BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017920
(364 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225439868|ref|XP_002278566.1| PREDICTED: diaminopimelate epimerase, chloroplastic [Vitis
vinifera]
Length = 370
Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust.
Identities = 300/371 (80%), Positives = 326/371 (87%), Gaps = 9/371 (2%)
Query: 1 MAITTTRSLSVTP-----VTRRSATPINPLRSSSLSYSLTRPFGSNL---TLKVPSFRVS 52
MAI T SL +T VTRRS T +N SSS S S +P L + P+FRVS
Sbjct: 1 MAIAATISLPLTSPTRHSVTRRSITSLNVSPSSSSSSSSVQPSFLTLETVAFRNPNFRVS 60
Query: 53 ASSMSSIHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKL 112
A+SMS I A E S+TSFLDR+ESGFLHFVKYHGLGNDFILVDNR+S+EP++TPEQA KL
Sbjct: 61 ATSMS-IEALEKGSQTSFLDRKESGFLHFVKYHGLGNDFILVDNRDSSEPKLTPEQAVKL 119
Query: 113 CDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ 172
CDRNFGIGADGVIFAMPG+NGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENL+GKQ
Sbjct: 120 CDRNFGIGADGVIFAMPGINGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLHGKQ 179
Query: 173 SFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWN 232
SFT+HTGAGLIVPEIQDDGKVKVDMG+PILKA DVPT L ANKDQSVVKSEL+VDGV WN
Sbjct: 180 SFTLHTGAGLIVPEIQDDGKVKVDMGKPILKALDVPTKLPANKDQSVVKSELNVDGVSWN 239
Query: 233 VTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLK 292
VTCVSMGNPHCVTFGTK GQNL+VD+LNLA+IGPKFEHH++FPARTNTEFV++IS S LK
Sbjct: 240 VTCVSMGNPHCVTFGTKGGQNLQVDELNLADIGPKFEHHAMFPARTNTEFVQVISRSHLK 299
Query: 293 MRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGP 352
MRVWERGAGATLACGTGACAVVVAAVLEGHA R CTVDLPGGPLDIEW+EEDNHVYMTGP
Sbjct: 300 MRVWERGAGATLACGTGACAVVVAAVLEGHAGRSCTVDLPGGPLDIEWREEDNHVYMTGP 359
Query: 353 AEVVFYGSVLL 363
AE+VFYGSV L
Sbjct: 360 AEIVFYGSVPL 370
>gi|255584553|ref|XP_002533003.1| Diaminopimelate epimerase, putative [Ricinus communis]
gi|223527214|gb|EEF29378.1| Diaminopimelate epimerase, putative [Ricinus communis]
Length = 369
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 284/370 (76%), Positives = 311/370 (84%), Gaps = 10/370 (2%)
Query: 3 ITTTRSLSVTPVTRRSATPINPLRSSSLSYSLTRP-FGSN-----LTLKVPSFR---VSA 53
+ T S + TP TR T + RS LS S++ P F SN ++ K P+FR VSA
Sbjct: 1 MAATVSSAFTPSTRHHLTSVTRFRSLYLSNSISLPNFKSNSVKPLISSKNPNFRLLLVSA 60
Query: 54 SSMSSIHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLC 113
+SMS+ APE S SFLDRRESG HFVKY GLGNDFILVDNR+STEPRITPEQA +LC
Sbjct: 61 ASMSA-EAPEKISTASFLDRRESGIHHFVKYQGLGNDFILVDNRDSTEPRITPEQAVRLC 119
Query: 114 DRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQS 173
DRNFGIGADGVIFAMPG NGTDY+MRIFNSDGSEPEMCGNGVRCFARFIAELENL GKQS
Sbjct: 120 DRNFGIGADGVIFAMPGTNGTDYSMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKQS 179
Query: 174 FTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNV 233
FT+HTGAGLIVPEIQ+DGKVKVDMGEPILKASDVPT L NK +VVK++L++DGV WNV
Sbjct: 180 FTIHTGAGLIVPEIQEDGKVKVDMGEPILKASDVPTRLRENKGDAVVKAKLNIDGVTWNV 239
Query: 234 TCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKM 293
TCVSMGNPHCVTFG+ E Q+L+VDKLNLAEIGPKFEHH VFPARTNTEFV++ S S LKM
Sbjct: 240 TCVSMGNPHCVTFGSNENQDLQVDKLNLAEIGPKFEHHDVFPARTNTEFVQVHSHSHLKM 299
Query: 294 RVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPA 353
RVWERGAGATLACGTGACA VVAAVLEG A R CTVDLPGGPL+IEWKEEDNHVYMTGPA
Sbjct: 300 RVWERGAGATLACGTGACATVVAAVLEGRAGRNCTVDLPGGPLEIEWKEEDNHVYMTGPA 359
Query: 354 EVVFYGSVLL 363
E VFYG+V L
Sbjct: 360 EAVFYGAVAL 369
>gi|15231841|ref|NP_190926.1| diaminopimelate epimerase [Arabidopsis thaliana]
gi|75263858|sp|Q9LFG2.1|DAPF_ARATH RecName: Full=Diaminopimelate epimerase, chloroplastic; Short=DAP
epimerase; Flags: Precursor
gi|6729509|emb|CAB67665.1| diaminopimelate epimerase-like protein [Arabidopsis thaliana]
gi|22022530|gb|AAM83223.1| AT3g53580/F4P12_280 [Arabidopsis thaliana]
gi|23505901|gb|AAN28810.1| At3g53580/F4P12_280 [Arabidopsis thaliana]
gi|332645592|gb|AEE79113.1| diaminopimelate epimerase [Arabidopsis thaliana]
Length = 362
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 272/365 (74%), Positives = 302/365 (82%), Gaps = 5/365 (1%)
Query: 1 MAITTTRSLSVTPVTRR--SATPINPLRSSSLSYSLTRPFGSNLTLKVPSFRVSASSMSS 58
M I ++SV P +RR +A N SSLS+ F K PS RVSA++
Sbjct: 1 MEIAAVSTVSVAPQSRRVSNAFSRNLGSVSSLSFGF---FEKEYCFKSPSLRVSAAASMD 57
Query: 59 IHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFG 118
E S SFLD++E+G LHFVKYHGLGNDFILVDNR+S+EP+IT EQAAKLCDRNFG
Sbjct: 58 AVTAEKFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFG 117
Query: 119 IGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 178
+GADGVIFAMPGVNGTDY MRIFNSDGSEPEMCGNGVRCFARFIAELENL GK SFT+HT
Sbjct: 118 VGADGVIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHT 177
Query: 179 GAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSM 238
GAGLIVPEIQDDG+VKVDMG PILKA DVPT LS NK ++VV++EL VDGV WNVTCVSM
Sbjct: 178 GAGLIVPEIQDDGQVKVDMGTPILKAQDVPTKLSGNKGEAVVEAELVVDGVSWNVTCVSM 237
Query: 239 GNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWER 298
GNPHC+TFG K G NLKVD LNL EIGPKFEHH +FPARTNTEFVE++S S LKMRVWER
Sbjct: 238 GNPHCITFGKKGGPNLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWER 297
Query: 299 GAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFY 358
GAGATLACGTGACA+VVAAVLEG A+R+CTVDLPGGPL+IEWK+EDNH+YMTGPAE VFY
Sbjct: 298 GAGATLACGTGACALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFY 357
Query: 359 GSVLL 363
GS LL
Sbjct: 358 GSALL 362
>gi|297741545|emb|CBI32677.3| unnamed protein product [Vitis vinifera]
Length = 307
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 271/306 (88%), Positives = 291/306 (95%)
Query: 58 SIHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNF 117
SI A E S+TSFLDR+ESGFLHFVKYHGLGNDFILVDNR+S+EP++TPEQA KLCDRNF
Sbjct: 2 SIEALEKGSQTSFLDRKESGFLHFVKYHGLGNDFILVDNRDSSEPKLTPEQAVKLCDRNF 61
Query: 118 GIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVH 177
GIGADGVIFAMPG+NGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENL+GKQSFT+H
Sbjct: 62 GIGADGVIFAMPGINGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLHGKQSFTLH 121
Query: 178 TGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVS 237
TGAGLIVPEIQDDGKVKVDMG+PILKA DVPT L ANKDQSVVKSEL+VDGV WNVTCVS
Sbjct: 122 TGAGLIVPEIQDDGKVKVDMGKPILKALDVPTKLPANKDQSVVKSELNVDGVSWNVTCVS 181
Query: 238 MGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWE 297
MGNPHCVTFGTK GQNL+VD+LNLA+IGPKFEHH++FPARTNTEFV++IS S LKMRVWE
Sbjct: 182 MGNPHCVTFGTKGGQNLQVDELNLADIGPKFEHHAMFPARTNTEFVQVISRSHLKMRVWE 241
Query: 298 RGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVF 357
RGAGATLACGTGACAVVVAAVLEGHA R CTVDLPGGPLDIEW+EEDNHVYMTGPAE+VF
Sbjct: 242 RGAGATLACGTGACAVVVAAVLEGHAGRSCTVDLPGGPLDIEWREEDNHVYMTGPAEIVF 301
Query: 358 YGSVLL 363
YGSV L
Sbjct: 302 YGSVPL 307
>gi|297816660|ref|XP_002876213.1| diaminopimelate epimerase family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297322051|gb|EFH52472.1| diaminopimelate epimerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 362
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 269/365 (73%), Positives = 299/365 (81%), Gaps = 5/365 (1%)
Query: 1 MAITTTRSLSVTPVTRRSATPIN-PLRS-SSLSYSLTRPFGSNLTLKVPSFRVSASSMSS 58
M I S+SV P +R+ + L S SSLS+ F K PS RVSA++
Sbjct: 1 MEIAAASSVSVAPQSRQLLNVFSRKLGSVSSLSFGF---FEKEYCFKSPSLRVSAAASMD 57
Query: 59 IHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFG 118
E S SFLD++E+G LHFVKYHGLGNDFILVDNR+S+EP+IT EQAAKLCDRNFG
Sbjct: 58 AVIAEKFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFG 117
Query: 119 IGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 178
+GADGVIFAMPGVNGTDY MRIFNSDGSEPEMCGNGVRCFARFIAELENL GK SFT+HT
Sbjct: 118 VGADGVIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHT 177
Query: 179 GAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSM 238
GAGLIVPEIQDDG+VKVDMG PILKA DVPT L NK ++VV++EL VDG WNVTCVSM
Sbjct: 178 GAGLIVPEIQDDGQVKVDMGTPILKAQDVPTKLPGNKGEAVVQAELVVDGESWNVTCVSM 237
Query: 239 GNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWER 298
GNPHC+TFG K G NLKVD LNL EIGPKFE H +FPARTNTEFVE++S S LKMRVWER
Sbjct: 238 GNPHCITFGKKGGPNLKVDDLNLPEIGPKFERHEMFPARTNTEFVEVLSHSHLKMRVWER 297
Query: 299 GAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFY 358
GAGATLACGTGACA+VVAAVLEG A+R+CTVDLPGGPL+IEWK+EDNH+YMTGPAE VFY
Sbjct: 298 GAGATLACGTGACALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFY 357
Query: 359 GSVLL 363
GS LL
Sbjct: 358 GSALL 362
>gi|223673992|pdb|3EJX|A Chain A, Crystal Structure Of Diaminopimelate Epimerase From
Arabidopsis Thaliana In Complex With Ll-Azidap
gi|223673993|pdb|3EJX|B Chain B, Crystal Structure Of Diaminopimelate Epimerase From
Arabidopsis Thaliana In Complex With Ll-Azidap
gi|223673994|pdb|3EJX|C Chain C, Crystal Structure Of Diaminopimelate Epimerase From
Arabidopsis Thaliana In Complex With Ll-Azidap
gi|223673995|pdb|3EJX|D Chain D, Crystal Structure Of Diaminopimelate Epimerase From
Arabidopsis Thaliana In Complex With Ll-Azidap
gi|223673996|pdb|3EJX|E Chain E, Crystal Structure Of Diaminopimelate Epimerase From
Arabidopsis Thaliana In Complex With Ll-Azidap
gi|223673997|pdb|3EJX|F Chain F, Crystal Structure Of Diaminopimelate Epimerase From
Arabidopsis Thaliana In Complex With Ll-Azidap
gi|223674010|pdb|3EKM|A Chain A, Crystal Structure Of Diaminopimelate Epimerase Form
Arabidopsis Thaliana In Complex With Irreversible
Inhibitor Dl-Azidap
gi|223674011|pdb|3EKM|B Chain B, Crystal Structure Of Diaminopimelate Epimerase Form
Arabidopsis Thaliana In Complex With Irreversible
Inhibitor Dl-Azidap
gi|223674012|pdb|3EKM|C Chain C, Crystal Structure Of Diaminopimelate Epimerase Form
Arabidopsis Thaliana In Complex With Irreversible
Inhibitor Dl-Azidap
gi|223674013|pdb|3EKM|D Chain D, Crystal Structure Of Diaminopimelate Epimerase Form
Arabidopsis Thaliana In Complex With Irreversible
Inhibitor Dl-Azidap
gi|223674014|pdb|3EKM|E Chain E, Crystal Structure Of Diaminopimelate Epimerase Form
Arabidopsis Thaliana In Complex With Irreversible
Inhibitor Dl-Azidap
gi|223674015|pdb|3EKM|F Chain F, Crystal Structure Of Diaminopimelate Epimerase Form
Arabidopsis Thaliana In Complex With Irreversible
Inhibitor Dl-Azidap
Length = 317
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 255/312 (81%), Positives = 282/312 (90%), Gaps = 1/312 (0%)
Query: 52 SASSMSSIHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAK 111
+A+SM ++ A E S SFLD++E+G LHFVKYHGLGNDFILVDNR+S+EP+IT EQAAK
Sbjct: 1 AAASMDAVTA-EKFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAK 59
Query: 112 LCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGK 171
LCDRNFG+GADGVIFAMPGVNGTDY MRIFNSDGSEPEMCGNGVRCFARFIAELENL GK
Sbjct: 60 LCDRNFGVGADGVIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGK 119
Query: 172 QSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKW 231
SFT+HTGAGLIVPEIQDDG+VKVDMG PILKA DVPT LS NK ++VV++EL VDGV W
Sbjct: 120 HSFTIHTGAGLIVPEIQDDGQVKVDMGTPILKAQDVPTKLSGNKGEAVVEAELVVDGVSW 179
Query: 232 NVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQL 291
NVTCVSMGNPHC+TFG K G NLKVD LNL EIGPKFEHH +FPARTNTEFVE++S S L
Sbjct: 180 NVTCVSMGNPHCITFGKKGGPNLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHL 239
Query: 292 KMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTG 351
KMRVWERGAGATLACGTGACA+VVAAVLEG A+R+CTVDLPGGPL+IEWK+EDNH+YMTG
Sbjct: 240 KMRVWERGAGATLACGTGACALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTG 299
Query: 352 PAEVVFYGSVLL 363
PAE VFYGS LL
Sbjct: 300 PAEAVFYGSALL 311
>gi|449448669|ref|XP_004142088.1| PREDICTED: diaminopimelate epimerase, chloroplastic-like [Cucumis
sativus]
Length = 364
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 277/374 (74%), Positives = 303/374 (81%), Gaps = 20/374 (5%)
Query: 1 MAITTTRSLSVTPVTRRSATPINPLRSSSLSYSLTRPFGSNLTL----------KVPSFR 50
MA+ T SL +T + RS I LR S F S+L L + P
Sbjct: 1 MAVATIISLPLTSPSSRSLASIPSLRLS---------FTSSLQLDSLPKYSARGRSPRLS 51
Query: 51 VSASSMSSIHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAA 110
VSA+S + + E A SFLDRRESG LHFVKYHGLGNDFILVDNR+S+EPRITPEQAA
Sbjct: 52 VSATS-AGLEVTEKAPSFSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAA 110
Query: 111 KLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNG 170
KLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENL G
Sbjct: 111 KLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQG 170
Query: 171 KQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVK 230
+ SFTVHTGAGLI+PE+QDDG+VKVDMGEPILKA+DVPT L+ KDQSVVK+ ++VDGV
Sbjct: 171 RHSFTVHTGAGLIIPELQDDGQVKVDMGEPILKATDVPTRLTPTKDQSVVKAAIEVDGVA 230
Query: 231 WNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQ 290
W+VTCVSMGNPHCVTF K QNL+VD +NLA IGPKFEHH +FPARTNTEFV+++S S
Sbjct: 231 WSVTCVSMGNPHCVTFSNKIEQNLQVDGINLAAIGPKFEHHEMFPARTNTEFVQVLSNSH 290
Query: 291 LKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMT 350
LKMRVWERGAGATLACGTGACAVVVAAVLEG A R CTVDLPGGPL IEW EEDNHVYMT
Sbjct: 291 LKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRNCTVDLPGGPLQIEWSEEDNHVYMT 350
Query: 351 GPAEVVFYGSVLLN 364
GPAEVVFYGSV L
Sbjct: 351 GPAEVVFYGSVPLQ 364
>gi|224087786|ref|XP_002308231.1| predicted protein [Populus trichocarpa]
gi|222854207|gb|EEE91754.1| predicted protein [Populus trichocarpa]
Length = 314
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 256/313 (81%), Positives = 285/313 (91%), Gaps = 4/313 (1%)
Query: 55 SMSSIHAPE--SASRTSFLDRRE-SGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAK 111
S+ S AP+ S+ +SFLD +E S FLHFVKYHGLGNDFI++DNR+S+EP+I PEQA K
Sbjct: 2 SIDSAAAPQETSSKSSSFLDHKEGSRFLHFVKYHGLGNDFIVLDNRDSSEPKIRPEQAVK 61
Query: 112 LCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGK 171
LCDRNFGIGADGVIFA+PGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELEN +GK
Sbjct: 62 LCDRNFGIGADGVIFALPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENFHGK 121
Query: 172 -QSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVK 230
QSFTVHTGAGLIVPEIQ+DG+VKVDMGEP+LKA++VPT L++NK+ +VVKSEL VDGV
Sbjct: 122 RQSFTVHTGAGLIVPEIQEDGQVKVDMGEPVLKAANVPTKLASNKNDAVVKSELVVDGVT 181
Query: 231 WNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQ 290
WNVTCVSMGNPHCVTFGTK G++L+VD LNLA+IGPKFEHH VFPARTNTEFV++ SPS
Sbjct: 182 WNVTCVSMGNPHCVTFGTKGGEDLQVDALNLAQIGPKFEHHDVFPARTNTEFVQVYSPSH 241
Query: 291 LKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMT 350
LKMRVWERGAGATLACGTGACA VVAAVLEG A R CTVDLPGGPL+IEW+EEDNHVYMT
Sbjct: 242 LKMRVWERGAGATLACGTGACATVVAAVLEGRAGRNCTVDLPGGPLEIEWREEDNHVYMT 301
Query: 351 GPAEVVFYGSVLL 363
GPAEVVFYGSV L
Sbjct: 302 GPAEVVFYGSVRL 314
>gi|358248766|ref|NP_001240192.1| diaminopimelate epimerase, chloroplastic-like [Glycine max]
gi|255636095|gb|ACU18392.1| unknown [Glycine max]
Length = 359
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 254/363 (69%), Positives = 301/363 (82%), Gaps = 4/363 (1%)
Query: 1 MAITTTRSLSVTPVTRRSATPINPLRSSSLSYSLTRPFGSNLTLKVPSFRVSASSMSSIH 60
MAIT T S+ T +RR+ +N L S +L P T K P+ R+ SSMS+
Sbjct: 1 MAITATISVPFTSPSRRTLASVNSLSPRSTRSTLPTP---QRTFKYPNSRLVVSSMSTET 57
Query: 61 APESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIG 120
A +++S SFL+R+ESGFLHF KYHGLGNDF+L+DNR+S+EP+I+ E+A +LCDRNFG+G
Sbjct: 58 AVKTSS-ASFLNRKESGFLHFAKYHGLGNDFVLIDNRDSSEPKISAEKAVQLCDRNFGVG 116
Query: 121 ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGA 180
ADGVIF +PG++GTDYTMRIFNSDGSEPEMCGNGVRCFA+F+++LENL+G+ SFT+HTGA
Sbjct: 117 ADGVIFVLPGISGTDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGA 176
Query: 181 GLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGN 240
GLI+PE+ +DG V+VDMGEPILKASDVPT L ANKD +VVKSEL VDGV W+VTCVSMGN
Sbjct: 177 GLIIPEVLEDGNVRVDMGEPILKASDVPTKLHANKDNAVVKSELVVDGVIWHVTCVSMGN 236
Query: 241 PHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGA 300
PHCVTF + QNL VD+L LAEIGPKFEHH VFPARTNTEFV+++S S LKM VWERGA
Sbjct: 237 PHCVTFSREGSQNLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMCVWERGA 296
Query: 301 GATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
GATLACGTGACA VVAAVLEG A R CTVDLPGGPL IEW+EEDNHVYMTG A+VV+YGS
Sbjct: 297 GATLACGTGACATVVAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGS 356
Query: 361 VLL 363
+ L
Sbjct: 357 LPL 359
>gi|356572353|ref|XP_003554333.1| PREDICTED: diaminopimelate epimerase, chloroplastic-like [Glycine
max]
Length = 359
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 253/363 (69%), Positives = 301/363 (82%), Gaps = 4/363 (1%)
Query: 1 MAITTTRSLSVTPVTRRSATPINPLRSSSLSYSLTRPFGSNLTLKVPSFRVSASSMSSIH 60
MAI T S+ +T TRR+ +N L S +L P T K P+ R+ ASSMS+
Sbjct: 1 MAIAATISVPLTSPTRRTLASVNSLSPHSPRSTLPTP---QRTFKYPNSRLVASSMSTET 57
Query: 61 APESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIG 120
A +++S SFL+ +ESGFLHF KYHGLGNDF+L+DNR+++EPRI+ E+A +LCDRNFG+G
Sbjct: 58 AVKTSS-ASFLNLKESGFLHFAKYHGLGNDFVLIDNRDTSEPRISAEKAVQLCDRNFGVG 116
Query: 121 ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGA 180
ADGVIF +PG+NGTDYTMRIFNSDGSEPEMCGNGVRCFA+F+++LENL+G+ SFT+HTGA
Sbjct: 117 ADGVIFVLPGINGTDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGA 176
Query: 181 GLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGN 240
GLI+PE+ +DG V+VDMGEP+LKA DVPT L ANKD +VVKS+L VDGV W+VTCVSMGN
Sbjct: 177 GLIIPEVLEDGNVRVDMGEPVLKALDVPTKLPANKDNAVVKSQLVVDGVIWHVTCVSMGN 236
Query: 241 PHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGA 300
PHCVTF + QNL VD+L LAEIGPKFEHH VFPARTNTEFV+++S S LKMRVWERGA
Sbjct: 237 PHCVTFSREGSQNLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMRVWERGA 296
Query: 301 GATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
GATLACGTGACA VVAAVLEG A R CTVDLPGGPL IEW+EEDNHVYMTG A+VV+YGS
Sbjct: 297 GATLACGTGACATVVAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGS 356
Query: 361 VLL 363
+ L
Sbjct: 357 LPL 359
>gi|255671799|gb|ACU26532.1| diaminopimelate epimerase [Glycine max]
Length = 359
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 252/363 (69%), Positives = 299/363 (82%), Gaps = 4/363 (1%)
Query: 1 MAITTTRSLSVTPVTRRSATPINPLRSSSLSYSLTRPFGSNLTLKVPSFRVSASSMSSIH 60
MAIT T S+ T +RR+ +N L S +L P T K P+ R+ SSMS+
Sbjct: 1 MAITATISVPFTSPSRRTLASVNSLSPRSTRSTLPTP---QRTFKYPNSRLVVSSMSTET 57
Query: 61 APESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIG 120
A +++S SFL+R+ESGFLHF KYHGLGNDF+L+DNR+S+EP+I+ E+A +LCDRNFG+G
Sbjct: 58 AVKTSS-ASFLNRKESGFLHFAKYHGLGNDFVLIDNRDSSEPKISAEKAVQLCDRNFGVG 116
Query: 121 ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGA 180
ADGVIF +PG++GTDYTMRIFNSDGSEPEMCGNGVRCFA+F+++LENL+G+ SFT+HTGA
Sbjct: 117 ADGVIFVLPGISGTDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGA 176
Query: 181 GLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGN 240
GLI+PE+ +DG V+VDMGEPILK DVPT L ANKD +VVKSEL VDGV W+VTCVSMGN
Sbjct: 177 GLIIPEVLEDGNVRVDMGEPILKXXDVPTKLHANKDNAVVKSELVVDGVIWHVTCVSMGN 236
Query: 241 PHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGA 300
PHCVTF + QNL VD+L LAEIGPKFEHH VFPARTNTEFV+++S S LKM VWERGA
Sbjct: 237 PHCVTFSREGSQNLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMCVWERGA 296
Query: 301 GATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
GATLACGTGACA VVAAVLEG A R CTVDLPGGPL IEW+EEDNHVYMTG A+VV+YGS
Sbjct: 297 GATLACGTGACATVVAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGS 356
Query: 361 VLL 363
+ L
Sbjct: 357 LPL 359
>gi|255645761|gb|ACU23373.1| unknown [Glycine max]
Length = 359
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 251/363 (69%), Positives = 299/363 (82%), Gaps = 4/363 (1%)
Query: 1 MAITTTRSLSVTPVTRRSATPINPLRSSSLSYSLTRPFGSNLTLKVPSFRVSASSMSSIH 60
MAI T S+ +T TRR+ +N L S +L P T K P+ R+ ASSMS+
Sbjct: 1 MAIAATISVPLTSPTRRTLASVNSLSPHSPRSTLPTP---QRTFKYPNSRLVASSMSTET 57
Query: 61 APESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIG 120
A +++S SFL+ +ESGFLHF KYHGLGNDF+L+DNR+++EPRI+ E+A +LCDRNFG+G
Sbjct: 58 AVKTSS-ASFLNLKESGFLHFAKYHGLGNDFVLIDNRDTSEPRISAEKAVQLCDRNFGVG 116
Query: 121 ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGA 180
ADGVIF +PG+NGTDYTMRIFNSD SEPEMCGNGVRCFA+F+++LENL+G+ SFT+HTGA
Sbjct: 117 ADGVIFVLPGINGTDYTMRIFNSDSSEPEMCGNGVRCFAKFVSQLENLHGRHSFTIHTGA 176
Query: 181 GLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGN 240
GLI+PE+ +DG V+VDMGEP+LKA DVPT L ANKD +VVKS+L VDGV W+VTCVSMGN
Sbjct: 177 GLIIPEVLEDGNVRVDMGEPVLKALDVPTKLPANKDNAVVKSQLVVDGVIWHVTCVSMGN 236
Query: 241 PHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGA 300
PHCVTF + QNL VD+L LAEIGPKFEHH VFPARTNTEFV+++S S LKMRVWERGA
Sbjct: 237 PHCVTFSREGSQNLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMRVWERGA 296
Query: 301 GATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
GATLACGTGACA V AAVLEG A R CTVDLPGGPL IEW+EEDNHVYMTG A+VV+YGS
Sbjct: 297 GATLACGTGACATVAAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGS 356
Query: 361 VLL 363
+ L
Sbjct: 357 LPL 359
>gi|357160583|ref|XP_003578811.1| PREDICTED: diaminopimelate epimerase, chloroplastic-like
[Brachypodium distachyon]
Length = 355
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 243/338 (71%), Positives = 289/338 (85%), Gaps = 6/338 (1%)
Query: 27 SSSLSYSLTRPFGSNLTLK-VPSFRVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKY 84
+S+ S RP NL+L+ P+ R + +SM+ + AP+S + SFL+RRES +HFVKY
Sbjct: 21 ASTAPSSRVRP---NLSLRGTPAPRRAVASMA-VSAPKSPAAASFLERRESERAIHFVKY 76
Query: 85 HGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSD 144
GLGNDFI+VDNR+S+ P++TPE+AAKLCDRNFGIGADGVIF MPGVNG DYTMRIFNSD
Sbjct: 77 QGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVNGADYTMRIFNSD 136
Query: 145 GSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKA 204
GSEPEMCGNGVRCFARFIAELENL G SF +HTGAGLI+PEIQ+DGKVKVDMG+PIL
Sbjct: 137 GSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPILNG 196
Query: 205 SDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEI 264
DVPT L + K+++VV++EL +DG+ W+VTCVSMGNPHCVTFG KE + L VD L L++I
Sbjct: 197 PDVPTKLPSTKNEAVVQAELAIDGLVWHVTCVSMGNPHCVTFGAKELKVLHVDDLKLSDI 256
Query: 265 GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAE 324
GPKFEHH +FPARTNTEFV+++S S LKMRVWERGAGATLACGTGACAVVVAA+LEG AE
Sbjct: 257 GPKFEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVVVAAILEGRAE 316
Query: 325 RRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
R+C VDLPGGPL+IEW+E++NHVYMTGPAE VFYGSV+
Sbjct: 317 RKCVVDLPGGPLEIEWREDNNHVYMTGPAEAVFYGSVV 354
>gi|388494806|gb|AFK35469.1| unknown [Lotus japonicus]
Length = 358
Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust.
Identities = 250/365 (68%), Positives = 296/365 (81%), Gaps = 9/365 (2%)
Query: 1 MAITTTRSLSVTPVTRRSATPINPLRSSSLSYSLTRPFGSNLTLKVPSFRVSASSMSSIH 60
MAIT T S+ V+ RS +N RSSS S P T + R+ ASSMS+
Sbjct: 1 MAITATISVPVSTPIHRSLPAVNLFRSSS---SFAPP---QRTFNYLNSRLVASSMST-E 53
Query: 61 AP--ESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFG 118
AP ++S + SGFLHF KYHGLGNDF+L+DNR+S+EP+I+ E+A ++CDRNFG
Sbjct: 54 APVKTTSSSAASSLNSGSGFLHFAKYHGLGNDFVLIDNRDSSEPKISSEKAVQICDRNFG 113
Query: 119 IGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 178
+GADGVIF +PG+NGTDYTMRIFNSDGSEPEMCGNGVRCFA+FI+++EN++G+ SFT+HT
Sbjct: 114 VGADGVIFLLPGINGTDYTMRIFNSDGSEPEMCGNGVRCFAKFISQVENIHGRHSFTIHT 173
Query: 179 GAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSM 238
GAGLIVPE+ +DG V+VDMGEP+LKASDVPT L ANKD +VVKSELDVDGV WNVTCVSM
Sbjct: 174 GAGLIVPEVLEDGNVRVDMGEPVLKASDVPTKLPANKDGAVVKSELDVDGVIWNVTCVSM 233
Query: 239 GNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWER 298
GNPHC+TF K Q+L VD+L LAEIGPKFEHH +FPARTNTEFV+++ S LKMRVWER
Sbjct: 234 GNPHCITFSRKGSQSLLVDELKLAEIGPKFEHHEMFPARTNTEFVQVLFNSHLKMRVWER 293
Query: 299 GAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFY 358
GAGATLACGTGACA+VVAAVLEGH R CTVDLPGGPL IEW+EEDNHVYMTG A+VV+Y
Sbjct: 294 GAGATLACGTGACALVVAAVLEGHTGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYY 353
Query: 359 GSVLL 363
GS+ L
Sbjct: 354 GSLPL 358
>gi|224139194|ref|XP_002323003.1| predicted protein [Populus trichocarpa]
gi|222867633|gb|EEF04764.1| predicted protein [Populus trichocarpa]
Length = 281
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/286 (84%), Positives = 267/286 (93%), Gaps = 6/286 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
LHFVKYHGLGNDFILVDNR+S+EP+ITPEQAAKLCDRNFGIGADGVIFA+PG+NGTDYTM
Sbjct: 1 LHFVKYHGLGNDFILVDNRDSSEPKITPEQAAKLCDRNFGIGADGVIFALPGINGTDYTM 60
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ-SFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNGVRCFARFIAE+ENL+GK+ SF+VHTGAGLIVPEIQ+DGKVKVDM
Sbjct: 61 RIFNSDGSEPEMCGNGVRCFARFIAEIENLHGKKLSFSVHTGAGLIVPEIQEDGKVKVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP+LKA+DVPT L+ANK+ +VVKSEL VDGV WNVTCVSMGNPHCVTFG +L+VD
Sbjct: 121 GEPVLKAADVPTKLAANKNDAVVKSELVVDGVTWNVTCVSMGNPHCVTFG-----DLQVD 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
LNLA+IGPKFEHH VFPARTNTEFV++ SPS LKMRVWERGAGATLACGTGACA VVAA
Sbjct: 176 SLNLAQIGPKFEHHEVFPARTNTEFVQVCSPSHLKMRVWERGAGATLACGTGACATVVAA 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VLEG+A R CTVDLPGGPL+IEW+EEDNHVYMTGPAE+VF GSV L
Sbjct: 236 VLEGNAGRNCTVDLPGGPLEIEWREEDNHVYMTGPAEMVFDGSVPL 281
>gi|226505860|ref|NP_001141344.1| uncharacterized protein LOC100273435 [Zea mays]
gi|194704094|gb|ACF86131.1| unknown [Zea mays]
gi|223948299|gb|ACN28233.1| unknown [Zea mays]
gi|414878077|tpg|DAA55208.1| TPA: hypothetical protein ZEAMMB73_842737 [Zea mays]
Length = 353
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 239/318 (75%), Positives = 275/318 (86%), Gaps = 1/318 (0%)
Query: 46 VPSFRVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGLGNDFILVDNRNSTEPRI 104
VP+ A + ++ AP S + TSFL+RRES LHFVKY GLGNDFI+VDNR+S+ P++
Sbjct: 35 VPAAPRRAVASMAVSAPRSGAATSFLERRESERALHFVKYQGLGNDFIMVDNRDSSVPKV 94
Query: 105 TPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 164
TPE+AAKLCDRNFGIGADGVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFARFIAE
Sbjct: 95 TPEEAAKLCDRNFGIGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIAE 154
Query: 165 LENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSEL 224
+ENL G FT+HTGAG IVPEIQ DG+VKVDMGEPIL D+PT L A K+++VV++EL
Sbjct: 155 IENLQGTNRFTIHTGAGKIVPEIQSDGQVKVDMGEPILSGLDIPTKLLATKNKAVVQAEL 214
Query: 225 DVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVE 284
V+G+ W+VTCVSMGNPHCVTFG E + L+VD L L+EIGPKFEHH +FPARTNTEFV+
Sbjct: 215 AVEGLTWHVTCVSMGNPHCVTFGANELKVLQVDDLKLSEIGPKFEHHEMFPARTNTEFVQ 274
Query: 285 IISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEED 344
++S S LKMRVWERGAGATLACGTGACAVVVAAVLEG AER+C VDLPGGPL+IEW+E+D
Sbjct: 275 VLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWREDD 334
Query: 345 NHVYMTGPAEVVFYGSVL 362
NHVYMTGPAEVVFYGSV+
Sbjct: 335 NHVYMTGPAEVVFYGSVV 352
>gi|212276289|ref|NP_001130140.1| uncharacterized protein LOC100191234 [Zea mays]
gi|194688384|gb|ACF78276.1| unknown [Zea mays]
gi|195608480|gb|ACG26070.1| diaminopimelate epimerase [Zea mays]
gi|219888355|gb|ACL54552.1| unknown [Zea mays]
Length = 352
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 239/335 (71%), Positives = 281/335 (83%), Gaps = 6/335 (1%)
Query: 33 SLTRPFGSNLTLKVPSF----RVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGL 87
+LT PF + L + R + +SM+ + AP S + SFL+RRES LHFVKY GL
Sbjct: 18 NLTTPFRGRVRLPLRGVSAAPRRAVASMA-VSAPRSGAAASFLERRESERALHFVKYQGL 76
Query: 88 GNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSE 147
GNDFI+VDNR+S+ P++TPE+AAKLCDRNFGIGADGVIF MPGVN DYTMRIFNSDGSE
Sbjct: 77 GNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVNDADYTMRIFNSDGSE 136
Query: 148 PEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDV 207
PEMCGNGVRCFARFI ELENL G SFT+HTGAG I+PEIQ DG+VKVDMGEPIL +D+
Sbjct: 137 PEMCGNGVRCFARFIGELENLQGTHSFTIHTGAGKIIPEIQSDGQVKVDMGEPILSGADI 196
Query: 208 PTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPK 267
PT L A K+++V+++EL V+G+ W+VTCVSMGNPHCVTFG E + L++D L L+EIGPK
Sbjct: 197 PTKLVATKNKAVIQAELAVEGLTWHVTCVSMGNPHCVTFGANELKTLQIDDLKLSEIGPK 256
Query: 268 FEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRC 327
FEHH +FPARTNTEFV+++S S LKMRVWERGAGATLACGTGACAVVVAAVLEG AER+C
Sbjct: 257 FEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKC 316
Query: 328 TVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VDLPGGPL+IEW+E+DNHVYMTGPAE VFYGSV+
Sbjct: 317 VVDLPGGPLEIEWREDDNHVYMTGPAEAVFYGSVV 351
>gi|238009464|gb|ACR35767.1| unknown [Zea mays]
Length = 350
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 240/318 (75%), Positives = 274/318 (86%), Gaps = 4/318 (1%)
Query: 46 VPSFRVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGLGNDFILVDNRNSTEPRI 104
VP+ A + ++ AP S + TSFL+RRES LHFVKY GLGNDFI+VDNR+S+ P++
Sbjct: 35 VPAAPRRAVASMAVSAPRSGAATSFLERRESERALHFVKYQGLGNDFIMVDNRDSSVPKV 94
Query: 105 TPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 164
TPE+AAKLCDRNFGIGADGVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFARFIAE
Sbjct: 95 TPEEAAKLCDRNFGIGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIAE 154
Query: 165 LENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSEL 224
+ENL G FT+HTGAG IVPEIQ DG+VKVDMGEPIL D+PT L A K+++VV++EL
Sbjct: 155 IENLQGTNRFTIHTGAGKIVPEIQSDGQVKVDMGEPILSGLDIPTKLLATKNKAVVQAEL 214
Query: 225 DVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVE 284
V+G+ W+VTCVSMGNPHCVTFG E LKVD L L+EIGPKFEHH +FPARTNTEFV+
Sbjct: 215 AVEGLTWHVTCVSMGNPHCVTFGANE---LKVDDLKLSEIGPKFEHHEMFPARTNTEFVQ 271
Query: 285 IISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEED 344
++S S LKMRVWERGAGATLACGTGACAVVVAAVLEG AER+C VDLPGGPL+IEW+E+D
Sbjct: 272 VLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWREDD 331
Query: 345 NHVYMTGPAEVVFYGSVL 362
NHVYMTGPAEVVFYGSV+
Sbjct: 332 NHVYMTGPAEVVFYGSVV 349
>gi|414868498|tpg|DAA47055.1| TPA: diaminopimelate epimerase isoform 1 [Zea mays]
gi|414868499|tpg|DAA47056.1| TPA: diaminopimelate epimerase isoform 2 [Zea mays]
gi|414868500|tpg|DAA47057.1| TPA: diaminopimelate epimerase isoform 3 [Zea mays]
Length = 352
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/335 (71%), Positives = 280/335 (83%), Gaps = 6/335 (1%)
Query: 33 SLTRPFGSNLTLKVPSF----RVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGL 87
+LT PF + L + R + +SM+ + AP S + SFL+RRES LHFVKY GL
Sbjct: 18 NLTTPFRGRVRLPLRGVSAAPRRAVASMA-VSAPRSGAAASFLERRESERALHFVKYQGL 76
Query: 88 GNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSE 147
GNDFI+VDNR+S+ P++TPE+AAKLCDRNFGIGADGVIF MPGVN DYTMRIFNSDGSE
Sbjct: 77 GNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVNDADYTMRIFNSDGSE 136
Query: 148 PEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDV 207
PEMCGNGVRCFARFI ELENL G SFT+HTGAG I+PEIQ DG+VKVDMGEPIL +D+
Sbjct: 137 PEMCGNGVRCFARFIGELENLQGTHSFTIHTGAGKIIPEIQSDGQVKVDMGEPILSGADI 196
Query: 208 PTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPK 267
PT L A K+++V+++EL V+G+ W+VTCVSMGNPHCVTFG E + L++D L L+EIGPK
Sbjct: 197 PTKLVATKNKAVIQAELAVEGLTWHVTCVSMGNPHCVTFGANELKTLQIDDLKLSEIGPK 256
Query: 268 FEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRC 327
FEHH +FPARTNTEFV+++S S LKMRVWERGAGATL CGTGACAVVVAAVLEG AER+C
Sbjct: 257 FEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLTCGTGACAVVVAAVLEGRAERKC 316
Query: 328 TVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VDLPGGPL+IEW+E+DNHVYMTGPAE VFYGSV+
Sbjct: 317 VVDLPGGPLEIEWREDDNHVYMTGPAEAVFYGSVV 351
>gi|122203466|sp|Q2QNF7.1|DAPF_ORYSJ RecName: Full=Diaminopimelate epimerase, chloroplastic; Short=DAP
epimerase; Flags: Precursor
gi|77556798|gb|ABA99594.1| Diaminopimelate epimerase, putative, expressed [Oryza sativa
Japonica Group]
gi|125579760|gb|EAZ20906.1| hypothetical protein OsJ_36545 [Oryza sativa Japonica Group]
Length = 354
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/323 (73%), Positives = 277/323 (85%), Gaps = 3/323 (0%)
Query: 42 LTLK-VPSFRVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGLGNDFILVDNRNS 99
LTL+ P+ R ++M+ + P SA+ +FL+RRES LHFVKY GLGNDFI+VDNR+S
Sbjct: 32 LTLRGNPTARRCVAAMA-VSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMVDNRDS 90
Query: 100 TEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFA 159
P++TPE+AAKLCDRNFG+GADGVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFA
Sbjct: 91 AVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFA 150
Query: 160 RFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSV 219
RFIAELENL G SF +HTGAGLI+PEIQ+DGKVKVDMG+PIL D+PT L + K+++V
Sbjct: 151 RFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPILSGPDIPTKLPSTKNEAV 210
Query: 220 VKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTN 279
V+++L VDG W VTCVSMGNPHCVTFGTKE + L VD L L++IGPKFEHH +FPARTN
Sbjct: 211 VQADLAVDGSTWQVTCVSMGNPHCVTFGTKELKVLHVDDLKLSDIGPKFEHHEMFPARTN 270
Query: 280 TEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIE 339
TEFVE++S S LKMRVWERGAGATLACGTGACAVVVAAVLEG AER+C VDLPGGPL+IE
Sbjct: 271 TEFVEVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIE 330
Query: 340 WKEEDNHVYMTGPAEVVFYGSVL 362
W+E+DNH+YMTGPAE VFYGS +
Sbjct: 331 WREDDNHIYMTGPAEAVFYGSAV 353
>gi|194700330|gb|ACF84249.1| unknown [Zea mays]
Length = 308
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/306 (77%), Positives = 270/306 (88%), Gaps = 1/306 (0%)
Query: 58 SIHAPESASRTSFLDRRESG-FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRN 116
++ AP S + TSFL+RRES LHFVKY GLGNDFI+VDNR+S+ P++TPE+AAKLCDRN
Sbjct: 2 AVSAPRSGAATSFLERRESERALHFVKYQGLGNDFIMVDNRDSSVPKVTPEEAAKLCDRN 61
Query: 117 FGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 176
FGIGADGVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFARFIAE+ENL G FT+
Sbjct: 62 FGIGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIAEIENLQGTNRFTI 121
Query: 177 HTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCV 236
HTGAG IVPEIQ DG+VKVDMGEPIL D+PT L A K+++VV++EL V+G+ W+VTCV
Sbjct: 122 HTGAGKIVPEIQSDGQVKVDMGEPILSGLDIPTKLLATKNKAVVQAELAVEGLTWHVTCV 181
Query: 237 SMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVW 296
SMGNPHCVTFG E + L+VD L L+EIGPKFEHH +FPARTNTEFV+++S S LKMRVW
Sbjct: 182 SMGNPHCVTFGANELKVLQVDDLKLSEIGPKFEHHEMFPARTNTEFVQVLSRSHLKMRVW 241
Query: 297 ERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVV 356
ERGAGATLACGTGACAVVVAAVLEG AER+C VDLPGGPL+IEW+E+DNHVYMTGPAEVV
Sbjct: 242 ERGAGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIEWREDDNHVYMTGPAEVV 301
Query: 357 FYGSVL 362
FYGSV+
Sbjct: 302 FYGSVV 307
>gi|160017028|sp|A2ZLS4.1|DAPF_ORYSI RecName: Full=Putative diaminopimelate epimerase, chloroplastic;
Short=DAP epimerase; Flags: Precursor
gi|125537070|gb|EAY83558.1| hypothetical protein OsI_38768 [Oryza sativa Indica Group]
Length = 357
Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/323 (73%), Positives = 277/323 (85%), Gaps = 3/323 (0%)
Query: 42 LTLK-VPSFRVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGLGNDFILVDNRNS 99
LTL+ P+ R ++M+ + P SA+ +FL+RRES LHFVKY GLGNDFI++DNR+S
Sbjct: 35 LTLRGNPTARRCVAAMA-VSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMMDNRDS 93
Query: 100 TEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFA 159
P++TPE+AAKLCDRNFG+GADGVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFA
Sbjct: 94 AVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFA 153
Query: 160 RFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSV 219
RFIAELENL G SF +HTGAGLI+PEIQ+DGKVKVDMG+PIL D+PT L + K+++V
Sbjct: 154 RFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPILSGPDIPTKLPSTKNEAV 213
Query: 220 VKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTN 279
V+++L VDG W VTCVSMGNPHCVTFGTKE + L VD L L++IGPKFEHH +FPARTN
Sbjct: 214 VQADLAVDGSTWQVTCVSMGNPHCVTFGTKELKVLHVDDLKLSDIGPKFEHHEMFPARTN 273
Query: 280 TEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIE 339
TEFVE++S S LKMRVWERGAGATLACGTGACAVVVAAVLEG AER+C VDLPGGPL+IE
Sbjct: 274 TEFVEVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIE 333
Query: 340 WKEEDNHVYMTGPAEVVFYGSVL 362
W+E+DNH+YMTGPAE VFYGS +
Sbjct: 334 WREDDNHIYMTGPAEAVFYGSAV 356
>gi|414868501|tpg|DAA47058.1| TPA: hypothetical protein ZEAMMB73_238513 [Zea mays]
Length = 349
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 239/335 (71%), Positives = 279/335 (83%), Gaps = 9/335 (2%)
Query: 33 SLTRPFGSNLTLKVPSF----RVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGL 87
+LT PF + L + R + +SM+ + AP S + SFL+RRES LHFVKY GL
Sbjct: 18 NLTTPFRGRVRLPLRGVSAAPRRAVASMA-VSAPRSGAAASFLERRESERALHFVKYQGL 76
Query: 88 GNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSE 147
GNDFI+VDNR+S+ P++TPE+AAKLCDRNFGIGADGVIF MPGVN DYTMRIFNSDGSE
Sbjct: 77 GNDFIMVDNRDSSVPKVTPEEAAKLCDRNFGIGADGVIFVMPGVNDADYTMRIFNSDGSE 136
Query: 148 PEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDV 207
PEMCGNGVRCFARFI ELENL G SFT+HTGAG I+PEIQ DG+VKVDMGEPIL +D+
Sbjct: 137 PEMCGNGVRCFARFIGELENLQGTHSFTIHTGAGKIIPEIQSDGQVKVDMGEPILSGADI 196
Query: 208 PTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPK 267
PT L A K+++V+++EL V+G+ W+VTCVSMGNPHCVTFG E LK+D L L+EIGPK
Sbjct: 197 PTKLVATKNKAVIQAELAVEGLTWHVTCVSMGNPHCVTFGANE---LKIDDLKLSEIGPK 253
Query: 268 FEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRC 327
FEHH +FPARTNTEFV+++S S LKMRVWERGAGATL CGTGACAVVVAAVLEG AER+C
Sbjct: 254 FEHHEMFPARTNTEFVQVLSRSHLKMRVWERGAGATLTCGTGACAVVVAAVLEGRAERKC 313
Query: 328 TVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VDLPGGPL+IEW+E+DNHVYMTGPAE VFYGSV+
Sbjct: 314 VVDLPGGPLEIEWREDDNHVYMTGPAEAVFYGSVV 348
>gi|148906926|gb|ABR16608.1| unknown [Picea sitchensis]
Length = 375
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 209/285 (73%), Positives = 241/285 (84%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
LHFVKYHGLGNDFILVDNR+S EP+I+PEQA KLCDRNFG+GADGVIFAMPGVNGTDY+M
Sbjct: 91 LHFVKYHGLGNDFILVDNRDSLEPKISPEQAIKLCDRNFGVGADGVIFAMPGVNGTDYSM 150
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RIFNSDGSEPEMCGNG+RC A F+AELEN QS+ +HT AGLIVP++ +DGKV VDMG
Sbjct: 151 RIFNSDGSEPEMCGNGIRCMACFVAELENSPRPQSYRIHTRAGLIVPKLLEDGKVMVDMG 210
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
+PIL A+++PT L +D +VVK+EL VDG W VTCVSMGNPHCVTF K+ + L V+
Sbjct: 211 QPILTAANIPTKLPKREDGAVVKAELPVDGKIWIVTCVSMGNPHCVTFSRKDCEVLDVNS 270
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
L L IGP FEHH +FPARTNTEFV+I+S S L+MRVWERGAGATLACG GACA+VVAAV
Sbjct: 271 LTLEHIGPLFEHHEMFPARTNTEFVQILSSSHLRMRVWERGAGATLACGAGACALVVAAV 330
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
LEG ++R+C VDLPGGPL+IEW E+DNHVYMTGPAE VF G L
Sbjct: 331 LEGRSQRKCLVDLPGGPLEIEWNEKDNHVYMTGPAEKVFSGCAFL 375
>gi|108862849|gb|ABG22051.1| Diaminopimelate epimerase, putative, expressed [Oryza sativa
Japonica Group]
Length = 271
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/270 (77%), Positives = 240/270 (88%)
Query: 93 LVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCG 152
+VDNR+S P++TPE+AAKLCDRNFG+GADGVIF MPGVNG DYTMRIFNSDGSEPEMCG
Sbjct: 1 MVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCG 60
Query: 153 NGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLS 212
NGVRCFARFIAELENL G SF +HTGAGLI+PEIQ+DGKVKVDMG+PIL D+PT L
Sbjct: 61 NGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPILSGPDIPTKLP 120
Query: 213 ANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHS 272
+ K+++VV+++L VDG W VTCVSMGNPHCVTFGTKE + L VD L L++IGPKFEHH
Sbjct: 121 STKNEAVVQADLAVDGSTWQVTCVSMGNPHCVTFGTKELKVLHVDDLKLSDIGPKFEHHE 180
Query: 273 VFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLP 332
+FPARTNTEFVE++S S LKMRVWERGAGATLACGTGACAVVVAAVLEG AER+C VDLP
Sbjct: 181 MFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKCVVDLP 240
Query: 333 GGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
GGPL+IEW+E+DNH+YMTGPAE VFYGS +
Sbjct: 241 GGPLEIEWREDDNHIYMTGPAEAVFYGSAV 270
>gi|307104456|gb|EFN52710.1| hypothetical protein CHLNCDRAFT_36797 [Chlorella variabilis]
Length = 303
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/303 (65%), Positives = 234/303 (77%), Gaps = 2/303 (0%)
Query: 59 IHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFG 118
+ P + SR R + + F KY GLGNDFILVDNR+ EP +TPEQA KLCDRNFG
Sbjct: 1 MQQPATPSRRQVA--RCAAAVKFAKYQGLGNDFILVDNRHQLEPVVTPEQAVKLCDRNFG 58
Query: 119 IGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 178
IG DGVIFA+P NGTDY+MRIFNSDGSEPEMCGNG+RC ARF+A G + VHT
Sbjct: 59 IGGDGVIFALPSENGTDYSMRIFNSDGSEPEMCGNGIRCLARFVAGDPRARGAGAQLVHT 118
Query: 179 GAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSM 238
AGLI P + DG+V VDMGEPIL+ DVPT+L + ++VV+ +L VDG +W +TCVSM
Sbjct: 119 LAGLIQPALLPDGQVCVDMGEPILRGPDVPTTLQPTQGEAVVQQKLAVDGKEWLMTCVSM 178
Query: 239 GNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWER 298
GNPH +TFG +G ++KVD ++L IGPKFEH+ VFPARTNTEFVE++S S ++M VWER
Sbjct: 179 GNPHAITFGLADGSSIKVDSIDLPGIGPKFEHNPVFPARTNTEFVEVLSRSHVRMVVWER 238
Query: 299 GAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFY 358
GAGATLACGTGACA VVA VLEGH +R C VDLPGGPL IEW+E DNH+YMTGPAE+VF
Sbjct: 239 GAGATLACGTGACATVVAGVLEGHTDRSCQVDLPGGPLHIEWRESDNHIYMTGPAELVFA 298
Query: 359 GSV 361
GSV
Sbjct: 299 GSV 301
>gi|302771151|ref|XP_002968994.1| hypothetical protein SELMODRAFT_170203 [Selaginella moellendorffii]
gi|300163499|gb|EFJ30110.1| hypothetical protein SELMODRAFT_170203 [Selaginella moellendorffii]
Length = 298
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/287 (68%), Positives = 235/287 (81%), Gaps = 1/287 (0%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L FVKYHGLGNDFILVDNR+S+ P+++PE A KLCDRNFG+G DGVIFAMPG G DY+M
Sbjct: 12 LDFVKYHGLGNDFILVDNRDSSAPKVSPEDAIKLCDRNFGVGGDGVIFAMPGTQGCDYSM 71
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RI+NSDGSEPEMCGNG+RC ARF+A LE +S+ +HT AG I+PE++ DG+V VDMG
Sbjct: 72 RIYNSDGSEPEMCGNGIRCMARFVARLEGTLEPRSYKIHTLAGTIIPELRPDGQVAVDMG 131
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ-NLKVD 257
P LK ++VPT L N D +VVK L VDG W VTCVSMGNPHCVTFG ++ + +L+V+
Sbjct: 132 PPTLKGAEVPTKLPVNADGAVVKQPLVVDGKTWLVTCVSMGNPHCVTFGEQDAKGDLEVN 191
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
KL L +IGP FEHH VFPARTNTEF++++S + L+MRVWERGAG TLACGTGACAVVVAA
Sbjct: 192 KLPLEKIGPLFEHHEVFPARTNTEFIQVLSDTHLRMRVWERGAGPTLACGTGACAVVVAA 251
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VLEG A+RRC VDLPGGPL+IEWKE +NHVYMTGPA+ VF G L+
Sbjct: 252 VLEGRAQRRCVVDLPGGPLEIEWKEANNHVYMTGPAKPVFSGIAYLD 298
>gi|384246250|gb|EIE19741.1| diaminopimelate epimerase [Coccomyxa subellipsoidea C-169]
Length = 292
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/285 (65%), Positives = 226/285 (79%), Gaps = 1/285 (0%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KY GLGNDFILVDNR+ T+P +T EQA +CDRNFG+G DGVIFA+P DYTM
Sbjct: 8 LEFTKYQGLGNDFILVDNRHQTDPLVTAEQAKFVCDRNFGVGGDGVIFALPPEGDVDYTM 67
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RIFNSDGSEPEMCGNG+RC ARF+AE +N G + +HT AGLI P +Q+DG+V VDMG
Sbjct: 68 RIFNSDGSEPEMCGNGIRCLARFVAEKDNA-GPVTHRIHTLAGLIQPTLQEDGQVCVDMG 126
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
PIL A +PT+L + ++VV++ L V+G +W +TCVSMGNPH VTFGT +GQ +KVD+
Sbjct: 127 APILAAPQIPTTLQPTQGEAVVQANLAVEGREWLMTCVSMGNPHAVTFGTADGQTIKVDE 186
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
L+LA IGPKFE ++VFPARTNTEFVEI++ ++M VWERGAGATLACGTGACA VVA V
Sbjct: 187 LDLAHIGPKFEKNAVFPARTNTEFVEILNRGHVRMHVWERGAGATLACGTGACATVVAGV 246
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
LEG +R C VDLPGGPL IEW+E DNHVYMTGPA VF G++ L
Sbjct: 247 LEGVLDRTCRVDLPGGPLMIEWREADNHVYMTGPALPVFTGNMQL 291
>gi|113474945|ref|YP_721006.1| diaminopimelate epimerase [Trichodesmium erythraeum IMS101]
gi|123056925|sp|Q116P1.1|DAPF_TRIEI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|110165993|gb|ABG50533.1| diaminopimelate epimerase [Trichodesmium erythraeum IMS101]
Length = 278
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/281 (67%), Positives = 222/281 (79%), Gaps = 8/281 (2%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F KYHGLGNDFIL+DNR+ +P +TPEQA +LCDRNFGIGADGVIFA+PGV TDYTMRI
Sbjct: 5 FTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPGVKQTDYTMRI 64
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 200
FNSDGSEPEMCGNG+RC A+FIAELEN N K + +HTGAG+IVPE+Q DG+V VDMG+P
Sbjct: 65 FNSDGSEPEMCGNGIRCLAKFIAELEN-NNKTKYNIHTGAGIIVPELQGDGQVTVDMGQP 123
Query: 201 ILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLN 260
L AS++PT+L AN D VV L+V G W VTCVSMGNPHC+TF V ++
Sbjct: 124 RLLASEIPTTL-ANADDKVVDQLLEVGGKSWFVTCVSMGNPHCITFVE------DVTAID 176
Query: 261 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLE 320
LA+IGPKFEH+ VFP RTNTEF+++ISP +KMRVWERGAGATLACGTGACA VVA VL
Sbjct: 177 LAKIGPKFEHNPVFPERTNTEFIQVISPKYVKMRVWERGAGATLACGTGACASVVAGVLT 236
Query: 321 GHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+ ER TV+LPGG L+IEW D +YMTGPAE VF G +
Sbjct: 237 QNNERLVTVELPGGCLEIEWSTIDQKIYMTGPAEKVFTGII 277
>gi|428224487|ref|YP_007108584.1| diaminopimelate epimerase [Geitlerinema sp. PCC 7407]
gi|427984388|gb|AFY65532.1| diaminopimelate epimerase [Geitlerinema sp. PCC 7407]
Length = 279
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/282 (65%), Positives = 221/282 (78%), Gaps = 8/282 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ FVKYHGLGNDFIL+DNR S+EP ITPE+A CDR+FGIGADGVIFA+PG +GTDYTM
Sbjct: 3 IEFVKYHGLGNDFILIDNRASSEPLITPEEAIAWCDRHFGIGADGVIFALPGQDGTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGK-QSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC ARF+AELE + + + + +HT AG+I PE+Q DG++KVDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLARFLAELEGITDQTRRYRIHTLAGVIAPELQADGQIKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP L A +PT+L A+ D+ VV L+V G W VTCVSMGNPHC+TF V
Sbjct: 123 GEPQLLAGQIPTTL-ASSDEKVVDQPLEVAGETWQVTCVSMGNPHCITFVE------DVA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L IGPKFEHH+VFP RTNTEF++++ P LKMRVWERGAG TLACGTGACA +VAA
Sbjct: 176 AVALESIGPKFEHHAVFPQRTNTEFIQVVRPDYLKMRVWERGAGITLACGTGACASLVAA 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VL ++RR TV+LPGGPL IEW EDN +YMTGPAE VF G
Sbjct: 236 VLTQRSDRRATVELPGGPLLIEWSAEDNRLYMTGPAERVFAG 277
>gi|332711586|ref|ZP_08431517.1| diaminopimelate epimerase [Moorea producens 3L]
gi|332349564|gb|EGJ29173.1| diaminopimelate epimerase [Moorea producens 3L]
Length = 281
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 184/283 (65%), Positives = 218/283 (77%), Gaps = 7/283 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+ +PRIT EQA +LCDRNFGIGADGVIFA+PG GTDYTM
Sbjct: 1 MEFTKYHGLGNDFILIDNRDDPKPRITSEQALQLCDRNFGIGADGVIFALPGQEGTDYTM 60
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RIFNSDGSEPEMCGNG+RC A+F+A+LE N K + +HT AG+I+PE++DDGKV+VDMG
Sbjct: 61 RIFNSDGSEPEMCGNGIRCLAKFLADLEGANHKTHYRIHTLAGVIIPELKDDGKVRVDMG 120
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
P L A+ +PT L A DQ V+ + +++ W VTCVSMGNPHC+TF D
Sbjct: 121 MPQLSAAQIPTVL-AEADQKVINTPIEIADKLWEVTCVSMGNPHCITFVE------DADA 173
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
+ L IGP FEHHSVFP RTNTEF++++ P LKMRVWERGAGATLACGTGACA VVA V
Sbjct: 174 IPLETIGPLFEHHSVFPQRTNTEFIQVVRPDYLKMRVWERGAGATLACGTGACASVVAGV 233
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
L ++R CTV+LPGG LDIEW E D VYMTGPAE VF G +
Sbjct: 234 LTQKSDRICTVELPGGCLDIEWSETDQRVYMTGPAEQVFSGKL 276
>gi|411120329|ref|ZP_11392704.1| diaminopimelate epimerase [Oscillatoriales cyanobacterium JSC-12]
gi|410709779|gb|EKQ67291.1| diaminopimelate epimerase [Oscillatoriales cyanobacterium JSC-12]
Length = 280
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 176/282 (62%), Positives = 218/282 (77%), Gaps = 7/282 (2%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F KYHGLGNDFILVDNR S+EP++TPEQ+ KLCDR+FGIGADGVIF +PG NG DYTMRI
Sbjct: 5 FTKYHGLGNDFILVDNRASSEPKLTPEQSVKLCDRHFGIGADGVIFVLPGQNGADYTMRI 64
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 200
FNSDGSEPEMCGNG+RCFARF+AELEN+ +S+ ++T +G+I P+++ G V VDMGEP
Sbjct: 65 FNSDGSEPEMCGNGIRCFARFVAELENVTQPRSYNIYTLSGMITPQLESTGMVTVDMGEP 124
Query: 201 ILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLN 260
L A+++PT+L A D V+ L+VD W VTCVSMGNPHC+TF V ++
Sbjct: 125 RLLAAEIPTTLGA-PDSKVINHPLEVDNKTWEVTCVSMGNPHCITFVE------DVSQIP 177
Query: 261 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLE 320
L +GPKFE H FP + N EF++++ LKMRVWERGAG TLACGTGACA +VAAVL
Sbjct: 178 LETVGPKFETHPSFPKKINAEFIQVVRSDYLKMRVWERGAGITLACGTGACASLVAAVLT 237
Query: 321 GHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
GH++RR T++LPGG L IEW + +NH+YMTGPAE VF G V+
Sbjct: 238 GHSDRRTTIELPGGCLQIEWADSNNHLYMTGPAEKVFQGHVM 279
>gi|16332245|ref|NP_442973.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803]
gi|383323986|ref|YP_005384840.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383327155|ref|YP_005388009.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383493039|ref|YP_005410716.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384438307|ref|YP_005653032.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803]
gi|451816396|ref|YP_007452848.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803]
gi|2494041|sp|P74667.1|DAPF_SYNY3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|1653875|dbj|BAA18785.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803]
gi|339275340|dbj|BAK51827.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803]
gi|359273306|dbj|BAL30825.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359276476|dbj|BAL33994.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279646|dbj|BAL37163.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407960104|dbj|BAM53344.1| diaminopimelate epimerase [Bacillus subtilis BEST7613]
gi|451782365|gb|AGF53334.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803]
Length = 279
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/282 (65%), Positives = 217/282 (76%), Gaps = 8/282 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KYHGLGNDFILVDNR STEP +TP+QA +LCDR+FGIGADGVIFA+PG GTDYTM
Sbjct: 3 LSFSKYHGLGNDFILVDNRQSTEPCLTPDQAQQLCDRHFGIGADGVIFALPGQGGTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RIFNSDGSEPEMCGNG+RC A+F+A+LE + K ++ +HT AG+I P++ DG+VKVDMG
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAKFLADLEGVEEK-TYRIHTLAGVITPQLLADGQVKVDMG 121
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
EP L A +PT+L A + VV L V G W VTCVSMGNPHC+TF VD
Sbjct: 122 EPQLLAELIPTTL-APAGEKVVDLPLAVAGQTWAVTCVSMGNPHCLTFVD------DVDS 174
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
LNL EIGP FEHH F RTNTEF++++ +LKMRVWERGAG TLACGTGACA VVAAV
Sbjct: 175 LNLTEIGPLFEHHPQFSQRTNTEFIQVLGSDRLKMRVWERGAGITLACGTGACATVVAAV 234
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
L G +RRCTV+LPGG L+IEW +DN +YMTGPA+ VF G
Sbjct: 235 LTGRGDRRCTVELPGGNLEIEWSAQDNRLYMTGPAQRVFSGQ 276
>gi|428312482|ref|YP_007123459.1| diaminopimelate epimerase [Microcoleus sp. PCC 7113]
gi|428254094|gb|AFZ20053.1| diaminopimelate epimerase [Microcoleus sp. PCC 7113]
Length = 281
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/283 (62%), Positives = 215/283 (75%), Gaps = 7/283 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR T+P IT EQA +LCDR+FGIGADGVIFA+PG DYTM
Sbjct: 3 IEFTKYHGLGNDFILIDNRADTQPIITSEQAVQLCDRHFGIGADGVIFALPGEEAGDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RIFNSDGSEPEMCGNG+RCFA+FIA+LE + K + +HT AG+I+P+I+ +GKVKVDMG
Sbjct: 63 RIFNSDGSEPEMCGNGIRCFAQFIADLEGADAKSEYRIHTLAGVIIPKIEGEGKVKVDMG 122
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
P L A+ +PT+L A+ +Q + L V G W VTCVSMGNPHC+TF V
Sbjct: 123 MPQLLAAQIPTTL-ADAEQKAIAVPLQVAGQSWEVTCVSMGNPHCITFVE------DVAA 175
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
+ L IGP+FEHH FP RTNTEF++++ P LKMRVWERGAG TLACGTGACA VVA V
Sbjct: 176 IPLEAIGPQFEHHPAFPQRTNTEFIQVVRPDYLKMRVWERGAGVTLACGTGACAAVVAGV 235
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
L G ++R+ TV+LPGG L+IEW ++D VYMTGPAE VF G V
Sbjct: 236 LTGKSDRKATVELPGGCLEIEWAQQDQRVYMTGPAERVFRGKV 278
>gi|159479426|ref|XP_001697794.1| diaminopimelate epimerase [Chlamydomonas reinhardtii]
gi|158274162|gb|EDO99946.1| diaminopimelate epimerase [Chlamydomonas reinhardtii]
Length = 318
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/300 (60%), Positives = 232/300 (77%), Gaps = 6/300 (2%)
Query: 66 SRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVI 125
SR+S + L F KY GLGNDFILVDNR+++EP +TPEQA K+CDRNFGIG DGVI
Sbjct: 19 SRSSVRVMASAKPLTFSKYQGLGNDFILVDNRHTSEPVVTPEQAVKICDRNFGIGGDGVI 78
Query: 126 FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVP 185
FA+P V TD TMRIFNSDGSEPEMCGNG+RC A+F+++++N + + +HT AGLI P
Sbjct: 79 FALPPVGDTDLTMRIFNSDGSEPEMCGNGIRCLAKFVSDIDNA-APRKYKIHTLAGLIQP 137
Query: 186 EIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVT 245
E+ DG+V+VDMG PIL+ VPT+L+ + +VV+ +L V+G + VTCVSMGNPH V
Sbjct: 138 EMLADGQVRVDMGTPILEGPKVPTTLAPTQGSTVVQQDLVVEGKTYKVTCVSMGNPHAVI 197
Query: 246 FGTKEGQNLKVDKLN--LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGAT 303
+ +G+ +K+D L+ LA +GPKFE ++VFPARTNTEFVE+IS S ++M VWERGAG T
Sbjct: 198 YSC-DGEPIKIDDLDKELAALGPKFERNAVFPARTNTEFVEVISRSHVRMVVWERGAGRT 256
Query: 304 LACGTGACAVVVAAVLEGHAERR--CTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
LACGTGACA+VVA +LEG +R C VDLPGGPL IEW++ DNH+YMTGPAE+VF G +
Sbjct: 257 LACGTGACALVVAGILEGRVDRNQVCRVDLPGGPLQIEWRQSDNHIYMTGPAELVFSGQL 316
>gi|145343420|ref|XP_001416323.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576548|gb|ABO94616.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 407
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/290 (61%), Positives = 226/290 (77%), Gaps = 6/290 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGT-DYT 137
+ F+KY GLGNDFIL+DNR+S +++ E AAK+CDRNFGIG DGVIFAMP + + DY+
Sbjct: 119 IDFIKYQGLGNDFILIDNRDSATVKMSSEAAAKMCDRNFGIGGDGVIFAMPPNDASEDYS 178
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
MR+FNSDGSEPEMCGNG+RC ARF+++L+ + K+ + V T AGLI PE++ DG+V VDM
Sbjct: 179 MRMFNSDGSEPEMCGNGIRCLARFVSDLDAMPPKK-YKVGTLAGLIQPEMRADGQVAVDM 237
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFG----TKEGQN 253
G PI + S+VPT+L+A +D VV++E+DVDG KW V VSMGNPHC+TFG +G
Sbjct: 238 GMPIFEPSEVPTTLAATQDGKVVRAEMDVDGEKWLVNAVSMGNPHCITFGRAGGEADGPG 297
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
LK+D+ L+ +GPKFE H FPARTNTEF ++++ + +KM VWERGAGATLACGTGACA
Sbjct: 298 LKLDEFPLSVVGPKFESHPCFPARTNTEFTQVVNRNYVKMHVWERGAGATLACGTGACAT 357
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VVA VLEG +RRCTV+LPGGPL+IEW+E D + MTGPAE VF G L
Sbjct: 358 VVAGVLEGRVDRRCTVELPGGPLEIEWRESDGRIIMTGPAEPVFAGKYFL 407
>gi|308800918|ref|XP_003075240.1| unnamed protein product [Ostreococcus tauri]
gi|116061794|emb|CAL52512.1| unnamed protein product [Ostreococcus tauri]
Length = 327
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/325 (57%), Positives = 232/325 (71%), Gaps = 10/325 (3%)
Query: 48 SFRVSASSMSSIHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPE 107
S R + + AP SA+R S R F KY GLGNDF+L+DNR S +T E
Sbjct: 4 SARAPIAQVRCALAPRSATRGSTTRARAGKTFEFAKYQGLGNDFVLIDNRASDAVPVTAE 63
Query: 108 QAAKLCDRNFGIGADGVIFAMPGVNGTD--YTMRIFNSDGSEPEMCGNGVRCFARFIAEL 165
QAAK+CDRNFGIGADG+IFAMP GTD Y+MR+FNSDGSEPEMCGNG+RC ARF++++
Sbjct: 64 QAAKMCDRNFGIGADGLIFAMPARPGTDEDYSMRMFNSDGSEPEMCGNGIRCLARFVSDV 123
Query: 166 ENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELD 225
+ + + + V T AGLI PE++ DG+V VDMG+P+L+ ++VPT L+A KD + V+ E+D
Sbjct: 124 DG-SAPRKYKVWTLAGLIQPELRADGQVAVDMGKPVLEPANVPTKLAATKDSAAVRCEMD 182
Query: 226 VDGVKWNVTCVSMGNPHCVTFGTK-------EGQNLKVDKLNLAEIGPKFEHHSVFPART 278
+DG KW VT VSMGNPHCVTFG +G LKV+ L+ GPKFE H FPART
Sbjct: 183 IDGEKWLVTAVSMGNPHCVTFGRAGDGELGADGPGLKVEDFALSTYGPKFESHVNFPART 242
Query: 279 NTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDI 338
NTEF E+++ +KM VWERGAGATLACGTGACA VVA VLEG +R C V+LPGGPL+I
Sbjct: 243 NTEFTEVVNRGYVKMHVWERGAGATLACGTGACATVVAGVLEGRVDRECVVELPGGPLEI 302
Query: 339 EWKEEDNHVYMTGPAEVVFYGSVLL 363
W+E D +V MTGPAE VF G + +
Sbjct: 303 HWREADGNVIMTGPAEPVFTGVITV 327
>gi|434399675|ref|YP_007133679.1| diaminopimelate epimerase [Stanieria cyanosphaera PCC 7437]
gi|428270772|gb|AFZ36713.1| diaminopimelate epimerase [Stanieria cyanosphaera PCC 7437]
Length = 282
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 176/287 (61%), Positives = 223/287 (77%), Gaps = 8/287 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KY GLGNDFIL+DNR+S+EP +TPEQA ++CDR+FGIGADGVIFA+PG + TDYTM
Sbjct: 3 IKFSKYQGLGNDFILIDNRHSSEPMVTPEQAMQMCDRHFGIGADGVIFALPGTDNTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI+NSDGSEPEMCGNG+RC A+FIA+LE +S+ +HT AG+I P++Q +G V VDM
Sbjct: 63 RIYNSDGSEPEMCGNGIRCLAQFIADLEQTEQINKSYRIHTLAGVITPQLQSNGLVTVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G+P L+A+ +PT+L A +D+ V+ L+V G W VTCVSMGNPHC+TF T D
Sbjct: 123 GKPQLEAAKIPTTLCAPEDK-VINQNLEVAGQSWLVTCVSMGNPHCITFVTDS------D 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+++L +IG +FEHH FP RTNTEF++++ LKMRVWERGAG TLACGTGACA VVA
Sbjct: 176 RISLEQIGSQFEHHPAFPQRTNTEFIQVVRSDYLKMRVWERGAGITLACGTGACASVVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VL G +ER+CTV+LPGG L IEW E D VYMTGPA+ VF G++ +N
Sbjct: 236 VLTGQSERKCTVELPGGCLQIEWSETDGRVYMTGPAKQVFVGNLWIN 282
>gi|302854253|ref|XP_002958636.1| hypothetical protein VOLCADRAFT_108222 [Volvox carteri f.
nagariensis]
gi|300256025|gb|EFJ40302.1| hypothetical protein VOLCADRAFT_108222 [Volvox carteri f.
