Your job contains 1 sequence.
>017920
MAITTTRSLSVTPVTRRSATPINPLRSSSLSYSLTRPFGSNLTLKVPSFRVSASSMSSIH
APESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIG
ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGA
GLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGN
PHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGA
GATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS
VLLN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017920
(364 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2084011 - symbol:AT3G53580 species:3702 "Arabi... 1302 7.9e-133 1
TIGR_CMR|CHY_1493 - symbol:CHY_1493 "diaminopimelate epim... 577 5.3e-56 1
TIGR_CMR|GSU_0531 - symbol:GSU_0531 "diaminopimelate epim... 539 5.6e-52 1
TIGR_CMR|DET_0740 - symbol:DET_0740 "diaminopimelate epim... 475 3.4e-45 1
TIGR_CMR|SO_4308 - symbol:SO_4308 "diaminopimelate epimer... 467 2.4e-44 1
UNIPROTKB|P0A6K1 - symbol:dapF "diaminopimelate epimerase... 445 5.2e-42 1
TIGR_CMR|BA_5170 - symbol:BA_5170 "diaminopimelate epimer... 434 7.5e-41 1
TIGR_CMR|CPS_0077 - symbol:CPS_0077 "diaminopimelate epim... 427 4.2e-40 1
UNIPROTKB|Q9KVL6 - symbol:dapF "Diaminopimelate epimerase... 410 2.6e-38 1
TIGR_CMR|VC_0126 - symbol:VC_0126 "diaminopimelate epimer... 410 2.6e-38 1
TIGR_CMR|CBU_1970 - symbol:CBU_1970 "diaminopimelate epim... 391 2.7e-36 1
DICTYBASE|DDB_G0267388 - symbol:dafE "diaminopimelate epi... 233 2.8e-30 2
TIGR_CMR|ECH_0050 - symbol:ECH_0050 "diaminopimelate epim... 273 8.7e-24 1
TIGR_CMR|SPO_0278 - symbol:SPO_0278 "diaminopimelate epim... 247 4.9e-21 1
DICTYBASE|DDB_G0289455 - symbol:DDB_G0289455 species:4468... 162 1.0e-19 2
TIGR_CMR|CJE_1702 - symbol:CJE_1702 "diaminopimelate epim... 197 1.9e-15 1
DICTYBASE|DDB_G0270030 - symbol:DDB_G0270030 species:4468... 156 3.8e-15 2
DICTYBASE|DDB_G0270032 - symbol:DDB_G0270032 species:4468... 147 2.3e-14 2
UNIPROTKB|P63897 - symbol:dapF "Diaminopimelate epimerase... 181 5.5e-12 1
>TAIR|locus:2084011 [details] [associations]
symbol:AT3G53580 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008837 "diaminopimelate epimerase activity"
evidence=IEA;IGI;ISS] [GO:0009089 "lysine biosynthetic process via
diaminopimelate" evidence=IEA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006744 "ubiquinone biosynthetic process" evidence=RCA]
InterPro:IPR001653 InterPro:IPR018510 Pfam:PF01678 PROSITE:PS01326
UniPathway:UPA00034 GO:GO:0009570 EMBL:CP002686
GenomeReviews:BA000014_GR EMBL:AL132966 GO:GO:0009089 EMBL:AY126996
EMBL:AY143871 IPI:IPI00545144 PIR:T45898 RefSeq:NP_190926.1
UniGene:At.21032 PDB:3EJX PDB:3EKM PDBsum:3EJX PDBsum:3EKM
ProteinModelPortal:Q9LFG2 SMR:Q9LFG2 STRING:Q9LFG2 PaxDb:Q9LFG2
PRIDE:Q9LFG2 EnsemblPlants:AT3G53580.1 GeneID:824526
KEGG:ath:AT3G53580 TAIR:At3g53580 eggNOG:COG0253
HOGENOM:HOG000220466 InParanoid:Q9LFG2 KO:K01778 OMA:VPHAVIF
PhylomeDB:Q9LFG2 ProtClustDB:PLN02536 EvolutionaryTrace:Q9LFG2
Genevestigator:Q9LFG2 GO:GO:0008837 TIGRFAMs:TIGR00652
Uniprot:Q9LFG2
Length = 362
Score = 1302 (463.4 bits), Expect = 7.9e-133, P = 7.9e-133
Identities = 250/364 (68%), Positives = 280/364 (76%)
Query: 1 MAITTTRSLSVTPVTRRSATPINPXXXXXXXXXXTRPFGSNLTLKVPSFRVSAS-SMSSI 59
M I ++SV P +RR + + F K PS RVSA+ SM ++
Sbjct: 1 MEIAAVSTVSVAPQSRRVSNAFSRNLGSVSSLSFGF-FEKEYCFKSPSLRVSAAASMDAV 59
Query: 60 HAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGI 119
A E S SFLD++E+G LHFVKYHGLGNDFILVDNR+S+EP+IT EQAAKLCDRNFG+
Sbjct: 60 TA-EKFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGV 118
Query: 120 GADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTG 179
GADGVIFAMPGVNGTDY MRIFNSDGSEPEMCGNGVRCFARFIAELENL GK SFT+HTG
Sbjct: 119 GADGVIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTG 178
Query: 180 AGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMG 239
AGLIVPEIQDDG+VKVDMG PILKA DVPT LS NK ++VV++EL VDGV WNVTCVSMG
Sbjct: 179 AGLIVPEIQDDGQVKVDMGTPILKAQDVPTKLSGNKGEAVVEAELVVDGVSWNVTCVSMG 238
Query: 240 NPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERX 299
NPHC+TFG K G NLKVD LNL EIGPKFEHH +FPARTNTEFVE++S S LKMRVWER
Sbjct: 239 NPHCITFGKKGGPNLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERG 298
Query: 300 XXXXXXXXXXXXXXXXXXXLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
LEG A+R+CTVDLPGGPL+IEWK+EDNH+YMTGPAE VFYG
Sbjct: 299 AGATLACGTGACALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYG 358
Query: 360 SVLL 363
S LL
Sbjct: 359 SALL 362
>TIGR_CMR|CHY_1493 [details] [associations]
symbol:CHY_1493 "diaminopimelate epimerase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008837
"diaminopimelate epimerase activity" evidence=ISS] [GO:0009089
