 33222 234668899998654
No 34
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=20.24 E-value=29 Score=27.53 Aligned_cols=37 Identities=30% Similarity=0.512 Sum_probs=27.8
Q ss_pred cCcCCCCCCCCCcceeeecCCCCCCCcccccccccccccCccccccccCCcc
Q 017919 76 AALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGC 127 (364)
Q Consensus 76 ~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk~CrRyWT~GG~lRnVPvGgG~ 127 (364)
-.+.|-.|-... ..-.|+||..|.. .||+.|+|--..
T Consensus 14 ~iLrC~aCf~~t----------~~~~k~FCp~CGn-----~TL~Rvsvsvd~ 50 (79)
T 2con_A 14 YILRCHGCFKTT----------SDMNRVFCGHCGN-----KTLKKVSVTIND 50 (79)
T ss_dssp EEEECSSSCCEE----------SCSSCCSCSSSCC-----SCCEEEECBCCS
T ss_pred eeeEecccceEC----------CCcccccccccCc-----ccceEEEEEECC
Confidence 377888886653 4478999999974 699999985443
No 35
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=20.02 E-value=59 Score=23.80 Aligned_cols=28 Identities=21% Similarity=0.642 Sum_probs=19.9
Q ss_pred cCcCCCCCCCCCcceeeecCCCCCCCccccc--cccccc
Q 017919 76 AALKCPRCESTNTKFCYFNNYSLSQPRHFCK--TCRRYW 112 (364)
Q Consensus 76 ~~~~CPRC~S~~Tkfcy~NNy~~~QPR~fCk--~CrRyW 112 (364)
+.+.||.|... . -|+. ....|+ +|++-+
T Consensus 9 ~iL~CP~c~~~---L-~~~~-----~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 9 EILACPACHAP---L-EERD-----AELICTGQDCGLAY 38 (56)
T ss_dssp TSCCCSSSCSC---E-EEET-----TEEEECSSSCCCEE
T ss_pred hheeCCCCCCc---c-eecC-----CEEEcCCcCCCcEE
Confidence 47899999984 2 2333 667899 897654
Done!