nagariensis]
Length = 323
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/301 (60%), Positives = 232/301 (77%), Gaps = 6/301 (1%)
Query: 65 ASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV 124
SR SF + L F KY GLGNDFIL+DNR+S+ P +TPEQA K+CDRNFG+G DGV
Sbjct: 23 GSRGSFRVMASASPLSFSKYQGLGNDFILIDNRHSSNPVVTPEQAVKICDRNFGVGGDGV 82
Query: 125 IFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIV 184
IFA+P V TD TMRIFNSDGSEPEMCGNG+RC A+F+A+++ + + +HT AGLI
Sbjct: 83 IFALPPVGDTDLTMRIFNSDGSEPEMCGNGIRCLAKFVADVDKA-APRKYKIHTLAGLIQ 141
Query: 185 PEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCV 244
PE+ DG+V+VDMGEPIL+ + VPT+L+ + +VV+ +L VDG + V+CVSMGNPH V
Sbjct: 142 PELLADGQVRVDMGEPILEGAKVPTTLAPTQGSTVVQQDLIVDGKTYKVSCVSMGNPHAV 201
Query: 245 TFGTKEGQNLKVDKL--NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGA 302
+ + +G +K+D L +LA +GPKFE ++VFPARTNTEFVE+++ S ++M VWERGAG
Sbjct: 202 IY-SCDGDTIKIDDLEKDLAVLGPKFERNAVFPARTNTEFVEVVNRSHVRMVVWERGAGR 260
Query: 303 TLACGTGACAVVVAAVLEGHAERR--CTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
TLACGTGACA+VVA +LEG +R C VDLPGGPL IEW EDNH+YMTGPAE+VF G+
Sbjct: 261 TLACGTGACALVVAGILEGRVDREKTCRVDLPGGPLQIEWNTEDNHIYMTGPAELVFNGA 320
Query: 361 V 361
+
Sbjct: 321 L 321
>gi|75909296|ref|YP_323592.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413]
gi|75703021|gb|ABA22697.1| diaminopimelate epimerase [Anabaena variabilis ATCC 29413]
Length = 282
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/284 (62%), Positives = 219/284 (77%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR S P ITPE+A ++CDR+FGIGADGVIFA+PG NGTDYTM
Sbjct: 6 IEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGENGTDYTM 65
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A F+A+LE L+ K ++ +HT AG+I P++ DG++KVDM
Sbjct: 66 RIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNKDTYRIHTLAGVITPQLTPDGQIKVDM 125
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+++A DQ V+ L+V+G W VTCVSMGNPHC+TF V
Sbjct: 126 GLPRLLAGEIPTNIAA-ADQKVINQPLEVEGKTWEVTCVSMGNPHCITFVE------DVA 178
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L IGPKFEHH FP RTNTEF++++S LKMRVWERGAG TLACGTGACA +VAA
Sbjct: 179 AIPLETIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAGITLACGTGACASLVAA 238
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL G ++R TV+LPGGPL+IEW E D +YMTGPA+ VF G +
Sbjct: 239 VLTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 282
>gi|427723034|ref|YP_007070311.1| diaminopimelate epimerase [Leptolyngbya sp. PCC 7376]
gi|427354754|gb|AFY37477.1| diaminopimelate epimerase [Leptolyngbya sp. PCC 7376]
Length = 281
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/287 (63%), Positives = 219/287 (76%), Gaps = 10/287 (3%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KY GLGNDFIL+DNR TEP +TPEQAAKLCDR+FGIGADGVIFA+PG +G+DYTM
Sbjct: 3 LEFTKYQGLGNDFILLDNRQQTEPLVTPEQAAKLCDRHFGIGADGVIFALPGTDGSDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLN--GKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RI+NSDGSEPEMCGNG+RC ARFI +LE N GK ++ +HT AG+I P+++ + +V+VD
Sbjct: 63 RIYNSDGSEPEMCGNGIRCMARFIDQLEGGNPVGK-TYDIHTLAGMIRPQLEAEEQVRVD 121
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MGEPIL +++PTSL+ + +S V LDV G W VTCVSMGNPHC+TF V
Sbjct: 122 MGEPILTPAEIPTSLADDAGKS-VNQPLDVVGKTWTVTCVSMGNPHCITFVD------DV 174
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
+ L EIG FE HS FP + NTEF+E++ P +KMRVWERGAG TLACGTGACA VVA
Sbjct: 175 AAIPLEEIGADFETHSAFPQKINTEFIEVVRPDYIKMRVWERGAGITLACGTGACASVVA 234
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VL G+ +R CTV+LPGG L IEW + DNHVYMTGPAE+ F GS L
Sbjct: 235 GVLTGNCDRLCTVELPGGCLQIEWSKADNHVYMTGPAEISFQGSTAL 281
>gi|228963958|ref|NP_486088.2| diaminopimelate epimerase [Nostoc sp. PCC 7120]
gi|22256738|sp|Q8YVD0.2|DAPF2_ANASP RecName: Full=Diaminopimelate epimerase 2; Short=DAP epimerase 2
Length = 279
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/284 (62%), Positives = 217/284 (76%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR S P ITPE+A ++CDR+FGIGADGVIFA+PG NGTDYTM
Sbjct: 3 IEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGENGTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A F+A+LE L+ K ++ +HT AG+I P++ DG++KVDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNKDTYRIHTLAGVITPQLTPDGQIKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+L A D V+ L+V+G W VTCVSMGNPHC+TF V
Sbjct: 123 GLPRLLAGEIPTTLGA-ADGKVINQPLEVEGQTWEVTCVSMGNPHCITFVE------DVA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L IGPKFEHH FP RTNTEF++++S LKMRVWERGAG TLACGTGACA +VAA
Sbjct: 176 AIPLEIIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAGITLACGTGACASLVAA 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL G ++R TV+LPGGPL+IEW E D +YMTGPA+ VF G +
Sbjct: 236 VLTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 279
>gi|302817965|ref|XP_002990657.1| hypothetical protein SELMODRAFT_132079 [Selaginella moellendorffii]
gi|300141579|gb|EFJ08289.1| hypothetical protein SELMODRAFT_132079 [Selaginella moellendorffii]
Length = 298
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/275 (66%), Positives = 220/275 (80%), Gaps = 2/275 (0%)
Query: 92 ILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMC 151
+ VDNR+S+ P+++PE A KLCDRNFG+G DGVIFAMPG G DY+MRI+NSDGSEPEMC
Sbjct: 24 VQVDNRDSSAPKVSPEDAIKLCDRNFGVGGDGVIFAMPGTQGCDYSMRIYNSDGSEPEMC 83
Query: 152 GNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSL 211
GNG+RC ARF+A LE +S+ +HT AG I+PE++ DG+V VDMG P LK ++VPT L
Sbjct: 84 GNGIRCMARFVARLEGTLEPRSYKIHTLAGTIIPELRPDGQVAVDMGPPTLKGAEVPTKL 143
Query: 212 SANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL--KVDKLNLAEIGPKFE 269
N D +VVK L VDG W VTCVSMGNPHCVTFG ++ + + V+KL L +IGP FE
Sbjct: 144 PVNADGAVVKQPLVVDGRTWLVTCVSMGNPHCVTFGEQDAKGVIKHVNKLPLEKIGPLFE 203
Query: 270 HHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTV 329
HH VFPARTNTEF++++S + L+MRVWERGAG TLACGTGACAVVVAAVLEG A+RRC V
Sbjct: 204 HHEVFPARTNTEFIQVLSDTHLRMRVWERGAGPTLACGTGACAVVVAAVLEGRAQRRCVV 263
Query: 330 DLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
DLPGGPL+IEWKE +NHVYMTGPA+ VF G L+
Sbjct: 264 DLPGGPLEIEWKEANNHVYMTGPAKPVFSGIAYLD 298
>gi|67920563|ref|ZP_00514083.1| Diaminopimelate epimerase [Crocosphaera watsonii WH 8501]
gi|67858047|gb|EAM53286.1| Diaminopimelate epimerase [Crocosphaera watsonii WH 8501]
Length = 278
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/284 (61%), Positives = 219/284 (77%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KY GLGNDFILVDNR+ST P ++PE+A KLCDR+FGIGADGVIFA+PG +DYTM
Sbjct: 1 MEFTKYQGLGNDFILVDNRHSTTPSLSPEEAVKLCDRHFGIGADGVIFALPGDENSDYTM 60
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEP+MCGNG+RC ARF+A+LE ++ ++S+ + T AG+I+P ++ +G+VKVDM
Sbjct: 61 RIFNSDGSEPQMCGNGIRCLARFLAKLEGIDTTEKSYRIQTLAGIIIPNLEAEGQVKVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+L+ ++ V+ L+V W VTCVSMGNPHC+TF V
Sbjct: 121 GTPFLLAKEIPTTLT-KAEEKVIDQSLEVGDQSWLVTCVSMGNPHCITFVED------VA 173
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
K+ L IGPKFEHH+VFP RTNTEF+E++ LKMRVWERGAG TLACGTGACA VVA
Sbjct: 174 KIPLETIGPKFEHHAVFPERTNTEFIEVVRRDYLKMRVWERGAGITLACGTGACASVVAG 233
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL GH +R CTV+LPGG L IEW ++DN +YMTGPAE VF G +
Sbjct: 234 VLTGHCDRLCTVELPGGCLTIEWSKKDNRLYMTGPAEEVFTGVI 277
>gi|170078250|ref|YP_001734888.1| diaminopimelate epimerase [Synechococcus sp. PCC 7002]
gi|229813250|sp|B1XP39.1|DAPF_SYNP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|169885919|gb|ACA99632.1| diaminopimelate epimerase [Synechococcus sp. PCC 7002]
Length = 281
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/286 (62%), Positives = 209/286 (73%), Gaps = 8/286 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KY GLGNDFIL+DNR T P +TPEQA +LCDR+FGIGADGVIFA+PG G DYTM
Sbjct: 3 LEFTKYQGLGNDFILLDNRQQTTPLVTPEQAIQLCDRHFGIGADGVIFALPGQAGADYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGK-QSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC ARFI LE N +++++HT AG+I P ++ D V+VDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLARFIDHLEGGNAPGKTYSIHTLAGMIRPRLETDALVRVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEPIL A+D+PT+L + Q+V L+V G W VTCVSMGNPHC+TF V
Sbjct: 123 GEPILTATDIPTTLKDSNGQAV-NQPLEVAGKTWMVTCVSMGNPHCITFVED------VA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L IG FEHH FP R NTEF+E++ P +KMRVWERGAG TLACGTGACA VVA
Sbjct: 176 AIALEVIGKDFEHHPAFPQRINTEFIEVVRPDYIKMRVWERGAGITLACGTGACASVVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VL GH +R CTV+LPGG L IEW DNH+YMTGPA + F G V L
Sbjct: 236 VLTGHCDRLCTVELPGGCLQIEWSAADNHIYMTGPAAISFQGQVTL 281
>gi|428209737|ref|YP_007094090.1| diaminopimelate epimerase [Chroococcidiopsis thermalis PCC 7203]
gi|428011658|gb|AFY90221.1| diaminopimelate epimerase [Chroococcidiopsis thermalis PCC 7203]
Length = 302
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/284 (63%), Positives = 214/284 (75%), Gaps = 9/284 (3%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ FVKYHGLGNDFIL+DNR S+EP +TPEQA KLCDR+FGIGADGVIFA+PG NG DYTM
Sbjct: 26 IEFVKYHGLGNDFILIDNRASSEPIVTPEQAVKLCDRHFGIGADGVIFALPGTNGADYTM 85
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELE-NLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RCFA+F+A+LE + N +HT AG+IVPE+ DG+VKVDM
Sbjct: 86 RIFNSDGSEPEMCGNGIRCFAKFLADLEGSTNPTSRLRIHTLAGIIVPELTADGQVKVDM 145
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP L A ++PT+L + V+ L+V G W+VTCVSMGNPHC+TF V
Sbjct: 146 GEPRLLAEEIPTTL-VTAGEKVINQSLNVAGQTWSVTCVSMGNPHCITFVD------DVA 198
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L EIGP+FEHH VFP RTNTEF+++ LKMRVWERGAGATLACGTGACA +VA
Sbjct: 199 AIPLEEIGPQFEHHPVFPQRTNTEFIQVTGRDYLKMRVWERGAGATLACGTGACASLVAG 258
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL G +R TV+LPGG L IEW D +YMTG AE VF G +
Sbjct: 259 VLAGKCDRVATVELPGGCLQIEWS-HDQKLYMTGAAERVFAGKI 301
>gi|427727519|ref|YP_007073756.1| diaminopimelate epimerase [Nostoc sp. PCC 7524]
gi|427363438|gb|AFY46159.1| diaminopimelate epimerase [Nostoc sp. PCC 7524]
Length = 279
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/284 (63%), Positives = 214/284 (75%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+S+ P +TPEQA KLCDR+FGIGADGVIFA+PG +GTDYTM
Sbjct: 3 IEFTKYHGLGNDFILIDNRSSSLPVLTPEQAVKLCDRHFGIGADGVIFALPGEHGTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENL-NGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A F+A+LE + K ++ + T AG+I P++ DG++KVDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAGFLADLEGIFRNKDTYQIQTLAGVITPQLMPDGQIKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+LS D V+ L+V+G W VTCVSMGNPHC+TF V
Sbjct: 123 GVPRLLAEEIPTTLS-TPDTKVINQPLEVEGQTWEVTCVSMGNPHCITFVE------DVT 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ LA IG KFEHHS FP RTNTEF+E++S LKMRVWERGAG TLACGTGACA +VA
Sbjct: 176 AIPLATIGLKFEHHSAFPQRTNTEFIEVVSRDYLKMRVWERGAGITLACGTGACASLVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL G +R TV+LPGG L IEW E D +YMTGPAE VF G V
Sbjct: 236 VLTGKCDRAATVELPGGALHIEWSEVDQRIYMTGPAERVFTGKV 279
>gi|56752176|ref|YP_172877.1| diaminopimelate epimerase [Synechococcus elongatus PCC 6301]
gi|81300736|ref|YP_400944.1| diaminopimelate epimerase [Synechococcus elongatus PCC 7942]
gi|81561459|sp|Q5N013.1|DAPF_SYNP6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|123556543|sp|Q31LW2.1|DAPF_SYNE7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|56687135|dbj|BAD80357.1| diaminopimelate epimerase [Synechococcus elongatus PCC 6301]
gi|81169617|gb|ABB57957.1| diaminopimelate epimerase [Synechococcus elongatus PCC 7942]
Length = 280
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/286 (63%), Positives = 220/286 (76%), Gaps = 11/286 (3%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KYHGLGNDFILVDNR S EPR+TPEQA ++CDRNFG+GADGVIFA+PG +DY M
Sbjct: 3 LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPGSGDSDYVM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQS-FTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A+F++EL+ G QS + + TGAGLIVP + + G V VDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAKFLSELD--GGAQSRYRIATGAGLIVPTLTETGLVTVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G LK ++PT+L+ D+ VV+++L+V W VT VSMGNPHC+TF V
Sbjct: 121 GPAYLKPVEIPTTLTGTGDR-VVEADLEVGDRPWKVTTVSMGNPHCITFVE------DVA 173
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ LAEIGP FEHH VFP RTNTEFVE++ P LKMRVWERGAGATLACGTGACA +VAA
Sbjct: 174 AVPLAEIGPLFEHHPVFPQRTNTEFVEVVRPDYLKMRVWERGAGATLACGTGACATLVAA 233
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VL G ++R+ TV+LPGGPL IEW+ ED H++MTGPA VF GS+ L
Sbjct: 234 VLTGRSDRQATVELPGGPLQIEWR-EDGHLFMTGPAVKVFSGSMEL 278
>gi|354569123|ref|ZP_08988281.1| Diaminopimelate epimerase [Fischerella sp. JSC-11]
gi|353538998|gb|EHC08498.1| Diaminopimelate epimerase [Fischerella sp. JSC-11]
Length = 281
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/287 (62%), Positives = 213/287 (74%), Gaps = 10/287 (3%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR S EP ITPEQA +LCDR+FGIGADG+IFAMPG + TDYTM
Sbjct: 3 IEFTKYHGLGNDFILIDNRFSCEPVITPEQAVQLCDRHFGIGADGIIFAMPGEDNTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQS--FTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSEPEMCGNG+RC A F+AELE +QS + +HT AG+I PE+ DG+VKVD
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAAFLAELEG-ESRQSNQYRIHTLAGVITPELMSDGQVKVD 121
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L A ++PT+L DQ V+ L+V G W+VTCVSMGNPHC+TF V
Sbjct: 122 MGIPRLLAGEIPTTLCP-ADQKVISQPLEVAGKSWDVTCVSMGNPHCITFVE------DV 174
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
+ L IGP+FEHH VFP RTNTEF++++ P LKMRVWERGAG TLACGTGACA +VA
Sbjct: 175 AAIPLDHIGPQFEHHPVFPQRTNTEFIQVVRPDYLKMRVWERGAGITLACGTGACAALVA 234
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VL G +R TV+LPGG L I W E D VYMTGPA+ VF G ++
Sbjct: 235 GVLAGRCDRTATVELPGGCLQIAWSEVDQRVYMTGPAKQVFQGKYVI 281
>gi|428307107|ref|YP_007143932.1| diaminopimelate epimerase [Crinalium epipsammum PCC 9333]
gi|428248642|gb|AFZ14422.1| diaminopimelate epimerase [Crinalium epipsammum PCC 9333]
Length = 286
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/289 (62%), Positives = 216/289 (74%), Gaps = 15/289 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR S+EP +TP+QA +LCDR+FGIGADGVIFA+PG NG DY+M
Sbjct: 3 VKFTKYHGLGNDFILIDNRASSEPSLTPDQAIQLCDRHFGIGADGVIFALPGQNGNDYSM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELE--------NLNGKQSFTVHTGAGLIVPEIQDD 190
RIFNSDGSEPEMCGNG+RC A+FIA+LE N +S+ +HT AG+I P+++++
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAKFIADLEAQDISSDPNNITPRSYKIHTLAGVITPKLENN 122
Query: 191 GKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKE 250
G V VDMG P L AS++PT+L A DQ V+ LDV G W VTCVSMGNPHC+TF
Sbjct: 123 GLVTVDMGLPQLTASEIPTTL-APADQKVINQPLDVAGKTWLVTCVSMGNPHCLTFVD-- 179
Query: 251 GQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
V ++L IG FEHH+VFP RTNTEF+E++ P LKMRVWERGAG TLACGTGA
Sbjct: 180 ----DVAAISLETIGTLFEHHAVFPQRTNTEFIEVVRPDYLKMRVWERGAGITLACGTGA 235
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
CA VVA VL G +RR TV+LPGG L+IEW E D VYMTG AE VF G
Sbjct: 236 CATVVAGVLNGKCDRRATVELPGGCLEIEWSEIDQRVYMTGAAEQVFTG 284
>gi|416387993|ref|ZP_11685098.1| Diaminopimelate epimerase, partial [Crocosphaera watsonii WH 0003]
gi|357264527|gb|EHJ13409.1| Diaminopimelate epimerase, partial [Crocosphaera watsonii WH 0003]
Length = 278
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/284 (61%), Positives = 218/284 (76%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KY GLGNDFILVDNR+ T P ++PE+A KLCDR+FGIGADGVIFA+PG +DYTM
Sbjct: 1 MEFTKYQGLGNDFILVDNRHRTTPSLSPEEAVKLCDRHFGIGADGVIFALPGDENSDYTM 60
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEP+MCGNG+RC ARF+A+LE ++ ++S+ + T AG+I+P ++ +G+VKVDM
Sbjct: 61 RIFNSDGSEPQMCGNGIRCLARFLAKLEGIDTTEKSYRIQTLAGIIIPNLEAEGQVKVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+L+ ++ V+ L+V W VTCVSMGNPHC+TF V
Sbjct: 121 GTPFLLAKEIPTTLT-KAEEKVIDQSLEVGDQSWLVTCVSMGNPHCITFVED------VA 173
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
K+ L IGPKFEHH+VFP RTNTEF+E++ LKMRVWERGAG TLACGTGACA VVA
Sbjct: 174 KIPLETIGPKFEHHAVFPERTNTEFIEVVRRDYLKMRVWERGAGITLACGTGACASVVAG 233
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL GH +R CTV+LPGG L IEW ++DN +YMTGPAE VF G +
Sbjct: 234 VLTGHCDRLCTVELPGGCLTIEWSKKDNRLYMTGPAEEVFTGVI 277
>gi|172039059|ref|YP_001805560.1| diaminopimelate epimerase [Cyanothece sp. ATCC 51142]
gi|171700513|gb|ACB53494.1| diaminopimelate epimerase [Cyanothece sp. ATCC 51142]
Length = 290
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/285 (60%), Positives = 220/285 (77%), Gaps = 8/285 (2%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F KY GLGNDFILVDNR+S+ P ++P++A KLCDR+FGIGADGVIFA+PG + +DYT
Sbjct: 12 IMEFTKYQGLGNDFILVDNRHSSTPLLSPDEAVKLCDRHFGIGADGVIFALPGDDQSDYT 71
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVD 196
MRIFNSDGSEP+MCGNG+RC ARF+A+LE + +S+ + T AG+I+P ++++G+VKVD
Sbjct: 72 MRIFNSDGSEPQMCGNGIRCLARFLAKLEGVETVGKSYRIQTLAGIIIPRLEEEGQVKVD 131
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L A ++PT+L+ +++ V+ L+V G W+VTCVSMGNPHC+TF V
Sbjct: 132 MGNPFLLAKEIPTTLTKGEEK-VINQFLEVGGQSWSVTCVSMGNPHCITFVEN------V 184
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
+ L IGP FEHHSVFP RTNTEF+E++ LKMRVWERGAG TLACGTGACA VVA
Sbjct: 185 ATIPLETIGPMFEHHSVFPERTNTEFIEVVRSDYLKMRVWERGAGITLACGTGACASVVA 244
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL G+ +R CTV+LPGG L IEW E+DN +YMTGPAE VF G +
Sbjct: 245 GVLTGNCDRLCTVELPGGCLTIEWSEQDNRLYMTGPAEAVFTGVI 289
>gi|434392455|ref|YP_007127402.1| diaminopimelate epimerase [Gloeocapsa sp. PCC 7428]
gi|428264296|gb|AFZ30242.1| diaminopimelate epimerase [Gloeocapsa sp. PCC 7428]
Length = 281
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/284 (62%), Positives = 215/284 (75%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR S++P +TPEQA LCDR+FGIGADGVIFA+PG NGTDYTM
Sbjct: 3 IEFAKYHGLGNDFILIDNRLSSQPVVTPEQAIMLCDRHFGIGADGVIFALPGQNGTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELE-NLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A F+AE++ N +HT AG I P+I DG+VKVDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAAFVAEIDGNQQENSQKRIHTLAGTITPQIMSDGQVKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L AS++PT+L A ++Q V+ L+V G W+VTCVSMGNPHC+TF V
Sbjct: 123 GVPRLLASEIPTTLGA-ENQKVIDQPLEVAGQSWDVTCVSMGNPHCITFVE------DVA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L +IGP+FEHH+VFP RTNTEF++++ LKMRVWERGAGATLACGTGACA +VA
Sbjct: 176 VIPLEKIGPQFEHHAVFPQRTNTEFIQVVRRDYLKMRVWERGAGATLACGTGACAALVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL G +R TV+LPGG L IEW E D ++MTGPA+ VF G V
Sbjct: 236 VLTGRCDRLATVELPGGCLQIEWSEVDQRLWMTGPAQRVFTGVV 279
>gi|434403376|ref|YP_007146261.1| diaminopimelate epimerase [Cylindrospermum stagnale PCC 7417]
gi|428257631|gb|AFZ23581.1| diaminopimelate epimerase [Cylindrospermum stagnale PCC 7417]
Length = 279
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/284 (60%), Positives = 216/284 (76%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+S+ PR+TPEQA LCDR+FGIGA+GVIFA+PG TDYTM
Sbjct: 3 IEFTKYHGLGNDFILIDNRSSSTPRLTPEQAVNLCDRHFGIGANGVIFALPGTKDTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQS-FTVHTGAGLIVPEIQDDGKVKVDM 197
RI+NSDGSEPEMCGNG+RC A F+AELE ++ Q + +HT AG++ P++ +DG+++VDM
Sbjct: 63 RIYNSDGSEPEMCGNGIRCLAGFLAELEGMSRTQDRYRIHTLAGVMTPQLTEDGQIRVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+L+A D V+ L+V G W+VTCVSMGNPHC+TF V
Sbjct: 123 GLPHLLAGEIPTTLAA-ADAKVINQPLEVAGQSWDVTCVSMGNPHCITFVD------DVA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++L IGP+FEHH VFP RTNTEF++++S +KMRVWERGAG TLACGTGACA +VA
Sbjct: 176 AISLESIGPQFEHHPVFPQRTNTEFIQVVSRDYVKMRVWERGAGITLACGTGACAALVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL +RR V+LPGG L+IEW E D VYMTGPAE VF G +
Sbjct: 236 VLTEKCDRRAIVELPGGTLEIEWSEIDQRVYMTGPAERVFTGKI 279
>gi|354552657|ref|ZP_08971965.1| Diaminopimelate epimerase [Cyanothece sp. ATCC 51472]
gi|353555979|gb|EHC25367.1| Diaminopimelate epimerase [Cyanothece sp. ATCC 51472]
Length = 278
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/284 (60%), Positives = 220/284 (77%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KY GLGNDFILVDNR+S+ P ++P++A KLCDR+FGIGADGVIFA+PG + +DYTM
Sbjct: 1 MEFTKYQGLGNDFILVDNRHSSTPLLSPDEAVKLCDRHFGIGADGVIFALPGDDQSDYTM 60
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEP+MCGNG+RC ARF+A+LE + +S+ + T AG+I+P ++++G+VKVDM
Sbjct: 61 RIFNSDGSEPQMCGNGIRCLARFLAKLEGVETVGKSYRIQTLAGIIIPRLEEEGQVKVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+L+ +++ V+ L+V G W+VTCVSMGNPHC+TF V
Sbjct: 121 GNPFLLAKEIPTTLTKGEEK-VINQFLEVGGQSWSVTCVSMGNPHCITFVEN------VA 173
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L IGP FEHHSVFP RTNTEF+E++ LKMRVWERGAG TLACGTGACA VVA
Sbjct: 174 TIPLETIGPMFEHHSVFPERTNTEFIEVVRSDYLKMRVWERGAGITLACGTGACASVVAG 233
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL G+ +R CTV+LPGG L IEW E+DN +YMTGPAE VF G +
Sbjct: 234 VLTGNCDRLCTVELPGGCLTIEWSEQDNRLYMTGPAEAVFTGVI 277
>gi|428317181|ref|YP_007115063.1| diaminopimelate epimerase [Oscillatoria nigro-viridis PCC 7112]
gi|428240861|gb|AFZ06647.1| diaminopimelate epimerase [Oscillatoria nigro-viridis PCC 7112]
Length = 280
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/283 (61%), Positives = 212/283 (74%), Gaps = 7/283 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+S+EP ITPEQA LCDR+FGIGADGVIFA+PG NGTDYTM
Sbjct: 3 IEFAKYHGLGNDFILIDNRHSSEPVITPEQAVDLCDRHFGIGADGVIFALPGQNGTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RIFNSDGSEPEMCGNG+RC A+FIA+LE K + +HT AG I PE++ DG+VKVDMG
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAKFIADLEGSEAKTQYRIHTLAGAISPELRSDGQVKVDMG 122
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
P L A+++PT+L+A D V+ ++V W+VTCVSMGNPHC+TF V
Sbjct: 123 VPRLLAAEIPTTLAA-PDAKVIDVPIEVADKSWSVTCVSMGNPHCITFVE------DVAA 175
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
+ L +GP+FEH+ FP RTNTEF++++ +KMRVWERGAG TLACGTGACA VVA V
Sbjct: 176 VALETVGPQFEHNKAFPQRTNTEFIQVVRSDYVKMRVWERGAGVTLACGTGACAAVVAGV 235
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
L G +R V+LPGG L+IEW E +YMTGPA+ VF G +
Sbjct: 236 LVGKCDRATAVELPGGVLEIEWAEVSGRIYMTGPAQRVFTGCI 278
>gi|255079222|ref|XP_002503191.1| predicted protein [Micromonas sp. RCC299]
gi|226518457|gb|ACO64449.1| predicted protein [Micromonas sp. RCC299]
Length = 331
Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/290 (61%), Positives = 224/290 (77%), Gaps = 9/290 (3%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GV--NGTDYT 137
F KY GLGNDF+LVDNR+S+E +++ E+ A+LCDRNFGIGADGVIFAMP G+ DY+
Sbjct: 44 FYKYQGLGNDFVLVDNRDSSEIKLSSERCAQLCDRNFGIGADGVIFAMPPGLVQKDEDYS 103
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
MR++NSDG+EPEMCGNG+RC A F+A+++ + K ++ V T AGLI PE++ DG+V VDM
Sbjct: 104 MRMYNSDGTEPEMCGNGIRCLANFVAKMDGADPK-AYKVGTLAGLIQPEVRADGQVSVDM 162
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ----N 253
GEP L VP + A +D + V+++++VDG W VT VSMGNPHCVTFG KEG+
Sbjct: 163 GEPTLDPPKVPCTFEATQDGAAVRAKMEVDGETWLVTAVSMGNPHCVTFG-KEGECDEEG 221
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+KVD L+ GP FE H FPA+TNTEF E+++ + +KM VWERGAGATLACGTGACA
Sbjct: 222 IKVDSFALSHYGPMFEKHPAFPAKTNTEFTEVVNRNYVKMHVWERGAGATLACGTGACAT 281
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VVAAVLEG ER+CTV+LPGGPL+IEW+E DN V MTGPAE+VF G V +
Sbjct: 282 VVAAVLEGRTERKCTVELPGGPLEIEWRESDNRVIMTGPAELVFDGVVAV 331
>gi|119510990|ref|ZP_01630111.1| diaminopimelate epimerase [Nodularia spumigena CCY9414]
gi|119464335|gb|EAW45251.1| diaminopimelate epimerase [Nodularia spumigena CCY9414]
Length = 279
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 175/284 (61%), Positives = 212/284 (74%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFILVDNR S+ P +TPEQA +LCDR+FGIGADGVIFA+PG NG DYTM
Sbjct: 3 IEFTKYHGLGNDFILVDNRASSLPVLTPEQAIQLCDRHFGIGADGVIFALPGENGADYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC RFIA+LE + K S+ +HT AG+I P++ DG+VKVDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLGRFIADLEGESRNKDSYRIHTLAGMITPQLMADGQVKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+L + V+ L+V G W VTCVSMGNPHC+TF + V
Sbjct: 123 GLPRLLAGEIPTTL-GTAETKVINQPLEVAGQTWEVTCVSMGNPHCITFVS------DVA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L IGP+FEHH FP R NTEF++++S +KMRVWERGAG TLACGTGACA +VA
Sbjct: 176 AIPLEIIGPQFEHHPAFPQRINTEFIQVVSRDYVKMRVWERGAGITLACGTGACASLVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL G+ +R TV+LPGGPL IEW E D +YMTGPA+ VF G +
Sbjct: 236 VLTGNCDRIATVELPGGPLQIEWSEIDQRIYMTGPAQKVFTGQL 279
>gi|427739103|ref|YP_007058647.1| diaminopimelate epimerase [Rivularia sp. PCC 7116]
gi|427374144|gb|AFY58100.1| diaminopimelate epimerase [Rivularia sp. PCC 7116]
Length = 279
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 172/282 (60%), Positives = 212/282 (75%), Gaps = 8/282 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KY GLGNDFIL+DNR+ EP +TP+ A KLCDR+FGIGADGVIFA+PG NGTDYTM
Sbjct: 3 IDFTKYQGLGNDFILIDNRSKPEPAVTPQDAIKLCDRHFGIGADGVIFALPGENGTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELE-NLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A F+AELE + +++HT G I P++ DG+VKVDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCMAAFLAELEGDAKTSDKYSIHTLGGTITPQLMSDGQVKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+L A + + VV ++V G W+VTCV+MGNPHC+TF V
Sbjct: 123 GTPRLTAGEIPTTL-AGESEKVVNQTMEVAGKSWDVTCVNMGNPHCITFVE------DVA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L +IGP+FE+HSVFP R NTEF++++S LKMRVWERGAG TLACGTGACA +VA
Sbjct: 176 AIELEKIGPQFENHSVFPERINTEFIQVVSSDYLKMRVWERGAGITLACGTGACASLVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VL G +R+ T++LPGGPL IEW E D +YMTGPAE VF G
Sbjct: 236 VLTGKCDRKATIELPGGPLLIEWSEIDQRIYMTGPAEKVFTG 277
>gi|427705593|ref|YP_007047970.1| diaminopimelate epimerase [Nostoc sp. PCC 7107]
gi|427358098|gb|AFY40820.1| diaminopimelate epimerase [Nostoc sp. PCC 7107]
Length = 279
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 177/283 (62%), Positives = 213/283 (75%), Gaps = 8/283 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR S P +TPE+A + CDR+FGIGADGVIFA+PG NGTDYTM
Sbjct: 3 IEFTKYHGLGNDFILIDNRASASPLLTPEKAIEWCDRHFGIGADGVIFALPGKNGTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ-SFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A F+A+LE ++ Q + +HT AG I P++ DG++KVDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAAFLADLEGISRTQDKYRIHTLAGTITPQLTPDGQIKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+L A D V+ L+V G W VTCVSMGNPHC+TF K+ V
Sbjct: 123 GLPRLLAGEIPTTLGA-PDAKVINQPLEVAGQTWEVTCVSMGNPHCITF-VKD-----VA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L IGPKFEHH VFP RTNTEF++++S LKMRVWERGAG TLACGTGACA +VA
Sbjct: 176 TIPLETIGPKFEHHPVFPQRTNTEFIQVVSRDYLKMRVWERGAGITLACGTGACASLVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
VL G +R TV+LPGG L+IEW E D +YMTGPAE VF G+
Sbjct: 236 VLTGKCDRLATVELPGGCLEIEWSEIDERIYMTGPAERVFKGT 278
>gi|414076914|ref|YP_006996232.1| diaminopimelate epimerase [Anabaena sp. 90]
gi|413970330|gb|AFW94419.1| diaminopimelate epimerase [Anabaena sp. 90]
Length = 279
Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 175/283 (61%), Positives = 217/283 (76%), Gaps = 8/283 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+S P +TPE+A + CDR+FGIGADGVIFA+PG NGTDYTM
Sbjct: 3 IEFTKYHGLGNDFILIDNRSSLTPVLTPEKAIQWCDRHFGIGADGVIFALPGQNGTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A F+ ELE ++ K + +HT AG+I P++ D+G+VKVDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAVFLTELEGISRTKDKYHIHTLAGVISPQLTDEGQVKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP L A ++PT+LS + Q V+ L++ W+VTCVSMGNPHC+TF V
Sbjct: 123 GEPRLLAGEIPTTLSPTEFQ-VINQPLELADKTWDVTCVSMGNPHCITFVE------DVA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++L IGPKFE+H VFP +TNTEF+EI++ + LKMRVWERGAG TLACGTGACA +VA
Sbjct: 176 AIDLKSIGPKFENHPVFPKKTNTEFIEIVNRNYLKMRVWERGAGITLACGTGACASLVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
VL +R T++LPGGPL+IEW E DN +YMTGPAE VF G
Sbjct: 236 VLNDLCDRIATIELPGGPLEIEWSELDNRIYMTGPAERVFTGK 278
>gi|334117004|ref|ZP_08491096.1| Diaminopimelate epimerase [Microcoleus vaginatus FGP-2]
gi|333461824|gb|EGK90429.1| Diaminopimelate epimerase [Microcoleus vaginatus FGP-2]
Length = 280
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 172/283 (60%), Positives = 211/283 (74%), Gaps = 7/283 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+S+EP ITPEQA LCDR+FGIGADGVIFA+PG N TDYTM
Sbjct: 3 IEFAKYHGLGNDFILIDNRHSSEPVITPEQAVDLCDRHFGIGADGVIFALPGQNDTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RIFNSDGSEPEMCGNG+RC A+FIA+LE K + +HT AG+I PE++ DG+VKVDMG
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAKFIADLEGSEAKTQYRLHTLAGVITPELRSDGQVKVDMG 122
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
P L A+++PT+L+A D + ++V W+VTCVSMGNPHC+TF V
Sbjct: 123 VPRLLAAEIPTTLAA-ADAKAIDVPIEVADKSWSVTCVSMGNPHCITFVD------DVSA 175
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
+ L +GP+FEH+ FP RTNTEF+E++ +KMRVWERGAG TLACGTGACA VVA V
Sbjct: 176 VALETVGPQFEHNKAFPQRTNTEFIEVVRSDYVKMRVWERGAGVTLACGTGACAAVVAGV 235
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
L G +R V+LPGG L+IEW E +YMTGPA+ VF G +
Sbjct: 236 LVGKCDRATAVELPGGVLEIEWAEVSGRIYMTGPAQRVFTGCI 278
>gi|119483380|ref|ZP_01618794.1| diaminopimelate epimerase [Lyngbya sp. PCC 8106]
gi|119458147|gb|EAW39269.1| diaminopimelate epimerase [Lyngbya sp. PCC 8106]
Length = 284
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 179/289 (61%), Positives = 215/289 (74%), Gaps = 15/289 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KY GLGNDFIL+DNR+ +EP ITPEQA ++CDRNFGIGADGVIFA+PG + TDYTM
Sbjct: 3 IEFTKYQGLGNDFILIDNRHQSEPLITPEQAMQMCDRNFGIGADGVIFALPGTSNTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGK-------QSFTVHTGAGLIVPEIQDDG 191
RIFNSD SEP+MCGNG+RC A+FIA+LE+ +GK S+ + T AG+I PEI DG
Sbjct: 63 RIFNSDSSEPQMCGNGIRCLAKFIADLEHRDGKINQIPSSVSYKIDTLAGVITPEILADG 122
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
+VKVDMG+P L A ++PT+L+ D+ VV L V W VTCVSMGNPHC+TF
Sbjct: 123 QVKVDMGQPRLLAVEIPTTLT-KADEKVVNVPLSVAEQSWKVTCVSMGNPHCITFVE--- 178
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
V + LAEIGP+FEHH FP RTNTEF+++I P LKMRVWERGAGATLACGTGAC
Sbjct: 179 ---DVAAIPLAEIGPQFEHHPAFPERTNTEFIQVIKPDYLKMRVWERGAGATLACGTGAC 235
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
AVVVA VL G+ +R TV+LPGG L IEW + +YM+GPAE VF G
Sbjct: 236 AVVVAGVLTGNCDRSVTVELPGGNLMIEWSASE-RLYMSGPAERVFTGQ 283
>gi|390440948|ref|ZP_10229137.1| Diaminopimelate epimerase [Microcystis sp. T1-4]
gi|389835718|emb|CCI33263.1| Diaminopimelate epimerase [Microcystis sp. T1-4]
Length = 281
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 180/287 (62%), Positives = 214/287 (74%), Gaps = 14/287 (4%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F KY GLGNDFIL+DNR+S EP ITPE A +CDR+FGIGADGVIFA+PG TDYTMRI
Sbjct: 5 FTKYQGLGNDFILIDNRHSPEPLITPEMAVAMCDRHFGIGADGVIFALPGQAVTDYTMRI 64
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
FNSDGSEPEMCGNG+RC A+FIA LE N +++ +HT AG I+P ++ + +V VDMG
Sbjct: 65 FNSDGSEPEMCGNGIRCLAQFIARLEANNAIGRTYRIHTLAGTIIPRLEANEQVTVDMGP 124
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P L AS++PT+L ++ ++ L+V+G W VTCVSMGNPHCVTF VD L
Sbjct: 125 PQLLASEIPTTLVEGSEK-ILAVPLEVEGKDWLVTCVSMGNPHCVTF---------VDDL 174
Query: 260 N---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
L IGPKFEHH VFP RTN EFVE+I+P +KMRVWERGAG TLACGTGACAVVVA
Sbjct: 175 ASIPLETIGPKFEHHPVFPQRTNVEFVEVIAPDYMKMRVWERGAGITLACGTGACAVVVA 234
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A+L G +RRCTV+LPGG L I W + DN VYMTGPA+ VF G L+
Sbjct: 235 ALLTGKCDRRCTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEGIYLV 281
>gi|298490598|ref|YP_003720775.1| diaminopimelate epimerase ['Nostoc azollae' 0708]
gi|298232516|gb|ADI63652.1| diaminopimelate epimerase ['Nostoc azollae' 0708]
Length = 279
Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 175/283 (61%), Positives = 210/283 (74%), Gaps = 8/283 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+S P ITP+QA K CDR+FGIGADGVIFA+PG N TDYTM
Sbjct: 3 IEFTKYHGLGNDFILIDNRSSLTPVITPQQAVKWCDRHFGIGADGVIFALPGQNDTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A F+ ELE ++ K + +HT AG+I P++ DG+VKVDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAAFLTELEGISRTKDYYRIHTLAGVITPQLTHDGQVKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+ A D V+ L+V G W+VTCVSMGNPHC+TF V
Sbjct: 123 GLPRLLAQEIPTTF-APADNKVINLPLEVAGTTWDVTCVSMGNPHCITFIE------DVA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L +IGPKFEHH FP R N EF+EI++ + LKMRVWERGAG TLACGTGACAV+VA
Sbjct: 176 AIPLEKIGPKFEHHPAFPQRINLEFIEIVNRNYLKMRVWERGAGITLACGTGACAVLVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
VL +R T++LPGGPL+IEW E D +YMTGPAE VF G
Sbjct: 236 VLNDKCDRTATIELPGGPLEIEWSEIDQRIYMTGPAERVFIGK 278
>gi|126657883|ref|ZP_01729036.1| diaminopimelate epimerase [Cyanothece sp. CCY0110]
gi|126620823|gb|EAZ91539.1| diaminopimelate epimerase [Cyanothece sp. CCY0110]
Length = 286
Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 172/282 (60%), Positives = 216/282 (76%), Gaps = 8/282 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KY GLGNDFILVDNR++ P ++ ++A KLCDR+FGIGADGVIFA+PG TDYTM
Sbjct: 1 MEFTKYQGLGNDFILVDNRHNAIPLLSSKEAIKLCDRHFGIGADGVIFALPGDENTDYTM 60
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEP+MCGNG+RC ARF+A+LE + +S+ + T AG+++P +++DG+VKVDM
Sbjct: 61 RIFNSDGSEPQMCGNGIRCLARFLAKLEGIETVGKSYRIQTLAGIMIPRLEEDGQVKVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+L+ +++ VV L+V G W+VTCVSMGNPHC+TF V
Sbjct: 121 GNPFLLAKEIPTTLTKGEEK-VVNQFLEVGGQSWSVTCVSMGNPHCITFVDN------VA 173
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L IGP FEHH+VFP RTNTEF+E++ LKMRVWERGAG TLACGTGACA VVA
Sbjct: 174 TIPLETIGPMFEHHAVFPERTNTEFIEVVRSDYLKMRVWERGAGITLACGTGACASVVAG 233
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VL G+ +R CTV+LPGG L IEW E+DN +YMTGPAE VF G
Sbjct: 234 VLTGNCDRLCTVELPGGCLTIEWSEQDNRLYMTGPAEAVFTG 275
>gi|186685304|ref|YP_001868500.1| diaminopimelate epimerase [Nostoc punctiforme PCC 73102]
gi|229813236|sp|B2J3A7.1|DAPF_NOSP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|186467756|gb|ACC83557.1| diaminopimelate epimerase [Nostoc punctiforme PCC 73102]
Length = 279
Score = 366 bits (940), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 175/284 (61%), Positives = 211/284 (74%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+S+ P +TPEQA +LCDR+FGIGADGVIFA+PG NGTDYTM
Sbjct: 3 IEFTKYHGLGNDFILIDNRSSSLPVLTPEQAIQLCDRHFGIGADGVIFALPGENGTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A F+A+LE + K S+ +HT G++ P++ DG VKVDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAGFLADLEGQSRNKDSYRIHTLGGVMTPQLLSDGLVKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+L A ++ V+ L+V G W VTCV+MGNPHC+TF V
Sbjct: 123 GLPRLLAGEIPTTL-APVEEKVISVPLEVAGKTWEVTCVNMGNPHCITFVE------DVA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L IGPKFEHH FP R NTEF++++ LKMRVWERGAG TLACGTGACA +VA
Sbjct: 176 AIELESIGPKFEHHPAFPQRINTEFIQVVRRDYLKMRVWERGAGITLACGTGACASLVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL G +R TV+LPGGPL IEW E D VYMTGPAE VF G +
Sbjct: 236 VLTGKCDRTATVELPGGPLQIEWSEIDQRVYMTGPAERVFTGKL 279
>gi|428201777|ref|YP_007080366.1| diaminopimelate epimerase [Pleurocapsa sp. PCC 7327]
gi|427979209|gb|AFY76809.1| diaminopimelate epimerase [Pleurocapsa sp. PCC 7327]
Length = 281
Score = 366 bits (940), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 174/286 (60%), Positives = 210/286 (73%), Gaps = 8/286 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+ +EP I+PE A ++CDR+FGIGADGVIFA+PG +GTDY M
Sbjct: 3 IEFTKYHGLGNDFILLDNRHRSEPLISPEVAVQMCDRHFGIGADGVIFALPGQDGTDYAM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGK-QSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC ARFIA+LE +S+ +HT AG+I P ++ D +V VDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLARFIAQLEGTEAAGKSYRIHTLAGVITPRLEGDEQVTVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A+ +PT+L N D+ V++ L+V G W VTCVSMGNPHC+TF D
Sbjct: 123 GTPQLTAAQIPTTL-GNPDEKVIEQSLEVAGKSWLVTCVSMGNPHCITFVE------NTD 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L IG +FE H VFP RTNTEF+++I P LKMRVWERGAGATLACGTGACA VVA
Sbjct: 176 AIALETIGSQFERHPVFPQRTNTEFIQVIRPDYLKMRVWERGAGATLACGTGACASVVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VL + R CTV+LPGG L I W E D VYMTG A+ VF GS +
Sbjct: 236 VLTRRSNRLCTVELPGGCLKIHWSETDGRVYMTGSAKRVFSGSYFI 281
>gi|422302776|ref|ZP_16390135.1| Diaminopimelate epimerase [Microcystis aeruginosa PCC 9806]
gi|389787932|emb|CCI16780.1| Diaminopimelate epimerase [Microcystis aeruginosa PCC 9806]
Length = 301
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 178/283 (62%), Positives = 211/283 (74%), Gaps = 14/283 (4%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F KY GLGNDFIL+DNR+S EP ITPE A +CDR+FGIGADGVIFA+PG TDYTMRI
Sbjct: 25 FTKYQGLGNDFILIDNRHSPEPLITPEMAVAMCDRHFGIGADGVIFALPGQAATDYTMRI 84
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
FNSDGSEPEMCGNG+RC A+FIA LE N +++ +HT AG I+P ++ + +V VDMG
Sbjct: 85 FNSDGSEPEMCGNGIRCLAQFIARLEANNTIGRTYRIHTLAGTIIPRLEANEQVTVDMGP 144
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P L AS++PT+L ++ V+ L+V+G W VTCVSMGNPHCVTF VD L
Sbjct: 145 PQLLASEIPTTLVKGSEK-VLAVPLEVEGKDWLVTCVSMGNPHCVTF---------VDDL 194
Query: 260 N---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
L IGPKFEHH VFP RTN EFVE+++ +KMRVWERGAG TLACGTGACAVVVA
Sbjct: 195 ASIPLETIGPKFEHHPVFPQRTNVEFVEVVASDYMKMRVWERGAGITLACGTGACAVVVA 254
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
A+L G +RRCTV+LPGG L I W + DN VYMTGPA+ VF G
Sbjct: 255 ALLTGKCDRRCTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEG 297
>gi|443328100|ref|ZP_21056703.1| diaminopimelate epimerase [Xenococcus sp. PCC 7305]
gi|442792297|gb|ELS01781.1| diaminopimelate epimerase [Xenococcus sp. PCC 7305]
Length = 280
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 173/282 (61%), Positives = 212/282 (75%), Gaps = 10/282 (3%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F KY GLGNDFIL+DNR+S+E +TPEQA ++CDR+FGIGADGVIF +PG GTDYTMRI
Sbjct: 5 FSKYQGLGNDFILIDNRHSSETIVTPEQAIRICDRHFGIGADGVIFVLPGQEGTDYTMRI 64
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNGK--QSFTVHTGAGLIVPEIQDDGKVKVDMG 198
+NSDGSEPEMCGNG+RC A+FIA LE + GK +++ +HT AG+I P++ ++G VKVDMG
Sbjct: 65 YNSDGSEPEMCGNGIRCLAKFIANLEGI-GKVNKTYRIHTLAGVISPQLLENGLVKVDMG 123
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
+P L A ++PT+L A D+ VV + V W VTCVSMGNPHC+TF D
Sbjct: 124 QPFLLAGEIPTTLVA-ADEKVVNHTITVAEQAWAVTCVSMGNPHCITFVEDS------DA 176
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
+ L +IGP FEH+S FP R NTEF+++I P +KMRVWERGAG TLACGTGACA VVA V
Sbjct: 177 IALEQIGPLFEHYSAFPQRINTEFIQVIKPDYIKMRVWERGAGITLACGTGACASVVAGV 236
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
L +R CTV+LPGG L+I W EDN VYMTGPAE+ F GS
Sbjct: 237 LNNQCDRLCTVELPGGFLEINWSSEDNRVYMTGPAELSFIGS 278
>gi|300864689|ref|ZP_07109546.1| Diaminopimelate epimerase [Oscillatoria sp. PCC 6506]
gi|300337350|emb|CBN54694.1| Diaminopimelate epimerase [Oscillatoria sp. PCC 6506]
Length = 278
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 172/283 (60%), Positives = 211/283 (74%), Gaps = 7/283 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+ +EP +T +QA +LCDR+FGIG DGVIFA+PG NGTDYTM
Sbjct: 3 IEFTKYHGLGNDFILIDNRHQSEPILTLQQAEELCDRHFGIGGDGVIFALPGQNGTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RI+NSDGSE EMCGNG+RC A+FIA+LE +N K + + T AG++ PE+ DG+VKVDMG
Sbjct: 63 RIYNSDGSEAEMCGNGIRCLAKFIADLEGVNAKTQYRIDTLAGVMTPELLADGQVKVDMG 122
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
P L A+++PT+L + D+ VV+ L+V G W VTCVSMGNPHC+TF V
Sbjct: 123 IPRLLAAEIPTTLE-SPDRKVVELPLEVAGQSWLVTCVSMGNPHCITFVE------DVSA 175
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
+ L IGP FEHH+VFP RTNTEF++II +KMRVWERGAG TLACGTGACA VVA V
Sbjct: 176 IALETIGPLFEHHAVFPQRTNTEFIQIIRRDYVKMRVWERGAGVTLACGTGACASVVAGV 235
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
L G +R V+LPGG L IEW + D +YMTGPA VF G +
Sbjct: 236 LAGKCDRIAAVELPGGILQIEWSQVDQRLYMTGPAVQVFAGKI 278
>gi|428297181|ref|YP_007135487.1| diaminopimelate epimerase [Calothrix sp. PCC 6303]
gi|428233725|gb|AFY99514.1| diaminopimelate epimerase [Calothrix sp. PCC 6303]
Length = 279
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 173/284 (60%), Positives = 213/284 (75%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR++ P +TP+QA +LCDR+FGIGADGVIFA+P N TDY M
Sbjct: 3 IKFTKYHGLGNDFILIDNRSTKTPIVTPQQAVELCDRHFGIGADGVIFALPAENDTDYAM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A F+A+LE N + +HT AG+I P++ +G ++VDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAAFLADLEGGNRTSDKYRIHTLAGVITPQLMPEGLIRVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP L A ++PT+L A ++ VV+ L+V G W VTCVSMGNPHC+TF VD
Sbjct: 123 GEPHLLAGEIPTTL-ATAEEKVVEQTLEVAGKTWQVTCVSMGNPHCITFVD------DVD 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
L LAEIGP+FE H VFP +TNTEF++++ LKMRVWERGAG TLACGTGACA +VA
Sbjct: 176 ALALAEIGPQFETHPVFPKKTNTEFIQVVERDYLKMRVWERGAGITLACGTGACASLVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL G +R TV+LPGG L+IEW E D VYM+GPAE VF G+V
Sbjct: 236 VLTGKCDRIATVELPGGCLEIEWSEIDGRVYMSGPAERVFTGTV 279
>gi|440680808|ref|YP_007155603.1| diaminopimelate epimerase [Anabaena cylindrica PCC 7122]
gi|428677927|gb|AFZ56693.1| diaminopimelate epimerase [Anabaena cylindrica PCC 7122]
Length = 279
Score = 363 bits (933), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 171/283 (60%), Positives = 211/283 (74%), Gaps = 8/283 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+++ P I PE+A K CDR+FGIGADGVIFA+PG NG DYTM
Sbjct: 3 IEFTKYHGLGNDFILIDNRSASTPVIKPEEAVKWCDRHFGIGADGVIFALPGENGADYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A F+ ELE ++ K + +HT AG++ P++ DDG++KVDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAAFLTELEGVSRTKDYYRIHTLAGVMTPQLTDDGQIKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+L+A D V+ L+V W+VTCVSMGNPHC+TF V
Sbjct: 123 GLPRLLAQEIPTTLAA-ADSKVINQPLEVAEKTWDVTCVSMGNPHCITFVE------DVA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L IGPKFEHH FP R NTEF+E+++ + LKMRVWERGAG TLACGTGACAV+VA
Sbjct: 176 AIPLETIGPKFEHHPAFPQRINTEFIEVVNRNYLKMRVWERGAGITLACGTGACAVLVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
VL +R T++LPGG L+IEW E D +YMTGPAE VF G
Sbjct: 236 VLNDLCDRTATIELPGGLLEIEWSEVDQRIYMTGPAERVFTGK 278
>gi|425443925|ref|ZP_18823988.1| Diaminopimelate epimerase [Microcystis aeruginosa PCC 9443]
gi|389733008|emb|CCI03162.1| Diaminopimelate epimerase [Microcystis aeruginosa PCC 9443]
Length = 301
Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 178/284 (62%), Positives = 211/284 (74%), Gaps = 16/284 (5%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F KY GLGNDFIL+DNR+S EP ITPE A +CDR+FGIGADGVIFA+PG TDYTMRI
Sbjct: 25 FTKYQGLGNDFILIDNRHSPEPLITPEIAVAMCDRHFGIGADGVIFALPGQAATDYTMRI 84
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELE--NLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
FNSDGSEPEMCGNG+RC A+FIA LE N+ G+ ++ +HT AG I+P ++ + +V VDMG
Sbjct: 85 FNSDGSEPEMCGNGIRCLAQFIARLEANNVIGR-TYRIHTLAGTIIPRLEANEQVTVDMG 143
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
P L S++PT+L ++ V+ L+V+G W VTCVSMGNPHCVTF VD
Sbjct: 144 PPQLLGSEIPTTLVEGSEK-VLAVPLEVEGKDWLVTCVSMGNPHCVTF---------VDD 193
Query: 259 LN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
L L IGPKFEHH FP RTN EFVE+I+P +KMRVWERGAG TLACGTGACAVVV
Sbjct: 194 LASIPLETIGPKFEHHPAFPQRTNVEFVEVIAPDYMKMRVWERGAGITLACGTGACAVVV 253
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
AA+L G +R CTV+LPGG L I W + DN VYMTGPA+ VF G
Sbjct: 254 AALLTGKCDRSCTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEG 297
>gi|425470170|ref|ZP_18849040.1| Diaminopimelate epimerase [Microcystis aeruginosa PCC 9701]
gi|389884282|emb|CCI35405.1| Diaminopimelate epimerase [Microcystis aeruginosa PCC 9701]
Length = 301
Score = 363 bits (932), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 178/283 (62%), Positives = 209/283 (73%), Gaps = 14/283 (4%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F KY GLGNDFIL+DNR+S EP IT E A +CDR+FGIGADGVIFA+PG TDYTMRI
Sbjct: 25 FTKYQGLGNDFILIDNRHSPEPLITAEIAVAMCDRHFGIGADGVIFALPGQAATDYTMRI 84
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
FNSDGSEPEMCGNG+RC A+FIA LE N +++ +HT AG I+P ++ + +V VDMG
Sbjct: 85 FNSDGSEPEMCGNGIRCLAQFIARLEANNTIGRTYRIHTLAGTIIPRLEANEQVTVDMGP 144
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P L S++PT+L N + V+ L+V+G W VTCVSMGNPHCVTF VD L
Sbjct: 145 PQLLGSEIPTTL-VNGSEKVLAVPLEVEGKDWLVTCVSMGNPHCVTF---------VDDL 194
Query: 260 N---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
L IGPKFEHH VFP RTN EFVE+I+P +KMRVWERGAG TLACGTGACAVVVA
Sbjct: 195 ASIPLETIGPKFEHHPVFPQRTNVEFVEVIAPDYMKMRVWERGAGITLACGTGACAVVVA 254
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
A+L G +R CTV+LPGG L I W + DN VYMTGPA+ VF G
Sbjct: 255 ALLTGKCDRICTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEG 297
>gi|166368685|ref|YP_001660958.1| diaminopimelate epimerase [Microcystis aeruginosa NIES-843]
gi|189082835|sp|B0JJ58.1|DAPF_MICAN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|166091058|dbj|BAG05766.1| diaminopimelate epimerase [Microcystis aeruginosa NIES-843]
Length = 281
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 175/280 (62%), Positives = 209/280 (74%), Gaps = 8/280 (2%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F KY GLGNDFIL+DNR+S EP IT E A +CDR+FGIGADGVIFA+PG TDYTMRI
Sbjct: 5 FTKYQGLGNDFILIDNRHSPEPLITAEMAVAMCDRHFGIGADGVIFALPGQAETDYTMRI 64
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
FNSDGSEPEMCGNG+RC A+FIA LE N +++ +HT AG I+P ++ + +V VDMG
Sbjct: 65 FNSDGSEPEMCGNGIRCLAQFIARLEANNAIGRTYRIHTLAGTIIPRLEANEQVTVDMGP 124
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P L S++PT+L ++ V+ L+V+G W VTCVSMGNPHCVTF + +
Sbjct: 125 PQLLGSEIPTTLVKGSEK-VLAVPLEVEGKDWLVTCVSMGNPHCVTFVGD------LASI 177
Query: 260 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVL 319
L IGPKFEHH VFP RTN EFVE+I+P +KMRVWERGAG TLACGTGACAVVVAA+L
Sbjct: 178 PLETIGPKFEHHPVFPQRTNVEFVEVIAPDYMKMRVWERGAGITLACGTGACAVVVAALL 237
Query: 320 EGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
G +RRCTV+LPGG L I W + DN VYMTGPA+ VF G
Sbjct: 238 TGKCDRRCTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEG 277
>gi|434388007|ref|YP_007098618.1| diaminopimelate epimerase [Chamaesiphon minutus PCC 6605]
gi|428018997|gb|AFY95091.1| diaminopimelate epimerase [Chamaesiphon minutus PCC 6605]
Length = 282
Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 171/282 (60%), Positives = 212/282 (75%), Gaps = 8/282 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KY GLGNDFIL+DNR+S P I P A CDR+FGIG DGVIF +PG NG DYTM
Sbjct: 3 IAFSKYQGLGNDFILIDNRHSDIPVIEPAAAIIWCDRHFGIGGDGVIFVLPGQNGADYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELE-NLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A+FIA LE ++ ++ ++T AG+I P++ DG+V+VDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCMAKFIAALEGKVDTAVTYKIYTLAGIITPKVLLDGQVEVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP L ++++PT+L+A++++ + +S ++VDG W VTCVSMGNPHC+TF
Sbjct: 123 GEPRLLSAEIPTTLNASQEKVIGRS-IEVDGKTWTVTCVSMGNPHCMTFVED------AS 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L IGPKFEHH FP RTNTEFV++I P +KMRVWERGAG TLACGTGACA VVA
Sbjct: 176 SIPLETIGPKFEHHPAFPQRTNTEFVQVIRPDYVKMRVWERGAGITLACGTGACATVVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VL G +R CTV+LPGG L IEW + DN VYMTGPAE+VF G
Sbjct: 236 VLTGKCDRLCTVELPGGGLQIEWSQADNRVYMTGPAELVFKG 277
>gi|440752881|ref|ZP_20932084.1| diaminopimelate epimerase [Microcystis aeruginosa TAIHU98]
gi|440177374|gb|ELP56647.1| diaminopimelate epimerase [Microcystis aeruginosa TAIHU98]
Length = 281
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 176/283 (62%), Positives = 208/283 (73%), Gaps = 14/283 (4%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F KY GLGNDFIL+DNR+S EP ITPE A +CDR+FGIGADGVIF +PG TDYTMRI
Sbjct: 5 FTKYQGLGNDFILIDNRHSPEPLITPEMAVAMCDRHFGIGADGVIFVLPGQAATDYTMRI 64
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
FNSDGSEPEMCGNG+RC A+FIA LE N +++ +HT AG I+P ++ + +V VDMG
Sbjct: 65 FNSDGSEPEMCGNGIRCLAQFIARLEANNAIGRTYRIHTLAGTIIPRLEANEQVTVDMGP 124
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P L S++PT+L ++ V+ L+V+G W +TCVSMGNPHCVTF VD L
Sbjct: 125 PQLLGSEIPTTLVKGSEK-VLAVPLEVEGKDWLITCVSMGNPHCVTF---------VDDL 174
Query: 260 N---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
L IGPKFEHH VFP RTN EFVE+I P +KMRVWERGAG TLACGTGACAVVVA
Sbjct: 175 ASIPLETIGPKFEHHPVFPQRTNVEFVEVIGPDYMKMRVWERGAGITLACGTGACAVVVA 234
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
A+L G +R CTV+LPGG L I W + DN VYMTGPA+ VF G
Sbjct: 235 ALLTGKCDRHCTVELPGGCLQIHWSDTDNRVYMTGPAKAVFEG 277
>gi|425451887|ref|ZP_18831706.1| Diaminopimelate epimerase [Microcystis aeruginosa PCC 7941]
gi|389766583|emb|CCI07832.1| Diaminopimelate epimerase [Microcystis aeruginosa PCC 7941]
Length = 281
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 176/283 (62%), Positives = 208/283 (73%), Gaps = 14/283 (4%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F KY GLGNDFIL+DNR+S EP ITPE A +CDR+FGIGADGVIF +PG TDYTMRI
Sbjct: 5 FTKYQGLGNDFILIDNRHSPEPLITPEIAVAMCDRHFGIGADGVIFVLPGQAATDYTMRI 64
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
FNSDGSEPEMCGNG+RC A+FIA LE N +++ +HT AG I+P ++ + +V VDMG
Sbjct: 65 FNSDGSEPEMCGNGIRCLAQFIARLEANNAIGRTYRIHTLAGTIIPRLEANEQVTVDMGP 124
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P L S++PT+L ++ V+ L+V+G W +TCVSMGNPHCVTF VD L
Sbjct: 125 PQLLGSEIPTTLVKGSEK-VLAVPLEVEGKDWLITCVSMGNPHCVTF---------VDDL 174
Query: 260 N---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
L IGPKFEHH VFP RTN EFVE+I P +KMRVWERGAG TLACGTGACAVVVA
Sbjct: 175 ASIPLETIGPKFEHHRVFPQRTNVEFVEVIGPDYMKMRVWERGAGITLACGTGACAVVVA 234
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
A+L G +R CTV+LPGG L I W + DN VYMTGPA+ VF G
Sbjct: 235 ALLTGKCDRHCTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEG 277
>gi|409989834|ref|ZP_11273318.1| diaminopimelate epimerase [Arthrospira platensis str. Paraca]
gi|409939303|gb|EKN80483.1| diaminopimelate epimerase [Arthrospira platensis str. Paraca]
Length = 286
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 171/284 (60%), Positives = 209/284 (73%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+ +EP T +QA ++CDR+FGIGADGVIFA+PG +DYTM
Sbjct: 3 IEFTKYHGLGNDFILIDNRHQSEPICTQKQAVQMCDRHFGIGADGVIFALPGDGASDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ-SFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A+FIAELE G ++ ++T AG+I P++ DG+VKVDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAKFIAELEGKTGTAIAYKINTAAGVICPQLLTDGQVKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A+++PT+LS N V+ L V G W+VTCVSMGNPHC+TF V
Sbjct: 123 GLPRLLAAEIPTTLSENS-LKVIDVPLQVAGQPWSVTCVSMGNPHCITFVD------DVA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L EIGP FEHH FP RTNTEF+E++ P +KMRVWERGAG TLACGTGACA VVA
Sbjct: 176 SVPLTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL +R+ TV+LPGG L IEW D +YMTGPA+ VF G +
Sbjct: 236 VLTQRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQAVFQGQL 279
>gi|425455757|ref|ZP_18835468.1| Diaminopimelate epimerase [Microcystis aeruginosa PCC 9807]
gi|389803286|emb|CCI17764.1| Diaminopimelate epimerase [Microcystis aeruginosa PCC 9807]
Length = 281
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 176/283 (62%), Positives = 209/283 (73%), Gaps = 14/283 (4%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F KY GLGNDFIL+DNR+S EP IT E A +CDR+FGIGADGVIFA+PG TDYTMRI
Sbjct: 5 FTKYQGLGNDFILIDNRHSPEPLITAEMAVAMCDRHFGIGADGVIFALPGQAATDYTMRI 64
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
FNSDGSEPEMCGNG+RC A+FIA LE N +++ +HT AG I+P ++ + +V VDMG
Sbjct: 65 FNSDGSEPEMCGNGIRCLAQFIARLEANNAIGRTYRIHTLAGTIIPRLEANEQVTVDMGP 124
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P L S++PT+L ++ ++ L+V+G W VTCVSMGNPHCVTF VD L
Sbjct: 125 PQLLGSEIPTTLVEGSEK-ILAVPLEVEGKDWLVTCVSMGNPHCVTF---------VDDL 174
Query: 260 N---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
L IGPKFEHH VFP RTN EFVE+I+P +KMRVWERGAG TLACGTGACAVVVA
Sbjct: 175 ASIPLETIGPKFEHHRVFPQRTNVEFVEVIAPDYMKMRVWERGAGITLACGTGACAVVVA 234
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
A+L G +R CTV+LPGG L I W + DN VYMTGPA+ VF G
Sbjct: 235 ALLTGKCDRSCTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEG 277
>gi|425465241|ref|ZP_18844551.1| Diaminopimelate epimerase [Microcystis aeruginosa PCC 9809]
gi|389832550|emb|CCI23726.1| Diaminopimelate epimerase [Microcystis aeruginosa PCC 9809]
Length = 301
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 174/280 (62%), Positives = 208/280 (74%), Gaps = 8/280 (2%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F KY GLGNDFIL+DNR+S EP IT E A +CDR+FGIGADGVIFA+PG TDYTMRI
Sbjct: 25 FTKYQGLGNDFILIDNRHSPEPLITAEMAVAMCDRHFGIGADGVIFALPGQAETDYTMRI 84
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
FNSDGSEPEMCGNG+RC A+FIA LE N +++ +HT AG I+P ++ + +V VDMG
Sbjct: 85 FNSDGSEPEMCGNGIRCLAQFIARLEANNTIGRTYRIHTLAGTIIPRLEANEQVTVDMGP 144
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P L S++PT+L ++ V+ L+V+G W VTCVSMGNPHCVTF + +
Sbjct: 145 PQLLGSEIPTTLVKGSEK-VLAVPLEVEGKDWLVTCVSMGNPHCVTFVGD------LASI 197
Query: 260 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVL 319
L IGPKFEHH VFP RTN EFVE+I+P +KMRVWERGAG TLACGTGACAVVVAA+L
Sbjct: 198 PLETIGPKFEHHPVFPQRTNVEFVEVIAPDYMKMRVWERGAGITLACGTGACAVVVAALL 257
Query: 320 EGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
G +R CTV+LPGG L I W + DN VYMTGPA+ VF G
Sbjct: 258 TGKCDRHCTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEG 297
>gi|443312136|ref|ZP_21041756.1| diaminopimelate epimerase [Synechocystis sp. PCC 7509]
gi|442777814|gb|ELR88087.1| diaminopimelate epimerase [Synechocystis sp. PCC 7509]
Length = 280
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 174/284 (61%), Positives = 212/284 (74%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ FVKY GLGNDFILVDNR S+E ++PEQA +LCDR+FGIGADGVIFA+PG+ GTDYTM
Sbjct: 3 IEFVKYQGLGNDFILVDNRASSELIVSPEQAIQLCDRHFGIGADGVIFALPGLEGTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ-SFTVHTGAGLIVPEIQDDGKVKVDM 197
RI NSDGSEPEMCGNG+RC A FIA+LE N K + +HT AG+I P+I DG+VKVDM
Sbjct: 63 RIINSDGSEPEMCGNGIRCLAGFIADLEGNNSKNVQYHIHTLAGVISPQILADGQVKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+LS+ +Q V+ L+V G W VTCVSMGNPHC+TF V
Sbjct: 123 GLPKLLAKEIPTTLSS-PEQKVINEPLEVAGKTWLVTCVSMGNPHCITFVE------DVA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++LA IG +FEHH FP +TNTEF++++ +LKMRVWERGAG TLACGTGACA +VA
Sbjct: 176 AIDLAVIGTQFEHHPAFPQKTNTEFIQVVGRDRLKMRVWERGAGITLACGTGACAALVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL G +R+ TV+LPGG L IEW E D +YMTG E VF G +
Sbjct: 236 VLTGKCDRKATVELPGGDLLIEWSEPDQRLYMTGAQERVFAGII 279
>gi|412988932|emb|CCO15523.1| diaminopimelate epimerase [Bathycoccus prasinos]
Length = 373
Score = 360 bits (925), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 175/308 (56%), Positives = 222/308 (72%), Gaps = 8/308 (2%)
Query: 59 IHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFG 118
I P++ R + + E+ + F KY GLGNDFILVDNR S P+I+PE+AA LCDRNFG
Sbjct: 69 IIVPKAIQRKAGSNYSETS-IQFWKYQGLGNDFILVDNRESDAPKISPERAALLCDRNFG 127
Query: 119 IGADGVIFAMPGVNGT--DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 176
IGADGVIFAMP + + DY M I+NSDGSEPEMCGNG+RC ARF+A+L+ + + V
Sbjct: 128 IGADGVIFAMPSPDPSKFDYKMTIYNSDGSEPEMCGNGIRCLARFVADLDKDQRGKKYNV 187
Query: 177 HTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCV 236
T AGLIVPE+++DG+V VDMG PIL AS+VP++L + E+ VDG KW V
Sbjct: 188 STLAGLIVPEVREDGQVAVDMGTPILNASNVPSTLKDCERSH----EMTVDGEKWLANAV 243
Query: 237 SMGNPHCVTFGTKEGQNLK-VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRV 295
MGNPHCV + G+ + V L+L +IGP FE H FPA+TNTEFV+++ ++KMRV
Sbjct: 244 GMGNPHCVVYKKANGEMISDVYGLDLPKIGPIFEKHETFPAKTNTEFVQVVDKGRVKMRV 303
Query: 296 WERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEV 355
WERGAG TLACGTGACA VVA V+EGH +R+C V+LPGGPL+IEW+E D+ + MTGPAE
Sbjct: 304 WERGAGCTLACGTGACATVVAGVIEGHVDRKCVVELPGGPLEIEWREIDDKIIMTGPAEP 363
Query: 356 VFYGSVLL 363
F G+ L
Sbjct: 364 TFEGTTAL 371
>gi|291567988|dbj|BAI90260.1| diaminopimelate epimerase [Arthrospira platensis NIES-39]
Length = 295
Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 171/284 (60%), Positives = 210/284 (73%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+ +EP T +QA ++CDR+FGIGADGVIFA+PG +DYTM
Sbjct: 11 IEFTKYHGLGNDFILIDNRHQSEPICTQKQAVQMCDRHFGIGADGVIFALPGDGASDYTM 70
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ-SFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A+FIAELE G ++ ++T AG+I P++ DG+VKVDM
Sbjct: 71 RIFNSDGSEPEMCGNGIRCLAKFIAELEGKTGTAIAYKINTAAGVICPQLLTDGQVKVDM 130
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A+++PT+LS N + V+ L V G W+VTCVSMGNPHC+TF V
Sbjct: 131 GLPRLLAAEIPTTLSENSLK-VIDVPLQVAGQPWSVTCVSMGNPHCITFVD------DVA 183
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L EIGP FEHH FP RTNTEF+E++ P +KMRVWERGAG TLACGTGACA VVA
Sbjct: 184 SVPLTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAG 243
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL +R+ TV+LPGG L IEW D +YMTGPA+ VF G +
Sbjct: 244 VLTQRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQRVFQGQL 287
>gi|425438596|ref|ZP_18818940.1| Diaminopimelate epimerase [Microcystis aeruginosa PCC 9717]
gi|389720504|emb|CCH95816.1| Diaminopimelate epimerase [Microcystis aeruginosa PCC 9717]
Length = 281
Score = 360 bits (923), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 176/283 (62%), Positives = 208/283 (73%), Gaps = 14/283 (4%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F KY GLGNDFIL+DNR+S EP IT E A +CDR+FGIGADGVIFA+PG TDYTMRI
Sbjct: 5 FTKYQGLGNDFILIDNRHSPEPLITAEMAVAMCDRHFGIGADGVIFALPGQAATDYTMRI 64
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
FNSDGSEPEMCGNG+RC A+FIA LE N +++ +HT AG I+P ++ + +V VDMG
Sbjct: 65 FNSDGSEPEMCGNGIRCLAQFIARLEANNAIGRTYRIHTLAGTIIPRLEANEQVTVDMGP 124
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P L S++PT+L ++ V+ L+V+G W VTCVSMGNPHCVTF VD L
Sbjct: 125 PQLLGSEIPTTLVKGSEK-VLAVPLEVEGKDWLVTCVSMGNPHCVTF---------VDDL 174
Query: 260 N---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
L IGPKFEHH VFP RTN EFVE+I+P +KMRVWERGAG TLACGTGACAVVVA
Sbjct: 175 ASIPLETIGPKFEHHPVFPQRTNVEFVEVIAPDYMKMRVWERGAGITLACGTGACAVVVA 234
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
A+L +R CTV+LPGG L I W + DN VYMTGPA+ VF G
Sbjct: 235 ALLTAKCDRHCTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEG 277
>gi|307153995|ref|YP_003889379.1| diaminopimelate epimerase [Cyanothece sp. PCC 7822]
gi|306984223|gb|ADN16104.1| diaminopimelate epimerase [Cyanothece sp. PCC 7822]
Length = 281
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 168/285 (58%), Positives = 211/285 (74%), Gaps = 8/285 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+S +P ++PE A ++CDR+FGIGADGVIF +PG TDY M
Sbjct: 3 IEFTKYHGLGNDFILIDNRHSKDPLVSPEMAVQMCDRHFGIGADGVIFVLPGTPQTDYQM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A+FIA+LE + +++ + T AG+I P ++++ +V VDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAQFIAQLEGTSESGKAYRIDTLAGVITPRLEEEEQVTVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L+A+ +PT+L + V+ L V G W VTCVSMGNPHC+TF VD
Sbjct: 123 GPPQLQAAQIPTTL-VTATEKVINQPLSVGGKSWLVTCVSMGNPHCITFVEN------VD 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++ L IGP+FEHH+ FP RTNTEF+E++ P LKMRVWERGAG TLACGTGACA VVA
Sbjct: 176 EIPLEVIGPEFEHHAAFPQRTNTEFIEVVRPDYLKMRVWERGAGITLACGTGACATVVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
+L ++RRCTV+LPGG L I W E D HVYMTGPA+ VF G L
Sbjct: 236 LLTHRSDRRCTVELPGGCLRIYWSETDGHVYMTGPAKRVFSGIYL 280
>gi|443322033|ref|ZP_21051068.1| diaminopimelate epimerase [Gloeocapsa sp. PCC 73106]
gi|442788236|gb|ELR97934.1| diaminopimelate epimerase [Gloeocapsa sp. PCC 73106]
Length = 281
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 171/286 (59%), Positives = 207/286 (72%), Gaps = 8/286 (2%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F KY GLGNDFIL+DNR+ P ITPEQA K+CDR+ GIGADGVIFA+PG TDYT
Sbjct: 1 MIEFSKYQGLGNDFILIDNRHQNTPVITPEQAVKMCDRHLGIGADGVIFALPGDEETDYT 60
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENL-NGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
MRIFN+DGSEPEMCGNG+RC A+FIA+LE N S+ + T G+I P+++ G+VKVD
Sbjct: 61 MRIFNADGSEPEMCGNGIRCLAKFIADLEQKHNVGHSYQIRTLGGIITPQLEAQGQVKVD 120
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P +A +PT+L + V+ L V W+VTCV+MGNPHCVTF V
Sbjct: 121 MGVPTYQAQAIPTTL-GTPEAEVINQPLVVADQTWSVTCVNMGNPHCVTFVED------V 173
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
+K+ LA +GP+FEHH FP R NTEF+++I P LKMRVWERGAG TLACGTGACA VVA
Sbjct: 174 EKIPLAILGPQFEHHPAFPERINTEFIQVIRPDYLKMRVWERGAGMTLACGTGACAAVVA 233
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VL G +E CTV+LPGGPL I W E H+YMTGPAE+VF G+ L
Sbjct: 234 GVLTGMSESVCTVELPGGPLAIAWSSETGHIYMTGPAELVFKGNNL 279
>gi|282898651|ref|ZP_06306639.1| Diaminopimelate epimerase [Cylindrospermopsis raciborskii CS-505]
gi|281196519|gb|EFA71428.1| Diaminopimelate epimerase [Cylindrospermopsis raciborskii CS-505]
Length = 279
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 167/284 (58%), Positives = 209/284 (73%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR P ITPE A ++CDR+FGIGADGVIFA+PG GTDYTM
Sbjct: 3 IEFTKYHGLGNDFILIDNRCDLTPLITPEMAIRMCDRHFGIGADGVIFALPGQKGTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A F+ ELE ++ K + +HT AG+I P++ DDG+V+VDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAAFLTELEGISRSKDYYLIHTLAGVIRPQLTDDGQVRVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+L A + ++ L++ W++TCVSMGNPHC+TF V
Sbjct: 123 GSPRLLAQEIPTTL-APGNSKIINLPLEIGNQTWHITCVSMGNPHCITFVE------DVA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L IGP+FEHH VFP RTNTEF+++++P LKMRVWERGAG TLACGTGACA +VA
Sbjct: 176 SIPLEIIGPEFEHHPVFPQRTNTEFIQVVNPHHLKMRVWERGAGITLACGTGACASLVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL +R ++LPGG L+IEW E D +YMTGPAE VF G +
Sbjct: 236 VLNNLCDRMAIIELPGGNLEIEWSETDQRIYMTGPAERVFTGKM 279
>gi|218442032|ref|YP_002380361.1| diaminopimelate epimerase [Cyanothece sp. PCC 7424]
gi|226724206|sp|B7KH06.1|DAPF_CYAP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|218174760|gb|ACK73493.1| Diaminopimelate epimerase [Cyanothece sp. PCC 7424]
Length = 281
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 170/283 (60%), Positives = 208/283 (73%), Gaps = 10/283 (3%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+ +EP ++PE A ++CDR+FGIGADGVIF +PG + TDY M