"lysine biosynthetic process via diaminopimelate" evidence=ISS]
HAMAP:MF_00197 InterPro:IPR001653 InterPro:IPR018510 Pfam:PF01678
PROSITE:PS01326 UniPathway:UPA00034 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0009089 eggNOG:COG0253
HOGENOM:HOG000220466 KO:K01778 GO:GO:0008837 TIGRFAMs:TIGR00652
OMA:RFTKMQG RefSeq:YP_360325.1 HSSP:P44859
ProteinModelPortal:Q3AC09 STRING:Q3AC09 GeneID:3727435
KEGG:chy:CHY_1493 PATRIC:21276117
BioCyc:CHYD246194:GJCN-1492-MONOMER Uniprot:Q3AC09
Length = 274
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 124/288 (43%), Positives = 168/288 (58%)
Query: 79 LHFVKYHGLGNDFILVD---NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTD 135
+ F+K HGLGNDF++VD N+N ++ + A K+CDR FGIGADG++ +P D
Sbjct: 1 MEFLKMHGLGNDFVVVDEIKNQNLVNKNLS-DLAKKICDRRFGIGADGLVLLLPSEKA-D 58
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ MRI NSDGSE EMCGN +RC AR+ E N K+ V T AG+I PE+ ++ V+V
Sbjct: 59 FKMRIINSDGSEAEMCGNAIRCVARYYVEKYN-PAKKQLEVETLAGIIKPEVLENNMVRV 117
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
DMG PILK ++P ++ ++ V L+V G K+ T VSMGNPH V F
Sbjct: 118 DMGRPILKPQEIPVAV----EEEPVNIPLEVLGQKFYFTAVSMGNPHAVIFVDS------ 167
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXX 315
+ K+ L + GP E H +FP +TN EFVEI+SP+++K+ VWER
Sbjct: 168 LAKIELEKYGPLIETHPLFPRKTNVEFVEILSPAKVKVFVWERGAGATLACGTGASAVVV 227
Query: 316 XXXLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ GH + V LPGG L I W ++ VYMTGPAE+VF G L
Sbjct: 228 AGRILGHLQEDVEVVLPGGSLFINWVFGES-VYMTGPAEIVFKGEYFL 274
>TIGR_CMR|GSU_0531 [details] [associations]
symbol:GSU_0531 "diaminopimelate epimerase" species:243231
"Geobacter sulfurreducens PCA" [GO:0008837 "diaminopimelate
epimerase activity" evidence=ISS] [GO:0009089 "lysine biosynthetic
process via diaminopimelate" evidence=ISS] HAMAP:MF_00197
InterPro:IPR001653 InterPro:IPR018510 Pfam:PF01678 PROSITE:PS01326
UniPathway:UPA00034 GO:GO:0005737 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009089 HOGENOM:HOG000220466
KO:K01778 GO:GO:0008837 TIGRFAMs:TIGR00652 ProtClustDB:PRK00450
RefSeq:NP_951589.1 ProteinModelPortal:Q74FS5 SMR:Q74FS5
GeneID:2686033 KEGG:gsu:GSU0531 PATRIC:22023817 OMA:DDCEVMM
BioCyc:GSUL243231:GH27-499-MONOMER Uniprot:Q74FS5
Length = 282
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 121/292 (41%), Positives = 168/292 (57%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAA-KLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG GND++ V N E + PEQ A K+ +RNFGIG+DG+I MP + D
Sbjct: 1 MKFTKMHGAGNDYVYV---NCFEETVGNPEQTAIKVSNRNFGIGSDGLILIMPS-DKADV 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQD--DGKV- 193
MR+FNSDGSE EMCGNG+RC A++ + + K+ T TGAG++ ++ DG+V
Sbjct: 57 RMRMFNSDGSESEMCGNGIRCVAKYAYD-HGIVTKKEITAETGAGVLTLQLFTGADGRVD 115
Query: 194 --KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
+V+MG+P L +++P L D VV L++ +N+TCVSMGNPHCV F +
Sbjct: 116 RVRVNMGKPRLTRAEIPM-LGDPGDGQVVGQPLNILHTTFNITCVSMGNPHCVIF-VDDV 173
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXX 311
+N +V+K GP E+H +FP RTN EFV+IIS ++++ R WER
Sbjct: 174 ENFQVEKY-----GPLIENHEMFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGAS 228
Query: 312 XXXXXXXLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
L G E+ L GG L++EW E D +YMTGPA VF G + L
Sbjct: 229 AVCVAGALNGLTEKNILNHLSGGDLELEWAE-DGFLYMTGPATEVFSGEINL 279
>TIGR_CMR|DET_0740 [details] [associations]
symbol:DET_0740 "diaminopimelate epimerase" species:243164
"Dehalococcoides ethenogenes 195" [GO:0008837 "diaminopimelate
epimerase activity" evidence=ISS] [GO:0009089 "lysine biosynthetic
process via diaminopimelate" evidence=ISS] HAMAP:MF_00197
InterPro:IPR001653 InterPro:IPR018510 Pfam:PF01678 PROSITE:PS01326
UniPathway:UPA00034 GO:GO:0005737 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0009089 eggNOG:COG0253
HOGENOM:HOG000220466 KO:K01778 GO:GO:0008837 TIGRFAMs:TIGR00652
ProtClustDB:PRK00450 RefSeq:YP_181475.1 ProteinModelPortal:Q3Z8H4
STRING:Q3Z8H4 GeneID:3229959 KEGG:det:DET0740 PATRIC:21608543
OMA:ATETHTT BioCyc:DETH243164:GJNF-741-MONOMER Uniprot:Q3Z8H4
Length = 284
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 98/288 (34%), Positives = 154/288 (53%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K +GNDF+L+D + E + + A +C R+FG GADG++ +P D+ M
Sbjct: 1 MKFTKLQSVGNDFVLIDPQG--EDKDWSKLALHMCHRHFGAGADGLMLILPSAKA-DFRM 57
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RIFN+DGSE E+CGNG+RC +IA + + ++ T AG+ +I DG+++ MG
Sbjct: 58 RIFNADGSEAEICGNGLRCLIHYIAANNLIGNRDELSIETLAGIRNAQIFADGRIRTTMG 117
Query: 199 EPILKASDVPTSLSAN----KDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
+P+ +A +P + + Q + L+++ + ++ VSMGNPH + F TK
Sbjct: 118 KPMFEAHQIPVAAEPDPKYYNGQLISDFPLNINNRRLLLSLVSMGNPHAIHFCTKS---- 173
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXX 314
V++ L E+GP E H FP RTN E I+ +K+RVWER
Sbjct: 174 -VEEFPLGEVGPLVETHKAFPKRTNFEVANILDSEHIKVRVWERGVGETLGCGSGASAVA 232
Query: 315 XXXXLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
+ G+ + + LPGG L +EW + N VY+TG AE+++ G L
Sbjct: 233 VAAQILGYVGKFVYIKLPGGTLGVEW-DGHNDVYLTGKAEIIYTGEWL 279
>TIGR_CMR|SO_4308 [details] [associations]
symbol:SO_4308 "diaminopimelate epimerase" species:211586
"Shewanella oneidensis MR-1" [GO:0008837 "diaminopimelate epimerase
activity" evidence=ISS] [GO:0009089 "lysine biosynthetic process
via diaminopimelate" evidence=ISS] HAMAP:MF_00197
InterPro:IPR001653 InterPro:IPR018510 Pfam:PF01678 PROSITE:PS01326
UniPathway:UPA00034 GO:GO:0005737 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0009089 eggNOG:COG0253
HOGENOM:HOG000220466 KO:K01778 GO:GO:0008837 TIGRFAMs:TIGR00652
OMA:RFTKMQG ProtClustDB:PRK00450 RefSeq:NP_719833.1
ProteinModelPortal:Q8E9H5 SMR:Q8E9H5 GeneID:1171913
KEGG:son:SO_4308 PATRIC:23528264 Uniprot:Q8E9H5
Length = 275
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 104/286 (36%), Positives = 148/286 (51%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD +PEQ +L DRNFG+G D ++ P + D+
Sbjct: 2 IQFTKMHGLGNDFMVVDGITQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFH 60
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DG E E CGNG RCFARF+ + L K V T AG + ++ DG V V+M
Sbjct: 61 YRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVNM 119
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P+L+ S +P A K + L + SMGNPHCV ++ N
Sbjct: 120 GVPVLEPSQIP--FKAKKAEKTYL--LQTPQQTFLCGAASMGNPHCV-LDVEDVANA--- 171
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXX 317
N+AEIG H FP N F+++++ +K+RV+ER
Sbjct: 172 --NVAEIGALLTKHERFPRGVNVGFMQVVNAGHIKLRVYERGAAETLACGTGACAAVVVG 229
Query: 318 XLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
++G +++ VDLPGG L I W+ E ++MTGPA+ V+ G + L
Sbjct: 230 QIQGKLDQQVQVDLPGGSLTINWEGEGKPLWMTGPAQHVYDGQIQL 275
>UNIPROTKB|P0A6K1 [details] [associations]
symbol:dapF "diaminopimelate epimerase" species:83333
"Escherichia coli K-12" [GO:0009089 "lysine biosynthetic process
via diaminopimelate" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0009085 "lysine biosynthetic process"
evidence=IEA] [GO:0008652 "cellular amino acid biosynthetic
process" evidence=IEA] [GO:0008837 "diaminopimelate epimerase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_00197 InterPro:IPR001653 InterPro:IPR018510 Pfam:PF01678
PROSITE:PS01326 UniPathway:UPA00034 GO:GO:0005737 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0009089 EMBL:M87049 EMBL:X66782 eggNOG:COG0253
HOGENOM:HOG000220466 KO:K01778 GO:GO:0008837 TIGRFAMs:TIGR00652
OMA:RFTKMQG ProtClustDB:PRK00450 EMBL:X12968 EMBL:M38257 PIR:B65185
RefSeq:NP_418254.2 RefSeq:YP_491632.1 ProteinModelPortal:P0A6K1
SMR:P0A6K1 DIP:DIP-47856N IntAct:P0A6K1 PRIDE:P0A6K1
EnsemblBacteria:EBESCT00000003511 EnsemblBacteria:EBESCT00000018168
GeneID:12934260 GeneID:948364 KEGG:ecj:Y75_p3368 KEGG:eco:b3809
PATRIC:32123119 EchoBASE:EB0205 EcoGene:EG10209
BioCyc:EcoCyc:DIAMINOPIMEPIM-MONOMER
BioCyc:ECOL316407:JW5592-MONOMER
BioCyc:MetaCyc:DIAMINOPIMEPIM-MONOMER Genevestigator:P0A6K1
Uniprot:P0A6K1
Length = 274
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 107/288 (37%), Positives = 150/288 (52%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGT-DYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP ANK + K+ + + + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVP--FRANKAE---KTYI-MRAAEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXX 315
VD + +GP E H FP R N F++++ +++RV+ER
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 XXXLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>TIGR_CMR|BA_5170 [details] [associations]
symbol:BA_5170 "diaminopimelate epimerase" species:198094
"Bacillus anthracis str. Ames" [GO:0008837 "diaminopimelate
epimerase activity" evidence=ISS] [GO:0009089 "lysine biosynthetic
process via diaminopimelate" evidence=ISS] HAMAP:MF_00197
InterPro:IPR001653 InterPro:IPR018510 Pfam:PF01678 PROSITE:PS01326
UniPathway:UPA00034 GO:GO:0005737 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0009089 eggNOG:COG0253
HOGENOM:HOG000220466 KO:K01778 GO:GO:0008837 TIGRFAMs:TIGR00652
RefSeq:NP_847354.1 RefSeq:YP_031049.1 RefSeq:YP_052652.1 PDB:2OTN
PDBsum:2OTN ProteinModelPortal:Q81XR2 SMR:Q81XR2 IntAct:Q81XR2
DNASU:1084119 EnsemblBacteria:EBBACT00000012901