Sbjct: 3 IEFTKYHGLGNDFILIDNRHGSEPMVSPEMAVEMCDRHFGIGADGVIFVLPGTSQTDYQM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLN--GKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSEPEMCGNG+RC A+FIAELE GK S+ + T GL+ P ++ +V VD
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAQFIAELEKTTEVGK-SYRIDTLGGLMTPRLEAQEQVTVD 121
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L S++PT+L ++ + V+ ++V G W VTCVSMGNPHC+TF V
Sbjct: 122 MGLPRLLGSEIPTTL-VSRTEKVIDQPIEVAGQSWLVTCVSMGNPHCITFVED------V 174
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
+ L IGP+FEHH FP RTNTEF+E++ P LKMRVWERGAG TLACGTGACA VVA
Sbjct: 175 KSIALETIGPQFEHHVAFPQRTNTEFIEVLRPDYLKMRVWERGAGITLACGTGACASVVA 234
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VL G ++RRCTV+LPGG L I W E D HVYMTGPA+ VF G
Sbjct: 235 GVLTGKSDRRCTVELPGGCLSIYWSETDGHVYMTGPAKRVFTG 277
>gi|443316269|ref|ZP_21045720.1| diaminopimelate epimerase [Leptolyngbya sp. PCC 6406]
gi|442784123|gb|ELR94012.1| diaminopimelate epimerase [Leptolyngbya sp. PCC 6406]
Length = 284
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 182/286 (63%), Positives = 212/286 (74%), Gaps = 12/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDF+LVDNR+ + P +TPEQA K CDRNFGIGADGVIF +PG GTDYTM
Sbjct: 3 IAFSKYHGLGNDFVLVDNRHQSAPCLTPEQAVKWCDRNFGIGADGVIFVLPGQQGTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGK-----QSFTVHTGAGLIVPEIQDDGKV 193
RIFNSDGSEPEMCGNG+RC A+FIA LE +G+ +++T+HT AG I P +Q DG+V
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAKFIATLETADGQPAAPPKAYTIHTLAGTITPTLQPDGQV 122
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMGEP L A ++PT+L A DQ V+ L VD W VT VSMGNPHC+TF
Sbjct: 123 TVDMGEPQLLAGEIPTTLVA-PDQRVISQSLGVDQQPWVVTAVSMGNPHCITFVE----- 176
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V L+LA +GPKFEHH FP R NTEF+E+++ LKMRVWERGAGATLACGTGACA
Sbjct: 177 -DVASLDLATLGPKFEHHIAFPQRINTEFIEVMARDYLKMRVWERGAGATLACGTGACAA 235
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAAVL +R TV+LPGGPL IEW +N VYMTGPAE VF G
Sbjct: 236 VVAAVLTERCDRIATVELPGGPLRIEWSAPENRVYMTGPAEQVFTG 281
>gi|428774605|ref|YP_007166393.1| diaminopimelate epimerase [Cyanobacterium stanieri PCC 7202]
gi|428688884|gb|AFZ48744.1| diaminopimelate epimerase [Cyanobacterium stanieri PCC 7202]
Length = 277
Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 171/285 (60%), Positives = 212/285 (74%), Gaps = 10/285 (3%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR S +P +TP +A K+CDR+FGIGADGVIF +P N YTM
Sbjct: 1 MQFSKYHGLGNDFILIDNRQSDQPLVTPAEAVKMCDRHFGIGADGVIFVLPPQNNCQYTM 60
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLN--GKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSEPEMCGNG+RCFA+F+ ELE GKQ + +HT AG I P I+ +G ++VD
Sbjct: 61 RIFNSDGSEPEMCGNGIRCFAQFVTELEGKEEVGKQ-YPIHTLAGTITPTIKGEGMIRVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MGEP L + +PT+L+ ++ VV+ L V ++ V+CVSMGNPHC+ F V
Sbjct: 120 MGEPELTPAKIPTTLNQGGEK-VVRESLTVADKEYEVSCVSMGNPHCLVFVDS------V 172
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
++L +IGP FE H+VFP +TNTEF+E++ P LKMRVWERGAG TLACGTGACA VVA
Sbjct: 173 ADIDLEKIGPLFETHAVFPQKTNTEFIEVVRPDYLKMRVWERGAGITLACGTGACATVVA 232
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL G +R CTV+LPGG L+IEW EEDNHVYMTGPA VF G++
Sbjct: 233 GVLNGKCDRTCTVELPGGCLEIEWNEEDNHVYMTGPALKVFSGNM 277
>gi|427721139|ref|YP_007069133.1| diaminopimelate epimerase [Calothrix sp. PCC 7507]
gi|427353575|gb|AFY36299.1| diaminopimelate epimerase [Calothrix sp. PCC 7507]
Length = 279
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 178/284 (62%), Positives = 219/284 (77%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+++ P +TPEQA +LCDR+FGIGADGVIFA+PG NGTDYTM
Sbjct: 3 IEFTKYHGLGNDFILIDNRSTSLPVLTPEQAVELCDRHFGIGADGVIFALPGENGTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A FIA+LE + K + +HT AG++ P+I +G+VKVDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAGFIADLEGESRNKDLYHIHTLAGVMAPQILPNGQVKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PTSL A ++ V+ L+V G W+VTCVSMGNPHC+TF V
Sbjct: 123 GLPKLLAGEIPTSL-ALAEEKVINQPLEVAGKSWDVTCVSMGNPHCITFVE------DVA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L IGP+FEHH VFP RTNTEF++++ P LKMRVWERGAG TLACGTGACA +VAA
Sbjct: 176 AIPLEAIGPQFEHHPVFPQRTNTEFIQVVRPDYLKMRVWERGAGITLACGTGACAALVAA 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL G ++R TV+LPGGPL IEW + D +YMTGPA+ VF GS+
Sbjct: 236 VLTGRSDRTATVELPGGPLQIEWSQIDQRLYMTGPAQKVFTGSL 279
>gi|209526281|ref|ZP_03274810.1| Diaminopimelate epimerase [Arthrospira maxima CS-328]
gi|376001553|ref|ZP_09779419.1| Diaminopimelate epimerase [Arthrospira sp. PCC 8005]
gi|209493210|gb|EDZ93536.1| Diaminopimelate epimerase [Arthrospira maxima CS-328]
gi|375330066|emb|CCE15172.1| Diaminopimelate epimerase [Arthrospira sp. PCC 8005]
Length = 287
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 170/284 (59%), Positives = 208/284 (73%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+ +EP T QA ++CDR+FGIGADGVIFA+PG +DYTM
Sbjct: 3 IEFTKYHGLGNDFILIDNRHQSEPICTQRQAVQMCDRHFGIGADGVIFALPGDGASDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ-SFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A+FI ELE G ++ ++T AG+I PE+ DG+VKVDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAKFITELEGKTGTAIAYKINTAAGVICPELLTDGQVKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A+++PT+LS N + V+ L+V G +VTCVSMGNPHC+TF V
Sbjct: 123 GLPRLLAAEIPTTLSEN-NLKVIDVPLEVAGQVLSVTCVSMGNPHCITFVD------DVA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L EIGP FEHH FP RTNTEF+E++ P +KMRVWERGAG TLACGTGACA VVA
Sbjct: 176 SVPLTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL +R+ TV+LPGG L IEW D +YMTGPA+ VF G +
Sbjct: 236 VLTQRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQAVFQGQL 279
>gi|423062672|ref|ZP_17051462.1| diaminopimelate epimerase [Arthrospira platensis C1]
gi|406716007|gb|EKD11159.1| diaminopimelate epimerase [Arthrospira platensis C1]
Length = 288
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 170/284 (59%), Positives = 208/284 (73%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+ +EP T QA ++CDR+FGIGADGVIFA+PG +DYTM
Sbjct: 4 IEFTKYHGLGNDFILIDNRHQSEPICTQRQAVQMCDRHFGIGADGVIFALPGDGASDYTM 63
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ-SFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A+FI ELE G ++ ++T AG+I PE+ DG+VKVDM
Sbjct: 64 RIFNSDGSEPEMCGNGIRCLAKFITELEGKTGTAIAYKINTAAGVICPELLTDGQVKVDM 123
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A+++PT+LS N + V+ L+V G +VTCVSMGNPHC+TF V
Sbjct: 124 GLPRLLAAEIPTTLSEN-NLKVIDVPLEVAGQVLSVTCVSMGNPHCITFVD------DVA 176
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L EIGP FEHH FP RTNTEF+E++ P +KMRVWERGAG TLACGTGACA VVA
Sbjct: 177 SVPLTEIGPLFEHHPAFPERTNTEFIEVVRPDYVKMRVWERGAGITLACGTGACASVVAG 236
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL +R+ TV+LPGG L IEW D +YMTGPA+ VF G +
Sbjct: 237 VLTQRCDRQVTVELPGGCLQIEWSATDQRLYMTGPAQAVFQGQL 280
>gi|428768952|ref|YP_007160742.1| diaminopimelate epimerase [Cyanobacterium aponinum PCC 10605]
gi|428683231|gb|AFZ52698.1| diaminopimelate epimerase [Cyanobacterium aponinum PCC 10605]
Length = 280
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 173/287 (60%), Positives = 214/287 (74%), Gaps = 14/287 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KYHGLGNDFIL+DNR+ ++P ++ E A K+CDR+FGIGADGVIF + G TDYTM
Sbjct: 3 LKFSKYHGLGNDFILIDNRHQSQPLVSQEDAVKMCDRHFGIGADGVIFVLAGEGDTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ----SFTVHTGAGLIVPEIQDDGKVK 194
RIFNSDGSEPEMCGNG+RCFA+FI ELE GK+ ++ +HT AGLI P I +G+VK
Sbjct: 63 RIFNSDGSEPEMCGNGIRCFAQFITELE---GKEEIGKTYRIHTLAGLICPTIMGNGQVK 119
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMGEP L+A +PT+L ++ VV L V ++V+CVSMGNPHC+ F
Sbjct: 120 VDMGEPQLEAEKIPTTLGKTGEK-VVNESLIVGDRTYHVSCVSMGNPHCLVFVED----- 173
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
++++NL EIG KFE+H VFP +TNTEF++IIS + LKM+VWERGAG TLACGTGACA V
Sbjct: 174 -IEQINLNEIGSKFENHPVFPQKTNTEFIQIISHNYLKMKVWERGAGITLACGTGACATV 232
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA VL +R TV+LPGG L+IEW E+DNHVYMTGPA VF G +
Sbjct: 233 VAGVLNERCDRISTVELPGGCLEIEWSEKDNHVYMTGPATKVFSGQI 279
>gi|428220363|ref|YP_007104533.1| diaminopimelate epimerase [Synechococcus sp. PCC 7502]
gi|427993703|gb|AFY72398.1| diaminopimelate epimerase [Synechococcus sp. PCC 7502]
Length = 288
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 167/283 (59%), Positives = 209/283 (73%), Gaps = 7/283 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DN +S EP ++P+ A K CDR+FGIGADGVIF + Y M
Sbjct: 6 IAFSKYHGLGNDFILIDNCSSKEPYLSPQLAIKYCDRHFGIGADGVIFLLSDGAQDSYRM 65
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RI+NSDGSEPEMCGNG+RC A+F+ +LE + + + TGAGL+V ++ DG+V VDMG
Sbjct: 66 RIYNSDGSEPEMCGNGIRCLAKFMQDLEIPTIENQYFLQTGAGLMVVKLNADGQVTVDMG 125
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
EP L A ++PT+L A++DQ V+ L++DG WNVT VSMGNPHC+TF D+
Sbjct: 126 EPRLLAQEIPTTL-ADRDQKVINQPLEIDGQIWNVTTVSMGNPHCITFVA------DADR 178
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
+ LAE+G KFEHH VFP RTNTEF+E++S S +KMRVWERGAGATLACGTGACA VVA V
Sbjct: 179 IPLAELGIKFEHHPVFPKRTNTEFIEVVSSSYIKMRVWERGAGATLACGTGACASVVAGV 238
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
L G +R CTV+LPGG L I W NH++MTG AE VF G++
Sbjct: 239 LNGKCDRVCTVNLPGGDLQIHWDTTTNHIFMTGTAERVFTGTI 281
>gi|428778055|ref|YP_007169842.1| diaminopimelate epimerase [Halothece sp. PCC 7418]
gi|428692334|gb|AFZ45628.1| diaminopimelate epimerase [Halothece sp. PCC 7418]
Length = 282
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 167/282 (59%), Positives = 209/282 (74%), Gaps = 8/282 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
++F KYHGLGNDFIL+DNR+ P +T EQA KLCDR+FGIGADGVIFA+P ++YTM
Sbjct: 3 INFTKYHGLGNDFILIDNRHDDTPCLTSEQAIKLCDRHFGIGADGVIFALPPQGDSNYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELE-NLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI+NSDGSEPEMCGNG+RC ARF+AEL+ + + +HT AG+I P++QD KV V+M
Sbjct: 63 RIYNSDGSEPEMCGNGIRCLARFVAELDGKTESNEVYKIHTLAGMIRPQLQDGDKVTVNM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP L A ++PT+L + +++ V+ L V W VTCVSMGNPHC+TF D
Sbjct: 123 GEPYLLAEEIPTTLGSAQEK-VINQSLTVAEQTWQVTCVSMGNPHCITFVDH------AD 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++L +IG +FE+HSVFP R NTEF+E++ +KMRVWERGAG TLACGTGACA VVA
Sbjct: 176 AIDLEKIGSQFENHSVFPKRINTEFIEVVRRDYIKMRVWERGAGITLACGTGACASVVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VL + +R TV+LPGG L+IEW E DNHVYMTGPA VF G
Sbjct: 236 VLTNNCDRASTVELPGGCLEIEWSESDNHVYMTGPATKVFTG 277
>gi|427420200|ref|ZP_18910383.1| diaminopimelate epimerase [Leptolyngbya sp. PCC 7375]
gi|425762913|gb|EKV03766.1| diaminopimelate epimerase [Leptolyngbya sp. PCC 7375]
Length = 285
Score = 353 bits (906), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 168/290 (57%), Positives = 203/290 (70%), Gaps = 12/290 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KYHGLGNDFILVDNR+ + P +TP+QA LCDRN GIGADGVIFA+PG NG DYTM
Sbjct: 3 LAFSKYHGLGNDFILVDNRHQSSPVLTPKQAMDLCDRNIGIGADGVIFALPGENGADYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGK-----QSFTVHTGAGLIVPEIQDDGKV 193
RIFNSDGSEPEMCGNG+RC A+++A LE K ++ +HT AGLIVP +Q DG++
Sbjct: 63 RIFNSDGSEPEMCGNGIRCMAKYLAALETEAHKSPIPPHTYQIHTLAGLIVPRLQTDGQI 122
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMGEP L A ++P ++ AN + ++ L V + VTC+SMGNPHC+TF
Sbjct: 123 TVDMGEPRLLAGEIPATV-ANASEKIIDRSLVVADKTYQVTCISMGNPHCITFVE----- 176
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ L EIGP FE H FP R N EF+E++ LKM VWERGAG T+ACGTGACA
Sbjct: 177 -DTTTVPLEEIGPLFERHQAFPQRINAEFIEVVRSDYLKMLVWERGAGPTMACGTGACAA 235
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+VA VL G +R TV+LPGGPL IEW +NHVYMTGPA +VF G L
Sbjct: 236 LVATVLNGKCDRTATVELPGGPLKIEWSATNNHVYMTGPAVLVFTGEAAL 285
>gi|218247127|ref|YP_002372498.1| diaminopimelate epimerase [Cyanothece sp. PCC 8801]
gi|226724207|sp|B7K1E7.1|DAPF_CYAP8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|218167605|gb|ACK66342.1| Diaminopimelate epimerase [Cyanothece sp. PCC 8801]
Length = 281
Score = 353 bits (906), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 169/282 (59%), Positives = 207/282 (73%), Gaps = 8/282 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KY GLGNDFIL+DNR+S P ++PEQA K+CDR+FGIGADGVIF +PG TDYTM
Sbjct: 3 IEFSKYQGLGNDFILIDNRSSHTPLVSPEQAIKMCDRHFGIGADGVIFVLPGTANTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEP+MCGNG+RC ARFIA LE +++ + T AG+I P ++ G+VKVDM
Sbjct: 63 RIFNSDGSEPQMCGNGIRCLARFIAHLEGGETLGKTYQIDTLAGVISPRLEAQGQVKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+L N + V+ L+V G W VTCVSMGNPHC+TF K+ V
Sbjct: 123 GTPYLLAKEIPTTL-GNSNDKVINHSLEVAGQTWLVTCVSMGNPHCITF-VKD-----VW 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++L +GP+FEHH FP RTNTEF+E++ +KMRVWERGAG TLACGTGACA VVA
Sbjct: 176 GIDLPTLGPQFEHHPGFPERTNTEFIEVVRRDYVKMRVWERGAGITLACGTGACASVVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VL +R C V+LPGG L IEW E DN +YMTGPAE+VF G
Sbjct: 236 VLTNQCDRYCIVELPGGNLTIEWSEMDNRIYMTGPAELVFTG 277
>gi|158335501|ref|YP_001516673.1| diaminopimelate epimerase [Acaryochloris marina MBIC11017]
gi|189082824|sp|B0C312.1|DAPF_ACAM1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|158305742|gb|ABW27359.1| diaminopimelate epimerase [Acaryochloris marina MBIC11017]
Length = 283
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 165/283 (58%), Positives = 202/283 (71%), Gaps = 9/283 (3%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KY GLGNDFIL+DNR+ +P +TP+QA ++CDRNFGIG DGVIFA+P TDYTM
Sbjct: 3 VEFTKYQGLGNDFILIDNRHQAQPCLTPDQAVQMCDRNFGIGGDGVIFALPPEGDTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELEN--LNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RI+NSDGSEPEMCGNG+RC ARF+A LE L ++ +HT AG I P +Q DG VKVD
Sbjct: 63 RIYNSDGSEPEMCGNGIRCLARFLAHLEGKPLQTDITYRIHTLAGTITPSLQADGLVKVD 122
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L ++PT+L D VV L+V G W VTCVSMGNPHC+TF +
Sbjct: 123 MGPPFLVPQEIPTTLGEGTD-PVVNQPLEVAGQSWPVTCVSMGNPHCITFVD------DL 175
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
+ ++ +GP+FEHH VFP R NTEF+++I P LKM VWERGAG TLACGTGACAV+VA
Sbjct: 176 EAIDFQTLGPQFEHHPVFPQRINTEFIQVIRPDYLKMLVWERGAGPTLACGTGACAVLVA 235
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VL G ++ + T++LPGGPL I W E V+MTGPAE VF G
Sbjct: 236 GVLTGKSQSQATIELPGGPLQIRWAGEGQSVFMTGPAEKVFTG 278
>gi|257060198|ref|YP_003138086.1| diaminopimelate epimerase [Cyanothece sp. PCC 8802]
gi|256590364|gb|ACV01251.1| diaminopimelate epimerase [Cyanothece sp. PCC 8802]
Length = 281
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 168/282 (59%), Positives = 207/282 (73%), Gaps = 8/282 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KY GLGNDFIL+DNR+S P ++PEQA K+CDR+FGIGADGVIF +PG TDYTM
Sbjct: 3 IEFSKYQGLGNDFILIDNRSSHTPLVSPEQAIKMCDRHFGIGADGVIFVLPGTANTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEP+MCGNG+RC ARFIA LE +++ + T AG+I P ++ G+VKVDM
Sbjct: 63 RIFNSDGSEPQMCGNGIRCLARFIAHLEGGETLGKTYQIDTLAGVISPRLEAQGQVKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+L N + V+ L+V G W VTCVSMGNPHC+TF K+ V
Sbjct: 123 GTPYLLAKEIPTTL-GNSNDKVINHSLEVAGQTWLVTCVSMGNPHCITF-VKD-----VW 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++L +GP+FEHH FP RTNTEF+E++ +KMRVWERGAG TLACGTGACA VVA
Sbjct: 176 GIDLPTLGPQFEHHPGFPERTNTEFIEVVRRDYVKMRVWERGAGITLACGTGACASVVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VL +R C V+LPGG L IEW E +N +YMTGPAE+VF G
Sbjct: 236 VLTNQCDRYCIVELPGGNLTIEWSEMNNRIYMTGPAELVFTG 277
>gi|443475749|ref|ZP_21065687.1| diaminopimelate epimerase [Pseudanabaena biceps PCC 7429]
gi|443019362|gb|ELS33461.1| diaminopimelate epimerase [Pseudanabaena biceps PCC 7429]
Length = 280
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 170/285 (59%), Positives = 210/285 (73%), Gaps = 7/285 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+S EP T EQ+ KLCDRNFGIGADGVIF + V+G + M
Sbjct: 3 IAFSKYHGLGNDFILIDNRHSAEPIFTAEQSIKLCDRNFGIGADGVIFLLTAVDG-GHQM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RIFNSDGSEPEMCGNG+RC A+F+ +L + ++ +++HTGAGLIVP++ DG+V VDMG
Sbjct: 62 RIFNSDGSEPEMCGNGIRCLAKFMDDLGIPSLERKYSIHTGAGLIVPQMDADGQVTVDMG 121
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
+P L A+++PT+L D+ V+ ++V G WNVT VSMGNPHC+ F V
Sbjct: 122 KPFLTAAEIPTTLGEAGDRKVIDFPVEVGGKVWNVTTVSMGNPHCMIFVDD------VAS 175
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
+ LAEIG FEHH FP RTNTEFVE+++ +KMRVWERGAGATLACGTGACA VVA V
Sbjct: 176 IPLAEIGVLFEHHPAFPNRTNTEFVEVVNRGYVKMRVWERGAGATLACGTGACATVVAGV 235
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
L +R CTV+LPGG L I W E +HV MTGPA +VF GS+ L
Sbjct: 236 LNDRCDRNCTVNLPGGDLQIHWLAESDHVLMTGPATLVFTGSLKL 280
>gi|428211768|ref|YP_007084912.1| diaminopimelate epimerase [Oscillatoria acuminata PCC 6304]
gi|428000149|gb|AFY80992.1| diaminopimelate epimerase [Oscillatoria acuminata PCC 6304]
Length = 284
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 168/289 (58%), Positives = 210/289 (72%), Gaps = 13/289 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
L F KY GLGNDFIL+DNR + EP ITP QA +LCDRNFGIGADGVIFA+P TDYT
Sbjct: 3 LEFTKYQGLGNDFILIDNRQNPEPMITPSQAEQLCDRNFGIGADGVIFALPPTEPDTDYT 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAEL-----ENLNGKQSFTVHTGAGLIVPEIQDDGK 192
MRI+NSD SEPEMCGNG+RC ARF+ +L + G + + T AG++ ++ DG+
Sbjct: 63 MRIYNSDASEPEMCGNGIRCLARFLVDLGVPTRSSATGTGEYRIQTLAGVMTLTLKSDGQ 122
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V+VDMG P L +S++PT+L ++++V L V G W+VTCVSMGNPHC+TF
Sbjct: 123 VRVDMGLPRLLSSEIPTTLCPPEEKAV-NVPLSVAGKTWDVTCVSMGNPHCITFVED--- 178
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD ++LA IGP+FE+H FP RTNTEF++++ S LKMRVWERGAGATLACGTGACA
Sbjct: 179 ---VDAVDLAGIGPQFENHPAFPKRTNTEFIQVMGRSHLKMRVWERGAGATLACGTGACA 235
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+VA VL G +R+ T++LPGGPL IEW E D +YMTGPAE VF G +
Sbjct: 236 TLVAGVLTGRCDRQATIELPGGPLHIEWSESDGRLYMTGPAERVFSGRI 284
>gi|359457289|ref|ZP_09245852.1| diaminopimelate epimerase [Acaryochloris sp. CCMEE 5410]
Length = 283
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 165/283 (58%), Positives = 202/283 (71%), Gaps = 9/283 (3%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KY GLGNDFIL+DNR+ +P +TP+QA ++CDRNFGIG DGVIFA+P TDYTM
Sbjct: 3 VEFTKYQGLGNDFILIDNRHQAQPCLTPDQAVQMCDRNFGIGGDGVIFALPPDGDTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFT--VHTGAGLIVPEIQDDGKVKVD 196
RI+NSDGSEPEMCGNG+RC ARF+A LE + T +HT AG I P +Q DG VKVD
Sbjct: 63 RIYNSDGSEPEMCGNGIRCLARFLAHLEGKPPQTDITYRIHTLAGTITPSLQADGLVKVD 122
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L ++PT+L D VV L+V G W+VTCVSMGNPHC+TF +
Sbjct: 123 MGPPFLVPQEIPTTLGEGTD-PVVNQPLEVGGQSWSVTCVSMGNPHCITFVE------DL 175
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
+ ++ +GP+FEHH VFP R NTEF+++I P LKM VWERGAG TLACGTGACAV+VA
Sbjct: 176 EAIDFQALGPQFEHHPVFPQRINTEFIQVIRPDYLKMLVWERGAGPTLACGTGACAVLVA 235
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VL G ++ + T++LPGGPL I W E V+MTGPAE VF G
Sbjct: 236 GVLTGKSQSQATIELPGGPLQIRWAGEGQSVFMTGPAEKVFTG 278
>gi|298711974|emb|CBJ32916.1| diaminopimelate epimerase [Ectocarpus siliculosus]
Length = 285
Score = 349 bits (896), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 167/286 (58%), Positives = 203/286 (70%), Gaps = 7/286 (2%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F KY GLGNDFILVDNR TEP +T E++A LCDR +GIG DGVIFA+PG + DY+
Sbjct: 6 LVPFSKYQGLGNDFILVDNREETEPMLTAEESASLCDRRYGIGGDGVIFALPGSDEMDYS 65
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
MRI NSDGSEPEMCGNG+RC ARF+A+LE K + +HT AG I+P ++DG V VDM
Sbjct: 66 MRIINSDGSEPEMCGNGIRCMARFLADLEG-KKKAEYKIHTLAGTIIPMAREDGLVTVDM 124
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L VP++L N D V+K + VDG W VTCVSMGNPH V F VD
Sbjct: 125 GPPELNGPKVPSTLPTNDDGVVLKEPIKVDGKDWEVTCVSMGNPHAVVFVPD------VD 178
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
L+L IGP+FE H FPA+ NTEFV++++ +KM VWERG G T ACGTGACA+VVA+
Sbjct: 179 ALDLPTIGPQFETHPSFPAKINTEFVQVLNRGHVKMVVWERGCGITQACGTGACALVVAS 238
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VL G A+R+CTV LPGG L IEW+E D VYMTGPAE+ F G ++
Sbjct: 239 VLAGLADRKCTVTLPGGDLQIEWRESDGKVYMTGPAELAFQGDAVV 284
>gi|57864906|gb|AAW57080.1| diaminopimelate epimerase 2 [cyanobacterium endosymbiont of
Rhopalodia gibba]
Length = 279
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 163/283 (57%), Positives = 208/283 (73%), Gaps = 8/283 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGND IL+ NR S P ++PEQ+ K+CDR+FGIGADGVIFA+PG+ TDYTM
Sbjct: 3 IAFTKYHGLGNDLILIHNRLSNSPLVSPEQSVKMCDRHFGIGADGVIFALPGIGNTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI N DGSEP+MCGNG+RC AR IA+LE +++++HT G+I P ++ +G+V+VDM
Sbjct: 63 RILNPDGSEPQMCGNGIRCLARLIAQLEGGETLGKTYSIHTPTGVISPRLEAEGQVRVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+L N +++V+ L V G W VTCVSMGNPHC+TF
Sbjct: 123 GTPYLFAHEIPTTL-GNPNETVINKPLAVAGKLWLVTCVSMGNPHCITFVED------AS 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++LA +G +FE+H +FP R NTEF+E++ P LKMRVWERGAGATLACGTGACA VVA
Sbjct: 176 AIDLAVLGLQFEYHQMFPERINTEFIEVVRPDYLKMRVWERGAGATLACGTGACASVVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
VL + R CTV+LPGG L IEW E DN +YMTG A++VF GS
Sbjct: 236 VLTENCARNCTVELPGGCLMIEWSEVDNRLYMTGQAQLVFTGS 278
>gi|428781681|ref|YP_007173467.1| diaminopimelate epimerase [Dactylococcopsis salina PCC 8305]
gi|428695960|gb|AFZ52110.1| diaminopimelate epimerase [Dactylococcopsis salina PCC 8305]
Length = 281
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 167/284 (58%), Positives = 205/284 (72%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNRN P +T EQA KLCDR+FGIGADGVIF + V +DYTM
Sbjct: 3 IKFTKYHGLGNDFILIDNRNDHTPCLTSEQAMKLCDRHFGIGADGVIFVLSPVGESDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELE-NLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI+NSDGSEPEMCGNG+RCFA+F+A+LE N Q + +HT AG I P++Q++ KV V+M
Sbjct: 63 RIYNSDGSEPEMCGNGIRCFAQFLADLEGKENSNQVYNIHTLAGTIRPQLQEENKVTVNM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G+P L A ++PT+L A+ + VV L V W VTCVSMGNPHC+TF +
Sbjct: 123 GQPYLLAQEIPTTL-ASPQEKVVNQSLFVADQNWQVTCVSMGNPHCITFVE------NAE 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L +IG +FEHHS FP NTEF+E++ LKMRVWERGAG TLACGTGACA VVA
Sbjct: 176 AIPLEKIGAEFEHHSAFPKLINTEFIEVVQRDYLKMRVWERGAGITLACGTGACASVVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL +R TV+LPGG L+I W +EDN+VYMTGPA VF G +
Sbjct: 236 VLNDKNDRASTVELPGGCLEIHWSQEDNNVYMTGPATKVFSGQL 279
>gi|425437940|ref|ZP_18818352.1| Diaminopimelate epimerase [Microcystis aeruginosa PCC 9432]
gi|389676940|emb|CCH94071.1| Diaminopimelate epimerase [Microcystis aeruginosa PCC 9432]
Length = 281
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 176/283 (62%), Positives = 208/283 (73%), Gaps = 14/283 (4%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F KY GLGNDFIL+DNR+S EP ITPE A +CDR+FGIGADGVIF +PG TDYTMRI
Sbjct: 5 FTKYQGLGNDFILIDNRHSPEPLITPEIAVAMCDRHFGIGADGVIFVLPGQAATDYTMRI 64
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
FNSDGSEPEMCGNG+RC A+FIA LE N +++ +HT AG I+P ++ + +V VDMG
Sbjct: 65 FNSDGSEPEMCGNGIRCLAQFIARLEANNAIGRTYRIHTLAGTIIPRLEANEQVTVDMGP 124
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P L S++PT+L ++ V+ L+V+G W +TCVSMGNPHCVTF VD L
Sbjct: 125 PQLLGSEIPTTLVKGSEK-VLAVPLEVEGKDWLITCVSMGNPHCVTF---------VDDL 174
Query: 260 N---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
L IGPKFEHH VFP RTN EFVE+I+P +KMRVWERGAG TLACGTGACAVVVA
Sbjct: 175 ASIPLETIGPKFEHHPVFPQRTNVEFVEVIAPDYMKMRVWERGAGITLACGTGACAVVVA 234
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
AVL +R CTV+LPGG L I W + DN VYMTGPA+ VF G
Sbjct: 235 AVLTAKCDRHCTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEG 277
>gi|254421846|ref|ZP_05035564.1| diaminopimelate epimerase [Synechococcus sp. PCC 7335]
gi|196189335|gb|EDX84299.1| diaminopimelate epimerase [Synechococcus sp. PCC 7335]
Length = 271
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 165/275 (60%), Positives = 204/275 (74%), Gaps = 12/275 (4%)
Query: 94 VDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGN 153
+DNR S P +TPEQA +CDRNFGIGADGVIF +PG G DY+MRI+NSDGSEPEMCGN
Sbjct: 1 MDNRASETPMVTPEQAVDVCDRNFGIGADGVIFVLPGKEGADYSMRIYNSDGSEPEMCGN 60
Query: 154 GVRCFARFIAELENLNGK----QSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPT 209
G+RC A+FIA+LE + + +S+ VHT AG+I PE++ DG+V VDMGEPIL A ++PT
Sbjct: 61 GIRCLAKFIADLEEEHNEPTLPKSYGVHTLAGIIRPELKPDGQVTVDMGEPILTAREIPT 120
Query: 210 SLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFE 269
+L D V+ L V G W VTCVSMGNPHC+TF V+ + LA+IGP+FE
Sbjct: 121 TL-GQPDGKVIDETLTVAGENWQVTCVSMGNPHCITFVDD------VEAVPLADIGPRFE 173
Query: 270 HHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTV 329
HH FPAR NTEFVE++ P L+M+VWERGAG TLACGTG CA+VVAAVL G +R+ TV
Sbjct: 174 HHEAFPARINTEFVEVVRPDFLRMKVWERGAGPTLACGTGTCALVVAAVLNGKCDRQTTV 233
Query: 330 DLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
+LPGG L+IEW +N VYMTGPA +VF G V ++
Sbjct: 234 ELPGGNLEIEWA-NNNRVYMTGPATLVFSGDVAVD 267
>gi|220905990|ref|YP_002481301.1| diaminopimelate epimerase [Cyanothece sp. PCC 7425]
gi|254767099|sp|B8HU20.1|DAPF_CYAP4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|219862601|gb|ACL42940.1| Diaminopimelate epimerase [Cyanothece sp. PCC 7425]
Length = 280
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 202/283 (71%), Gaps = 9/283 (3%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KY GLGNDFIL+DNRN P +TPEQA +CDR+FG+GADGVIF +P TDYTM
Sbjct: 3 LQFTKYQGLGNDFILIDNRNEATPLLTPEQAVDICDRHFGVGADGVIFLLPATGETDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELEN--LNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSEPEMCGNG+RC ARF A+LE L + +HT AG I P+++ DG+V VD
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLARFAADLEGHALTATPRYRIHTLAGTITPQVRSDGQVTVD 122
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG+P L A ++PT+L ++ V+ L V G W+VTCVSMGNPHC+TF V
Sbjct: 123 MGQPRLLAGEIPTTLKPAAEK-VIAQPLQVGGRSWSVTCVSMGNPHCITFVE------NV 175
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
++L +GP+FEHH FP R NTEF+E+I P LKMRVWERGAG TLACGTGACA +VA
Sbjct: 176 AAIDLHTLGPQFEHHPAFPQRINTEFIEVIRPDYLKMRVWERGAGMTLACGTGACAALVA 235
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
AVL +E R TV+LPGGPL+IEW V MTGPAE VF G
Sbjct: 236 AVLNDLSEPRATVELPGGPLEIEWSAPGQAVLMTGPAEQVFQG 278
>gi|302772619|ref|XP_002969727.1| hypothetical protein SELMODRAFT_93006 [Selaginella moellendorffii]
gi|300162238|gb|EFJ28851.1| hypothetical protein SELMODRAFT_93006 [Selaginella moellendorffii]
Length = 293
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 163/293 (55%), Positives = 210/293 (71%), Gaps = 23/293 (7%)
Query: 94 VDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPE--MC 151
VDNR S EP+++ E A ++C+RNFG+G+DGVI MPGV+G DYTM I+N DGS+PE MC
Sbjct: 1 VDNRESAEPKLSKEDAVRICNRNFGVGSDGVILVMPGVHGCDYTMHIYNPDGSQPEANMC 60
Query: 152 GNGVRCFARFIAELE--NLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPT 209
GNG+RC ARFI ELE + +S+ +HTGAG I+P +++DG+V VDMG PIL + +PT
Sbjct: 61 GNGIRCMARFIGELEGRTITSNRSYKIHTGAGTIIPTLKEDGQVLVDMGIPILNGNRIPT 120
Query: 210 SLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL-KVDKLNLAEIGPKF 268
L + D +V++ L+VDG W VTCVSMGNPHCVTFG + ++L + L L +IGP F
Sbjct: 121 LLPGHFDGTVIQKPLEVDGKTWLVTCVSMGNPHCVTFGEEHEEHLFDLSTLPLEKIGPLF 180
Query: 269 EHHSVFPARTNTEFVEIISPSQLKMRVWERGAGA------------------TLACGTGA 310
E+H FP +TN EFVE+IS S LK+RVWERGAG TLACGTGA
Sbjct: 181 ENHEKFPQKTNAEFVEVISLSHLKVRVWERGAGKCLEIEALSKELVFFFAGITLACGTGA 240
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
CA VAAVLEG A++ C VDLPGG L++EW+ D+HVYM+GPAE VF G+++L
Sbjct: 241 CAAFVAAVLEGRAKKNCIVDLPGGKLEVEWRASDHHVYMSGPAEHVFTGTLVL 293
>gi|443661751|ref|ZP_21132779.1| diaminopimelate epimerase [Microcystis aeruginosa DIANCHI905]
gi|159029708|emb|CAO87786.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443332237|gb|ELS46856.1| diaminopimelate epimerase [Microcystis aeruginosa DIANCHI905]
Length = 281
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 176/283 (62%), Positives = 207/283 (73%), Gaps = 14/283 (4%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F KY GLGNDFIL+DNR+S EP ITPE A +CDR+FGIGADGVIFA+PG TDYTMRI
Sbjct: 5 FTKYQGLGNDFILIDNRHSPEPLITPEIAVAMCDRHFGIGADGVIFALPGQAATDYTMRI 64
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
FNSDGSEPEMCGNG+RC A+FIA LE N +++ +HT AG I+P ++ + +V VDMG
Sbjct: 65 FNSDGSEPEMCGNGIRCLAQFIARLEANNTIGRTYRIHTLAGTIIPRLEANEQVTVDMGP 124
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P L S++PT+L ++ V+ L+V+G W +TCVSMGNPHCVTF VD L
Sbjct: 125 PQLLGSEIPTTLVKGSEK-VLAVPLEVEGKDWLITCVSMGNPHCVTF---------VDDL 174
Query: 260 N---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
L IGPKFEHH VFP RTN EFVE+I P +KMRVWERGAG TLACGTGACAVVVA
Sbjct: 175 ASIPLETIGPKFEHHPVFPQRTNVEFVEVIGPDYMKMRVWERGAGITLACGTGACAVVVA 234
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
AV +R CTV+LPGG L I W + DN VYMTGPA+ VF G
Sbjct: 235 AVSTAKCDRHCTVELPGGCLQIHWSDTDNRVYMTGPAKAVFEG 277
>gi|302799148|ref|XP_002981333.1| hypothetical protein SELMODRAFT_114596 [Selaginella moellendorffii]
gi|300150873|gb|EFJ17521.1| hypothetical protein SELMODRAFT_114596 [Selaginella moellendorffii]
Length = 293
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 163/293 (55%), Positives = 210/293 (71%), Gaps = 23/293 (7%)
Query: 94 VDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPE--MC 151
VDNR S EP+++ E A ++C+RNFG+G+DGVI MPGV+G DYTM I+N DGS+PE MC
Sbjct: 1 VDNRESPEPKLSKEDAVRICNRNFGVGSDGVILVMPGVHGCDYTMHIYNPDGSQPEANMC 60
Query: 152 GNGVRCFARFIAELE--NLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPT 209
GNG+RC ARFI ELE + +S+ +HTGAG I+P +++DG+V VDMG PIL + +PT
Sbjct: 61 GNGIRCMARFIGELEGRTITSNRSYKIHTGAGTIIPTLKEDGQVLVDMGIPILNGNRIPT 120
Query: 210 SLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL-KVDKLNLAEIGPKF 268
L + D +V++ L+VDG W VTCVSMGNPHCVTFG + ++L + L L +IGP F
Sbjct: 121 LLPGHFDGTVIQKPLEVDGKTWLVTCVSMGNPHCVTFGEEHEEHLFDLSTLPLEKIGPLF 180
Query: 269 EHHSVFPARTNTEFVEIISPSQLKMRVWERGAGA------------------TLACGTGA 310
E+H FP +TN EFVE+IS S LK+RVWERGAG TLACGTGA
Sbjct: 181 ENHEKFPQKTNAEFVEVISLSHLKVRVWERGAGKCLEIEALSKELVFFFAGITLACGTGA 240
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
CA VAAVLEG A++ C VDLPGG L++EW+ D+HVYM+GPAE VF G+++L
Sbjct: 241 CAAFVAAVLEGRAKKNCIVDLPGGKLEVEWRASDHHVYMSGPAEHVFTGTLVL 293
>gi|86608845|ref|YP_477607.1| diaminopimelate epimerase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|123502491|sp|Q2JLR0.1|DAPF_SYNJB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|86557387|gb|ABD02344.1| diaminopimelate epimerase [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 285
Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 163/282 (57%), Positives = 208/282 (73%), Gaps = 4/282 (1%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KY GLGNDFILVDNR ++P ++PE+A LC+R FG+GADGVIF +PG G D++M
Sbjct: 5 LSFHKYQGLGNDFILVDNRWQSQPCLSPEEAVALCNRRFGVGADGVIFLLPGQEGADFSM 64
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
R+FNSDGSE EMCGNG+RC ARF+ +L ++ +HT AG IVP+++ DG V VDMG
Sbjct: 65 RLFNSDGSEAEMCGNGIRCLARFLQDLGIPGRDGAYQIHTLAGRIVPQVRADGLVTVDMG 124
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
P L A +PT+L D+ V++ L V G +W VT VSMGNPHCV F + +++
Sbjct: 125 IPRLLAKQIPTTL-VEPDEKVIRQPLAVAGREWRVTAVSMGNPHCVVFLEE---EGSLEE 180
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
L+LA +GP FEHH FP RTNTEFV+++SP++L++RVWERGAGATLACGTGACAV+VAAV
Sbjct: 181 LDLAAVGPLFEHHPAFPERTNTEFVQVLSPTRLRLRVWERGAGATLACGTGACAVLVAAV 240
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
LE AE + TV+LPGG L+I W HV+MTGPA VF G+
Sbjct: 241 LEERAESQATVELPGGNLEIRWDPSTQHVWMTGPALHVFSGT 282
>gi|303283838|ref|XP_003061210.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457561|gb|EEH54860.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 262
Score = 337 bits (863), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 160/261 (61%), Positives = 196/261 (75%), Gaps = 12/261 (4%)
Query: 112 LCDRNFGIGADGVIFAMPG---------VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 162
+CDRNFGIGADGVI AMP V DY MR+FNSDG+EPEMCGNG+RC A F+
Sbjct: 1 MCDRNFGIGADGVIVAMPKGSAEYPGRVVEEEDYAMRMFNSDGTEPEMCGNGIRCLANFV 60
Query: 163 AELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKS 222
A +++ + +++ V T AGLI PE + DG+V VDMG P L +DVPT L+A +D + VKS
Sbjct: 61 AAIDDAD-PRAYKVGTLAGLIQPECKPDGQVAVDMGVPTLTPADVPTKLAATEDGAAVKS 119
Query: 223 ELDVDGVKWNVTCVSMGNPHCVTFGTKEG--QNLKVDKLNLAEIGPKFEHHSVFPARTNT 280
++ VDG W T VSMGNPHCVTFG ++G + L VD ++LA IGP FE H FPARTNT
Sbjct: 120 QMTVDGATWLATAVSMGNPHCVTFGREKGDEKGLAVDDMDLAAIGPSFESHETFPARTNT 179
Query: 281 EFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEW 340
EFVE++ +KMRVWERGAGATLACGTGACA VVA VLEG +R+CTV+LPGGPL+IEW
Sbjct: 180 EFVEVVRRDYVKMRVWERGAGATLACGTGACATVVAGVLEGRTDRKCTVELPGGPLEIEW 239
Query: 341 KEEDNHVYMTGPAEVVFYGSV 361
+E D+ V MTGPAE+VFYG +
Sbjct: 240 RESDSRVIMTGPAELVFYGEI 260
>gi|425462261|ref|ZP_18841735.1| Diaminopimelate epimerase [Microcystis aeruginosa PCC 9808]
gi|389824671|emb|CCI26150.1| Diaminopimelate epimerase [Microcystis aeruginosa PCC 9808]
Length = 281
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 175/283 (61%), Positives = 206/283 (72%), Gaps = 14/283 (4%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F KY GLGNDFIL+DNR+S EP IT E A +CDR+FGIGADGVIFA+PG TDYTMRI
Sbjct: 5 FTKYQGLGNDFILIDNRHSPEPLITAEMAVAMCDRHFGIGADGVIFALPGQAATDYTMRI 64
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
FNSDGSEPEMCGNG+RC A+FIA LE N +++ +HT AG I+P ++ + +V VDMG
Sbjct: 65 FNSDGSEPEMCGNGIRCLAQFIARLEANNAIGRTYRIHTLAGTIIPRLEANEQVTVDMGP 124
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P L S++PT+L ++ V+ L+V+G W +TCVSMGNPHCVTF VD L
Sbjct: 125 PQLLGSEIPTTLVKGSEK-VLAVPLEVEGKDWLITCVSMGNPHCVTF---------VDDL 174
Query: 260 N---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
L IGPKFEHH VFP RTN EFVE+I P +KMRVWERGAG TLACGTGACAVVVA
Sbjct: 175 ASIPLETIGPKFEHHPVFPQRTNVEFVEVIGPDYMKMRVWERGAGITLACGTGACAVVVA 234
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
AV +R CTV+LPGG L I W + DN VYMTGPA+ VF G
Sbjct: 235 AVSTAKCDRHCTVELPGGCLQIHWSDTDNRVYMTGPAKAVFEG 277
>gi|17131139|dbj|BAB73747.1| diaminopimelate epimerase [Nostoc sp. PCC 7120]
Length = 246
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 156/252 (61%), Positives = 192/252 (76%), Gaps = 8/252 (3%)
Query: 111 KLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLN- 169
++CDR+FGIGADGVIFA+PG NGTDYTMRIFNSDGSEPEMCGNG+RC A F+A+LE L+
Sbjct: 2 EMCDRHFGIGADGVIFALPGENGTDYTMRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSR 61
Query: 170 GKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGV 229
K ++ +HT AG+I P++ DG++KVDMG P L A ++PT+L A D V+ L+V+G
Sbjct: 62 NKDTYRIHTLAGVITPQLTPDGQIKVDMGLPRLLAGEIPTTLGA-ADGKVINQPLEVEGQ 120
Query: 230 KWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPS 289
W VTCVSMGNPHC+TF V + L IGPKFEHH FP RTNTEF++++S
Sbjct: 121 TWEVTCVSMGNPHCITFVED------VAAIPLEIIGPKFEHHPAFPQRTNTEFIQVVSRD 174
Query: 290 QLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYM 349
LKMRVWERGAG TLACGTGACA +VAAVL G ++R TV+LPGGPL+IEW E D +YM
Sbjct: 175 YLKMRVWERGAGITLACGTGACASLVAAVLTGRSDRLATVELPGGPLEIEWSEVDQRIYM 234
Query: 350 TGPAEVVFYGSV 361
TGPA+ VF G +
Sbjct: 235 TGPADRVFTGKL 246
>gi|284929063|ref|YP_003421585.1| diaminopimelate epimerase [cyanobacterium UCYN-A]
gi|284809522|gb|ADB95227.1| diaminopimelate epimerase [cyanobacterium UCYN-A]
Length = 279
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 161/282 (57%), Positives = 204/282 (72%), Gaps = 8/282 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
++F KY GLGNDFIL+DNR+S+E ++ Q K+C+R+FGIGADGVIF + G +DY M
Sbjct: 1 MYFFKYQGLGNDFILIDNRSSSELLLSSGQILKMCNRHFGIGADGVIFLLSGDKVSDYGM 60
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENL-NGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
IFNSDGSEPEMCGNG+RC FI+ LEN + + + T AG+I E+Q +V+V+M
Sbjct: 61 HIFNSDGSEPEMCGNGIRCLISFISNLENFEQTNKIYRIKTLAGIIKAELQTQTQVRVEM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P+ +PT+LS +KD +V+ L+++ W VTCV+MGNPHC+TF E NL
Sbjct: 121 GTPLFLNKQIPTTLS-DKDNTVINYPLEIEKKNWLVTCVNMGNPHCITF--VEDTNL--- 174
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+NL ++GP FE+HS FP R NTEF+EI+ P+ LKMRVWERGAGATLACGTGACA VVA
Sbjct: 175 -INLEKLGPLFEYHSAFPERINTEFIEIVRPNHLKMRVWERGAGATLACGTGACASVVAG 233
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
V+ AER CTV+LPGG L IEW E+ N VYMTG AE VF G
Sbjct: 234 VITNRAERVCTVELPGGNLLIEWVEDSNKVYMTGSAERVFIG 275
>gi|428218636|ref|YP_007103101.1| diaminopimelate epimerase [Pseudanabaena sp. PCC 7367]
gi|427990418|gb|AFY70673.1| diaminopimelate epimerase [Pseudanabaena sp. PCC 7367]
Length = 298
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 163/294 (55%), Positives = 204/294 (69%), Gaps = 22/294 (7%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN------GT 134
F KYHGLGN+FIL+DNR+ EP ++ +A + CDRNFGIGADGVIF +P N G
Sbjct: 5 FSKYHGLGNNFILIDNRHQAEPLLSQAEAIEWCDRNFGIGADGVIFLLPDTNSQESGQGN 64
Query: 135 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELE-------NLNGKQS--FTVHTGAGLIVP 185
+ MRIFNSDGSEPEMCGNGVRC A+F+ +LE NG+ + + + TGAGLI
Sbjct: 65 GHVMRIFNSDGSEPEMCGNGVRCLAKFMQDLEIKPIAADPTNGQPNPHYKLQTGAGLIGL 124
Query: 186 EIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVT 245
++ DG++ VDMGEP L A ++PT+L + ++ + +L+V G W VT VSMGNPHC+T
Sbjct: 125 QLDADGQITVDMGEPHLLAKEIPTTL-VDAEEKAIAIDLEVAGQTWQVTTVSMGNPHCIT 183
Query: 246 FGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLA 305
F V K++LA IGP+FEHHS FP R NTEF+++ + +KM VWERGAGATLA
Sbjct: 184 FIDD------VAKIDLAAIGPQFEHHSAFPQRINTEFIQVRDRNYVKMLVWERGAGATLA 237
Query: 306 CGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
CGTGACAVVVA VL +R+CTV+LPGG L I W E NHV MTGPA VF G
Sbjct: 238 CGTGACAVVVAGVLNNVCDRQCTVNLPGGDLRIHWSETTNHVMMTGPAVKVFTG 291
>gi|22299837|ref|NP_683084.1| diaminopimelate epimerase [Thermosynechococcus elongatus BP-1]
gi|29839316|sp|Q8DGM2.1|DAPF_THEEB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|22296021|dbj|BAC09846.1| diaminopimelate epimerase [Thermosynechococcus elongatus BP-1]
Length = 286
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 161/290 (55%), Positives = 201/290 (69%), Gaps = 14/290 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KY GLGNDF+L+DNR+ E +TPEQA CDR+FG+GADGVIF + G +DY M
Sbjct: 3 LSFQKYQGLGNDFLLIDNRHQEELLLTPEQAQFWCDRHFGVGADGVIFLLRGTGESDYRM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ--SFTVHTGAGLIVPEIQDDGKVKVD 196
R++N+DGS +MCGNG+RC A+FI LE + + + + T AGLIVPE+Q DG+V VD
Sbjct: 63 RMYNADGSVAQMCGNGIRCLAKFIFALEGRSAGEIVRYRIDTLAGLIVPEVQADGQVTVD 122
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG+P L A +PT+L+A DQ VV L V +W VTCVSMGNPHCVTF V
Sbjct: 123 MGKPRLLAQQIPTTLAA-ADQKVVDVPLTVGDRQWLVTCVSMGNPHCVTFVE------DV 175
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
L+LA +GP+FEHH FP RTNTEFV+++ +L+MRVWERGAG TLACGTGACA +VA
Sbjct: 176 AALDLAVLGPQFEHHPAFPQRTNTEFVQVLGSDRLRMRVWERGAGMTLACGTGACATLVA 235
Query: 317 AVLEGHA-----ERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
AVL G + + TV+LPGG L I W H+YMTGPA VF G++
Sbjct: 236 AVLTGCLSPGGDQAQATVELPGGDLQIRWDLPSQHLYMTGPALAVFSGTL 285
>gi|427713734|ref|YP_007062358.1| diaminopimelate epimerase [Synechococcus sp. PCC 6312]
gi|427377863|gb|AFY61815.1| diaminopimelate epimerase [Synechococcus sp. PCC 6312]
Length = 285
Score = 324 bits (830), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 163/284 (57%), Positives = 200/284 (70%), Gaps = 10/284 (3%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGT-DYT 137
L F KY GLGNDFIL+DNR E +T +QA LCDR+FGIGA+GVIF + T DY
Sbjct: 3 LAFSKYQGLGNDFILIDNRQQGELYLTADQAKTLCDRHFGIGANGVIFLCSPADATCDYQ 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQS--FTVHTGAGLIVPEIQDDGKVKV 195
M +FNSDGS EMCGNG+RC A+FIA LE+ Q+ + V T AG++ +Q DG+V V
Sbjct: 63 MAMFNSDGSVAEMCGNGIRCLAKFIAALESHAPDQAWIYRVETLAGVMTLNLQTDGRVSV 122
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
+MG P L AS++PT+LS + DQ V+ L++ G W +TCVSMGNPH +TF
Sbjct: 123 NMGTPKLLASEIPTTLS-DPDQKVIDVPLELAGQTWQLTCVSMGNPHAITFVEN------ 175
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
V + LAE+GP+FEHHS+FP RTNTEFVE+I P LKMRVWERGAGATLACGTGACA VV
Sbjct: 176 VAAIPLAELGPRFEHHSMFPQRTNTEFVEVIRPDYLKMRVWERGAGATLACGTGACATVV 235
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
A VL A + TV+LPGG LDI+W++ +YMTGPA VF G
Sbjct: 236 AGVLTQRALPQATVELPGGCLDIDWQQTTQAIYMTGPANHVFDG 279
>gi|86606001|ref|YP_474764.1| diaminopimelate epimerase [Synechococcus sp. JA-3-3Ab]
gi|123506579|sp|Q2JUV6.1|DAPF_SYNJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|86554543|gb|ABC99501.1| diaminopimelate epimerase [Synechococcus sp. JA-3-3Ab]
Length = 285
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 163/282 (57%), Positives = 207/282 (73%), Gaps = 4/282 (1%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KY GLGNDFILVDNR+ +P +TPE+A LC+R FG+GADGVIF +PG G D++M
Sbjct: 5 LSFHKYQGLGNDFILVDNRHQPQPCLTPEEAVALCNRRFGVGADGVIFLLPGQEGADFSM 64
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
R+FNSDGSE EMCGNG+RC ARF+ +L ++ +HT AG IVP+++ DG V VDMG
Sbjct: 65 RLFNSDGSEAEMCGNGIRCLARFLQDLGIPGQDGAYQIHTLAGRIVPQVRPDGLVTVDMG 124
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
P L A +PT+L A ++ VV+ L V G +W VT VSMGNPHCV F +EG +L ++
Sbjct: 125 IPRLLAGQIPTTL-AKPEEKVVRQPLQVGGREWAVTAVSMGNPHCVVF-LEEGGSL--EE 180
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
L+L +GP FEHH FP RTNTEF +++ P+ L++RVWERGAG TLACGTGACA +VAAV
Sbjct: 181 LDLERVGPLFEHHPAFPERTNTEFAQVLGPNYLRLRVWERGAGVTLACGTGACAALVAAV 240
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
LE AE + TV+LPGG L+I W + HV+MTGPA VF G+
Sbjct: 241 LEERAEPQATVELPGGNLEIRWDPDTQHVWMTGPALPVFSGT 282
>gi|282895566|ref|ZP_06303700.1| Diaminopimelate epimerase [Raphidiopsis brookii D9]
gi|281199406|gb|EFA74270.1| Diaminopimelate epimerase [Raphidiopsis brookii D9]
Length = 244
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 148/251 (58%), Positives = 186/251 (74%), Gaps = 8/251 (3%)
Query: 112 LCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLN-G 170
+CDR+FGIGADGVIFA+PG GTDYTMRIFNSDGSEPEMCGNG+RC A F+ ELE ++
Sbjct: 1 MCDRHFGIGADGVIFALPGQKGTDYTMRIFNSDGSEPEMCGNGIRCLAAFLTELEGISRS 60
Query: 171 KQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVK 230
K + +HT AG+I P++ DDG+VKVDMG P L A ++PT+L D V+ L++
Sbjct: 61 KDYYLIHTLAGIIRPQLTDDGQVKVDMGSPRLLAQEIPTTLVPG-DSKVINLPLEIGKQT 119
Query: 231 WNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQ 290
W++TCVSMGNPHC+TF V + + IGP+FEHH VFP RTNTEF+++++PS
Sbjct: 120 WHITCVSMGNPHCITFVED------VASIPVEIIGPQFEHHPVFPQRTNTEFIQVVNPSH 173
Query: 291 LKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMT 350
LKMRVWERGAG TLACGTGACA +VA VL +R T++LPGG L+I+W E D +YMT
Sbjct: 174 LKMRVWERGAGITLACGTGACASLVAGVLNNLCDRMATIELPGGNLEIQWSETDQRIYMT 233
Query: 351 GPAEVVFYGSV 361
GPAE VF G +
Sbjct: 234 GPAERVFTGKI 244
>gi|323453409|gb|EGB09281.1| hypothetical protein AURANDRAFT_24874 [Aureococcus anophagefferens]
Length = 311
Score = 316 bits (810), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 158/290 (54%), Positives = 191/290 (65%), Gaps = 11/290 (3%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KY GLGNDF+LVDNR+S P+ +P +AA LCDRNFG+GADGVIF MPG NG D+ M
Sbjct: 25 LAFSKYQGLGNDFLLVDNRDSATPKASPAEAAALCDRNFGVGADGVIFVMPGENGADFKM 84
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGK----QSFTVHTGAGLIVPEIQDDGKVK 194
I+NSD SEPEMCGNG+RC AR++ EL K + FT+ TGAG IVP ++ DG +
Sbjct: 85 TIYNSDSSEPEMCGNGIRCLARYLGELGCEGAKDGDDEVFTIATGAGPIVPVVRGDGLIT 144
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMGEP L VP +L+ VV + L+ G + VT VSMGNPH V F
Sbjct: 145 VDMGEPELAGPKVPCALAPTDGDRVVDAALEAGGATYAVTAVSMGNPHSVAFVD------ 198
Query: 255 KVDKLNLAEIGPKFEHHS-VFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
++L G E ++ FP + N EFV+++ S + M VWERG G TLACGTGACAV
Sbjct: 199 DAKAVDLGVTGKAVELNTDAFPEKVNAEFVDVVDRSHVNMVVWERGCGVTLACGTGACAV 258
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA VL G +R C V LPGGPL+IEW+E DN VYMTGPAE VF GS L
Sbjct: 259 GVAGVLTGRTDRTCEVMLPGGPLEIEWRESDNKVYMTGPAEFVFSGSAPL 308
>gi|37520384|ref|NP_923761.1| diaminopimelate epimerase [Gloeobacter violaceus PCC 7421]
gi|35211377|dbj|BAC88756.1| diaminopimelate epimerase [Gloeobacter violaceus PCC 7421]
Length = 283
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/286 (53%), Positives = 193/286 (67%), Gaps = 13/286 (4%)
Query: 77 GFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
G L FVKY GLGNDF+L+DNR + EP ++ E+AA +CDR+FG+GADGVIF + G D+
Sbjct: 6 GTLSFVKYEGLGNDFVLIDNRTAAEPVLSAEEAAAVCDRHFGVGADGVIFLLSAETGADF 65
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
MRI+N+DGSE +MCGNG+RC A F EL + V TGAGL+ ++ DG+V+VD
Sbjct: 66 RMRIYNNDGSEAQMCGNGIRCLAHFARELGMGGTGSGYRVETGAGLLNIDLLADGRVRVD 125
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L A ++PT+L A DQ V + + V GV W VTCV+MGNPH V F V
Sbjct: 126 MGPPHLLADEIPTTL-APADQKAVAASIPVGGVDWRVTCVNMGNPHAVVF---------V 175
Query: 257 DKL---NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+L +L GP FE FP R NT F E+ISP+ L+++ WERGAG TLACGTGACAV
Sbjct: 176 DELATVDLHRFGPLFERDRHFPERVNTHFAEVISPTHLRVKAWERGAGPTLACGTGACAV 235
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
+VAAVL G + TV+LPGGP++I W NH+ MTGPA VF G
Sbjct: 236 LVAAVLNGLSHTEATVELPGGPIEIRWDGATNHLLMTGPARKVFSG 281
>gi|224013704|ref|XP_002296516.1| diaminopimelate epimerase [Thalassiosira pseudonana CCMP1335]
gi|220968868|gb|EED87212.1| diaminopimelate epimerase [Thalassiosira pseudonana CCMP1335]
Length = 323
Score = 310 bits (794), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 158/323 (48%), Positives = 217/323 (67%), Gaps = 15/323 (4%)
Query: 48 SFRVSASSMSSIHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPE 107
S ++ASS + + ++ L+ + + F KY GLGNDFIL+D+R+ PR+TPE
Sbjct: 8 SLLMAASSEAFATLSSQRTSSTSLNAKLGDSIEFAKYEGLGNDFILIDDRDRETPRLTPE 67
Query: 108 QAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELEN 167
Q+ +LC+RNFG+G DGVIFA+ D+TMRI+NSDGSEPEMCGNG+RCFA+F+ +L
Sbjct: 68 QSERLCNRNFGVGGDGVIFALKAPQDYDFTMRIYNSDGSEPEMCGNGIRCFAQFLKDLG- 126
Query: 168 LNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVV--KSELD 225
+S+ V+T AG IVPE+ D + VDMGEPIL VPT+L+ N + + V ++ +D
Sbjct: 127 -EDAKSYKVNTLAGPIVPEMNPD-TITVDMGEPILDGPSVPTTLAPNSEHNSVLEQTHVD 184
Query: 226 VDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHS-VFPARTNTEFVE 284
+G +W ++ VSMGNPH + F +L+ D ++ A GP E + FPA+TN EFV+
Sbjct: 185 KNGKEWKISAVSMGNPHAIIF----VDDLEKD-IDFAVDGPALESDTGAFPAKTNVEFVQ 239
Query: 285 IISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERR----CTVDLPGGPLDIEW 340
++SP+ LKM+VWERGAG TLACGTG CA+VVAA+ R V LPGG L IEW
Sbjct: 240 VMSPNHLKMKVWERGAGPTLACGTGTCALVVAAIRANKIPRPGKEGVRVTLPGGDLFIEW 299
Query: 341 KEEDNHVYMTGPAEVVFYGSVLL 363
+EE+N +YMTGPA + F G+ LL
Sbjct: 300 REENNRIYMTGPATLSFKGTALL 322
>gi|397634098|gb|EJK71279.1| hypothetical protein THAOC_07303 [Thalassiosira oceanica]
Length = 334
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 161/341 (47%), Positives = 226/341 (66%), Gaps = 19/341 (5%)
Query: 31 SYSLTRPFGSNLTLKVPSFRVSASSMSSIHAPESASRTSFLDRRESGFLHFVKYHGLGND 90
S+ L + ++ + +F ++S ++H S S L+ + F KY GLGND
Sbjct: 4 SHPLVLGAAAVISTETDAFTFKSTSSRNLHRGGS----SLLEAAPGEHITFAKYEGLGND 59
Query: 91 FILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAM--PGVNGTDYTMRIFNSDGSEP 148
FIL+D+R P +TP+Q+ +LC+RNF +G DGVIFA+ P D+TMRI+NSDGSEP
Sbjct: 60 FILIDDREREAPSLTPDQSERLCNRNFCVGGDGVIFALKAPEDGDYDFTMRIYNSDGSEP 119
Query: 149 EMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVP 208
EMCGNG+RC+A+F+ +L ++S+ ++T AGLI+PE+++DG + VDMGEPIL VP
Sbjct: 120 EMCGNGIRCYAQFLKDLGA--DQKSYRINTLAGLIIPEMKEDGNICVDMGEPILDGPTVP 177
Query: 209 TSLSANKD-QSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPK 267
T+L+ N + SV++ +G +W ++ VSMGNPH + F +L+ D ++ + GP
Sbjct: 178 TTLAPNSEGNSVLEQVHTCNGKEWKISMVSMGNPHAIIFV----DDLEKD-IDFEKDGPA 232
Query: 268 FEHH-SVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAER- 325
E SVFPA+TN EFV+++SP+ LKM+VWERGAG TLACGTG CA+VVAA+ G R
Sbjct: 233 LESDTSVFPAKTNVEFVQVMSPTHLKMKVWERGAGPTLACGTGTCALVVAAIRAGKIPRP 292
Query: 326 ---RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V LPGG L IEW+EE+N VYMTGPA + F GS +L
Sbjct: 293 GKEGVRVTLPGGDLFIEWREENNKVYMTGPATLSFQGSAVL 333
>gi|219116604|ref|XP_002179097.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409864|gb|EEC49795.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 334
Score = 306 bits (784), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 159/310 (51%), Positives = 208/310 (67%), Gaps = 20/310 (6%)
Query: 61 APESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIG 120
A S RT+ R+ + F KYHGLGNDFIL+D+R+ +EP +TPE++A LC RNFGIG
Sbjct: 30 ASTSLRRTTLEARK----VPFSKYHGLGNDFILIDDRDKSEPSLTPEESAMLCHRNFGIG 85
Query: 121 ADGVIFAM--PGVNGT----DYTMRIFNSDGSEPEMCGNGVRCFARFIAEL-ENLNGKQS 173
DGVIFA+ P +G D+TMRI+NSDGSEPEMCGNG+RC A+F+ +L E+ + +
Sbjct: 86 GDGVIFALQPPSESGDGADFDFTMRIYNSDGSEPEMCGNGIRCMAQFLKDLGESKSDDGA 145
Query: 174 FTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQ-SVVKSELDVDGVKWN 232
+ +HT AG IVP + +DG + VDMGEP L+A+ VPT+L AN + SVV+ L+ +G W
Sbjct: 146 YQIHTLAGRIVPVMNEDGTITVDMGEPFLEAAKVPTTLEANAEHDSVVEQTLEANGKTWK 205
Query: 233 VTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLK 292
T V MGNPH + F +L+ D ++ + GP E H FPA+TN EFV++ L
Sbjct: 206 CTAVGMGNPHAIFF----VNDLEKD-IDFEKDGPALEAHESFPAKTNVEFVQVKGDDHLI 260
Query: 293 MRVWERGAGATLACGTGACAVVVAAVLEG---HAERRCTVDLPGGPLDIEWKEEDNHVYM 349
M+VWERGAG TLACGTGACA+ VAA+ G ++ V LPGG L IEW+E DN +YM
Sbjct: 261 MKVWERGAGPTLACGTGACALTVAAMRAGKIPRGDQPVRVTLPGGDLWIEWRESDNKIYM 320
Query: 350 TGPAEVVFYG 359
TGPA F G
Sbjct: 321 TGPATFAFAG 330
>gi|317969888|ref|ZP_07971278.1| diaminopimelate epimerase [Synechococcus sp. CB0205]
Length = 341
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 143/288 (49%), Positives = 186/288 (64%), Gaps = 11/288 (3%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPR----ITPEQAAKLCDRNFGIGADGVIFAMPGVNG 133
F KY GLGNDF+++D R S + +TPE +LCDR FG+G DGVI A+P G
Sbjct: 1 MFQFSKYQGLGNDFLMLDGRQSGDTDFLFGLTPELVVQLCDRRFGVGGDGVILALPPNGG 60
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKV 193
+ MRIFN+DG+EPEMCGNG+RC ARF+A+ + +++ V T AG IVPE+ DG +
Sbjct: 61 GELRMRIFNADGTEPEMCGNGIRCLARFLADCDGDGPGRTWQVDTLAGRIVPELLPDGTI 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+VDMG P LK S++PT+L + + EL++DG ++ V MGNPH V
Sbjct: 121 RVDMGAPFLKPSEIPTTLEVG-EAGLPSGELEIDGERFAVAAAGMGNPHVVV------PV 173
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
VD+++L G + E H FPA+TN FVE++SPS L MRVWERGAG TLACGTGACA
Sbjct: 174 DSVDEIDLERFGSQLEIHPAFPAKTNVHFVEVLSPSHLVMRVWERGAGPTLACGTGACAT 233
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+VA G +ER +DLPGGPL I W + V+M GPAE VF GS+
Sbjct: 234 LVACHRLGLSERTARIDLPGGPLQIHWDAMNGKVFMDGPAEHVFDGSI 281
>gi|427701890|ref|YP_007045112.1| diaminopimelate epimerase [Cyanobium gracile PCC 6307]
gi|427345058|gb|AFY27771.1| diaminopimelate epimerase [Cyanobium gracile PCC 6307]
Length = 369
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 142/287 (49%), Positives = 185/287 (64%), Gaps = 11/287 (3%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPR----ITPEQAAKLCDRNFGIGADGVIFAMPGVNGT 134
L F KY GLGNDF+L+D R+ +P +TPE+ +LCDR FG+G DGVI A+P G
Sbjct: 5 LQFSKYQGLGNDFLLLDGRSLEDPEGLFGLTPERVQRLCDRRFGVGGDGVILALPPREGG 64
Query: 135 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVK 194
+ MRIFN+DG+EPEMCGNG+RC ARF+A+ + +S+ + T AG +VP + +DG+++
Sbjct: 65 ELRMRIFNADGTEPEMCGNGIRCLARFLADSDGDQAPRSWEIETLAGRMVPALAEDGRIR 124
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG P L VPT+L+ +Q + EL+V G + V MGNPH V
Sbjct: 125 VDMGPPFLTPESVPTTLAVG-EQGLPVGELEVLGQRLAVAAAGMGNPHAVV------PVA 177
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V ++L +G E H FPARTN FV++++P L MRVWERGAG TLACGTGACA +
Sbjct: 178 DVAAIDLEGLGAALELHGAFPARTNVHFVQVLAPDHLVMRVWERGAGPTLACGTGACATL 237
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA G A R +DLPGGPL+I W + HV+MTGPAE VF G V
Sbjct: 238 VACHRLGLAARHARLDLPGGPLEIHWDKASGHVFMTGPAEAVFDGVV 284
>gi|148242289|ref|YP_001227446.1| diaminopimelate epimerase [Synechococcus sp. RCC307]
gi|147850599|emb|CAK28093.1| Diaminopimelate epimerase [Synechococcus sp. RCC307]
Length = 357
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 141/279 (50%), Positives = 180/279 (64%), Gaps = 9/279 (3%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F KY GLGNDFIL+D R + P + + A +LCDR FGIG DG+I A+P G D M+I
Sbjct: 19 FRKYQGLGNDFILMDGRTTPLPEMGGDPAKELCDRRFGIGGDGLILALPPQQGGDVRMQI 78
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 200
N+DGSE EMCGNG+RCFARF+A+L+ + V T AGL++P + + +V VDMGEP
Sbjct: 79 LNADGSEAEMCGNGIRCFARFLADLDGSASGTQWRVETPAGLMIPRLLEGDQVTVDMGEP 138
Query: 201 ILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLN 260
L+ + +PT+L+A + EL V G+ V V MGNPH V Q ++ L+
Sbjct: 139 FLEPASIPTNLAAGT--PLPDGELQVAGISLQVAAVGMGNPHAVV------QVDDLESLD 190
Query: 261 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLE 320
+GP E H FPARTN FV++ +P QL++RVWERGAG TLACGTGACA VVA L
Sbjct: 191 FDRLGPALEQHPAFPARTNVHFVQVHAPDQLQVRVWERGAGPTLACGTGACATVVATHLR 250
Query: 321 GHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
G R+ TV LPGGPL I+W + NH+ M GPA VF G
Sbjct: 251 GACARQATVQLPGGPLQIDW-DSTNHIQMAGPAVFVFEG 288
>gi|449018716|dbj|BAM82118.1| diaminopimelate epimerase [Cyanidioschyzon merolae strain 10D]
Length = 418
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 153/336 (45%), Positives = 192/336 (57%), Gaps = 51/336 (15%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+L FVKY GLGNDFILVD R P + QA +LCDR+ GIGADGVI +P ++ G D+
Sbjct: 81 WLQFVKYEGLGNDFILVDQRKCAWPEVDTAQAVRLCDRHRGIGADGVILLLPAISSGADF 140
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLN----------GKQSFTVHTGAGLIVPE 186
+RI N+DGSEPEMCGNG+RC A++ ++ N + G + ++ TGAG I P
Sbjct: 141 RVRIVNADGSEPEMCGNGIRCVAKYAVDVCNDSAAGPNEASTFGDGALSIETGAGYIRPR 200
Query: 187 IQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDV--DGVK-------------- 230
+ DG+V VDMG PIL VPT+L ++ + VK+ ++V DG
Sbjct: 201 VLSDGRVCVDMGPPILDPQCVPTTLPGSRRIADVKAAVEVPLDGSTAEDIAAARLPLPPP 260
Query: 231 ---------WNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTE 281
W T VSMGNPHCV F + + NL IGP FE H FP RTNTE
Sbjct: 261 ECCGASEFVWRCTAVSMGNPHCVIF--VDQKTFAWVDANLERIGPMFETHHCFPRRTNTE 318
Query: 282 FVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERR-------------CT 328
F+E+ P L+M VWERGAG T+ACGTGACA VVAA + G + C
Sbjct: 319 FIEVCGPRDLRMSVWERGAGRTMACGTGACAAVVAATISGRIPSQGAGASGDPVSADACV 378
Query: 329 VDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
V LPGG L+I W E+ HVYMTGPA V+ G LL
Sbjct: 379 VHLPGGDLEIYWSPENRHVYMTGPANFVYRGECLLE 414
>gi|318041442|ref|ZP_07973398.1| diaminopimelate epimerase [Synechococcus sp. CB0101]
Length = 395
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 143/298 (47%), Positives = 188/298 (63%), Gaps = 13/298 (4%)
Query: 64 SASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPR----ITPEQAAKLCDRNFGI 119
S S+T F + L F KY GLGNDF+++D R++++P +TPE +LCDR FG+
Sbjct: 3 SPSKTPFSSLQAE--LSFSKYQGLGNDFLMLDGRSASDPDFVFGLTPELVIELCDRRFGV 60
Query: 120 GADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTG 179
G DGVI A+P NG + MRIFN+DG+EPEMCGNG+RC ARF+A+ + +++ + T
Sbjct: 61 GGDGVILALPANNGGELRMRIFNADGTEPEMCGNGIRCLARFLADRDGDGAGRTWQIDTL 120
Query: 180 AGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMG 239
AG IVPE+ DG ++VDMG P L + VPT+L + + ELDVDG + V MG
Sbjct: 121 AGRIVPELLPDGTIRVDMGAPFLHSDQVPTTLPVGA-AGLPQGELDVDGEVFAVAAAGMG 179
Query: 240 NPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERG 299
NPH V V++++L G E H FPA+TN FV+++SP L MRVWERG
Sbjct: 180 NPHVVI------PVPLVEEIDLERFGALLEVHPAFPAKTNVHFVQVLSPDHLVMRVWERG 233
Query: 300 AGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVF 357
AG TLACGTGACA +V+ G +RR +DLPGGPL I W V+M GPAE VF
Sbjct: 234 AGPTLACGTGACATLVSCHSLGLCDRRARLDLPGGPLQIHWDASSGKVFMDGPAEHVF 291
>gi|375085321|ref|ZP_09731968.1| diaminopimelate epimerase [Megamonas funiformis YIT 11815]
gi|374567453|gb|EHR38668.1| diaminopimelate epimerase [Megamonas funiformis YIT 11815]
Length = 276
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 145/282 (51%), Positives = 186/282 (65%), Gaps = 17/282 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+F K+ GNDF+LV+ N+ + A K+CDR+FG+GADGVIF +P D+ M
Sbjct: 3 FNFSKWQACGNDFVLVNAFNNEDISEIIANAEKICDRHFGVGADGVIFILPS-KVADFRM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
+I NSDGSE EMCGNG+RCFA+ + E NL K FTV TGAG+IVPEI +DG V VDMG
Sbjct: 62 QIINSDGSEAEMCGNGIRCFAKCVKEA-NLTDKNKFTVETGAGIIVPEIMEDGTVHVDMG 120
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
EPIL+ +P S N VV ++ VD + +TCVSMGNPHC+ F VD
Sbjct: 121 EPILEGDKIPVSGFGN--NQVVNEDITVDSQTYKMTCVSMGNPHCIVF---------VDD 169
Query: 259 LN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+N L +IGPKFE + VFP +TNTEFVE+ + ++MRVWERGAG T ACGTG+CA +V
Sbjct: 170 INSVELEKIGPKFETNPVFPKKTNTEFVEVKNDKYVRMRVWERGAGITWACGTGSCATLV 229
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVF 357
A VL +R ++L GG L I+W ++N +YMTGPA VF
Sbjct: 230 ACVLNKRTQRTAQIELDGGILTIQWA-DNNRIYMTGPATKVF 270
>gi|125975578|ref|YP_001039488.1| diaminopimelate epimerase [Clostridium thermocellum ATCC 27405]
gi|256005917|ref|ZP_05430862.1| diaminopimelate epimerase [Clostridium thermocellum DSM 2360]
gi|281416590|ref|ZP_06247610.1| diaminopimelate epimerase [Clostridium thermocellum JW20]
gi|385778017|ref|YP_005687182.1| diaminopimelate epimerase [Clostridium thermocellum DSM 1313]
gi|419721592|ref|ZP_14248752.1| Diaminopimelate epimerase [Clostridium thermocellum AD2]
gi|419727142|ref|ZP_14254147.1| Diaminopimelate epimerase [Clostridium thermocellum YS]
gi|254767097|sp|A3DK16.1|DAPF_CLOTH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|125715803|gb|ABN54295.1| diaminopimelate epimerase [Clostridium thermocellum ATCC 27405]
gi|255990121|gb|EEU00258.1| diaminopimelate epimerase [Clostridium thermocellum DSM 2360]
gi|281407992|gb|EFB38250.1| diaminopimelate epimerase [Clostridium thermocellum JW20]
gi|316939697|gb|ADU73731.1| diaminopimelate epimerase [Clostridium thermocellum DSM 1313]
gi|380769465|gb|EIC03380.1| Diaminopimelate epimerase [Clostridium thermocellum YS]
gi|380782386|gb|EIC12024.1| Diaminopimelate epimerase [Clostridium thermocellum AD2]
Length = 280
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 152/291 (52%), Positives = 193/291 (66%), Gaps = 18/291 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HGLGND+I V+ T + E A K+ DR+FGIG+DG++ MP D+ M
Sbjct: 1 MRFTKMHGLGNDYIYVNCFEETVENPS-EVAKKVSDRHFGIGSDGLVLIMPS-ERADFKM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGK---VK 194
R+FNSDGSE EMCGN +RC +++ + + K V T AG+ V E+ DGK VK
Sbjct: 59 RMFNSDGSEAEMCGNAIRCVGKYVFD-RGMTNKNVIRVETLAGIKVLELTVQDGKAKLVK 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSE-LDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMGEPILK ++P N D+ + ++E +++DG ++ VTCVSMGNPH V++
Sbjct: 118 VDMGEPILKPENIPV----NSDKEIFRTEPVEIDGKEFKVTCVSMGNPHAVSYVKN---- 169
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
VD L +IGPK EHH +FP R N EFVE+I + LKMRVWERGAG TLACGTGACAV
Sbjct: 170 --VDIFPLEKIGPKMEHHPLFPKRINAEFVEVIDRTTLKMRVWERGAGETLACGTGACAV 227
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
+VA+VL G +ER+ TV L GG L IEW E +NHVYMTGPA VF G V LN
Sbjct: 228 LVASVLNGVSERKATVKLLGGDLIIEWNENNNHVYMTGPAVKVFEGEVDLN 278
>gi|217072530|gb|ACJ84625.1| unknown [Medicago truncatula]
Length = 221
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 139/218 (63%), Positives = 173/218 (79%), Gaps = 8/218 (3%)
Query: 1 MAITTTRSLSVTPVTRRSATPINPLRSSSLSYSLT-RPFGSNLTLKVPSFRVSA--SSMS 57
MAIT T S+S+T TRRS + IN + SS S S T +P T K P+ R+ A SSM
Sbjct: 1 MAITATISVSITTPTRRSLSSINSILPSSRSISATPQP-----TFKYPNSRLVALASSMK 55
Query: 58 SIHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNF 117
+ ++ + TSFL +ESGFLHF KYHGLGNDF+L+DNR+S+EP+I+ E+A +LCDRNF
Sbjct: 56 TETPIKTTTSTSFLHHKESGFLHFAKYHGLGNDFVLIDNRDSSEPKISSEKAVQLCDRNF 115
Query: 118 GIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVH 177
G+GADGVIF +PG++GTDYTMRIFNSDGSEPEMCGNGVRCFA+F+++LE+L G+ SFT+H
Sbjct: 116 GVGADGVIFVLPGIDGTDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLESLYGRHSFTIH 175
Query: 178 TGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANK 215
TGAG IVPE+ DG V+VDMGEP+LKASDVPT LS NK
Sbjct: 176 TGAGKIVPEVLGDGNVRVDMGEPVLKASDVPTKLSPNK 213
>gi|254430557|ref|ZP_05044260.1| diaminopimelate epimerase [Cyanobium sp. PCC 7001]
gi|197625010|gb|EDY37569.1| diaminopimelate epimerase [Cyanobium sp. PCC 7001]
Length = 394
Score = 283 bits (724), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 143/299 (47%), Positives = 181/299 (60%), Gaps = 26/299 (8%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPR-------------------ITPEQAAKLCDRNFG 118
L + KY GLGNDF++VD R +T+ +TPE+ +LCDR FG
Sbjct: 1 MLQYCKYQGLGNDFLMVDGRGATDAATDVATEAATETPTDDTCLGLTPERIRRLCDRRFG 60
Query: 119 IGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 178
IGADG+I A P G + MRIFN+DGSEPEMCGNG+RC ARF+A+ + + + V T
Sbjct: 61 IGADGLIVAAPPREGGELRMRIFNADGSEPEMCGNGIRCLARFLADSDGDLPGRRWQVET 120
Query: 179 GAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSM 238
AG IVPE+Q DG V+VDMG+P L VPT+L D + + L+ G + V M
Sbjct: 121 LAGRIVPELQPDGSVRVDMGQPFLAPETVPTTLEIG-DAGIPQGSLEAAGESFQVGAAGM 179
Query: 239 GNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWER 298
GNPH V ++ ++L G E H FPARTN FV++++P+ L MRVWER
Sbjct: 180 GNPHVVI------PVPDLEAVDLERFGAALEVHPAFPARTNVHFVQVLTPAHLVMRVWER 233
Query: 299 GAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVF 357
GAG TLACGTGACA +V G AER +DLPGGPL I W D+HV+MTGPAE VF
Sbjct: 234 GAGPTLACGTGACATLVVCHALGLAERSARLDLPGGPLQISWDPADDHVWMTGPAEAVF 292
>gi|421074241|ref|ZP_15535281.1| Diaminopimelate epimerase [Pelosinus fermentans JBW45]
gi|392527747|gb|EIW50833.1| Diaminopimelate epimerase [Pelosinus fermentans JBW45]
Length = 278
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 146/290 (50%), Positives = 194/290 (66%), Gaps = 20/290 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITP--EQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+F K+HGLGNDF++V N E +I E A ++CDR FGIGADG++ +P D+
Sbjct: 3 FNFSKWHGLGNDFVIV---NGLEEKINNYNEMAIQVCDRYFGIGADGLVVILPSAI-ADF 58
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ--DD--GK 192
MRIFNSDGSE EMCGN RC AR++ E L K+ T+ T AGLI PE+ DD
Sbjct: 59 QMRIFNSDGSEAEMCGNVTRCIARYVFEY-GLTNKKKITLETKAGLIKPELIFIDDVLST 117
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
++VDMGEP LK ++P + N+D+ VV L++DG + +T VSMGNPHC+ F
Sbjct: 118 IRVDMGEPRLKRGELP--MVGNEDEQVVDEVLEIDGTEHRITGVSMGNPHCILFVDD--- 172
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
+ +NL++IG K E H+ FP +TN EFV++++ +L+MRVWERGAG T+ACGTGACA
Sbjct: 173 ---ITGINLSDIGAKIETHAAFPKKTNVEFVQVLNKQELRMRVWERGAGVTMACGTGACA 229
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
+VAAVL G +R+ TV+L GG L IEW DNH+YM+GPA VF G+ L