EnsemblBacteria:EBBACT00000016284 EnsemblBacteria:EBBACT00000020187
GeneID:1084119 GeneID:2821103 GeneID:2848459 KEGG:ban:BA_5170
KEGG:bar:GBAA_5170 KEGG:bat:BAS4806 OMA:RFTKMQG
ProtClustDB:PRK00450 BioCyc:BANT260799:GJAJ-4884-MONOMER
BioCyc:BANT261594:GJ7F-5046-MONOMER EvolutionaryTrace:Q81XR2
Uniprot:Q81XR2
Length = 288
Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
Identities = 108/289 (37%), Positives = 148/289 (51%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDR----NFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A + ++ N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L FT+ T AG++ E+ ++GKV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIETLAGIVTAEVTVEEGKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTRAEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXX 312
V++ L +GP E H +FP R N EF+EI++ ++ RVWER
Sbjct: 176 ---VEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 XXXXXXLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
L G ER TV L GG L I W EE N V M GPAEV+ G
Sbjct: 233 AVVASILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
>TIGR_CMR|CPS_0077 [details] [associations]
symbol:CPS_0077 "diaminopimelate epimerase" species:167879
"Colwellia psychrerythraea 34H" [GO:0008837 "diaminopimelate
epimerase activity" evidence=ISS] [GO:0009089 "lysine biosynthetic
process via diaminopimelate" evidence=ISS] HAMAP:MF_00197
InterPro:IPR001653 InterPro:IPR018510 Pfam:PF01678 PROSITE:PS01326
UniPathway:UPA00034 GO:GO:0005737 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009089 eggNOG:COG0253
HOGENOM:HOG000220466 KO:K01778 GO:GO:0008837 TIGRFAMs:TIGR00652
OMA:RFTKMQG HSSP:P44859 RefSeq:YP_266845.1
ProteinModelPortal:Q48AR8 SMR:Q48AR8 STRING:Q48AR8 GeneID:3518496
KEGG:cps:CPS_0077 PATRIC:21463577
BioCyc:CPSY167879:GI48-180-MONOMER Uniprot:Q48AR8
Length = 276
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 98/286 (34%), Positives = 149/286 (52%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
++F K HGLGNDF+++DN ++PEQ K +RNFG+G D ++ P + D+
Sbjct: 3 VNFSKMHGLGNDFLVLDNVTQNV-FLSPEQITKFANRNFGVGFDQLLVVEPPYDPDLDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI+N+DGSE CGNG RCFA+F+ ++ L K V T G + I+ DG + V M
Sbjct: 62 YRIYNADGSEVGQCGNGARCFAKFV-RMKGLCNKHKIKVSTSTGKMNLHIERDGNISVTM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
P + +P + + +++SE + V C VSMGNPHCV T +
Sbjct: 121 PVPQFEPKKIPFTAQKTEGTYILRSESET------VLCGAVSMGNPHCVV--TVDS---- 168
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXX 315
V + ++ +G + H FP N F+EI+SP+ +K+RV+ER
Sbjct: 169 VAEADVESLGKELSVHERFPEDANVGFMEIVSPNYIKLRVYERGAAETLACGSGACAAVV 228
Query: 316 XXXLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
++ ++ TV+LPGG L I W+ + V M+GPA VF G +
Sbjct: 229 IGYMQKKLAKQVTVELPGGKLRIFWQGPGHPVKMSGPATHVFDGQI 274
>UNIPROTKB|Q9KVL6 [details] [associations]
symbol:dapF "Diaminopimelate epimerase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008837
"diaminopimelate epimerase activity" evidence=ISS] [GO:0009089
"lysine biosynthetic process via diaminopimelate" evidence=ISS]
HAMAP:MF_00197 InterPro:IPR001653 InterPro:IPR018510 Pfam:PF01678
PROSITE:PS01326 UniPathway:UPA00034 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0009089 eggNOG:COG0253 KO:K01778
GO:GO:0008837 TIGRFAMs:TIGR00652 OMA:RFTKMQG ProtClustDB:PRK00450
PIR:G82360 RefSeq:NP_229784.2 ProteinModelPortal:Q9KVL6 SMR:Q9KVL6
DNASU:2614550 GeneID:2614550 KEGG:vch:VC0126 PATRIC:20079296
Uniprot:Q9KVL6
Length = 276
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 96/285 (33%), Positives = 148/285 (51%)
Query: 80 HFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTM 138
HF K HGLGNDF++VD +PE +L DR+ G+G D ++ P +D+
Sbjct: 4 HFSKMHGLGNDFMVVDCITQNV-FFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHY 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RIFN+DGSE E CGNG RCFARF+ ++ L K + V T G +V ++++ + V+MG
Sbjct: 63 RIFNADGSEVEQCGNGARCFARFV-RMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMG 121
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLKV 256
P + + +P ++ +++ G + + C VSMGNPH VT + + V
Sbjct: 122 VPEFEPNKIPFRAKQSEKTYILRV-----G-EHTLFCGAVSMGNPHVVTV-VDDIRTAAV 174
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXX 316
+ L GP E H FP R N F++++S ++ +RV+ER
Sbjct: 175 ETL-----GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAV 229
Query: 317 XXLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
L+G + + V LPGG L+I W+ +YMTGPA ++ G +
Sbjct: 230 GILQGLLDEQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 274
>TIGR_CMR|VC_0126 [details] [associations]
symbol:VC_0126 "diaminopimelate epimerase" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008837 "diaminopimelate
epimerase activity" evidence=ISS] [GO:0009089 "lysine biosynthetic
process via diaminopimelate" evidence=ISS] HAMAP:MF_00197
InterPro:IPR001653 InterPro:IPR018510 Pfam:PF01678 PROSITE:PS01326
UniPathway:UPA00034 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0009089 eggNOG:COG0253 KO:K01778
GO:GO:0008837 TIGRFAMs:TIGR00652 OMA:RFTKMQG ProtClustDB:PRK00450
PIR:G82360 RefSeq:NP_229784.2 ProteinModelPortal:Q9KVL6 SMR:Q9KVL6
DNASU:2614550 GeneID:2614550 KEGG:vch:VC0126 PATRIC:20079296
Uniprot:Q9KVL6
Length = 276
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 96/285 (33%), Positives = 148/285 (51%)
Query: 80 HFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTM 138
HF K HGLGNDF++VD +PE +L DR+ G+G D ++ P +D+
Sbjct: 4 HFSKMHGLGNDFMVVDCITQNV-FFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHY 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RIFN+DGSE E CGNG RCFARF+ ++ L K + V T G +V ++++ + V+MG
Sbjct: 63 RIFNADGSEVEQCGNGARCFARFV-RMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMG 121
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLKV 256
P + + +P ++ +++ G + + C VSMGNPH VT + + V
Sbjct: 122 VPEFEPNKIPFRAKQSEKTYILRV-----G-EHTLFCGAVSMGNPHVVTV-VDDIRTAAV 174
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXX 316
+ L GP E H FP R N F++++S ++ +RV+ER
Sbjct: 175 ETL-----GPLLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAV 229
Query: 317 XXLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
L+G + + V LPGG L+I W+ +YMTGPA ++ G +
Sbjct: 230 GILQGLLDEQVRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 274
>TIGR_CMR|CBU_1970 [details] [associations]
symbol:CBU_1970 "diaminopimelate epimerase" species:227377
"Coxiella burnetii RSA 493" [GO:0008837 "diaminopimelate epimerase
activity" evidence=ISS] [GO:0009089 "lysine biosynthetic process
via diaminopimelate" evidence=ISS] HAMAP:MF_00197
InterPro:IPR001653 InterPro:IPR018510 Pfam:PF01678 PROSITE:PS01326
UniPathway:UPA00034 GO:GO:0005737 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0009089 eggNOG:COG0253
HOGENOM:HOG000220466 KO:K01778 GO:GO:0008837 TIGRFAMs:TIGR00652
OMA:RFTKMQG ProtClustDB:PRK00450 HSSP:P44859 RefSeq:NP_820945.1
ProteinModelPortal:Q83AD4 PRIDE:Q83AD4 GeneID:1209883
KEGG:cbu:CBU_1970 PATRIC:17932683
BioCyc:CBUR227377:GJ7S-1944-MONOMER Uniprot:Q83AD4
Length = 276
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 98/290 (33%), Positives = 145/290 (50%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGT-DYT 137
++F K G GNDF+++D T ++T Q K+ +R FG+G D ++ P N + D+
Sbjct: 3 VNFTKMQGSGNDFVVID-ATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RC ARFI L+ ++ V T ++ +IQ DGKV V M
Sbjct: 62 FRIFNADGSEVGQCGNGARCIARFI-RAHQLSDREELRVSTLNEVLELKIQPDGKVSVKM 120
Query: 198 GEPILKASDVPTSLS--ANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
G P + +++P S AN V +++ VK V V++GNPH + +
Sbjct: 121 GVPRFEPTEIPFIASGVANFYDIAVDNQI----VKLGV--VNIGNPHAI---------IP 165
Query: 256 VDKLNLAEIGP---KFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXX 312
V+++N E+G + H FP N F+++I P +++RV+ER
Sbjct: 166 VERINAEEVGKLGARLSVHECFPEGANVGFMQVIDPQNIRLRVYERGTGETLACGSNACA 225
Query: 313 XXXXXXLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
G + R V PGG L I+W+ V MTGPA VF G L
Sbjct: 226 AVAVGRRCGLLQERVVVSQPGGSLTIDWQGPLTPVTMTGPATTVFCGEWL 275
>DICTYBASE|DDB_G0267388 [details] [associations]
symbol:dafE "diaminopimelate epimerase" species:44689
"Dictyostelium discoideum" [GO:0009089 "lysine biosynthetic process
via diaminopimelate" evidence=IEA] [GO:0008837 "diaminopimelate
epimerase activity" evidence=IEA] HAMAP:MF_00197 InterPro:IPR001653
Pfam:PF01678 dictyBase:DDB_G0267388 GenomeReviews:CM000150_GR
EMBL:AAFI02000003 GO:GO:0009089 KO:K01778 GO:GO:0008837
TIGRFAMs:TIGR00652 RefSeq:XP_647106.1 ProteinModelPortal:Q55GS8
EnsemblProtists:DDB0220128 GeneID:8615910 KEGG:ddi:DDB_G0267388
OMA:VEWREED Uniprot:Q55GS8
Length = 514
Score = 233 (87.1 bits), Expect = 2.8e-30, Sum P(2) = 2.8e-30
Identities = 51/151 (33%), Positives = 75/151 (49%)
Query: 211 LSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEH 270
LS N + + G N T VSMGNPHCV +N VD+ + G E
Sbjct: 359 LSTNSSYNEYSKVIQCGGHFINSTLVSMGNPHCVL----HLEN--VDEFPMDYYGKVIES 412
Query: 271 HSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXXLEGHAERRCTVD 330
H +FP +TN EFV++ + L++RVW+R L G R+ V
Sbjct: 413 HPIFPQKTNVEFVQVKTRDSLRVRVWQRGIGVTNSCGTGAAAALVSGVLRGKNNRKANVQ 472
Query: 331 LPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+ GG L++EW+EED+ V+++ P+ VF GS+
Sbjct: 473 MDGGILEVEWREEDDKVFVSCPSVTVFEGSI 503