Sbjct: 230 TLVAAVLNGKTDRQATVELDGGQLLIEWG-SDNHIYMSGPAVEVFRGTYL 278
>gi|392960494|ref|ZP_10325962.1| Diaminopimelate epimerase [Pelosinus fermentans DSM 17108]
gi|421054749|ref|ZP_15517714.1| diaminopimelate epimerase [Pelosinus fermentans B4]
gi|421061520|ref|ZP_15523835.1| Diaminopimelate epimerase [Pelosinus fermentans B3]
gi|421066827|ref|ZP_15528381.1| Diaminopimelate epimerase [Pelosinus fermentans A12]
gi|421071612|ref|ZP_15532728.1| Diaminopimelate epimerase [Pelosinus fermentans A11]
gi|392440430|gb|EIW18110.1| diaminopimelate epimerase [Pelosinus fermentans B4]
gi|392446877|gb|EIW24148.1| Diaminopimelate epimerase [Pelosinus fermentans A11]
gi|392449271|gb|EIW26400.1| Diaminopimelate epimerase [Pelosinus fermentans B3]
gi|392453107|gb|EIW30011.1| Diaminopimelate epimerase [Pelosinus fermentans A12]
gi|392455071|gb|EIW31878.1| Diaminopimelate epimerase [Pelosinus fermentans DSM 17108]
Length = 278
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 146/290 (50%), Positives = 193/290 (66%), Gaps = 20/290 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITP--EQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+F K+HGLGNDF++V N E +I E A ++CDR FGIGADG++ +P D+
Sbjct: 3 FNFSKWHGLGNDFVIV---NGLEEKIDNYNEMAIQVCDRYFGIGADGLVVILPSAV-ADF 58
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDD--GK 192
MRIFNSDGSE EMCGN RC AR++ E L K+ T+ T AGLI PE+ DD
Sbjct: 59 QMRIFNSDGSEAEMCGNVTRCIARYVFEY-GLTNKKKITLETKAGLIKPELIFMDDVLST 117
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
++VDMGEP LK ++P + N+D+ VV L++DG + +T VSMGNPHC+ F
Sbjct: 118 IRVDMGEPRLKRGELP--MVGNEDEQVVNEVLEIDGTEHRITGVSMGNPHCILFVDD--- 172
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
+ +NL++IG K E H+ FP +TN EFV++++ L+MRVWERGAG T+ACGTGACA
Sbjct: 173 ---ITGINLSDIGAKIETHAAFPKKTNVEFVQVLNKQNLRMRVWERGAGVTMACGTGACA 229
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
+VAAVL G +R+ TV+L GG L IEW DNH+YM+GPA VF G+ L
Sbjct: 230 TLVAAVLNGKTDRQATVELDGGQLLIEWG-SDNHIYMSGPAVEVFRGTYL 278
>gi|89895489|ref|YP_518976.1| hypothetical protein DSY2743 [Desulfitobacterium hafniense Y51]
gi|89334937|dbj|BAE84532.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 287
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 149/290 (51%), Positives = 183/290 (63%), Gaps = 18/290 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI--TPEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ VK HGLGNDF+ +D+ + PE A KLC R FG+G DG+I +P + D
Sbjct: 5 MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIMVLPS-DKADA 63
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
MRI NSDGSEPEMCGNG+RCFAR+I + + K V T AG++ ++ G
Sbjct: 64 RMRILNSDGSEPEMCGNGIRCFARYIYD-QGYVSKNPLQVETLAGILTLQLSITGDQVTG 122
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V+VDMGEPILK+ VP + + VV + LDVDG ++ T VSMGNPHCV F
Sbjct: 123 VRVDMGEPILKSEQVPVLIQGD---PVVGARLDVDGQEFEFTAVSMGNPHCVLFVED--- 176
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
+ L+ IGP E H +FP +TN EF+ + SP +L M+VWERGAG TLACGTGACA
Sbjct: 177 ---YETLDFERIGPAIEKHPLFPRKTNVEFIIVNSPRELTMKVWERGAGPTLACGTGACA 233
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VVAAVL G ER+ TV LPGG L IEW EDN VYMTGPA VF G +L
Sbjct: 234 SVVAAVLNGRTERKVTVHLPGGDLLIEWG-EDNRVYMTGPAAYVFKGVLL 282
>gi|423074089|ref|ZP_17062823.1| diaminopimelate epimerase [Desulfitobacterium hafniense DP7]
gi|361855083|gb|EHL07088.1| diaminopimelate epimerase [Desulfitobacterium hafniense DP7]
Length = 291
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 149/290 (51%), Positives = 183/290 (63%), Gaps = 18/290 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI--TPEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ VK HGLGNDF+ +D+ + PE A KLC R FG+G DG+I +P + D
Sbjct: 9 MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIMVLPS-DKADA 67
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
MRI NSDGSEPEMCGNG+RCFAR+I + + K V T AG++ ++ G
Sbjct: 68 RMRILNSDGSEPEMCGNGIRCFARYIYD-QGYVSKNPLQVETLAGILTLQLSITGDQVTG 126
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V+VDMGEPILK+ VP + + VV + LDVDG ++ T VSMGNPHCV F
Sbjct: 127 VRVDMGEPILKSEQVPVLIQGD---PVVGARLDVDGQEFEFTAVSMGNPHCVLFVED--- 180
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
+ L+ IGP E H +FP +TN EF+ + SP +L M+VWERGAG TLACGTGACA
Sbjct: 181 ---YETLDFERIGPAIEKHPLFPRKTNVEFIIVNSPRELTMKVWERGAGPTLACGTGACA 237
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VVAAVL G ER+ TV LPGG L IEW EDN VYMTGPA VF G +L
Sbjct: 238 SVVAAVLNGRTERKVTVHLPGGDLLIEWG-EDNRVYMTGPAAYVFKGVLL 286
>gi|219669923|ref|YP_002460358.1| diaminopimelate epimerase [Desulfitobacterium hafniense DCB-2]
gi|254767101|sp|B8FSD4.1|DAPF_DESHD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|219540183|gb|ACL21922.1| Diaminopimelate epimerase [Desulfitobacterium hafniense DCB-2]
Length = 283
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 148/290 (51%), Positives = 183/290 (63%), Gaps = 18/290 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI--TPEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ VK HGLGNDF+ +D+ + PE A KLC R FG+G DG+I +P + D
Sbjct: 1 MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIMVLPS-DKADA 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
MRI NSDGSEPEMCGNG+RCFAR+I + + + V T AG++ ++ G
Sbjct: 60 RMRILNSDGSEPEMCGNGIRCFARYIYD-QGYVSQNPLQVETLAGILTLQLSITGDQVTG 118
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V+VDMGEPILK+ VP + + VV + LDVDG ++ T VSMGNPHCV F
Sbjct: 119 VRVDMGEPILKSEQVPVLIQGD---PVVGARLDVDGQEFEFTAVSMGNPHCVLFVED--- 172
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
+ L+ IGP E H +FP +TN EF+ + SP +L M+VWERGAG TLACGTGACA
Sbjct: 173 ---YETLDFERIGPAIEKHPLFPRKTNVEFIIVNSPRELTMKVWERGAGPTLACGTGACA 229
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VVAAVL G ER+ TV LPGG L IEW EDN VYMTGPA VF G +L
Sbjct: 230 SVVAAVLNGRTERKVTVHLPGGDLLIEWG-EDNRVYMTGPAAYVFKGVLL 278
>gi|255658378|ref|ZP_05403787.1| diaminopimelate epimerase [Mitsuokella multacida DSM 20544]
gi|260849709|gb|EEX69716.1| diaminopimelate epimerase [Mitsuokella multacida DSM 20544]
Length = 278
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 140/288 (48%), Positives = 188/288 (65%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K+ G GNDF+LVD A K+CDR++GIG DGV++ +P + D+ M
Sbjct: 1 MRFSKWQGCGNDFVLVDCFKENVSDFAA-FAKKVCDRHYGIGGDGVLYVLPS-DKADFRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV---K 194
RIFN+DGSE EMCGNG+RCFAR++ + L K+ FTV TGAG++VP +Q + GKV +
Sbjct: 59 RIFNTDGSEAEMCGNGIRCFARYLHDF-GLTEKEEFTVETGAGILVPRLQIEAGKVTGVR 117
Query: 195 VDMGEPILKASDVP-TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMGEP+L+ +P T N+ V++ +++V G + +TCVSMGNPHCV F
Sbjct: 118 VDMGEPVLEGEKIPVTGFGMNR---VIEEDIEVKGKTYKMTCVSMGNPHCVIFVED---- 170
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ + E+G FE H FP +TNTEFVE+ ++MRVWERGA TLACGTG+CA
Sbjct: 171 --AEAFPIYELGASFESHPAFPRKTNTEFVEVRDRQHVRMRVWERGAAVTLACGTGSCAT 228
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA VL G +R+ V+L GG L +EW E NHV+MTGPAE+VF G +
Sbjct: 229 GVAGVLTGRTDRKVEVELDGGKLTVEWDEATNHVFMTGPAELVFTGEI 276
>gi|258515536|ref|YP_003191758.1| diaminopimelate epimerase [Desulfotomaculum acetoxidans DSM 771]
gi|257779241|gb|ACV63135.1| diaminopimelate epimerase [Desulfotomaculum acetoxidans DSM 771]
Length = 277
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 149/289 (51%), Positives = 193/289 (66%), Gaps = 16/289 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+HFVK HGLGNDF++V+ T P PE A ++C R FGIGADG++ + + D M
Sbjct: 1 MHFVKVHGLGNDFVVVNAMTETLPADLPELARRVCHRYFGIGADGLVL-LHKSDAADLRM 59
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE-IQDDGKVK--- 194
+I NSDGSEPEMCGN +RC A++ E +NL K V T AG+ +PE I ++G VK
Sbjct: 60 QIINSDGSEPEMCGNAIRCVAKYAYE-QNLVKKTKIQVETLAGIKIPELILENGAVKFIR 118
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMGEPIL+ +++P SA + V+ +L+V + VT VSMGNPHC+ F E +
Sbjct: 119 VDMGEPILERAEIPMRGSAGR---VLAEDLNVGNETFKVTAVSMGNPHCLIF-VDEAVSF 174
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V + IGP+ E H VFP +TN EF+E+++ ++KM+VWERGAG T+ACGTGACA V
Sbjct: 175 PV-----SLIGPQIEIHEVFPRKTNVEFIEVLNRREVKMKVWERGAGETMACGTGACATV 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAAVL G ER+ TV L GG L IEW ++NHVYMTGPAE VF GS L
Sbjct: 230 VAAVLNGLTERQVTVHLTGGDLLIEWA-DNNHVYMTGPAEEVFAGSYKL 277
>gi|87302691|ref|ZP_01085502.1| diaminopimelate epimerase [Synechococcus sp. WH 5701]
gi|87282574|gb|EAQ74532.1| diaminopimelate epimerase [Synechococcus sp. WH 5701]
Length = 388
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 140/285 (49%), Positives = 181/285 (63%), Gaps = 11/285 (3%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPR----ITPEQAAKLCDRNFGIGADGVIFAMPGVNGT 134
L F KY GLGNDF+L+D R + +P+ + PE+ +CDR FG+GADGVI A+P
Sbjct: 9 LAFSKYQGLGNDFLLLDGREAADPQELFGLDPERVRWICDRRFGVGADGVILALPPEGDG 68
Query: 135 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVK 194
+ MRIFN+DGSE EMCGNG+RC ARF+A+ + +++ V T AG +VPE+ DG V+
Sbjct: 69 ELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDPAGRTWQVETMAGRMVPELLADGMVR 128
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMGEP L VPT+L A + + EL+V+G ++ MGNPH V
Sbjct: 129 VDMGEPFLLPEQVPTTL-ATGPAGLPQGELEVEGARFAAAAAGMGNPHLVI------PVE 181
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+V+ ++L GP E H FPARTN FV+ + P L MRVWERGAG TLACGTGACA +
Sbjct: 182 EVEVVDLERFGPLLERHPAFPARTNVHFVQALRPDHLVMRVWERGAGPTLACGTGACATL 241
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VA G + R +DLPGG L I+W NH++MTGPAE VF G
Sbjct: 242 VACHRLGLSARSARLDLPGGSLWIDWDSRSNHLFMTGPAEPVFDG 286
>gi|449533349|ref|XP_004173638.1| PREDICTED: diaminopimelate epimerase, chloroplastic-like, partial
[Cucumis sativus]
Length = 172
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 139/172 (80%), Positives = 151/172 (87%)
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
VKVDMGEPILKA+DVPT L+ KDQSVVK+ ++VDGV W+VTCVSMGNPHCVTF K Q
Sbjct: 1 VKVDMGEPILKATDVPTRLTPTKDQSVVKAAIEVDGVAWSVTCVSMGNPHCVTFSNKIEQ 60
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
NL+VD +NLA IGPKFEHH +FPARTNTEFV+++S S LKMRVWERGAGATLACGTGACA
Sbjct: 61 NLQVDGINLAAIGPKFEHHEMFPARTNTEFVQVLSNSHLKMRVWERGAGATLACGTGACA 120
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VVVAAVLEG A R CTVDLPGGPL IEW EEDNHVYMTGPAEVVFYGSV L
Sbjct: 121 VVVAAVLEGRAGRNCTVDLPGGPLQIEWSEEDNHVYMTGPAEVVFYGSVPLQ 172
>gi|242083832|ref|XP_002442341.1| hypothetical protein SORBIDRAFT_08g018560 [Sorghum bicolor]
gi|241943034|gb|EES16179.1| hypothetical protein SORBIDRAFT_08g018560 [Sorghum bicolor]
Length = 425
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 139/217 (64%), Positives = 166/217 (76%), Gaps = 12/217 (5%)
Query: 48 SFRVSASSMSSIHAPESASRT------SFLDRRESG-FLHFVKYHGLGNDFILVDNRNST 100
SF S ++H SA R+ SF++RRES LHFVKY GLGNDFILVDNR+S
Sbjct: 51 SFLERRESERALHYQVSAPRSGAAAAASFVERRESERALHFVKYQGLGNDFILVDNRDSW 110
Query: 101 EPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFAR 160
P++TPE+A KLCDRNFGIGADGVIF MPGVNG DY ++IFNSDGSEPEMCGNGVRCFAR
Sbjct: 111 VPKVTPEEAVKLCDRNFGIGADGVIFVMPGVNGADYNIKIFNSDGSEPEMCGNGVRCFAR 170
Query: 161 FIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVV 220
FIAE+ENL G SFT+HTGAG I+PE+Q DG+VKVDM E I D+PT L A K+++VV
Sbjct: 171 FIAEIENLQGTNSFTIHTGAGKIIPEMQSDGQVKVDMDEHIPSGPDIPTKLLATKNKAVV 230
Query: 221 KSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
+++L V+G+ W+VTCVSMG VTFG KE +KVD
Sbjct: 231 QAKLVVEGLPWHVTCVSMG----VTFGAKE-VKVKVD 262
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/132 (56%), Positives = 88/132 (66%), Gaps = 13/132 (9%)
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
KVKVDMGEPIL +PT L A K+++ V++EL V+G+ W+VTCVSMGNPHCVTFG KE
Sbjct: 258 KVKVDMGEPILSGPGIPTKLLATKNKAAVQAELAVEGLTWHVTCVSMGNPHCVTFGAKE- 316
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
LKVD L ++IGPKFE H +FPARTNTE V+ S S L MRV CG GA
Sbjct: 317 --LKVDDLKFSKIGPKFERHEMFPARTNTESVQDSSCSHLNMRV----------CGHGAV 364
Query: 312 AVVVAAVLEGHA 323
+ A EG A
Sbjct: 365 SPWARAWAEGQA 376
>gi|406982869|gb|EKE04136.1| hypothetical protein ACD_20C00104G0030 [uncultured bacterium]
Length = 287
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 143/291 (49%), Positives = 193/291 (66%), Gaps = 16/291 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-AAKLCDRNFGIGADGVIFAMP-GVNG-TD 135
+ F K HGLGNDF+LVD + IT E+ A K+CDRNFG+GADG+I P V TD
Sbjct: 5 VKFTKMHGLGNDFVLVDGYEFEKHNITYEELAKKICDRNFGVGADGLIIVNPIDVKADTD 64
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
T RIFNSDGSEP+MCGNG+RCFA+++ E + + K+ FT+ T AG+I PEI + G+++V
Sbjct: 65 TTWRIFNSDGSEPQMCGNGIRCFAKYVYE-KGIVSKKKFTISTLAGIITPEILNSGEIRV 123
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
DMG P+ +AS +PTS+ + ++ + V ++N+ VSMGNPHC+ F T E
Sbjct: 124 DMGSPVFEASKIPTSI--DHLDCIIDYPIQVAEKEFNINAVSMGNPHCIIF-TDE----- 175
Query: 256 VDKLNLA-EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
D + LA E GP E H +FP +TN EFV+I+S +++ VWERG G TLACGTGACA V
Sbjct: 176 -DTIKLAKEYGPAIEVHELFPEKTNVEFVKILSRDNVRINVWERGCGITLACGTGACASV 234
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKE--EDNHVYMTGPAEVVFYGSVLL 363
VAA++ + +LPGG L IEW + E N V+M+G +E VF+G LL
Sbjct: 235 VAAIVNNFVDNLVVAELPGGNLKIEWNQGKEGNRVFMSGRSEFVFHGEYLL 285
>gi|260424657|ref|ZP_05732845.2| diaminopimelate epimerase [Dialister invisus DSM 15470]
gi|260402725|gb|EEW96272.1| diaminopimelate epimerase [Dialister invisus DSM 15470]
Length = 283
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 140/294 (47%), Positives = 190/294 (64%), Gaps = 12/294 (4%)
Query: 71 LDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPG 130
++ + GF+HF K+ GNDF+ V N + + R ++ +C+RNFGIGADG+IF +P
Sbjct: 1 MNDMQEGFMHFTKWQACGNDFVFV-NAMTMDIRPVVKKCVSICNRNFGIGADGIIFVLPS 59
Query: 131 VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDD 190
T MRIFNSDGSE EMCGNG+R FA++ EL L K F+V TGAG++ PE+ D
Sbjct: 60 EKAT-LQMRIFNSDGSEAEMCGNGIRAFAKWAHEL-GLVSKHHFSVETGAGILFPELLPD 117
Query: 191 GKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKE 250
GKV+VDMG P L +S++P ++ D VV +L D + +TCVSMGNPHCV F
Sbjct: 118 GKVRVDMGVPHLNSSEIP--VTGFGDGMVVNRKLTNDLHTYRITCVSMGNPHCVIFTDD- 174
Query: 251 GQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
+D+++L EIG + E + FP +TN EF +++ + L+MRVWERG G T+ACGTG
Sbjct: 175 -----IDRISLEEIGSRLEADAHFPRKTNVEFAQLLKKNLLRMRVWERGTGVTMACGTGT 229
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDN-HVYMTGPAEVVFYGSVLL 363
CA VVAA+L G E V L GG L I W+ + + HV+MTGPAE VF G ++
Sbjct: 230 CATVVAAILNGLVEGEAEVILDGGNLHISWEGDSSAHVFMTGPAEKVFEGEYII 283
>gi|329120939|ref|ZP_08249570.1| diaminopimelate epimerase [Dialister micraerophilus DSM 19965]
gi|327471101|gb|EGF16555.1| diaminopimelate epimerase [Dialister micraerophilus DSM 19965]
Length = 290
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/287 (48%), Positives = 187/287 (65%), Gaps = 14/287 (4%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
++F K+ GNDFI+ N + + E KLC+RNFGIGADG+I+ +P ++ D+
Sbjct: 4 LMYFSKWQACGNDFIIF-NSFKNKFIFSSEFVKKLCNRNFGIGADGIIYVLPSLDA-DFK 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
MRIFNSDGSE EMCGNG+RCFA+F+ + +N K SF+V TGAG++ PEI +G V VDM
Sbjct: 62 MRIFNSDGSEAEMCGNGIRCFAKFVVNQKLIN-KSSFSVETGAGILFPEILKNGNVCVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDV--DGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
G P L + D+P + K V+ L++ + + + CVSMGNPHCV F K
Sbjct: 121 GIPNLNSDDIPVKGFSKK--VVIDELLNISHENTAYRINCVSMGNPHCVIFTDK------ 172
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+D +N+ G E+H FP +TN EFV+ IS S L+M+VWERGAG TLACGTG+CA VV
Sbjct: 173 IDSINIEADGSIIENHKQFPKKTNVEFVQKISDSILRMKVWERGAGITLACGTGSCAAVV 232
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEW-KEEDNHVYMTGPAEVVFYGSV 361
AA L + V L GG L+I W K++ NHV+MTGPAE VF G++
Sbjct: 233 AATLNNLVNNKADVILDGGKLNIFWDKDKTNHVFMTGPAEKVFDGNI 279
>gi|167630192|ref|YP_001680691.1| diaminopimelate epimerase [Heliobacterium modesticaldum Ice1]
gi|229807510|sp|B0TGR9.1|DAPF_HELMI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|167592932|gb|ABZ84680.1| diaminopimelate epimerase [Heliobacterium modesticaldum Ice1]
Length = 281
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 145/295 (49%), Positives = 186/295 (63%), Gaps = 24/295 (8%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT-----PEQAAKLCDRNFGIGADGVIFAMPGVNG 133
+ FVK HGLGNDFI+V N+ EP + E A ++CDR++GIG DG+I P +
Sbjct: 1 MEFVKMHGLGNDFIVV---NAMEPPLLDREDWEEIAVRICDRHYGIGGDGLILLFPS-DK 56
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK- 192
D RI NSDGSEPEMCGNG+RC AR++ E + K+ V T AG+IVPEI D
Sbjct: 57 ADIRWRILNSDGSEPEMCGNGIRCLARYVYE-RGIVAKRRIEVETLAGIIVPEIITDAAG 115
Query: 193 ----VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGT 248
V VDMGEP L+ +P + V EL V VT +SMGNPHC+ +
Sbjct: 116 AVTGVCVDMGEPRLQRHQIPM---VGPEGPAVNQELVVGDAVVRVTALSMGNPHCLIYVN 172
Query: 249 KEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
+D+ + +GPK E H FPA+TN EFV++++P +++MRVWERGAG TLACGT
Sbjct: 173 D------IDEAPVTTLGPKVEVHPAFPAKTNVEFVQVVAPDEVQMRVWERGAGPTLACGT 226
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
GACA VV +VL G+ +R+ TV L GGPL IEW+EE+N VYMTGPA VF G + L
Sbjct: 227 GACATVVGSVLNGYTDRKVTVHLAGGPLHIEWREENNRVYMTGPAVEVFRGELPL 281
>gi|452825286|gb|EME32284.1| diaminopimelate epimerase [Galdieria sulphuraria]
Length = 360
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/350 (42%), Positives = 206/350 (58%), Gaps = 30/350 (8%)
Query: 22 INPLRSSSLSYSLTRPFGSN-----LTLKVPSFRVSASSMSSIHAPESASRTSFLDRRES 76
+N R +S Y + FG L+L VP + ++H + F
Sbjct: 31 VNVRRKNSQHYRIRAYFGRRANTFYLSLPVPE-------LGTLHPKREMELSPF------ 77
Query: 77 GFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNG-TD 135
F KY GLGNDFI+VDNR+ + P + EQ +C+R FGIGADGVIF +P + D
Sbjct: 78 ---PFFKYQGLGNDFIIVDNRHKSHPTLATEQVKFVCERRFGIGADGVIFLLPPKDDRND 134
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELEN-LNGKQSFTVHTGAGLIVPEIQDDGKVK 194
MRI NSDGSEPEMCGNG+RC A+++ ++ + K + T +G+++ E +K
Sbjct: 135 AQMRILNSDGSEPEMCGNGIRCLAKYMRDISSEWRSKHILRIETLSGIMLVEFVGKNGIK 194
Query: 195 VDMGEPILKASDVPTSLS--ANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
VDMG+PIL S VPT+L ++++ +V+ + ++G + VTCVSMGNPHC+
Sbjct: 195 VDMGKPILDPSIVPTTLKPKSSEETAVIDVPIQIEGRTFRVTCVSMGNPHCIILV----D 250
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
NL+ + L GP+ E+ FP RTN EF++++ +Q+K+ VWERG G TLACGTGACA
Sbjct: 251 NLEEVEKTLDYWGPRVENSPWFPKRTNVEFIKVVDQNQIKVIVWERGVGRTLACGTGACA 310
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VVA L G A + V LPGG L W + D+HVYMTGPAE VF G +
Sbjct: 311 SVVAVKLLGFAVKEQEVVLPGGKLHCHW-DSDDHVYMTGPAEKVFEGHFM 359
>gi|313891958|ref|ZP_07825559.1| diaminopimelate epimerase [Dialister microaerophilus UPII 345-E]
gi|313119601|gb|EFR42792.1| diaminopimelate epimerase [Dialister microaerophilus UPII 345-E]
Length = 286
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 140/286 (48%), Positives = 188/286 (65%), Gaps = 14/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
++F K+ GNDFI+ N + + E KLC+RNFGIGADGVI+ +P ++ D+ M
Sbjct: 1 MYFSKWQACGNDFIIF-NSFKNKFIFSSEFVKKLCNRNFGIGADGVIYVLPSLD-ADFKM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RIFNSDGSE EMCGNG+RCFA+F+ + +N K SF+V TGAG++ PEI +G V VDMG
Sbjct: 59 RIFNSDGSEAEMCGNGIRCFAKFVVNQKLIN-KSSFSVETGAGILFPEILKNGNVCVDMG 117
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDV--DGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
P L + D+P + K ++ L++ + + + CVSMGNPHCV F K +
Sbjct: 118 IPNLNSDDIPVKGFSKK--VIIDELLNISHENKAYRINCVSMGNPHCVIFTDK------I 169
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
D +N+ G E+H FP +TN EFV+ IS S L+M+VWERGAG TLACGTG+CA VVA
Sbjct: 170 DGINIEADGSIIENHKQFPKKTNVEFVQKISDSILRMKVWERGAGITLACGTGSCAAVVA 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEW-KEEDNHVYMTGPAEVVFYGSV 361
A+L + V L GG L+I W K++ NHV+MTGPAE VF G++
Sbjct: 230 AILNNLVNNKADVILDGGKLNIFWDKDKTNHVFMTGPAEKVFDGNI 275
>gi|150402091|ref|YP_001329385.1| diaminopimelate epimerase [Methanococcus maripaludis C7]
gi|254767113|sp|A6VFK8.1|DAPF_METM7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|150033121|gb|ABR65234.1| Diaminopimelate epimerase [Methanococcus maripaludis C7]
Length = 277
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 142/289 (49%), Positives = 188/289 (65%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAAKLC-DRNFGIGADGVIFAMPGVNGTDY 136
+ F K HGLGND+I VD +T +I P + ++ DR+FGIG+DG++ +P D+
Sbjct: 1 MKFTKMHGLGNDYIYVD---ATSQKIENPNEISRFVSDRHFGIGSDGLVLILPS-EIADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE--IQDDG--K 192
MR+FNSDGSE EMCGN +RC +F+ + + + K + T+ T AG+ V E +++D
Sbjct: 57 KMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTITIETLAGIKVLEMTVENDKVVL 115
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
VKVDMGEPILKA +P ++ V+ E+ +N TCVSMGNPH +T+
Sbjct: 116 VKVDMGEPILKAETIPV---LSEKHPVIDEEITAKDYCYNFTCVSMGNPHAITYIEN--- 169
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V + L +IGP FE H FP +TN EFVE+I S +KMRVWERGAG TLACGTGACA
Sbjct: 170 ---VSEFPLEKIGPLFEFHEKFPRKTNVEFVELIDDSTIKMRVWERGAGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V+VA+VL+G+ R+ TV L GG L IEW E DNH+YMTGPA VF G +
Sbjct: 227 VLVASVLKGYVGRKATVKLLGGDLTIEWNESDNHIYMTGPATTVFEGEI 275
>gi|352093932|ref|ZP_08955103.1| Diaminopimelate epimerase [Synechococcus sp. WH 8016]
gi|351680272|gb|EHA63404.1| Diaminopimelate epimerase [Synechococcus sp. WH 8016]
Length = 383
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 136/288 (47%), Positives = 182/288 (63%), Gaps = 15/288 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNR------NSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGV 131
L F KY GLGNDF+L++ R N TEP P +LCDR FGIG DG+I A+P
Sbjct: 1 MLQFSKYQGLGNDFVLLEGRAGQLPLNITEP--DPHWVRQLCDRRFGIGGDGLILALPPQ 58
Query: 132 NGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG 191
+G + MRIFN+DGSE EMCGNG+RC ARF+A+ + +++ T AG+IVPE+ +DG
Sbjct: 59 HGEELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDQPGRTWRTETMAGVIVPELCEDG 118
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
+++VDMG+P L +PT+L+ + + E+D+ G + V MGNPH V ++
Sbjct: 119 QIRVDMGQPFLDPGAIPTTLTTGP-SGLPQGEIDLQGSSLQLAAVGMGNPH-VVVPVQDL 176
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
Q + D G E H +FPA+TN F+E+I L++RVWERGAG TLACGTGAC
Sbjct: 177 QTIPFDAW-----GSALEVHPLFPAKTNVHFLEVIDQHTLEIRVWERGAGPTLACGTGAC 231
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
A +VAA L G + + TV LPGGPL+I W + V+MTGPA VF G
Sbjct: 232 ATLVAATLLGLSNSKATVKLPGGPLEISWPDPQGSVFMTGPAVAVFDG 279
>gi|260888468|ref|ZP_05899731.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185]
gi|330838220|ref|YP_004412800.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185]
gi|260862004|gb|EEX76504.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185]
gi|329745984|gb|AEB99340.1| diaminopimelate epimerase [Selenomonas sputigena ATCC 35185]
Length = 279
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 138/284 (48%), Positives = 185/284 (65%), Gaps = 17/284 (5%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F K+ G GNDF+LV+ P + ++CDR++GIGADG+I +P D+ MRI
Sbjct: 5 FTKWQGCGNDFVLVNGFREQLPDDLAALSRRVCDRHYGIGADGLILVLPSQQ-ADFRMRI 63
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK----VKVD 196
FN+DG+E EMCGNG+RCFA + E L+G+ FTV TGAG++VP +Q G V+VD
Sbjct: 64 FNADGTEAEMCGNGIRCFAG-VVHAEGLSGEAEFTVETGAGILVPRLQLAGSRLTGVRVD 122
Query: 197 MGEPILKASDVPT-SLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
MGEPIL+ +P A++ V++ ++ +G +++TCVSMGNPHCV F ++ Q++
Sbjct: 123 MGEPILEGERIPVLGFGASR---VIEQPIEAEGETFSMTCVSMGNPHCVIF-VEDAQDVP 178
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
++K GP E H FP +TN EF EI S ++MRVWERGA TLACGTG+CA +V
Sbjct: 179 MEKF-----GPLLERHEKFPKKTNVEFAEIKDASHIRMRVWERGAAVTLACGTGSCATLV 233
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
AA L G +R V L GG L IEW E++HVYMTGPAE VF G
Sbjct: 234 AAALTGRTKREAEVQLDGGRLQIEWA-ENHHVYMTGPAEKVFAG 276
>gi|449523363|ref|XP_004168693.1| PREDICTED: diaminopimelate epimerase, chloroplastic-like, partial
[Cucumis sativus]
Length = 201
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 140/206 (67%), Positives = 154/206 (74%), Gaps = 20/206 (9%)
Query: 1 MAITTTRSLSVTPVTRRSATPINPLRSSSLSYSLTRPFGSNLTL----------KVPSFR 50
MA+ T SL +T + RS I LR S F S+L L + P
Sbjct: 1 MAVATIISLPLTSPSSRSLASIPSLRLS---------FTSSLQLDSLPKYSARGRSPRLS 51
Query: 51 VSASSMSSIHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAA 110
VSA+S + + E A SFLDRRESG LHFVKYHGLGNDFILVDNR+S+EPRITPEQAA
Sbjct: 52 VSATS-AGLEVTEKAPSFSFLDRRESGLLHFVKYHGLGNDFILVDNRDSSEPRITPEQAA 110
Query: 111 KLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNG 170
KLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENL G
Sbjct: 111 KLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQG 170
Query: 171 KQSFTVHTGAGLIVPEIQDDGKVKVD 196
+ SFTVHTGAGLI+PE+QDDG+V D
Sbjct: 171 RHSFTVHTGAGLIIPELQDDGQVYFD 196
>gi|340624216|ref|YP_004742669.1| diaminopimelate epimerase [Methanococcus maripaludis X1]
gi|339904484|gb|AEK19926.1| diaminopimelate epimerase [Methanococcus maripaludis X1]
Length = 277
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 140/289 (48%), Positives = 187/289 (64%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAAKLC-DRNFGIGADGVIFAMPGVNGTDY 136
+ F K HGLGND+I VD + +I P + +K DR+FGIG+DG++ +P + D+
Sbjct: 1 MKFTKMHGLGNDYIYVD---AISQKIENPNEISKFVSDRHFGIGSDGLVLILPS-DKADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
MR+FNSDGSE EMCGN +RC +F+ + + + K + T+ T AG+ V E+ +
Sbjct: 57 KMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTITIETLAGIKVLEMTIENSKVVL 115
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
VKVDMGEPILKA ++P ++ V+ E+ +N TCVSMGNPH +T+
Sbjct: 116 VKVDMGEPILKAEEIPV---LSEKYPVIDEEITAKDYCYNFTCVSMGNPHAITYIEN--- 169
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD+ L +IGP FE H FP +TN EFVE+I + +KMRVWERGAG TLACGTGACA
Sbjct: 170 ---VDEFPLEKIGPLFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V+ A+VL+G+ R+ TV L GG L IEW E DNH+YMTGPA VF G +
Sbjct: 227 VLTASVLKGYVGRKATVKLLGGDLTIEWNEFDNHIYMTGPATAVFEGEI 275
>gi|134045763|ref|YP_001097249.1| diaminopimelate epimerase [Methanococcus maripaludis C5]
gi|254767111|sp|A4FXV0.1|DAPF_METM5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|132663388|gb|ABO35034.1| diaminopimelate epimerase [Methanococcus maripaludis C5]
Length = 277
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 141/289 (48%), Positives = 190/289 (65%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAAKLC-DRNFGIGADGVIFAMPGVNGTDY 136
+ F K HGLGND+I VD + +I P + +K DR+FGIG+DG++ +P + D+
Sbjct: 1 MKFTKMHGLGNDYIYVD---AISQKIENPNEISKFVSDRHFGIGSDGLVLILPS-DVADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FNSDGSE EMCGN +RC +F+ + + + K + ++ T AG+ V E+ ++GKV
Sbjct: 57 KMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTISIETLAGIKVLEMTVENGKVVL 115
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
KVDMGEPILKA +P ++ V+ E+ +N TCVSMGNPH +T+
Sbjct: 116 VKVDMGEPILKAETIPV---LSEKHPVIDEEITAKDYCYNFTCVSMGNPHAITYIEN--- 169
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V++ L +IGP FE H FP +TN EFVE+I S +KMRVWERGAG TLACGTGACA
Sbjct: 170 ---VEEFPLEKIGPLFEVHEKFPKKTNVEFVELIDDSTVKMRVWERGAGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V+ A+VL+G+ R+ TV L GG L IEW E+DNH+YMTGPA VF G +
Sbjct: 227 VLTASVLKGYVGRKATVKLLGGDLIIEWNEKDNHIYMTGPATTVFEGEI 275
>gi|45358480|ref|NP_988037.1| diaminopimelate epimerase [Methanococcus maripaludis S2]
gi|74554659|sp|Q6LYS1.1|DAPF_METMP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|44921238|emb|CAF30473.1| Diaminopimelate epimerase [Methanococcus maripaludis S2]
Length = 277
Score = 270 bits (689), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 141/289 (48%), Positives = 189/289 (65%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAAKLC-DRNFGIGADGVIFAMPGVNGTDY 136
+ F K HGLGND+I VD + +I P + +K DR+FGIG+DG++ +P + D+
Sbjct: 1 MKFTKMHGLGNDYIYVD---AISQKIENPNEISKFVSDRHFGIGSDGLVLILPS-DVADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FNSDGSE EMCGN +RC +F+ + + + K + T+ T AG+ V E+ ++GKV
Sbjct: 57 KMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTITIETLAGIKVLEMTIENGKVVL 115
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
KVDMGEPILKA ++P ++ V+ E+ +N TCVSMGNPH +T+
Sbjct: 116 VKVDMGEPILKAEEIPV---LSEKHPVIDEEITAKDYCYNFTCVSMGNPHAITYIEN--- 169
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD+ L +IGP FE H FP +TN EFVE+I + +KMRVWERGAG TLACGTGACA
Sbjct: 170 ---VDEFPLEKIGPLFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V+ A+VL+G+ R+ TV L GG L IEW E D H+YMTGPA VF G +
Sbjct: 227 VLTASVLKGYVGRKATVKLLGGDLTIEWNEFDKHIYMTGPATTVFEGEI 275
>gi|392394827|ref|YP_006431429.1| diaminopimelate epimerase [Desulfitobacterium dehalogenans ATCC
51507]
gi|390525905|gb|AFM01636.1| diaminopimelate epimerase [Desulfitobacterium dehalogenans ATCC
51507]
Length = 283
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 146/290 (50%), Positives = 182/290 (62%), Gaps = 18/290 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNST--EPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ VK HGLGNDF+ +D+ S E PE + KLC R FG+G DG+I +P D
Sbjct: 1 MEIVKMHGLGNDFVFIDHFVSAPAETLDYPELSRKLCHRQFGVGGDGLIVVLPS-EKADA 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
MRIFNSDGSEPEMCGNG+RCFAR+I + ++ K V T AG++ + +G
Sbjct: 60 RMRIFNSDGSEPEMCGNGIRCFARYIYDQGHVT-KNPLQVETLAGILTLHLTVEGDKVTG 118
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V+VDMGEPILK VP + +SVV ++L +DG ++ T VSMGNPHCV F
Sbjct: 119 VRVDMGEPILKPEQVPVLILG---ESVVGAKLSMDGQEFEFTAVSMGNPHCVIFVED--- 172
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
+ L+ +GP E H +FP +TN EF+ + S +L M+VWERG+G TLACGTGACA
Sbjct: 173 ---YETLDFERMGPAIEKHPLFPRKTNVEFIIVNSTKELTMKVWERGSGPTLACGTGACA 229
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VAAVL G ER TV LPGG L IEW EDN VYMTGPA VF G +L
Sbjct: 230 SAVAAVLNGKTERSVTVHLPGGDLQIEWG-EDNRVYMTGPAAYVFKGVLL 278
>gi|159906120|ref|YP_001549782.1| diaminopimelate epimerase [Methanococcus maripaludis C6]
gi|254767112|sp|A9AB27.1|DAPF_METM6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|159887613|gb|ABX02550.1| Diaminopimelate epimerase [Methanococcus maripaludis C6]
Length = 277
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 141/289 (48%), Positives = 189/289 (65%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAAKLC-DRNFGIGADGVIFAMPGVNGTDY 136
+ F K HGLGND+I VD + +I P + ++ DR+FGIG+DG++ +P + D+
Sbjct: 1 MKFTKMHGLGNDYIYVD---AISQKIENPNEISRFVSDRHFGIGSDGLVLILPS-DLADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE--IQDDG--K 192
MR+FNSDGSE EMCGN +RC +F+ + + + K + T+ T AG+ V E I++D
Sbjct: 57 KMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTITIETLAGIKVLEMTIENDKVVL 115
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
VKVDMGEPILKA +P ++ V+ E+ +N TCVS+GNPH +T+
Sbjct: 116 VKVDMGEPILKAETIPV---LSEKHPVIDEEITAKDYCYNFTCVSIGNPHAITYIEN--- 169
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V++ L +IGP FE H FP +TN EFVE+I S +KMRVWERGAG TLACGTGACA
Sbjct: 170 ---VEEFPLEKIGPLFEIHEKFPRKTNVEFVELIDDSTVKMRVWERGAGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V+VA+VL+G+ R+ TV L GG L IEW E DNH+YMTGPA VF G +
Sbjct: 227 VLVASVLKGYVGRKATVKLLGGDLTIEWNESDNHIYMTGPATTVFEGEI 275
>gi|354582469|ref|ZP_09001371.1| diaminopimelate epimerase [Paenibacillus lactis 154]
gi|353199868|gb|EHB65330.1| diaminopimelate epimerase [Paenibacillus lactis 154]
Length = 278
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 184/293 (62%), Gaps = 23/293 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HGLGNDF++V P E A KLCDR FGIGADG+++ +P D+TM
Sbjct: 1 MEFTKMHGLGNDFVVVYGEQEL-PSNASELAVKLCDRFFGIGADGLVYILPSAKA-DFTM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT-GAGL----IVPEIQDDGKV 193
RI NSDGSE E CGN +RC A+++ + L + T+ T GAG+ + E + V
Sbjct: 59 RIMNSDGSEAEQCGNAIRCVAKYVYD-HGLIDRTEMTIETLGAGVQKLRLTVEAERVASV 117
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+VDMGEPIL VPT++ VV ++VDG ++ T VSMGNPHCV +
Sbjct: 118 RVDMGEPILDGLRVPTTVD---QHPVVNHPIEVDGREFRFTAVSMGNPHCVIY------- 167
Query: 254 LKVD---KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
VD +L GPK E H +FP +TN EF + S +Q+ MRVWERGAG TLACGTGA
Sbjct: 168 --VDDAVSFDLGTWGPKLEVHPLFPRKTNVEFATVNSRNQIDMRVWERGAGPTLACGTGA 225
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
CA +VA+VL G A+R T+ L GG L IEW E DNHVYMTGPAEVV+ G+V+L
Sbjct: 226 CATLVASVLNGAADRSATISLKGGDLFIEWDERDNHVYMTGPAEVVYTGTVVL 278
>gi|87124461|ref|ZP_01080310.1| diaminopimelate epimerase [Synechococcus sp. RS9917]
gi|86168033|gb|EAQ69291.1| diaminopimelate epimerase [Synechococcus sp. RS9917]
Length = 360
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 134/291 (46%), Positives = 181/291 (62%), Gaps = 15/291 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNST------EPRITPEQAAKLCDRNFGIGADGVIFAMPGV 131
L F KY GLGNDFIL++ R+ EP P +LCDR FGIGADG+I A+P
Sbjct: 1 MLQFSKYQGLGNDFILLEGRSGQLSAAICEP--DPAWVRRLCDRRFGIGADGLIVALPPA 58
Query: 132 NGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG 191
+ MRIFN+DGSE EMCGNG+RC ARF+A+ + +++ + T AGLI+P + DG
Sbjct: 59 AAGELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDASGRTWRIETAAGLIIPTLLADG 118
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
+++VDMG P L+ VPT+L + + E+++DG + + MGNPH V
Sbjct: 119 QIQVDMGRPFLQPEQVPTALPVGA-AGLPQGEVELDGRRLALAAAGMGNPHVVVTVD--- 174
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+D++ G E +FPA+TN F++++SPS+L++RVWERGAG TLACGTGAC
Sbjct: 175 ---DLDQIPFERWGAALEVDPLFPAKTNVHFLQVLSPSRLQIRVWERGAGPTLACGTGAC 231
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
A +VAA L G AE V LPGGPL I W + + MTGPAE VF G ++
Sbjct: 232 ATLVAAHLLGLAEATAEVLLPGGPLTISWPDRSGSILMTGPAEAVFDGVLV 282
>gi|435853709|ref|YP_007315028.1| diaminopimelate epimerase [Halobacteroides halobius DSM 5150]
gi|433670120|gb|AGB40935.1| diaminopimelate epimerase [Halobacteroides halobius DSM 5150]
Length = 280
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/287 (50%), Positives = 186/287 (64%), Gaps = 15/287 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPG-VNGTDYT 137
+ F K HGLGNDF+LV N E + A K+CDRNFG+GADG++ +P ++ D+
Sbjct: 1 MRFTKMHGLGNDFVLV-NCFKEEVEEPSKLATKICDRNFGVGADGLVLILPSQLDEADFR 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE-IQDDGKV--- 193
MRIFN DGSEPEMCGN +RCFAR++ E L K + V T AG+I P+ I ++ KV
Sbjct: 60 MRIFNPDGSEPEMCGNAIRCFARYLFE-RGLTDKLNINVETLAGIIKPQLIVNNDKVELV 118
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
KVDMGEP LK S +P + +DQ VV +E++V G + VTCVSMGNPHC+ F
Sbjct: 119 KVDMGEPRLKRSRIPM-VGEEQDQ-VVGAEINVAGQEVEVTCVSMGNPHCIIFVDD---- 172
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ K + E+GPK E H FP N EF+E+++ ++++MRVWERGAG TLACGTGACA
Sbjct: 173 --IKKAPVEELGPKVEVHDAFPEDINVEFIEVVNDTEIEMRVWERGAGVTLACGTGACAS 230
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
VA +L + TV L GG L IEW +NHVYM+GPA VF G
Sbjct: 231 TVACILNNLTANKLTVHLLGGDLVIEWDANNNHVYMSGPATEVFTGD 277
>gi|325111163|ref|YP_004272231.1| diaminopimelate epimerase [Planctomyces brasiliensis DSM 5305]
gi|324971431|gb|ADY62209.1| diaminopimelate epimerase [Planctomyces brasiliensis DSM 5305]
Length = 281
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 137/288 (47%), Positives = 192/288 (66%), Gaps = 21/288 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HG GND++ VD P PE A ++ DR+ IG+DG+I P + D M
Sbjct: 1 MKFTKMHGAGNDYVYVDLFREELPVDAPELARQVSDRHTAIGSDGLILIQPS-DKADARM 59
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-QDDGKVK--- 194
R+FN+DGSE EMCGNG+RC A+++ + ++ K+ T+ TGAGL+ ++ +DG+VK
Sbjct: 60 RMFNADGSEAEMCGNGLRCVAKYVYD-HDIARKEELTLETGAGLLTVQVFPEDGRVKQVR 118
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
V+MG+PIL+++ +PT+L+ + V+++L V VTCVSMGNPHC+TF
Sbjct: 119 VNMGQPILESAKIPTTLAGDPP---VEADLQVGDQTLKVTCVSMGNPHCITF-------- 167
Query: 255 KVDKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
VDKL+ + +GP+ E H+VFP R N EF+E+ISP++L MRVWERG+G T+ACGTGAC
Sbjct: 168 -VDKLSDEWVHGVGPQVEKHTVFPNRVNAEFIEVISPTELNMRVWERGSGETMACGTGAC 226
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
AV VA VL G ER+ T+ L GG L++EW EE V+MTGPA V+ G
Sbjct: 227 AVAVAGVLSGRCERKVTIHLLGGDLELEWSEETGEVFMTGPAVEVYSG 274
>gi|402835104|ref|ZP_10883687.1| diaminopimelate epimerase [Selenomonas sp. CM52]
gi|402276211|gb|EJU25329.1| diaminopimelate epimerase [Selenomonas sp. CM52]
Length = 279
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 138/284 (48%), Positives = 183/284 (64%), Gaps = 17/284 (5%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F K+ G GNDF+LV+ P + ++CDR++GIGADG+I +P D+ MRI
Sbjct: 5 FTKWQGCGNDFVLVNGFREQLPDDLAALSRRVCDRHYGIGADGLILVLPSQQ-ADFRMRI 63
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK----VKVD 196
FN+DG+E EMCGNG+RCFA + E L+G+ FTV TGAG++VP +Q G V VD
Sbjct: 64 FNADGTEAEMCGNGIRCFAG-VVHAEGLSGEAEFTVETGAGILVPRLQLAGSRLTGVCVD 122
Query: 197 MGEPILKASDVPT-SLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
MGEPIL+ +P A++ V++ ++ +G +++TCVSMGNPHCV F ++ Q++
Sbjct: 123 MGEPILEGERIPVRGFGASR---VIEQPIEAEGETFSMTCVSMGNPHCVIF-VEDAQDVP 178
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
++K GP E H FP +TN EF EI S ++MRVWERGA TLACGTG+CA +V
Sbjct: 179 MEKF-----GPLLERHEKFPKKTNVEFAEIKDASHIRMRVWERGAAVTLACGTGSCATLV 233
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
AA L G +R V L GG L IEW +NHVYMTGPAE VF G
Sbjct: 234 AAALTGRTKREAEVQLDGGRLQIEWA-ANNHVYMTGPAEKVFAG 276
>gi|302392607|ref|YP_003828427.1| diaminopimelate epimerase [Acetohalobium arabaticum DSM 5501]
gi|302204684|gb|ADL13362.1| diaminopimelate epimerase [Acetohalobium arabaticum DSM 5501]
Length = 279
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 141/288 (48%), Positives = 190/288 (65%), Gaps = 18/288 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAK-LCDRNFGIGADGVIFAMPGVNG-TDY 136
+ F K HGLGNDF++V+ N E P Q A+ +CDR+FG+GADG++ +P D+
Sbjct: 1 MEFTKMHGLGNDFVMVNGFN--EDIADPNQLAEAICDRHFGVGADGLVLILPSKQEEADF 58
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE--IQDDG--K 192
MRIFN DGSEPEMCGN +RCF +++ + +L K V T AG+IVPE I+ D
Sbjct: 59 RMRIFNPDGSEPEMCGNAIRCFGKYLYD-RDLTEKTKIRVETLAGIIVPELIIEKDQVEA 117
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V+VDMG+P L ++D+P + NKD+ V+K +L+V+ ++ +T VSMGNPH V F
Sbjct: 118 VQVDMGQPGLGSTDIPIT-GVNKDK-VIKEKLEVENEEYEITAVSMGNPHTVIFVDD--- 172
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
D + E+GPK E H FP +TN EF+E+++ S++KMRVWERGAG TLACGTGAC
Sbjct: 173 ---ADDFPVTEVGPKIEEHPRFPEKTNVEFIEVMNRSEIKMRVWERGAGVTLACGTGACG 229
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
VA++L + ++ V L GG L IEW ED+HVYMTGPAE VF G
Sbjct: 230 STVASILNDYTNQKVEVHLLGGDLTIEWT-EDSHVYMTGPAEEVFVGE 276
>gi|113954972|ref|YP_730575.1| diaminopimelate epimerase [Synechococcus sp. CC9311]
gi|113882323|gb|ABI47281.1| diaminopimelate epimerase [Synechococcus sp. CC9311]
Length = 380
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 138/288 (47%), Positives = 182/288 (63%), Gaps = 15/288 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNR------NSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGV 131
L F KY GLGNDF+L++ R N EP P +LCDR FGIG DG+I A+P
Sbjct: 1 MLQFSKYQGLGNDFVLLEGRAGQLPLNIAEP--DPNWVRQLCDRRFGIGGDGLILALPPE 58
Query: 132 NGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG 191
+G + MRIFN+DGSE EMCGNG+RC ARF+A+ + +++ T AG+IVPE+ +DG
Sbjct: 59 HGEELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDQPGRTWRTETMAGVIVPELCEDG 118
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
+++VDMG+P L + VPT+L + + + E+D+ G + V MGNPH V
Sbjct: 119 QIRVDMGKPFLNSDQVPTNLPQGR-SGLPQGEIDLQGSTLQLAAVGMGNPHVVV----PV 173
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
Q+LK + G E S+FPA+TN F+E+I L++RVWERGAG TLACGTGAC
Sbjct: 174 QDLK--SIPFDAWGSALEVDSLFPAKTNVHFLEVIDQHTLEIRVWERGAGPTLACGTGAC 231
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
A +VAA L G +E TV LPGGPL+I W + V+MTGPA VF G
Sbjct: 232 ATLVAASLLGLSESEATVKLPGGPLEISWPDPKGSVFMTGPAVSVFDG 279
>gi|88808555|ref|ZP_01124065.1| diaminopimelate epimerase [Synechococcus sp. WH 7805]
gi|88787543|gb|EAR18700.1| diaminopimelate epimerase [Synechococcus sp. WH 7805]
Length = 368
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 138/289 (47%), Positives = 184/289 (63%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPR-ITPEQA---AKLCDRNFGIGADGVIFAMPGVNG 133
L F KY GLGNDFILV+ R+ P IT A K+CDR FG+G DG+I A+P
Sbjct: 1 MLQFSKYQGLGNDFILVEGRDGRLPESITSPNADWVRKVCDRRFGLGGDGLILALPPQGQ 60
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKV 193
D MRIFN+DGSE EMCGNG+RC ARF+A+ + +S+ + T AG I+PE+Q DG++
Sbjct: 61 GDLRMRIFNADGSEAEMCGNGIRCLARFLADSDGDLPGRSWRIETPAGQIIPELQQDGQI 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+VDMG P LK VPT LS +++ + + E+ +G+ ++ V MGNPH V
Sbjct: 121 RVDMGAPFLKPEAVPTLLSPDEN-GLPRGEVTREGLTLSLAAVGMGNPHVV--------- 170
Query: 254 LKVDKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
+ VD L +G + E +FPA+TN F++++S L++RVWERGAG TLACGTGA
Sbjct: 171 VPVDDLETIPFEALGAQLECDPIFPAKTNVHFLKVLSRQHLEIRVWERGAGPTLACGTGA 230
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
CA +VAA L G ++ TV LPGGPL I W ++ V+MTGPA VF G
Sbjct: 231 CATLVAAFLLGLSDSEATVVLPGGPLSISWPDQQGSVFMTGPAVAVFDG 279
>gi|148239598|ref|YP_001224985.1| diaminopimelate epimerase [Synechococcus sp. WH 7803]
gi|147848137|emb|CAK23688.1| Diaminopimelate epimerase [Synechococcus sp. WH 7803]
Length = 368
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 135/289 (46%), Positives = 187/289 (64%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNS--TEPRITPEQ--AAKLCDRNFGIGADGVIFAMPGVNG 133
L F KY GLGNDFILV+ R+ +E ++P+ K+CDR FG+G DG+I A+P
Sbjct: 1 MLQFSKYQGLGNDFILVEGRDGRLSESIVSPDSDWVRKICDRRFGLGGDGLILALPPQGQ 60
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKV 193
+ MRIFN+DGSE EMCGNG+RC ARF+A+ + + +S+++ T AG+I+PE+Q DG++
Sbjct: 61 GELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDSPGRSWSIETPAGMIIPELQQDGQI 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+VDMG P LK VPT LS + + + + E+ +G+ ++ V MGNPH V
Sbjct: 121 RVDMGAPFLKPEMVPTLLSPDA-KGLPRGEVSREGLTLSLAAVGMGNPHVV--------- 170
Query: 254 LKVDKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
+ VD L +G + E +FPA+TN F+++ L++RVWERGAG TLACGTGA
Sbjct: 171 VPVDDLEAIPFEALGAQLECDPLFPAKTNVHFLKVHGRQHLEIRVWERGAGPTLACGTGA 230
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
CA +VAAVL G ++ TV LPGGPL I W ++ V+MTGPA VF G
Sbjct: 231 CATLVAAVLMGLSDSEATVVLPGGPLSIRWSDQQGSVFMTGPAVAVFDG 279
>gi|354558689|ref|ZP_08977943.1| Diaminopimelate epimerase [Desulfitobacterium metallireducens DSM
15288]
gi|353545751|gb|EHC15201.1| Diaminopimelate epimerase [Desulfitobacterium metallireducens DSM
15288]
Length = 287
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 187/293 (63%), Gaps = 21/293 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPR-----ITPEQAAKLCDRNFGIGADGVIFAMPGVNG 133
+ FVK HGLGNDF+ +D+ N PE A +LC R FG+G+DG+I +P
Sbjct: 1 MEFVKMHGLGNDFVFIDHFNKQPAEGESEGDYPELARRLCHRQFGVGSDGLIAVLPS-QV 59
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK- 192
D MRIFN DGSEPEMCGNG+RCFAR+I + + K + V T AG++ ++ +G+
Sbjct: 60 ADARMRIFNLDGSEPEMCGNGIRCFARYIFD-QGYIKKNTIQVETLAGILTLQLTLEGEK 118
Query: 193 ---VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTK 249
V+VDMGEPILK +P + + VV ++L+V+G ++ T VSMGNPHCV F
Sbjct: 119 VTGVRVDMGEPILKPGLIPV---LAQGEPVVGAKLEVEGQEFEYTAVSMGNPHCVIF-VD 174
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
+ +NL + L GP E H +FP +TN EF+ + S ++ M+VWERGAG TLACGTG
Sbjct: 175 DYKNLDFEHL-----GPAIEKHPLFPRKTNVEFIRVDSRGEITMKVWERGAGPTLACGTG 229
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
ACA VAA+L G ER+ TV LPGG L IEW EDN VYMTGPA VF G +L
Sbjct: 230 ACASTVAAILNGKIERKVTVHLPGGDLFIEWG-EDNRVYMTGPATYVFRGIIL 281
>gi|334340875|ref|YP_004545855.1| diaminopimelate epimerase [Desulfotomaculum ruminis DSM 2154]
gi|334092229|gb|AEG60569.1| diaminopimelate epimerase [Desulfotomaculum ruminis DSM 2154]
Length = 281
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 148/289 (51%), Positives = 187/289 (64%), Gaps = 21/289 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTE--PRITPEQAAKLCDRNFGIGADGVIFAM-PGVNGTD 135
+ F K HGLGNDFI+V N + E P A ++CDR FGIGADG++ + GV D
Sbjct: 1 MFFTKVHGLGNDFIVV-NAGTGEGFPDDYASLAVEMCDRKFGIGADGLVLLLDSGV--AD 57
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-QDDGKV- 193
MRI NSDGSE EMCGN +RC A+++ E N+ K+ V T AG+I P++ DGKV
Sbjct: 58 VRMRIINSDGSEAEMCGNAIRCVAKYLYE-HNIVRKEEIKVETLAGIIAPQVLHQDGKVQ 116
Query: 194 --KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
KVDMG P L+ +++P A + VV L+VDG + +T VSMGNPHC+ F
Sbjct: 117 AVKVDMGYPRLERTEIPMLGPAGQ---VVGENLEVDGENYRITTVSMGNPHCIIFVPD-- 171
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
V + L EIGP+ E H FP +TN EFV+++SP ++KM VWERGAG TLACGTGAC
Sbjct: 172 ----VAAVALTEIGPRIETHPAFPRKTNVEFVQMLSPREVKMIVWERGAGPTLACGTGAC 227
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
AV VA VL G ER+ TV LPGGPL+IEW E+ +YMTGPA VF+G
Sbjct: 228 AVAVAGVLNGLTERKVTVHLPGGPLEIEWA-ENGKLYMTGPATEVFHGE 275
>gi|388504352|gb|AFK40242.1| unknown [Medicago truncatula]
Length = 220
Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 135/166 (81%), Positives = 146/166 (87%)
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP+LKASDVPT LS NKD +VVKSE+DVDG WNVTCVSMGNPHCVTF K QNL VD
Sbjct: 55 GEPVLKASDVPTKLSPNKDHAVVKSEIDVDGSIWNVTCVSMGNPHCVTFSNKGSQNLLVD 114
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+L LAEIGPKFEHH VFPARTNTEFV+++S S LKMRVWERGAGATLACGTGACAVVVAA
Sbjct: 115 ELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMRVWERGAGATLACGTGACAVVVAA 174
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VLEG A R CTVDLPGGPL IEWK+EDNHVYMTG AE+V+YGS+ L
Sbjct: 175 VLEGRAGRDCTVDLPGGPLQIEWKDEDNHVYMTGSAELVYYGSLPL 220
>gi|326204224|ref|ZP_08194084.1| diaminopimelate epimerase [Clostridium papyrosolvens DSM 2782]
gi|325985735|gb|EGD46571.1| diaminopimelate epimerase [Clostridium papyrosolvens DSM 2782]
Length = 277
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 140/289 (48%), Positives = 192/289 (66%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVD-NRNSTE-PRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K GLGND+I VD +N + P + + K+ DR+FGIG+DG++ M + D+
Sbjct: 1 MKFTKMQGLGNDYIYVDCTKNIIDNPSVV---SKKVSDRHFGIGSDGLVLIMKS-DIADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FNSDGSE EMCGN +RC +++ + L K++ T+ T AG+ V +++ +D KV
Sbjct: 57 RMRMFNSDGSESEMCGNAIRCVGKYVFD-NGLTDKKNLTIETLAGIKVLDLKIEDNKVVQ 115
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
+VDMGEPIL++ +P + + KD+ + +S ++VDG + VT VSMGNPH +T+
Sbjct: 116 VRVDMGEPILESKQIP--VDSEKDRFISES-VEVDGYNYKVTAVSMGNPHAITYVDDTAS 172
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
L E+GPK E H +FP + N EFVE+I + LKMRVWERGAG TLACGTGA A
Sbjct: 173 ------FPLYEVGPKMETHKLFPKKINAEFVEVIDRTTLKMRVWERGAGETLACGTGASA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V+VA+VL G +ER T+ L GG L IEW E+DNHVYMTGPAE VF G +
Sbjct: 227 VLVASVLNGLSERAATIKLLGGDLIIEWSEKDNHVYMTGPAEKVFEGEI 275
>gi|374997178|ref|YP_004972677.1| diaminopimelate epimerase [Desulfosporosinus orientis DSM 765]
gi|357215544|gb|AET70162.1| diaminopimelate epimerase [Desulfosporosinus orientis DSM 765]
Length = 281
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 143/291 (49%), Positives = 185/291 (63%), Gaps = 19/291 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITP---EQAAKLCDRNFGIGADGVIFAMPGVNGTD 135
+ F+K HGLGNDFI +D + + E A KLC R FGIG DG++ +P D
Sbjct: 1 MEFIKMHGLGNDFIFLDQMSDSGEEGNANYSELAEKLCHRRFGIGGDGLVVILPS-KVAD 59
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-QDDGKVK 194
MRIFNSDGSEPEMCGNG+RCFAR++ + + + S V TGAG++ P++ DG+V+
Sbjct: 60 ARMRIFNSDGSEPEMCGNGIRCFARYLYD-QGIVVSDSMLVETGAGILKPKLFIKDGQVQ 118
Query: 195 ---VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
VDMGEP+LKA +P + + V+ ++ G + T VSMGNPHC+ F ++
Sbjct: 119 GVQVDMGEPVLKAELIPV---LGEGEPVIGRSIEALGETYLYTAVSMGNPHCIIF-VEDY 174
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
L D+ +GP E HS+FP +TN EF++I SP ++ M+VWERGAG TLACGTGAC
Sbjct: 175 ATLDFDR-----VGPAIEKHSLFPRKTNVEFIQINSPQEITMKVWERGAGPTLACGTGAC 229
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
A VVA+VL ER+ TV LPGG L IEW DNHVYMTGPA F G L
Sbjct: 230 ASVVASVLNHKTERKVTVHLPGGDLFIEWG-ADNHVYMTGPAAYAFKGEWL 279
>gi|402574166|ref|YP_006623509.1| diaminopimelate epimerase [Desulfosporosinus meridiei DSM 13257]
gi|402255363|gb|AFQ45638.1| diaminopimelate epimerase [Desulfosporosinus meridiei DSM 13257]
Length = 281
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 150/292 (51%), Positives = 183/292 (62%), Gaps = 21/292 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT---PEQAAKLCDRNFGIGADGVIFAMPGVNGTD 135
+ F+K GLGNDFI +D + ++ T PE A KLC R FGIG DG+I +P D
Sbjct: 1 MEFIKMQGLGNDFIFLDRFSVSDEDGTEDYPELARKLCHRQFGIGGDGLIVVLPS-KVAD 59
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAG-----LIVPEIQDD 190
MRIFNSDGSEPEMCGNG+RCFAR+I + + L V TGAG L + E Q
Sbjct: 60 ARMRIFNSDGSEPEMCGNGIRCFARYIYD-QGLIISDPMLVETGAGVLKLKLFIKEGQVQ 118
Query: 191 GKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKE 250
G V+VDMGEPIL+A +P + + VV ++V G K+ T VSMGNPHCV F ++
Sbjct: 119 G-VQVDMGEPILRADLIPV---LGEGEPVVGQSIEVLGQKYLFTAVSMGNPHCVIF-VED 173
Query: 251 GQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
L D+ +GP E HS+FP +TN EF++I SP ++ M+VWERGAG TLACGTGA
Sbjct: 174 FSALDFDR-----VGPAIEKHSLFPRKTNVEFIQINSPQEITMKVWERGAGPTLACGTGA 228
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
CA VVAA+L ER TV LPGG L IEW DN VYMTGP VF G L
Sbjct: 229 CASVVAAILNNKTERIVTVHLPGGDLLIEWG-LDNRVYMTGPGNYVFKGEWL 279
>gi|375309216|ref|ZP_09774497.1| diaminopimelate epimerase [Paenibacillus sp. Aloe-11]
gi|375078525|gb|EHS56752.1| diaminopimelate epimerase [Paenibacillus sp. Aloe-11]
Length = 276
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 135/288 (46%), Positives = 187/288 (64%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HGLGNDFI+ P E A +LCDR+FG+GADG+++ +P D+ M
Sbjct: 1 MEFTKMHGLGNDFIVWFGHQEL-PSDASELAVRLCDRHFGVGADGLVYILPS-EKADFRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT-GAGLIVPEIQDDGK----V 193
RI NSDGSE E CGN +RC A+++ + ++++ ++ T+ T GAG+ E+ + + V
Sbjct: 59 RIINSDGSEAEQCGNAIRCAAKYVYDRKHIS-RERITIETLGAGVQQVELTVEDELVRLV 117
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
KVDMGEPIL+ + +PT+L ++ V+ ++ G + T VSMGNPHCV +
Sbjct: 118 KVDMGEPILEGTKIPTTLDLDR---VIHEPIEAGGSGFRFTAVSMGNPHCVIYVEN---- 170
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
L GPK E HS+FP +TN EF + S + ++MRVWERGAG TLACGTGACA
Sbjct: 171 --APGFELETWGPKLESHSLFPNKTNVEFASVRSRNHIEMRVWERGAGPTLACGTGACAT 228
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+VA+VL G+++RR V L GG LDIEW E+DNHVYMTGPAE+V+ G +
Sbjct: 229 LVASVLNGYSDRRAMVSLKGGDLDIEWNEDDNHVYMTGPAEIVYDGRL 276
>gi|150398764|ref|YP_001322531.1| diaminopimelate epimerase [Methanococcus vannielii SB]
gi|150011467|gb|ABR53919.1| Diaminopimelate epimerase [Methanococcus vannielii SB]
Length = 292
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 140/302 (46%), Positives = 187/302 (61%), Gaps = 18/302 (5%)
Query: 67 RTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLC-DRNFGIGADGVI 125
++S L + + F K HGLGND+I ++ E P + +K DR+FGIG+DG++
Sbjct: 4 KSSILPKNSDKVVKFTKMHGLGNDYIYINA--VLEDIKNPNEFSKFVSDRHFGIGSDGLV 61
Query: 126 FAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVP 185
+ D+ MR+FNSDGSE EMCGN +RC +F+ + L K+ T+ T AG+ V
Sbjct: 62 LILDS-KIADFKMRMFNSDGSEAEMCGNAIRCVGKFVYD-NKLTDKKIITIETLAGVKVL 119
Query: 186 EIQDDGK----VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNP 241
E+ +G+ VKVDMGEP L+A +P + V+ +D +G + TCVSMGNP
Sbjct: 120 EMTVEGEEVVLVKVDMGEPTLEALKIPV---ISDKYPVINETIDSNGYNFKFTCVSMGNP 176
Query: 242 HCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAG 301
H VT+ VD L +IGP FE H FP +TN EFV +I+ LKMRVWERGAG
Sbjct: 177 HAVTYIED------VDNFELQKIGPLFEAHEKFPKKTNVEFVNVINDETLKMRVWERGAG 230
Query: 302 ATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
TLACGTGACAV+V++VL G ++R+ TV L GG L +EW E +NHVYMTGPA VF G +
Sbjct: 231 ETLACGTGACAVLVSSVLNGLSKRKATVKLLGGDLIVEWSESNNHVYMTGPATKVFEGKI 290
Query: 362 LL 363
L
Sbjct: 291 KL 292
>gi|383754404|ref|YP_005433307.1| putative diaminopimelate epimerase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381366456|dbj|BAL83284.1| putative diaminopimelate epimerase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 284
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 139/286 (48%), Positives = 186/286 (65%), Gaps = 16/286 (5%)
Query: 80 HFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMR 139
+F K+ G GNDF+L D + + A K+CDR++G+GADG++ +P + D+ MR
Sbjct: 3 NFTKWQGCGNDFVLFDCLQE-DIQDYAALARKVCDRHYGVGADGILIVLPS-DKADFRMR 60
Query: 140 IFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-QDDGKVK---V 195
IFN+DGSE EMCGNG+RCFAR++ + L K SFTV TGAG++VPEI DG+VK V
Sbjct: 61 IFNTDGSEAEMCGNGIRCFARYLYDF-GLTEKTSFTVETGAGILVPEIVLADGQVKGVKV 119
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
DMGEP L ++P + Q V+ + V G ++ T VSMGNPHCV F + +N
Sbjct: 120 DMGEPHLLGEEIP--VVGFDGQKVIDRSMSVAGKEYKFTAVSMGNPHCVIF-VDDAENFP 176
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ E+G KFE H +FP +TNTEFVE+ ++MRVWERGA TLACGTG+CA VV
Sbjct: 177 I-----YELGHKFETHELFPRKTNTEFVEVRDRRHVRMRVWERGAAVTLACGTGSCATVV 231
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
A +L +R V+L GG L I W ++NHV+MTGPAE+VF G +
Sbjct: 232 AGILNDKLDREAEVELDGGKLLIHWA-DNNHVFMTGPAELVFSGEL 276
>gi|431794660|ref|YP_007221565.1| diaminopimelate epimerase [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430784886|gb|AGA70169.1| diaminopimelate epimerase [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 284
Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 142/291 (48%), Positives = 178/291 (61%), Gaps = 19/291 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEP---RITPEQAAKLCDRNFGIGADGVIFAMPGVNGTD 135
+ F+K HGLGNDF+ +D S R PE A KLC R FG+G DG+I +P D
Sbjct: 1 MEFIKMHGLGNDFVFLDQFESVTDLGDRSYPELALKLCHRQFGVGGDGLIVVLPS-EQAD 59
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK--- 192
MRIFNSDGSEPEMCGNG+RCFAR+I + + K V T AG++ ++ +G
Sbjct: 60 AKMRIFNSDGSEPEMCGNGIRCFARYIYD-QGYVKKNPLQVETLAGILTLQLALEGDRVT 118
Query: 193 -VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
V VDMGEPILK +P + + VV + V+G ++ T VSMGNPHCV F
Sbjct: 119 GVTVDMGEPILKPEFIPVR---AQREPVVAETIQVEGQEFKFTAVSMGNPHCVIFMEN-- 173
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+ L+ GP E H++FP +TN EF+ + + ++L M+VWERGAG TLACGTGAC
Sbjct: 174 ----YESLDFERWGPAIEKHALFPRKTNVEFIVVNNRNELTMKVWERGAGPTLACGTGAC 229
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
A V AVL G ER+ TV LPGG L I+W DN VYMTGPA VF G VL
Sbjct: 230 ASAVGAVLNGKTERKVTVHLPGGDLLIDWG-SDNRVYMTGPATYVFRGIVL 279
>gi|78044318|ref|YP_360325.1| diaminopimelate epimerase [Carboxydothermus hydrogenoformans
Z-2901]
gi|123576129|sp|Q3AC09.1|DAPF_CARHZ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|77996433|gb|ABB15332.1| diaminopimelate epimerase [Carboxydothermus hydrogenoformans
Z-2901]
Length = 274
Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 141/288 (48%), Positives = 185/288 (64%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVD---NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTD 135
+ F+K HGLGNDF++VD N+N ++ + A K+CDR FGIGADG++ +P D
Sbjct: 1 MEFLKMHGLGNDFVVVDEIKNQNLVNKNLS-DLAKKICDRRFGIGADGLVLLLPS-EKAD 58
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ MRI NSDGSE EMCGN +RC AR+ E N K+ V T AG+I PE+ ++ V+V
Sbjct: 59 FKMRIINSDGSEAEMCGNAIRCVARYYVEKYN-PAKKQLEVETLAGIIKPEVLENNMVRV 117
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
DMG PILK ++P ++ ++ V L+V G K+ T VSMGNPH V F
Sbjct: 118 DMGRPILKPQEIPVAV----EEEPVNIPLEVLGQKFYFTAVSMGNPHAVIFVDS------ 167
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ K+ L + GP E H +FP +TN EFVEI+SP+++K+ VWERGAGATLACGTGA AVVV
Sbjct: 168 LAKIELEKYGPLIETHPLFPRKTNVEFVEILSPAKVKVFVWERGAGATLACGTGASAVVV 227
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A + GH + V LPGG L I W ++ VYMTGPAE+VF G L
Sbjct: 228 AGRILGHLQEDVEVVLPGGSLFINWVFGES-VYMTGPAEIVFKGEYFL 274
>gi|147678135|ref|YP_001212350.1| diaminopimelate epimerase [Pelotomaculum thermopropionicum SI]
gi|229813238|sp|A5D193.1|DAPF_PELTS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|146274232|dbj|BAF59981.1| diaminopimelate epimerase [Pelotomaculum thermopropionicum SI]
Length = 280
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/287 (48%), Positives = 183/287 (63%), Gaps = 17/287 (5%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+HF K HGLGNDFILVD + P P A K+CDR+FG+GADG++ +P + D +
Sbjct: 1 MHFTKAHGLGNDFILVDCFKEKVNPEDFPGLAVKMCDRHFGVGADGLVLLLPSPS-ADVS 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKVK-- 194
MRIFN DGSE EMCGN +RC A+++ E + V T AG+++PE+ ++G+V+
Sbjct: 60 MRIFNPDGSEAEMCGNAIRCVAKYLYE-RGMVKADRIRVETLAGVMIPELLVEEGRVRLV 118
Query: 195 -VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMGEP L+ S++P + V+ L+ G + +T VSMGNPHCV F Q+
Sbjct: 119 RVDMGEPRLERSEIPMEGPPGR---VLGEPLETGGAVYRITAVSMGNPHCVIFV----QD 171
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
L D + GP E H FP RTN EF+++++P ++KMRVWERGAG T+ACGTGACA
Sbjct: 172 L--DAVPFQTAGPLIETHPAFPRRTNVEFIQVLTPEEIKMRVWERGAGETMACGTGACAA 229
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
VVA VL G+ RR TV L G L IEW E HVYM+GPAE VF G
Sbjct: 230 VVAGVLNGYTGRRVTVHLKAGDLFIEWP-EGKHVYMSGPAEEVFSGE 275
>gi|376260177|ref|YP_005146897.1| diaminopimelate epimerase [Clostridium sp. BNL1100]
gi|373944171|gb|AEY65092.1| diaminopimelate epimerase [Clostridium sp. BNL1100]
Length = 277
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/289 (48%), Positives = 192/289 (66%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAA--KLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K GLGND+I VD TE I A K+ DR+FGIG+DG++ M + D+
Sbjct: 1 MKFTKMQGLGNDYIYVD---CTENIIADPSAVSKKVSDRHFGIGSDGLVLIMKS-DIADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
MR+FNSDGSE EMCGN +RC +++ + L K++ T+ T AG+ V +++ + K
Sbjct: 57 RMRMFNSDGSESEMCGNAIRCVGKYVFD-NGLTDKRNLTIETLAGIKVLDLRIEDKKVVQ 115
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V+VDMGEPIL+ +P + ++KD+ + +S +++DG + VT VSMGNPH +T+
Sbjct: 116 VRVDMGEPILEPKKIP--VDSDKDKFISES-IEIDGNNYKVTAVSMGNPHAITY-----V 167
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
+ VD L E+GPK E H +FP + N EFV++I + L+MRVWERGAG TLACGTGA A
Sbjct: 168 DDTVD-FPLYEVGPKMETHKLFPRKINAEFVQVIDTTTLRMRVWERGAGETLACGTGASA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V+VA+VL G +ER T+ L GG L IEW E+DNHVYMTGPAE VF G +
Sbjct: 227 VLVASVLNGLSERAATIKLLGGELFIEWSEKDNHVYMTGPAEKVFEGEI 275
>gi|310642749|ref|YP_003947507.1| diaminopimelate epimerase [Paenibacillus polymyxa SC2]
gi|386041830|ref|YP_005960784.1| diaminopimelate epimerase [Paenibacillus polymyxa M1]
gi|309247699|gb|ADO57266.1| Diaminopimelate epimerase [Paenibacillus polymyxa SC2]
gi|343097868|emb|CCC86077.1| diaminopimelate epimerase [Paenibacillus polymyxa M1]
Length = 276
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 135/287 (47%), Positives = 182/287 (63%), Gaps = 15/287 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K +GLGNDFI+ P E A +LCDR+FGIGADG+++ +P + D+ M
Sbjct: 1 MEFTKMNGLGNDFIVWYGHQEL-PSDASELAVRLCDRHFGIGADGLVYILPS-DKADFRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV---K 194
RI NSDGSE E CGN +RC A+++ + +++N +Q GAG+ E+ ++G V K
Sbjct: 59 RIINSDGSEAEQCGNAIRCAAKYVYDRKHINREQITIETLGAGVQQVELTVENGAVRMVK 118
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMGEPIL+ +PT+L +V+ ++ G + T VSMGNPHCV +
Sbjct: 119 VDMGEPILEGLKIPTTLDLT---NVIDEPIEAGGSGFRFTAVSMGNPHCVIYVED----- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+L GPK E H +FP +TN EF + S + MRVWERGAG TLACGTGACA +
Sbjct: 171 -APSFDLEAWGPKLECHPLFPKKTNVEFATVRSRKHIDMRVWERGAGPTLACGTGACATL 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA+VL G+++RR V L GG LDIEW E+DNH+YMTGPAE+VF G +
Sbjct: 230 VASVLNGYSDRRAMVSLKGGDLDIEWSEDDNHIYMTGPAEIVFEGRI 276
>gi|374324710|ref|YP_005077839.1| diaminopimelate epimerase [Paenibacillus terrae HPL-003]
gi|357203719|gb|AET61616.1| diaminopimelate epimerase [Paenibacillus terrae HPL-003]
Length = 277
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 137/287 (47%), Positives = 181/287 (63%), Gaps = 15/287 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HGLGNDFI+ P + E A +LCDR+FG+GADG+++ +P D+ M
Sbjct: 1 MEFTKMHGLGNDFIVWFGHGELPPDAS-ELAVRLCDRHFGVGADGLVYILPS-EKADFCM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQD-DG---KVK 194
RI NSDGSE E CGN +RC A+++ + ++++ +Q GAG+ E+ DG +VK
Sbjct: 59 RIINSDGSEAEQCGNAIRCAAKYVYDRKHISREQITIETLGAGVQQVELTVVDGLVRQVK 118
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMGEPIL+ +PT+L SV+ ++ G + T VSMGNPHCV +
Sbjct: 119 VDMGEPILEGLKIPTTLDL---ASVINQSIEAGGSGFRFTAVSMGNPHCVIYVED----- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+L GPK E H +FP +TN EF + S + MRVWERGAG TLACGTGACA +
Sbjct: 171 -APDFDLEAWGPKLECHPLFPRKTNVEFATVRSRDHIDMRVWERGAGPTLACGTGACATL 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA+VL G+++RR V L GG LDIEW E DNHVYMTGPAEVV+ G +
Sbjct: 230 VASVLNGYSDRRAIVSLKGGDLDIEWNENDNHVYMTGPAEVVYDGRL 276
>gi|392426919|ref|YP_006467913.1| diaminopimelate epimerase [Desulfosporosinus acidiphilus SJ4]
gi|391356882|gb|AFM42581.1| diaminopimelate epimerase [Desulfosporosinus acidiphilus SJ4]
Length = 281
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 145/290 (50%), Positives = 182/290 (62%), Gaps = 18/290 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNST--EPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ FVK HGLGNDF+ +D+ + T +P P+ A KLC R FGIG DG+I +P D
Sbjct: 1 MEFVKMHGLGNDFVFLDHFSLTPEKPVDYPKLAQKLCHRQFGIGGDGLIVILPS-KVADA 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLI--VPEIQDD--GK 192
MRI NSDGSEPEMCGNG+RCFAR++ + + + V T AG++ V +I++
Sbjct: 60 RMRIINSDGSEPEMCGNGIRCFARYVYD-RGIVSQNPMRVETLAGVLTLVLDIKESEVQG 118
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V+VDMGEPILKA +P ++ + VV+ L+V G ++ T VSMGNPHCV F
Sbjct: 119 VRVDMGEPILKADLIPV---LSEVEPVVEQPLEVLGQTFHYTAVSMGNPHCVIFVND--- 172
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
L+ GP E H +FP +TN EF+ + SP ++ M+VWERGAG TLACGTGACA
Sbjct: 173 ---YSALDFERFGPAIEKHPLFPRKTNVEFIRVDSPKEMTMKVWERGAGPTLACGTGACA 229
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VAAVL ER TV LPGG L IEW DNHVYMTGPA VF G L
Sbjct: 230 SAVAAVLNKKTERTVTVHLPGGDLLIEWG-ADNHVYMTGPAAYVFKGEWL 278
>gi|116074845|ref|ZP_01472106.1| diaminopimelate epimerase [Synechococcus sp. RS9916]
gi|116068067|gb|EAU73820.1| diaminopimelate epimerase [Synechococcus sp. RS9916]
Length = 372
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 137/294 (46%), Positives = 182/294 (61%), Gaps = 21/294 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNS-TEPRIT---PEQAAKLCDRNFGIGADGVIFAMPGVNG 133
L F KY GLGNDF+L++ R+ + IT P+ ++CDR FG+G DG+I A+P
Sbjct: 1 MLQFSKYQGLGNDFVLIEGRDGRLDASITSPDPQWVRRICDRRFGVGGDGIILALPPEGP 60
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKV 193
+ MRIFN+DGSE EMCGNG+RC ARF+A+ + +S+++ T AGLI+P +Q+DG++