Score = 155 (59.6 bits), Expect = 2.8e-30, Sum P(2) = 2.8e-30
Identities = 42/103 (40%), Positives = 54/103 (52%)
Query: 76 SGFLHFVKYHGLGNDFIL--VDN-----RNST-EPRITPEQ--AAKLCDRNFGIGADGVI 125
S L F K H G DFI+ +DN NS+ P I Q A +LCDR G+GAD +
Sbjct: 59 SVILKFCKMHVRGQDFIIFHIDNLRVEYNNSSFRPSIQVLQNIAQRLCDREQGVGADNTL 118
Query: 126 FAMPG----VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 164
P +N TD+ + IFNSDGS E C GV C ++I +
Sbjct: 119 VLTPPPNDKLNETDFQLLIFNSDGSIAENCTTGVSCVCKYIVD 161
>TIGR_CMR|ECH_0050 [details] [associations]
symbol:ECH_0050 "diaminopimelate epimerase" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0008837 "diaminopimelate
epimerase activity" evidence=ISS] [GO:0009089 "lysine biosynthetic
process via diaminopimelate" evidence=ISS] HAMAP:MF_00197
InterPro:IPR001653 InterPro:IPR018510 Pfam:PF01678 PROSITE:PS01326
UniPathway:UPA00034 GO:GO:0005737 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0009089 eggNOG:COG0253
HOGENOM:HOG000220466 KO:K01778 OMA:VPHAVIF GO:GO:0008837
TIGRFAMs:TIGR00652 RefSeq:YP_506881.1 ProteinModelPortal:Q2GI52
STRING:Q2GI52 GeneID:3926983 KEGG:ech:ECH_0050 PATRIC:20575671
ProtClustDB:CLSK749319 BioCyc:ECHA205920:GJNR-50-MONOMER
Uniprot:Q2GI52
Length = 267
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 73/248 (29%), Positives = 110/248 (44%)
Query: 112 LCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGK 171
+ +R GIG D +I D M I+N+DGS+ EMCGN RC L N
Sbjct: 32 IANRKTGIGCDQIIIITESEKA-DCFMHIYNADGSKVEMCGNAARCVGYL---LSNEKQD 87
Query: 172 QSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKW 231
+ T+ ++ + +V+V++G +D+PTS + ++ E+ D V
Sbjct: 88 NNITIELSDRILSCLRTSENRVQVNIGVAKFHWTDIPTSQECDTLHLPIELEMLSDPVGI 147
Query: 232 NVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQL 291
NV GNPH + F + + +DKL GPK E+H +FP R N EI+S ++
Sbjct: 148 NV-----GNPHAIFF-VDSIETIPLDKL-----GPKLENHHLFPKRANISIAEIVSRDKI 196
Query: 292 KMRVWERXXXXXXXXXXXXXXXXXXXXLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTG 351
K+RVWER + + V L GG L I + + DN + M G
Sbjct: 197 KLRVWERGTGETASCGSGACAALVAAIRRQYTNKTAVVCLQGGDLLISY-QHDNTILMEG 255
Query: 352 PAEVVFYG 359
+F G
Sbjct: 256 MVSYIFNG 263
Score = 197 (74.4 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 54/181 (29%), Positives = 85/181 (46%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F+K HG NDF+++D R + I + A +R GIG D +I D M
Sbjct: 2 IDFIKMHGTSNDFVIIDCRKKSYSNINYKAIA---NRKTGIGCDQIIIITESEKA-DCFM 57
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
I+N+DGS+ EMCGN RC L N + T+ ++ + +V+V++G
Sbjct: 58 HIYNADGSKVEMCGNAARCVGYL---LSNEKQDNNITIELSDRILSCLRTSENRVQVNIG 114
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
+D+PTS + ++ E+ D V NV GNPH + F + + +DK
Sbjct: 115 VAKFHWTDIPTSQECDTLHLPIELEMLSDPVGINV-----GNPHAIFF-VDSIETIPLDK 168
Query: 259 L 259
L
Sbjct: 169 L 169
>TIGR_CMR|SPO_0278 [details] [associations]
symbol:SPO_0278 "diaminopimelate epimerase" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0008837 "diaminopimelate epimerase
activity" evidence=ISS] [GO:0009089 "lysine biosynthetic process
via diaminopimelate" evidence=ISS] HAMAP:MF_00197
InterPro:IPR001653 InterPro:IPR018510 Pfam:PF01678 PROSITE:PS01326
UniPathway:UPA00034 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0009089 HOGENOM:HOG000220466
KO:K01778 GO:GO:0008837 TIGRFAMs:TIGR00652 RefSeq:YP_165542.1
ProteinModelPortal:Q5LX66 GeneID:3196503 KEGG:sil:SPO0278
PATRIC:23373807 OMA:GMGNPHC ProtClustDB:CLSK933202 Uniprot:Q5LX66
Length = 269
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 65/199 (32%), Positives = 93/199 (46%)
Query: 160 RFIAE-LENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQS 218
R IA L + GK + T G + DG V+MG P L ++P L+ D
Sbjct: 75 RCIARHLMDETGKTELHLTTDRGDLYARDAGDGLTSVNMGAPQLLWHEIP--LAEEMDTL 132
Query: 219 VVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPART 278
EL ++G T MGNPHC TF + + + LAE G ++EHH ++P RT
Sbjct: 133 ----ELPIEG---GPTATGMGNPHC-TFFVADAEAIP-----LAEFGARYEHHPLYPQRT 179
Query: 279 NTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXXXXXLEGHAERRCTVDLPGGPLDI 338
N + +I P +++MRVWER G R+ +DL GG + I
Sbjct: 180 NLQVAQITGPDRIRMRVWERGVGITLASGSSSCATAVAAARRGLTGRKVQIDLDGGTIWI 239
Query: 339 EWKEEDNHVYMTGPAEVVF 357
+W+E+ V+MTGP VF
Sbjct: 240 DWREDG--VWMTGPTMHVF 256
Score = 221 (82.9 bits), Expect = 2.9e-18, P = 2.9e-18
Identities = 62/167 (37%), Positives = 82/167 (49%)
Query: 81 FVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMR 139
F+K HGLGNDF++VD R P RIT A + R+ G+G D + PG G D +
Sbjct: 3 FMKMHGLGNDFVVVDAR--LHPVRITGALARGIAHRHLGVGFDQLAVIEPG-KG-DAHLV 58
Query: 140 IFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