Sbjct: 61 GELRMRIFNADGSEAEMCGNGIRCLARFLADSDGDAPGRSWSIETPAGLIIPVLQEDGQI 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
KVDMG P+L VPT+L+ + Q + + EL ++G V V MGNPH V
Sbjct: 121 KVDMGAPMLAPDTVPTTLAVGE-QGLPQGELTINGDLLKVAAVGMGNPHVV--------- 170
Query: 254 LKVDKLNLAEI-----GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
V +LA I G E FPA+TN F+++ L +RVWERGAG TLACGT
Sbjct: 171 --VPVPDLASIPFDAWGAALEVDPSFPAKTNVHFLQVKGSDALDIRVWERGAGPTLACGT 228
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
GACA +VAA L G +E V LPGGPL I W + V+MTGPAE VF G V+
Sbjct: 229 GACATLVAAHLLGLSEATAEVMLPGGPLQISWPDRGGSVFMTGPAEAVFDGVVV 282
>gi|374582978|ref|ZP_09656072.1| diaminopimelate epimerase [Desulfosporosinus youngiae DSM 17734]
gi|374419060|gb|EHQ91495.1| diaminopimelate epimerase [Desulfosporosinus youngiae DSM 17734]
Length = 283
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 143/290 (49%), Positives = 180/290 (62%), Gaps = 18/290 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F+K HGLGNDF+ +D+ + ++ + PE A KLC R FGIG DG+ +P N D
Sbjct: 1 MEFIKMHGLGNDFVFLDHYSVSDRDVDYPELARKLCHRQFGIGGDGLAVILPS-NVADAR 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAG-----LIVPEIQDDGK 192
MRIFN DGSEPEMCGN +RCFAR++ + + + V TGAG L + E Q G
Sbjct: 60 MRIFNPDGSEPEMCGNAIRCFARYVYDQKIVIISDPMLVETGAGILKLNLFIKEGQVQG- 118
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V+VDMGEPIL+A +P + VV ++V G + T VSMGNPHCV F ++
Sbjct: 119 VQVDMGEPILRADLIPV---LGVGEPVVGQPIEVLGETYMYTAVSMGNPHCVIF-VEDFS 174
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
L D+ +GP E H +FP +TN EF++I SP ++ M+VWERGAG TLACGTGACA
Sbjct: 175 TLDFDR-----VGPALEKHPLFPRKTNVEFIQINSPQEITMKVWERGAGPTLACGTGACA 229
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VAA+L ER TV LPGG L IEW DNHVYMTGP VF G L
Sbjct: 230 STVAAILNNKTERAVTVHLPGGDLFIEWG-PDNHVYMTGPGAYVFKGEWL 278
>gi|390453275|ref|ZP_10238803.1| diaminopimelate epimerase [Paenibacillus peoriae KCTC 3763]
Length = 277
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 134/288 (46%), Positives = 183/288 (63%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HGLGNDFI+ P E A +LCDR+FG+GADG+++ +P D+ M
Sbjct: 1 MEFTKMHGLGNDFIVWFGHQEL-PSDASELAVRLCDRHFGVGADGLVYILPS-EKADFRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT-GAGLIVPEIQDDGK----V 193
RI NSDGSE E CGN +RC A+++ + ++++ ++ T+ T GAG+ E+ + V
Sbjct: 59 RIINSDGSEAEQCGNAIRCAAKYVYDRKHIS-RERITIETLGAGVQQVELTVENGLVRLV 117
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
KVDMGEPIL+ +P +L ++ V+ ++ G + T VSMGNPHCV +
Sbjct: 118 KVDMGEPILEGLKIPATLDLDR---VIHEPIEAGGSGFRFTAVSMGNPHCVIYVED---- 170
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
LA GPK E H +FP +TN EF + S ++MRVWERGAG TLACGTGACA
Sbjct: 171 --APSFELAAWGPKLESHPLFPKKTNVEFATVRSRDHIEMRVWERGAGPTLACGTGACAT 228
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+VA+VL G+++RR V L GG LDIEW E+DNHVYMTGPAE+V+ G +
Sbjct: 229 LVASVLNGYSDRRAIVSLKGGDLDIEWNEDDNHVYMTGPAEIVYDGRL 276
>gi|296133317|ref|YP_003640564.1| diaminopimelate epimerase [Thermincola potens JR]
gi|296031895|gb|ADG82663.1| diaminopimelate epimerase [Thermincola potens JR]
Length = 277
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 139/288 (48%), Positives = 180/288 (62%), Gaps = 16/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HGLGNDFIL+++ + E A +LC+R GIGADG++F +P D M
Sbjct: 1 MQFTKMHGLGNDFILIEDFDKNNLANGAELAVRLCNRKTGIGADGLVFILPS-ETADIQM 59
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQD----DGKVK 194
RIFN DGSEPEMCGN +RCFAR++ + + KQ+ V T AG+ +P I + + V+
Sbjct: 60 RIFNPDGSEPEMCGNAIRCFARYLYD-HGIVKKQTIRVETLAGIRIPRIIENPAGEALVE 118
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMGEP L+ +P K VV L V+G +NVTCVSMGNPHCV F
Sbjct: 119 VDMGEPELERGRIPMLGGPGK---VVAEPLPVNGSTYNVTCVSMGNPHCVIFVDN----- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ +A IGP+ E H+ FP +TN EFV++++ ++++MRVWERGAG T+ACGTGACA
Sbjct: 171 -AEDYPVAAIGPRVETHTAFPNKTNVEFVQVLNENEVRMRVWERGAGITMACGTGACASA 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VAA L G R V L GG L I W +DNHVYM GPA VF G+ L
Sbjct: 230 VAAHLNGFTGREVIVHLDGGDLFIRWA-QDNHVYMMGPAAYVFKGTTL 276
>gi|442804417|ref|YP_007372566.1| diaminopimelate epimerase DapF [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740267|gb|AGC67956.1| diaminopimelate epimerase DapF [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 278
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 140/288 (48%), Positives = 186/288 (64%), Gaps = 21/288 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAAKLC-DRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG+GND++ V N E R+ P + A+ +R+FG+G+DG++ +P D+
Sbjct: 1 MKFAKMHGIGNDYVYV---NCFEERVENPSELARFVSNRHFGVGSDGLVLILPS-EKADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDDGKV- 193
MR+FNSDGSE EMCGN +RC +++ + + K++ TV T AG+ V E+ DGKV
Sbjct: 57 RMRMFNSDGSEAEMCGNAIRCVGKYVYD-NRMTDKKTVTVETLAGIKVLELFTGKDGKVE 115
Query: 194 --KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
KVDMGEP+L D+P K + + + G ++VTCVSMGNPH VTF
Sbjct: 116 SVKVDMGEPMLNPRDIPVDSGKEK---FINEPVKIGGEVYHVTCVSMGNPHAVTFVGN-- 170
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
V L +IGP+ E+HS+FP R N EFVE+I+ S L+MRVWERGAG T+ACGTGAC
Sbjct: 171 ----VKDFPLEKIGPQMENHSLFPNRVNAEFVEVINRSYLRMRVWERGAGETMACGTGAC 226
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
AV+VAA L G A+R+ TV+L GG L IEW E +NHVY TGPA VF G
Sbjct: 227 AVLVAAYLNGIADRKATVELLGGNLTIEWDENNNHVYKTGPATHVFTG 274
>gi|373454482|ref|ZP_09546348.1| diaminopimelate epimerase [Dialister succinatiphilus YIT 11850]
gi|371935757|gb|EHO63500.1| diaminopimelate epimerase [Dialister succinatiphilus YIT 11850]
Length = 277
Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 139/288 (48%), Positives = 180/288 (62%), Gaps = 14/288 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+HFVK+ LGNDF+ V+ +T + ++CDR+FGIGADG+IF +P + D M
Sbjct: 1 MHFVKWQALGNDFVFVNGFKEKLEEVT-KHTKEICDRHFGIGADGIIFVLPS-DKADLKM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RIFNSDGSE EMCGNG+R FA++ EL L ++ +V TGAG++ PEI D+G V+VDMG
Sbjct: 59 RIFNSDGSEAEMCGNGIRAFAKWAHEL-GLVKEKRISVETGAGILYPEILDNGMVRVDMG 117
Query: 199 EPILKASDVPTSLSANKDQSVVKSEL--DVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
P L A ++P + ++ L + +G + VTCVSMGNPHCV F
Sbjct: 118 CPHLDAKEIPAE--GFGEGPIINQTLANEKNGKSYQVTCVSMGNPHCVIFVDD------A 169
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
+ + + E GP E FP +TN EFVE +SP+ L+MRVWERGAG TLACGTG CA V A
Sbjct: 170 EAVPVTEEGPNLETDPHFPKKTNVEFVEQLSPNHLRMRVWERGAGVTLACGTGTCATVAA 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWK-EEDNHVYMTGPAEVVFYGSVLL 363
A+L G V L GG L IEW +H++MTGPAE VF G LL
Sbjct: 230 AILNGRVSGGADVTLDGGQLHIEWDGNPKDHIFMTGPAEKVFEGDYLL 277
>gi|121533712|ref|ZP_01665539.1| Diaminopimelate epimerase [Thermosinus carboxydivorans Nor1]
gi|121307703|gb|EAX48618.1| Diaminopimelate epimerase [Thermosinus carboxydivorans Nor1]
Length = 279
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 186/292 (63%), Gaps = 20/292 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K+HG GNDF++V N + +I + A K+CDR+FGIGADG++ P D+
Sbjct: 1 MQFTKWHGQGNDFVIV---NGFQEKIEDYAQAAVKICDRHFGIGADGLVIVGPS-QVADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE-IQDDG---K 192
MRIFNSDGSE EMCGN RC AR++ E L K T+ T AG I PE I ++G
Sbjct: 57 RMRIFNSDGSEAEMCGNVTRCVARYVYEY-GLTDKTKITLETLAGPIKPELIFENGVLRT 115
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V+VDMGEP LK + +P + D + L V+ +++TCVSMGNPHC+ F
Sbjct: 116 VRVDMGEPRLKRAQIP--MIGEPDSEAINVPLIVNDKTYDITCVSMGNPHCIIFVDD--- 170
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD++NLA +GP E+H FP +TN EFV++++ +++MRVWERGAG TLACGTGA A
Sbjct: 171 ---VDEINLAAVGPLIENHPTFPRKTNVEFVQVLNDHEMRMRVWERGAGITLACGTGASA 227
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
+VAAVL G R T+ L GG L +EW DNHVYM+GPA VF G LL+
Sbjct: 228 TLVAAVLNGKTGRVATIHLDGGDLVLEWG-NDNHVYMSGPAVEVFRGEYLLS 278
>gi|403378893|ref|ZP_10920950.1| diaminopimelate epimerase [Paenibacillus sp. JC66]
Length = 278
Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 145/288 (50%), Positives = 180/288 (62%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HGLGNDFI+V P E A LC+R FGIGADG+++ +P D M
Sbjct: 1 MKFTKMHGLGNDFIVVSGEREL-PDNVSELAISLCNRYFGIGADGLVYILPS-ERADVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT-GAGLIVPEIQ-DDGKV--- 193
RI NSDGSE E CGN +RC A++ + L K TV T GAG+ ++Q DGKV
Sbjct: 59 RIINSDGSEAEQCGNAIRCVAKYAYD-HQLAAKTEMTVETLGAGVQKVQLQVADGKVQAV 117
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+VDMGEPIL+ + VPT++ A+ VV ++V+G ++ T VSMGNPHCV + Q
Sbjct: 118 RVDMGEPILQGTQVPTTIDAD---IVVNHPVEVNGRTFHFTAVSMGNPHCVIYVDDAVQ- 173
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+L GP E H +FP + N EFV + S MRVWERGAG TLACGTGACA
Sbjct: 174 -----FDLDTWGPLLEKHPLFPNKINVEFVTVKSRDYADMRVWERGAGPTLACGTGACAT 228
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+V++VL G +R+ TV L GG L IEW EEDNHVYMTGPAE VF GSV
Sbjct: 229 LVSSVLNGLTDRQATVSLKGGDLFIEWSEEDNHVYMTGPAEEVFTGSV 276
>gi|333371272|ref|ZP_08463230.1| diaminopimelate epimerase [Desmospora sp. 8437]
gi|332976391|gb|EGK13241.1| diaminopimelate epimerase [Desmospora sp. 8437]
Length = 280
Score = 260 bits (664), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 142/288 (49%), Positives = 178/288 (61%), Gaps = 19/288 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K HGLGNDFI+V T P+ PE A +LCDR FG+GADG++F +P G D
Sbjct: 1 MMRFTKMHGLGNDFIVVTA--DTWPQEAPELARRLCDRRFGVGADGLVFLLPSRAG-DVR 57
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGK---- 192
MRI N+DGSE E CGN VRC A++ E ++G K+ V TGAGL ++ DG
Sbjct: 58 MRILNADGSEAEQCGNAVRCVAKYY--YERISGAKKEIIVETGAGLQSVRLETDGSQVES 115
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
+ VDMG PIL+A VP +L + VV + + + T VSMGNPH V F +
Sbjct: 116 ICVDMGRPILEADRVPVALEGER---VVAHPVKIGEESFRFTAVSMGNPHAVIF-VDDAA 171
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ GP+ E H +FP +TN EFV + SP +L+MRVWERG G TLACGTGACA
Sbjct: 172 AFPVETW-----GPRLETHPLFPNKTNVEFVTVHSPRELEMRVWERGVGPTLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
+VAAVL G A+RR V L GG L+IEW+E D+ VYMTGPA VF G
Sbjct: 227 SLVAAVLNGTADRRARVRLKGGDLEIEWREGDDRVYMTGPARTVFEGE 274
>gi|116070548|ref|ZP_01467817.1| Diaminopimelate epimerase [Synechococcus sp. BL107]
gi|116065953|gb|EAU71710.1| Diaminopimelate epimerase [Synechococcus sp. BL107]
Length = 354
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 134/293 (45%), Positives = 181/293 (61%), Gaps = 22/293 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNS------TEPRITPEQAAKLCDRNFGIGADGVIFAMPGV 131
L F KY GLGNDF++++ R ++P P ++CDR FG+G DGVI A+P
Sbjct: 1 MLQFSKYQGLGNDFLILEGRQDQLDVAISDP--DPNWVRRICDRRFGVGGDGVILALPPQ 58
Query: 132 NGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG 191
D MRIFN+DG+E EMCGNG+RC AR++A+ + + + T AG+I PE+ +G
Sbjct: 59 ADGDLRMRIFNADGTEAEMCGNGIRCLARYLADTDGEAPGCRWAIETPAGMIRPELMTNG 118
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
+++VDMG P L+A+ +PT+L + + L++DGV NV V MGNPH V
Sbjct: 119 QLRVDMGAPFLEATSIPTTLEPLG--GLPRGSLEIDGVPLNVASVGMGNPHVV------- 169
Query: 252 QNLKVDKLNL---AEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
+ VD L+L + G E H VFPA+TN F+++ S +L++RVWERGAG TLACGT
Sbjct: 170 --VPVDDLSLIPFEQWGAALEVHPVFPAKTNVHFLKVHSRHRLEIRVWERGAGPTLACGT 227
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
GACA +VAAVL A+ + V LPGGPL I W V MTGPAE VF G +
Sbjct: 228 GACATLVAAVLLDLADEQAEVMLPGGPLLISWPGRRGSVLMTGPAEAVFDGVI 280
>gi|332980959|ref|YP_004462400.1| diaminopimelate epimerase [Mahella australiensis 50-1 BON]
gi|332698637|gb|AEE95578.1| diaminopimelate epimerase [Mahella australiensis 50-1 BON]
Length = 277
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 135/287 (47%), Positives = 184/287 (64%), Gaps = 16/287 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+HFVK HGLGNDFI+VD N+ R + A LCDR+FGIGADG+I +P + D M
Sbjct: 1 MHFVKMHGLGNDFIVVDEFNAQSDRDYNKLAPMLCDRHFGIGADGIIIVLPS-DIADARM 59
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KVK 194
RI N+DGSE EMCGNG+RCFA+++ E + KQ +V T AG++ PE+ +G KVK
Sbjct: 60 RIVNADGSEAEMCGNGIRCFAKYVYE-SGIIKKQVLSVETLAGIMKPELFVEGDEVQKVK 118
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG+P + +P + + +V+ L+VD + +T +SMG PH V F
Sbjct: 119 VDMGKPDFEPGAIPAFMPGTR---IVERPLEVDSQPYAITSMSMGVPHTVIFVDD----- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
VD++++ +GPK E H +FP +TN FVE+++ ++K+R WERGAGATLACGTG+CA
Sbjct: 171 -VDEVDIIGLGPKIEKHPIFPKKTNVNFVEVLNDHEIKVRTWERGAGATLACGTGSCASA 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VAA + G R TV L G L+I W E+D V+MTGPA VF G +
Sbjct: 230 VAAAITGRTGRAVTVHLIAGQLEIRWAEDDT-VFMTGPAAKVFQGDI 275
>gi|315646169|ref|ZP_07899289.1| diaminopimelate epimerase [Paenibacillus vortex V453]
gi|315278368|gb|EFU41684.1| diaminopimelate epimerase [Paenibacillus vortex V453]
Length = 278
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/290 (47%), Positives = 184/290 (63%), Gaps = 17/290 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HGLGNDF++V P E+A KLC R FGIGADG+++ +P D+ M
Sbjct: 1 MEFTKMHGLGNDFVVVYGEQEL-PNDASERAVKLCHRFFGIGADGLVYILPS-RKADFMM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT-GAGL--IVPEIQDD--GKV 193
RI NSDGSE E CGN +RC A+++ + ++N ++ T+ T GAG+ + +QD V
Sbjct: 59 RIMNSDGSEAEQCGNAIRCVAKYVYDHGHIN-REEITIETIGAGVQQVRLTVQDGQVSSV 117
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+VDMGEP+L VPT++ N VV ++VDG ++ T VSMGNPHCV + + N
Sbjct: 118 RVDMGEPVLNGLSVPTTIDLNP---VVDHPVEVDGREFRFTAVSMGNPHCVIY-VDDAVN 173
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+L GPK E H +FP + N EF + S Q+ MRVWERGAG TLACGTGACA
Sbjct: 174 F-----DLGTWGPKLEVHPLFPRKINVEFATVNSRDQVDMRVWERGAGPTLACGTGACAT 228
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+V++VL G +R T+ L GG L IEW E DNHVYMTGPAE+V+ G++ +
Sbjct: 229 LVSSVLNGSTDRSATISLKGGDLFIEWDENDNHVYMTGPAELVYKGTLAI 278
>gi|345888052|ref|ZP_08839176.1| diaminopimelate epimerase [Bilophila sp. 4_1_30]
gi|345041142|gb|EGW45333.1| diaminopimelate epimerase [Bilophila sp. 4_1_30]
Length = 280
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 138/291 (47%), Positives = 180/291 (61%), Gaps = 19/291 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAK-LCDRNFGIGADGVIFAMPGVN--GTD 135
+ F K GND++ +D + P +PE A+ + DR+FG+G+DG+I P + D
Sbjct: 1 MRFTKMQAAGNDYVYMDTLKA--PISSPEALARRISDRHFGVGSDGLILICPPSDPGAAD 58
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG---- 191
+ MR+FN+DGSE EMCGNG+RC +++ + + + K+ + T AG++ + G
Sbjct: 59 FRMRMFNADGSEAEMCGNGIRCVGKYVYDNGHTD-KEQVRIETLAGVLTLRLHVSGGKVE 117
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
V VDMGEP L D+P S + + L V G WNVT VSMGNPH V F
Sbjct: 118 AVTVDMGEPRLAPKDIPVS---GPGEDFINRPLRVQGRVWNVTAVSMGNPHAVVF----- 169
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+D L+L+ IGP+FEHH +FP RTNTEFVE++ LKMRVWERGAG TLACGTGAC
Sbjct: 170 -MHGIDNLDLSGIGPQFEHHPLFPRRTNTEFVEVVDRHHLKMRVWERGAGETLACGTGAC 228
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
A VVAAVL G+ ER+ + L GG LDIEW E NHV+MTG A VF G L
Sbjct: 229 ASVVAAVLTGNTERKVRMKLLGGELDIEWDEATNHVFMTGGAVTVFTGEWL 279
>gi|220904420|ref|YP_002479732.1| diaminopimelate epimerase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|254767100|sp|B8IZX7.1|DAPF_DESDA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|219868719|gb|ACL49054.1| Diaminopimelate epimerase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 287
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 141/294 (47%), Positives = 181/294 (61%), Gaps = 20/294 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITP--EQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
L F K G+GND++ + N + RI E A K+ DR+FGIG+DG++ +P D
Sbjct: 5 LRFTKMQGIGNDYVYI---NGFQERIDSPGELARKISDRHFGIGSDGLVLILPSAT-ADV 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL-IVPEIQDDGKV-- 193
MR+FN+DGSE EMCGN VRC +++ + + K TV T AG+ IV + + GKV
Sbjct: 61 RMRMFNADGSESEMCGNAVRCVGKYVYD-HGIQVKDVITVETRAGVKIVRLLFEAGKVCG 119
Query: 194 -KVDMGEPILKASDVPTSLSANKD---QSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTK 249
VDMGEP L + +P + D Q V +DV+G + +T VSMGNPH V F
Sbjct: 120 ATVDMGEPELHPARIPVLTETSGDGSQQRFVARPVDVNGQLYEITAVSMGNPHAVIFMKG 179
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
+D L+L IGP+FEHH +FP RTNTEF E+IS ++++MRVWERGAG TLACGTG
Sbjct: 180 ------IDDLDLPRIGPRFEHHPLFPKRTNTEFAEVISSTKVRMRVWERGAGETLACGTG 233
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
ACAV VA VL G+A R V+L GG L I W E NHVYMTG A VF G +
Sbjct: 234 ACAVAVACVLNGYAGRDVEVELKGGSLHIHWDEASNHVYMTGGAVTVFSGEYYI 287
>gi|317486309|ref|ZP_07945141.1| diaminopimelate epimerase [Bilophila wadsworthia 3_1_6]
gi|316922479|gb|EFV43733.1| diaminopimelate epimerase [Bilophila wadsworthia 3_1_6]
Length = 280
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 138/291 (47%), Positives = 181/291 (62%), Gaps = 19/291 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAK-LCDRNFGIGADGVIFAMPGVN--GTD 135
+ F K GND++ +D + P +PE A+ + DR+FG+G+DG+I P + D
Sbjct: 1 MRFTKMQAAGNDYVYMDTLKA--PISSPEALARRISDRHFGVGSDGLILICPPSDPGEAD 58
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK--- 192
+ MR+FN+DGSE EMCGNG+RC +++ + + + K+ + T AG++ + G+
Sbjct: 59 FRMRMFNADGSEAEMCGNGIRCVGKYVYDNGHTD-KEQVRIETLAGVLTLRLHVSGEKVE 117
Query: 193 -VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
V VDMGEP L D+P S + + L V G WNVT VSMGNPH V F
Sbjct: 118 TVTVDMGEPRLAPKDIPVS---GPGEDFINRPLRVQGRVWNVTAVSMGNPHAVVF----- 169
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+D L+L+ IGP+FEHH +FP RTNTEFVE++ LKMRVWERGAG TLACGTGAC
Sbjct: 170 -MHGIDNLDLSGIGPQFEHHPLFPRRTNTEFVEVVGRHHLKMRVWERGAGETLACGTGAC 228
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
A VVAAVL G+ ER+ + L GG LDIEW E NHV+MTG A VF G L
Sbjct: 229 ASVVAAVLTGNTERKVRMKLLGGELDIEWDEATNHVFMTGGAVTVFTGEWL 279
>gi|304404135|ref|ZP_07385797.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9]
gi|304347113|gb|EFM12945.1| diaminopimelate epimerase [Paenibacillus curdlanolyticus YK9]
Length = 276
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 141/289 (48%), Positives = 180/289 (62%), Gaps = 21/289 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HGLGNDFI+ P + A LC+R FGIGADG+++ +P N D+ M
Sbjct: 1 MEFTKMHGLGNDFIVFAGHQQL-PENVSQLAIDLCNRFFGIGADGLVYILPSENA-DFKM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT-GAGLIVPEIQ---DDGKV- 193
RI NSDGSE E CGN +RC A+++ + L T+ T GAG V ++Q DGKV
Sbjct: 59 RIINSDGSEAEQCGNAIRCVAKYVYD-NGLTTNTDITIETIGAG--VQQVQLNVKDGKVA 115
Query: 194 --KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
+VDMGEPIL+ VPT++ A++ V+ ++VDG +++ T VSMGNPHCV + +
Sbjct: 116 TVRVDMGEPILEGLKVPTTVDADR---VIAHAIEVDGREFSFTAVSMGNPHCVIY-VDDA 171
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
N +L GPK E H +FP + N EFV + S S MRVWERGAG TLACGTGAC
Sbjct: 172 ANF-----DLLTWGPKLETHPMFPRKINVEFVTVNSRSHTDMRVWERGAGPTLACGTGAC 226
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
A VV++VL G +R TV L GG L IEW E DNHVYMTGPA F G+
Sbjct: 227 ATVVSSVLNGFTDRTATVSLKGGDLQIEWSEADNHVYMTGPAAEAFRGT 275
>gi|169831756|ref|YP_001717738.1| diaminopimelate epimerase [Candidatus Desulforudis audaxviator
MP104C]
gi|229807496|sp|B1I545.1|DAPF_DESAP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|169638600|gb|ACA60106.1| Diaminopimelate epimerase [Candidatus Desulforudis audaxviator
MP104C]
Length = 278
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 139/285 (48%), Positives = 169/285 (59%), Gaps = 14/285 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HGLGNDF++V+ + P A ++CDR G+GADG++ +P D M
Sbjct: 1 MEFTKMHGLGNDFVIVNGFGQSLPDDPGALARRVCDRRLGVGADGLVLLLPSA-AADLRM 59
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---VKV 195
R+FN DGSEPEMCGN +RC A + A L K V T AGLI PEI DG V+V
Sbjct: 60 RVFNPDGSEPEMCGNAIRCVALY-ARRRGLVAKTQLEVETLAGLIRPEILLDGDRETVRV 118
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
DMG P L+ +++P A VV LD + VT VSMGNPHCV FG
Sbjct: 119 DMGRPRLERAEIPMRGPAG---PVVGEVLDAGERSFMVTAVSMGNPHCVVFGAD------ 169
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+D + GP E H FPARTN EFVE++SP ++ +RVWERG G T ACGTGACAV V
Sbjct: 170 LDDAGFRKYGPLLEVHPAFPARTNVEFVEVLSPGEVAVRVWERGVGPTPACGTGACAVAV 229
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
A VL G RR V LPGG L IEW ++ VYM+GPAE VF G
Sbjct: 230 AGVLTGRTARRVHVRLPGGVLLIEWPDDAGPVYMSGPAEEVFDGK 274
>gi|308069686|ref|YP_003871291.1| diaminopimelate epimerase [Paenibacillus polymyxa E681]
gi|305858965|gb|ADM70753.1| Diaminopimelate epimerase 2 (DAP epimerase 2) [Paenibacillus
polymyxa E681]
Length = 277
Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 131/288 (45%), Positives = 179/288 (62%), Gaps = 15/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K +GLGNDFI+ P E A +LCDR+FG+GADG+++ +P D+ M
Sbjct: 1 MEFTKMNGLGNDFIVWFGHQDL-PSGASELAVRLCDRHFGVGADGLVYILPS-EKADFCM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KVK 194
RI NSDGSE E CGN +RC A+++ + +++N +Q GAG+ E+ + +VK
Sbjct: 59 RIINSDGSEAEQCGNAIRCAAKYVYDRKHINREQITIETLGAGVQQVELTVENGLVRRVK 118
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMGEPIL+ +PT+L + V+ ++ G + T VSMGNPHCV +
Sbjct: 119 VDMGEPILEGLKIPTTLERTR---VINEPIEAGGSGFCFTAVSMGNPHCVIYVED----- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+L GPK E H +FP +TN EF + S + MRVWERGAG TLACGTGACA +
Sbjct: 171 -APSFDLEAWGPKLECHPLFPKKTNVEFATVRSRKHIDMRVWERGAGPTLACGTGACATL 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VA+VL G+++R V L GG LDIEW E+DNH+YMTGPAE+V+ G +
Sbjct: 230 VASVLNGYSDRHAIVSLKGGDLDIEWSEDDNHIYMTGPAEIVYEGRLF 277
>gi|320529829|ref|ZP_08030906.1| diaminopimelate epimerase [Selenomonas artemidis F0399]
gi|320137847|gb|EFW29752.1| diaminopimelate epimerase [Selenomonas artemidis F0399]
Length = 287
Score = 257 bits (656), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 134/293 (45%), Positives = 186/293 (63%), Gaps = 16/293 (5%)
Query: 71 LDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPG 130
++ R+ + F K+ G GNDF++VD + EP A ++CDR+FGIGADG++ +P
Sbjct: 1 MNGRQGKTMEFTKWQGCGNDFVVVDFLDR-EPVDFAALAVRMCDRHFGIGADGLMVVLPS 59
Query: 131 VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-D 189
D MR FN DG+EPEMCGNG+RCFAR++ E + K+ FT+ T AG++ P I +
Sbjct: 60 -ETADIRMREFNPDGTEPEMCGNGIRCFARYLYEYGRIE-KEQFTIETLAGIMTPRILIE 117
Query: 190 DGKV---KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTF 246
DGKV +VDMG P+L D+P + + V+ + V G ++ +TCVSMGNPH V F
Sbjct: 118 DGKVTAVEVDMGVPVLTGDDIP--VRGFGTERVIAVPITVAGEEYKMTCVSMGNPHAVIF 175
Query: 247 GTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLAC 306
+ LAE+G +FE+H +FP + NTEFVE+ S +MRVWERGAG TLAC
Sbjct: 176 VDD------AEHFPLAELGAQFENHELFPRKINTEFVEVKDRSHARMRVWERGAGITLAC 229
Query: 307 GTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
GTG CA + A VL G +R +++ GG + +EW+ ED H++MTGPAE VF G
Sbjct: 230 GTGTCATLTAGVLTGVLDRAADIEVDGGVIRVEWR-EDGHIFMTGPAEPVFTG 281
>gi|374297522|ref|YP_005047713.1| diaminopimelate epimerase [Clostridium clariflavum DSM 19732]
gi|359827016|gb|AEV69789.1| diaminopimelate epimerase [Clostridium clariflavum DSM 19732]
Length = 277
Score = 256 bits (655), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 136/288 (47%), Positives = 186/288 (64%), Gaps = 18/288 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAK-LCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K GLGND+I V+ TE P + AK L DR+FGIG+DG++ MP D+
Sbjct: 1 MKFTKMQGLGNDYIYVNC--FTEKVADPSKMAKILSDRHFGIGSDGLVLIMPS-ETCDFK 57
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV--- 193
MR+FNSDGSE EMCGN +RC +++ + L K + T AG+ + +++ ++GKV
Sbjct: 58 MRMFNSDGSEAEMCGNAIRCVGKYVYD-NGLTQKTVIKIETLAGIKILDMKVENGKVAMV 116
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+VDMGEP+L+ + +P ++++ + + +DG ++ VTCVSMGNPH VT+
Sbjct: 117 RVDMGEPVLQPALIPVK---SEEELFISQPVLIDGKEFKVTCVSMGNPHAVTYVED---- 169
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+DK L IGPK E+ S+FP R N EFV+++ LKMRVWERGAG TLACGTGACA
Sbjct: 170 --IDKFPLDIIGPKMENDSLFPKRINAEFVQVLDSKTLKMRVWERGAGETLACGTGACAT 227
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+V++VL G ++R V L GG L IEW E DNHVYMTGPA VF G +
Sbjct: 228 LVSSVLNGVSDRCAVVKLLGGDLIIEWNENDNHVYMTGPATKVFDGEI 275
>gi|345861286|ref|ZP_08813553.1| diaminopimelate epimerase [Desulfosporosinus sp. OT]
gi|344325641|gb|EGW37152.1| diaminopimelate epimerase [Desulfosporosinus sp. OT]
Length = 278
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 141/288 (48%), Positives = 176/288 (61%), Gaps = 16/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ FVK HGLGNDF+ +D+ + E A KLC R FGIG DG++ +P D M
Sbjct: 1 MEFVKMHGLGNDFVFLDHFSVVSDVDYSELAIKLCHRQFGIGGDGLVVILPS-EVADARM 59
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV---K 194
RI NSDGSEPEMCGNG+RCFAR++ + + + V T AG++ ++ DG+V +
Sbjct: 60 RIINSDGSEPEMCGNGIRCFARYVYD-QGIVKHNPMRVETLAGVLTLKLNIQDGQVHGVQ 118
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMGEPIL+A +P + + VV L+V G + T VSMGNPHC+ F
Sbjct: 119 VDMGEPILRADLIPV---LSPGEPVVGQSLEVLGETFQYTAVSMGNPHCLIFVDD----- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
L+ +GP E H +FP +TN EF+ I S ++ M+VWERGAG TLACGTGACA V
Sbjct: 171 -FSTLDFERVGPAIEKHPLFPRKTNVEFILINSSQEMIMKVWERGAGPTLACGTGACASV 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VAAVL ER TV LPGG L IEW DNHVYMTGPA VF G L
Sbjct: 230 VAAVLNNKTERAVTVHLPGGDLFIEWG-ADNHVYMTGPATYVFKGEWL 276
>gi|366164256|ref|ZP_09464011.1| diaminopimelate epimerase [Acetivibrio cellulolyticus CD2]
Length = 277
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/288 (48%), Positives = 185/288 (64%), Gaps = 18/288 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLC-DRNFGIGADGVIFAMPGVNGTDYT 137
+ F K GLGND+I V+ TE P + AK DR+FG+G+DG++ MP D+
Sbjct: 1 MKFTKMQGLGNDYIYVNC--FTEKVDNPSEVAKFVSDRHFGVGSDGLVLIMPS-QMCDFR 57
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV--- 193
MR+FNSDGSE EMCGN +RC +F+ + + K V T AG+ V ++ D KV
Sbjct: 58 MRMFNSDGSEAEMCGNAIRCVGKFVYD-NGMTQKSVIKVETLAGIKVLDMTVKDNKVELV 116
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
KVDMGEPIL+ + +P + +NK + V + +DG ++ VTCVSMGNPH VT+
Sbjct: 117 KVDMGEPILEPAKIP--VDSNK-ELFVSQPVVIDGREFKVTCVSMGNPHAVTYVDD---- 169
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V+K L +GPK E++S++P R N EFV++I LKMRVWERGAG TLACGTGACAV
Sbjct: 170 --VEKFPLEVVGPKMENNSLYPKRINAEFVQVIDRDTLKMRVWERGAGETLACGTGACAV 227
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+V++VL + R+ V L GG L IEW E+DNHVYMTGPA VF G +
Sbjct: 228 LVSSVLNDISNRKVVVKLLGGDLIIEWNEKDNHVYMTGPATKVFDGDI 275
>gi|329926558|ref|ZP_08280971.1| diaminopimelate epimerase [Paenibacillus sp. HGF5]
gi|328939099|gb|EGG35462.1| diaminopimelate epimerase [Paenibacillus sp. HGF5]
Length = 286
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 138/298 (46%), Positives = 185/298 (62%), Gaps = 17/298 (5%)
Query: 71 LDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPG 130
+ RR + F K HGLGNDF++V P E A KLC+R FGIGADG+++ +P
Sbjct: 1 MQRRWVLMMEFTKMHGLGNDFVVVYGEREL-PSDASELAVKLCNRFFGIGADGLVYILPS 59
Query: 131 VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT-GAGL--IVPEI 187
D+ MRI NSDGSE E CGN +RC A+++ + +++ ++ T+ T GAG+ + +
Sbjct: 60 AK-ADFMMRIMNSDGSEAEQCGNAIRCVAKYVYDHGHID-REEITIETIGAGVQQVRLTV 117
Query: 188 QDD--GKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVT 245
QD V+VDMGEP+L VPT + N VV ++V+G ++ T VSMGNPHCV
Sbjct: 118 QDGQVSSVRVDMGEPVLNGLSVPTLVDLN---PVVNHPVEVEGREFRFTAVSMGNPHCVI 174
Query: 246 FGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLA 305
+ + N +L GPK E H +FP + N EF + S Q+ MRVWERGAG TLA
Sbjct: 175 Y-VDDAVNF-----DLGVWGPKLEVHPLFPRKINVEFATVNSRGQVDMRVWERGAGPTLA 228
Query: 306 CGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
CGTGACA +V++VL G +R T+ L GG L IEW E DNHVYMTGPAEVV+ G + +
Sbjct: 229 CGTGACATLVSSVLNGATDRSATISLKGGDLFIEWDELDNHVYMTGPAEVVYKGKLAI 286
>gi|313895012|ref|ZP_07828569.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312975907|gb|EFR41365.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 279
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 132/285 (46%), Positives = 182/285 (63%), Gaps = 16/285 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K+ G GNDF++VD + EP A ++CDR+FG+GADG++ +P D M
Sbjct: 1 MEFTKWQGCGNDFVVVDFL-AREPVDFAALAVRMCDRHFGVGADGLMVVLPS-ETADIRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV---K 194
R FN DG+EPEMCGNG+RCFAR++ E + K+ FT+ T AG++ P I +DGKV +
Sbjct: 59 REFNPDGTEPEMCGNGIRCFARYLYEYGRIK-KEQFTIETLAGIMTPRILIEDGKVTAVE 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG P+L D+P + + V+ + + V G + +TCVSMGNPH V F
Sbjct: 118 VDMGVPVLTGDDIP--VRGFGTERVIAAPITVAGRTYKMTCVSMGNPHAVIFVDD----- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ LAE+G +FE+H +FP + NTEFVE+ S +MRVWERGAG TLACGTG CA +
Sbjct: 171 -AEHFPLAELGAQFENHELFPRKINTEFVEVKDRSHARMRVWERGAGITLACGTGTCATL 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
A VL G +R +++ GG + +EW+ ED H++MTGPAE VF G
Sbjct: 230 TAGVLTGVLDRAADIEVDGGVIRVEWR-EDGHIFMTGPAEPVFTG 273
>gi|337750149|ref|YP_004644311.1| protein DapF [Paenibacillus mucilaginosus KNP414]
gi|336301338|gb|AEI44441.1| DapF [Paenibacillus mucilaginosus KNP414]
Length = 281
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 142/290 (48%), Positives = 177/290 (61%), Gaps = 23/290 (7%)
Query: 80 HFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMR 139
+F K GLGNDFI++ + P A +LCDR+FG+GADG++F +P DYTMR
Sbjct: 5 NFTKMQGLGNDFIVLHGHDRL-PEDAGALALRLCDRHFGVGADGLVFVLPSER-ADYTMR 62
Query: 140 IFNSDGSEPEMCGNGVRCFARFIAELENL-NGKQSFTVHTGAGLIVPEIQ--DDGKV--- 193
I NSDG+E E CGN +RC A++I + + G+ T+ T + P + ++G+V
Sbjct: 63 IINSDGTEAEQCGNAIRCAAKYIHDKGLVEQGRSHLTIETIGAGVQPVVLTFEEGRVTAV 122
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+VDMGEP+L VPT++ A K +V+ L VDG + T VSMGNPHCV F
Sbjct: 123 RVDMGEPVLGGLAVPTTIDAEK---IVEYPLTVDGRELRFTAVSMGNPHCVIF------- 172
Query: 254 LKVDKL---NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
VD +L GPK E H +FP RTN EFV + S MRVWERGAG TLACGTGA
Sbjct: 173 --VDDAPGEDLYAWGPKLETHELFPRRTNVEFVTVRSRGHADMRVWERGAGPTLACGTGA 230
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
CA +VA VL G +R V L GG L IEW EEDN VYMTGPAE VF GS
Sbjct: 231 CATLVAGVLTGVLDREAAVSLKGGDLLIEWNEEDNRVYMTGPAEFVFEGS 280
>gi|323702031|ref|ZP_08113699.1| diaminopimelate epimerase [Desulfotomaculum nigrificans DSM 574]
gi|333923465|ref|YP_004497045.1| diaminopimelate epimerase [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323532913|gb|EGB22784.1| diaminopimelate epimerase [Desulfotomaculum nigrificans DSM 574]
gi|333749026|gb|AEF94133.1| Diaminopimelate epimerase [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 281
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 143/291 (49%), Positives = 184/291 (63%), Gaps = 19/291 (6%)
Query: 79 LHFVKYHGLGNDFILVD-NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAM-PGVNGTDY 136
+HF K HGLGNDFILV+ P A K+CDR FGIGADG++ + GV D
Sbjct: 1 MHFTKVHGLGNDFILVNAGMGEGLPDDYITLAPKMCDRRFGIGADGLVLLLDSGV--ADV 58
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-QDDGKV-- 193
MRI NSDGSE EMCGN +RC A+++ E + K V T AG+IVP+I Q +G+V
Sbjct: 59 RMRIINSDGSEAEMCGNAIRCVAKYLYE-HGIVRKDEIKVETLAGIIVPQIIQKNGRVEA 117
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
+VDMG P L+ ++P + + VV L V+G + +T VSMGNPHCV F
Sbjct: 118 VRVDMGAPRLERQEIPMLGTPGQ---VVNEPLQVNGQTFKITAVSMGNPHCVIFVP---- 170
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
+L V LN +IGP+ E H FP +TN EFV+++SP++++M VWERGAG T+ACGTGACA
Sbjct: 171 DLSVIPLN--QIGPQIETHPAFPRKTNVEFVQVLSPTEVRMMVWERGAGPTMACGTGACA 228
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V A VL G R TV LPGG L IEW ++ +YMTGPAE VF G ++
Sbjct: 229 VATAGVLNGLTARSVTVHLPGGSLHIEWA-DNGRLYMTGPAEEVFNGEYIV 278
>gi|261405790|ref|YP_003242031.1| diaminopimelate epimerase [Paenibacillus sp. Y412MC10]
gi|261282253|gb|ACX64224.1| diaminopimelate epimerase [Paenibacillus sp. Y412MC10]
Length = 279
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 137/291 (47%), Positives = 182/291 (62%), Gaps = 17/291 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K HGLGNDF++V P E A KLC+R FGIGADG+++ +P D+
Sbjct: 1 MMEFTKMHGLGNDFVVVYGEREL-PSDASELAVKLCNRFFGIGADGLVYILPSAK-ADFM 58
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT-GAGL--IVPEIQDD--GK 192
MRI NSDGSE E CGN +RC A+++ + +++ ++ T+ T GAG+ + +QD
Sbjct: 59 MRIMNSDGSEAEQCGNAIRCVAKYVYDHGHID-REEITIETIGAGVQQVRLTVQDGQVSS 117
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V+VDMGEP+L VPT + N VV ++VDG ++ T VSMGNPHCV + +
Sbjct: 118 VRVDMGEPVLNGLSVPTLVDLNP---VVNHPVEVDGREFRFTAVSMGNPHCVIY-VDDAV 173
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
N +L GPK E H +FP + N EF + S Q+ MRVWERGAG TLACGTGACA
Sbjct: 174 NF-----DLGVWGPKLEVHPLFPRKINVEFATVNSRGQVDMRVWERGAGPTLACGTGACA 228
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+V++VL G +R T+ L GG L IEW E DNHVYMTGPAEVV+ G + +
Sbjct: 229 TLVSSVLNGATDRSATISLKGGDLFIEWDELDNHVYMTGPAEVVYKGKLAI 279
>gi|78184680|ref|YP_377115.1| diaminopimelate epimerase [Synechococcus sp. CC9902]
gi|78168974|gb|ABB26071.1| diaminopimelate epimerase [Synechococcus sp. CC9902]
Length = 355
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 176/290 (60%), Gaps = 16/290 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNS------TEPRITPEQAAKLCDRNFGIGADGVIFAMPGV 131
L F KY GLGNDF++++ R EP P ++CDR FG+G DGVI A+P
Sbjct: 1 MLQFSKYQGLGNDFLILEGRQGQLDFAVAEP--DPNWVRRICDRRFGVGGDGVILALPPQ 58
Query: 132 NGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG 191
D MRIFN+DG+E EMCGNG+RC AR++A+ + + + T AG+I PE+ +G
Sbjct: 59 ADGDLRMRIFNADGTEAEMCGNGIRCLARYLADTDGEAPGCRWAIETPAGMIRPELMTNG 118
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
+++VDMG P L+++ +PT+L + + L++DGV NV V MGNPH V
Sbjct: 119 QLRVDMGAPFLESASIPTTLEPLA--GLPRGALEIDGVPLNVASVGMGNPHVVV------ 170
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+ ++ G E H VFPA+TN F+++ + +L++RVWERGAG TLACGTGAC
Sbjct: 171 PVEDLSRIPFEVWGAALEVHPVFPAKTNVHFLKVHARDRLEIRVWERGAGPTLACGTGAC 230
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
A +VAAVL A+ + V LPGGPL I W V MTGPAE VF G +
Sbjct: 231 ATLVAAVLLDLADEQAEVMLPGGPLLISWPGRSGSVLMTGPAEAVFDGVI 280
>gi|33865788|ref|NP_897347.1| diaminopimelate epimerase [Synechococcus sp. WH 8102]
gi|33632958|emb|CAE07769.1| diaminopimelate epimerase [Synechococcus sp. WH 8102]
Length = 364
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 134/289 (46%), Positives = 173/289 (59%), Gaps = 18/289 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRIT----PEQAAKLCDRNFGIGADGVIFAMPGVNG 133
L F KY GLGNDF++++ R P+ P +LCDR FGIG DGVI A+P
Sbjct: 1 MLQFSKYQGLGNDFLILEGRQGQLPQSVVEPDPVWVRQLCDRRFGIGGDGVILALPPQGQ 60
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKV 193
D MRIFN+DGSE EMCGNG+RC ARF+A+ + + + + T AGLI PE+Q DG++
Sbjct: 61 GDLRMRIFNADGSEAEMCGNGIRCLARFLADSDGDAPGKRWAIETPAGLIRPELQSDGQL 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+VDMG P L+ S +PT+L + + D+ V V MGNPH V
Sbjct: 121 RVDMGAPFLEPSSIPTTLPLVD--GLARGSADLADRALEVAAVGMGNPHVV--------- 169
Query: 254 LKVDKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
+ V+ LN G E H +FPA+TN F+++ + ++L++RVWERGAG TLACGTGA
Sbjct: 170 VPVEDLNAIPFDAWGAALEVHHLFPAKTNVHFLQVHARNRLEIRVWERGAGPTLACGTGA 229
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
CA +VAAVL G A+ V LPGGPL I W V MTGPA VF G
Sbjct: 230 CATLVAAVLLGLADDHAEVMLPGGPLQIAWPGRHGAVLMTGPAVAVFDG 278
>gi|194476635|ref|YP_002048814.1| Diaminopimelate epimerase [Paulinella chromatophora]
gi|171191642|gb|ACB42604.1| Diaminopimelate epimerase [Paulinella chromatophora]
Length = 376
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 118/286 (41%), Positives = 177/286 (61%), Gaps = 11/286 (3%)
Query: 78 FLHFVKYHGLGNDFILVDNR----NSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNG 133
L F KYHGLGNDF+++D R N PE LCDR+FG+GADGVI +
Sbjct: 1 MLQFSKYHGLGNDFLIIDGRSWPANFMFANPDPEWVRHLCDRHFGVGADGVIIILSPTLE 60
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKV 193
D+ MRIFN+DG+E +MCGNG+RC ++F+A+ + + + + T AG+IV E++++ +
Sbjct: 61 GDWRMRIFNADGTEAQMCGNGIRCISKFLADSDKVMVGHKWKIETLAGIIVSELKENDMI 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG PIL D+PT LS +D ++ ++ +G+ W+V MGNPH + K+ ++
Sbjct: 121 YVDMGIPILSPHDIPTRLSVGQD-NIAIGLIETNGITWSVAAAGMGNPH-IVIPVKDAED 178
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ ++K GP E H FP +TN F+++I + LK+R WERG G T ACGTGACA
Sbjct: 179 IDIEKF-----GPLLEEHFAFPTQTNVHFLQVIEHNHLKLRTWERGVGVTFACGTGACAA 233
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
++ A G +++ +DLPGG L + W+ DNH+ + G A+ +F G
Sbjct: 234 LIVAHSLGLSDKEAQIDLPGGSLLVNWETIDNHISIIGSAKAIFDG 279
>gi|167755626|ref|ZP_02427753.1| hypothetical protein CLORAM_01141 [Clostridium ramosum DSM 1402]
gi|167704565|gb|EDS19144.1| diaminopimelate epimerase [Clostridium ramosum DSM 1402]
Length = 283
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 133/295 (45%), Positives = 188/295 (63%), Gaps = 18/295 (6%)
Query: 71 LDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPG 130
+ RR LHF K G+GND+I D N P + E K+ DR+FGIG+DG+I +P
Sbjct: 1 MKRRGIMQLHFTKMEGIGNDYIYFDGINQEIP-MDKEFIMKISDRHFGIGSDGMIVILPS 59
Query: 131 VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDD 190
+ D+ MR+FN DGSE MCGNG+RCFA+FI + L+ K + T +GL E+ D
Sbjct: 60 -DQYDFKMRMFNLDGSEAMMCGNGIRCFAKFIYD-HKLSDKHVLKIETKSGLRTVELLFD 117
Query: 191 GK----VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTF 246
G KV+MG+P+L D+P + + K ++ +++ G ++ +T +SMGNPH VTF
Sbjct: 118 GDECIGAKVNMGKPVLTCQDIPCTYAKEK---MIDEPVEIGGREYRLTTISMGNPHTVTF 174
Query: 247 GTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLAC 306
+ +D L+L IGPKFEHH +FPA NTEFV+II+ S +KMRVWERG+G T+AC
Sbjct: 175 VSD------LDTLDLKTIGPKFEHHQLFPASVNTEFVQIINKSYVKMRVWERGSGETMAC 228
Query: 307 GTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
GTGACAV+ A L + + + TV+L GG L+IE+ +E + M+GPA VF G++
Sbjct: 229 GTGACAVMYACYLNHYTDSKVTVELLGGCLEIEYVDET--IMMSGPAANVFNGTI 281
>gi|251797753|ref|YP_003012484.1| diaminopimelate epimerase [Paenibacillus sp. JDR-2]
gi|247545379|gb|ACT02398.1| diaminopimelate epimerase [Paenibacillus sp. JDR-2]
Length = 278
Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 138/288 (47%), Positives = 178/288 (61%), Gaps = 17/288 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K HGLGNDFI++ P E A C+R FGIGADG+++ +P D+
Sbjct: 1 MMKFTKMHGLGNDFIVIAGEQQL-PGNVAELAKNQCNRFFGIGADGLVYILPS-EVADFR 58
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT-GAGLIVPEIQ-DDGKV-- 193
MRI NSDGSE E CGN +RC A++I + L K+ T+ T GAG +++ DGKV
Sbjct: 59 MRIINSDGSEAEQCGNAIRCAAKYIYD-NGLTDKEELTIETLGAGAQTVQLEVADGKVQQ 117
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
+VDMG PIL VPT++ ++ V++ ++VDG ++ T VSMGNPHCV + +
Sbjct: 118 VRVDMGAPILNGLQVPTTVDEDR---VIEHPIEVDGREFRFTAVSMGNPHCVIY-VDDAA 173
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
N +LA GPK E H +FP + N EFV +IS +MRVWERGAG TLACGTGACA
Sbjct: 174 NF-----DLATWGPKLETHPMFPRKINVEFVTVISREHAEMRVWERGAGPTLACGTGACA 228
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
VV++VL G +R V L GG L IEW E DNHVYMTGPA V+ G
Sbjct: 229 TVVSSVLNGLTDRTAVVTLKGGDLTIEWNEADNHVYMTGPAAEVYRGE 276
>gi|365831246|ref|ZP_09372798.1| diaminopimelate epimerase [Coprobacillus sp. 3_3_56FAA]
gi|374624919|ref|ZP_09697336.1| diaminopimelate epimerase [Coprobacillus sp. 8_2_54BFAA]
gi|365261723|gb|EHM91624.1| diaminopimelate epimerase [Coprobacillus sp. 3_3_56FAA]
gi|373916202|gb|EHQ47950.1| diaminopimelate epimerase [Coprobacillus sp. 8_2_54BFAA]
Length = 277
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 131/287 (45%), Positives = 185/287 (64%), Gaps = 18/287 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
LHF K G+GND+I D N P + E K+ DR+FGIG+DG+I +P + D+ M
Sbjct: 3 LHFTKMEGIGNDYIYFDGINQEIP-MDKEFIMKISDRHFGIGSDGMIVILPS-DQYDFKM 60
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK----VK 194
R+FN DGSE MCGNG+RCFA+FI + L+ K + T +GL E+ DG K
Sbjct: 61 RMFNLDGSEAMMCGNGIRCFAKFIYD-HKLSDKHVLKIETKSGLRTVELLFDGDECIGAK 119
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
V+MG+P+L D+P + + K ++ +++ G ++ +T +SMGNPH VTF +
Sbjct: 120 VNMGKPVLTCQDIPCTYAKEK---MIDEPVEIGGREYRLTTISMGNPHTVTFVSD----- 171
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+D L+L IGPKFEHH +FPA NTEFV+II+ S +KMRVWERG+G T+ACGTGACAV+
Sbjct: 172 -LDTLDLKTIGPKFEHHQLFPASVNTEFVQIINKSYVKMRVWERGSGETMACGTGACAVM 230
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
A L + + + TV+L GG L+IE+ +E + M+GPA VF G++
Sbjct: 231 YACYLNHYTDSKVTVELLGGCLEIEYVDET--IMMSGPAANVFNGTI 275
>gi|237734373|ref|ZP_04564854.1| diaminopimelate epimerase [Mollicutes bacterium D7]
gi|229382603|gb|EEO32694.1| diaminopimelate epimerase [Coprobacillus sp. D7]
Length = 277
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 131/287 (45%), Positives = 185/287 (64%), Gaps = 18/287 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
LHF K G+GND+I D N P + E K+ DR+FGIG+DG+I +P + D+ M
Sbjct: 3 LHFTKMEGIGNDYIYFDGINQEIP-MDKEFIMKISDRHFGIGSDGMIVILPS-DQYDFKM 60
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK----VK 194
R+FN DGSE MCGNG+RCFA+FI + L+ K + T +GL E+ DG K
Sbjct: 61 RMFNLDGSEAMMCGNGIRCFAKFIYD-HKLSDKHVLKIETKSGLRTVELLFDGDECIGAK 119
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
V+MG+P+L D+P + + K ++ +++ G ++ +T +SMGNPH VTF +
Sbjct: 120 VNMGKPVLTCQDIPCTYAKEK---MIDEPVEIGGREYRLTTISMGNPHTVTFVSD----- 171
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+D L+L IGPKFEHH +FPA NTEFV+II+ S +KMRVWERG+G T+ACGTGACAV+
Sbjct: 172 -LDTLDLKTIGPKFEHHQLFPASVNTEFVQIINKSYVKMRVWERGSGETMACGTGACAVM 230
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
A L + + + TV+L GG L+IE+ +E + M+GPA VF G++
Sbjct: 231 YACYLNHYTDSKVTVELLGGCLEIEYVDET--IMMSGPAANVFNGTI 275
>gi|313203570|ref|YP_004042227.1| diaminopimelate epimerase [Paludibacter propionicigenes WB4]
gi|312442886|gb|ADQ79242.1| diaminopimelate epimerase [Paludibacter propionicigenes WB4]
Length = 272
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 135/285 (47%), Positives = 186/285 (65%), Gaps = 22/285 (7%)
Query: 85 HGLGNDFILVDNRNSTEPRITPEQAAKLC--DRNFGIGADGVIFAMPGVNGTDYTMRIFN 142
HG+GND+I V N E I + +C DR+ GIG+DG++ +P + D+ MR+FN
Sbjct: 2 HGIGNDYIYV---NGFEETIDDPVSFAICYSDRHKGIGSDGLVIILPS-DDCDFKMRMFN 57
Query: 143 SDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAG-----LIVPEIQDDGKVKVDM 197
+DGSE EMCGN RC +F+ + + L K T+ T AG L + E + V VDM
Sbjct: 58 ADGSESEMCGNASRCIGKFVYD-KGLTDKTELTLETLAGVKKLKLFLGEDKLVETVTVDM 116
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDG-VKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
GEPI ++ +PT+++ S++ + + +K+N+TCVSMGNPH V F T +
Sbjct: 117 GEPIFESGLIPTTINK---PSIINEPVTFNSEIKYNITCVSMGNPHAVIFTTG------I 167
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
DKL+L +IGP E+ ++FP RTNTEF+E++S ++KMRVWERG+G T+ACGTGACA VVA
Sbjct: 168 DKLDLNKIGPVTENAAIFPRRTNTEFIEVLSTDRIKMRVWERGSGETMACGTGACASVVA 227
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
AVL GH R+ TV+L GG L IEWKE DN VY+TG A VF G++
Sbjct: 228 AVLNGHTGRKTTVELLGGELTIEWKESDNRVYLTGGATTVFEGTI 272
>gi|379722985|ref|YP_005315116.1| protein DapF [Paenibacillus mucilaginosus 3016]
gi|386725770|ref|YP_006192096.1| protein DapF [Paenibacillus mucilaginosus K02]
gi|378571657|gb|AFC31967.1| DapF [Paenibacillus mucilaginosus 3016]
gi|384092895|gb|AFH64331.1| protein DapF [Paenibacillus mucilaginosus K02]
Length = 281
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 141/290 (48%), Positives = 177/290 (61%), Gaps = 23/290 (7%)
Query: 80 HFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMR 139
+F K GLGNDFI++ + P A +LCDR+FG+GADG++F +P DYTMR
Sbjct: 5 NFTKMQGLGNDFIVLHGHDRL-PEDAGALALRLCDRHFGVGADGLVFVLPSER-ADYTMR 62
Query: 140 IFNSDGSEPEMCGNGVRCFARFIAELENL-NGKQSFTVHTGAGLIVPEIQ--DDGKV--- 193
I NSDG+E E CGN +RC A++I + + G+ T+ T + P + ++G+V
Sbjct: 63 IINSDGTEAEQCGNAIRCAAKYIHDKGLVEQGRSHLTIETIGAGVQPVVLTFEEGRVTAV 122
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+VDMGEP+L VPT++ A K +V+ L VDG + T VSMGNPHCV F
Sbjct: 123 RVDMGEPVLGGLAVPTTVDAEK---IVEYPLTVDGRELRFTAVSMGNPHCVIF------- 172
Query: 254 LKVDKL---NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
VD +L GPK E H +FP +TN EFV + S MRVWERGAG TLACGTGA
Sbjct: 173 --VDDAPGEDLYAWGPKLETHELFPRKTNVEFVTVRSRGHADMRVWERGAGPTLACGTGA 230
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
CA +VA VL G +R V L GG L IEW EEDN VYMTGPAE VF GS
Sbjct: 231 CATLVAGVLNGVLDREAAVSLKGGDLLIEWNEEDNRVYMTGPAEFVFEGS 280
>gi|408418344|ref|YP_006759758.1| diaminopimelate epimerase (DAP epimerase) DapF [Desulfobacula
toluolica Tol2]
gi|405105557|emb|CCK79054.1| DapF: diaminopimelate epimerase (DAP epimerase) [Desulfobacula
toluolica Tol2]
Length = 281
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 132/288 (45%), Positives = 179/288 (62%), Gaps = 16/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F+K GLGNDFIL+DNR P+ + KLC R+FGIGADG+I + V D
Sbjct: 3 IEFIKMQGLGNDFILLDNRKGDIRHPYPDLSKKLCSRHFGIGADGMILILKSV-AQDIKF 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDD-----GKV 193
RI+NSDGS+ +MCGNG+RCFA+ + E + L K+ V T AG ++PE+ D V
Sbjct: 62 RIYNSDGSQAQMCGNGMRCFAKILYENKILPQKK-MRVDTKAGTVIPEVITDEAGRVSSV 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+VDMGEP+L D+P + ++ V+ L V + + VSMGNPH V F
Sbjct: 121 RVDMGEPVLFCRDIPFK---SPNEIAVEEFLTVGDKECGIIPVSMGNPHAVMFVDD---- 173
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
++++++ +IG E H FP +TN EFVE+++ +LKM+VWERGAG TLACGTGACA
Sbjct: 174 --LERVDVKKIGRSIETHERFPEKTNVEFVEVVNDKELKMKVWERGAGMTLACGTGACAA 231
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+VAA L G + V L GG LDI+W +E NHV+ TGPA VF G +
Sbjct: 232 LVAANLTGRTSKSAVVHLDGGDLDIQWNKETNHVFKTGPATKVFEGRI 279
>gi|169351070|ref|ZP_02868008.1| hypothetical protein CLOSPI_01849 [Clostridium spiroforme DSM 1552]
gi|169292132|gb|EDS74265.1| diaminopimelate epimerase [Clostridium spiroforme DSM 1552]
Length = 277
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 131/287 (45%), Positives = 187/287 (65%), Gaps = 18/287 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
LHF K GLGND+I VD N + + E K+ DR+FGIG+DG+I +P + D+ M
Sbjct: 3 LHFTKMEGLGNDYIYVDGINQ-DVCMDKEFIKKISDRHFGIGSDGMIVILPS-DKYDFKM 60
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK----VK 194
R+FN DGSE +MCGNG+RCFA+FI + L+ K + T AGL + E+ DG K
Sbjct: 61 RMFNLDGSEGKMCGNGIRCFAKFIYD-HKLSDKHVLEIETKAGLRIVELLFDGDKCIGAK 119
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG+PIL SD+P + + ++++ + +D K+N+T +SMGNPH VTF
Sbjct: 120 VDMGKPILTCSDIPCNYNQ---ETMIDQTIVIDDYKYNLTSISMGNPHTVTFVDD----- 171
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
++ L+L +IGPKFE H +FP NTEFVE+I+ +KMRVWERG+G T+ACGTGACA +
Sbjct: 172 -LETLDLKKIGPKFEFHEMFPEGVNTEFVEVINDHYIKMRVWERGSGETMACGTGACAAM 230
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
A+ L + + + TV+L GG L+IE+ ++ + M+GPA VF G++
Sbjct: 231 YASYLNNYTKNKVTVELLGGCLEIEYI--NDTIMMSGPAVNVFEGTI 275
>gi|346308931|ref|ZP_08851035.1| diaminopimelate epimerase [Dorea formicigenerans 4_6_53AFAA]
gi|345901480|gb|EGX71279.1| diaminopimelate epimerase [Dorea formicigenerans 4_6_53AFAA]
Length = 282
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 135/293 (46%), Positives = 185/293 (63%), Gaps = 19/293 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAAKLC-DRNFGIGADGVIFAMPGVNGTDY 136
+ F K GLGND++ V N + +I P + AK+ DR+FGIG+DG+I P D+
Sbjct: 1 MKFTKMQGLGNDYVYV---NCFKEKIDNPPKVAKIVSDRHFGIGSDGLIMINPS-KVADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
M ++N+DGS EMCGNG+RC A+++ + L K +V T G+ ++ DGKV
Sbjct: 57 EMEMYNADGSRGEMCGNGIRCVAKYVYDY-GLTDKTHISVETLGGIKYLDLTVKDGKVAL 115
Query: 194 -KVDMGEPILKASDVPTSLSANKDQS--VVKSELDVDGVKWNVTCVSMGNPHCVTFGTKE 250
+VDMGEP L +P + D++ V+ +++ VDG ++++T VSMGNPH V +
Sbjct: 116 VRVDMGEPELAPEKIPIIMKGYSDETDRVLNAQIKVDGKEYHMTGVSMGNPHDVVYIDD- 174
Query: 251 GQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
V L++ +IGPKFE+H FP R NTEF +I ++MRVWERG+G TLACGTGA
Sbjct: 175 -----VQGLDIEKIGPKFENHERFPQRINTEFARVIDRKTVEMRVWERGSGETLACGTGA 229
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
CAV VA++L G+ ER + L GG L IEW EEDNHVYMTGPA VVF G + L
Sbjct: 230 CAVAVASILNGYTEREVEIRLLGGNLQIEWNEEDNHVYMTGPATVVFDGEIEL 282
>gi|166030591|ref|ZP_02233420.1| hypothetical protein DORFOR_00254 [Dorea formicigenerans ATCC
27755]
gi|166029593|gb|EDR48350.1| diaminopimelate epimerase [Dorea formicigenerans ATCC 27755]
Length = 288
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 134/293 (45%), Positives = 184/293 (62%), Gaps = 19/293 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K GLGND++ V N + +I PE A + +R+FGIG+DG+I P D+
Sbjct: 7 MKFTKMQGLGNDYVYV---NCFKEKIDNPPEVAKIVSNRHFGIGSDGLIMINPS-KVADF 62
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
M ++N+DGS EMCGNG+RC A+++ + L K +V T G+ ++ DGKV
Sbjct: 63 EMEMYNADGSRGEMCGNGIRCVAKYVYDY-GLTDKTHISVETLGGIKYLDLTVKDGKVAL 121
Query: 194 -KVDMGEPILKASDVPTSLSANKDQS--VVKSELDVDGVKWNVTCVSMGNPHCVTFGTKE 250
+VDMGEP L +P + D++ V+ +++ VDG ++++T VSMGNPH V +
Sbjct: 122 VRVDMGEPELDPEKIPIIMKGYSDETDRVLNAQIKVDGKEYHMTGVSMGNPHDVVYIDN- 180
Query: 251 GQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
V L++ +IGPKFE+H FP R NTEF +I ++MRVWERG+G TLACGTGA
Sbjct: 181 -----VQGLDIEKIGPKFENHERFPQRINTEFARVIDRKTVEMRVWERGSGETLACGTGA 235
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
CAV VA++L G+ ER + L GG L IEW EEDNHVYMTGPA VVF G + L
Sbjct: 236 CAVAVASILNGYTEREVEIRLLGGNLQIEWNEEDNHVYMTGPATVVFDGEIEL 288
>gi|429737049|ref|ZP_19270922.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429153489|gb|EKX96271.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 279
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 134/285 (47%), Positives = 178/285 (62%), Gaps = 16/285 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K+ G GNDF++VD + EP A K+CDR+FGIGADG++ P D M
Sbjct: 1 MEFTKWQGCGNDFVVVDFLDK-EPIDFATLAVKMCDRHFGIGADGLMVVCPS-ETADVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDD--GKVK 194
R FN DG+EPEMCGNG+RCFAR++ + + Q FT+ T AG +VP I QDD V+
Sbjct: 59 REFNPDGTEPEMCGNGIRCFARYLYDYGRMK-TQQFTIETLAGTMVPRIITQDDVVTAVE 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG P+L+ +P + + VV L VDG ++ +TCVSMGNPHCV F
Sbjct: 118 VDMGVPVLEGDKIP--VVGFGAERVVAQPLMVDGTEYKMTCVSMGNPHCVIFVDD----- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ L+E+G +FE+H FP + NTEFVE+ S + +MRVWERGAG TLACGTG CA +
Sbjct: 171 -AEGFPLSELGAQFENHPAFPRKINTEFVEVKSRTHARMRVWERGAGITLACGTGTCATL 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
A VL +R +++ GG + +EW+ D H+ MTGPAE VF G
Sbjct: 230 TAGVLNDVLDRAADIEVDGGIIHVEWR-ADGHILMTGPAEPVFTG 273
>gi|357037622|ref|ZP_09099422.1| Diaminopimelate epimerase [Desulfotomaculum gibsoniae DSM 7213]
gi|355361787|gb|EHG09542.1| Diaminopimelate epimerase [Desulfotomaculum gibsoniae DSM 7213]
Length = 279
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 140/285 (49%), Positives = 175/285 (61%), Gaps = 17/285 (5%)
Query: 81 FVKYHGLGNDFILVD-NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMR 139
F K HGLGNDF+LV+ N P A K+C RNFG+GADG++ PG D M+
Sbjct: 3 FTKVHGLGNDFVLVNKNEEKNLPGDLAGLAIKVCHRNFGVGADGLVLIEPG-KEADIAMQ 61
Query: 140 IFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE-IQDDGKV---KV 195
I NSDGSE EMCGN +RC A+F E + L K V TGAG++VPE + ++G V +V
Sbjct: 62 IINSDGSEAEMCGNAIRCVAKFAYE-QGLVRKTKMAVETGAGIMVPELVMENGAVIAVRV 120
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
DMG P L+ +P + A + V+ L VD +N+T VSMGNPHCV F
Sbjct: 121 DMGTPYLEREQIPMAGPAGQ---VINEPLAVDNDVFNITAVSMGNPHCVIFVPD------ 171
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
V + L G + E H F +TN EFV++++ +++MRVWERGAG TLACGTGACA V
Sbjct: 172 VAAVPLEHWGTRVETHPAFTRKTNVEFVQVLNEKEVRMRVWERGAGPTLACGTGACATAV 231
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
AAVL G+ R V L G LDIEW DNHVYMTGPAE VF G+
Sbjct: 232 AAVLNGYTGRTVRVHLYAGALDIEWA-TDNHVYMTGPAEQVFTGN 275
>gi|357012420|ref|ZP_09077419.1| DapF [Paenibacillus elgii B69]
Length = 283
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 136/294 (46%), Positives = 177/294 (60%), Gaps = 27/294 (9%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
++F K GLGNDFI++ P QA +LCDR+FGIGADG+++ +P DY M
Sbjct: 6 MNFTKMQGLGNDFIVLHGHKEL-PSDASGQAIRLCDRHFGIGADGLVYLLPSAK-ADYMM 63
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENL-NGKQSFTVHT-GAGLIVPEIQ-DDGKV-- 193
RI NSDGSE E CGN +RC A++I + E + K T+ T GAG ++ +G+V
Sbjct: 64 RIINSDGSEAEQCGNAIRCAAKYIYDHELVPRDKTELTIETIGAGAQAVQLTVKEGRVAA 123
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTF-----G 247
+VDMG P+L +VPT++ + V+ + VDG ++ T VSMGNPHCV F G
Sbjct: 124 VRVDMGAPVLNGREVPTTID---EPQVIGYPVTVDGREFRFTAVSMGNPHCVIFVEDAVG 180
Query: 248 TKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACG 307
T +L GPK E H++FP + N EF + MRVWERGAG TLACG
Sbjct: 181 T-----------DLHAWGPKLETHALFPRKINVEFATVQRRDYADMRVWERGAGPTLACG 229
Query: 308 TGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
TGACA +VA VL G +R + L GG L IEW E DNHVYMTGPAE+VF G++
Sbjct: 230 TGACATLVAGVLTGQMDREAVISLKGGELRIEWNESDNHVYMTGPAEIVFKGTL 283
>gi|154502973|ref|ZP_02040033.1| hypothetical protein RUMGNA_00795 [Ruminococcus gnavus ATCC 29149]
gi|153796512|gb|EDN78932.1| diaminopimelate epimerase [Ruminococcus gnavus ATCC 29149]
Length = 292
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 137/299 (45%), Positives = 184/299 (61%), Gaps = 20/299 (6%)
Query: 67 RTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAAKLCDRNFGIGADGV 124
R F ++ + F K GLGND++ V N E RI E A K+ +RNFG+G+DG+
Sbjct: 4 RYPFSKKKGESRMKFTKMQGLGNDYVYV---NGFEERIENPSEMAVKVSNRNFGVGSDGL 60
Query: 125 IFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIV 184
I P D+ M ++N+DGS EMCGNG+RC A+++ + L K +V T G+
Sbjct: 61 ILINPS-EKADFEMEMYNADGSRGEMCGNGIRCVAKYVYDY-GLTDKTHISVETLGGIKY 118
Query: 185 PEIQ-DDGKV---KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGN 240
++ +DGKV +VDMG PIL + +P + A++ ++V L VD ++ +TCVSMGN
Sbjct: 119 LDLTVEDGKVVLVRVDMGSPILTPAQIP--VIADEAEAVAVPIL-VDETEYQMTCVSMGN 175
Query: 241 PHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGA 300
PH V F ++ L + +IGPKFEHH FP R NTEFV+++ MRVWERG+
Sbjct: 176 PHAVIFMDD------IEHLEIEKIGPKFEHHERFPNRVNTEFVKVLDRHTASMRVWERGS 229
Query: 301 GATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
G TLACGTGACAV VA +L G+ E + TV L GG L IEW E N +YMTGPAEVVF G
Sbjct: 230 GETLACGTGACAVAVACILGGYTENKVTVKLLGGDLLIEWDREQNKIYMTGPAEVVFDG 288
>gi|357058889|ref|ZP_09119735.1| diaminopimelate epimerase [Selenomonas infelix ATCC 43532]
gi|355373235|gb|EHG20556.1| diaminopimelate epimerase [Selenomonas infelix ATCC 43532]
Length = 279
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 133/285 (46%), Positives = 178/285 (62%), Gaps = 16/285 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K+ G GNDF++VD + EP A K+CDR+FGIGADG++ P D M
Sbjct: 1 MKFTKWQGCGNDFVVVDFLDK-EPIDFAALAVKMCDRHFGIGADGLMVVCPS-ETADVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE-IQDDG---KVK 194
R FN DGSEPEMCGNG+RCFAR++ + + Q FT+ T AG +VP I +G V+
Sbjct: 59 REFNPDGSEPEMCGNGIRCFARYLYDYGRMK-TQQFTIETLAGTMVPRVITQNGTVTAVE 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG P+L+ +P ++ + V+ L VDG ++ +TCVSMGNPHCV F
Sbjct: 118 VDMGVPVLEGDKIP--VAGFGAERVIAQPLMVDGTEYKMTCVSMGNPHCVIFVDD----- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ LAE+G +FE+H FP + NTEFVE+ S + +MRVWERGAG TLACGTG CA +
Sbjct: 171 -AEHFPLAELGAQFENHPAFPCKINTEFVEVKSRTHARMRVWERGAGITLACGTGTCATL 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
A VL +R +++ GG + +EW+ D H+ MTGPAE VF G
Sbjct: 230 TAGVLNDVLDRTADIEVDGGVIHVEWR-ADGHILMTGPAEPVFTG 273
>gi|427407029|ref|ZP_18897234.1| diaminopimelate epimerase [Selenomonas sp. F0473]
gi|425707504|gb|EKU70548.1| diaminopimelate epimerase [Selenomonas sp. F0473]
Length = 279
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 135/285 (47%), Positives = 177/285 (62%), Gaps = 16/285 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K+ G GNDF++VD EP A ++CDR+FGIGADG++ P D M
Sbjct: 1 MEFTKWQGCGNDFVVVDFLER-EPVDFAALAVRMCDRHFGIGADGLMVVCPS-ETADIRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV---K 194
R FN DGSEPEMCGNG+RCFAR++ E + K+ FT+ T AG + P I DGKV +
Sbjct: 59 REFNPDGSEPEMCGNGIRCFARYLYEYGRIR-KERFTIETLAGTMTPRIIIADGKVTAVE 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG P+L D+P + VV L V G ++ +TCVSMGNPH V F + +N
Sbjct: 118 VDMGMPVLAGGDIP--VRGFGAARVVAEPLTVAGREYKMTCVSMGNPHAVIF-VDDAENF 174
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
LAE+G +FEHH +FP + NTEFVE+ + +MRVWERGAG TLACGTG CA +
Sbjct: 175 P-----LAELGAQFEHHELFPRKINTEFVEVKDRTHARMRVWERGAGITLACGTGTCATL 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
A VL G +R +++ GG + +EW+ H++MTGPAE VF G
Sbjct: 230 TAGVLTGVLDRAADIEVDGGVIHVEWRAA-GHIFMTGPAEPVFTG 273
>gi|124023206|ref|YP_001017513.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9303]
gi|123963492|gb|ABM78248.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9303]
Length = 323
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 132/286 (46%), Positives = 178/286 (62%), Gaps = 11/286 (3%)
Query: 78 FLHFVKYHGLGNDFILVDNRNS--TEPRITPEQA--AKLCDRNFGIGADGVIFAMPGVNG 133
L F KY GLGNDF+L+D R ++ I P+ A K+CDR+FGIGADG+I A+P
Sbjct: 1 MLQFSKYQGLGNDFVLIDGREGQLSDQVINPDPAWVRKICDRHFGIGADGLILALPPRAD 60
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKV 193
D M+IFN+DGS EMCGNG+RC RF+A+++ Q + + T AG+I P +Q+DG++
Sbjct: 61 GDLRMQIFNADGSLAEMCGNGIRCLTRFLADIDGDLCAQRWNIETLAGIICPILQEDGQI 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG P L +PT+L+ + + E + G NV V MGNPH V ++ ++
Sbjct: 121 CVDMGSPFLDPESIPTTLTIGS-AGLPQGECHLGGTSLNVAAVGMGNPH-VIVPVEDLES 178
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ +K G E H FPA+TN F++I S +QL++RVWERG+G TLACGTGACA
Sbjct: 179 IPFEKW-----GQILEKHQTFPAKTNVHFLKIHSTNQLEIRVWERGSGPTLACGTGACAS 233
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
+VAA L G ++ V LPGG L I W V+MTGPAE VF G
Sbjct: 234 LVAACLLGLSDDHAEVLLPGGVLQISWPGRRGSVFMTGPAEPVFDG 279
>gi|33862988|ref|NP_894548.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9313]
gi|81577635|sp|Q7V7M5.1|DAPF_PROMM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|33634905|emb|CAE20891.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9313]
Length = 303
Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 130/286 (45%), Positives = 177/286 (61%), Gaps = 11/286 (3%)
Query: 78 FLHFVKYHGLGNDFILVDNRNS--TEPRITPEQAA--KLCDRNFGIGADGVIFAMPGVNG 133
L F KY GLGNDF+L+D R T+ I P+ A K+CDR+FGIGADG+I A+P
Sbjct: 4 MLQFSKYQGLGNDFLLIDGREDQLTQQVINPDPAWVRKICDRHFGIGADGLILALPPRAD 63
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKV 193
D M+IFN+DGS EMCGNG+RC RF+A++E Q + + T AG+I P +Q+DG++
Sbjct: 64 GDLRMQIFNADGSLAEMCGNGIRCLTRFLADIEGDLCVQRWNIETLAGIICPVLQEDGQI 123
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG P L +PT+L+ + + E + +V V MGNPH + ++ +N
Sbjct: 124 CVDMGTPFLDPESIPTTLTIGS-AGLPQGECHLGSTSLHVAAVGMGNPHLIV-PVEDLEN 181
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ + G + E H FPA+TN F++I SP+QL++RVWERG+G TLACGTGACA
Sbjct: 182 IPFENW-----GQRLEKHHAFPAKTNVHFLKIHSPNQLEIRVWERGSGPTLACGTGACAS 236
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
+VA L G ++ V LPGG L I W V+MTGPAE +F G
Sbjct: 237 LVATCLLGLSDDHAEVLLPGGVLQISWPGRRGSVFMTGPAEPIFDG 282
>gi|410667775|ref|YP_006920146.1| diaminopimelate epimerase DapF [Thermacetogenium phaeum DSM 12270]
gi|409105522|gb|AFV11647.1| diaminopimelate epimerase DapF [Thermacetogenium phaeum DSM 12270]
Length = 299
Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 134/288 (46%), Positives = 179/288 (62%), Gaps = 16/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPR-ITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K+HGLGNDFIL++ + + P+ P +LCDRNFG+G DG++F G
Sbjct: 1 MQFTKWHGLGNDFILLETKPDSLPKDKIPSFTRRLCDRNFGVGGDGLVFVFQDEQGM-IN 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE-IQDDGKV--- 193
MRIFN+DGSE EMCGN +RC A++ A + L + F + T AG+ VPE I ++G V
Sbjct: 60 MRIFNADGSEAEMCGNAIRCVAKY-AYQKGLAKEIIFQIKTKAGVKVPELILEEGSVAAA 118
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
KVDMGEPIL+ +P ++ VV ++V T VSMGNPHC+ F G
Sbjct: 119 KVDMGEPILEREKIP--VAGEPGDRVVNEVIEVGDNILKFTAVSMGNPHCLIFVPDAGS- 175
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ +GP+ E H +FP+RTN EFVE+++ + ++RVWERG G TLACGTGACA
Sbjct: 176 -----APVRTLGPRLECHRLFPSRTNVEFVEVLNRKEARVRVWERGVGETLACGTGACAT 230
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V L G+ +R+ V LPGG L +EW E+NHVYMTGPAE VF G +
Sbjct: 231 AVGGALAGYLDRKVRVYLPGGELLVEWA-ENNHVYMTGPAEEVFQGYL 277
>gi|404485988|ref|ZP_11021182.1| diaminopimelate epimerase [Barnesiella intestinihominis YIT 11860]
gi|404337316|gb|EJZ63770.1| diaminopimelate epimerase [Barnesiella intestinihominis YIT 11860]
Length = 279
Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 129/285 (45%), Positives = 181/285 (63%), Gaps = 16/285 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K G GND+I + N P + ++ DR+FGIGADG++ MP + D+ M
Sbjct: 1 MRFTKMQGAGNDYIYL-NGFEKLPADLSALSRRMSDRHFGIGADGIVVIMPS-DHCDFRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL--IVPEIQDD--GKVK 194
R+FN+DG+E EMCGN RC +++ + + L K T+ T AG+ ++ ++++ +V
Sbjct: 59 RMFNADGTEAEMCGNASRCIGKYVYD-KGLTSKTLLTLETLAGIKHLILDVKNGTVNRVS 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG PIL A +P + S ++ ++ L+++ +N+TCVSMGNPH V F +
Sbjct: 118 VDMGNPILSAPKIPVNTSLSE---IISYPLEIENNTFNITCVSMGNPHTVIFLNE----- 169
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+++ +L IG EHH +FP RTN EFVEI+SP LKMRVWERG G TLACGTGACA +
Sbjct: 170 -MERYDLHHIGALIEHHELFPKRTNVEFVEILSPDHLKMRVWERGTGETLACGTGACASL 228
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VAAVL G A R+ + L GG LDIEW E+++ VYMTG A VF G
Sbjct: 229 VAAVLNGKANRKAVLHLLGGNLDIEWNEKNDRVYMTGEAVTVFEG 273
>gi|297617036|ref|YP_003702195.1| diaminopimelate epimerase [Syntrophothermus lipocalidus DSM 12680]
gi|297144873|gb|ADI01630.1| diaminopimelate epimerase [Syntrophothermus lipocalidus DSM 12680]
Length = 282
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 180/293 (61%), Gaps = 22/293 (7%)
Query: 79 LHFVKYHGLGNDFILVD-NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K HGLGNDFI+++ ++ P A KLCDR+FGIG DG++ D
Sbjct: 1 MRFTKMHGLGNDFIVIEAEKSELSPEDYSRTAIKLCDRHFGIGGDGLVIVGKD-RELDVF 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE-IQDDG---KV 193
MRIFN DGSEPEMCGN +RC ++F+ E L +V+T AG PE I +G KV
Sbjct: 60 MRIFNPDGSEPEMCGNAIRCVSKFVWE-RGLVSTTRISVNTLAGPRYPEVILKNGEVEKV 118
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+VDMGEPIL+ S +P S K VV ELD ++ +T VSMGNPHCV F
Sbjct: 119 RVDMGEPILERSLIPMLGSPGK---VVGEELDTTAGRFRITAVSMGNPHCVVF------- 168
Query: 254 LKVDKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
VD+ + ++E GP E+H VFP+RTN EF +I + + MRVWERGAG TLACGTGA
Sbjct: 169 --VDEFSSVPVSEWGPVLENHPVFPSRTNVEFAKIEDENTVSMRVWERGAGETLACGTGA 226
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
CA +VA+ L RR TV L GG L IEW ++NHVYMTG A+ VF G V L
Sbjct: 227 CATLVASYLNDLTGRRATVRLKGGELIIEWDPDNNHVYMTGEAKEVFTGEVDL 279
>gi|408792617|ref|ZP_11204227.1| diaminopimelate epimerase [Leptospira meyeri serovar Hardjo str.
Went 5]
gi|408464027|gb|EKJ87752.1| diaminopimelate epimerase [Leptospira meyeri serovar Hardjo str.
Went 5]
Length = 280
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 135/288 (46%), Positives = 178/288 (61%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
++F K G+GND++ +D + R++PEQ KL DRNFGIG DGVIF G ++ M
Sbjct: 3 INFTKMEGIGNDYVYID-ATKNDIRLSPEQIQKLSDRNFGIGGDGVIFIRNSKTG-EFQM 60
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ--DDGKVK-- 194
++NSDGS EMCGNGVRC +F+ + L Q T+ TG G++ +++ ++GKV+
Sbjct: 61 DMYNSDGSSSEMCGNGVRCVGKFVFD-HGLTKNQKPTIETGKGVLTLDLKTGNNGKVEMV 119
Query: 195 -VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMGEPILK + VP + D+ V+ L+V G K++ T VSMGNPHCV +
Sbjct: 120 TVDMGEPILKPTLVPIVWTG--DEPVINQVLEVQGKKYHFTAVSMGNPHCVIYVDD---- 173
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + EIGP E+H +FP R N EFV + L R WERGAG TLACGTGACAV
Sbjct: 174 --ADAFPVREIGPLIENHPLFPRRVNVEFVSVRGKDHLYQRTWERGAGETLACGTGACAV 231
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA++L G R +DL GG L +EWK E+ V MTGPA+ VF G V
Sbjct: 232 TVASILNGKTGRSVQIDLRGGTLHVEWK-ENGSVLMTGPAKEVFSGEV 278
>gi|260893237|ref|YP_003239334.1| diaminopimelate epimerase [Ammonifex degensii KC4]
gi|260865378|gb|ACX52484.1| diaminopimelate epimerase [Ammonifex degensii KC4]
Length = 279
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 147/289 (50%), Positives = 182/289 (62%), Gaps = 18/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+HFVK HGLGNDF++V R T P TPE A K+C +FG+GADG++F +P D TM
Sbjct: 1 MHFVKMHGLGNDFVVVMAR--TLPPDTPELARKVCRPHFGVGADGLVFILPS-EEADITM 57
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV---K 194
RIFN+DGSE EMCGN +RC A+ E L Q + TGAG+ E+ DGKV
Sbjct: 58 RIFNADGSEAEMCGNAIRCVAKLAYET-RLIPYQRMRIATGAGIKPVELTVKDGKVVSCT 116
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDV-DGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMGEPIL+ S +P K VV L DG+ VT +S GNPHCV F
Sbjct: 117 VDMGEPILERSAIPMQGPPGK---VVNEPLIFEDGLVLRVTALSFGNPHCVLFVPA---- 169
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V++ + E+GP+ EHH FP RTN EFVE++ PS++++RVWERG G TLACG+GACA
Sbjct: 170 --VEEAPVEELGPRLEHHPAFPHRTNVEFVEVVGPSEIRVRVWERGVGETLACGSGACAA 227
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VA++L G+ R V LPGG L I WKEED HVY+ GPA VF G L
Sbjct: 228 AVASILNGYTAREIVVHLPGGDLRIHWKEEDGHVYLQGPATTVFKGEWL 276
>gi|149177050|ref|ZP_01855658.1| diaminopimelate epimerase [Planctomyces maris DSM 8797]
gi|148844115|gb|EDL58470.1| diaminopimelate epimerase [Planctomyces maris DSM 8797]
Length = 279
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 131/288 (45%), Positives = 183/288 (63%), Gaps = 22/288 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HG GND++ V+ T P A + DR+ GIG+DG+I P D M
Sbjct: 1 MKFTKMHGAGNDYVYVNCFEETLPEDIASLAIAVSDRHTGIGSDGLILICPS-EKADAQM 59
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KVK 194
R+FN+DGSE EMCGNGVRC A+++ + ++ +Q+ + TGAG++ +++ G +V+
Sbjct: 60 RMFNADGSESEMCGNGVRCVAKYVYD-HGISNQQTLKIETGAGVLSLDLELAGSKVSQVR 118
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
V+MG+PIL ++++PT L + V + L+V VTCVSMGNPHC+TF
Sbjct: 119 VNMGKPILTSAEIPTLLPGDPP---VNAPLEVGAQTLEVTCVSMGNPHCITF-------- 167
Query: 255 KVDKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
VD++N + IGP+ E H +FP R N EF+E+ISP++LKMRVWERG+G T ACGTGAC
Sbjct: 168 -VDEVNDHWVHGIGPQVEVHPMFPRRVNAEFIEVISPAELKMRVWERGSGETQACGTGAC 226
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
A VA VL G +ER + LPGG L +EW + D V+MTGPA V+ G
Sbjct: 227 ASAVAGVLTGRSERNVLIHLPGGDLRLEWADND-EVFMTGPAVEVYQG 273
>gi|430750402|ref|YP_007213310.1| diaminopimelate epimerase [Thermobacillus composti KWC4]
gi|430734367|gb|AGA58312.1| diaminopimelate epimerase [Thermobacillus composti KWC4]
Length = 272
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/282 (48%), Positives = 175/282 (62%), Gaps = 17/282 (6%)
Query: 85 HGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSD 144
HGLGNDFI+V P A +LCDR+FGIGADG+++ +P + D+ MRI N D
Sbjct: 2 HGLGNDFIVVAGEREL-PEGASGLAVQLCDRHFGIGADGLVYILPS-DRADFRMRIMNPD 59
Query: 145 GSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT-GAGLIVPEIQDDG----KVKVDMGE 199
GSE E CGN +RC A+++ + L K + T+ T GA + +I +G KV+VDMGE
Sbjct: 60 GSEAEQCGNAIRCVAKYVYD-RGLISKDTVTIETLGASVQQLQIAAEGGKAAKVRVDMGE 118
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
PIL VPT++ N V+ ++ +G ++ T VSMGNPHCV F
Sbjct: 119 PILNGLAVPTTIDLNP---VIGHPIEAEGRTFHFTAVSMGNPHCVIFVDDAA------SF 169
Query: 260 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVL 319
+L + GP E H +FP +TN EFV + S + MRVWERGAG TLACGTGACA +VA+VL
Sbjct: 170 DLHKWGPLLETHPLFPRKTNVEFVTVASRTHAVMRVWERGAGPTLACGTGACATLVASVL 229
Query: 320 EGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
G +R TV L GG L IEW EEDNHVYMTGPA VF G++
Sbjct: 230 GGLTDRTATVSLAGGDLLIEWSEEDNHVYMTGPAAEVFTGTL 271
>gi|78212901|ref|YP_381680.1| diaminopimelate epimerase [Synechococcus sp. CC9605]
gi|78197360|gb|ABB35125.1| diaminopimelate epimerase [Synechococcus sp. CC9605]
Length = 368
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/291 (45%), Positives = 176/291 (60%), Gaps = 22/291 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRIT----PEQAAKLCDRNFGIGADGVIFAMPGVNG 133
L F KY GLGNDF++V+ R P P ++CDR FG+G DG+I A+P
Sbjct: 1 MLQFSKYQGLGNDFLIVEGRQGQLPDAISNPDPAWVRRICDRRFGVGGDGLILALPAQAD 60
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKV 193
+ MRI N DGSE EMCGNG+RC AR++A+ + + + + T AG+I PE+ DG++
Sbjct: 61 GELRMRILNVDGSEAEMCGNGIRCLARYLADTDGDAPGRRWDIETLAGMIRPELMADGQL 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+VDMG P L + +PT+L + + + L ++G + V V MGNPH V
Sbjct: 121 RVDMGPPFLSSEGIPTTLM--PEDGLPQGVLLLEGEQLKVAAVGMGNPHVV--------- 169
Query: 254 LKVDKLNLAEI-----GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
+ VD +LA I G E H FPA+TN F+++ + +L++RVWERGAG TLACGT
Sbjct: 170 VPVD--DLASIPFDAWGAALEVHPAFPAKTNVHFLQVHNRERLEIRVWERGAGPTLACGT 227
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
GACA +VAAVL G A+ V LPGGPL IEW++ V MTGPAE VF G
Sbjct: 228 GACATLVAAVLLGLADDCAEVVLPGGPLMIEWRDRTGSVLMTGPAEAVFDG 278
>gi|336433565|ref|ZP_08613382.1| diaminopimelate epimerase [Lachnospiraceae bacterium 2_1_58FAA]
gi|336016001|gb|EGN45798.1| diaminopimelate epimerase [Lachnospiraceae bacterium 2_1_58FAA]
Length = 277
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/287 (47%), Positives = 180/287 (62%), Gaps = 20/287 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K GLGND++ V N E RI E A K+ +RNFG+G+DG+I P D+
Sbjct: 1 MKFTKMQGLGNDYVYV---NGFEERIENPSEMAVKVSNRNFGVGSDGLILINPS-EKADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
M ++N+DGS EMCGNG+RC A+++ + L K +V T G+ ++ +DGKV
Sbjct: 57 EMEMYNADGSRGEMCGNGIRCVAKYVYDY-GLTDKTHISVETLGGIKYLDLTVEDGKVVL 115
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
+VDMG PIL + +P + A++ ++V L VD ++ +TCVSMGNPH V F
Sbjct: 116 VRVDMGSPILTPAQIP--VIADEAEAVAVPIL-VDETEYQMTCVSMGNPHAVIFMDD--- 169
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
++ L + +IGPKFEHH FP R NTEFV+++ MRVWERG+G TLACGTGACA
Sbjct: 170 ---IEHLEMEKIGPKFEHHERFPNRVNTEFVKVLDRHTASMRVWERGSGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
V VA +L G+ E + TV L GG L IEW E N +YMTGPAEVVF G
Sbjct: 227 VAVACILGGYTENKVTVKLLGGDLLIEWDREQNKIYMTGPAEVVFDG 273
>gi|253575768|ref|ZP_04853103.1| diaminopimelate epimerase [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251844811|gb|EES72824.1| diaminopimelate epimerase [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 278
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/288 (46%), Positives = 177/288 (61%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HGLGNDF++ P E A + CDR FG+G DG++F +P + D+ M
Sbjct: 1 MEFTKMHGLGNDFLVFYGEQQL-PDNVSELAIRWCDRYFGVGGDGLVFILPS-DKADFKM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT-GAGLIVPEIQ-DDGKVK-- 194
RI NSDG+E E CGN +RC A+++ + L K S T+ T GAG+ +Q +DG VK
Sbjct: 59 RIINSDGTEAEQCGNAIRCVAKYVYD-NRLVDKDSVTIETLGAGVQQVTLQVEDGVVKTV 117
Query: 195 -VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMGEPIL +PT+L+ N VV ++ +G ++ T VSMGNPHCV + + N
Sbjct: 118 RVDMGEPILDGLTIPTTLNQN---PVVSQPIETNGQEFKFTAVSMGNPHCVIY-VDDAPN 173
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V GPK E H FP + N EF + + +++MRVWERGAG TLACGTGACA
Sbjct: 174 FDVTTW-----GPKLEVHPYFPRKINVEFATVTNRQRVEMRVWERGAGPTLACGTGACAT 228
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+V++VL G +R + L GG L IEW E DNHVYMTGPAE V+ GSV
Sbjct: 229 LVSSVLNGLTDRAAWIGLKGGDLFIEWDERDNHVYMTGPAEAVYKGSV 276
>gi|220931996|ref|YP_002508904.1| diaminopimelate epimerase [Halothermothrix orenii H 168]
gi|254767107|sp|B8CX90.1|DAPF_HALOH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|219993306|gb|ACL69909.1| Diaminopimelate epimerase [Halothermothrix orenii H 168]
Length = 284
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/290 (45%), Positives = 183/290 (63%), Gaps = 16/290 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
L F K HG GNDFI+V+ N + + + A +LC R+F IGADG+I +P + D+
Sbjct: 3 LSFTKMHGTGNDFIMVNGSNYPDLDFS-KLARQLCRRHFSIGADGLIIVLPPESVEHDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI----QDDGKV 193
MRIFN+DGSE EMCGNG+RCFA ++ E NL + + T AG+I PEI D +
Sbjct: 62 MRIFNADGSEAEMCGNGIRCFAHYLRE-NNLTTRDVLKIETLAGIITPEIVSYNGDKSLI 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
KV+MG P K+ ++P ++ D V L + K N+ CVSMGNPH + F
Sbjct: 121 KVNMGRPHFKSEEIPVNIEDELDY-VKNFPLKIGNKKLNINCVSMGNPHTIIFVED---- 175
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V+++ ++ G + EH+ +FP +TN EF++I S ++ MRVWERG+G TLACGTGACA
Sbjct: 176 --VNQIPVSTWGQEIEHNPLFPQKTNVEFIQIQSEDEIIMRVWERGSGITLACGTGACAS 233
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VVA + G + TV LPGG L+IEW+E+D V+MTGPAE V+ G +++
Sbjct: 234 VVAGIKNGLLKNMVTVHLPGGDLNIEWQEQD--VFMTGPAESVYTGKIVI 281
>gi|334128914|ref|ZP_08502791.1| diaminopimelate epimerase [Centipeda periodontii DSM 2778]
gi|333386013|gb|EGK57236.1| diaminopimelate epimerase [Centipeda periodontii DSM 2778]
Length = 279
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/286 (45%), Positives = 178/286 (62%), Gaps = 16/286 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K+ G GNDF++VD + EP A ++CDR+FGIGADG++ A P D M
Sbjct: 1 MKFTKWQGCGNDFVVVDFLDK-EPMDFAALAVRMCDRHFGIGADGLMVACPS-ETADVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-QDDG---KVK 194
R FN DGSEPEMCGNG+RCFAR++ + + K+ FT+ T AG +VP I DG V+
Sbjct: 59 REFNPDGSEPEMCGNGIRCFARYLYDYGRIK-KECFTIETLAGTMVPRIITQDGTVTAVE 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG P+L +P ++ + VV L VDG ++ +TCVSMGNPHCV F
Sbjct: 118 VDMGVPVLAGDKIP--VAGFGVEQVVAQPLTVDGTEYKMTCVSMGNPHCVIFVDD----- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ L ++G +FE+H FP + NTEFV++ + +MRVWERGAG TLACGTG CA +
Sbjct: 171 -AEGFPLVKLGAQFENHPAFPRKINTEFVQVRDRTHARMRVWERGAGITLACGTGTCATL 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
A VL +R +++ GG + +EW+ D H++MTGPAE VF G
Sbjct: 230 TAGVLNDVLDRAADIEVDGGVIHVEWR-ADGHIFMTGPAEPVFTGE 274
>gi|283781733|ref|YP_003372488.1| diaminopimelate epimerase [Pirellula staleyi DSM 6068]
gi|283440186|gb|ADB18628.1| diaminopimelate epimerase [Pirellula staleyi DSM 6068]
Length = 280
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 128/285 (44%), Positives = 177/285 (62%), Gaps = 14/285 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K G GND++ ++ P E A ++ DR+FG+G DGVI+ P G D M
Sbjct: 1 MRFTKMQGAGNDYVYINCFAEQFPADPAEVARQMSDRHFGVGGDGVIYICPSNQGADAWM 60
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KVK 194
R+FN+DGSE EMCGNG+RC A+F+ + + + TGAG++ +++ +V+
Sbjct: 61 RMFNADGSESEMCGNGLRCVAKFVHD-HGIKTATQLRLQTGAGILTVDLEVKAGKAHRVR 119
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
V+MG+PI++A+ +PT L N V + L+ G + VT VSMGNPHCV F +
Sbjct: 120 VNMGQPIIEAAKIPTLLPGNPP---VNATLEAGGRSFEVTSVSMGNPHCVVFVPE----- 171
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
D+L L IGPK EH +FP R N EFVE++S ++L+ R WERG+G TLACGTGA AV
Sbjct: 172 ATDELVLG-IGPKIEHSPMFPRRVNVEFVEVLSRTELRQRTWERGSGETLACGTGASAVC 230
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VA VL G +R+ T+ L GG L++EW E DN +Y TGPA VF G
Sbjct: 231 VAGVLTGRTQRKVTIHLLGGDLELEWNEADNCIYKTGPAVEVFSG 275
>gi|414152967|ref|ZP_11409294.1| Diaminopimelate epimerase [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
gi|411455349|emb|CCO07196.1| Diaminopimelate epimerase [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
Length = 282
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 140/287 (48%), Positives = 181/287 (63%), Gaps = 19/287 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTE--PRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HGLGNDFIL+ N + E P A ++CDR FGIGADG++ + D
Sbjct: 1 MFFTKVHGLGNDFILI-NAGTGEGLPDDCSTLAREMCDRRFGIGADGLVLLLDS-EVADV 58
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-QDDGKV-- 193
M+I NSDGSE EMCGN +RC A+++ E + K V T AG++VP+I ++G+V
Sbjct: 59 RMKIINSDGSEAEMCGNAIRCVAKYLYE-HGIVRKDEIKVETLAGIMVPQIIHNNGEVSA 117
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
+VDMG P L +D+P + V+ L+V G +NVT VSMGNPHCV F
Sbjct: 118 VRVDMGVPRLARADIPMLGPVGQ---VINEPLEVAGQTFNVTAVSMGNPHCVIFVPD--- 171
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V + L+EIGP E H FP +TN EFV+ +SP +++M VWERGAG TLACGTGACA
Sbjct: 172 ---VAAVPLSEIGPLLETHPSFPRKTNVEFVQTVSPGEVRMVVWERGAGPTLACGTGACA 228
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
V VA VL G+ E++ TV LPGG L IEW ++ V+MTGPAE VF G
Sbjct: 229 VAVAGVLNGYTEKKVTVHLPGGSLFIEWA-DNGRVFMTGPAEEVFNG 274
>gi|401564474|ref|ZP_10805366.1| diaminopimelate epimerase [Selenomonas sp. FOBRC6]
gi|400188801|gb|EJO22938.1| diaminopimelate epimerase [Selenomonas sp. FOBRC6]
Length = 279
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 130/286 (45%), Positives = 180/286 (62%), Gaps = 16/286 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K+ G GNDF++VD +P A K+CDR+FGIGADG++ P D M
Sbjct: 1 MKFTKWQGCGNDFVIVDFLEK-KPVDFAALAVKMCDRHFGIGADGLMVVCPS-ETADVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDDG--KVK 194
R FN DG+EPEMCGNG+RCFAR++ + + ++ FT+ T AG +VP + ++D V+
Sbjct: 59 REFNPDGTEPEMCGNGIRCFARYLYDYGRVR-REQFTIETIAGTMVPRVILENDAVTAVE 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG P+L D+P ++ + +V L VDG ++ +TCVSMGNPH V F
Sbjct: 118 VDMGVPVLAGEDIP--VAGFGAEQIVAQPLVVDGKEYRMTCVSMGNPHAVIFVDD----- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ LAE+G KFE+H+VFP + NTEFVE+ + +MRVWERGAG TLACGTG CA +
Sbjct: 171 -AEGFPLAELGTKFENHAVFPRKINTEFVEVRDRTHARMRVWERGAGITLACGTGTCATL 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
A VL +R +++ GG + +EW+E H++MTGPAE VF G
Sbjct: 230 TAGVLNDVLDRAADIEVDGGVIHVEWRES-GHIFMTGPAEPVFTGE 274
>gi|333978739|ref|YP_004516684.1| diaminopimelate epimerase [Desulfotomaculum kuznetsovii DSM 6115]
gi|333822220|gb|AEG14883.1| Diaminopimelate epimerase [Desulfotomaculum kuznetsovii DSM 6115]
Length = 280
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 135/289 (46%), Positives = 182/289 (62%), Gaps = 18/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEP--RITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HGLGNDFILVD P E A +LC R FGIGADG++ + D
Sbjct: 1 MQFFKVHGLGNDFILVDLVKQEWPGGEDLSESARRLCHRQFGIGADGLVL-LHSSPRADV 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE-IQDDGKV-- 193
M+I N DGSE EMCGN +RC A+++ E + K+ + T AG++VP + ++G+V
Sbjct: 60 FMQIINPDGSEAEMCGNAIRCVAKYLYERGGIK-KEVMHIETRAGVMVPRLVLENGRVAA 118
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
+VDMG P L+ D+P V+ L ++G ++VT VSMGNPHCV F
Sbjct: 119 VRVDMGIPRLERQDIPM---IGPPGQVINEPLVLEGQAFHVTAVSMGNPHCVLFVPD--- 172
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V++++L +GPK E H +FP +TN EFV++++ ++++RVWERGAG TLACGTGACA
Sbjct: 173 ---VERVDLHGLGPKLEKHPLFPRKTNVEFVQVLNRGEVRVRVWERGAGPTLACGTGACA 229
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VVA VL + +R V LPGG L IEWK ED+H+YMTGPAE VF G +
Sbjct: 230 TVVAGVLNNYTDREVKVHLPGGTLLIEWK-EDDHLYMTGPAEEVFCGQI 277
>gi|183220003|ref|YP_001837999.1| diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|167778425|gb|ABZ96723.1| Diaminopimelate epimerase (DAP epimerase) [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
Length = 286
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 134/288 (46%), Positives = 176/288 (61%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
++F K G+GND++ +D + R++PEQ KL DRNFGIG DGVIF + N ++ M
Sbjct: 9 INFTKMEGIGNDYVYID-ATKNDIRLSPEQIQKLSDRNFGIGGDGVIF-IRNSNSGEFQM 66
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQD--DGKVK-- 194
++NSDGS EMCGNGVRC +F+ + L Q T+ TG G++ +++ +GKV+
Sbjct: 67 DMYNSDGSSSEMCGNGVRCVGKFVYD-HGLTKNQKPTIETGKGVLTLDLKTGTNGKVEMV 125
Query: 195 -VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMGEPILK S VP D+ V+ ++V G +++ T VSMGNPHCV +
Sbjct: 126 TVDMGEPILKPSLVPIVWKG--DEPVINQVIEVQGKQYHFTAVSMGNPHCVIYVDD---- 179
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + EIGP E+H FP R N EFV I L R WERG G TLACGTGACAV
Sbjct: 180 --ADDFPVREIGPIIENHPFFPRRVNVEFVSIKGKDHLYQRTWERGTGETLACGTGACAV 237
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA++L G R +DL GG L IEW +E+ V+MTGPA+ VF G V
Sbjct: 238 TVASILNGKTGRSVRIDLRGGTLHIEW-QENGSVFMTGPAKEVFSGEV 284
>gi|189910124|ref|YP_001961679.1| diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|226724214|sp|B0SC36.1|DAPF_LEPBA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|167774800|gb|ABZ93101.1| Diaminopimelate epimerase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
Length = 280
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 134/288 (46%), Positives = 176/288 (61%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
++F K G+GND++ +D + R++PEQ KL DRNFGIG DGVIF + N ++ M
Sbjct: 3 INFTKMEGIGNDYVYID-ATKNDIRLSPEQIQKLSDRNFGIGGDGVIF-IRNSNSGEFQM 60
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQD--DGKVK-- 194
++NSDGS EMCGNGVRC +F+ + L Q T+ TG G++ +++ +GKV+
Sbjct: 61 DMYNSDGSSSEMCGNGVRCVGKFVYD-HGLTKNQKPTIETGKGVLTLDLKTGTNGKVEMV 119
Query: 195 -VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMGEPILK S VP D+ V+ ++V G +++ T VSMGNPHCV +
Sbjct: 120 TVDMGEPILKPSLVPIVWKG--DEPVINQVIEVQGKQYHFTAVSMGNPHCVIYVDD---- 173
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + EIGP E+H FP R N EFV I L R WERG G TLACGTGACAV
Sbjct: 174 --ADDFPVREIGPIIENHPFFPRRVNVEFVSIKGKDHLYQRTWERGTGETLACGTGACAV 231
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA++L G R +DL GG L IEW +E+ V+MTGPA+ VF G V
Sbjct: 232 TVASILNGKTGRSVRIDLRGGTLHIEW-QENGSVFMTGPAKEVFSGEV 278
>gi|398335153|ref|ZP_10519858.1| diaminopimelate epimerase [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 301
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 135/300 (45%), Positives = 180/300 (60%), Gaps = 17/300 (5%)
Query: 67 RTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIF 126
R F+ L F K G+GND++ +D+ T+ R+TPEQ K+ DRNFGIG+DGVIF
Sbjct: 12 RIQFISGVPVAALKFTKMEGIGNDYVYIDS-TKTDIRLTPEQIQKISDRNFGIGSDGVIF 70
Query: 127 AMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE 186
+ N D+ M ++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +
Sbjct: 71 -IRNSNQGDFMMDMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTNSKNPKIETGAGILEVD 128
Query: 187 IQDDGK-----VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNP 241
++ V VDMG+PIL S VP + N+D +++ L+V G T VSMGNP
Sbjct: 129 LKIGSGNKVDLVSVDMGKPILIPSKVPV-IWKNED-TIIDQVLEVAGKNLKFTAVSMGNP 186
Query: 242 HCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAG 301
HCV F D+ + EIGP EHHS+FP R N EFV + L R WERGAG
Sbjct: 187 HCVIFVDDS------DQFPVREIGPLIEHHSIFPKRVNVEFVTVRGKDHLYQRTWERGAG 240
Query: 302 ATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
TLACGTGACAV+VA L G + + +DL GG L I+W+E N V MTGPA +F G +
Sbjct: 241 ETLACGTGACAVMVAGNLTGRSGKDIQIDLRGGTLRIQWQESGN-VLMTGPAREIFSGEI 299
>gi|187251423|ref|YP_001875905.1| diaminopimelate epimerase [Elusimicrobium minutum Pei191]
gi|229807517|sp|B2KDH2.1|DAPF_ELUMP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|186971583|gb|ACC98568.1| Diaminopimelate epimerase [Elusimicrobium minutum Pei191]
Length = 274
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 134/283 (47%), Positives = 179/283 (63%), Gaps = 15/283 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQA--AKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ FVKY GLGNDFIL+D + +I A KLCDR+FGIGADG+I P + DY
Sbjct: 1 MEFVKYQGLGNDFILID---CVKIKIDGLNALGKKLCDRHFGIGADGLIAVFPSAS-ADY 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
+RI NSDG+EPEMCGNG+RC RF+ + + ++ T T AG I E+ + VKVD
Sbjct: 57 KIRIINSDGTEPEMCGNGIRCAMRFV--FDYIKPQRKLTFETLAGPIKTELLAENLVKVD 114
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L A+ +P ++S + D V + ++G K T VSMGNPH V F +
Sbjct: 115 MGAPKLTAAQIPLNIS-DSDGRAVDIPVKLEGGKIKGTGVSMGNPHFVIFVED------I 167
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
K ++A+ G + E+++ FP +TN EFV++I+PS+L M+VWERG G TLACGTGACA +VA
Sbjct: 168 KKTDVAKTGKEVENNTAFPQKTNVEFVQVITPSRLCMKVWERGVGITLACGTGACASLVA 227
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VL ER V+L GG L +EW ++ V+MTGPA VF G
Sbjct: 228 GVLNNKTERLALVELDGGQLTVEWPDDGASVFMTGPATEVFSG 270
>gi|134299550|ref|YP_001113046.1| diaminopimelate epimerase [Desulfotomaculum reducens MI-1]
gi|229807506|sp|A4J568.1|DAPF_DESRM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|134052250|gb|ABO50221.1| diaminopimelate epimerase [Desulfotomaculum reducens MI-1]
Length = 284
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 138/289 (47%), Positives = 184/289 (63%), Gaps = 23/289 (7%)
Query: 79 LHFVKYHGLGNDFILVD---NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAM-PGVNGT 134
++F K HGLGNDFILV+ + T+ T A ++CDR FGIGADG++ GV
Sbjct: 1 MYFTKVHGLGNDFILVNAGTGQGFTDDCST--LAKEVCDRKFGIGADGLVLLYDSGV--A 56
Query: 135 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-QDDGKV 193
D M+I NSDGSE EMCGN +RC A+++ + + K V T AG+IVP+I Q +G V
Sbjct: 57 DVRMKIVNSDGSEAEMCGNAIRCVAKYLYD-HGIIKKDEIKVETLAGIIVPQIIQQEGSV 115
Query: 194 K---VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKE 250
K VDMGEP ++ +++P V+ EL V+G + VT VSMGNPHC+ F
Sbjct: 116 KAVRVDMGEPRVERAEIPM---IGPPGQVIGEELAVNGKVYLVTAVSMGNPHCIIFVPD- 171
Query: 251 GQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
++ ++L ++GP+ E H FP +TN EFV+++ P++++M VWERGAG T+ACGTGA
Sbjct: 172 -----LEDISLTQVGPQIEVHPAFPKKTNVEFVQVLGPNEVRMVVWERGAGPTMACGTGA 226
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
CAV VA VL G ER TV LPGG L IEW E+ +YMTGPA VF G
Sbjct: 227 CAVAVAGVLNGFTERMVTVHLPGGSLMIEWA-ENGRIYMTGPATEVFSG 274
>gi|336435955|ref|ZP_08615668.1| diaminopimelate epimerase [Lachnospiraceae bacterium 1_4_56FAA]
gi|336007995|gb|EGN38014.1| diaminopimelate epimerase [Lachnospiraceae bacterium 1_4_56FAA]
Length = 282
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 132/291 (45%), Positives = 184/291 (63%), Gaps = 20/291 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI--TPEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
L F K GLGND++ VD T+ ++ E A K+ DR+FGIG+DG+I + + D+
Sbjct: 6 LQFTKMQGLGNDYVYVD---CTKKKLENASEVAVKVSDRHFGIGSDGLIL-INASSVADF 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKVK- 194
M ++N+DGS EMCGNG+RC A+++ + L + +V T G+ ++ +G+V+
Sbjct: 62 EMEMYNADGSRGEMCGNGIRCVAKYVYDY-GLTDQTHISVETLGGIKYLDLTVKEGRVRQ 120
Query: 195 --VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
VDMG P+L +++P + +SV+ ++VDG ++ +T V MGNPH V F
Sbjct: 121 VRVDMGRPMLCPTEIPVIANG---ESVIDMPIEVDGTEYRMTAVGMGNPHTVVFVED--- 174
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD L + +IGPKFEHH FP R NTEFV+++ + +KMRVWERG+G TLACGTGACA
Sbjct: 175 ---VDGLEIEQIGPKFEHHPCFPNRVNTEFVKVLDRNTVKMRVWERGSGETLACGTGACA 231
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V VA +L G E + TV L GG L IEW E + VYMTGPAEVVF G + L
Sbjct: 232 VAVACILNGLTENKVTVQLLGGDLLIEWDREADKVYMTGPAEVVFDGEIEL 282
>gi|87307767|ref|ZP_01089910.1| diaminopimelate epimerase [Blastopirellula marina DSM 3645]
gi|87289381|gb|EAQ81272.1| diaminopimelate epimerase [Blastopirellula marina DSM 3645]
Length = 283
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 131/290 (45%), Positives = 184/290 (63%), Gaps = 17/290 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLC-DRNFGIGADGVIFAMPGVNGTDYT 137
+ F K HG+GND++ V+ P PE A L DR+FGIG DG+I P D
Sbjct: 1 MRFTKMHGIGNDYVYVNCFAEQLPA-APETIAPLVSDRHFGIGGDGLILITPS-EVADAR 58
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KV 193
MR+FN+DGSE EMCGNG+RC A+++ + ++ K++ + TGAG++ +I+ + +V
Sbjct: 59 MRMFNADGSESEMCGNGLRCVAKYVFD-HDIAKKETLKLETGAGVLTVQIETENGLARQV 117
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+V+MG+PIL+ +PT +N VV ++++ G ++VTCVSMGNPHCV F K
Sbjct: 118 RVNMGQPILEGKKIPTIFDSN---PVVNQKIEIAGQSFDVTCVSMGNPHCVIFVEK---- 170
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+L L +IGP+ E + FP+R N EFVE++SP++++ R WERG+G TLACGTGA AV
Sbjct: 171 -ATDELVL-KIGPQIERSTYFPSRVNVEFVEVVSPNEVRQRTWERGSGETLACGTGASAV 228
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA VL G +R+ L GG L +EW E DN VY TG A VF G +L
Sbjct: 229 CVAGVLTGRTKRKILNHLLGGDLQLEWNEADNCVYKTGGATEVFTGEWML 278
>gi|302389582|ref|YP_003825403.1| diaminopimelate epimerase [Thermosediminibacter oceani DSM 16646]
gi|302200210|gb|ADL07780.1| diaminopimelate epimerase [Thermosediminibacter oceani DSM 16646]
Length = 283
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/290 (49%), Positives = 180/290 (62%), Gaps = 16/290 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HGLGNDFI+V N + RI ++A K+CDR+ GIGADG++ +P + D M
Sbjct: 4 MKFTKMHGLGNDFIVV-NGFKEDVRIIFKKAEKICDRHVGIGADGILLVLPS-DKCDLKM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDD--GKVK 194
RI NSDGSE +MCGNG+RCFAR+ A L K S TV T AG+I PEI +DD V+
Sbjct: 62 RIINSDGSEADMCGNGIRCFARY-AFSRGLVNKTSITVETLAGVIKPEIIIKDDRIESVR 120
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG L+ D+P ++ N ++ V E+ VD + T VSMGNPHCV F
Sbjct: 121 VDMGCYSLQKKDIP--VAGNPNEEAVDLEISVDDRVFKFTGVSMGNPHCVIFVDD----- 173
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V+ + GP E H +FP +TN EFVE +LKMRVWERGAG T+ACGTGACA
Sbjct: 174 -VESFPVERFGPVIERHPLFPKKTNVEFVEFKGQDRLKMRVWERGAGLTMACGTGACASA 232
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VAA +G + TV LPGG L IE E++ VYMTGPA VF G + L+
Sbjct: 233 VAAYKKGIVGPKVTVSLPGGDLFIEI-EKNGRVYMTGPAVEVFSGYIDLS 281
>gi|312792704|ref|YP_004025627.1| diaminopimelate epimerase [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312179844|gb|ADQ40014.1| diaminopimelate epimerase [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 278
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 129/287 (44%), Positives = 179/287 (62%), Gaps = 17/287 (5%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F K HGLGNDFI++D R + A ++C R+ G+GADG++ + D MRI
Sbjct: 3 FSKMHGLGNDFIVIDARGKEDIDYNS-LAKRMCHRHIGVGADGLLLVLDS-KLADIRMRI 60
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDDG---KVKV 195
NSDGSE EMCGNG+RCF++++ E + K F V T AG+I PE+ + G KVKV
Sbjct: 61 INSDGSEAEMCGNGIRCFSKYVFE-RGIVKKDKFKVETLAGIIEPELILNEYGLVEKVKV 119
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
+MG+P K D+P + D + + ++VDG ++ +T + MG PH V F
Sbjct: 120 NMGKPSFKRKDIP--MQGEPDSDAINTSIEVDGKEYKITSLLMGVPHTVLFVDD------ 171
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
V+K+++ +GPK E H VFP +TN FV++I + +K+R WERGAGAT ACGTG+CA V+
Sbjct: 172 VEKVDIYTLGPKIERHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATYACGTGSCASVI 231
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
A+ L G+ ER+ V L G L+IEW +ED V+MTGPAE VF G L
Sbjct: 232 ASNLNGYTERKANVHLYFGTLEIEW-QEDGTVFMTGPAEEVFVGEYL 277
>gi|402302073|ref|ZP_10821193.1| diaminopimelate epimerase [Selenomonas sp. FOBRC9]
gi|400381060|gb|EJP33864.1| diaminopimelate epimerase [Selenomonas sp. FOBRC9]
Length = 279
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 130/285 (45%), Positives = 176/285 (61%), Gaps = 16/285 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K+ G GNDF++VD EP A ++CDR+FGIGADG++ P + D M
Sbjct: 1 MEFTKWQGCGNDFVVVDFLER-EPVDFAALAVRMCDRHFGIGADGLMVVCPS-DTADIRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KVK 194
R FN DG+EPEMCGNG+RCFAR + E + K+ FT+ T AG++ P I G V+
Sbjct: 59 REFNPDGTEPEMCGNGIRCFARCLYEYGRIK-KEQFTIETLAGIMTPRIIRGGGKVTAVE 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG P+L D+P + + V+ + + V G ++ +TCVSMGNPH V F
Sbjct: 118 VDMGVPVLAGDDIP--VRGFGTERVIAAPITVAGEEYKMTCVSMGNPHAVIFVDD----- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ LAE+G +FE+H +FP + NTEFVEI S +MRVWERGAG TLACGTG CA +
Sbjct: 171 -AEHFPLAELGAQFENHELFPRKINTEFVEIKDRSHARMRVWERGAGITLACGTGTCATL 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
A VL +R +++ GG + +EW+ D H++MTGPAE VF G
Sbjct: 230 TAGVLNDLLDRAADIEVDGGVIRVEWR-ADGHIFMTGPAEPVFTG 273
>gi|225028432|ref|ZP_03717624.1| hypothetical protein EUBHAL_02706 [Eubacterium hallii DSM 3353]
gi|224954276|gb|EEG35485.1| diaminopimelate epimerase [Eubacterium hallii DSM 3353]
Length = 290
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 135/297 (45%), Positives = 184/297 (61%), Gaps = 21/297 (7%)
Query: 73 RRESGFLHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAAKLC-DRNFGIGADGVIFAMPG 130
RRE + F K HG+GND++ V N E I P + +K DR+FGIG+DG+I P
Sbjct: 4 RREQP-MKFTKMHGIGNDYVYV---NCFEESIKNPAEVSKFVSDRHFGIGSDGLILISPS 59
Query: 131 VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-D 189
D+ M I+N+DGS+ EMCGNG+RC A+++ + L K +V T AG+ ++Q +
Sbjct: 60 AKA-DFRMNIYNADGSQAEMCGNGIRCVAKYVYDY-GLTDKTEISVETLAGIKYLKLQVE 117
Query: 190 DGKV---KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTF 246
+GKV +V+MG PIL+ +P ++ N VV ++V G +++TCVSMGNPH + F
Sbjct: 118 NGKVATVEVNMGAPILEPKKIPVAVENN---PVVDVPVEVKGKTYHMTCVSMGNPHAIIF 174
Query: 247 GTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLAC 306
V +L++ IGP FE+H VFP RTNTEFVE++ + + MRVWERG+ TLAC
Sbjct: 175 MDN------VKELDIEAIGPYFENHPVFPKRTNTEFVEVLDKNTVNMRVWERGSDETLAC 228
Query: 307 GTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
GTGACA VA +L E TV L GG L I W ++N VYMTGPA VVF G + L
Sbjct: 229 GTGACATTVACILNNKTEDEVTVHLLGGDLKIRWDRKENLVYMTGPATVVFDGEITL 285
>gi|83589739|ref|YP_429748.1| diaminopimelate epimerase [Moorella thermoacetica ATCC 39073]
gi|123524732|sp|Q2RK34.1|DAPF_MOOTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|83572653|gb|ABC19205.1| diaminopimelate epimerase [Moorella thermoacetica ATCC 39073]
Length = 279
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 141/290 (48%), Positives = 177/290 (61%), Gaps = 15/290 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+HFVK HGLGNDF+LV+ P P A ++C R FGIGADG+I +P M
Sbjct: 1 MHFVKMHGLGNDFVLVNAMTEKVPGDLPGLARRVCHRRFGIGADGLILVLPS-EQARLRM 59
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK----VK 194
RIFN DGSEPEMCGNG+RCFAR++ E G++ V T AG+I P + +G V+
Sbjct: 60 RIFNPDGSEPEMCGNGIRCFARYVYETGLAEGEE-LQVETLAGIIKPRLILEGGRVAGVR 118
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG P L+ +P A V+ ++V+G W TCVSMGNPHCV F
Sbjct: 119 VDMGAPHLEREQIPM---AGTGSPVLDEPIEVNGETWRGTCVSMGNPHCVFFVED----- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V + +GP EHH +FP RTN EF+++++ +L+MRVWERGAG T+ACGTGACA
Sbjct: 171 -VTGAPVTTVGPVVEHHPLFPRRTNVEFIQVLNREELRMRVWERGAGETMACGTGACAAA 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VA L G + R+ TV L G L IEW DNHVYMTGPA VF G L+
Sbjct: 230 VAGALTGRSNRKVTVHLAAGDLQIEWSPVDNHVYMTGPAVEVFRGDFPLD 279
>gi|160892976|ref|ZP_02073764.1| hypothetical protein CLOL250_00513 [Clostridium sp. L2-50]
gi|156865059|gb|EDO58490.1| diaminopimelate epimerase [Clostridium sp. L2-50]
Length = 278
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 136/287 (47%), Positives = 178/287 (62%), Gaps = 18/287 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-AAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K GLGND++ ++ +E PE+ A + DR+FG+G+DGVI P + D+T
Sbjct: 1 MKFTKMEGLGNDYVYINC--FSEKVENPEKLAIAMSDRHFGVGSDGVILIKPS-DKADFT 57
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL-IVPEIQDDGKVK-- 194
M ++N+DGS EMCGNG+RC +++ + L K S +V T AG+ + + DGKV
Sbjct: 58 MDMYNADGSRSEMCGNGIRCVGKYVYDY-GLTDKTSISVETLAGIKYLDFVIKDGKVDMV 116
Query: 195 -VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG PILKA VP + ++K+Q V+ ++ V GV +++TCVSMGNPH V F
Sbjct: 117 TVDMGAPILKADQVP--VRSDKEQ-VIDEKITVAGVDYHMTCVSMGNPHAVMFVDD---- 169
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ L E GP FEHH VFP R N EFV++I +KMRVWERG G TLACGTGACA
Sbjct: 170 --TEHFPLEEAGPLFEHHEVFPNRVNAEFVQVIDRHTVKMRVWERGTGETLACGTGACAT 227
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
VA VL G + TV L GG L I + E+N VYMTGPA VVF G
Sbjct: 228 AVACVLNGKTDDEVTVKLLGGDLIIRFDRENNKVYMTGPARVVFDGE 274
>gi|168703359|ref|ZP_02735636.1| diaminopimelate epimerase [Gemmata obscuriglobus UQM 2246]
Length = 280
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 129/286 (45%), Positives = 172/286 (60%), Gaps = 16/286 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HGLGND++ VD P A + DR+FGIG+DG+I P D M
Sbjct: 1 MQFTKMHGLGNDYVYVDCVRQKPPADPAALARAVSDRHFGIGSDGLILICPS-EKADARM 59
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ----DDGKVK 194
R+FN+DGSE EMCGNGVRC A+F+ + + K + TG G++ +++ +V+
Sbjct: 60 RMFNADGSESEMCGNGVRCVAKFVHD-RGIATKPRLKIETGRGVLTLDLEVRAGKAERVR 118
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDG-VKWNVTCVSMGNPHCVTFGTKEGQN 253
V+MGEPIL+++ +PT+L V ++L W VTCVSMGNPH V +
Sbjct: 119 VNMGEPILESAKIPTTLPGAPP---VNAKLVCAAPTPWEVTCVSMGNPHAVIYCDD---- 171
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V K+ L ++GPK EH FP R N FV++ SP+++ MR WERG+G TLACGTGAC+V
Sbjct: 172 --VAKVELEQVGPKLEHAPEFPRRINVHFVQVHSPNEVTMRTWERGSGVTLACGTGACSV 229
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VA VL R+ LPGG L++EW E DN VYMTGPA VF G
Sbjct: 230 CVAGVLTHRTGRKLLAHLPGGDLELEWSETDNCVYMTGPATEVFTG 275
>gi|304437420|ref|ZP_07397379.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304369676|gb|EFM23342.1| diaminopimelate epimerase [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 279
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 133/286 (46%), Positives = 176/286 (61%), Gaps = 16/286 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K+ G GNDF++VD + EP A ++CDR+FG+GADG++ A P D M
Sbjct: 1 MKFSKWQGCGNDFVIVDFLDH-EPVDFAVLAREMCDRHFGVGADGLMAACPS-ETADVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE-IQDDG---KVK 194
R FN DG+EPEMCGNG+RCF+R++ E E K FTV T AG +VP I DG V
Sbjct: 59 REFNPDGTEPEMCGNGIRCFSRWLYE-EGYVTKDEFTVETLAGTMVPRVIVQDGTVSAVA 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG P+L+ + +P ++ + VV + V G ++ +TCVSMGNPHCV F
Sbjct: 118 VDMGIPVLEGARIP--VAGFGTERVVAQPITVAGKEYAMTCVSMGNPHCVVFVDD----- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
D L ++G +FEHH+ FP R NTEFVE+ +MRVWERGAG TLACGTG CA +
Sbjct: 171 -ADGFPLKQLGAQFEHHAAFPNRINTEFVEVRDRRHARMRVWERGAGITLACGTGTCATL 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
A VL +R +++ GG + + W+ ED H+ MTGPAE VF G
Sbjct: 230 TAGVLNDVLDREAAIEVDGGVIHVAWR-EDGHIVMTGPAEQVFTGE 274
>gi|374386025|ref|ZP_09643526.1| diaminopimelate epimerase [Odoribacter laneus YIT 12061]
gi|373224559|gb|EHP46897.1| diaminopimelate epimerase [Odoribacter laneus YIT 12061]
Length = 306
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 130/287 (45%), Positives = 177/287 (61%), Gaps = 17/287 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G+GND++ + I P+ A + DR+FG+G+DG+I P + D+ M
Sbjct: 25 LKFTKMQGIGNDYVYLYGMGDALGDI-PQLARIISDRHFGVGSDGLILIDPS-DEADFRM 82
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL----IVPEIQDDGKVK 194
R+FN+DGSE MCGNG RC +++ + + K + T AG+ + PE + +VK
Sbjct: 83 RMFNADGSESPMCGNGSRCVGKYVYD-KGYTHKTEIKLETAAGIKLLTLFPEKGEVKRVK 141
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMGEP L++ +P + + VV + + +TCVSMGNPH V F +
Sbjct: 142 VDMGEPELRSDRIPVAFEG---EQVVNLPFRLREKIFYITCVSMGNPHAVLFVPE----- 193
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V ++ + +GP E H FP RTN EFVE+ISP +LKMRVWERG+G T ACGTGACA +
Sbjct: 194 -VREIEVKTLGPALELHPFFPRRTNIEFVEVISPVELKMRVWERGSGETFACGTGACASL 252
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VAAVL G +ER+ TV L GG L+IEW +DNHVYMTG AE+VF G +
Sbjct: 253 VAAVLNGKSERKVTVHLLGGELEIEWG-KDNHVYMTGGAEIVFEGEI 298
>gi|410664903|ref|YP_006917274.1| diaminopimelate epimerase [Simiduia agarivorans SA1 = DSM 21679]
gi|409027260|gb|AFU99544.1| diaminopimelate epimerase [Simiduia agarivorans SA1 = DSM 21679]
Length = 276
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 130/287 (45%), Positives = 170/287 (59%), Gaps = 19/287 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
L F K HGLGNDF+++D S R+TPE+ +L DR FG+G D V I P D+
Sbjct: 3 LRFTKMHGLGNDFVMIDAI-SQRVRLTPEKVRQLADRRFGVGCDQVLIVEEPTSPDVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI+N+DGSE E CGNG RCFA F+ E L GKQS V T AG++ I D KV+VDM
Sbjct: 62 YRIYNADGSEVENCGNGARCFANFVRE-RKLTGKQSIVVQTAAGVMTLNIADGDKVQVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P+L VP + ++ ++ DG +W V+ VSMGNPHCV L VD
Sbjct: 121 GAPVL----VPAQVPFQANEQAATYAIEADGQQWQVSAVSMGNPHCV---------LVVD 167
Query: 258 KLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+A +GP E H FP + N F++I+S ++ +RV+ERGAG TLACGTGACA V
Sbjct: 168 DTETAPVATLGPVLEAHPSFPNKANVGFMQILSRREINLRVYERGAGETLACGTGACAAV 227
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA L + V+LPGG L I+W+ ++ V MTGP VF+G +
Sbjct: 228 VAGRLRDLLDSDVVVNLPGGSLTIQWQGGEHPVVMTGPTAHVFHGQI 274
>gi|206890939|ref|YP_002248958.1| diaminopimelate epimerase [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206742877|gb|ACI21934.1| diaminopimelate epimerase [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 279
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/283 (47%), Positives = 175/283 (61%), Gaps = 13/283 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
++FVK HGLGNDFIL+D + P+ E A C+R FGIGAD ++ P D+ M
Sbjct: 4 INFVKMHGLGNDFILIDCLKNDLPK-PQEFAIHYCNRRFGIGADQLLLLYPS-QIADFKM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
+IFN+DGSE EMCGNG+RCFA++I + L+ K V T AG+I P+ + V+VDMG
Sbjct: 62 KIFNADGSEVEMCGNGIRCFAKYIWD-RGLSNKDVLEVETLAGIIKPKKVGE-LVQVDMG 119
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
+P + +P + + S L+V G + CVSMGNPH V F +E +N V K
Sbjct: 120 KPEFHPNKIPVDVEGD---SAFDLMLEVSGWHARINCVSMGNPHAVIFLDEEPKNFAVTK 176
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
GP E+H +FP RTN EF + + S++ MRVWERGAG TLACGTGACA VAA+
Sbjct: 177 Y-----GPLIENHPIFPKRTNVEFAYVKNSSEIVMRVWERGAGETLACGTGACATAVAAM 231
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
++ ++ TV L GG L IEW D HVYMTGPA+ VF G V
Sbjct: 232 VKEFTNKKVTVHLLGGDLLIEWA-ADGHVYMTGPAQEVFEGVV 273
>gi|291520212|emb|CBK75433.1| diaminopimelate epimerase [Butyrivibrio fibrisolvens 16/4]
Length = 277
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/289 (45%), Positives = 174/289 (60%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG GND++ V N E ++ E + K+ DR+FGIG+DG+I P + D+
Sbjct: 1 MKFTKMHGCGNDYVYV---NLFEEKVENPAEVSIKVSDRHFGIGSDGLITIGPS-DKADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAG----LIVPEIQDDGK 192
M I+N+DGSE EMCGNG+RC A+++ + +L TV TGAG ++ PE +
Sbjct: 57 RMHIYNADGSEAEMCGNGIRCVAKYVYD-HHLTDNTEITVETGAGVLTLILFPENGKVQQ 115
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V+VDMGEPI +++P +K V+ ++V G WN+TCVSMGNPH V F
Sbjct: 116 VRVDMGEPIHTPAEIPVVADGDK---VIDEPIEVGGKTWNMTCVSMGNPHAVVFVDDTAS 172
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
L GP FE+H FP RTNTEFV+IIS ++ MRVWERG+ T ACGTG CA
Sbjct: 173 ------FPLETYGPLFENHERFPKRTNTEFVQIISRTEANMRVWERGSAETWACGTGTCA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V+A +L G E + V L GG L IE+ E NHV+MTGPA VF G +
Sbjct: 227 CVMACILNGKTEDKVLVHLRGGDLTIEYDRESNHVFMTGPATEVFSGEI 275
>gi|255282869|ref|ZP_05347424.1| diaminopimelate epimerase [Bryantella formatexigens DSM 14469]
gi|255266643|gb|EET59848.1| diaminopimelate epimerase [Marvinbryantia formatexigens DSM 14469]
Length = 277
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/290 (43%), Positives = 186/290 (64%), Gaps = 18/290 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLC-DRNFGIGADGVIFAMPGVNGTDYT 137
+ F K HG+GND++ V+ T PE+ A L DR+FGIG+DG+I P + D
Sbjct: 1 MKFTKMHGIGNDYVYVNCFKETVE--DPEKTAILVSDRHFGIGSDGLILIKPS-SVADGK 57
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV--- 193
M ++N+DGS+ MCGNG+RC A+++ + + K S +V T +G+ ++ ++GKV
Sbjct: 58 MEMYNADGSQGAMCGNGIRCVAKYMYDY-GITDKTSISVETKSGIKYLDLTVENGKVSAV 116
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+V+MG P+L+A+ +P + ++ ++V+ + V+G +W +TCVSMGNPH VT+
Sbjct: 117 RVNMGSPVLQAAAIP---AVSEKETVIDEPVTVNGREWRLTCVSMGNPHAVTYVED---- 169
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V L++ +IGP+FEHH +FP R NTEF +I ++MRVWERG+G TLACGTGACA
Sbjct: 170 --VKHLDIEKIGPEFEHHPMFPDRVNTEFAHVIDRHTVEMRVWERGSGETLACGTGACAT 227
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA+VL G+ E TV L GG L I W ++N+VYMTG A VF G + L
Sbjct: 228 AVASVLNGYTEDEVTVKLLGGDLKIFWDRKENNVYMTGSATTVFDGEIAL 277
>gi|153852916|ref|ZP_01994353.1| hypothetical protein DORLON_00335 [Dorea longicatena DSM 13814]
gi|149754558|gb|EDM64489.1| diaminopimelate epimerase [Dorea longicatena DSM 13814]
Length = 282
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 132/289 (45%), Positives = 183/289 (63%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K GLGND++ V N E +I P A + DR+FGIG+DG+I P D+
Sbjct: 1 MKFTKMQGLGNDYVYV---NCFEEKIENPPAVARYVSDRHFGIGSDGLIMINPS-EVADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
M ++N+DGS EMCGNG+RC A+++ + L K +V T G+ ++ +DGKV
Sbjct: 57 EMEMYNADGSRGEMCGNGIRCVAKYVYDY-GLTDKTQISVETLGGIKYLDLTVEDGKVVL 115
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
KVDMG+P LK+ +P ++++ V+ ++VDG +++T VSMGNPH V +
Sbjct: 116 VKVDMGKPELKSDLIPI---ISENEKVIDEPIEVDGQVYHMTGVSMGNPHTVIYVDD--- 169
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V L+L +IGPKFE+H FP R NTEFV I + ++MRVWERG+G TLACGTGACA
Sbjct: 170 ---VKNLDLEKIGPKFENHERFPKRINTEFVHCIDRNTVEMRVWERGSGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V VA++L + R TV L GG L IEW ++ NHV+MTGPA+VVF G +
Sbjct: 227 VAVASILNNLTDTRVTVKLLGGDLQIEWDQKKNHVFMTGPAKVVFDGVI 275
>gi|332296028|ref|YP_004437951.1| diaminopimelate epimerase [Thermodesulfobium narugense DSM 14796]
gi|332179131|gb|AEE14820.1| Diaminopimelate epimerase [Thermodesulfobium narugense DSM 14796]
Length = 282
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/290 (46%), Positives = 175/290 (60%), Gaps = 17/290 (5%)
Query: 79 LHFVKYHGLGNDFILV--DNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG GNDF+++ + E E + KLCDR+FGIG+DG+I +P D
Sbjct: 1 MKFYKMHGTGNDFVMLLPEESKYVESNNPLEISKKLCDRHFGIGSDGLILMLPS-EKADL 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDDGK-- 192
MRIFN+DGSE EMCGNG+RCFA+ ++ N+ K V T AG+IVPEI DD
Sbjct: 60 KMRIFNADGSEAEMCGNGIRCFAKLAKDM-NIVNKDKIEVETLAGIIVPEIIRSDDKNSL 118
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDV-DGVKWNVTCVSMGNPHCVTFGTKEG 251
++V+MG P LK +P KD SV+ + + D NVTCVSMGNPHCV F +
Sbjct: 119 IRVNMGTPNLKPESIPILGFEGKD-SVINQRIQINDKTFLNVTCVSMGNPHCVIFMDYDI 177
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+N ++ I P+ EH + FP +TN EF +IS S +++RVWERG G TLACGTGAC
Sbjct: 178 KNFPIEG-----IAPEVEHSAWFPKKTNVEFARVISKSDIELRVWERGVGETLACGTGAC 232
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
A VAA L G + LPGG L IE+ E N+V+MT A +VF G +
Sbjct: 233 ATAVAAKLNGFTNGNVNIHLPGGILHIEY--ETNNVFMTATATLVFEGII 280
>gi|210617578|ref|ZP_03291634.1| hypothetical protein CLONEX_03858 [Clostridium nexile DSM 1787]
gi|210149243|gb|EEA80252.1| hypothetical protein CLONEX_03858 [Clostridium nexile DSM 1787]
Length = 289
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 128/289 (44%), Positives = 180/289 (62%), Gaps = 16/289 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K GLGND++ V+ T PE A K+ +RNFGIG+DG+I P + D+ M
Sbjct: 13 MKFTKMQGLGNDYVYVNCFKETIEN-PPEMAKKVSNRNFGIGSDGLIMINPS-DVADFEM 70
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKVK--- 194
++N+DGS EMCGNG+RC +++ + L K+ +V T AG+ ++ +DGKVK
Sbjct: 71 EMYNADGSRSEMCGNGIRCVGKYVYDY-GLTEKEHISVETLAGIKYLDLTVEDGKVKLVK 129
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG P L ++P N+ V+ ++V+G ++ +T VSMGNPH V +
Sbjct: 130 VDMGSPELVPENIPIVADGNR---VIDEPINVNGTEYRMTGVSMGNPHAVVYVED----- 181
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V L++ IGP FE+H FP R NTEFV+++ + ++MRVWERG+G T+ACGTGACAV
Sbjct: 182 -VKGLDIETIGPAFENHERFPNRVNTEFVKVLDRNTVEMRVWERGSGETMACGTGACAVA 240
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA +L G E + TV L GG L IEW +E + +YMTGPAEV F G + L
Sbjct: 241 VACILNGFTEDKVTVKLLGGDLQIEWDKEADKIYMTGPAEVSFDGEINL 289
>gi|222530081|ref|YP_002573963.1| diaminopimelate epimerase [Caldicellulosiruptor bescii DSM 6725]
gi|222456928|gb|ACM61190.1| diaminopimelate epimerase [Caldicellulosiruptor bescii DSM 6725]
Length = 278
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 128/287 (44%), Positives = 179/287 (62%), Gaps = 17/287 (5%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F K HGLGNDFI++D R + A K+C R+ G+GADG++ + D MRI
Sbjct: 3 FSKMHGLGNDFIVIDARGKEDIDYNL-LAKKMCHRHIGVGADGILLVLDS-KLADIRMRI 60
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE--IQDDG---KVKV 195
NSDGSE EMCGNG+RCFA+++ E + F V T AG+I PE + + G KVKV
Sbjct: 61 INSDGSEAEMCGNGIRCFAKYVFE-RGIVKSTKFKVETLAGIIEPELFVNEYGLVDKVKV 119
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
+MG+P K D+P + + + + + VDG ++ +T + MG PH + F
Sbjct: 120 NMGKPSFKREDIP--MQGDPKSDAINTSIVVDGNEYRITSLLMGVPHTILFVDD------ 171
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
++K+++ +GPK E H VFP +TN FV++I + +K+R WERGAGAT ACGTG+CA V+
Sbjct: 172 LEKVDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVI 231
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
AA L G+AER+ +V L G L+IEW ++D V+MTGPAE VF G L
Sbjct: 232 AANLNGYAERKASVHLYFGILEIEW-QDDGIVFMTGPAEEVFVGEYL 277
>gi|386811250|ref|ZP_10098476.1| diaminopimelate epimerase [planctomycete KSU-1]
gi|386405974|dbj|GAB61357.1| diaminopimelate epimerase [planctomycete KSU-1]
Length = 279
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 131/286 (45%), Positives = 179/286 (62%), Gaps = 15/286 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HG+GND+I + N E + + A ++ DR+FGIG+DG+I +P D M
Sbjct: 1 MRFTKMHGIGNDYIYI-NCFEEEVKEPAKLAPRMSDRHFGIGSDGIILILPSTV-ADCKM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-QDDGKV---K 194
RIFN+DGSE +MCGNGVRC A++I + N+ TV T AG+ E+ D+G+V K
Sbjct: 59 RIFNADGSEAQMCGNGVRCVAKYIYD-HNITRNNPLTVETVAGIKSIELFTDNGRVSGAK 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDV-DGVKWNVTCVSMGNPHCVTFGTKEGQN 253
V+MG+P L S++P K+ SV+ L + +G+ W +TCVSMGNPH + F
Sbjct: 118 VNMGKPRLLRSEIPMLGKEIKETSVIDELLTISNGISWRITCVSMGNPHGIIFVDN---- 173
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+D +N+++ G + EHH VFP R N FV++ +P ++ MR WERG+G TLACGTGA AV
Sbjct: 174 --LDLVNISKHGIEIEHHPVFPERINVHFVQVHNPKEVTMRTWERGSGITLACGTGASAV 231
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VA VL ER+ LPGG L +EW E+ N VYMTGPA VF G
Sbjct: 232 CVAGVLNKKTERKILAHLPGGDLKLEWAEDGN-VYMTGPAAEVFTG 276
>gi|260434560|ref|ZP_05788530.1| diaminopimelate epimerase [Synechococcus sp. WH 8109]
gi|260412434|gb|EEX05730.1| diaminopimelate epimerase [Synechococcus sp. WH 8109]
Length = 366
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 128/291 (43%), Positives = 175/291 (60%), Gaps = 22/291 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRIT----PEQAAKLCDRNFGIGADGVIFAMPGVNG 133
L F KY GLGNDF++++ R P P +++CDR FG+G DG+I A+P
Sbjct: 1 MLQFSKYQGLGNDFLILEGRQGQLPDSISDPDPAWVSRICDRRFGVGGDGLILALPPQAE 60
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKV 193
+ MRI N+DGSE EMCGNG+RC AR++A+ + + + + T AG+I PE+ D ++
Sbjct: 61 GELRMRILNADGSEAEMCGNGIRCLARYLADTDGDAPGRRWDIETLAGMIRPELMADRQL 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+VDMG P L +PT++ + + + L ++ + V V MGNPH V
Sbjct: 121 RVDMGPPFLTPEAIPTTVM--PEDGLPQGVLLLEDEQIRVASVGMGNPHVV--------- 169
Query: 254 LKVDKLNLAEI-----GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
+ VD +LA I G E H FPA+TN F+++ S +L++RVWERGAG TLACGT
Sbjct: 170 VPVD--DLASIPFDTWGAALEVHPAFPAKTNVHFLQVHSRERLEIRVWERGAGPTLACGT 227
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
GACA +VAAVL G A+ V LPGGPL IEW++ V MTGPAE VF G
Sbjct: 228 GACATLVAAVLLGLADDCAEVVLPGGPLMIEWRDRSGSVLMTGPAEAVFDG 278
>gi|336428591|ref|ZP_08608571.1| diaminopimelate epimerase [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336005299|gb|EGN35346.1| diaminopimelate epimerase [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 284
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 129/288 (44%), Positives = 180/288 (62%), Gaps = 16/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT-PEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
++F K G GND++ ++ P+ P+ K+ DR+FGIG DGVIF P D+
Sbjct: 3 INFTKMQGCGNDYVYINGFTEIIPQQQKPDFVRKMSDRHFGIGGDGVIFVNPS-QTADFE 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KV 193
M ++N+DG+ EMCGNG+RC +F+ + + L K+ V + + ++ +G V
Sbjct: 62 MEMYNADGTRAEMCGNGIRCVGKFVYD-KGLTDKKDIRVESFGKVKYLQLLTEGGTVKNV 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+V+MGEPILKA +VP + +K+Q+V + + V+G + +TCVSMGNPH V +
Sbjct: 121 RVNMGEPILKAEEVP--VVCDKEQAVSEPVV-VEGKTYEMTCVSMGNPHAVVYMED---- 173
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V L + +IGP FE+H FP R NTEFV+++ + ++MRVWERG G TLACGTG CAV
Sbjct: 174 --VAGLAIEKIGPFFENHPRFPRRVNTEFVKVLDKNTVEMRVWERGTGETLACGTGCCAV 231
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA VL G R+ TV + GG LDIEW+E N VYMTGPA VF GSV
Sbjct: 232 AVACVLNGLTGRKVTVKVLGGQLDIEWEERTNLVYMTGPAVTVFEGSV 279
>gi|238927507|ref|ZP_04659267.1| diaminopimelate epimerase [Selenomonas flueggei ATCC 43531]
gi|238884789|gb|EEQ48427.1| diaminopimelate epimerase [Selenomonas flueggei ATCC 43531]
Length = 279
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 131/286 (45%), Positives = 176/286 (61%), Gaps = 16/286 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K+ G GNDF++VD + EP A ++CDR+FG+GADG++ A P D M
Sbjct: 1 MKFSKWQGCGNDFVIVDFLDH-EPVDFAVLAREMCDRHFGVGADGLMAACPS-ETADVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE-IQDDG---KVK 194
R FN DG+EPEMCGNG+RCF+R++ E + K FTV T AG +VP I DG V
Sbjct: 59 REFNPDGTEPEMCGNGIRCFSRWLYE-QGYVTKDEFTVETLAGTMVPHVIVQDGTVSAVA 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG P+L+ + +P ++ + VV + V G ++ +TCVSMGNPHCV F
Sbjct: 118 VDMGIPVLEGARIP--VAGFGTEHVVAQPIMVAGKEYAMTCVSMGNPHCVVFVDD----- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
D L ++G +FEHH+ FP + NTEFVE+ +MRVWERGAG TLACGTG CA +
Sbjct: 171 -ADGFPLEKLGAQFEHHTAFPHKINTEFVEVRDRRHARMRVWERGAGITLACGTGTCATL 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
A VL +R +++ GG + + W+ ED H+ MTGPAE VF G
Sbjct: 230 TAGVLNNVLDREAAIEVDGGVIHVAWR-EDGHIVMTGPAEQVFTGE 274
>gi|344997103|ref|YP_004799446.1| diaminopimelate epimerase [Caldicellulosiruptor lactoaceticus 6A]
gi|343965322|gb|AEM74469.1| Diaminopimelate epimerase [Caldicellulosiruptor lactoaceticus 6A]
Length = 278
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 126/287 (43%), Positives = 179/287 (62%), Gaps = 17/287 (5%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F K HGLGNDFI++D R + A ++C R+ G+GADG++ + D MRI
Sbjct: 3 FSKMHGLGNDFIVIDARGKEDIDYNS-LAKRMCHRHIGVGADGLLLVLDS-KLADIRMRI 60
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDDG---KVKV 195
NSDGSE EMCGNG+RCF++++ E + K F V T AG+I PE+ + G KVKV
Sbjct: 61 INSDGSEAEMCGNGIRCFSKYVFE-RGIVKKDKFKVETLAGIIEPELILNEYGLVEKVKV 119
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
+MG+P K D+P + + + + + ++VDG ++ +T + MG PH V F
Sbjct: 120 NMGKPSFKRKDIP--MQGDPESDAINTSIEVDGKEYKITSLLMGVPHTVLFVDD------ 171
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
V+K+++ +GPK E H VFP +TN FV++I + +K+R WERGAGAT ACGTG+CA V+
Sbjct: 172 VEKVDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATYACGTGSCASVI 231
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
A+ L G+ ER+ V L G L+IEW ++ V+MTGPAE VF G L
Sbjct: 232 ASNLNGYTERKANVHLYFGTLEIEW-QDSGTVFMTGPAEEVFVGEYL 277
>gi|389581645|ref|ZP_10171672.1| diaminopimelate epimerase [Desulfobacter postgatei 2ac9]
gi|389403280|gb|EIM65502.1| diaminopimelate epimerase [Desulfobacter postgatei 2ac9]
Length = 283
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 137/292 (46%), Positives = 174/292 (59%), Gaps = 24/292 (8%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG+GNDFI++D+R+ T + A +LC R FGIGADG+I A + D
Sbjct: 3 IDFWKMHGIGNDFIMLDDRDKTIAGYIDYSDLAVRLCHRRFGIGADGIILARHS-DTHDI 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
I NSDGSEPEMCGNG+RCFA+++ E N+ K V T AG +VP I+
Sbjct: 62 RFIIINSDGSEPEMCGNGMRCFAKYLYE-NNILVKDEIKVQTLAGTVVPRIEKKQSGQVV 120
Query: 193 -VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
V VDMG P L +P ++D ++ G V+CVSMGNPH V F
Sbjct: 121 SVCVDMGVPRLVPQQIP--FVHDRDMALGVPIETAQGTML-VSCVSMGNPHAVIF----- 172
Query: 252 QNLKVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
V+ L+L +I GP E+H FP +TN EF+E++S QLKMRVWERGAG TLACGT
Sbjct: 173 ----VNDLSLVDIETIGPMVENHPRFPEKTNVEFIEVVSDRQLKMRVWERGAGITLACGT 228
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
GACA V AA L G A R+ V+L GG LDI W E H++ TGPA+ VF G+
Sbjct: 229 GACAAVTAAHLTGRAGRQVRVNLDGGDLDISWNESSGHIFKTGPAQTVFKGT 280
>gi|334134803|ref|ZP_08508305.1| diaminopimelate epimerase [Paenibacillus sp. HGF7]
gi|333607647|gb|EGL18959.1| diaminopimelate epimerase [Paenibacillus sp. HGF7]
Length = 278
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 129/288 (44%), Positives = 170/288 (59%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K +GLGNDFI++ P E A + C+R FGIGADG++F +P D M
Sbjct: 1 MEFTKMNGLGNDFIVLSGYKEL-PENVAELAVRWCNRYFGIGADGLVFILPS-EKADVQM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT-GAGL----IVPEIQDDGKV 193
RI NSDGSEPE CGN +RC A+++ + + +++ TV T GAG+ + E +
Sbjct: 59 RIINSDGSEPEQCGNAIRCVAKYVYD-RDPGKREAITVETRGAGVQQVHVTAEKGIAKAI 117
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+VDMGEP+L+ ++PT++ A + V+ ++ G + T VSMGNPHCV
Sbjct: 118 RVDMGEPVLQGLEIPTTIDAER---VIDQPIEAGGRTFTFTAVSMGNPHCVI------DV 168
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+LA GP E H +FP + N EFV + S MRVWERGAG TLACGTGACA
Sbjct: 169 EDAPSFDLAAWGPLLEQHPLFPNKANVEFVTVRSRDYADMRVWERGAGPTLACGTGACAT 228
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+VA VL G +R T+ L GG L IEW E DN VYMTGPA V+ G V
Sbjct: 229 LVALVLTGKTDRTATISLKGGDLLIEWNEADNRVYMTGPAAEVYKGKV 276
>gi|39995638|ref|NP_951589.1| diaminopimelate epimerase [Geobacter sulfurreducens PCA]
gi|409911096|ref|YP_006889561.1| diaminopimelate epimerase [Geobacter sulfurreducens KN400]
gi|39982401|gb|AAR33862.1| diaminopimelate epimerase [Geobacter sulfurreducens PCA]
gi|307634712|gb|ADI83383.2| diaminopimelate epimerase [Geobacter sulfurreducens KN400]
Length = 282
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 183/292 (62%), Gaps = 20/292 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAA-KLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG GND++ V N E + PEQ A K+ +RNFGIG+DG+I MP + D
Sbjct: 1 MKFTKMHGAGNDYVYV---NCFEETVGNPEQTAIKVSNRNFGIGSDGLILIMPS-DKADV 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDDGKV- 193
MR+FNSDGSE EMCGNG+RC A++ + + K+ T TGAG++ ++ DG+V
Sbjct: 57 RMRMFNSDGSESEMCGNGIRCVAKYAYD-HGIVTKKEITAETGAGVLTLQLFTGADGRVD 115
Query: 194 --KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
+V+MG+P L +++P L D VV L++ +N+TCVSMGNPHCV F +
Sbjct: 116 RVRVNMGKPRLTRAEIPM-LGDPGDGQVVGQPLNILHTTFNITCVSMGNPHCVIF-VDDV 173
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+N +V+K GP E+H +FP RTN EFV+IIS ++++ R WERGAG TLACGTGA
Sbjct: 174 ENFQVEKY-----GPLIENHEMFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGAS 228
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
AV VA L G E+ L GG L++EW ED +YMTGPA VF G + L
Sbjct: 229 AVCVAGALNGLTEKNILNHLSGGDLELEWA-EDGFLYMTGPATEVFSGEINL 279
>gi|317131895|ref|YP_004091209.1| diaminopimelate epimerase [Ethanoligenens harbinense YUAN-3]
gi|315469874|gb|ADU26478.1| diaminopimelate epimerase [Ethanoligenens harbinense YUAN-3]
Length = 281
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/290 (45%), Positives = 186/290 (64%), Gaps = 22/290 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAK-LCDRNFGIGADGVIFAMPGVNGTDYT 137
LHF K G+GND++ ++ + P P +K + DR+FGIG+DG+I +P D
Sbjct: 3 LHFYKMQGIGNDYVYINAMETKVP--NPSALSKTVSDRHFGIGSDGLILLLPSTVA-DVR 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKVK-- 194
M++FN+DGSE +MCGNG+RC + EL ++ +S TV T +G+ ++Q +DGKV
Sbjct: 60 MQMFNADGSEGKMCGNGIRCVGKLAYEL-DICKSESMTVETLSGIKTLKLQVEDGKVSSV 118
Query: 195 -VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG P ++ +P + ++ +V++ L V+G ++VTCVSMGNPH V F +G
Sbjct: 119 CVDMGSPSMEIEKIPVRYT---ERRMVEAPLTVNGTTYSVTCVSMGNPHAVIF--TDG-- 171
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+D++ L +IGP+FEHH +FP NTEFVE + LKMRVWERG+G TLACGTGACAV
Sbjct: 172 --IDEMELEKIGPQFEHHEIFPESVNTEFVEALGDHLLKMRVWERGSGETLACGTGACAV 229
Query: 314 VVAAVLEGHAERRCTVD--LPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VVAA L R VD L GG L I W +++ V+MTGPAE+V+ G +
Sbjct: 230 VVAACLTKRCPRGEDVDVLLRGGKLTIRW--DNDRVWMTGPAELVYTGDI 277
>gi|167768012|ref|ZP_02440065.1| hypothetical protein CLOSS21_02555 [Clostridium sp. SS2/1]
gi|317498394|ref|ZP_07956689.1| diaminopimelate epimerase [Lachnospiraceae bacterium 5_1_63FAA]
gi|167710341|gb|EDS20920.1| diaminopimelate epimerase [Clostridium sp. SS2/1]
gi|291561014|emb|CBL39814.1| diaminopimelate epimerase [butyrate-producing bacterium SSC/2]
gi|316894288|gb|EFV16475.1| diaminopimelate epimerase [Lachnospiraceae bacterium 5_1_63FAA]
Length = 283
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/291 (45%), Positives = 184/291 (63%), Gaps = 19/291 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT-PEQAAK-LCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG GND++ V N E +I P + AK + DR+FGIG+DG+I P + D+
Sbjct: 1 MKFTKMHGCGNDYVYV---NCLEEKINNPNKVAKFISDRHFGIGSDGMICICPS-DKADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
M ++NSDGSE MCGNGVRC A+++ + L K + T+ T G+ ++ +DGKV
Sbjct: 57 RMAMYNSDGSEGAMCGNGVRCIAKYVYDY-GLTDKTTITIETKGGIKELDLTVEDGKVTW 115
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
KVDM PI KAS +P ++ + D+ V+ + VDG ++N+TC+SMGNPH V F
Sbjct: 116 VKVDMEAPITKASQIP-AIYDDLDE-VIDQPVIVDGKEYNITCISMGNPHGVVFVDS--- 170
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V +++ +IGPKFE+H +FP R NTEF+E++ +KMRVWERGAG TLACGTGACA
Sbjct: 171 ---VADIDIEKIGPKFENHPMFPDRVNTEFIELVDDKTIKMRVWERGAGETLACGTGACA 227
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A+ L ++ V L GG L IE+ EE + ++MTGPA VF G + L
Sbjct: 228 SAYASYLNKKTGKKVLVHLLGGDLQIEYDEEKDTIFMTGPATTVFDGEIDL 278
>gi|404497840|ref|YP_006721946.1| diaminopimelate epimerase [Geobacter metallireducens GS-15]
gi|418067876|ref|ZP_12705206.1| diaminopimelate epimerase [Geobacter metallireducens RCH3]
gi|78195440|gb|ABB33207.1| diaminopimelate epimerase [Geobacter metallireducens GS-15]
gi|373558055|gb|EHP84420.1| diaminopimelate epimerase [Geobacter metallireducens RCH3]
Length = 282
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 135/292 (46%), Positives = 184/292 (63%), Gaps = 20/292 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAA-KLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG GND++ V N E R+ PEQ A K+ +RNFGIG+DG+I MP + D
Sbjct: 1 MKFTKMHGAGNDYVYV---NCFEERVDNPEQVAIKVSNRNFGIGSDGLILIMPS-DKADV 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDDGK-- 192
MR+FNSDGSE EMCGNG+RC A++ A + K+ T TGAG++ ++ DGK
Sbjct: 57 RMRMFNSDGSESEMCGNGIRCVAKY-AYDHGIVSKKEITAETGAGILTLQLVPGADGKIE 115
Query: 193 -VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
V+V+MG P LK +++P + D +V L++ +N+TCVSMGNPHCV F +
Sbjct: 116 KVRVNMGVPRLKRAEIPMA-GEPADGQIVSQPLNILHTTFNITCVSMGNPHCVIF-VDDV 173
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
++ +V+K GP E+H +FP RTN EFV+IIS ++++ R WERGAG TLACGTGA
Sbjct: 174 ESFQVEKY-----GPLIENHELFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGAS 228
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
AV VA L E++ L GG L++EW +D +YMTGPA VF G + L
Sbjct: 229 AVCVAGALNCLTEKKILNHLSGGDLELEWA-DDGFLYMTGPATEVFSGEIDL 279
>gi|312897415|ref|ZP_07756839.1| diaminopimelate epimerase [Megasphaera micronuciformis F0359]
gi|310621476|gb|EFQ05012.1| diaminopimelate epimerase [Megasphaera micronuciformis F0359]
Length = 280
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/287 (45%), Positives = 174/287 (60%), Gaps = 17/287 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ FVK HGLGNDF+ ++++ + T A +C+R+ GIGADG+I + D M
Sbjct: 1 MDFVKMHGLGNDFVFIEDKTGQDKDYTA-LARAMCNRHTGIGADGLIVIVDS-RVADVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ--DDGKVK-- 194
RI NSDGSE EMCGNG+RCFA+++ + + KQ FTV T AG++ PEI D K K
Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYVYDSGIIEKKQ-FTVETPAGIMEPEITVGADNKAKLI 117
Query: 195 -VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
++MG P S++P D V+ +L VDG W VT + MG PH VT+
Sbjct: 118 TINMGRPSFNRSEIPME---GADGRVLNEDLCVDGENWKVTSLLMGVPHTVTYVDD---- 170
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
VD +++ +IGP FE H FP TN F + + +K+R WERGAGATLACGTG+C+V
Sbjct: 171 --VDTVDIEKIGPLFEKHEAFPKHTNINFAQQMDDRTVKVRTWERGAGATLACGTGSCSV 228
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
VA+ L G R + LP G L IE++EED +VYMTGPA V F G+
Sbjct: 229 AVASFLNGRTGREVDIQLPLGTLHIEYREEDGNVYMTGPAAVSFTGT 275
>gi|302872514|ref|YP_003841150.1| diaminopimelate epimerase [Caldicellulosiruptor obsidiansis OB47]
gi|302575373|gb|ADL43164.1| diaminopimelate epimerase [Caldicellulosiruptor obsidiansis OB47]
Length = 278
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 125/287 (43%), Positives = 179/287 (62%), Gaps = 17/287 (5%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F K HGLGNDFI++D R + A K+C R+ G+GADG++ + D MRI
Sbjct: 3 FSKMHGLGNDFIVIDARGKEDIDYNL-LAKKMCHRHIGVGADGILLVLDS-KLADIRMRI 60
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDDG---KVKV 195
NSDGSE EMCGNG+RCF++++ E + K F V T AG+I P++ D G KV+V
Sbjct: 61 INSDGSEAEMCGNGIRCFSKYVFE-RGIVKKDKFKVETLAGIIEPQLILNDYGLVEKVRV 119
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
+MG+P K D+P + + + + + ++V+G ++ +T + MG PH V F
Sbjct: 120 NMGKPSFKRKDIP--MQGDPESDAINTSIEVEGKEYKITSLLMGVPHTVLFVDD------ 171
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
V+K+++ +GPK E H VFP +TN FV++I + +K+R WERGAGAT ACGTG+CA V+
Sbjct: 172 VEKVDIYTLGPKIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVI 231
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
A+ L G E++ V L G L+IEW ++D V+MTGPAE VF G L
Sbjct: 232 ASNLNGFTEKKVNVHLYFGMLEIEW-QDDGTVFMTGPAEEVFVGEYL 277
>gi|212551077|ref|YP_002309394.1| diaminopimelate epimerase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|254767088|sp|B6YS11.1|DAPF_AZOPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|212549315|dbj|BAG83983.1| diaminopimelate epimerase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 275
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/286 (44%), Positives = 174/286 (60%), Gaps = 18/286 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-AAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K HG GND+I +D E PE+ A +L DR+ GIG+DG++ MP + +
Sbjct: 1 MKFTKMHGAGNDYIYIDC--FKEKIDCPEELAIRLSDRHKGIGSDGLVLIMPS-DKCSFR 57
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL----IVPEIQDDGKV 193
MR+FNSDGSE +MCGN +RC +++ + K + T+ T AG+ + P KV
Sbjct: 58 MRMFNSDGSEAQMCGNAIRCVGKYVYD-NGYTRKLNITIETLAGVKQLELFPTNDKIRKV 116
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
KV+MG+PIL A D+P K ++ +D +W +T VSMGNPH V F K
Sbjct: 117 KVNMGKPILLAKDIPVIWEKEK---LIYETIDFSSEQWILTAVSMGNPHVVIFVEK---- 169
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V +L++ IG + EHH +FP + N +FVEI+S KMRVWERG+G T ACGTGACA
Sbjct: 170 --VSRLDVKRIGKEIEHHPMFPEKINVDFVEILSLYHAKMRVWERGSGETQACGTGACAA 227
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
+VA+VL G R+ T+ L GG L++EW E+ HV+MTG A +VF G
Sbjct: 228 LVASVLNGKLNRKATISLLGGDLELEWDEKTEHVFMTGDASLVFIG 273
>gi|312135799|ref|YP_004003137.1| diaminopimelate epimerase [Caldicellulosiruptor owensensis OL]
gi|311775850|gb|ADQ05337.1| diaminopimelate epimerase [Caldicellulosiruptor owensensis OL]
Length = 278
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 125/287 (43%), Positives = 179/287 (62%), Gaps = 17/287 (5%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F K HGLGNDFI++D R + A ++C R+ G+GADG++ + D MRI
Sbjct: 3 FSKMHGLGNDFIVIDARGKEDIDYNF-LAKRMCHRHIGVGADGILLVLDS-KLADIRMRI 60
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDDG---KVKV 195
NSDGSE EMCGNG+RCF++++ E + K F V T AG+I P++ D G KV+V
Sbjct: 61 INSDGSEAEMCGNGIRCFSKYVFE-RGIVKKDKFKVETLAGIIEPQLILNDYGLVEKVRV 119
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
+MG+P K D+P + + + + + ++V+G ++ +T + MG PH V F
Sbjct: 120 NMGKPSFKRKDIP--MQGDPESDAINTPIEVEGKEYKITSLLMGVPHTVLFVDD------ 171
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
V+K+++ +GP E H VFP +TN FV++I + +K+R WERGAGAT ACGTG+CA V+
Sbjct: 172 VEKVDIYTLGPNIEKHEVFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVI 231
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
AA L G ER+ V L G L+IEW+++D V+MTGPAE VF G L
Sbjct: 232 AANLNGLTERKANVHLYFGTLEIEWQDDDT-VFMTGPAEEVFVGEYL 277
>gi|429761250|ref|ZP_19293680.1| diaminopimelate epimerase [Anaerostipes hadrus DSM 3319]
gi|429184274|gb|EKY25297.1| diaminopimelate epimerase [Anaerostipes hadrus DSM 3319]
Length = 283
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/291 (45%), Positives = 184/291 (63%), Gaps = 19/291 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT-PEQAAK-LCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG GND++ V N E +I P + AK + DR+FGIG+DG+I P + D+
Sbjct: 1 MKFTKMHGCGNDYVYV---NCLEEKINNPNKVAKFISDRHFGIGSDGMICICPS-DKADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
M ++NSDGSE MCGNGVRC A+++ + L K + T+ T G+ ++ +DGKV
Sbjct: 57 RMAMYNSDGSEGAMCGNGVRCIAKYVYDY-GLTDKTTITIETKGGIKELDLTVEDGKVTW 115
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
KVDM PI KAS +P ++ + D+ V+ + VDG ++N+TC+SMGNPH V F
Sbjct: 116 VKVDMEAPITKASQIP-AIYDDLDE-VIDQPVIVDGKEYNITCISMGNPHGVVFVDS--- 170
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V +++ +IGPKFE+H +FP R NTEF+E++ +KMRVWERGAG TLACGTGACA
Sbjct: 171 ---VADIDIEKIGPKFENHPMFPDRVNTEFIELVDDKTIKMRVWERGAGETLACGTGACA 227
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A+ L ++ V L GG L IE+ ++ N ++MTGPA VF G + L
Sbjct: 228 SAYASYLNKKTGKKVLVHLLGGDLQIEYDDKKNTIFMTGPATTVFDGEIDL 278
>gi|388255789|ref|ZP_10132970.1| diaminopimelate epimerase [Cellvibrio sp. BR]
gi|387939489|gb|EIK46039.1| diaminopimelate epimerase [Cellvibrio sp. BR]
Length = 276
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 129/287 (44%), Positives = 170/287 (59%), Gaps = 19/287 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HGLGNDF+++D + R+TPE+ + DRNFG+G D ++ P D+
Sbjct: 3 LRFSKMHGLGNDFVVIDGVGQSV-RLTPEKIRYIADRNFGVGCDQILLVETPENPDVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DGSE E CGNG RCFA F+ E L GK V T GLI +Q D +V VDM
Sbjct: 62 YRIFNCDGSEVENCGNGARCFAVFVRE-RKLTGKSVIKVETAGGLIELRVQQDEQVSVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L+ + +P D V DV G ++++ VSMGNPH V L VD
Sbjct: 121 GAPRLQPAQIPFV----ADSQAVTYPFDVAGKTYDISAVSMGNPHGV---------LLVD 167
Query: 258 KLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ +AE+GP E+H+ FPAR N F++I+S +++ +RV+ERG G TLACGTGAC V
Sbjct: 168 DVKTAPVAELGPLIENHARFPARVNVGFMQIVSRNEINLRVFERGVGETLACGTGACGAV 227
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA L G +++ V+LPGG L I+W E V MTGPA VF+G +
Sbjct: 228 VAGRLRGLLDQQVKVNLPGGSLQIDWPGEGQPVIMTGPAVTVFHGQI 274
>gi|146296337|ref|YP_001180108.1| diaminopimelate epimerase [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145409913|gb|ABP66917.1| Diaminopimelate epimerase [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 278
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 125/287 (43%), Positives = 178/287 (62%), Gaps = 17/287 (5%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F K HGLGNDFI++D R + A ++C R+ G+GADG++ + + D MRI
Sbjct: 3 FSKMHGLGNDFIVIDTRGKEDIDYNL-LAKRMCHRHIGVGADGLLLVLNS-DIADIRMRI 60
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE--IQDDG---KVKV 195
NSDGSE EMCGNG+RCFA+++ E + F V T AG+I PE + + G KVKV
Sbjct: 61 INSDGSEAEMCGNGIRCFAKYVYE-RGIVKATKFKVETLAGIIEPELFVNEYGLVDKVKV 119
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
+MG+P K D+P + + + + + + VDG ++ +T + MG PH + F
Sbjct: 120 NMGKPSFKRKDIP--MQGDPESDAINTSIVVDGNEYRITSLLMGVPHTILFVDD------ 171
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
V+K+++ +GPK E H FP +TN FV++I + +K+R WERGAGAT ACGTG+CA V+
Sbjct: 172 VEKVDIYTLGPKIEKHEAFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVI 231
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
AA L G ER+ V L G L+I+W+++D V+MTGPAE VF G L
Sbjct: 232 AANLNGLTERKANVHLYFGTLEIQWQDDDT-VFMTGPAEEVFVGEYL 277
>gi|218134074|ref|ZP_03462878.1| hypothetical protein BACPEC_01964 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991449|gb|EEC57455.1| diaminopimelate epimerase [[Bacteroides] pectinophilus ATCC 43243]
Length = 293
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/293 (45%), Positives = 177/293 (60%), Gaps = 23/293 (7%)
Query: 85 HGLGNDFILVD-NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNS 143
HG GND++ VD + S E A + DR+FGIG+DG+I P + D+ M ++NS
Sbjct: 2 HGAGNDYVYVDCTKTSIEN--AGAVAKFVSDRHFGIGSDGLILIKPS-DKADFFMEMYNS 58
Query: 144 DGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG------KVKVDM 197
DGS +MCGNG+RC A+++ + L K+ + T AG+ ++ D V+V+M
Sbjct: 59 DGSRAQMCGNGIRCVAKYVYDYR-LTDKKELAIDTLAGIKYIQLNVDPATDRVVSVRVNM 117
Query: 198 GEPILKASDVPTSLSAN------KD---QSVVKSELDVDGVKWNVTCVSMGNPHCVTFGT 248
G PILKASD+P ++S KD +VV L V G + VTCVSMGNPHCV
Sbjct: 118 GSPILKASDIPVNISGKDIEGITKDTIRDAVVSETLTVAGRDYQVTCVSMGNPHCVV--- 174
Query: 249 KEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
+ +D + EIGP FE+H VFP RTNTEFV++I + L MRVWERGAG TLACGT
Sbjct: 175 FMDDDFDMDNFRIEEIGPLFENHEVFPERTNTEFVKVIDKNNLLMRVWERGAGETLACGT 234
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
G CA +VAAVL G AE + + GG L+I W ++N VYM GPA VF G +
Sbjct: 235 GCCASLVAAVLNGFAEDEAVLHVLGGKLNISWNRKENTVYMEGPAVTVFDGDI 287
>gi|192360012|ref|YP_001983744.1| diaminopimelate epimerase [Cellvibrio japonicus Ueda107]
gi|229807488|sp|B3PEI8.1|DAPF_CELJU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|190686177|gb|ACE83855.1| diaminopimelate epimerase [Cellvibrio japonicus Ueda107]
Length = 276
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/286 (45%), Positives = 168/286 (58%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
+ F K HGLGNDF+++D + T R+TPE+ KL DR+FG+G D V+ +P D+
Sbjct: 3 IRFSKMHGLGNDFVVIDGISQTV-RLTPEKIRKLADRHFGVGCDQVLLVEIPEQPNVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DGSE E CGNG RCFA F+ E L GK+ V T G+I +QDD +V VDM
Sbjct: 62 YRIFNCDGSEVENCGNGARCFAVFVRE-RRLTGKRVIRVETAGGIIELRVQDDEQVSVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L +P + DQ V LDV G +++ VSMGNPH V V
Sbjct: 121 GVPRL----LPEKIPFVADQQAVTYPLDVAGQVCSISAVSMGNPHAVMLVDD------VK 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ ++GP E+H FPAR N F++++S ++ +RV+ERGAG TLACGTGACA VV
Sbjct: 171 SAPVGQLGPLVENHPRFPARVNAGFLQVVSRDEINLRVYERGAGETLACGTGACAAVVTG 230
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
L G V+LPGG L I W E + V MTGPA VF+G + L
Sbjct: 231 RLRGLLNDTVKVNLPGGSLRISWPGEGHSVIMTGPAVTVFHGQIKL 276
>gi|312621623|ref|YP_004023236.1| diaminopimelate epimerase [Caldicellulosiruptor kronotskyensis
2002]
gi|312202090|gb|ADQ45417.1| diaminopimelate epimerase [Caldicellulosiruptor kronotskyensis
2002]
Length = 278
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 127/287 (44%), Positives = 176/287 (61%), Gaps = 17/287 (5%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F K HGLGNDFI++D R + A ++C R+ G+GADG++ + D MRI
Sbjct: 3 FSKMHGLGNDFIVIDARGKEDIDYNL-LAKRMCHRHIGVGADGLLLVLDS-KLADIRMRI 60
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE--IQDDG---KVKV 195
NSDGSE EMCGNG+RCFA+++ E + F V T AG+I PE I + G KVKV
Sbjct: 61 INSDGSEAEMCGNGIRCFAKYVFE-RGIVKATKFKVETLAGIIEPELFINEYGLVDKVKV 119
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
+MG+P K D+P + + + + + VDG ++ +T + MG PH + F
Sbjct: 120 NMGKPSFKRKDIP--MQGDPKSDAINTSIVVDGNEYRITSLLMGVPHTILFVDD------ 171
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
++K+++ +GPK E H +FP +TN FV++I + +K+R WERGAGAT ACGTG+CA V+
Sbjct: 172 LEKVDIYTLGPKIEKHEIFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVI 231
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
AA L G ER+ V L G L+IEW+ ED V+MTGPAE VF G L
Sbjct: 232 AANLNGLTERKANVHLYFGILEIEWR-EDGIVFMTGPAEEVFVGEYL 277
>gi|292669828|ref|ZP_06603254.1| diaminopimelate epimerase [Selenomonas noxia ATCC 43541]
gi|422343314|ref|ZP_16424242.1| diaminopimelate epimerase [Selenomonas noxia F0398]
gi|292648625|gb|EFF66597.1| diaminopimelate epimerase [Selenomonas noxia ATCC 43541]
gi|355378621|gb|EHG25801.1| diaminopimelate epimerase [Selenomonas noxia F0398]
Length = 279
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 126/285 (44%), Positives = 171/285 (60%), Gaps = 16/285 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K+ G GNDF++VD + EP A ++CDR+FG+GADG++ P D M
Sbjct: 1 MEFTKWQGCGNDFVIVDFLDR-EPVDFAALAVRMCDRHFGVGADGLMIVCPS-ETADIRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KVK 194
R FN DG+EPEMCGNG+RCFAR + + + ++ FT+ T AG +VP I + V+
Sbjct: 59 REFNPDGTEPEMCGNGIRCFARCLYDCGRIR-REQFTIETIAGTMVPRILTESGEVTAVE 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMGEP+L +P + + V+ + V+ + +TCVSMGNPHCV F
Sbjct: 118 VDMGEPVLAGDAIP--VRGFGMEPVIAQPITVEDRTYAMTCVSMGNPHCVIFVDD----- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ LAE+GPKFE+H FP R NTEFV + +MRVWERGAG TLACGTG CA +
Sbjct: 171 -AEGFPLAELGPKFENHPAFPRRINTEFVHVRDRKHARMRVWERGAGITLACGTGTCATL 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
A VL +R +++ GG + + W D H++MTGPAE VF G
Sbjct: 230 AAGVLCDVLDRAAEIEVDGGVIHVAWH-ADGHIFMTGPAEPVFAG 273
>gi|238916379|ref|YP_002929896.1| diaminopimelate epimerase [Eubacterium eligens ATCC 27750]
gi|238871739|gb|ACR71449.1| diaminopimelate epimerase [Eubacterium eligens ATCC 27750]
Length = 305
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 185/310 (59%), Gaps = 29/310 (9%)
Query: 73 RRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAA-KLCDRNFGIGADGVIFAMPGV 131
+R G + F K HG GND+I VD S P Q A L DR+FGIG+DG+I +
Sbjct: 2 KRRPG-MKFTKMHGAGNDYIYVDCTQSVIDN--PSQVAIDLSDRHFGIGSDGLIL-IKNS 57
Query: 132 NGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQD-- 189
+ D+ M ++N+DGS+ +MCGNG+RC +F+ + L K + T+ T AG+ + E++
Sbjct: 58 DKADFFMEMYNADGSQGQMCGNGIRCVGKFVYD-NGLTDKTTVTIDTLAGVKILELKTGA 116
Query: 190 DGKV---KVDMGEPILKASDVPTSLSANKDQS---------------VVKSELDVDGVKW 231
DGKV +V+MG PIL+A+ +P K+ VV + V+G ++
Sbjct: 117 DGKVETARVNMGAPILEAAQIPVDTKGLKEYKGCEIETIAGKVVKTPVVDETIVVEGKEY 176
Query: 232 NVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQL 291
VT VSMGNPH + + K+ + + K + +IGP FE+H FP R NTEF++++ + L
Sbjct: 177 KVTAVSMGNPHAIVYLDKD---IDIKKFEIEKIGPFFENHKAFPERINTEFIQVVDKNNL 233
Query: 292 KMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTG 351
MRVWERG+G TLACGTGACA +VA VL G + T+ L GG L I W +++N VY+ G
Sbjct: 234 NMRVWERGSGETLACGTGACASLVATVLNGMCDTTATLHLLGGDLKITWDKDENTVYLEG 293
Query: 352 PAEVVFYGSV 361
PA+ VF G V
Sbjct: 294 PAKTVFTGEV 303
>gi|333377762|ref|ZP_08469495.1| diaminopimelate epimerase [Dysgonomonas mossii DSM 22836]
gi|332883782|gb|EGK04062.1| diaminopimelate epimerase [Dysgonomonas mossii DSM 22836]
Length = 279
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 136/288 (47%), Positives = 182/288 (63%), Gaps = 16/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K HG GND+I + N E A +L +RNFGIG+DG++ +P N +D+ M
Sbjct: 4 LKFTKMHGAGNDYIYM-NGFIQEIEDPSALAIRLSNRNFGIGSDGLVLILPSEN-SDFRM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL-IVPEIQDDGK---VK 194
++FNSDGSE EMCGN RC +++ + L K+ + T AG+ + ++ D K V
Sbjct: 62 QMFNSDGSEAEMCGNASRCVGKYVYD-NGLTTKKEIALETKAGVKYITLLEGDEKARKVT 120
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMGEPIL +P + + V+ LD+DG W ++CVSMGNPH V F T
Sbjct: 121 VDMGEPILDPVQIPVKVDK---EPVLNFPLDIDGKIWEISCVSMGNPHAVVFTTG----- 172
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ +L+L IGPKFE H +FP +TNTEF+E++ L MRVWERGAG TLACGTGACA
Sbjct: 173 -IKELDLPVIGPKFEKHPIFPRKTNTEFIEVVDRKTLNMRVWERGAGETLACGTGACAAA 231
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VAA+L G+ +R+ T+ L GG L+IEW E++NHVYMTG A VF G +
Sbjct: 232 VAAILNGYCDRKITIHLIGGDLEIEWDEQNNHVYMTGEAVTVFEGEIF 279
>gi|224370826|ref|YP_002604990.1| protein DapF [Desulfobacterium autotrophicum HRM2]
gi|259595052|sp|C0QAP3.1|DAPF_DESAH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|223693543|gb|ACN16826.1| DapF [Desulfobacterium autotrophicum HRM2]
Length = 283
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 137/290 (47%), Positives = 177/290 (61%), Gaps = 18/290 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPE--QAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
L+F K GLGNDF+++D+RN + P A KLC R FG+G DG+I + D
Sbjct: 3 LNFTKMEGLGNDFVMLDDRNGAIVQTVPYPVLAKKLCSRRFGVGGDGIIIIIDS-ETADV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDDGKVK 194
+IFN DGSEPEMCGNG+RCFA+ + E + + KQ FTV T AG I+PEI D +V+
Sbjct: 62 GFKIFNPDGSEPEMCGNGMRCFAKLVFE-QGIVTKQRFTVETLAGTIIPEILLSDTRQVE 120
Query: 195 ---VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
VDMGEPIL+ +P N+ Q V ++ V G ++T VSMGNPH V F
Sbjct: 121 AICVDMGEPILEPDRIP--FKCNR-QRAVNEQIQVKGETVSITAVSMGNPHAVIFVDD-- 175
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
V K++L +G E H +FPA+TN EFV +++ +L MRVWERGAG TLACGTGA
Sbjct: 176 ----VKKIDLENLGRAIETHELFPAKTNVEFVTVLNDQELVMRVWERGAGETLACGTGAS 231
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
AV+VAA L G V L GG L I W ++ NH++ TGPA VF G +
Sbjct: 232 AVLVAASLNGLTRETALVHLAGGDLSIHWDQQSNHLFKTGPATHVFTGRI 281
>gi|312126876|ref|YP_003991750.1| diaminopimelate epimerase [Caldicellulosiruptor hydrothermalis 108]
gi|311776895|gb|ADQ06381.1| diaminopimelate epimerase [Caldicellulosiruptor hydrothermalis 108]
Length = 278
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 126/287 (43%), Positives = 177/287 (61%), Gaps = 17/287 (5%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F K HGLGNDFI++D R + A ++C R+ G+GADG++ + + D MRI
Sbjct: 3 FSKMHGLGNDFIVIDARGKEDIDYNL-LAKRMCHRHIGVGADGLLLVLNS-DIADIRMRI 60
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE--IQDDG---KVKV 195
NSDGSE EMCGNG+RCFA+++ E + F V T AG+I PE + + G KVKV
Sbjct: 61 INSDGSEAEMCGNGIRCFAKYVYE-RGIVKATKFKVETLAGIIEPELFVNEYGLVDKVKV 119
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
+MG+P K D+P + + + + + + VDG ++ +T + MG PH + F