+N+DGS CGN RC AR + + E GK + T G + DG V+MG
Sbjct: 59 FYNADGSTSAACGNATRCIARHLMD-ET--GKTELHLTTDRGDLYARDAGDGLTSVNMGA 115
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTF 246
P L ++P L+ D EL ++G T MGNPHC F
Sbjct: 116 PQLLWHEIP--LAEEMDTL----ELPIEG---GPTATGMGNPHCTFF 153
>DICTYBASE|DDB_G0289455 [details] [associations]
symbol:DDB_G0289455 species:44689 "Dictyostelium
discoideum" [GO:0009089 "lysine biosynthetic process via
diaminopimelate" evidence=IEA] [GO:0008837 "diaminopimelate
epimerase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] HAMAP:MF_00197 InterPro:IPR001653 InterPro:IPR018510
Pfam:PF01678 PROSITE:PS01326 dictyBase:DDB_G0289455 GO:GO:0005737
EMBL:AAFI02000141 GO:GO:0009089 eggNOG:COG0253 KO:K01778
GO:GO:0008837 TIGRFAMs:TIGR00652 RefSeq:XP_636208.1
ProteinModelPortal:Q54HH7 STRING:Q54HH7 EnsemblProtists:DDB0188427
GeneID:8627146 KEGG:ddi:DDB_G0289455 InParanoid:Q54HH7 OMA:NETWMPS
ProtClustDB:CLSZ2429769 Uniprot:Q54HH7
Length = 356
Score = 162 (62.1 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 43/106 (40%), Positives = 55/106 (51%)
Query: 81 FVKYHGLGNDFILVDNR-----NSTEPRIT----PEQAAKLCDRNFGIGADGVIFAM--P 129
F K HG GNDFI+ +N + +E IT E KL R G+G D I P
Sbjct: 15 FSKMHGAGNDFIVFENNKVKRLDGSENEITLKELKEITLKLSHRKLGVGFDQAIIINNNP 74
Query: 130 GV-NGTDYTMRIFNSDGSEPEMCGNGVRCFARFIA----ELENLNG 170
V Y M + NSDG + MCGNGVRCF+++I E ++LNG
Sbjct: 75 KVLKSAHYEMIVINSDGEQASMCGNGVRCFSKYIIDNCIESKSLNG 120
Score = 137 (53.3 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 45/144 (31%), Positives = 63/144 (43%)
Query: 236 VSMGNPHCVTFGTK--EGQNLK---VDK------LNLAEIGPKFEHHSVFPARTNTEFVE 284
VSMGNPHCV F + E NL VD + + EI K + +F N EFV
Sbjct: 213 VSMGNPHCVIFLERNIELGNLSSTGVDSASDLSMMKIDEIATKLQKLPLFKDGCNVEFVS 272
Query: 285 IISP---SQLKMRVWERXXXXXXXXXXXXXXXXXXXXLEGHA--ERRCTVDLPGGPLDIE 339
+ +++ RV+ER L + ++ TV +PGG L I+
Sbjct: 273 TNNSKLTNRVISRVFERGAGETLACGTGACGVAVASILMSYCTQDKEVTVSMPGGDLLIQ 332
Query: 340 WKEEDNHVYMTGPAEVVFYGSVLL 363
W E V+ TGPA VF ++ L
Sbjct: 333 WSSETGEVFKTGPACTVFNSNIKL 356
>TIGR_CMR|CJE_1702 [details] [associations]
symbol:CJE_1702 "diaminopimelate epimerase" species:195099
"Campylobacter jejuni RM1221" [GO:0008837 "diaminopimelate
epimerase activity" evidence=ISS] [GO:0009089 "lysine biosynthetic
process via diaminopimelate" evidence=ISS] HAMAP:MF_00197
InterPro:IPR001653 InterPro:IPR018510 Pfam:PF01678 PROSITE:PS01326
UniPathway:UPA00034 GO:GO:0005737 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0009089 eggNOG:COG0253
HOGENOM:HOG000220466 KO:K01778 GO:GO:0008837 TIGRFAMs:TIGR00652
ProtClustDB:PRK00450 RefSeq:YP_179680.1 ProteinModelPortal:Q5HSQ5
STRING:Q5HSQ5 GeneID:3232329 KEGG:cjr:CJE1702 PATRIC:20045202
OMA:VPHLVGF BioCyc:CJEJ195099:GJC0-1732-MONOMER Uniprot:Q5HSQ5
Length = 249
Score = 197 (74.4 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 47/121 (38%), Positives = 65/121 (53%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KY GNDF++ N + E R A +LC+R GIG DG I +P D+
Sbjct: 1 MKFYKYCASGNDFVIT-NADRKEDRSA--LAKELCNRYEGIGGDGFIVILPHEK-YDFEW 56
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
+N+DGS MCGNG R A F + +N SF TGAG+I ++ D KV+V +G
Sbjct: 57 EFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFL--TGAGIIKAKVNQD-KVEVSLG 113
Query: 199 E 199
+
Sbjct: 114 K 114
>DICTYBASE|DDB_G0270030 [details] [associations]
symbol:DDB_G0270030 species:44689 "Dictyostelium
discoideum" [GO:0009089 "lysine biosynthetic process via
diaminopimelate" evidence=IEA] [GO:0008837 "diaminopimelate
epimerase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] HAMAP:MF_00197 InterPro:IPR001653 InterPro:IPR018510
Pfam:PF01678 PROSITE:PS01326 dictyBase:DDB_G0270030 GO:GO:0005737
EMBL:AAFI02000005 GO:GO:0009089 eggNOG:COG0253 KO:K01778
GO:GO:0008837 TIGRFAMs:TIGR00652 ProtClustDB:CLSZ2429769
RefSeq:XP_646484.1 ProteinModelPortal:Q55CJ7
EnsemblProtists:DDB0190752 GeneID:8617446 KEGG:ddi:DDB_G0270030
InParanoid:Q55CJ7 OMA:CNENTEI Uniprot:Q55CJ7
Length = 355
Score = 156 (60.0 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 37/105 (35%), Positives = 55/105 (52%)
Query: 71 LDRRESGFLHFVKYHGLGNDFIL-----VDNRNSTEPRITPEQ----AAKLCDRNFGIGA 121
+D + S ++F K HG GNDF++ V+ N + +T E+ K+ R GIG
Sbjct: 5 IDNKPSFRINFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGF 64
Query: 122 DGVIFA--MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 164
D +I P Y M + N DG+ MCGNGVRCF+++I +
Sbjct: 65 DQLIVIDDNPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVD 109
Score = 100 (40.3 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 34/121 (28%), Positives = 53/121 (43%)