Sbjct: 120 NMGKPSFKRKDIP--MQGDPESDAINTSIVVDGNEYRITSLLMGVPHTILFVDD------ 171
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
V+K+++ +GPK E H FP +TN FV++I + +K+R WERGAGAT ACGTG+CA V+
Sbjct: 172 VEKVDIYTLGPKIEKHEAFPRKTNVNFVQVIDKNNIKVRTWERGAGATFACGTGSCASVI 231
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
A+ L G ER+ V L G L+IEW +ED V+MTGPAE VF G L
Sbjct: 232 ASNLNGFTERKANVHLYFGILEIEW-QEDGIVFMTGPAEEVFVGEYL 277
>gi|225569359|ref|ZP_03778384.1| hypothetical protein CLOHYLEM_05443 [Clostridium hylemonae DSM
15053]
gi|225162158|gb|EEG74777.1| hypothetical protein CLOHYLEM_05443 [Clostridium hylemonae DSM
15053]
Length = 277
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 132/291 (45%), Positives = 175/291 (60%), Gaps = 20/291 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HGLGND++ V N + +I PE A L DR+FG+G+DG+I P D+
Sbjct: 1 MKFTKMHGLGNDYVYV---NCFKEKIGNPPEAARILSDRHFGVGSDGLIMICPS-EKADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGK--- 192
M ++N+DGS EMCGNG+RC A+++ + L K + +V T G+ ++ DGK
Sbjct: 57 EMEMYNADGSRGEMCGNGIRCVAKYVYDY-GLTDKTNISVETLGGVKYLDLTVKDGKAVL 115
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
+KVDMG P LK +P + +V+ + VDG + +T VSMGNPH V F
Sbjct: 116 IKVDMGRPELKPERIPIVSGGD---AVISEPIVVDGAIYRMTGVSMGNPHAVIFVDD--- 169
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V L L +GPKFE+H FP R NTEF +I ++MRVWERG+G TLACGTGACA
Sbjct: 170 ---VKGLELEAVGPKFENHERFPKRVNTEFARVIDRETVEMRVWERGSGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V VA +L G E + TV L GG L IEW +E + VYMTGPA VVF G + +
Sbjct: 227 VAVACILNGLTEDKVTVRLLGGDLLIEWDKEADKVYMTGPATVVFDGEIQI 277
>gi|404494764|ref|YP_006718870.1| diaminopimelate epimerase [Pelobacter carbinolicus DSM 2380]
gi|77546747|gb|ABA90309.1| diaminopimelate epimerase [Pelobacter carbinolicus DSM 2380]
Length = 279
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 131/288 (45%), Positives = 179/288 (62%), Gaps = 21/288 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG GND++ V N E I E A K+ +RNFGIG+DG+I +P D
Sbjct: 1 MKFAKMHGAGNDYVYV---NCFEQTIDDPAEMARKVSNRNFGIGSDGLILILPS-EVADV 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
MR+FNSDGSE EMCGNG+RC A++ A L K+ T TGAG++ ++ + +
Sbjct: 57 RMRMFNSDGSESEMCGNGIRCVAKY-AYDHGLVEKKEITAETGAGILTLQLFTNDRDKVE 115
Query: 193 -VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
V+V+MG+P L ++P ++ + ++ V+ +EL V +++TCVSMGNPHC+ F
Sbjct: 116 RVRVNMGKPRLTRGEIP--MTGSPEEQVINAELKVLDRTFHITCVSMGNPHCIIFVDN-- 171
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
VD+ +A+ GP E+ +FP RTN EF+EI+S +++K R WERGAG TLACGTG+
Sbjct: 172 ----VDEFPVAKYGPIIENDPMFPNRTNVEFIEIVSTTEIKQRTWERGAGETLACGTGSS 227
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
AV VA VL ERR L GG L++EW ED VYMTGPA VF G
Sbjct: 228 AVTVACVLNERTERRLLNHLLGGDLEMEWA-EDGSVYMTGPAVQVFEG 274
>gi|148265927|ref|YP_001232633.1| diaminopimelate epimerase [Geobacter uraniireducens Rf4]
gi|146399427|gb|ABQ28060.1| diaminopimelate epimerase [Geobacter uraniireducens Rf4]
Length = 278
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 176/290 (60%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG GND++ V N R+ + A K+ +RNFGIG+DG+I MP + D
Sbjct: 1 MKFTKMHGAGNDYVYV---NCFSERVDNPADVAIKVSNRNFGIGSDGLILIMPS-DKADV 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAG-----LIVPEIQDDG 191
MR+FNSDGSE EMCGNG+RC A++ A + GK+ + TGAG L E
Sbjct: 57 RMRMFNSDGSESEMCGNGIRCVAKY-AYDHGIVGKKEISAETGAGILTLQLFTNEANKVE 115
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
KV+V+MG P L S++P ++ V+ L++ +++TC SMGNPHCV F +
Sbjct: 116 KVRVNMGRPRLTRSEIP--MTGEAGAKVINEPLNILHTTFHITCASMGNPHCVIF-VDDV 172
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+N +V+K GP E+H +FP RTN EFV+IIS ++++ R WERGAG TLACGTGA
Sbjct: 173 ENFQVEKY-----GPIIENHEIFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGAS 227
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
AV VA L G E++ L GG L++EW ED +YMTGPA VF G +
Sbjct: 228 AVCVAGALNGLTEKKILNHLSGGDLELEWA-EDGFLYMTGPAVEVFSGEI 276
>gi|238923849|ref|YP_002937365.1| diaminopimelate epimerase [Eubacterium rectale ATCC 33656]
gi|259595055|sp|C4Z900.1|DAPF_EUBR3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|238875524|gb|ACR75231.1| diaminopimelate epimerase [Eubacterium rectale ATCC 33656]
Length = 285
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/293 (44%), Positives = 176/293 (60%), Gaps = 21/293 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT-PEQAA-KLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG GND++ V N E ++ P + + + DR+FGIG+DG+I P + D+
Sbjct: 1 MKFTKMHGCGNDYVYV---NLFEEKLDDPARVSIYVSDRHFGIGSDGLITIGPS-DKADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL----IVPEIQDDGK 192
MRI+N+DGSE EMCGNG+RC A+++ + L K +V TGAG+ + E +
Sbjct: 57 RMRIYNADGSEAEMCGNGIRCVAKYVYD-HKLTDKTEISVETGAGIKYLTLYVEENKVSQ 115
Query: 193 VKVDMGEPILKASDVPT----SLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGT 248
V+VDMGEPIL D+P + + D V+ + +W++TCVSMGNPH V F
Sbjct: 116 VRVDMGEPILTPGDIPVVKADGSAYSDDYRVIDEPISAGNREWHMTCVSMGNPHAVVFVD 175
Query: 249 KEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
V L + GP FE+H +FP RTNTEFVEI+S ++ KMRVWERG+ T ACGT
Sbjct: 176 D------VAGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGT 229
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
G CA V+A +L + + V L GG L IE+ E NHV+MTGPA VF G +
Sbjct: 230 GTCATVMACILNKKTDNKVLVHLRGGDLTIEYIPETNHVFMTGPATEVFSGEI 282
>gi|397647323|gb|EJK77652.1| hypothetical protein THAOC_00502 [Thalassiosira oceanica]
Length = 226
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/232 (52%), Positives = 164/232 (70%), Gaps = 13/232 (5%)
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
MRI+NSDGSEPEMCGNG+RC+A+F+ +L ++S+ ++T AGLI+PE+++DG + VDM
Sbjct: 1 MRIYNSDGSEPEMCGNGIRCYAQFLKDLGA--DQKSYRINTLAGLIIPEMKEDGNICVDM 58
Query: 198 GEPILKASDVPTSLSANKD-QSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
GEPIL VPT+L+ N + SV++ +G +W ++ VSMGNPH + F +L+
Sbjct: 59 GEPILDGPTVPTTLAPNSEGNSVLEQVHTCNGKEWKISMVSMGNPHAIIFV----DDLEK 114
Query: 257 DKLNLAEIGPKFEHH-SVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
D ++ + GP E SVFPA+TN EFV+++SP+ LKM+VWERGAG TLACGTG CA+VV
Sbjct: 115 D-IDFEKDGPALESDTSVFPAKTNVEFVQVMSPTHLKMKVWERGAGPTLACGTGTCALVV 173
Query: 316 AAVLEGHAERR----CTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
AA+ G R V LPGG L IEW+EE+N VYMTGPA + F GS +L
Sbjct: 174 AAIRAGKIPRPGKEGVRVTLPGGDLFIEWREENNKVYMTGPATLSFQGSAVL 225
>gi|402815950|ref|ZP_10865542.1| diaminopimelate epimerase DapF [Paenibacillus alvei DSM 29]
gi|402506990|gb|EJW17513.1| diaminopimelate epimerase DapF [Paenibacillus alvei DSM 29]
Length = 276
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/285 (45%), Positives = 165/285 (57%), Gaps = 16/285 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HGLGNDF++V P E A +CDR+FGIGADG+++ +P D M
Sbjct: 1 MKFTKMHGLGNDFVIVYGEQEL-PANVSELAIAVCDRHFGIGADGLVYILPS-QSADVMM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLI-VPEIQDDGKV---K 194
RI NSDG+E E CGN +RC + ++ +N + T+ T AG+ V I+ DG V +
Sbjct: 59 RIINSDGTEAEQCGNAIRCVSTYVVAHGFVN-RDELTIETRAGIQRVQIIRQDGSVHAVR 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMGEP+L VPT + ++V ++ G ++ T VSMGNPHCV F
Sbjct: 118 VDMGEPVLDGLRVPTIF---DEATIVDKPIEAGGHAFSFTAVSMGNPHCVIFVDDAA--- 171
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
++ GP E HS FP N EF I + + MRVWERGAG TLACGTGACA +
Sbjct: 172 ---TFDIHAWGPLLESHSYFPRNINVEFASIDTRDHVTMRVWERGAGPTLACGTGACATL 228
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
V++VL G +R TV L GG L IEW DNHVYMTGPA VF G
Sbjct: 229 VSSVLNGLTDRAATVSLAGGDLFIEWNPADNHVYMTGPATFVFEG 273
>gi|222054498|ref|YP_002536860.1| diaminopimelate epimerase [Geobacter daltonii FRC-32]
gi|221563787|gb|ACM19759.1| Diaminopimelate epimerase [Geobacter daltonii FRC-32]
Length = 278
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/290 (44%), Positives = 176/290 (60%), Gaps = 17/290 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HG GND++ VD S + + A K+ +RNFGIG+DG+I MP + M
Sbjct: 1 MKFTKMHGAGNDYVYVDCF-SEQVENPADVAIKVSNRNFGIGSDGLILIMPS-DKAHVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDD-----GKV 193
R+FNSDGSE EMCGNG+RC A++ A + K+ T TGAG++ ++ + KV
Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKY-AYDHGIVDKKEITAETGAGILTLQLFTNCCNKVDKV 117
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+V+MG+P L ++P +S D VV L++ +N+TC SMGNPHCV F
Sbjct: 118 RVNMGKPRLTRGEIP--MSGPADARVVSEPLNILHTTFNITCASMGNPHCVIFVDD---- 171
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
VD + + GP E+H +FP RTN EFV+IIS ++++ R WERGAG TLACGTGA AV
Sbjct: 172 --VDNFQVEKYGPLIENHEIFPRRTNVEFVQIISRTEVRQRTWERGAGETLACGTGASAV 229
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA L G +++ L GG L++EW ED +YMTGPA VF G + +
Sbjct: 230 CVAGALNGLTDKKILNHLSGGDLELEWS-EDGFLYMTGPAVEVFSGEIAI 278
>gi|90019886|ref|YP_525713.1| diaminopimelate epimerase [Saccharophagus degradans 2-40]
gi|123396771|sp|Q21P78.1|DAPF_SACD2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|89949486|gb|ABD79501.1| diaminopimelate epimerase [Saccharophagus degradans 2-40]
Length = 277
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/285 (45%), Positives = 168/285 (58%), Gaps = 14/285 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HGLGNDF+++D S ITPE+A +L DR+FG+G D V+ P D+
Sbjct: 3 LRFTKMHGLGNDFVMIDAI-SQRVTITPERARQLADRHFGVGCDQVLVVETPDSPDADFK 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DGSE E CGNG RCFA F+ + L K TV T G +V +Q+D +V VDM
Sbjct: 62 YRIFNHDGSEVENCGNGARCFAVFVRQ-RGLTAKSVITVETAVGRMVLHVQEDDQVTVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGV-KWNVTCVSMGNPHCVTFGTKEGQNLKV 256
G PIL +D+P + Q L G + VSMGNPH V + + + V
Sbjct: 121 GAPILSPADIPLA----APQQATSYTLPTQGAGDITIGAVSMGNPHAV-YCVNDCKTAPV 175
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
+ L GP+ E H FP + N F++++SPS++ +RV+ERGAG TLACGTGACA VVA
Sbjct: 176 ETL-----GPEIEAHPHFPKKVNAGFMQVVSPSEINLRVYERGAGETLACGTGACAAVVA 230
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
L+G E V+LPGG L I W+ D+ V MTGPA VF+G V
Sbjct: 231 GRLQGLLENTVKVNLPGGSLSITWEGVDSPVMMTGPATTVFHGQV 275
>gi|291527977|emb|CBK93563.1| diaminopimelate epimerase [Eubacterium rectale M104/1]
Length = 285
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/293 (44%), Positives = 175/293 (59%), Gaps = 21/293 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT-PEQAA-KLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG GND++ V N E ++ P + + + DR+FGIG+DG+I P D+
Sbjct: 1 MKFTKMHGCGNDYVYV---NLFEEKLDDPARVSIYVSDRHFGIGSDGLITIGPS-GKADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL----IVPEIQDDGK 192
MRI+N+DGSE EMCGNG+RC A+++ + L K +V TGAG+ + E +
Sbjct: 57 RMRIYNADGSEAEMCGNGIRCVAKYVYD-HKLTDKTEISVETGAGIKYLTLYVEENKVSQ 115
Query: 193 VKVDMGEPILKASDVPT----SLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGT 248
V+VDMGEPIL D+P + + D V+ + +W++TCVSMGNPH V F
Sbjct: 116 VRVDMGEPILTPGDIPVVKADGSAYSDDYRVIDEPISAGNREWHMTCVSMGNPHAVVFVD 175
Query: 249 KEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
V L + GP FE+H +FP RTNTEFVEI+S ++ KMRVWERG+ T ACGT
Sbjct: 176 D------VAGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGT 229
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
G CA V+A +L + + V L GG L IE+ E NHV+MTGPA VF G +
Sbjct: 230 GTCATVMACILNKKTDNKVLVHLRGGDLTIEYIPETNHVFMTGPATEVFSGEI 282
>gi|167761453|ref|ZP_02433580.1| hypothetical protein CLOSCI_03863 [Clostridium scindens ATCC 35704]
gi|167661119|gb|EDS05249.1| diaminopimelate epimerase [Clostridium scindens ATCC 35704]
Length = 277
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/291 (43%), Positives = 183/291 (62%), Gaps = 20/291 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT-PEQAAKLC-DRNFGIGADGVIFAMPGVNGTDY 136
+ F K HGLGND++ V N + ++ P + A+ DR+FGIG+DG+I P D+
Sbjct: 1 MRFTKMHGLGNDYVYV---NCFKEKVEHPSEVARFVSDRHFGIGSDGLIMINPS-KVADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
M ++N+DGS EMCGNG+RC A+++ + L K S +V T G+ ++ DGKV
Sbjct: 57 EMEMYNADGSRGEMCGNGIRCVAKYVYDY-GLTDKTSISVETLGGIKYLDLTVKDGKVAL 115
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
KVDMG+P LK +P + ++ VV + V G+++ +T VSMGNPH V + K+ +
Sbjct: 116 VKVDMGKPELKPERIPI---VSDEERVVNEPIIVGGMEYRMTGVSMGNPHVVVY-VKDLE 171
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
+K++ +GPKFE+H FP R NTEF +++ ++MRVWERG+G TLACGTGACA
Sbjct: 172 GVKIE-----HVGPKFENHERFPKRVNTEFTKVLDRKTVEMRVWERGSGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V VA++L G E + TV L GG L IEW +E VYMTGPA VV+ G + +
Sbjct: 227 VAVASILNGMTEDQVTVKLLGGDLLIEWDQEAGRVYMTGPATVVYDGEIAI 277
>gi|291551103|emb|CBL27365.1| diaminopimelate epimerase [Ruminococcus torques L2-14]
Length = 276
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/289 (44%), Positives = 174/289 (60%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQA--AKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K G+GND++ V N E ++ A ++ DR+FGIG+DG+I P D
Sbjct: 1 MKFTKMQGIGNDYVYV---NCFEEKVEDPSALAIQVSDRHFGIGSDGLILICPS-EVADC 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL----IVPEIQDDGK 192
M ++N+DGS EMCGNGVRC +++ + L K TV T AG+ + E K
Sbjct: 57 EMAMYNADGSRGEMCGNGVRCVGKYMYDY-GLTDKTEITVETLAGIKTLQLFVENGKVAK 115
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V+VDMG PIL +++P +K V + VDG ++++TCVSMGNPH V +
Sbjct: 116 VRVDMGSPILTPAEIPVVAEGDK---AVDEPILVDGKEYHMTCVSMGNPHAVVYVDD--- 169
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ L + EIGPKFE H FP R NTEFV+++ ++MRVWERG+ TLACGTGACA
Sbjct: 170 ---VNNLPIEEIGPKFESHERFPRRVNTEFVKVLDRHTVQMRVWERGSAETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V V+ +L G E TV L GG L+I+W +E N VYMTGPA VVF G +
Sbjct: 227 VAVSCILNGLTEDEVTVKLLGGDLEIQWDQEKNTVYMTGPATVVFDGEL 275
>gi|398349070|ref|ZP_10533773.1| diaminopimelate epimerase [Leptospira broomii str. 5399]
Length = 282
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 131/289 (45%), Positives = 172/289 (59%), Gaps = 18/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K G+GND+I +D S E ++ P+Q KL DRNFGIG DGVIF NG D+ M
Sbjct: 4 VQFTKMEGIGNDYIYID-ATSNELKLNPQQIQKLSDRNFGIGGDGVIFIRSSTNG-DFQM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ--DDGKVK-- 194
++N+DGS EMCGNG+RC A+++ + L K++ + TGAGL+ ++ + KV+
Sbjct: 62 DMYNADGSSSEMCGNGIRCVAKYVFD-HGLTTKKNPIIETGAGLLKVDLTVGQNNKVELV 120
Query: 195 -VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG+PIL + +P + +V LD+ G T VSMGNPHCV F
Sbjct: 121 SVDMGKPILVPAQIPVKWK--NENPIVDQLLDIAGQNLKFTAVSMGNPHCVIFVDDP--- 175
Query: 254 LKVDKLNLAEIGPKFEHH-SVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
D + EIGP E+ +FP + N EFV + L R WERGAG TLACGTGACA
Sbjct: 176 ---DTFPVREIGPLIENKIELFPRKVNVEFVSLRGKDHLYQRTWERGAGETLACGTGACA 232
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V+ AA L G A + +DL GG L I+W E D HV MTGPA+ VF G+V
Sbjct: 233 VMTAAHLSGRAGKDVRIDLRGGSLRIQWLEND-HVLMTGPAKEVFTGTV 280
>gi|348025733|ref|YP_004765538.1| diaminopimelate epimerase [Megasphaera elsdenii DSM 20460]
gi|341821787|emb|CCC72711.1| diaminopimelate epimerase [Megasphaera elsdenii DSM 20460]
Length = 279
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 179/289 (61%), Gaps = 17/289 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ FVK HGLGNDF+ ++++N + + + A K+C + GIGADG+I +P + D M
Sbjct: 1 MKFVKMHGLGNDFVFLEDKNGADKDFS-QLAIKMCAPHTGIGADGIIVIVPS-DKADVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ--DDGKVK-- 194
RI N+DGSE EMCGNG+RCFA+++ + + K+ F V T AG++ P++ DDGKV
Sbjct: 59 RIINADGSEAEMCGNGIRCFAKYVYD-NGIIDKKEFAVETLAGIMKPKVTVGDDGKVSLV 117
Query: 195 -VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
++MG+P + +P + V+ +D+DG + +T + MG PH +T+ K+
Sbjct: 118 TINMGKPFTDRAQIPMEGPSG---PVIDEPIDIDGKTYKITSLLMGVPHTMTY-VKD--- 170
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
VD ++L E+GPKFE + FP +TN FV++I +K+ WERGAGATLACGTG+CA
Sbjct: 171 --VDAVDLHELGPKFETYKAFPRKTNMNFVQVIDDHTIKVHTWERGAGATLACGTGSCAC 228
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
V + L G R V L G L IE+ E+D +VYMTGPA V F G L
Sbjct: 229 AVGSFLNGFTGRSVDVQLYLGTLHIEYNEQDGNVYMTGPAAVTFTGDWL 277
>gi|421112488|ref|ZP_15572945.1| diaminopimelate epimerase [Leptospira santarosai str. JET]
gi|410802133|gb|EKS08294.1| diaminopimelate epimerase [Leptospira santarosai str. JET]
gi|456875423|gb|EMF90624.1| diaminopimelate epimerase [Leptospira santarosai str. ST188]
Length = 281
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 125/288 (43%), Positives = 171/288 (59%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G+GND++ +D+ + + R+TPEQ K+ DRNFGIG+DGVIF G D+ M
Sbjct: 4 LKFTKMEGIGNDYVYIDSTRA-DIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFMM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK-----V 193
++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++ V
Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTNSKNPKIETGAGVLEVDLKIGSSNKVDFV 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG+PIL S VP ++ +++++ ++ G T VSMGNPHCV F
Sbjct: 121 SVDMGKPILVPSKVP--VNWKDEETIIDQTFEIAGKDLKFTAVSMGNPHCVIFVDD---- 174
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+ + IGP E H +FP R N EFV + R WERGAG TLACGTGACAV
Sbjct: 175 --CDQFPVKGIGPLIERHPIFPKRVNVEFVSVRGKDHFYQRTWERGAGETLACGTGACAV 232
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+VA L G + R +DL GG L I+W+E N V MTGPA +F G +
Sbjct: 233 MVAGNLTGRSGRDVKIDLRGGTLRIQWQESGN-VLMTGPAREIFSGEI 279
>gi|418693532|ref|ZP_13254582.1| diaminopimelate epimerase [Leptospira kirschneri str. H1]
gi|409958558|gb|EKO17449.1| diaminopimelate epimerase [Leptospira kirschneri str. H1]
Length = 281
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 125/289 (43%), Positives = 172/289 (59%), Gaps = 19/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
L F K G+GND++ +D+ RN R+TPEQ K+ DRNFGIG+DGVIF G D+
Sbjct: 4 LKFTKMEGIGNDYVYIDSTRNDI--RLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFM 60
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK----- 192
M ++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++
Sbjct: 61 MDMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTSSKNPKIETGAGILEVDLKIGSGNKVDL 119
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V VDMG+P+L S +P +++++ L++ T VSMGNPHCV F
Sbjct: 120 VSVDMGKPVLVPSQIPVVWK--NEETIIDQPLEIGDKNLKFTAVSMGNPHCVIFVNDS-- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
D+ + IGP E HS+FP R N EFV + + L R WERGAG TLACGTGACA
Sbjct: 176 ----DEFPVRGIGPLIERHSIFPKRVNVEFVTVRGKNHLYQRTWERGAGETLACGTGACA 231
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V+VA L G + + +DL GG L I+W+E N + MTGPA +F G +
Sbjct: 232 VMVAGNLTGKSGKDVQIDLKGGTLRIQWQESGN-ILMTGPAREIFSGEI 279
>gi|336422560|ref|ZP_08602703.1| diaminopimelate epimerase [Lachnospiraceae bacterium 5_1_57FAA]
gi|336007733|gb|EGN37754.1| diaminopimelate epimerase [Lachnospiraceae bacterium 5_1_57FAA]
Length = 277
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 127/291 (43%), Positives = 184/291 (63%), Gaps = 20/291 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT-PEQAAKLC-DRNFGIGADGVIFAMPGVNGTDY 136
+ F K HGLGND++ V N + ++ P + A+ DR+FGIG+DG+I P D+
Sbjct: 1 MRFTKMHGLGNDYVYV---NCFKEKVEHPSEVARFVSDRHFGIGSDGLIMINPS-KVADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
M ++N+DGS EMCGNG+RC A+++ + L K S +V T G+ ++ DGKV
Sbjct: 57 EMEMYNADGSRGEMCGNGIRCVAKYVYDY-GLTDKTSISVETLGGIKYLDLTIKDGKVAL 115
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
KVDMG+P LK +P + ++ VV + V G+++ +T VSMGNPH V + K+ +
Sbjct: 116 VKVDMGKPELKPERIPI---VSDEERVVNEPIIVGGMEYRMTGVSMGNPHVVVY-VKDLE 171
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
+K++ +GPKFE+H FP R NTEF +++ ++MRVWERG+G TLACGTGACA
Sbjct: 172 GVKIE-----HVGPKFENHERFPKRVNTEFAKVLDRKTVEMRVWERGSGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V VA++L G E + TV L GG L IEW ++ + VYMTGPA VV+ G + +
Sbjct: 227 VAVASILNGMTEDQVTVKLLGGDLLIEWDQDADRVYMTGPATVVYDGEIAI 277
>gi|345879092|ref|ZP_08830771.1| valyl-tRNA synthetase [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344223881|gb|EGV50305.1| valyl-tRNA synthetase [endosymbiont of Riftia pachyptila (vent
Ph05)]
Length = 276
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 128/286 (44%), Positives = 171/286 (59%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K G+GNDF++ D N + ++ Q + DR FG+G D ++ P + TD+
Sbjct: 3 LRFSKMQGIGNDFVVFDAINQSV-ELSATQYRAIADRRFGVGCDQILLVESPRLPDTDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE E CGNG RCFARF+ E + L+ K+S V T +G IV + DDG V+VDM
Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVHE-KGLSSKRSIPVGTTSGRIVLNLLDDGLVQVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEPIL PT++ D L V G + V VSMGNPH V VD
Sbjct: 121 GEPILD----PTAIPFQADTIATSYPLQVGGEQLMVGAVSMGNPHAVLLVDS------VD 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ +GP E+H FP R N F+++I +Q+++RV+ERG+G TLACGTGACA VVA
Sbjct: 171 SFPVERLGPLIENHPRFPQRVNVGFMQVIDRNQIQLRVFERGSGETLACGTGACAAVVAG 230
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
L+G ++R V+LPGG L +EW E+ V M+GPA VF G + L
Sbjct: 231 RLQGLLDQRVQVNLPGGNLVVEWPGEEYPVLMSGPAVTVFEGKIEL 276
>gi|225175575|ref|ZP_03729569.1| Diaminopimelate epimerase [Dethiobacter alkaliphilus AHT 1]
gi|225168904|gb|EEG77704.1| Diaminopimelate epimerase [Dethiobacter alkaliphilus AHT 1]
Length = 290
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 136/300 (45%), Positives = 174/300 (58%), Gaps = 41/300 (13%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HGLGNDF++V++ + E A LC+RNFGIGADG+ P + +
Sbjct: 1 MRFTKMHGLGNDFVIVEDFDLGLTNYA-ELAMGLCNRNFGIGADGLALLQPSEQAA-FRV 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKV----- 193
RIFN DGSE E+CGN +RC +++ E HTG +I E+ D KV
Sbjct: 59 RIFNPDGSEAELCGNLLRCAGKYLYE----------KGHTGETVIPVEMYDKIKVLRLAV 108
Query: 194 --------KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVT 245
+VDMGEPIL++ VP A K + V E+ G K+ +T VSMGNPHCV
Sbjct: 109 TDGVVQSVEVDMGEPILESDLVPV---AGKRRQAVNEEVTASGEKFVMTAVSMGNPHCVI 165
Query: 246 FGTKEGQNLKVDK---LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGA 302
F VD+ + L GP E H FP +TN EFVE+ S + RVWERGAGA
Sbjct: 166 F---------VDETAAVPLETWGPALEAHPDFPKKTNVEFVEVRSRDEAAFRVWERGAGA 216
Query: 303 TLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
TLACG+GACAV+VA VL R+ T+ LPGG L+IEW+ +DNHVYMTGPA VF G ++
Sbjct: 217 TLACGSGACAVLVAGVLSDKLNRKATLHLPGGSLEIEWR-DDNHVYMTGPAAEVFRGELV 275
>gi|410448134|ref|ZP_11302220.1| diaminopimelate epimerase [Leptospira sp. Fiocruz LV3954]
gi|410018033|gb|EKO80079.1| diaminopimelate epimerase [Leptospira sp. Fiocruz LV3954]
Length = 281
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 125/288 (43%), Positives = 170/288 (59%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G+GND++ +D+ + + R+TPEQ K+ DRNFGIG+DGVIF G D+ M
Sbjct: 4 LKFTKMEGIGNDYVYIDSTRA-DIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFMM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK-----V 193
++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++ V
Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTNSKNPKIETGAGVLEVDLKIGSSNKVDFV 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG PIL S VP ++ +++++ ++ G T VSMGNPHCV F
Sbjct: 121 SVDMGTPILVPSKVP--VNWKDEETIIDQTFEIAGKDLKFTAVSMGNPHCVIFVDD---- 174
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+ + IGP E H +FP R N EFV + R WERGAG TLACGTGACAV
Sbjct: 175 --CDQFPVKGIGPLIERHPIFPKRVNVEFVSVRGKDHFYQRTWERGAGETLACGTGACAV 232
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+VA L G + R +DL GG L I+W+E N V MTGPA +F G +
Sbjct: 233 MVAGNLTGRSGRDVKIDLRGGTLRIQWQESGN-VLMTGPAREIFSGEI 279
>gi|430743979|ref|YP_007203108.1| diaminopimelate epimerase [Singulisphaera acidiphila DSM 18658]
gi|430015699|gb|AGA27413.1| diaminopimelate epimerase [Singulisphaera acidiphila DSM 18658]
Length = 278
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 170/285 (59%), Gaps = 15/285 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HGLGND++ V + EP A + DR+FGIG+DG+I P D M
Sbjct: 1 MKFTKMHGLGNDYVYVSTFDQKEPADLGALAIAVSDRHFGIGSDGLIMITPSER-ADARM 59
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KVK 194
R+FN+DG+E EMCGNGVRC A+++ + + + T+ TG G++ +++ +G +V+
Sbjct: 60 RMFNTDGTEGEMCGNGVRCVAKYVHD-HGIAPRPRVTIETGRGVLTLDLEVEGGKARRVR 118
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDM PIL+A+ +PT+L + + + L ++G VT VSMGNPH V +
Sbjct: 119 VDMQTPILQAAKIPTTLPG---EPPIDAPLTIEGHPLGVTAVSMGNPHAVVYVDD----- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V + + GP E+H FP R N F E++ P +++MR WERG+G TLACGTGACAV
Sbjct: 171 -VTRFPVERFGPLLENHVTFPKRVNVHFAEVVGPGEVRMRTWERGSGITLACGTGACAVC 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VA +L G R+ LPGG L++EW + V+MTGPA VF G
Sbjct: 230 VAGILTGRTGRKIIAHLPGGDLELEWPGDGQSVFMTGPATEVFSG 274
>gi|45655988|ref|YP_000074.1| diaminopimelate epimerase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|417763000|ref|ZP_12410983.1| diaminopimelate epimerase [Leptospira interrogans str. 2002000624]
gi|417770353|ref|ZP_12418263.1| diaminopimelate epimerase [Leptospira interrogans serovar Pomona
str. Pomona]
gi|417774513|ref|ZP_12422377.1| diaminopimelate epimerase [Leptospira interrogans str. 2002000621]
gi|417785067|ref|ZP_12432772.1| diaminopimelate epimerase [Leptospira interrogans str. C10069]
gi|418672455|ref|ZP_13233794.1| diaminopimelate epimerase [Leptospira interrogans str. 2002000623]
gi|418684178|ref|ZP_13245367.1| diaminopimelate epimerase [Leptospira interrogans serovar Pomona
str. Kennewicki LC82-25]
gi|418689442|ref|ZP_13250564.1| diaminopimelate epimerase [Leptospira interrogans str. FPW2026]
gi|418699890|ref|ZP_13260839.1| diaminopimelate epimerase [Leptospira interrogans serovar Bataviae
str. L1111]
gi|418705324|ref|ZP_13266189.1| diaminopimelate epimerase [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|418707703|ref|ZP_13268523.1| diaminopimelate epimerase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418713349|ref|ZP_13274076.1| diaminopimelate epimerase [Leptospira interrogans str. UI 08452]
gi|418725746|ref|ZP_13284362.1| diaminopimelate epimerase [Leptospira interrogans str. UI 12621]
gi|418730917|ref|ZP_13289393.1| diaminopimelate epimerase [Leptospira interrogans str. UI 12758]
gi|421087693|ref|ZP_15548529.1| diaminopimelate epimerase [Leptospira santarosai str. HAI1594]
gi|421104324|ref|ZP_15564919.1| diaminopimelate epimerase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421117384|ref|ZP_15577747.1| diaminopimelate epimerase [Leptospira interrogans serovar Canicola
str. Fiocruz LV133]
gi|421123069|ref|ZP_15583351.1| diaminopimelate epimerase [Leptospira interrogans str. Brem 329]
gi|421124951|ref|ZP_15585208.1| diaminopimelate epimerase [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421135184|ref|ZP_15595309.1| diaminopimelate epimerase [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|59797812|sp|Q72W63.1|DAPF_LEPIC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|45599221|gb|AAS68711.1| diaminopimelate epimerase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|400324141|gb|EJO76441.1| diaminopimelate epimerase [Leptospira interrogans serovar Pomona
str. Kennewicki LC82-25]
gi|400361587|gb|EJP17553.1| diaminopimelate epimerase [Leptospira interrogans str. FPW2026]
gi|409941056|gb|EKN86690.1| diaminopimelate epimerase [Leptospira interrogans str. 2002000624]
gi|409947907|gb|EKN97901.1| diaminopimelate epimerase [Leptospira interrogans serovar Pomona
str. Pomona]
gi|409951856|gb|EKO06370.1| diaminopimelate epimerase [Leptospira interrogans str. C10069]
gi|409960954|gb|EKO24703.1| diaminopimelate epimerase [Leptospira interrogans str. UI 12621]
gi|410011095|gb|EKO69223.1| diaminopimelate epimerase [Leptospira interrogans serovar Canicola
str. Fiocruz LV133]
gi|410020602|gb|EKO87402.1| diaminopimelate epimerase [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410343813|gb|EKO95008.1| diaminopimelate epimerase [Leptospira interrogans str. Brem 329]
gi|410365776|gb|EKP21169.1| diaminopimelate epimerase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410429942|gb|EKP74317.1| diaminopimelate epimerase [Leptospira santarosai str. HAI1594]
gi|410438082|gb|EKP87181.1| diaminopimelate epimerase [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410575355|gb|EKQ38373.1| diaminopimelate epimerase [Leptospira interrogans str. 2002000621]
gi|410580583|gb|EKQ48405.1| diaminopimelate epimerase [Leptospira interrogans str. 2002000623]
gi|410761011|gb|EKR27200.1| diaminopimelate epimerase [Leptospira interrogans serovar Bataviae
str. L1111]
gi|410765175|gb|EKR35877.1| diaminopimelate epimerase [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410772124|gb|EKR47318.1| diaminopimelate epimerase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410774479|gb|EKR54487.1| diaminopimelate epimerase [Leptospira interrogans str. UI 12758]
gi|410790432|gb|EKR84126.1| diaminopimelate epimerase [Leptospira interrogans str. UI 08452]
gi|455666266|gb|EMF31714.1| diaminopimelate epimerase [Leptospira interrogans serovar Pomona
str. Fox 32256]
gi|455790054|gb|EMF41944.1| diaminopimelate epimerase [Leptospira interrogans serovar Lora str.
TE 1992]
gi|456824184|gb|EMF72621.1| diaminopimelate epimerase [Leptospira interrogans serovar Canicola
str. LT1962]
Length = 281
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 172/289 (59%), Gaps = 19/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
L F K G+GND++ +D+ RN R+TPEQ K+ DRNFGIG+DGVIF G D+
Sbjct: 4 LKFTKMEGIGNDYVYIDSTRNDI--RLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFM 60
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK----- 192
M ++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++
Sbjct: 61 MDMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTSSKNPKIETGAGILEVDLKIGSGNKVDL 119
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V VDMG+P+L S +P + +++++ L++ T VSMGNPHCV F
Sbjct: 120 VSVDMGKPVLVPSQIP--VVWKNEETIIDQPLEIGDKNLKFTAVSMGNPHCVIFVDDS-- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
D+ + IGP E HS+FP R N EFV I L R WERGAG TLACGTGACA
Sbjct: 176 ----DEFPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACA 231
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V+VA L G + + +DL GG L I+W+E N + MTGPA +F G +
Sbjct: 232 VMVAGNLTGRSGKDVQIDLRGGTLRIQWQESGN-ILMTGPAREIFSGEI 279
>gi|338998337|ref|ZP_08637011.1| diaminopimelate epimerase [Halomonas sp. TD01]
gi|338764654|gb|EGP19612.1| diaminopimelate epimerase [Halomonas sp. TD01]
Length = 277
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 129/288 (44%), Positives = 169/288 (58%), Gaps = 13/288 (4%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNG-TDY 136
LHF K HGLGNDF++VD + R+ EQ +L DR FGIG D ++ P + D+
Sbjct: 2 LLHFTKMHGLGNDFMMVD-LVTQRARLRDEQIRQLADRRFGIGFDQLLVVEPPRDPEMDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K V T G +V +Q DG V+VD
Sbjct: 61 RYRIFNADGSEVENCGNGARCFARFVRD-QRLTHKHEIHVETAGGPLVLNVQHDGMVRVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P + +P A DQ + +DVDG + VSMGNPH V Q V
Sbjct: 120 MGRPRFNPATLP--FEAPGDQPL--HAVDVDGGTLELGVVSMGNPHAVL------QVECV 169
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
D + +GP E H FP R N F++++SPS++++RV+ERG+G TLACGTGACA V +
Sbjct: 170 DSAPVEHLGPLLEFHPRFPKRVNVGFMQVVSPSEIRLRVYERGSGETLACGTGACAAVAS 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
+ +G + TV LPGG L IEW + + + M GPA VF G V LN
Sbjct: 230 GIRQGLLKSPVTVHLPGGQLSIEWPDPEAPLVMVGPATRVFDGRVTLN 277
>gi|291524551|emb|CBK90138.1| diaminopimelate epimerase [Eubacterium rectale DSM 17629]
Length = 285
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 128/293 (43%), Positives = 175/293 (59%), Gaps = 21/293 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAA-KLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG GND++ V N E ++ P + + + DR+FGIG+DG+I P + D+
Sbjct: 1 MKFTKMHGCGNDYVYV---NLFEEKLGDPARVSIYVSDRHFGIGSDGLITIGPS-DKADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL----IVPEIQDDGK 192
MRI+N+DGSE EMCGNG+RC A+++ + L K +V TGAG+ + E +
Sbjct: 57 RMRIYNADGSEAEMCGNGIRCVAKYVYD-HKLTDKTEISVETGAGIKYLTLYVEENKVSQ 115
Query: 193 VKVDMGEPILKASDVPT----SLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGT 248
V+VDMGEPIL D+P + D V+ + +W++TCVSMGNPH V F
Sbjct: 116 VRVDMGEPILTPGDIPVVKADGSAYGDDYRVIDEPISAGNREWHMTCVSMGNPHAVVFVD 175
Query: 249 KEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
V L + GP FE+H +FP RTNTEFVEI+S ++ KMRVWERG+ T ACGT
Sbjct: 176 D------VAGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGT 229
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
G CA V+A +L + + V L GG L IE+ + NHV+MTGPA VF G +
Sbjct: 230 GTCATVMACILNKKTDNKVLVHLRGGDLTIEYIPKTNHVFMTGPATEVFSGEI 282
>gi|410658084|ref|YP_006910455.1| Diaminopimelate epimerase [Dehalobacter sp. DCA]
gi|410661074|ref|YP_006913445.1| Diaminopimelate epimerase [Dehalobacter sp. CF]
gi|409020439|gb|AFV02470.1| Diaminopimelate epimerase [Dehalobacter sp. DCA]
gi|409023430|gb|AFV05460.1| Diaminopimelate epimerase [Dehalobacter sp. CF]
Length = 278
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 127/288 (44%), Positives = 173/288 (60%), Gaps = 16/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ FVK HGLGNDFI +D+ E A +LC R FG+G DG+I +P + D M
Sbjct: 1 MDFVKMHGLGNDFICLDHFLFPTGMDYAETAVQLCHRQFGVGGDGLIVILPS-DVADARM 59
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ----DDGKVK 194
RIFN DGSEPEMCGNG+RCFA+++ E + + S + T AG++ +++ V
Sbjct: 60 RIFNPDGSEPEMCGNGIRCFAKYVYEAGYVQ-RDSLKIETLAGVLDVKLEICRGAVHHVT 118
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
V+MGEP L +P + + + +L+V G ++ + VSMGNPHC+ F
Sbjct: 119 VNMGEPCLDPIKIPVLAGTD---TALSQKLEVAGQEYIFSAVSMGNPHCIIF------TE 169
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
++ L +GP E H +FP +TN EFV++ + ++ ++VWERG G TLACGTGACA V
Sbjct: 170 DLELLPFETLGPAIEKHPLFPRKTNVEFVKVDNSGEITVKVWERGVGPTLACGTGACASV 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VAAVL G +R V LPGG L IEW +E V+MTGPA VF GS L
Sbjct: 230 VAAVLAGRTDRTVIVHLPGGDLKIEW-QEGQQVHMTGPAVCVFRGSTL 276
>gi|417767895|ref|ZP_12415830.1| diaminopimelate epimerase [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|400349340|gb|EJP01633.1| diaminopimelate epimerase [Leptospira interrogans serovar Bulgarica
str. Mallika]
Length = 281
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 172/289 (59%), Gaps = 19/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
L F K G+GND++ +D+ RN R+TPEQ K+ DRNFGIG+DGVIF G D+
Sbjct: 4 LKFTKMEGIGNDYVYIDSTRNDI--RLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFM 60
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK----- 192
M ++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++
Sbjct: 61 MDMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTSSKNPKIETGAGILEVDLKIGSGNKVDL 119
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V VDMG+P+L S +P + +++++ L++ T VSMGNPHCV F
Sbjct: 120 VSVDMGKPVLVPSQIP--VVWKNEETIIDQPLEIGDKNLKFTAVSMGNPHCVIFVDDS-- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
D+ + IGP E HS+FP R N EFV I L R WERGAG TLACGTGACA
Sbjct: 176 ----DEFPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACA 231
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V+VA L G + + +DL GG L I+W+E N + MTGPA +F G +
Sbjct: 232 VMVAGNLTGRSGKDVQIDLRGGTLRIQWQEAGN-ILMTGPAREIFSGEI 279
>gi|325662281|ref|ZP_08150896.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA]
gi|325471533|gb|EGC74754.1| diaminopimelate epimerase [Lachnospiraceae bacterium 4_1_37FAA]
Length = 279
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 176/289 (60%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITP--EQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K GLGND++ V N + ++ E A ++ DR+FG+G+DG+I P D+
Sbjct: 3 MKFTKMQGLGNDYVYV---NCLKEKVESPSEMARRVSDRHFGVGSDGLILICPS-ECADF 58
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
M+++N+DGS EMCGNG+RC +++ + L + +V T G+ + ++GKV
Sbjct: 59 EMKMYNADGSRGEMCGNGIRCVGKYVYDY-GLTDQTEISVETLGGIKHLSLTVEEGKVAL 117
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
KVDMG PI +P + + V + VDG ++ +TCVSMGNPH V + + Q
Sbjct: 118 VKVDMGSPIFVPEQIPVKVEGDH---AVNVPISVDGDEYRMTCVSMGNPHAVVY-LDDIQ 173
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
N++++K IGPKFEHH FP R NTEF ++ ++MRVWERG+G TLACGTGACA
Sbjct: 174 NMEIEK-----IGPKFEHHPCFPNRVNTEFARVLDRETVEMRVWERGSGETLACGTGACA 228
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V VA+++ G E TV L GG L IEW E N VYMTGPA VVF G +
Sbjct: 229 VAVASMVNGLTEDCVTVQLLGGNLKIEWDREKNVVYMTGPATVVFDGEL 277
>gi|417780273|ref|ZP_12428037.1| diaminopimelate epimerase [Leptospira weilii str. 2006001853]
gi|410779512|gb|EKR64126.1| diaminopimelate epimerase [Leptospira weilii str. 2006001853]
Length = 281
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 170/288 (59%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G+GND++ +D+ + R+TPEQ K+ DRNFGIG+DGVIF G D+ M
Sbjct: 4 LKFTKMEGIGNDYVYIDS-TQVDIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFMM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK-----V 193
++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++ V
Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTNSKNPKIETGAGVLEVDLKIGSGNKVDLV 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG+PIL S +P ++ +++++ ++ G T VSMGNPHCV F
Sbjct: 121 SVDMGKPILVPSKIP--INWKDEETIIDQMFEIAGKNLKFTAVSMGNPHCVIFVDD---- 174
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+ ++ IGP E H +FP R N EFV + R WERGAG TLACGTGACAV
Sbjct: 175 --CDQFPVSGIGPLIERHPIFPKRVNVEFVTVRGKDHFYQRTWERGAGETLACGTGACAV 232
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA L G + + +DL GG L I+W+E N V MTGPA +F G +
Sbjct: 233 AVAGNLTGRSGKEVKIDLRGGTLKIQWQESGN-VLMTGPAREIFSGEI 279
>gi|359729089|ref|ZP_09267785.1| diaminopimelate epimerase [Leptospira weilii str. 2006001855]
Length = 281
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 170/288 (59%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G+GND++ +D+ + R+TPEQ K+ DRNFGIG+DGVIF G D+ M
Sbjct: 4 LKFTKMEGIGNDYVYIDS-TQIDIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFMM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK-----V 193
++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++ V
Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTNSKNPKIETGAGVLEVDLKIGSGNKVDLV 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG+PIL S +P ++ +++++ ++ G T VSMGNPHCV F
Sbjct: 121 SVDMGKPILVPSKIP--INWKDEETIIDQMFEIAGKNLKFTAVSMGNPHCVIFVDD---- 174
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+ ++ IGP E H +FP R N EFV + R WERGAG TLACGTGACAV
Sbjct: 175 --CDQFPVSGIGPLIERHPIFPKRVNVEFVTVRGKDHFYQRTWERGAGETLACGTGACAV 232
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA L G + + +DL GG L I+W+E N V MTGPA +F G +
Sbjct: 233 AVAGNLTGRSGKEVKIDLRGGTLKIQWQESGN-VLMTGPAREIFSGEI 279
>gi|118581814|ref|YP_903064.1| diaminopimelate epimerase [Pelobacter propionicus DSM 2379]
gi|118504524|gb|ABL01007.1| diaminopimelate epimerase [Pelobacter propionicus DSM 2379]
Length = 278
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 129/292 (44%), Positives = 177/292 (60%), Gaps = 21/292 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNST--EPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K G GND++ V+ T +PR + A ++ +RNFGIG+DG+I MP D
Sbjct: 1 MKFTKMQGAGNDYVYVNCFEETVADPR---QVAIQVSNRNFGIGSDGLILIMPSTT-ADV 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDDGK-- 192
MR+FNSDGSE EMCGNG+RC A++ + + K+ T TGAG++ + DGK
Sbjct: 57 RMRMFNSDGSESEMCGNGIRCVAKYAFD-HGIVSKKEITAETGAGILALRLIAGSDGKIA 115
Query: 193 -VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
V+V+MG P L S++P + + VV +L + +N+TC SMGNPHCV F
Sbjct: 116 KVRVNMGPPRLARSEIP--MRGDAAPQVVGEQLTILDRTFNITCASMGNPHCVIFVDD-- 171
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
V ++ GP E+H +FP RTN EFV+IIS ++++ R WERGAG TLACGTG+
Sbjct: 172 ----VAGFPVSTYGPLIENHELFPNRTNVEFVQIISRTEVRQRTWERGAGETLACGTGSS 227
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
AV A VL G E+R L GG L++EW ED ++YMTGPA VF G ++L
Sbjct: 228 AVTAACVLNGLTEKRILNHLSGGDLEMEWA-EDGNIYMTGPAVEVFSGEIML 278
>gi|154483606|ref|ZP_02026054.1| hypothetical protein EUBVEN_01310 [Eubacterium ventriosum ATCC
27560]
gi|149735516|gb|EDM51402.1| diaminopimelate epimerase [Eubacterium ventriosum ATCC 27560]
Length = 277
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 124/287 (43%), Positives = 186/287 (64%), Gaps = 20/287 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT-PEQAAKLC-DRNFGIGADGVIFAMPGVNGTDY 136
+ F K G GND++ V N + +I P + +++ +R+FGIG+DG+I P + D+
Sbjct: 1 MKFTKMEGCGNDYVYV---NGFDTKIEDPNKLSEIVSNRHFGIGSDGLIVINPS-DVADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL--IVPEIQDDG--K 192
M ++N+DGSE +MCGNG+RC A+++ + + K + TV T +G+ +V ++DD
Sbjct: 57 KMSMYNADGSEGKMCGNGIRCVAKYVYD-NKMTDKTTITVETLSGIKTLVLNVEDDKVKT 115
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V+V+MG PIL+++ VP + + KD+ V+ + V+ ++ +TCVSMGNPH +TF
Sbjct: 116 VRVNMGSPILESAKVP--VVSEKDK-VIDEPVMVNNKEYRITCVSMGNPHAITFVDD--- 169
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
+D L++ IGP FE +FP + NTEF++++S +KMRVWERG+G TLACGTGACA
Sbjct: 170 ---IDSLDIEHIGPMFEKKEIFPEQVNTEFIQVVSRDVIKMRVWERGSGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVA VL G E + TV L GG L IE+ ++N VYMTGPA + F G
Sbjct: 227 SVVACVLNGLTEDKVTVKLLGGDLFIEYNRDENTVYMTGPARITFTG 273
>gi|153809864|ref|ZP_01962532.1| hypothetical protein RUMOBE_00245 [Ruminococcus obeum ATCC 29174]
gi|149834042|gb|EDM89122.1| diaminopimelate epimerase [Ruminococcus obeum ATCC 29174]
Length = 280
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 133/294 (45%), Positives = 185/294 (62%), Gaps = 23/294 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT-PEQAAKLC-DRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG+GND++ V N E ++ P AK DR+FGIG+DG+I P + D
Sbjct: 1 MKFTKMHGIGNDYVYV---NCFEETVSNPSAVAKFVSDRHFGIGSDGLILIKPS-DVADC 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ--DDGKV- 193
M ++N DGS+ MCGNG+RC A++ + +N K + +V T +G+ ++ DDGKV
Sbjct: 57 EMDMYNLDGSQGAMCGNGIRCVAKYAYDYGIVN-KTNISVATKSGIKYLDLTLGDDGKVA 115
Query: 194 --KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
KV+MG PIL + +P + + K+Q V+ L+VDG +++T VSMGNPH + + +
Sbjct: 116 LVKVNMGAPILTSRQIP--VVSTKEQ-VIDEPLNVDGTTYHITAVSMGNPHAIVY-MDDL 171
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+NL ++K IGPKFE+H FP R NTEFV++I L+MRVWERG+G TLACGTGAC
Sbjct: 172 RNLDIEK-----IGPKFENHIAFPDRINTEFVKVIDRHTLQMRVWERGSGETLACGTGAC 226
Query: 312 AVVVAAVLEG--HAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
AV VA+ L G ++ TV L GG L I W ++N VYMTGPA VF G + L
Sbjct: 227 AVAVASTLNGLVDEDQPVTVKLLGGDLQILWNRQENLVYMTGPATTVFDGEIFL 280
>gi|189426372|ref|YP_001953549.1| diaminopimelate epimerase [Geobacter lovleyi SZ]
gi|189422631|gb|ACD97029.1| Diaminopimelate epimerase [Geobacter lovleyi SZ]
Length = 278
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 173/290 (59%), Gaps = 17/290 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HG GND++ VD T E A K+ +RNFGIG+DG+I MP + D M
Sbjct: 1 MKFTKMHGAGNDYVYVDCFKETVDN-PAETAIKVSNRNFGIGSDGLILIMP-TDKADVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG-----KV 193
R+FNSDGSE EMCGNG+RC A++ A + K T TGAG++ ++ + +V
Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKY-AYDHGIVTKTEITAETGAGILTLQLFPNAENKVERV 117
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+V+MG P L ++P ++ VV EL V + +TCVSMGNPHC+ +
Sbjct: 118 RVNMGPPRLSREEIP--MNGTPAAQVVAEELTVLDKTFKITCVSMGNPHCIIYVDD---- 171
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
VD +A GP E+H +FP RTN EF++IIS +++K R WERGAG TLACGTGA AV
Sbjct: 172 --VDNFPVATYGPLIENHQLFPRRTNVEFIQIISRTEVKQRTWERGAGETLACGTGASAV 229
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA VL +R+ L GG L++EW E+ V+MTGPA VF G + L
Sbjct: 230 CVAGVLNNLTDRKILNHLAGGDLELEWV-ENGPVFMTGPATEVFSGEIAL 278
>gi|359684391|ref|ZP_09254392.1| diaminopimelate epimerase [Leptospira santarosai str. 2000030832]
gi|418745807|ref|ZP_13302143.1| diaminopimelate epimerase [Leptospira santarosai str. CBC379]
gi|418752908|ref|ZP_13309164.1| diaminopimelate epimerase [Leptospira santarosai str. MOR084]
gi|422004708|ref|ZP_16351922.1| diaminopimelate epimerase [Leptospira santarosai serovar Shermani
str. LT 821]
gi|409966591|gb|EKO34432.1| diaminopimelate epimerase [Leptospira santarosai str. MOR084]
gi|410793438|gb|EKR91357.1| diaminopimelate epimerase [Leptospira santarosai str. CBC379]
gi|417256649|gb|EKT86066.1| diaminopimelate epimerase [Leptospira santarosai serovar Shermani
str. LT 821]
Length = 281
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 124/288 (43%), Positives = 170/288 (59%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G+GND++ +D+ + + R+TPEQ K+ DRNFGIG+DGVIF G D+ M
Sbjct: 4 LKFTKMEGIGNDYVYIDSTRA-DIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFMM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK-----V 193
++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++ V
Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTNSKNPKIETGAGVLEVDLKIGSSNKVDFV 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG+PIL S VP + +++++ ++ G T VSMGNPHCV F
Sbjct: 121 SVDMGKPILVPSKVPVNWK--DEETIIDQTFEIAGKDLKFTAVSMGNPHCVIFVDD---- 174
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+ + IGP E H +FP R N EFV + R WERGAG TLACGTGACAV
Sbjct: 175 --CDQFPVKGIGPLIERHPIFPKRVNVEFVSVRGKDHFYQRTWERGAGETLACGTGACAV 232
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+VA L G + + +DL GG L I+W+E N V MTGPA +F G +
Sbjct: 233 MVAGNLTGRSGKDVKIDLRGGTLRIQWQESGN-VLMTGPAREIFSGEI 279
>gi|126666599|ref|ZP_01737577.1| diaminopimelate epimerase [Marinobacter sp. ELB17]
gi|126628987|gb|EAZ99606.1| diaminopimelate epimerase [Marinobacter sp. ELB17]
Length = 328
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/289 (45%), Positives = 168/289 (58%), Gaps = 13/289 (4%)
Query: 76 SGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGT 134
G L F K HGLGNDF++VD S R+ PE +L DR+FGIG D ++ P G+
Sbjct: 33 GGVLRFTKMHGLGNDFMVVDA-ISQMFRLRPEMIRELADRHFGIGFDQLLVVEPPGLPDV 91
Query: 135 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVK 194
D+ RIFN+DGSE E CGNG RCFARF+ + + L K+ V T G+I + DG VK
Sbjct: 92 DFRYRIFNADGSEVEQCGNGARCFARFVRD-QRLTNKKVMRVQTAGGIIELRVGKDGLVK 150
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG P L+ + VP S D+ LDV+G ++ VSMGNPH V
Sbjct: 151 VDMGVPRLEPATVPFS----ADEFAPVYNLDVNGQNIELSVVSMGNPHGVILTDD----- 201
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
VD +A +GP E H FPA+ N F++I+ S +++RV+ERG G TLACGTGACA V
Sbjct: 202 -VDSAPVATLGPLLEKHWRFPAKANIGFMQIVDRSHIRLRVFERGCGETLACGTGACAAV 260
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA L G + R V+LPGG L IEW+ V M GP VF G + L
Sbjct: 261 VAGCLRGLLDSRVEVELPGGRLIIEWQGLGAAVMMDGPVASVFEGQLRL 309
>gi|212702610|ref|ZP_03310738.1| hypothetical protein DESPIG_00637 [Desulfovibrio piger ATCC 29098]
gi|212674051|gb|EEB34534.1| diaminopimelate epimerase [Desulfovibrio piger ATCC 29098]
Length = 306
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 128/294 (43%), Positives = 168/294 (57%), Gaps = 21/294 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT----PEQAAKLCDRNFGIGADGVIFAMPGV--N 132
+ F K G GND++ +D S + R+ P A + DR++G+G+DG++ +P +
Sbjct: 11 IAFTKMEGCGNDYVYLDG-VSEDLRLAEGDIPVLARAVSDRHYGVGSDGLVLILPPTSPD 69
Query: 133 GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG- 191
D MR+FN+DGSE EMCGN RC RF E L + + T AG+ + + DD
Sbjct: 70 SADLRMRMFNADGSEAEMCGNASRCVGRFAWE-HALTDRPVIRLETLAGIKLLQRVDDAG 128
Query: 192 ----KVKVDMGEPILKASDVPT--SLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVT 245
+V VDMG P L +P +++ + + + V +W +TCVSMGNPH V
Sbjct: 129 GCPSRVCVDMGTPELARQRIPVCPDTASDPESPCIGQPIRVLDREWTMTCVSMGNPHAVV 188
Query: 246 FGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLA 305
F VD L+L +GP FEHH FP+RTNTEFV++I ++MRVWERGAG TLA
Sbjct: 189 FVDD------VDSLDLPVVGPAFEHHPWFPSRTNTEFVQLIDAGHVRMRVWERGAGETLA 242
Query: 306 CGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
CGTGACAV VA L GH R V L GG LDI W E H+ MTGPA VF G
Sbjct: 243 CGTGACAVAVACHLTGHTGREVAVQLRGGTLDIRWDERTGHILMTGPARTVFSG 296
>gi|418669772|ref|ZP_13231146.1| diaminopimelate epimerase [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|410754062|gb|EKR15717.1| diaminopimelate epimerase [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
Length = 281
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 128/292 (43%), Positives = 173/292 (59%), Gaps = 25/292 (8%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
L F K G+GND++ +D+ RN R+TPEQ K+ DRNFGIG+DGVIF G D+
Sbjct: 4 LKFTKMEGIGNDYVYIDSTRNDI--RLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFM 60
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK----- 192
M ++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++
Sbjct: 61 MDMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTSSKNPKIETGAGILEVDLKIGSGNKVDL 119
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V VDMG+P+L S +P + +++++ L++ T VSMGNPHCV F
Sbjct: 120 VSVDMGKPVLVPSQIP--VVWKNEETIIDQPLEIGDKNLKFTAVSMGNPHCVIF------ 171
Query: 253 NLKVDKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
VD N + IGP E HS+FP R N EFV I L R WERGAG TLACGTG
Sbjct: 172 ---VDDSNEFPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTG 228
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
ACAV+VA L G + + +DL GG L I+W+E N + MTGPA +F G +
Sbjct: 229 ACAVMVAGNLTGRSGKDVQIDLRGGTLRIQWQESGN-ILMTGPAREIFSGEI 279
>gi|197303586|ref|ZP_03168624.1| hypothetical protein RUMLAC_02314 [Ruminococcus lactaris ATCC
29176]
gi|197297320|gb|EDY31882.1| diaminopimelate epimerase [Ruminococcus lactaris ATCC 29176]
Length = 281
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/287 (43%), Positives = 175/287 (60%), Gaps = 20/287 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQA--AKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K GLGND++ V N + +I A ++ DR+FG+G+DG+I P D
Sbjct: 5 MKFTKMQGLGNDYVYV---NCFKEKIEDPSALAVRISDRHFGVGSDGLILINPS-KVADC 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL----IVPEIQDDGK 192
M ++N+DGS EMCGNG+RC +++ + L K++ +V T AG+ E K
Sbjct: 61 EMEMYNADGSRGEMCGNGIRCVGKYMYDY-GLTDKEAISVETLAGIKYLQFFIENGKVAK 119
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
VKVDMG PIL +++P + V + VDG ++ +TC+SMGNPH + + + +
Sbjct: 120 VKVDMGSPILTPAEIPVVAEGER---AVDEPIVVDGTEYRMTCISMGNPHAIVY-VDDVK 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
NL ++K IGP FE H FP R NTEFV+++ + ++MRVWERG+G TLACGTGACA
Sbjct: 176 NLPIEK-----IGPLFEKHERFPNRVNTEFVKVLDRNTVEMRVWERGSGETLACGTGACA 230
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VA +L G E + TV L GG L+IEW E N V+MTGPA+VVF G
Sbjct: 231 TAVACILNGLTEEKVTVKLLGGDLEIEWDREKNKVFMTGPAKVVFDG 277
>gi|410938796|ref|ZP_11370636.1| diaminopimelate epimerase [Leptospira noguchii str. 2006001870]
gi|410785997|gb|EKR74948.1| diaminopimelate epimerase [Leptospira noguchii str. 2006001870]
Length = 281
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 172/288 (59%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G+GND++ +D+ T+ +TPEQ K+ DRNFGIG+DGVIF G D+ M
Sbjct: 4 LKFTKMEGIGNDYVYIDS-TRTDIYLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFMM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK-----V 193
++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++ V
Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTNSKNPRIETGAGILEVDLKVGSGNKVDLV 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG+P+L S +P + +++++ L++ T VSMGNPHCV F
Sbjct: 121 SVDMGKPVLVPSRIP--IIWKNEETIIDQPLEIGDKNLKFTAVSMGNPHCVIFVDDS--- 175
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+ + IGP EH+S+FP R N EFV + L R WERGAG TLACGTGACAV
Sbjct: 176 ---DEFPVRGIGPLIEHYSIFPKRVNVEFVTVRGKDHLYQRTWERGAGETLACGTGACAV 232
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+VA L G + + +DL GG L I+W+E N + MTGPA +F G +
Sbjct: 233 MVAGNLTGRSGKDVKIDLRGGTLRIQWQESGN-ILMTGPAREIFSGEI 279
>gi|406912191|gb|EKD51847.1| Diaminopimelate epimerase [uncultured bacterium]
Length = 298
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/300 (43%), Positives = 167/300 (55%), Gaps = 25/300 (8%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HG GNDFI+++ + T P + + K+CDR FGIGAD V+ P D+ M
Sbjct: 3 ISFTKMHGTGNDFIILNGISQTLPPYLGQLSKKICDRRFGIGADQVLVVQPS-TAADFKM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK------ 192
IFN+DG E EMCGNG+RCFA+++ + + L + V T AGLI PEI D
Sbjct: 62 LIFNADGGEVEMCGNGIRCFAKYVRD-QGLTQQTELVVETAAGLIKPEIVLDHPRTIPST 120
Query: 193 --VKVDMGEPI-LKASDVPTSLSANKDQSVVKSELDVDGVKWN--------VTCVSMGNP 241
VKVDMGEP + A P + V +D W + +SMGNP
Sbjct: 121 LWVKVDMGEPQSIHAKTSPAVVQLPPWNIEVPITVDQVPASWRSDDQRRFFINEISMGNP 180
Query: 242 HCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAG 301
HCV F V+ + +GP FE+H FP RTN EFV+II +++K R WERG G
Sbjct: 181 HCVIFVHD------VEHYPVERVGPYFENHPRFPNRTNVEFVQIIDRNRIKQRTWERGVG 234
Query: 302 ATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
TLACGTGACA VVA+VL ++ TV L GG L+I+W + HV TGPA VF G +
Sbjct: 235 ETLACGTGACASVVASVLNNMTDKNVTVSLKGGDLEIKWSQRTGHVIKTGPATTVFEGEI 294
>gi|325261721|ref|ZP_08128459.1| diaminopimelate epimerase [Clostridium sp. D5]
gi|324033175|gb|EGB94452.1| diaminopimelate epimerase [Clostridium sp. D5]
Length = 282
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/288 (44%), Positives = 175/288 (60%), Gaps = 20/288 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K GLGND++ V N RI E A K+ DR+FGIG+DG+I P D+
Sbjct: 1 MKFTKMQGLGNDYVYV---NGFTERIENPSEVAVKVSDRHFGIGSDGLILINPS-KVADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
M ++N+DGS EMCGNG+RC +++ + L K V T G+ E+ ++GKV
Sbjct: 57 EMEMYNADGSRGEMCGNGMRCVGKYVYDY-GLTDKTEIAVETLGGIKYLELSVENGKVVQ 115
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
KVDMG+P LK++ +P + ++ V+ + VDG ++ +T VSMGNPH V +
Sbjct: 116 VKVDMGKPELKSALIPI---VSDEEMVINEPIIVDGKEYKMTGVSMGNPHTVVYMDD--- 169
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
++ L++ + GPKFE+H FP R NTEF ++ + MRVWERG+G TLACGTGACA
Sbjct: 170 ---IEHLDIEKTGPKFEYHERFPKRINTEFAAVLDRQTVSMRVWERGSGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
V V+++L G E TV L GG L I+W E + VYMTGPAEVVF G
Sbjct: 227 VAVSSILNGLTEDEVTVRLLGGDLLIKWDREKDTVYMTGPAEVVFDGE 274
>gi|398340709|ref|ZP_10525412.1| diaminopimelate epimerase [Leptospira kirschneri serovar Bim str.
1051]
gi|418678606|ref|ZP_13239880.1| diaminopimelate epimerase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418684362|ref|ZP_13245547.1| diaminopimelate epimerase [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418740732|ref|ZP_13297109.1| diaminopimelate epimerase [Leptospira kirschneri serovar Valbuzzi
str. 200702274]
gi|421088282|ref|ZP_15549107.1| diaminopimelate epimerase [Leptospira kirschneri str. 200802841]
gi|421129872|ref|ZP_15590072.1| diaminopimelate epimerase [Leptospira kirschneri str. 2008720114]
gi|400321796|gb|EJO69656.1| diaminopimelate epimerase [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|410002913|gb|EKO53362.1| diaminopimelate epimerase [Leptospira kirschneri str. 200802841]
gi|410359247|gb|EKP06356.1| diaminopimelate epimerase [Leptospira kirschneri str. 2008720114]
gi|410741061|gb|EKQ85774.1| diaminopimelate epimerase [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410752109|gb|EKR09085.1| diaminopimelate epimerase [Leptospira kirschneri serovar Valbuzzi
str. 200702274]
Length = 281
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/288 (42%), Positives = 172/288 (59%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G+GND++ +D+ T+ R+TPEQ K+ DRNFGIG+DGVIF G D+ M
Sbjct: 4 LKFTKMEGIGNDYVYIDS-TQTDIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFMM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK-----V 193
++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++ V
Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTSSKNPKIETGAGILEVDLKVGSGNKVSLV 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG+P+L S +P + +++++ L++ T VSMGNPHCV F
Sbjct: 121 SVDMGKPVLVPSQIP--VVWKNEETIIDQPLEIGDKNLKFTAVSMGNPHCVIFVDDS--- 175
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+ + IGP E + +FP R N EFV + + L R WERGAG TLACGTGACAV
Sbjct: 176 ---DEFPVRGIGPLIERNFIFPKRVNVEFVTVRGKNHLYQRTWERGAGETLACGTGACAV 232
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+VA L G + + +DL GG L I+W+E N + MTGPA +F G +
Sbjct: 233 MVAGSLTGRSGKDVQIDLKGGTLRIQWQESGN-ILMTGPAREIFSGEI 279
>gi|88861275|ref|ZP_01135907.1| diaminopimelate epimerase [Pseudoalteromonas tunicata D2]
gi|88816756|gb|EAR26579.1| diaminopimelate epimerase [Pseudoalteromonas tunicata D2]
Length = 276
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/292 (43%), Positives = 172/292 (58%), Gaps = 23/292 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
++F K HGLGNDF+++DN + I +Q KL DRNFGIG D ++ P D+
Sbjct: 2 LVNFSKMHGLGNDFMVIDNV-TQNVFIARDQIIKLADRNFGIGFDQLLMVEAPYDPDLDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDG+E E CGNG RCFARF+ ++ L + V T +G + I+ DG V V+
Sbjct: 61 HYRIFNSDGTEVEQCGNGARCFARFV-RMKGLTNRHKILVSTKSGNMTLHIEKDGLVSVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MG+P L+ +P + ++ + +++ V C VSMGNPHCV +
Sbjct: 120 MGQPKLEPHTIPFKAAKRENTYIFRAQ------DHTVFCGAVSMGNPHCV---------V 164
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+VD + A + GP E+H FP R N F++IISP +K+RVWERGAG TLACGTGAC
Sbjct: 165 EVDDITTAPVNVLGPLLENHERFPQRANIGFMQIISPEHIKLRVWERGAGETLACGTGAC 224
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A VV +L+ VDLPGG L++ W+ E + V MTGPAE VF G + L
Sbjct: 225 AAVVVGILQKKLAPHVQVDLPGGRLEVRWQGEGHSVRMTGPAEHVFDGQIAL 276
>gi|338813371|ref|ZP_08625500.1| diaminopimelate epimerase [Acetonema longum DSM 6540]
gi|337274730|gb|EGO63238.1| diaminopimelate epimerase [Acetonema longum DSM 6540]
Length = 281
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/288 (44%), Positives = 177/288 (61%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITP--EQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K+HG+GNDFI+V+ T I +QAA CDR+ GIGADG+I +P D
Sbjct: 1 MQFSKWHGIGNDFIIVNGLQETAATIAKLQQQAAFFCDRHLGIGADGLIIVLPS-EKADI 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQD--DGKV- 193
M+I NSDGSE EMCGNG RCF R++ E L K+ + T AG+I E+ D DG V
Sbjct: 60 RMKIINSDGSEAEMCGNGSRCFTRYVFE-NGLLLKRQMEIETLAGIIRTELVDGNDGNVI 118
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
+VD+GEP LK + +P + + + + V + + + T VS G PHCV F +
Sbjct: 119 VRVDLGEPKLKRAQIP--MQGDPNDTAVHVPIQIGEQTFYATAVSTGVPHCVIFV----E 172
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
+LK ++L +GPK E H++FP +TN EFV+++ ++ M+VWERGAG T+ACGTGA A
Sbjct: 173 DLK--GIDLGVLGPKVECHNLFPRKTNVEFVKVVGKNEAIMKVWERGAGITMACGTGASA 230
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
+VAA L G ERR + L GG L IEW +++N V ++G A VF G
Sbjct: 231 TLVAAALNGLTERRAVIHLDGGDLSIEW-DQNNRVILSGTATQVFQGK 277
>gi|386289580|ref|ZP_10066709.1| diaminopimelate epimerase [gamma proteobacterium BDW918]
gi|385277398|gb|EIF41381.1| diaminopimelate epimerase [gamma proteobacterium BDW918]
Length = 276
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 171/289 (59%), Gaps = 19/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVI-FAMPGVNGTDYT 137
L F K HGLGNDF+++D + ++ P K+ DR+FGIG D V+ +P D+
Sbjct: 3 LRFTKMHGLGNDFVVID-LITQRFKLKPHHIRKIADRHFGIGCDQVLAVEIPTQPDVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI+N++GSE E CGNG RCFAR+I + + L GK+ V T AG+I E+ + V+VDM
Sbjct: 62 YRIYNAEGSEVEQCGNGARCFARYIRD-KRLTGKERIKVETLAGIIELEVTETRHVRVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P+L +P + + + L ++GV+W V VSMGNPH + L VD
Sbjct: 121 GAPVLDPKRIPFTAESQAADYL----LAINGVEWRVGAVSMGNPHVI---------LPVD 167
Query: 258 KLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
++ +AE+GP E H FP R N F++I+ +K+RV+ERG G TLACGTGACA V
Sbjct: 168 DVDTAPVAEVGPIAEQHPRFPQRVNVGFMQIVDRDTIKLRVFERGVGETLACGTGACAAV 227
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V+ +++G TV LPGG L IEW+ V MTGPA VF G + +
Sbjct: 228 VSGIVQGKLNPEVTVHLPGGSLSIEWQGAGQPVIMTGPATTVFEGQIQI 276
>gi|344343128|ref|ZP_08773997.1| Diaminopimelate epimerase [Marichromatium purpuratum 984]
gi|343805059|gb|EGV22956.1| Diaminopimelate epimerase [Marichromatium purpuratum 984]
Length = 276
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/288 (43%), Positives = 170/288 (59%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAAKLCDRNFGIGADGVIFAMP-GVNGTD 135
+ F K HGLGNDF++ D + RIT PE+ +L DR FG+G D ++ P + GT+
Sbjct: 3 VRFTKMHGLGNDFVVFD---AVRQRITLDPERLRRLADRRFGVGCDQILLVEPPRLPGTE 59
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ RIFN+DGSE E CGNG RCFARF+ E + L V T AG I ++ DG V+V
Sbjct: 60 FHYRIFNADGSEVEQCGNGARCFARFVRE-QGLTEHDEIPVGTAAGAIRLHLEADGLVRV 118
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
+MG P L ++P + +L+V G + VSMGNPH V
Sbjct: 119 NMGRPRLAPVEIPF----QAEHEAPLYDLEVAGEHHQIGAVSMGNPHAVLLVED------ 168
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
V+ +A +GP EHH FP R N F++ ++ +++RV ERGAG TLACGTGACA VV
Sbjct: 169 VETAPVASLGPAIEHHPRFPQRVNVGFMQRLAGDAIRLRVHERGAGETLACGTGACAAVV 228
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ L G + R VDLPGG L I+W+ D+ V+MTGPAE VF+G ++L
Sbjct: 229 SGRLRGLLDERVRVDLPGGGLIIDWRSPDDVVWMTGPAESVFHGEIVL 276
>gi|418721243|ref|ZP_13280427.1| diaminopimelate epimerase [Leptospira borgpetersenii str. UI 09149]
gi|410742310|gb|EKQ91059.1| diaminopimelate epimerase [Leptospira borgpetersenii str. UI 09149]
Length = 281
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 123/290 (42%), Positives = 171/290 (58%), Gaps = 17/290 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G+GND+I +D+ + R+TPEQ K+ +RNFGIG+DGVIF G D+ M
Sbjct: 4 LKFTKMEGIGNDYIYIDSTQAN-IRLTPEQIQKISNRNFGIGSDGVIFIRNSKQG-DFMM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD-- 196
++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++ KVD
Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTNSKNPKIETGAGVLEVDLKIGSGNKVDFV 120
Query: 197 ---MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
MG+PIL S +P + +++++ ++ G T VSMGNPHCV F
Sbjct: 121 SVNMGKPILVPSKIPVNWK--DEEAIIDQTFEIAGKNLKFTAVSMGNPHCVIFVDD---- 174
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+ + IGP E H +FP R N EFV + R WERGAG TLACGTGACAV
Sbjct: 175 --CDQFPVTGIGPLIERHPIFPKRINVEFVTVRGKDHFYQRTWERGAGETLACGTGACAV 232
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA L G + + +DL GG L I+W+E N V MTGPA+ +F G +++
Sbjct: 233 TVAGNLTGKSGKEVKIDLRGGTLRIQWQESGN-VLMTGPAKEIFSGEIVV 281
>gi|456864661|gb|EMF83053.1| diaminopimelate epimerase [Leptospira weilii serovar Topaz str.
LT2116]
Length = 281
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 171/288 (59%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G+GND++ +D+ + + R+TPEQ K+ +RNFGIG+DGVIF G D+ M
Sbjct: 4 LKFTKMEGIGNDYVYIDSTQA-DIRLTPEQIQKISNRNFGIGSDGVIFIRNSKQG-DFMM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ--DDGKV--- 193
++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++ D KV
Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTNSKNPKIETGAGVLEVDLKIGSDNKVDFV 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG+PIL S VP ++ +++++ ++ G T +SMGNPHCV F
Sbjct: 121 SVDMGKPILTPSKVP--INWKDEETIIDQMFEIAGKNLKFTAISMGNPHCVIFVDD---- 174
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+ + IGP E H +FP R N EFV + R WERGAG TLACGTGACAV
Sbjct: 175 --CDQFPVNGIGPLIERHPIFPKRVNVEFVTVRGKDHFYQRTWERGAGETLACGTGACAV 232
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA L G + + +DL GG L I+W +E V MTGPA +F G +
Sbjct: 233 AVAGNLTGRSGKEVKIDLRGGALRIQW-QESGSVLMTGPAREIFSGEI 279
>gi|347540044|ref|YP_004847469.1| diaminopimelate epimerase [Pseudogulbenkiania sp. NH8B]
gi|345643222|dbj|BAK77055.1| diaminopimelate epimerase [Pseudogulbenkiania sp. NH8B]
Length = 276
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 128/287 (44%), Positives = 169/287 (58%), Gaps = 15/287 (5%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDY 136
L F K HGLGNDF+++D R + +TPE+ +L R FGIG D ++ P G + D+
Sbjct: 3 LKFSKMHGLGNDFMVIDGVRQHVD--LTPEKIKELGHRQFGIGFDQLLLVEPSGSSENDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+AE + L+ K++ V T G+IVP++ DG V VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVAE-QGLSAKEAIRVETAKGVIVPQLLADGTVTVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P K +++P + + + LD G +++ VSMGNPH V V
Sbjct: 120 MGVPRFKPAEIPFVAA----EEALTYPLDAAGRLCDISVVSMGNPHAVQVVAD------V 169
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
D +AE+GP E H FP R N F++I+S ++++RV+ERGAG TLACGTGACA VVA
Sbjct: 170 DTFPVAELGPAIELHPRFPERVNAGFMQIVSREEIRLRVYERGAGETLACGTGACAAVVA 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ G + V GG L I W V MTGPA VF G + L
Sbjct: 230 GIRRGLLDHTVKVHTRGGDLSIRWDGVGLPVLMTGPAVTVFTGEISL 276
>gi|322417972|ref|YP_004197195.1| diaminopimelate epimerase [Geobacter sp. M18]
gi|320124359|gb|ADW11919.1| diaminopimelate epimerase [Geobacter sp. M18]
Length = 276
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/288 (44%), Positives = 177/288 (61%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K G GND++ V+ T + + A K+ +RNFGIG+DG+I MP D M
Sbjct: 1 MKFTKMQGAGNDYVYVNCFEET-VQDPAKVAIKVSNRNFGIGSDGLILIMPS-EVADVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI---QDDG--KV 193
R+FNSDGSE EMCGNG+RC A++ + + GK+ T TGAG++ ++ QD KV
Sbjct: 59 RMFNSDGSESEMCGNGIRCVAKYAYDHGIVAGKE-ITAETGAGILTLQLFTGQDSKVEKV 117
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+V+MG P L ++P + N D+ V+ L++ +++TC SMGNPHCV F
Sbjct: 118 RVNMGPPRLTRKEIP--MLGNPDEKVINEPLNILHSTFHITCASMGNPHCVIFVDD---- 171
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
VDK + + GP E+H +FP RTN EFV++IS S+++ R WERGAG TLACGTG+ AV
Sbjct: 172 --VDKFPVEKYGPVIENHEMFPRRTNVEFVQVISRSEVRQRTWERGAGETLACGTGSSAV 229
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
A VL G ++ L GG L++EW ED ++YMTGPA VF G +
Sbjct: 230 TAACVLNGLTGKKILNHLSGGDLEMEWS-EDGNIYMTGPAVEVFSGEI 276
>gi|24212783|ref|NP_710264.1| diaminopimelate epimerase [Leptospira interrogans serovar Lai str.
56601]
gi|386072561|ref|YP_005986878.1| diaminopimelate epimerase [Leptospira interrogans serovar Lai str.
IPAV]
gi|29839327|sp|Q8F9V5.1|DAPF_LEPIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|24193430|gb|AAN47282.1|AE011200_1 diaminopimelate epimerase [Leptospira interrogans serovar Lai str.
56601]
gi|353456350|gb|AER00895.1| diaminopimelate epimerase [Leptospira interrogans serovar Lai str.
IPAV]
Length = 281
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 170/288 (59%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G+GND++ +D+ + R+TPEQ K+ DRNFGIG+DGVIF G D+ M
Sbjct: 4 LKFTKMEGIGNDYVYIDS-TRNDIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFMM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK-----V 193
++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++ V
Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTSSKNPKIETGAGILEVDLKIGSGNKVDLV 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG+P+L S +P + +++++ L++ T VSMGNPHCV F
Sbjct: 121 SVDMGKPVLVPSQIP--VVWKNEETIIDQPLEIGDKNLKFTAVSMGNPHCVIFVDDS--- 175
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+ + IGP E HS+FP R N EFV I L R WERGAG TLACGTGACAV
Sbjct: 176 ---DEFPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACAV 232
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+VA L + + +DL GG L I+W+E N + MTGPA +F G +
Sbjct: 233 MVAGNLTRRSGKDVQIDLRGGTLRIQWQESGN-ILMTGPAREIFSGEI 279
>gi|296120458|ref|YP_003628236.1| diaminopimelate epimerase [Planctomyces limnophilus DSM 3776]
gi|296012798|gb|ADG66037.1| diaminopimelate epimerase [Planctomyces limnophilus DSM 3776]
Length = 280
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 127/289 (43%), Positives = 177/289 (61%), Gaps = 23/289 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HG+GND++ V+ P P+ A + +R GIG DG+I P G D M
Sbjct: 1 MRFTKMHGIGNDYVYVNLFAEKLPLAAPDLARIVSNRYKGIGGDGLILIGPSERG-DARM 59
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDDGK---V 193
++FN+DGSE EMCGNGVRC A+++ + + K + TG G++ ++ GK V
Sbjct: 60 QMFNADGSESEMCGNGVRCVAKYVYD-HGIAKKPELRIETGRGVLTLQMFAGSSGKAERV 118
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+V+MG PILK++D+PT+L + V L V +VTCVSMGNPHCVTF
Sbjct: 119 RVNMGTPILKSADIPTALPGDPP---VNQPLVVGDKTISVTCVSMGNPHCVTF------- 168
Query: 254 LKVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
VD+L A + GP+ E H+ FP R N EF +++S +++++RVWERG+G T ACGTGA
Sbjct: 169 --VDELTDAWVLGLGPQVEVHAAFPRRVNAEFAQVLSRTEIQLRVWERGSGETQACGTGA 226
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
CA +VA VL G + + + LPGG L+IEW +E V+MTGPA VF G
Sbjct: 227 CATLVAGVLSGRTDHQALIHLPGGDLEIEWPDE-KEVFMTGPATEVFTG 274
>gi|358449863|ref|ZP_09160340.1| diaminopimelate epimerase [Marinobacter manganoxydans MnI7-9]
gi|385329989|ref|YP_005883940.1| diaminopimelate epimerase [Marinobacter adhaerens HP15]
gi|311693139|gb|ADP96012.1| diaminopimelate epimerase [Marinobacter adhaerens HP15]
gi|357225912|gb|EHJ04400.1| diaminopimelate epimerase [Marinobacter manganoxydans MnI7-9]
Length = 304
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 130/294 (44%), Positives = 172/294 (58%), Gaps = 16/294 (5%)
Query: 73 RRESG-FLHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGVIFAMP- 129
RR G L F K HGLGNDF++VD ++P R+ PE +L +RNFGIG D ++ P
Sbjct: 5 RRTQGPMLRFTKMHGLGNDFMVVDA--ISQPFRLRPEMIRELANRNFGIGFDQLLVVEPP 62
Query: 130 GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQD 189
G+ D+ RIFN+DGSE E CGNG RCFARF+ + + L K+ V T G+I +
Sbjct: 63 GLPDVDFRYRIFNADGSEVEQCGNGARCFARFVRD-QRLTNKKVIRVQTAKGVIELRVGR 121
Query: 190 DGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTK 249
+G V V+MG P +P + KD V DVDG ++ +SMGNPH V
Sbjct: 122 EGMVMVNMGVPEFNPPAIPFAADRRKDVYTV----DVDGQTVELSALSMGNPHGVLLVED 177
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
VD+ + +GPK E H FPAR N F++I+ + +++RV+ERG+G TLACG+G
Sbjct: 178 ------VDQAPVETLGPKLERHPRFPARANIGFLQILDRTHVRLRVFERGSGETLACGSG 231
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
ACA VVA L G + R V+L GGPL IEW+ E V M GPA VF G + L
Sbjct: 232 ACAAVVAGCLRGLLDARVEVELRGGPLVIEWQGEGTPVMMEGPATSVFEGQLRL 285
>gi|399907893|ref|ZP_10776445.1| diaminopimelate epimerase [Halomonas sp. KM-1]
Length = 277
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 125/290 (43%), Positives = 171/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
LHF K HGLGNDF+++D + R+ EQ KL DR FGIG D ++ P + D+
Sbjct: 2 LLHFTKMHGLGNDFMVID-LITQRARLRDEQIRKLADRRFGIGFDQLLVVEPPRSPDMDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T G + + DD ++ VD
Sbjct: 61 RYRIFNADGSEVENCGNGARCFARFVLD-QRLTHKREIHVETAGGPLTLVVNDDDQITVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P + PT+L + + L+VDG ++ + VSMGNPH V L+V
Sbjct: 120 MGTPRFE----PTALPFDAAEDRPLHALEVDGERYEIGAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D ++ A +GP E H FP R N F++++SP ++++RV+ERG G TLACGTGACA
Sbjct: 167 DDVDSAPVERLGPLIERHPRFPRRVNAGFMQVVSPHEIRLRVFERGTGETLACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + + +G E TV L GG L IEW ++ + MTGPAE VF G + L
Sbjct: 227 VASGIRQGLLESPVTVHLRGGDLRIEWAGDETPLLMTGPAERVFEGRIAL 276
>gi|365838877|ref|ZP_09380134.1| diaminopimelate epimerase [Anaeroglobus geminatus F0357]
gi|364566387|gb|EHM44079.1| diaminopimelate epimerase [Anaeroglobus geminatus F0357]
Length = 280
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 175/286 (61%), Gaps = 17/286 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ FVK HGLGNDF+ ++N++ + + E A +C R+ GIGADG+I + G + D M
Sbjct: 1 MKFVKMHGLGNDFVFIENKDGRDKNFS-ELARCMCKRHTGIGADGLII-IAGSDAADVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-----QDDGKV 193
RI N+DGSE EMCGNG+RCFA+++ + + + K F+V T AG++ P+I D G V
Sbjct: 59 RIINADGSEAEMCGNGIRCFAKYVYDSKIIT-KTEFSVETLAGIMKPKIIVDKNGDAGLV 117
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
++MG+P +P + SA V+ E+ V G W +T + +G PH VT+
Sbjct: 118 TINMGKPFTDRGSIPMAGSAG---PVLNEEITVGGEPWKITSLFLGVPHTVTYVND---- 170
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V+ +++ + GP F+ H VFP TN F E+I +K+R WERGAGATLACGTG+C+
Sbjct: 171 --VEAVDINKWGPLFKTHEVFPKNTNVNFTELIDDKTIKVRTWERGAGATLACGTGSCSA 228
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
V++ L G+ R V L G L +E+ E+D +VYMTGPA V F G
Sbjct: 229 AVSSFLNGYTGRNVDVQLYLGSLHVEYNEDDGNVYMTGPAAVSFTG 274
>gi|224542137|ref|ZP_03682676.1| hypothetical protein CATMIT_01312 [Catenibacterium mitsuokai DSM
15897]
gi|224524974|gb|EEF94079.1| diaminopimelate epimerase [Catenibacterium mitsuokai DSM 15897]
Length = 279
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 127/291 (43%), Positives = 178/291 (61%), Gaps = 25/291 (8%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQ-AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
L F+K G+GND++ D N P T E K+ +R+ GIG+DGVI +P D+
Sbjct: 1 MLKFLKMEGIGNDYVYFDGINQDVP--TDETFIKKVSNRHIGIGSDGVIIILPS-ETCDF 57
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKVK- 194
MR+FN DGSE +MCGNG+RCF++F+ + + L K + + T AG+ E+ +DGKV
Sbjct: 58 RMRMFNLDGSEGKMCGNGIRCFSKFVYD-QGLTDKTTLKIETLAGIRTCELNVEDGKVTS 116
Query: 195 --VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
VDMGEPI SD+P + S +V + +++DG + T VSMGNPH + +
Sbjct: 117 VCVDMGEPITLCSDIPVNYSK---VEMVNAPIEIDGNTYYCTAVSMGNPHVIQY------ 167
Query: 253 NLKVDKLN--LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
VD L+ + IGPKFEH S+FP NTEFV+++ LKMRVWERG+G T+ACGTGA
Sbjct: 168 ---VDTLDFDIEAIGPKFEHASLFPESVNTEFVKVVDREHLKMRVWERGSGETMACGTGA 224
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
CAV+ A+ L + + V+L GG L IE + D ++MTGPA F G++
Sbjct: 225 CAVMYASYLNNKCDEKVDVELLGGHLQIELR--DKKIFMTGPARTTFEGTL 273
>gi|83643200|ref|YP_431635.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396]
gi|123535219|sp|Q2SQ64.1|DAPF_HAHCH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|83631243|gb|ABC27210.1| diaminopimelate epimerase [Hahella chejuensis KCTC 2396]
Length = 276
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 130/288 (45%), Positives = 170/288 (59%), Gaps = 19/288 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDY 136
+ F K HGLGNDF++VD S PEQ +L DRNFG+G D ++ P G D+
Sbjct: 2 LIKFTKMHGLGNDFMVVD-LISQHAHFRPEQVRRLADRNFGVGFDQLLIVEPPGRPDADF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ E L K++ V T G+I + DG V VD
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVKE-NRLTNKKNIRVETKKGIIELIVNKDGLVTVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P A +++ ++V+GV + ++ VSMGNPH V L V
Sbjct: 120 MGAPRLAPADIP--FVAETQEAI--YPIEVNGVMYEISAVSMGNPHGV---------LVV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A ++G E+H FP R N F++++ K+RV+ERGAG TLACGTGACA
Sbjct: 167 DDVNKAPVHKLGKALENHPRFPERANIGFLQVVHRRFAKLRVFERGAGETLACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VVA L G +R+ + LPGG L I W+ E + V MTGPA VF G V
Sbjct: 227 VVAGRLRGLLDRKVEIKLPGGNLKISWEGEGHPVMMTGPAVRVFDGQV 274
>gi|300087803|ref|YP_003758325.1| diaminopimelate epimerase [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527536|gb|ADJ26004.1| diaminopimelate epimerase [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 291
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 127/294 (43%), Positives = 172/294 (58%), Gaps = 19/294 (6%)
Query: 79 LHFVKYHGLGNDFILVD-NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K H LGNDFIL++ + +++E PE A CDR+FGIG DG++ MP DY
Sbjct: 1 MDFTKLHSLGNDFILIEGDLDNSE---WPETAVWACDRHFGIGGDGLLVLMPS-QKADYR 56
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ---DDGKVK 194
MRIFN+DGSE E CGNG+RC ++I E + + KQ T+ T AG+ I D +K
Sbjct: 57 MRIFNNDGSEAEACGNGLRCLVKYILEFKEQD-KQELTIETAAGVRKATISGNTSDPDIK 115
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSE----LDVDGVKWNVTCVSMGNPHCVTFGTKE 250
MGEPIL+ +P + K + L V+G + + VSMGNPH + F +
Sbjct: 116 TGMGEPILETIRIPVEIEDGKGHELCGMTSGYPLSVNGQEHTLAFVSMGNPHAIEFIESD 175
Query: 251 GQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
++ L ++GP E HS+FP+ TN E +I S ++MRVWERG G TLACG+GA
Sbjct: 176 -----LEAFPLGDVGPSIEKHSMFPSHTNYEIARVIDNSHIEMRVWERGVGETLACGSGA 230
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
CAVVVA+ + G E + + LPGG L EW E VY+TG A+VVF G+ N
Sbjct: 231 CAVVVASWIMGLTEGQVDIKLPGGELKAEWA-ETGEVYLTGRAQVVFSGNTQGN 283
>gi|167747179|ref|ZP_02419306.1| hypothetical protein ANACAC_01893 [Anaerostipes caccae DSM 14662]
gi|167654139|gb|EDR98268.1| diaminopimelate epimerase [Anaerostipes caccae DSM 14662]
Length = 285
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 126/297 (42%), Positives = 180/297 (60%), Gaps = 19/297 (6%)
Query: 73 RRESGFLHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAAKLC-DRNFGIGADGVIFAMPG 130
+ S + F K HG GND++ V N E I P + AK DR+FGIG+DG+I P
Sbjct: 2 KTRSDSMKFTKMHGCGNDYVYV---NCFEETIENPNETAKFVSDRHFGIGSDGMICIHPS 58
Query: 131 VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-D 189
+ D+ M ++NSDG+E MCGNGVRC A+++ + L K + T+ T G+ ++ +
Sbjct: 59 -DKADFRMAMYNSDGTEGAMCGNGVRCIAKYVYDY-GLTDKTTITIETKGGIKELDLTVE 116
Query: 190 DGKV---KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTF 246
DGKV VDM P+L+A +P + ++++ V+ + VDG ++ +TCVSMGNPH V F
Sbjct: 117 DGKVTWVNVDMEAPVLEADKIP--VIYDEEKKVIDKPVIVDGREYRITCVSMGNPHGVVF 174
Query: 247 GTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLAC 306
VD L++ ++GP FEHH +FP R NTEF++++ ++MRVWERGAG TLAC
Sbjct: 175 VDS------VDDLDIEKLGPMFEHHPMFPDRVNTEFIQVVDDHTIRMRVWERGAGETLAC 228
Query: 307 GTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
GTGACA A+ L + V L GG L IE+ EE + ++M GPA VF G + L
Sbjct: 229 GTGACASAYASYLNQKTGNKVLVHLLGGDLQIEYDEEKHTIFMKGPATKVFDGEIDL 285
>gi|116329548|ref|YP_799268.1| diaminopimelate epimerase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116329863|ref|YP_799581.1| diaminopimelate epimerase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|418735573|ref|ZP_13291983.1| diaminopimelate epimerase [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|421095222|ref|ZP_15555935.1| diaminopimelate epimerase [Leptospira borgpetersenii str.
200801926]
gi|122282362|sp|Q04W97.1|DAPF_LEPBJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|122282673|sp|Q04X60.1|DAPF_LEPBL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|116122292|gb|ABJ80335.1| Diaminopimelate epimerase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116123552|gb|ABJ74823.1| Diaminopimelate epimerase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|410361932|gb|EKP12972.1| diaminopimelate epimerase [Leptospira borgpetersenii str.
200801926]
gi|410748707|gb|EKR01601.1| diaminopimelate epimerase [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|456890932|gb|EMG01702.1| diaminopimelate epimerase [Leptospira borgpetersenii str.