Query: 251 GQNLKVDKLNLAEIGPKFEHH-SVFPARTNTEFVEIISP-----SQLKMRVWERXXXXXX 304
G + K ++ EI + + + F N EFV I SP +++ RV ER
Sbjct: 237 GDHTKFSTIDFKEISDIIQSNVNGFDDIPNVEFV-IQSPQDKLENKVISRVVERGNGETL 295
Query: 305 XXXXXXXXXXXXXXLEGHAERRC--TVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
L+G+ TV++PGG L I+W +N ++ TGPA VF +L
Sbjct: 296 ACGTGACGVAISSILKGYCNENTEITVEMPGGKLLIQWNP-NNEIFKTGPATSVFKSQIL 354
Query: 363 L 363
+
Sbjct: 355 I 355
>DICTYBASE|DDB_G0270032 [details] [associations]
symbol:DDB_G0270032 species:44689 "Dictyostelium
discoideum" [GO:0009089 "lysine biosynthetic process via
diaminopimelate" evidence=IEA] [GO:0008837 "diaminopimelate
epimerase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] HAMAP:MF_00197 InterPro:IPR001653 InterPro:IPR018510
Pfam:PF01678 PROSITE:PS01326 dictyBase:DDB_G0270032 GO:GO:0005737
EMBL:AAFI02000005 GO:GO:0009089 eggNOG:COG0253 KO:K01778
GO:GO:0008837 TIGRFAMs:TIGR00652 ProtClustDB:CLSZ2429769
RefSeq:XP_646485.1 ProteinModelPortal:Q55CJ6
EnsemblProtists:DDB0190753 GeneID:8617447 KEGG:ddi:DDB_G0270032
InParanoid:Q55CJ6 OMA:KLGIGCD Uniprot:Q55CJ6
Length = 357
Score = 147 (56.8 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 35/97 (36%), Positives = 50/97 (51%)
Query: 79 LHFVKYHGLGNDFIL-----VDNRNSTEPRITPEQAA----KLCDRNFGIGADGVIFA-- 127
++F K G GNDF++ V+ N + +T E+ + KL R GIG D +I
Sbjct: 14 INFTKMQGAGNDFVVFEKNKVERLNGDQSIMTYEEISGFTKKLSHRKLGIGCDQLIIIDD 73
Query: 128 MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 164
P Y M + N DG+ MCGNGVRCF ++I +
Sbjct: 74 NPNDKNAAYGMGVINCDGNIENMCGNGVRCFTKYIID 110
Score = 103 (41.3 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 33/121 (27%), Positives = 52/121 (42%)
Query: 251 GQNLKVDKLNLAEIGPKFEHH-SVFPARTNTEFVEIISP-----SQLKMRVWERXXXXXX 304
G K +N+ EI + + + F N EFV I SP +++ RV ER
Sbjct: 238 GDFSKFSMINIQEISDIIQSNVNGFVDIANVEFV-IQSPQDKLENKVISRVVERGSGETL 296
Query: 305 XXXXXXXXXXXXXXLEGHAERRCT--VDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
L+G+ V++PGG L I+W ++ ++ TGPA VF +L
Sbjct: 297 ACGTGACGVAVASILKGYCNENTESIVEMPGGKLLIQWDSNNSEIFKTGPATTVFKSQIL 356
Query: 363 L 363
+
Sbjct: 357 I 357
>UNIPROTKB|P63897 [details] [associations]
symbol:dapF "Diaminopimelate epimerase" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0008837 "diaminopimelate epimerase activity"
evidence=IDA] [GO:0009089 "lysine biosynthetic process via
diaminopimelate" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_00197 InterPro:IPR001653 InterPro:IPR018510 Pfam:PF01678
PROSITE:PS01326 UniPathway:UPA00034 GO:GO:0005886 GO:GO:0005737
GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0009089
eggNOG:COG0253 KO:K01778 OMA:VPHAVIF GO:GO:0008837
TIGRFAMs:TIGR00652 ProtClustDB:PRK00450 PIR:E70505
RefSeq:NP_217242.1 RefSeq:NP_337301.1 RefSeq:YP_006516170.1
PDB:3FVE PDBsum:3FVE ProteinModelPortal:P63897 SMR:P63897
PRIDE:P63897 EnsemblBacteria:EBMYCT00000003327
EnsemblBacteria:EBMYCT00000072535 GeneID:13319453 GeneID:888614
GeneID:925494 KEGG:mtc:MT2798 KEGG:mtu:Rv2726c KEGG:mtv:RVBD_2726c
PATRIC:18127896 TubercuList:Rv2726c HOGENOM:HOG000220467
EvolutionaryTrace:P63897 Uniprot:P63897
Length = 289
Score = 181 (68.8 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 79/273 (28%), Positives = 114/273 (41%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIF-------------- 126
F K HG NDF+L+ + ++ E +T + A LCDR G+GADGV+
Sbjct: 3 FAKGHGTQNDFVLLPDVDA-ELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLD 61
Query: 127 AMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVP 185
++P GV TD+ M N+DGS +MCGNGVR FA ++ L + F V + AG P
Sbjct: 62 SLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYL-RASGLEVRDEFVVGSLAG---P 117
Query: 186 EIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPH--C 243
V ++A+ S+ K + E V G +++ V +GNPH C
Sbjct: 118 R-------PVTCHH--VEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNPHLAC 168
Query: 244 VTFG-TKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXX 302
V T +G + L++ P + FP N E + + MRV ER
Sbjct: 169 VDSQLTVDG----LAALDVG--APVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHERGVGE 222
Query: 303 XXX-XXXXXXXXXXXXXLEGHAERRCTVDLPGG 334
G TV +PGG
Sbjct: 223 TRSCGTGTVAAAVAALAAVGSPTGTLTVHVPGG 255
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 364 334 0.00091 116 3 11 22 0.42 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 611 (65 KB)
Total size of DFA: 234 KB (2128 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.28u 0.09s 26.37t Elapsed: 00:00:01
Total cpu time: 26.28u 0.09s 26.37t Elapsed: 00:00:01
Start: Fri May 10 05:41:15 2013 End: Fri May 10 05:41:16 2013