200701203]
Length = 281
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 169/288 (58%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G+GND+I +D+ + R+TPEQ K+ +RNFGIG+DGVIF G D+ M
Sbjct: 4 LKFTKMEGIGNDYIYIDSTQAN-IRLTPEQIQKISNRNFGIGSDGVIFIRNSKQG-DFMM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD-- 196
++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++ KVD
Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTNSKNPKIETGAGVLEVDLKIGSGNKVDFV 120
Query: 197 ---MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
MG+PIL S +P + +++++ ++ G T VSMGNPHCV F
Sbjct: 121 SVNMGKPILVPSKIPVNWK--DEEAIIDQTFEIAGKNLKFTAVSMGNPHCVIFVDD---- 174
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+ + IGP E H +FP R N EFV + R WERGAG TLACGTGACAV
Sbjct: 175 --CDQFPVTGIGPLIERHPIFPKRINVEFVTVRGKDHFYQRTWERGAGETLACGTGACAV 232
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA L G + + +DL GG L I+W+E N V MTGPA+ +F G +
Sbjct: 233 TVAGNLTGKSGKEVKIDLRGGTLRIQWQESGN-VLMTGPAKEIFSGEI 279
>gi|421099424|ref|ZP_15560076.1| diaminopimelate epimerase [Leptospira borgpetersenii str.
200901122]
gi|410797409|gb|EKR99516.1| diaminopimelate epimerase [Leptospira borgpetersenii str.
200901122]
Length = 296
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 120/288 (41%), Positives = 170/288 (59%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G+GND++ +D+ + + R+TPEQ K+ +RNFGIG+DGVIF G D+ M
Sbjct: 19 LKFTKMEGIGNDYVYIDSTQA-DIRLTPEQIQKISNRNFGIGSDGVIFIRNSKQG-DFMM 76
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK-----V 193
++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++ V
Sbjct: 77 DMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTNSKNPKIETGAGVLEVDLKIGSGNKVDFV 135
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG+PIL S +P ++ +++++ ++ G T VSMGNPHCV F
Sbjct: 136 SVDMGKPILVPSKIP--VNWKDEEAIIDQAFEIAGKNLKFTAVSMGNPHCVIFVDD---- 189
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+ ++ IGP E H +FP R N EFV + R WERGAG TLACGTGACAV
Sbjct: 190 --CDQFPVSGIGPLIERHLIFPKRVNVEFVTVRGKDHFYQRTWERGAGETLACGTGACAV 247
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA L G + + +DL GG L I+W +E + MTGPA +F G +
Sbjct: 248 TVAGSLTGRSGKEVKIDLRGGTLKIQW-QESGSILMTGPAREIFSGEI 294
>gi|317501548|ref|ZP_07959744.1| diaminopimelate epimerase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088590|ref|ZP_08337501.1| diaminopimelate epimerase [Lachnospiraceae bacterium 3_1_46FAA]
gi|336440479|ref|ZP_08620066.1| diaminopimelate epimerase [Lachnospiraceae bacterium 1_1_57FAA]
gi|316897059|gb|EFV19134.1| diaminopimelate epimerase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407547|gb|EGG87047.1| diaminopimelate epimerase [Lachnospiraceae bacterium 3_1_46FAA]
gi|336012924|gb|EGN42815.1| diaminopimelate epimerase [Lachnospiraceae bacterium 1_1_57FAA]
Length = 277
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 130/286 (45%), Positives = 179/286 (62%), Gaps = 15/286 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K G+GND++ V+ T + E A K+ DR++G+G+DG+I P + D+ M
Sbjct: 1 MKFTKMQGIGNDYVYVNCLQETIENPS-ELAKKISDRHYGVGSDGLIMINPS-DKADFEM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV---K 194
++N+DGS EMCGNG+RC A+++ + L K S +V T AG+ ++ +DGKV K
Sbjct: 59 EMYNADGSRGEMCGNGIRCVAKYVYDY-GLTDKTSISVETLAGIKYLDLTVEDGKVVLVK 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG+P+L+ +VP ++ + V+ + VDG ++ +TCVSMGNPH V F ++
Sbjct: 118 VDMGKPMLRPEEVPV---VSEKEEVIDEPITVDGQEYRMTCVSMGNPHAVVFIDQD---- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V + L +G KFE+H FP R NTEFV ++ +MRVWERG+G TLACGTGACAV
Sbjct: 171 -VKEFPLETVGVKFENHERFPKRVNTEFVNVLDRHTAQMRVWERGSGETLACGTGACAVA 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
VA L G E TV L GG L I+W E N VYMTGPAEVVF G
Sbjct: 230 VACALNGLTEDEVTVKLLGGDLQIKWDREKNTVYMTGPAEVVFDGE 275
>gi|254788014|ref|YP_003075443.1| diaminopimelate epimerase [Teredinibacter turnerae T7901]
gi|259595063|sp|C5BUL6.1|DAPF_TERTT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|237685672|gb|ACR12936.1| diaminopimelate epimerase [Teredinibacter turnerae T7901]
Length = 276
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 170/289 (58%), Gaps = 19/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HGLGNDF+++D S + ITPE+A KL DR+FG+G D V+ P D+
Sbjct: 3 LRFTKMHGLGNDFVMIDAI-SQKVTITPERARKLADRHFGVGCDQVLVVESPDNPDADFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE E CGNG RCFA F+ + L K V T AGL+ + DD +V V+M
Sbjct: 62 YRIFNNDGSEVENCGNGARCFAVFVRQ-RQLTAKSDIVVETAAGLLRLHVLDDNQVTVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P+L + +P + + L +D ++ ++ VSMGNPH VT VD
Sbjct: 121 GVPVLAPAQIPFVTPHEQPEY----PLQLDNMEITISAVSMGNPHAVTL---------VD 167
Query: 258 KLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
L + +G + E H+ FP R N F+E+IS ++K+RV+ERG G TLACGTGACA V
Sbjct: 168 NLASFPVKTLGAQIETHAQFPNRVNAGFMELISRQEVKLRVFERGVGETLACGTGACAAV 227
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V+ ++ G + V LPGG L I W+ + V MTGPA+ VF+G V L
Sbjct: 228 VSGIVRGLLDTTVAVHLPGGSLSITWEGAEKPVMMTGPAKAVFHGQVKL 276
>gi|390950699|ref|YP_006414458.1| diaminopimelate epimerase [Thiocystis violascens DSM 198]
gi|390427268|gb|AFL74333.1| diaminopimelate epimerase [Thiocystis violascens DSM 198]
Length = 276
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 126/285 (44%), Positives = 164/285 (57%), Gaps = 15/285 (5%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDY 136
L F K HGLGNDF++ D R + + P +L DR FGIG D ++ P + GTD+
Sbjct: 3 LRFTKMHGLGNDFVVFDAIRQRVD--LDPATIRRLADRRFGIGCDQILLVEPPRLAGTDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L+ + V T AG I + DG+V+VD
Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFVRD-QGLSDRDEIPVGTAAGAIRLYLAPDGQVRVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +P D S +L+V G + SMGNPH V V
Sbjct: 120 MGPPELTPERIPF----QADTSSPTYDLEVAGETLTIGAASMGNPHAVLLVED------V 169
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
+ +A +GP E H FP R N F++I++P+ +++RV ERGAG TLACGTGACA VV+
Sbjct: 170 ETAPVARLGPLIESHPRFPRRVNVGFMQILTPAHIRLRVHERGAGETLACGTGACAAVVS 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
L G + R V LPGG L IEW+ V+MTGPAE VF G +
Sbjct: 230 GRLRGLLDTRARVSLPGGDLMIEWRGLSQTVWMTGPAETVFQGEI 274
>gi|410584650|ref|ZP_11321752.1| diaminopimelate epimerase [Thermaerobacter subterraneus DSM 13965]
gi|410504236|gb|EKP93748.1| diaminopimelate epimerase [Thermaerobacter subterraneus DSM 13965]
Length = 294
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 132/295 (44%), Positives = 177/295 (60%), Gaps = 19/295 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEP--RITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTD 135
+ K HGLGN+++ +D P P A + DRNFGIG+DG+I +P + G
Sbjct: 8 IRLTKMHGLGNNYLFLDGLAEPVPPDDDLPALARAVSDRNFGIGSDGLILVLPPRDPGAR 67
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK--- 192
+ MRIFN+DGSE EMCGNG+RC AR + + + F V TGAG I P + DG
Sbjct: 68 FRMRIFNADGSEGEMCGNGIRCLARLVYD-RGYTRETEFVVETGAGPIRPRLHLDGHRVT 126
Query: 193 -VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVK--WNVTCVSMGNPHCVTFGTK 249
V VDMG P L+ +P + A + V E++ G + + VT +SMGNPHCV F
Sbjct: 127 GVTVDMGVPRLERGMIPMAGPAGEQAVEVPLEVEAGGERSVFTVTALSMGNPHCVVFVDD 186
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
++ ++L +GP FEHH FP R NT F +++P ++++RVWERG+G TLACGTG
Sbjct: 187 ------LEAVDLERLGPAFEHHPAFPQRVNTHFTRVLNPERVRVRVWERGSGPTLACGTG 240
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
ACAV VA L G RR TV+LPGG L++EW D HVYMTGPA + G V+ +
Sbjct: 241 ACAVAVAGALTGRTGRRVTVELPGGSLEVEWA-GDGHVYMTGPA--AYIGDVVYD 292
>gi|224824101|ref|ZP_03697209.1| Diaminopimelate epimerase [Pseudogulbenkiania ferrooxidans 2002]
gi|224603520|gb|EEG09695.1| Diaminopimelate epimerase [Pseudogulbenkiania ferrooxidans 2002]
Length = 276
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 128/287 (44%), Positives = 168/287 (58%), Gaps = 15/287 (5%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDY 136
L F K HGLGNDF+++D R + +TPE+ +L R FGIG D ++ P G + D+
Sbjct: 3 LKFSKMHGLGNDFMVIDGVRQHVD--LTPEKIKELGHRQFGIGFDQLLLVEPSGSSENDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+AE + L+ K + V T G+IVP++ DG V VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVAE-QGLSAKVAIRVETAKGVIVPQLLADGTVTVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P K ++P + + + LD G + +++ VSMGNPH V V
Sbjct: 120 MGVPRFKPVEIPFVAA----EEALTYPLDAAGRQCDISVVSMGNPHAVQVVAD------V 169
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
D +AE+GP E H FP R N F++I+S ++++RV+ERGAG TLACGTGACA VVA
Sbjct: 170 DTFPVAELGPAIELHPRFPERVNAGFMQIVSREEIRLRVYERGAGETLACGTGACAAVVA 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ G + V GG L I W V MTGPA VF G + L
Sbjct: 230 GIRRGLLDHTVKVHTRGGDLSIRWDGVGLPVLMTGPAVTVFTGEISL 276
>gi|331086087|ref|ZP_08335170.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330407010|gb|EGG86515.1| diaminopimelate epimerase [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 277
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 176/289 (60%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITP--EQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K GLGND++ V N + ++ E A ++ DR+FG+G+DG+I P D+
Sbjct: 1 MKFTKMQGLGNDYVYV---NCLKEKVESPSEMARRVSDRHFGVGSDGLILICPS-ECADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
M+++N+DGS EMCGNG+RC +++ + L + +V T G+ + ++GKV
Sbjct: 57 EMKMYNADGSRGEMCGNGIRCVGKYVYDY-GLTDQTEISVETLGGIKHLSLTVEEGKVAL 115
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
KVDMG PI +P + + V + VDG ++ +TC+SMGNPH V + + Q
Sbjct: 116 VKVDMGSPIFVPEQIPVKVEGDH---AVNVPISVDGDEYRMTCISMGNPHAVVY-LDDIQ 171
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
N++++K IGPKFEHH FP R NTEF ++ ++MRVWERG+G TLACGTGACA
Sbjct: 172 NMEIEK-----IGPKFEHHPCFPNRVNTEFACVLDRETVEMRVWERGSGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V VA+++ G + TV L GG L IEW E N VYMTGPA VVF G +
Sbjct: 227 VAVASMVNGLTKDCVTVQLLGGNLKIEWDREKNVVYMTGPATVVFDGEL 275
>gi|317057027|ref|YP_004105494.1| carbamoyl-phosphate synthase large subunit [Ruminococcus albus 7]
gi|315449296|gb|ADU22860.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus albus 7]
Length = 1351
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 146/323 (45%), Positives = 190/323 (58%), Gaps = 37/323 (11%)
Query: 57 SSIHAPESASRTSFLD----RRESGFLHFVKYHGLGNDFI-------LVDNRNSTEPRIT 105
SSI + + S T +D RRE LHF K HG GND++ ++DN
Sbjct: 1046 SSIRSKYNESNTEIVDINNMRREKTTLHFTKMHGCGNDYVYFNCFDRMIDN--------- 1096
Query: 106 PEQ-AAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 164
PE A L DR+FGIG DGVI D MR+FN DGSE +MCGNG+RC A+F+ +
Sbjct: 1097 PEGFALNLSDRHFGIGGDGVILVCRS-KVADGRMRMFNLDGSEGKMCGNGIRCVAKFMRD 1155
Query: 165 LENLNGKQSFTVHTGAGLIVPEI-QDDGKVK---VDMGEPILKASDVPTSLSANKDQSVV 220
L + T+ T +G+I ++ + G+V VDMG IL +P +L A+++ VV
Sbjct: 1156 -NGLVDRDLMTIETLSGIIKVKLSRHYGEVNGATVDMGAAILDPVKIPCTLPADENGMVV 1214
Query: 221 KSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNT 280
E+D+ G K NVTCVSMGNPHC+ F +D + + +IGPKFEH +FP R NT
Sbjct: 1215 NREVDIAGEKHNVTCVSMGNPHCIVFMNN------IDDMEIEKIGPKFEHDPIFPERVNT 1268
Query: 281 EFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHA--ERRCTVDLPGGPLDI 338
EF+++I LKMRVWERG+G T ACGTGACA VVAAVL G+ + TV L GG L I
Sbjct: 1269 EFIKVIDSHTLKMRVWERGSGETFACGTGACAAVVAAVLNGYCPKDEEVTVMLRGGNLTI 1328
Query: 339 EWKEEDNHVYMTGPAEVVFYGSV 361
+ +E VYMTG A VF G +
Sbjct: 1329 RYTDET--VYMTGEAVTVFEGDI 1349
>gi|260438092|ref|ZP_05791908.1| diaminopimelate epimerase [Butyrivibrio crossotus DSM 2876]
gi|292809572|gb|EFF68777.1| diaminopimelate epimerase [Butyrivibrio crossotus DSM 2876]
Length = 277
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/287 (43%), Positives = 173/287 (60%), Gaps = 20/287 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K GLGND++ V N E +I + A ++ DR+FGIG+DG+I P + D+
Sbjct: 1 MKFTKMEGLGNDYVYV---NCLEEQIADPSKTAIEVSDRHFGIGSDGLILIKPS-DKADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
M ++N+DGS+ +MCGNG+RC +F+ + L K TV T AG+ + + K
Sbjct: 57 FMEMYNADGSQGKMCGNGIRCVGKFVYDY-GLTDKTEITVDTLAGIKYLSLNIENKAVKS 115
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V+V+MG+P + +P + V+ E G + +TCVSMGNPHC+T+ + +
Sbjct: 116 VRVNMGKPEFTPALIPVKADGD---VVIDKEFIFGGNAYRITCVSMGNPHCITY-MDDIK 171
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
NL+++K IGP FE+ S+FP R NTEFVE+I L MRVWERG+G TLACGTGACA
Sbjct: 172 NLEIEK-----IGPVFENDSIFPDRVNTEFVEVIDRDTLSMRVWERGSGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
V VA++L G TV L GG L I W E + VYM GPA +VF G
Sbjct: 227 VAVASILNGLCNDSVTVKLLGGDLKITWDREADVVYMEGPANIVFTG 273
>gi|72382162|ref|YP_291517.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL2A]
gi|123621276|sp|Q46L14.1|DAPF_PROMT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|72002012|gb|AAZ57814.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL2A]
Length = 284
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 159/286 (55%), Gaps = 11/286 (3%)
Query: 80 HFVKYHGLGNDFILVDNRNSTEPRITPEQA----AKLCDRNFGIGADGVIFAMPGVNGTD 135
+F KY GLGNDFI+ D R++ + + LC+RNFGIGADG+I + N
Sbjct: 4 NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCF 63
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
M+I+NSDGSEPEMCGNG+RC F+ + +N + T AGLI+ I + +KV
Sbjct: 64 VRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIETKAGLILTYIDGNENIKV 123
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
+MGEPIL D+PT L N V + + NV SMGNPH + F
Sbjct: 124 NMGEPILSPLDIPTKLLMNS-LKVPNGVITLKDQILNVYAASMGNPHMIVFVN------D 176
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
++ + E G E H+ FP TN FVEII S +K++VWERG G TLACGTGACA +V
Sbjct: 177 IEGIPFQEWGSFLEKHNTFPNDTNVHFVEIIDKSNIKVKVWERGCGPTLACGTGACACLV 236
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
G V LPGG L++EW + V+M GPA VF G +
Sbjct: 237 VTSKLGKTLNNANVYLPGGKLEVEWPNQSGPVFMQGPALKVFSGEI 282
>gi|197116758|ref|YP_002137185.1| diaminopimelate epimerase [Geobacter bemidjiensis Bem]
gi|197086118|gb|ACH37389.1| diaminopimelate epimerase [Geobacter bemidjiensis Bem]
Length = 278
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/292 (44%), Positives = 173/292 (59%), Gaps = 21/292 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAA--KLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K G GND++ V N E + A K+ +RNFGIG+DG+I MP D
Sbjct: 1 MKFTKMQGAGNDYVYV---NCFEEAVHDPAAVAIKVSNRNFGIGSDGLILIMPS-EVADV 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----- 191
MR+FNSDGSE EMCGNG+RC A++ A + K T TGAG++ ++ D
Sbjct: 57 RMRMFNSDGSESEMCGNGIRCVAKY-AYDHGIVTKNEITAETGAGILTLQLFTDAGCKVE 115
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
KV+V+MG P L ++P + ++ VV L+V +N+TC SMGNPHCV F
Sbjct: 116 KVRVNMGPPRLTRKEIP--MLGEPEERVVNVPLNVLHSSFNITCASMGNPHCVIFVDD-- 171
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
VD + + GP E+H +FP RTN EFV+I+S ++++ R WERGAG TLACGTG+
Sbjct: 172 ----VDTFQVEKYGPLIENHELFPRRTNVEFVQIVSRTEVRQRTWERGAGETLACGTGSS 227
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
AV A VL G E+R L GG L++EW ED ++YMTGPA VF G + L
Sbjct: 228 AVTAACVLNGLTEKRILNHLTGGDLEMEWG-EDGNIYMTGPAVEVFTGEIDL 278
>gi|114319225|ref|YP_740908.1| diaminopimelate epimerase [Alkalilimnicola ehrlichii MLHE-1]
gi|122312761|sp|Q0ACL9.1|DAPF_ALHEH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|114225619|gb|ABI55418.1| diaminopimelate epimerase [Alkalilimnicola ehrlichii MLHE-1]
Length = 279
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 126/292 (43%), Positives = 170/292 (58%), Gaps = 21/292 (7%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNG-TDY 136
+ F K GLGNDF+++D R EP +PEQ + DR +G+G D V+ A P D+
Sbjct: 3 VRFTKMQGLGNDFVVIDAVRQPVEP--SPEQIRHIADRRYGVGCDQVLLATPARRSQADF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENL-NGKQSFTVHTGAGLIVPEIQDDGKVKV 195
IFN DGS+ E CGNGVRC ARF+ + + G+ + T GL + DDG V V
Sbjct: 61 GYLIFNPDGSQAEHCGNGVRCLARFLDDRGLVPAGRHELVIETINGLSRVRLCDDGPVTV 120
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
DMG P+L+ +P + + EL+V+G + VSMGNPH V L+
Sbjct: 121 DMGAPVLEPPHIPFRAPSRAREY----ELEVEGQVVRLGAVSMGNPHAV---------LR 167
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD ++ A + GP E HS FP R N F+++++P+ +++RV+ERGAG TLACGTGACA
Sbjct: 168 VDDVDSAPVETLGPAIESHSRFPRRVNVGFMQVLTPTHIRLRVYERGAGETLACGTGACA 227
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VV+ L G E VDLPGG L I W + HV+MTGPAE VF G + L+
Sbjct: 228 AVVSGRLRGWLEEAVDVDLPGGRLVIHWAGDGEHVWMTGPAETVFEGEIRLD 279
>gi|317121747|ref|YP_004101750.1| diaminopimelate epimerase [Thermaerobacter marianensis DSM 12885]
gi|315591727|gb|ADU51023.1| diaminopimelate epimerase [Thermaerobacter marianensis DSM 12885]
Length = 301
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/287 (46%), Positives = 178/287 (62%), Gaps = 17/287 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEP--RITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTD 135
L K HGLGN+++ +D + P + P A + DRNFGIG+DG+I +P G
Sbjct: 15 LRLTKMHGLGNNYLFLDGLSGPVPPDQELPALARAVSDRNFGIGSDGLILVLPPREAGAQ 74
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV- 193
+ MRIFN+DGSE EMCGNG+RC AR + + + FTV TGAG I P + ++G+V
Sbjct: 75 FRMRIFNADGSEGEMCGNGIRCLARLVYD-RGYTRAEEFTVETGAGPIRPRLHLENGEVV 133
Query: 194 --KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVK--WNVTCVSMGNPHCVTFGTK 249
VDMG P L+ +P + A + V E++ G + + VT +SMGNPHCV
Sbjct: 134 AVTVDMGVPRLERGAIPMAGPAGERAVEVPLEVEAAGERRTFTVTALSMGNPHCVV---- 189
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
V ++LA +GP FEHH FP R NT F +++SP ++++RVWERG+G TLACGTG
Sbjct: 190 --FVDDVAAVDLARLGPAFEHHPAFPQRVNTHFTQVLSPQRVRVRVWERGSGPTLACGTG 247
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVV 356
ACAV VA + G RR TV+LPGG LDI W +ED HVYMTGPA +
Sbjct: 248 ACAVAVAGAVTGRTGRRVTVELPGGALDIRW-DEDGHVYMTGPAAYI 293
>gi|159903417|ref|YP_001550761.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9211]
gi|159888593|gb|ABX08807.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9211]
Length = 284
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/287 (42%), Positives = 168/287 (58%), Gaps = 12/287 (4%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPR--ITPEQ--AAKLCDRNFGIGADGVIFAMPGVNG 133
+ F KYHGLGNDFI++D R S P ++ E+ LC R++GIG DG+I +P V G
Sbjct: 3 LIGFKKYHGLGNDFIIIDGRFSLLPSSIVSAEKHLVISLCKRHYGIGCDGIILILPPVAG 62
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKV 193
D+ M+IFNSDGSEPEMCGNG+RC R+I + + SF V T AG I I++ G +
Sbjct: 63 GDFRMKIFNSDGSEPEMCGNGIRCLIRYILDDSEDDFVDSFIVETLAGKIQINIEE-GNI 121
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
KVDMG PI +PT+L N ++ + + + + + V+ SMGNPH + +
Sbjct: 122 KVDMGSPIFAPEKIPTTLPIN-ERGIPQGRITILDQDFLVSACSMGNPHAII------EV 174
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ + L E G K E H VFP TN FV++ S S++++ +WERG G TLACGTGACA
Sbjct: 175 PTIKNIPLYEWGQKLETHPVFPKYTNVHFVQVKSRSEIEILIWERGCGPTLACGTGACAC 234
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
+ G V LPGG L+I W + ++M G A+ V+ GS
Sbjct: 235 LAVLAKLGKCNDLILVKLPGGELEINWPKMKGSIFMIGDAKYVYSGS 281
>gi|120553432|ref|YP_957783.1| diaminopimelate epimerase [Marinobacter aquaeolei VT8]
gi|120323281|gb|ABM17596.1| diaminopimelate epimerase [Marinobacter aquaeolei VT8]
Length = 308
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/297 (44%), Positives = 174/297 (58%), Gaps = 22/297 (7%)
Query: 73 RRESG-FLHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGVIFAMP- 129
RR G L F K HGLGNDF++VD ++P R+ P+ +L DRNFGIG D ++ P
Sbjct: 5 RRGQGPVLRFTKMHGLGNDFMVVDA--ISQPFRLAPDTIRELADRNFGIGFDQLLVVEPP 62
Query: 130 GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQD 189
G+ D+ RIFN+DGSE E CGNG RCFARF+ + + L K+ V T G+I ++
Sbjct: 63 GLPDVDFRYRIFNADGSEVEQCGNGARCFARFVRD-QRLTNKRVIRVQTAKGVIELKVGR 121
Query: 190 DGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTK 249
DG V V+MG P L +P + KD V DV+G ++ +SMGNPH V
Sbjct: 122 DGLVAVNMGVPELNPPAIPFAADQRKDVYTV----DVNGQTVELSAISMGNPHGV----- 172
Query: 250 EGQNLKVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLAC 306
L VD ++ A + GP+ E H FPAR N F+++I ++RV+ERG+G TLAC
Sbjct: 173 ----LVVDNVDTAPVESLGPQLEKHPRFPARANIGFLQVIDRRHARLRVFERGSGETLAC 228
Query: 307 GTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
G+GACA VVA L G + R V+L GG L IEW+ ED V M GPA VF G + L
Sbjct: 229 GSGACAAVVAGCLRGLLDSRVEVELRGGRLVIEWQGEDTPVMMEGPATTVFEGQLRL 285
>gi|124025702|ref|YP_001014818.1| diaminopimelate epimerase [Prochlorococcus marinus str. NATL1A]
gi|166225742|sp|A2C243.1|DAPF_PROM1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|123960770|gb|ABM75553.1| Diaminopimelate epimerase [Prochlorococcus marinus str. NATL1A]
Length = 284
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 159/286 (55%), Gaps = 11/286 (3%)
Query: 80 HFVKYHGLGNDFILVDNRNSTEPRITPEQA----AKLCDRNFGIGADGVIFAMPGVNGTD 135
+F KY GLGNDFI+ D R++ + + LC+RNFGIGADG+I + N
Sbjct: 4 NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCF 63
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
M+I+NSDGSEPEMCGNG+RC F+ + +N + T AGLI+ I + +KV
Sbjct: 64 VRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIETKAGLILTSIDCNENIKV 123
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
+MGEPIL D+PT L N V + + NV SMGNPH + F
Sbjct: 124 NMGEPILSPLDIPTKLLMNS-LKVPNGVITLKDQILNVYAASMGNPHMIVFVN------D 176
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
++ + E G E H+ FP TN FVEII S +K++VWERG G TLACGTGACA +V
Sbjct: 177 IEGIPFQEWGSFLEKHNTFPNDTNVHFVEIIDKSNIKVKVWERGCGPTLACGTGACACLV 236
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
G V LPGG L++EW + V+M GPA VF G +
Sbjct: 237 VTSKLGKTLNNANVYLPGGKLEVEWPNQSGPVFMQGPALKVFSGEI 282
>gi|398344047|ref|ZP_10528750.1| diaminopimelate epimerase [Leptospira inadai serovar Lyme str. 10]
Length = 282
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/289 (44%), Positives = 171/289 (59%), Gaps = 18/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K G+GND+I +D E + P+Q KL DRNFGIG DGVIF NG D+ M
Sbjct: 4 VQFTKMEGIGNDYIYID-ATKNELILNPQQIQKLSDRNFGIGGDGVIFIRSSSNG-DFRM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ--DDGKVK-- 194
++N+DGS EMCGNG+RC A+++ + E L K++ + TGAGL+ ++ + KV+
Sbjct: 62 DMYNADGSSSEMCGNGIRCVAKYVYDHE-LTKKKNPVIETGAGLLEVDLTVGQNNKVELV 120
Query: 195 -VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG+PIL + +P + +V+ LD+ G T VSMGNPHCV F
Sbjct: 121 SVDMGKPILVPAQIPVKWK--NESPIVEQNLDIAGQNLKFTAVSMGNPHCVIFVDDP--- 175
Query: 254 LKVDKLNLAEIGPKFEHHS-VFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
D + EIGP E+ + +FP R N EFV + L R WERGAG TLACGTGACA
Sbjct: 176 ---DTFPVREIGPLIENKTELFPKRVNVEFVSLRGKDHLYQRTWERGAGETLACGTGACA 232
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V+ A+ L G + +DL GG L I+W E HV MTGPA+ VF G++
Sbjct: 233 VMTASHLSGKTGKDVRIDLRGGSLRIQWLET-GHVLMTGPAKEVFTGTI 280
>gi|317473618|ref|ZP_07932907.1| diaminopimelate epimerase [Anaerostipes sp. 3_2_56FAA]
gi|316898908|gb|EFV20933.1| diaminopimelate epimerase [Anaerostipes sp. 3_2_56FAA]
Length = 278
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/291 (42%), Positives = 178/291 (61%), Gaps = 19/291 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAAKLC-DRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG GND++ V N E I P + AK DR+FGIG+DG+I P + D+
Sbjct: 1 MKFTKMHGCGNDYVYV---NCFEETIENPNETAKFVSDRHFGIGSDGMICIHPS-DKADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
M ++NSDG+E MCGNGVRC A+++ + L K + T+ T G+ ++ +DGKV
Sbjct: 57 RMAMYNSDGTEGAMCGNGVRCIAKYVYDY-GLTDKTTITIETKGGIKELDLTVEDGKVTW 115
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
VDM P+L+A +P + ++++ V+ + VDG ++ +TCVSMGNPH V F
Sbjct: 116 VNVDMEAPVLEADKIP--VIYDEEKKVIDKPVIVDGREYRITCVSMGNPHGVVFVDS--- 170
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD L++ ++GP FEHH +FP R NTEF++++ ++MRVWERGAG TLACGTGACA
Sbjct: 171 ---VDDLDIEKLGPMFEHHPMFPDRVNTEFIQVVDDHTIRMRVWERGAGETLACGTGACA 227
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A+ L + V L GG L IE+ EE + ++M GPA VF G + L
Sbjct: 228 SAYASYLNQKTGNKVLVHLLGGDLQIEYDEEKHTIFMKGPATKVFDGEIDL 278
>gi|398331984|ref|ZP_10516689.1| diaminopimelate epimerase [Leptospira alexanderi serovar Manhao 3
str. L 60]
Length = 303
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/288 (42%), Positives = 169/288 (58%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G+GND++ +D+ + + R+TPEQ K+ +RNFGIG+DGVIF G D+ M
Sbjct: 26 LKFTKMEGIGNDYVYIDSTQA-DIRLTPEQIQKISNRNFGIGSDGVIFIRNSKQG-DFMM 83
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK-----V 193
++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++ V
Sbjct: 84 DMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTNSKNPKIETGAGVLEVDLKIGSGNKVDFV 142
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG+PIL S +P ++ ++ +V ++ G T VSMGNPHCV F
Sbjct: 143 SVDMGKPILVPSKIP--INWKDEEVIVDQTFEIAGKNLKFTAVSMGNPHCVIFVDD---- 196
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+ ++ IGP E H +FP R N EFV + R WERGAG TLACGTGACAV
Sbjct: 197 --CDQFPVSGIGPLIERHPIFPKRVNVEFVTVRGKDHFYQRTWERGAGETLACGTGACAV 254
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA L G + + +DL GG L I+W +E V MTGPA +F G +
Sbjct: 255 TVAGNLTGRSGKEVKIDLRGGTLRIQW-QESGSVLMTGPAREIFSGEI 301
>gi|358062820|ref|ZP_09149457.1| diaminopimelate epimerase [Clostridium hathewayi WAL-18680]
gi|356698954|gb|EHI60477.1| diaminopimelate epimerase [Clostridium hathewayi WAL-18680]
Length = 266
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 175/289 (60%), Gaps = 31/289 (10%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT-PEQAAK-LCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG+GND++ V N E ++ PE+ ++ + DR+FGIG+DG+I P D
Sbjct: 1 MKFTKMHGIGNDYVYV---NCFEETVSCPEEVSRRISDRHFGIGSDGLILIKPS-EVADC 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
M++FN+DGSE MCGN +RC +++ E + K S +V T +GL E+ G
Sbjct: 57 RMQMFNADGSEGAMCGNAIRCVGKYVYE-HGIVKKTSISVETKSGLRFLELDVKGSEVVS 115
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V VDMGEP L S +P ++ VDGV + +SMGNPH V F +
Sbjct: 116 VTVDMGEPEL-TSKLPEPIT-------------VDGVDYEFVGISMGNPHAVYFMEE--- 158
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
+D L+L +IGP FEHH+ FP RTNTEF++++ S ++MRVWERG+G T ACGTGA A
Sbjct: 159 ---IDGLDLEKIGPAFEHHARFPERTNTEFIQLVDRSHIRMRVWERGSGETWACGTGASA 215
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V A++L G+ +R V L GG L I W EE NH++MTGPA VF+G +
Sbjct: 216 SVTASILMGYTDREVEVFLRGGKLVIRWDEESNHIFMTGPAVEVFHGEI 264
>gi|421106599|ref|ZP_15567163.1| diaminopimelate epimerase [Leptospira kirschneri str. H2]
gi|410008065|gb|EKO61740.1| diaminopimelate epimerase [Leptospira kirschneri str. H2]
Length = 281
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/288 (42%), Positives = 171/288 (59%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G+GND++ +D+ T+ R+TPEQ K+ DRNFGIG+DGVIF G D+ M
Sbjct: 4 LKFTKMEGIGNDYVYIDS-TQTDIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFMM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK-----V 193
++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++ V
Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTSSKNPKIETGAGILEVDLKVGSGNKVDLV 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG+P+L S +P + +++++ L + T VSMGNPHCV F
Sbjct: 121 SVDMGKPVLVPSQIP--VVWKNEETIIDQPLQIGDKNLKFTAVSMGNPHCVIFVDDS--- 175
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+ + IGP E + +FP R N EFV + + L R WERGAG TLACGTGACAV
Sbjct: 176 ---DEFPVRGIGPLIERNFIFPKRVNVEFVTVRGKNHLYQRTWERGAGETLACGTGACAV 232
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+VA L G + + +DL GG L I+W+E N + MTGPA +F G +
Sbjct: 233 MVAGSLTGRSGKDVQIDLKGGTLRIQWQESGN-ILMTGPACEIFSGEI 279
>gi|422608386|ref|ZP_16680369.1| diaminopimelate epimerase [Pseudomonas syringae pv. mori str.
301020]
gi|330892011|gb|EGH24672.1| diaminopimelate epimerase [Pseudomonas syringae pv. mori str.
301020]
Length = 276
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/290 (43%), Positives = 167/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + D + GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDPHTGIGFDQLLLVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKSGIIELDIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P VP + + + ++VDG + VSMGNPH V L+V
Sbjct: 120 MGPPRF----VPEEIPFEAAEQATRYNVEVDGQNIELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A E+GPK EHH FPAR N F+ ++ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINNAPVHELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAG 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276
>gi|345864914|ref|ZP_08817109.1| diaminopimelate epimerase [endosymbiont of Tevnia jerichonana (vent
Tica)]
gi|345123994|gb|EGW53879.1| diaminopimelate epimerase [endosymbiont of Tevnia jerichonana (vent
Tica)]
Length = 269
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 124/280 (44%), Positives = 168/280 (60%), Gaps = 13/280 (4%)
Query: 85 HGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNS 143
G+GNDF++ D N + ++ Q + DR FG+G D ++ P + TD+ RIFN+
Sbjct: 2 QGIGNDFVVFDAINQSV-ELSATQYRAIADRRFGVGCDQILLVESPRLPDTDFHYRIFNA 60
Query: 144 DGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILK 203
DGSE E CGNG RCFARF+ E + L+ K+S V T +G IV + DDG V+VDMGEPIL
Sbjct: 61 DGSEVEQCGNGARCFARFVHE-KGLSSKRSIPVGTTSGRIVLNLLDDGLVQVDMGEPILD 119
Query: 204 ASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAE 263
PT++ D L V G + + VSMGNPH V VD +
Sbjct: 120 ----PTAIPFQADTIATSYPLQVGGEQLMIGAVSMGNPHAVLLVDS------VDSFPVER 169
Query: 264 IGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHA 323
+GP E+H FP R N F+++I +Q+++RV+ERG+G TLACGTGACA VVA L+G
Sbjct: 170 LGPLIENHPRFPQRVNVGFMQVIDRNQIQLRVFERGSGETLACGTGACAAVVAGRLQGLL 229
Query: 324 ERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
++R V+LPGG L +EW E+ V M+GPA VF G + L
Sbjct: 230 DQRVQVNLPGGNLVVEWPGEEYPVLMSGPAVTVFEGKIEL 269
>gi|149376982|ref|ZP_01894736.1| diaminopimelate epimerase [Marinobacter algicola DG893]
gi|149358759|gb|EDM47229.1| diaminopimelate epimerase [Marinobacter algicola DG893]
Length = 327
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 131/294 (44%), Positives = 174/294 (59%), Gaps = 16/294 (5%)
Query: 73 RRESG-FLHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGVIFAMP- 129
RR G L+F K HGLGNDF++VD ++P R+ PE +L DRNFGIG D ++ P
Sbjct: 11 RRSQGPMLNFTKMHGLGNDFMVVDA--ISQPFRLRPEMIRELADRNFGIGFDQLLVVEPP 68
Query: 130 GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQD 189
G+ D+ RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I +
Sbjct: 69 GLPDVDFRYRIFNSDGSEVEQCGNGARCFARFVRD-QRLTNKKVIRVQTAKGVIELRVGR 127
Query: 190 DGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTK 249
G V VDMG P L +P +A++ + V EL D V+ ++ VSMGNPH V
Sbjct: 128 AGMVTVDMGVPELNPPAIP--FAADRRKDVYTVELGGDTVE--LSAVSMGNPHGVLLVDD 183
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
VD + E GP+ E+H FPAR N F++I+ + +++RV+ERG+G T+ACG+G
Sbjct: 184 ------VDTAPVGEYGPRLENHPRFPARANIGFLQIVDRTHVRLRVFERGSGETMACGSG 237
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
ACA VVA L G + R V+L GG L IEW+ E V M GP VF G + L
Sbjct: 238 ACAAVVAGCLRGLLDNRVDVELKGGRLVIEWQGEGAPVMMEGPTASVFEGQLRL 291
>gi|56477674|ref|YP_159263.1| diaminopimelate epimerase [Aromatoleum aromaticum EbN1]
gi|81598729|sp|Q5P2V2.1|DAPF_AZOSE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|56313717|emb|CAI08362.1| Diaminopimelate epimerase [Aromatoleum aromaticum EbN1]
Length = 277
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 124/285 (43%), Positives = 162/285 (56%), Gaps = 15/285 (5%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D R S + +TPEQ +L DR+FGIG D ++ D+
Sbjct: 3 LRFTKMHGLGNDFVVIDAIRQSVD--LTPEQVRRLADRHFGIGCDQLLVVEEATRPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E E CGNG RCF RF+ E + L K+ V T +G+I P+++DDG V VD
Sbjct: 61 RYRIFNADGGEVEQCGNGARCFVRFVHE-QGLTAKRRIRVETRSGIIAPQLEDDGLVTVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P+L+ + VP D + LDV G +T VSMGNPH V
Sbjct: 120 MGVPVLEPARVPFV----SDSDAIVQPLDVGGETVAITAVSMGNPHAVQVVADVDAAPVA 175
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
+ G E H FPAR N FV+++ ++++RV+ERGAG TLACGTGACA VV
Sbjct: 176 AQ------GALIERHPRFPARVNAGFVQVVDAHRIRLRVFERGAGETLACGTGACAAVVT 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+L A+ V+ GG LDI W+ V MTGPA VF G +
Sbjct: 230 VILRELAQSPVRVETRGGELDIAWEGPGQPVLMTGPAVTVFAGEI 274
>gi|291547161|emb|CBL20269.1| diaminopimelate epimerase [Ruminococcus sp. SR1/5]
Length = 284
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 126/292 (43%), Positives = 180/292 (61%), Gaps = 20/292 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLC-DRNFGIGADGVIFAMPGVNGTDYT 137
+ F K HG+GND++ V+ T P AK DR+FGIG+DG+I P D
Sbjct: 1 MKFTKMHGIGNDYVYVNCFEETVK--DPAAVAKFVSDRHFGIGSDGLILIRPS-EIADCE 57
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGK---V 193
M ++N DGS+ MCGNG+RC A+++ + + K S ++ T +G+ ++ DGK V
Sbjct: 58 MDMYNLDGSQGAMCGNGIRCVAKYVYD-HGIVDKTSLSIATRSGIKYVDLTIRDGKASMV 116
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
KV+MG PIL A ++P + + V+ + + VDG ++++T VSMGNPH + +
Sbjct: 117 KVNMGSPILTAKEIPV---VAETEQVIDAPITVDGKEYHMTAVSMGNPHAIIYVDD---- 169
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V+ L+L +IGP FE+H FP R NTEFV++I +KMRVWERG+G TLACGTGACAV
Sbjct: 170 --VNSLDLEKIGPSFENHVCFPDRVNTEFVQVIDRHTVKMRVWERGSGETLACGTGACAV 227
Query: 314 VVAAVLEGHAE--RRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA++L + + TV L GG L+I W+ ++N VYMTGPA VF G + L
Sbjct: 228 TVASILNDKVDGSKPVTVQLLGGDLNISWERDENLVYMTGPATTVFDGEIDL 279
>gi|320101594|ref|YP_004177185.1| diaminopimelate epimerase [Isosphaera pallida ATCC 43644]
gi|319748876|gb|ADV60636.1| diaminopimelate epimerase [Isosphaera pallida ATCC 43644]
Length = 293
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 165/290 (56%), Gaps = 15/290 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGT--DY 136
L FVK HG+GND+I + + P A ++ DR+FG+G DG+I +P G+ D
Sbjct: 3 LRFVKMHGIGNDYIYISGFDQPIPDDPSALAVRIADRHFGVGGDGLILVLPPEPGSEADA 62
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----- 191
MR+FN+DGSE MCGNG+RC A+F+ + + + GAG++ +++ D
Sbjct: 63 VMRMFNADGSEGGMCGNGIRCVAKFLYDSGYVRAPRIRVKTKGAGVLSLDLEIDPASDRV 122
Query: 192 -KVKVDMGEPILKASDVPTSLSANKDQSV-VKSELDVDGVKWNVTCVSMGNPHCVTFGTK 249
+V+V+MG PIL+AS +PT+L + + D + + T VSMGNPH V F
Sbjct: 123 RRVRVEMGAPILRASAIPTTLPGDPPLDYPIAVTYDGKTITYRGTAVSMGNPHLVMFVED 182
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
V ++L IGP E H FP R N ++ +P +MR WERG+G TLACGTG
Sbjct: 183 ------VASIDLERIGPLLERHEAFPDRVNVHVAQVDAPDVARMRTWERGSGITLACGTG 236
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
ACAV+VA VL G R + LPGG LD+EW + V MTGPA VF G
Sbjct: 237 ACAVLVAGVLTGRTARAARIHLPGGALDLEWPRDGETVIMTGPAVTVFEG 286
>gi|260587431|ref|ZP_05853344.1| diaminopimelate epimerase [Blautia hansenii DSM 20583]
gi|260542298|gb|EEX22867.1| diaminopimelate epimerase [Blautia hansenii DSM 20583]
Length = 277
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 170/289 (58%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K G+GND++ V N + I E + ++ DR+FGIG+DG+I + D+
Sbjct: 1 MKFTKMQGIGNDYVYV---NCFQEHIENPSEVSRRISDRHFGIGSDGLIL-IKSSEKADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
M ++N+DGS+ MCGNG+RC +++ + L K +V T +G+ ++ + K
Sbjct: 57 EMEMYNADGSQGAMCGNGMRCVGKYVYDY-GLTDKTRISVDTKSGIKYLDLTVENKKVKQ 115
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V+V+MGEP+L+ +P K V+ +V + +T VSMGNPH V +
Sbjct: 116 VRVNMGEPVLETKAIPMIYDGEK---VISQPFNVGQDIYEITAVSMGNPHAVVYVDN--- 169
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V L L EIGPKFE H+ FP NTEFV +I ++MRVWERG+G TLACGTGACA
Sbjct: 170 ---VKSLPLEEIGPKFEKHTAFPESVNTEFVRVIDRRTVEMRVWERGSGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V VA+VL G+ E TV L GG L I W +N VYMTGPAEVVF G +
Sbjct: 227 VAVASVLNGYTEDEVTVRLLGGDLKIFWDRAENFVYMTGPAEVVFEGEI 275
>gi|331083711|ref|ZP_08332822.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA]
gi|330403922|gb|EGG83474.1| diaminopimelate epimerase [Lachnospiraceae bacterium 6_1_63FAA]
Length = 277
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 170/289 (58%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K G+GND++ V N + I E + ++ DR+FGIG+DG+I + D+
Sbjct: 1 MKFTKMQGIGNDYVYV---NCFQEHIENPSEVSRRISDRHFGIGSDGLIL-IKSSEKADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
M ++N+DGS+ MCGNG+RC +++ + L K +V T +G+ ++ + K
Sbjct: 57 EMEMYNADGSQGAMCGNGMRCVGKYVYDY-GLTDKTRISVDTKSGIKYLDLTVENKKVKQ 115
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V+V+MGEP+L+ +P K V+ +V + +T VSMGNPH V +
Sbjct: 116 VRVNMGEPVLETKAIPMIYEGEK---VISQPFNVGQDIYEITAVSMGNPHAVVYVDN--- 169
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V L L EIGPKFE H+ FP NTEFV +I ++MRVWERG+G TLACGTGACA
Sbjct: 170 ---VKNLPLEEIGPKFEKHTAFPESVNTEFVRVIDRRTVEMRVWERGSGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V VA+VL G+ E TV L GG L I W +N VYMTGPAEVVF G +
Sbjct: 227 VAVASVLNGYTEDEVTVRLLGGDLKIFWDRAENFVYMTGPAEVVFEGEI 275
>gi|456983881|gb|EMG20073.1| diaminopimelate epimerase [Leptospira interrogans serovar
Copenhageni str. LT2050]
Length = 273
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 123/283 (43%), Positives = 169/283 (59%), Gaps = 19/283 (6%)
Query: 85 HGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNS 143
G+GND++ +D+ RN R+TPEQ K+ DRNFGIG+DGVIF G D+ M ++NS
Sbjct: 2 EGIGNDYVYIDSTRNDI--RLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFMMDMYNS 58
Query: 144 DGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK-----VKVDMG 198
DGS EMCGNG+RC A++I + L ++ + TGAG++ +++ V VDMG
Sbjct: 59 DGSSSEMCGNGIRCVAKYIYD-HGLTSSKNPKIETGAGILEVDLKIGSGNKVDLVSVDMG 117
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
+P+L S +P + +++++ L++ T VSMGNPHCV F D+
Sbjct: 118 KPVLVPSQIP--VVWKNEETIIDQPLEIGDKNLKFTAVSMGNPHCVIFVDDS------DE 169
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
+ IGP E HS+FP R N EFV I L R WERGAG TLACGTGACAV+VA
Sbjct: 170 FPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACAVMVAGN 229
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
L G + + +DL GG L I+W+E N + MTGPA +F G +
Sbjct: 230 LTGRSGKDVQIDLRGGTLRIQWQESGN-ILMTGPAREIFSGEI 271
>gi|359785715|ref|ZP_09288862.1| diaminopimelate epimerase [Halomonas sp. GFAJ-1]
gi|359296948|gb|EHK61189.1| diaminopimelate epimerase [Halomonas sp. GFAJ-1]
Length = 277
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 124/287 (43%), Positives = 168/287 (58%), Gaps = 13/287 (4%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
LHF K HGLGNDF++VD + R+ EQ +L DR FGIG D ++ P + D+
Sbjct: 2 LLHFTKMHGLGNDFMVVD-LVTQRARLLDEQIRQLADRRFGIGFDQLLIVEPPRDPEMDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RI+N+DGSE E CGNG RCFARF+ + + L K V T G +V +Q DG V+VD
Sbjct: 61 RYRIYNADGSEVENCGNGARCFARFVRD-QRLTHKHEIHVETAGGPLVLNVQHDGMVRVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P + +P A DQ + E+ V+G + VSMGNPH V Q V
Sbjct: 120 MGRPRFNPATLP--FEAPGDQPL--HEVAVEGETLQLGVVSMGNPHAVL------QVESV 169
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
D + +GP E H FP R N F+++++P+++++RV+ERG+G TLACGTGACA V +
Sbjct: 170 DSAPVERLGPLLESHPRFPKRVNVGFMQVVAPNEIRLRVFERGSGETLACGTGACAAVAS 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G + TV LPGG L IEW + + + M GPA VF G V L
Sbjct: 230 GIRQGLLKSPVTVHLPGGQLSIEWPDPEASLVMVGPATRVFDGRVAL 276
>gi|253698989|ref|YP_003020178.1| diaminopimelate epimerase [Geobacter sp. M21]
gi|251773839|gb|ACT16420.1| diaminopimelate epimerase [Geobacter sp. M21]
Length = 278
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 128/292 (43%), Positives = 172/292 (58%), Gaps = 21/292 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAA--KLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K G GND++ V N E + A K+ +RNFGIG+DG+I MP D
Sbjct: 1 MKFTKMQGAGNDYVYV---NCFEEAVHDPAAVAIKVSNRNFGIGSDGLILIMPS-EVADV 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----- 191
MR+FNSDGSE EMCGNG+RC A++ A + K T TGAG++ ++
Sbjct: 57 RMRMFNSDGSESEMCGNGIRCVAKY-AYDHGIVSKNEITAETGAGILTLQLFTGAGGKVE 115
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
KV+V+MG P L ++P + ++ VV L+V +N+TC SMGNPHCV F
Sbjct: 116 KVRVNMGPPRLTRKEIP--MLGEPEERVVNVPLNVLHSSFNITCASMGNPHCVIFVDD-- 171
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
VD + + GP E+H +FP RTN EFV+I+S ++++ R WERGAG TLACGTG+
Sbjct: 172 ----VDSFQVEKYGPLIENHELFPRRTNVEFVQIVSRTEVRQRTWERGAGETLACGTGSS 227
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
AV A VL G E+R L GG L++EW ED ++YMTGPA VF G + L
Sbjct: 228 AVTAACVLNGLTEKRILNHLTGGDLEMEWG-EDGNIYMTGPAVEVFSGEIGL 278
>gi|290968138|ref|ZP_06559683.1| diaminopimelate epimerase [Megasphaera genomosp. type_1 str. 28L]
gi|290781813|gb|EFD94396.1| diaminopimelate epimerase [Megasphaera genomosp. type_1 str. 28L]
Length = 279
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 120/287 (41%), Positives = 179/287 (62%), Gaps = 17/287 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ FVK HGLGNDF+ ++++ + + A K+C R+ GIGADG+I +P D M
Sbjct: 1 MKFVKMHGLGNDFVFIEDKEGKNKDFS-QLAVKMCKRHTGIGADGLIVIVPS-EKADVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDDGKVK-- 194
RI N+DGSE EMCGNG+RCFA+++ + ++ K FTV T AG++ P++ +DGKV+
Sbjct: 59 RIINADGSEAEMCGNGIRCFAKYVYD-HHIMAKDEFTVETLAGIMKPKVLTGEDGKVQLV 117
Query: 195 -VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
++MG+P + +P + + +V+ L VDG ++ +T + MG PH + + K+
Sbjct: 118 TINMGKPFPERRKIPMNGPSG---TVINEPLTVDGKEYRITSLLMGVPHTMIY-VKD--- 170
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V++++L +GPKFE H FP +TN FV+ I +K+ WERGAGATLACGTG+CA
Sbjct: 171 --VEQVDLPVLGPKFETHPAFPKKTNMNFVQCIDSHTIKVHTWERGAGATLACGTGSCAC 228
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
V + L G R+ V L G L I+++E D +VYMTGPA V + G
Sbjct: 229 AVGSFLNGFTGRQVDVQLYLGTLHIDYRETDGNVYMTGPAAVSYTGE 275
>gi|358635601|dbj|BAL22898.1| diaminopimelate epimerase [Azoarcus sp. KH32C]
Length = 277
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 126/287 (43%), Positives = 163/287 (56%), Gaps = 15/287 (5%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D R S E +TPE+ L DR+FG+G D ++ P G D+
Sbjct: 3 LRFAKMHGLGNDFVVIDAVRQSVE--LTPERVRFLADRHFGVGCDQLLVVEPASQLGVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E E CGNG RCF RF+ E + L K+ V T +G+I P++++ G V VD
Sbjct: 61 RYRIFNADGGEVEQCGNGARCFVRFVHE-QGLTEKREIRVETKSGVIAPKLEESGLVTVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P+ + + VP D V LDV G +T VSMGNPH V V
Sbjct: 120 MGVPVFEPARVPFV----SDSDAVVQPLDVAGETVAITAVSMGNPHAVQVVAD------V 169
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
D +A GP E+H+ FPAR N F++++ +++RV+ERGAG TLACGTGACA VVA
Sbjct: 170 DSAPVASQGPLIENHARFPARVNAGFMQVVDEHNIRLRVYERGAGETLACGTGACAAVVA 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ V GG LDI W V MTGPA VF G + L
Sbjct: 230 GISRELLASPVRVQTRGGELDIAWGGPGQPVMMTGPAVTVFAGEIEL 276
>gi|295109167|emb|CBL23120.1| diaminopimelate epimerase [Ruminococcus obeum A2-162]
Length = 285
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 132/292 (45%), Positives = 181/292 (61%), Gaps = 23/292 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT-PEQAAKLC-DRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG+GND++ V N E ++ P AK DR+FGIG+DG+I P + D
Sbjct: 1 MKFTKMHGIGNDYVYV---NCFEEAVSNPSAVAKFVSDRHFGIGSDGLILIKPS-DIADC 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ--DDGKV- 193
M ++N DGS+ MCGNG+RC A++ + +N K S +V T +G+ ++ DGKV
Sbjct: 57 EMDMYNLDGSQGAMCGNGIRCVAKYAYDYGIVN-KTSISVATKSGIKYLDLTLGKDGKVA 115
Query: 194 --KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
KV+MG PIL + +P + + K+Q V+ L VDG +++T VSMGNPH + +
Sbjct: 116 LVKVNMGAPILTSRQIP--VVSTKEQ-VINEPLHVDGETYHITAVSMGNPHAIVY-MDAL 171
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+NL ++KL GPKFE+H FP R NTEFV++I L+MRVWERG+G TLACGTGAC
Sbjct: 172 KNLDIEKL-----GPKFENHINFPDRINTEFVKVIDRHTLQMRVWERGSGETLACGTGAC 226
Query: 312 AVVVAAVLEG--HAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
AV VA+ L G ++ TV L GG L I W ++N VYMTGPA VF G +
Sbjct: 227 AVAVASTLNGLVDEDKPVTVKLLGGDLQILWNRQENLVYMTGPATTVFDGEI 278
>gi|392553775|ref|ZP_10300912.1| diaminopimelate epimerase [Pseudoalteromonas spongiae
UST010723-006]
Length = 276
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 123/292 (42%), Positives = 171/292 (58%), Gaps = 23/292 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
++F K HGLGNDF+++DN + I+ +Q KL DRNFGIG D ++ P D+
Sbjct: 2 LVNFSKMHGLGNDFMVIDNV-TQNVFISKDQIRKLADRNFGIGFDQLLMVEAPYDPDLDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E E CGNG RCFARF+ ++ L + V T +G I + DGKV+V+
Sbjct: 61 HYRIFNADGYEVEQCGNGARCFARFV-RMKGLTNRHRIQVSTKSGNITLHNEKDGKVRVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MG P + VP + + +++ + + C VSMGNPHCV L
Sbjct: 120 MGHPKFDPAKVPFKATKRETTYIIREG------EHTIFCGVVSMGNPHCV---------L 164
Query: 255 KVDKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+VD +N + ++GP E H FP + N F++IISP +K+RVWERGAG TLACG+GAC
Sbjct: 165 EVDDINSDQITKLGPLLESHERFPKKANIGFMQIISPEHIKLRVWERGAGETLACGSGAC 224
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A VV +L+ + V+LPGG L I W+ + + V MTGPAE VF G + +
Sbjct: 225 AAVVVGILQKKLANQVKVELPGGELTINWQGDGHPVKMTGPAEHVFDGQIAI 276
>gi|307546849|ref|YP_003899328.1| diaminopimelate epimerase [Halomonas elongata DSM 2581]
gi|307218873|emb|CBV44143.1| diaminopimelate epimerase [Halomonas elongata DSM 2581]
Length = 277
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 124/291 (42%), Positives = 173/291 (59%), Gaps = 19/291 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF++VD + R+ EQ L DR FGIG D ++ P + D+
Sbjct: 2 LLQFTKMHGLGNDFMVVD-LVTQRARLRDEQIRDLADRRFGIGFDQLLVVEPPRDPDMDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RI+N+DGSE E CGNG RCFARF+ + + L K+ V T G + + DDG+V VD
Sbjct: 61 RYRIYNADGSEVENCGNGARCFARFVLD-QRLTHKREIHVETAGGPLTLVVGDDGRVSVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG+P D+P A+ D+ + +L+VDG + ++ S+GNPH V L+V
Sbjct: 120 MGKPRFAPQDLP--FEADGDRPL--HDLEVDGQQISIGVASLGNPHAV---------LRV 166
Query: 257 DKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + +A +GP E H FP R N F++++S ++++RV+ERG G TLACGTGACA
Sbjct: 167 DDVTTAPVATLGPAIEGHPRFPRRVNAGFMQVVSAHEIRLRVYERGVGETLACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
V + +G E TV LPGG L I+W + + ++ MTGPAE VF G V +N
Sbjct: 227 VACGIRQGLLESPVTVHLPGGELRIDWPDIEANLIMTGPAERVFEGRVAIN 277
>gi|153815011|ref|ZP_01967679.1| hypothetical protein RUMTOR_01228 [Ruminococcus torques ATCC 27756]
gi|145847579|gb|EDK24497.1| diaminopimelate epimerase [Ruminococcus torques ATCC 27756]
Length = 277
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 129/286 (45%), Positives = 178/286 (62%), Gaps = 15/286 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K G+GND++ V+ T + E A K+ D ++G+G+DG+I P + D+ M
Sbjct: 1 MKFTKMQGIGNDYVYVNCLQETIENPS-ELAKKISDWHYGVGSDGLIMINPS-DKADFEM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV---K 194
++N+DGS EMCGNG+RC A+++ + L K S +V T AG+ ++ +DGKV K
Sbjct: 59 EMYNADGSRGEMCGNGIRCVAKYVYDY-GLTDKTSISVETLAGIKYLDLTVEDGKVVLVK 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG+P+L+ +VP ++ + V+ + VDG ++ +TCVSMGNPH V F ++
Sbjct: 118 VDMGKPMLRPEEVPV---VSEKEEVIDEPITVDGQEYRMTCVSMGNPHAVVFIDQD---- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V + L +G KFE+H FP R NTEFV ++ +MRVWERG+G TLACGTGACAV
Sbjct: 171 -VKEFPLETVGVKFENHERFPKRVNTEFVNVLDRHTAQMRVWERGSGETLACGTGACAVA 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
VA L G E TV L GG L I+W E N VYMTGPAEVVF G
Sbjct: 230 VACALNGLTEDEVTVKLLGGDLQIKWDREKNTVYMTGPAEVVFDGE 275
>gi|303327160|ref|ZP_07357602.1| diaminopimelate epimerase [Desulfovibrio sp. 3_1_syn3]
gi|345890538|ref|ZP_08841406.1| diaminopimelate epimerase [Desulfovibrio sp. 6_1_46AFAA]
gi|302863148|gb|EFL86080.1| diaminopimelate epimerase [Desulfovibrio sp. 3_1_syn3]
gi|345046543|gb|EGW50427.1| diaminopimelate epimerase [Desulfovibrio sp. 6_1_46AFAA]
Length = 289
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 138/297 (46%), Positives = 187/297 (62%), Gaps = 24/297 (8%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAAKLCDRNFGIGADGVIFAMP-GVNGTD 135
L F K G+GND++ V N E R+ E A ++ DR+FG+G+DG++ +P GV D
Sbjct: 5 LRFTKMQGIGNDYVYV---NGFEERVDNPGELAKRISDRHFGVGSDGLVLILPSGV--AD 59
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL-IVPEIQDDGKVK 194
MR+FN+DGSE EMCGN RC ++ A + K + T AG+ I+ + + G+V+
Sbjct: 60 LRMRMFNADGSEAEMCGNATRCVGKY-AHDHGIVNKDVIRLETAAGIKIIRLLFEAGEVR 118
Query: 195 ---VDMGEPILKASDVPT----SLSANKD-QSVVKSELDVDGVKWNVTCVSMGNPHCVTF 246
VDMGEP+L +P +L+ +D Q + ++V G + VT VSMGNPH V F
Sbjct: 119 GATVDMGEPVLAPDLIPVVLAPALTEGEDPQRFIARPVEVGGRTYAVTAVSMGNPHAVVF 178
Query: 247 GTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLAC 306
+G +D L+L ++GP FEHH +FP RTNTEFVE+IS +++KMRVWERGAG TLAC
Sbjct: 179 --MQG----IDDLDLPKLGPLFEHHPIFPKRTNTEFVEVISSTKIKMRVWERGAGETLAC 232
Query: 307 GTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
GTGACA VA+VL GH R V+L GG L I+W + D+HVYMTG A VF G +
Sbjct: 233 GTGACAAAVASVLNGHTGRSLDVELRGGVLHIDWDKSDDHVYMTGGAVAVFDGVYFI 289
>gi|226940775|ref|YP_002795849.1| DapF [Laribacter hongkongensis HLHK9]
gi|254767108|sp|C1D8Q0.1|DAPF_LARHH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|226715702|gb|ACO74840.1| DapF [Laribacter hongkongensis HLHK9]
Length = 278
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 131/288 (45%), Positives = 166/288 (57%), Gaps = 15/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
L F K GLGNDF ++D T R+TPEQ KL DR FGIG D ++ P + G D++
Sbjct: 3 LKFTKMQGLGNDFAVLDGVRQT-IRLTPEQIRKLGDRRFGIGFDQLLLVEPPQDAGNDFS 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCFARF+ + L ++ V T G+IVP + DDG V VDM
Sbjct: 62 YRIFNCDGGEVEQCGNGARCFARFVFD-HGLTDRREIRVETARGVIVPRLADDGLVTVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P + +D+P + + V EL+V G VT VSMGNPH V VD
Sbjct: 121 GPPRFRPADIPFVAA----EDAVIHELEVAGQILGVTVVSMGNPHAVQVVDD------VD 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ GP E+H FPAR N F++I S + + +RV+ERG+G TLACGTGACA VVA
Sbjct: 171 TAPVTAFGPLIENHLRFPARVNAGFMQIESRTAICLRVFERGSGETLACGTGACAAVVAG 230
Query: 318 VLEG--HAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ G A+ TV GG L I W + + V+MTGPA VF G + L
Sbjct: 231 IRRGLLDADTPVTVQTRGGELRIRWAGDGHPVWMTGPAVTVFEGEITL 278
>gi|291544783|emb|CBL17892.1| diaminopimelate epimerase [Ruminococcus champanellensis 18P13]
Length = 279
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 130/292 (44%), Positives = 172/292 (58%), Gaps = 20/292 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-AAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K G+GND+I V+ E + PEQ + +L DR FGIG DG+I MP D+
Sbjct: 1 MKFTKMQGIGNDYIYVNCFE--EQVVNPEQLSVRLSDRRFGIGGDGLILIMPS-QIADFK 57
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KV 193
MRIFN+DGSE MCGNG RC +++ E L K T+ T +G+ E+ G V
Sbjct: 58 MRIFNADGSEAMMCGNGTRCIGKYVYE-HGLTNKTHITLETNSGIKYLELHCTGDQVTSV 116
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG+ IL ++P + ++ + V + V +TCVS+GNPH V F +
Sbjct: 117 TVDMGKAILTPREIP--VESDSQEPFVAKPVQVGDRLERLTCVSVGNPHAVVFCDR---- 170
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V+ L+L ++GP FEHH++FP R NTEFV +I L+MRVWERG+G TLACGTGACA
Sbjct: 171 --VEDLDLEKLGPLFEHHAIFPDRVNTEFVRVIDDHTLQMRVWERGSGETLACGTGACAT 228
Query: 314 VVAAVLEGHAERR--CTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAAVL G+ + V L GG L I + + D V MTGPAE VF G + L
Sbjct: 229 TVAAVLNGYCPQGEPILVKLRGGDLTITY-QADGTVMMTGPAEEVFQGEINL 279
>gi|392405661|ref|YP_006442273.1| diaminopimelate epimerase [Turneriella parva DSM 21527]
gi|390613615|gb|AFM14767.1| diaminopimelate epimerase [Turneriella parva DSM 21527]
Length = 289
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/294 (42%), Positives = 177/294 (60%), Gaps = 21/294 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKL-CDRNFGIGADGVIFAMP--GVNGTD 135
L F K GLGND++ ++ P+ P++AA+L CDR++G+GADG++ M N D
Sbjct: 7 LRFAKLEGLGNDYLFTED----SPK-NPQRAARLLCDRHYGVGADGLVLIMAPDNKNEAD 61
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLI--VPEIQDDG-- 191
+ +RIFN DGSE EMCGN +RC +++ + N KQ V T G+I + ++D
Sbjct: 62 FQIRIFNPDGSEAEMCGNAIRCLGKYLYDRGNTK-KQEINVQTMRGIIPCILMVRDGRVY 120
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDV--DGVKWNVTCVSMGNPHCVTFGTK 249
+VK DMGEPIL+ + +P +A +++ V E D + +SMGNPH V +
Sbjct: 121 RVKADMGEPILERAKIPMVCAAGEEEKKVLKEKIYLEDHNTFEFMALSMGNPHVVIWVED 180
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
VD + + GP E++S+FP RTN F++++ +K RVWERG G TLA GTG
Sbjct: 181 ------VDNFPVGKYGPMIENYSLFPNRTNVHFIQMVDEDHIKQRVWERGVGETLASGTG 234
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
ACA VVA VL G +R+ V+L GG L+I W E+DNHVYMTGP + VF G LL
Sbjct: 235 ACAAVVAGVLSGKIKRKAKVELRGGILEIYWSEKDNHVYMTGPCKDVFEGQTLL 288
>gi|392544068|ref|ZP_10291205.1| diaminopimelate epimerase [Pseudoalteromonas piscicida JCM 20779]
Length = 276
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/292 (43%), Positives = 169/292 (57%), Gaps = 23/292 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
F++F K HGLGNDF+++DN + ++ +Q KL DR+FGIG D ++ P D+
Sbjct: 2 FINFSKMHGLGNDFVVIDNV-TQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG+E E CGNG RCFARF+ ++ L K V T G I + DG+V V+
Sbjct: 61 HYRIFNADGNEVEQCGNGARCFARFV-RMKGLTNKHKVCVSTKGGNITLYTEKDGQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MG+P +P ANK ++ D + V C VSMGNPH V +
Sbjct: 120 MGKPNFNPQAIP--FRANKQENTYILRAD----EHTVFCSTVSMGNPHGV---------I 164
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
VD + AE+ GP EHH FP + N F+E++S +K+RVWERGAG TLACGTGAC
Sbjct: 165 IVDSVETAEVATLGPLLEHHERFPQKANIGFMEVVSREYVKLRVWERGAGETLACGTGAC 224
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A VVA +++G E VDLPGG L + W + V MTGPAE VF G + +
Sbjct: 225 AAVVAGIMQGKLEETVRVDLPGGSLQVRWGGQGQVVKMTGPAEHVFDGQIAI 276
>gi|399543549|ref|YP_006556857.1| diaminopimelate epimerase [Marinobacter sp. BSs20148]
gi|399158881|gb|AFP29444.1| Diaminopimelate epimerase [Marinobacter sp. BSs20148]
Length = 328
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 128/289 (44%), Positives = 167/289 (57%), Gaps = 13/289 (4%)
Query: 76 SGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGT 134
G L F K HGLGNDF++VD + T R+ PE +L DR+FGIG D ++ P G+
Sbjct: 33 GGVLRFTKMHGLGNDFMVVDAISQTF-RLRPEMIRELADRHFGIGFDQLLVVEPPGLPDV 91
Query: 135 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVK 194
D+ RIFN+DGSE E CGNG RCFARF+ + + L K+ V T G+I + DG VK
Sbjct: 92 DFRYRIFNADGSEVEQCGNGARCFARFVRD-QRLTNKKVMRVQTAGGIIELRMGKDGLVK 150
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
V+MG P L+ VP S D+ +DV+G ++ VSMGNPH V
Sbjct: 151 VNMGVPRLEPDTVPFS----ADEFAPVYNVDVNGQTIELSAVSMGNPHGVLL------TA 200
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
VD +A +GP E H FPA+ N F++I+ +++RV+ERG G TLACGTGACA V
Sbjct: 201 DVDNAPVATLGPLLEKHWRFPAKANIGFMQIVDRGHIRLRVFERGCGETLACGTGACAAV 260
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA L G + R V+L GG L IEW+ + V M GP VF G + L
Sbjct: 261 VAGCLRGLLDPRVEVELLGGRLIIEWQGQGAAVMMDGPVANVFEGQLRL 309
>gi|339010963|ref|ZP_08643531.1| diaminopimelate epimerase [Brevibacillus laterosporus LMG 15441]
gi|338771951|gb|EGP31486.1| diaminopimelate epimerase [Brevibacillus laterosporus LMG 15441]
Length = 288
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 128/290 (44%), Positives = 176/290 (60%), Gaps = 22/290 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT----PEQAAKLCDRNFGIGADGVIFAMPGVNGT 134
+ F K HG+GND++ V N E +T PE + ++ ++FGIGADG+I MP
Sbjct: 1 MRFTKMHGIGNDYVYV---NCFEESLTNVDLPELSRRVSQQHFGIGADGLILIMPSTI-A 56
Query: 135 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVP--EIQDDGK 192
D+ MR+FN+DGSE CGNG+RC ++++ + L + SFT+ T G++ P I DGK
Sbjct: 57 DFRMRVFNNDGSEARNCGNGLRCVSKYVFD-HGLTKETSFTIETNGGIVTPVVHIGADGK 115
Query: 193 VK---VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTK 249
V+ VDMG+P L +P ++ + D + ++ ++G T VSMGNPH V K
Sbjct: 116 VEKVTVDMGKPRLLRGQIP--MTGDPDTKAIGEQVQINGRTLTFTAVSMGNPHVVILTDK 173
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
+ + + GP E H++FP R N EF+ + +PS + RVWERG+G TLACGTG
Sbjct: 174 ------ISEEEVTTYGPLLEKHALFPERANIEFISVNTPSDITFRVWERGSGVTLACGTG 227
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
ACA +VAAVLEG AER T+ L GG L IEW+E D HVYMTG A VF G
Sbjct: 228 ACAALVAAVLEGKAERMATIHLLGGDLQIEWREADQHVYMTGAAAEVFAG 277
>gi|374621535|ref|ZP_09694066.1| Diaminopimelate epimerase [Ectothiorhodospira sp. PHS-1]
gi|373940667|gb|EHQ51212.1| Diaminopimelate epimerase [Ectothiorhodospira sp. PHS-1]
Length = 271
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/285 (43%), Positives = 170/285 (59%), Gaps = 21/285 (7%)
Query: 85 HGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTD--YTMRIFN 142
HGLGNDF+++D + R+TP+ L R G+G D V+ P + + + RIFN
Sbjct: 2 HGLGNDFVVIDGVRR-QVRLTPDHVRFLAHRRLGVGCDQVLMVEPPTDPSRAAFRYRIFN 60
Query: 143 SDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPIL 202
+DG+E E CGNG RCFA F+ + + L G+ V T AGLI +++ DG+V VDMG P L
Sbjct: 61 ADGNEVEQCGNGARCFAVFVRD-QGLTGETRIPVETAAGLITLQVEADGQVTVDMGPPRL 119
Query: 203 KASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLA 262
++P D++ L V+ + VSMGNPH V L+VD + A
Sbjct: 120 TPWEIPFE----ADKAAPWYTLMVNDRALEIGAVSMGNPHAV---------LRVDNVRTA 166
Query: 263 EI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVL 319
E+ GP E H FP R N F+E++SP+ +++RV+ERGAG TLACGTGACA VVA +
Sbjct: 167 EVARLGPAIEGHPRFPRRVNAGFMEVVSPTHIRLRVYERGAGETLACGTGACAAVVAGRI 226
Query: 320 EGHAERRCTVDLPGGPLDIEWK-EEDNHVYMTGPAEVVFYGSVLL 363
+G E R VDLPGG L I+W ED+ V+MTGPA VF G++ L
Sbjct: 227 QGLLEDRVNVDLPGGRLVIQWAGREDDPVFMTGPATSVFTGTIEL 271
>gi|292493803|ref|YP_003529242.1| diaminopimelate epimerase [Nitrosococcus halophilus Nc4]
gi|291582398|gb|ADE16855.1| diaminopimelate epimerase [Nitrosococcus halophilus Nc4]
Length = 276
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/284 (43%), Positives = 158/284 (55%), Gaps = 13/284 (4%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIF-AMPGVNGTDYTMR 139
F K GLGNDF+++D S +T Q ++ DR GIG D V+ A P D+ R
Sbjct: 5 FTKMQGLGNDFVVIDT-ISQSLSLTASQVRRIADRRLGIGCDQVLLVAPPPSPEVDFGYR 63
Query: 140 IFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
IFN+DG E E CGNG RCFARF+ E + L GK+ V T G+I ++ D +V VDMG
Sbjct: 64 IFNADGGEVEQCGNGARCFARFVRE-QGLTGKERLQVQTAGGVIRLHLETDKQVTVDMGV 122
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P ++P D + L+ D + + VSMGNPHCV + +D
Sbjct: 123 PRFAPDEIPFKADHEADSYL----LEFDKQRVEIGAVSMGNPHCVL------RVAAIDAA 172
Query: 260 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVL 319
+A GP E H FP R N FVE+ISP +++RV+ERGAG T ACGTGACA +V
Sbjct: 173 PIACWGPILERHPRFPQRVNVGFVEVISPGHIRLRVYERGAGETPACGTGACAAMVIGRR 232
Query: 320 EGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
G + VDLPGG L I W E V+MTGPAE VF G++ L
Sbjct: 233 RGWLSEQVNVDLPGGRLGIHWAGEGRSVWMTGPAETVFEGAIEL 276
>gi|127511257|ref|YP_001092454.1| diaminopimelate epimerase [Shewanella loihica PV-4]
gi|166225756|sp|A3Q9P7.1|DAPF_SHELP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|126636552|gb|ABO22195.1| diaminopimelate epimerase [Shewanella loihica PV-4]
Length = 279
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 119/288 (41%), Positives = 168/288 (58%), Gaps = 15/288 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+HF K HGLGNDF++VD + +PEQ +L DRNFGIG D ++ P + D+
Sbjct: 1 MIHFTKMHGLGNDFMVVDGV-TQNVYFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + L KQ V T +G + ++ DG V V+
Sbjct: 60 HYRIFNADGSEVEQCGNGARCFARFVKS-KGLINKQKIKVSTSSGKMTLRLERDGSVTVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P+L+ S +P + + ++++++ + VSMGNPHCV L+V
Sbjct: 119 MGIPVLEPSRIPFNAKKAEKTYLLQADMPEGMQTFLCGAVSMGNPHCV---------LEV 169
Query: 257 DKL---NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + ++ IG H FP N F++++ + +K+RV+ERGA TLACG+GACA
Sbjct: 170 DDVANADVERIGSLLTKHERFPKGVNVGFMQVVDANHIKLRVYERGAAETLACGSGACAA 229
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V L+G RR VDLPGG L I W+ E ++MTGPAE V+ G +
Sbjct: 230 VAVGQLQGKLARRVRVDLPGGSLTINWEGEGKPLWMTGPAEHVYDGQI 277
>gi|325288871|ref|YP_004265052.1| diaminopimelate epimerase [Syntrophobotulus glycolicus DSM 8271]
gi|324964272|gb|ADY55051.1| diaminopimelate epimerase [Syntrophobotulus glycolicus DSM 8271]
Length = 282
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 135/293 (46%), Positives = 177/293 (60%), Gaps = 21/293 (7%)
Query: 79 LHFVKYHGLGNDFILVDN-----RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNG 133
+ F+K HGLGNDF+ +D N+ E A +LC R GIG DG++ +P
Sbjct: 1 MDFIKMHGLGNDFVCLDRFLDPAENNPAETDYSELAQRLCHRQLGIGGDGLLLILPS-EK 59
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGK 192
D MRIFN+DGSEPEMCGNG+RCFAR+I E + K TV T AG+ +Q DG+
Sbjct: 60 ADARMRIFNADGSEPEMCGNGIRCFARYIYE-QGYVQKDQLTVETLAGIKPIRLQMKDGR 118
Query: 193 V---KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTK 249
V VDMG+P L A ++P + +++ VV L+V G + +T VS+GNPHCV F
Sbjct: 119 VYGVTVDMGKPRLSAKEIPVNDHSDR---VVNKRLEVLGKEIGITAVSVGNPHCVLFLDD 175
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
+ ++ +G E H FPA+TN EFV + S ++ ++VWERG G TLACGTG
Sbjct: 176 FAET------DVLAVGAALEKHPFFPAKTNVEFVRVDSGEEITVKVWERGVGPTLACGTG 229
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
ACA VVAAVL G RR TV LPGG L IE+ EE + MTGPA+ VF G ++
Sbjct: 230 ACASVVAAVLNGRTGRRLTVHLPGGDLQIEYAEE-GRILMTGPAQYVFRGQLI 281
>gi|319935421|ref|ZP_08009858.1| diaminopimelate epimerase [Coprobacillus sp. 29_1]
gi|319809637|gb|EFW06050.1| diaminopimelate epimerase [Coprobacillus sp. 29_1]
Length = 280
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/287 (42%), Positives = 175/287 (60%), Gaps = 19/287 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G+GND+I +D + P + P K+ DR+FGIG+DGVI + D+ M
Sbjct: 2 LKFTKMEGIGNDYIYIDGIHQDVP-MNPHFITKISDRHFGIGSDGVI-VIQESEICDFKM 59
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLI-VPEIQDDGKV---K 194
R+FN DGSE +MCGNG+RCFA+F+ + L K + T G+ V I D+ KV +
Sbjct: 60 RMFNLDGSEGKMCGNGIRCFAKFVYD-HQLTKKTYLEIETLGGIKKVWLIIDNNKVQYVR 118
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
V+MG+PILK+ ++P + ++ ++VDG + +T +SMGNPH V + +
Sbjct: 119 VNMGQPILKSKEIPCLFDK---EEMINEPIEVDGQVYYLTSLSMGNPHTVIY-------M 168
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
N+ E+G KFE H +FP NTEFVE+++ LKMRVWERG+G T+ACGTGACAV+
Sbjct: 169 NHLDFNIQELGIKFEKHILFPESVNTEFVEVVNRQYLKMRVWERGSGETMACGTGACAVM 228
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
A+ + G + V+L GG LDI + E+ ++M+GPA VF G +
Sbjct: 229 YASYINGLCDNHVQVELLGGILDISY--ENGEIWMSGPATTVFEGII 273
>gi|20807956|ref|NP_623127.1| diaminopimelate epimerase [Thermoanaerobacter tengcongensis MB4]
gi|22256735|sp|Q8R9S4.1|DAPF_THETN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|20516527|gb|AAM24731.1| Diaminopimelate epimerase [Thermoanaerobacter tengcongensis MB4]
Length = 274
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/287 (42%), Positives = 172/287 (59%), Gaps = 19/287 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HGLGNDFI+++ + E E A KLCDR+FGIGADG++ P + D M
Sbjct: 1 MRFTKMHGLGNDFIVIE---AVEGVDYSELAVKLCDRHFGIGADGLLVVEPS-HIADIKM 56
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-QDDGK---VK 194
RIFN+DGSE EMCGNG RCFA+++ E + + KQ TV T AG+I+PE+ ++GK VK
Sbjct: 57 RIFNADGSEAEMCGNGSRCFAKYVYE-KGIVSKQKMTVETLAGVIMPELFVENGKIKSVK 115
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
V MG PI ++S +P ++ Q + + +DG + ++ V +G PH + F + ++
Sbjct: 116 VYMGSPIFESSKIPVK---SEKQKFIDEPVKIDGKTYRLSSVRVGVPHTILFVSSFEESF 172
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ E+GPK E S+FP TN +FV++ + +R WERG G TLACG+GA A
Sbjct: 173 ------MKELGPKIEKSSLFPEGTNVDFVKVEDEENISVRTWERGVGLTLACGSGASASA 226
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V + L G R V G L +EWK EDN +Y++G E VF G +
Sbjct: 227 VVSSLLGRTRRSVNVHFKAGVLLVEWK-EDNSIYLSGEVEEVFRGEI 272
>gi|393763558|ref|ZP_10352176.1| diaminopimelate epimerase [Alishewanella agri BL06]
gi|397171648|ref|ZP_10495048.1| diaminopimelate epimerase [Alishewanella aestuarii B11]
gi|392605480|gb|EIW88373.1| diaminopimelate epimerase [Alishewanella agri BL06]
gi|396086761|gb|EJI84371.1| diaminopimelate epimerase [Alishewanella aestuarii B11]
Length = 276
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 128/292 (43%), Positives = 166/292 (56%), Gaps = 23/292 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L+F K HGLGNDF++VD S +T EQ +L DRNFGIG D ++ P + D+
Sbjct: 2 LLNFSKMHGLGNDFMMVDAV-SQNIFLTKEQIKQLADRNFGIGFDQLLMVEPPYDPDLDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFA+F+ L K V T +G I ++ DG+V V+
Sbjct: 61 HYRIFNADGSEVEQCGNGARCFAKFV-RYRGLTNKTKINVSTKSGKITLYVEQDGQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MG P L+ + VP + ++ SE + V C VSMGNPH V L
Sbjct: 120 MGVPQLEPARVPFKAQKQEATYILLSE------QQTVFCGVVSMGNPHAV---------L 164
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
V L+ A + GP+ E H FP + N F+++++P +K+RVWERGAG TLACGTGAC
Sbjct: 165 DVPDLDTAPVRTLGPELELHERFPEKANIGFMQVLNPQHIKLRVWERGAGETLACGTGAC 224
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A VV L+ ++ VDLPGG L I W V MTGPAE VF G + L
Sbjct: 225 AAVVVGQLQKKLAQQVRVDLPGGSLQIRWNGPGQPVKMTGPAEHVFDGQLTL 276
>gi|325678886|ref|ZP_08158484.1| diaminopimelate epimerase [Ruminococcus albus 8]
gi|324109390|gb|EGC03608.1| diaminopimelate epimerase [Ruminococcus albus 8]
Length = 1351
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 142/323 (43%), Positives = 188/323 (58%), Gaps = 37/323 (11%)
Query: 57 SSIHAPESASRTSFLD----RRESGFLHFVKYHGLGNDFI-------LVDNRNSTEPRIT 105
+SI + + S T +D RRE LHF K HG GND++ ++DN
Sbjct: 1046 ASIRSKYNESNTEIVDINNMRREKTTLHFTKMHGCGNDYVYFNCFDRMIDN--------- 1096
Query: 106 PEQ-AAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 164
PE A L DR+FG+G DGVI D MR+FN DGSE MCGNG+RC A+F+ +
Sbjct: 1097 PEGFALNLSDRHFGVGGDGVILVCRS-KVADGRMRMFNLDGSEGRMCGNGIRCVAKFMRD 1155
Query: 165 LENLNGKQSFTVHTGAGLIVPEI-QDDGKVK---VDMGEPILKASDVPTSLSANKDQSVV 220
L + T+ T +G+I ++ + G+V VDMG IL+ +P +L A+++ VV
Sbjct: 1156 -NGLVDRDRMTIETLSGIIKVKLSRHYGEVNGATVDMGAAILEPERIPCTLPADENGRVV 1214
Query: 221 KSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNT 280
E+++ G K VTCVSMGNPHC+ F +D + + +IGPKFEH +FP R NT
Sbjct: 1215 DREVEIAGEKHRVTCVSMGNPHCIVFMNN------IDDMEIEKIGPKFEHDPIFPERVNT 1268
Query: 281 EFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHA--ERRCTVDLPGGPLDI 338
EF+++I LKMRVWERG+G T ACGTGACA VVAAVL G+ TV L GG L I
Sbjct: 1269 EFIKVIDSHTLKMRVWERGSGETFACGTGACAAVVAAVLNGYCPMNEEVTVMLRGGNLTI 1328
Query: 339 EWKEEDNHVYMTGPAEVVFYGSV 361
+ E + VYMTG A VF G +
Sbjct: 1329 RYTE--DTVYMTGEAVTVFEGDI 1349
>gi|300113123|ref|YP_003759698.1| diaminopimelate epimerase [Nitrosococcus watsonii C-113]
gi|299539060|gb|ADJ27377.1| diaminopimelate epimerase [Nitrosococcus watsonii C-113]
Length = 276
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 160/286 (55%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K GLGNDF+++D S +T Q + +R GIG D V+ P + D+
Sbjct: 3 IAFTKMQGLGNDFVVIDA-FSQPLFLTASQVRWIANRRLGIGCDQVLLVTPASSPAIDFG 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DG E E CGNG RCFARF+ E L K + V T G+I +++ DG++ VDM
Sbjct: 62 YRIFNADGGEVEQCGNGARCFARFVRE-RKLTDKNTLRVQTAGGIIQLQLEPDGQITVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P +P + D L++DG + + VS+GNPHCV + VD
Sbjct: 121 GVPRFAPQQIPFKVDHEAD----YYSLELDGQQLEIGVVSLGNPHCVL------RVPAVD 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+A GP E+H FP R N F +I+SPS L++RV+ERGAG T ACGTGACA VV
Sbjct: 171 AAPVAHWGPLLENHPCFPQRVNVGFAQIVSPSHLRLRVYERGAGETPACGTGACAAVVIG 230
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
G + VDLPGG L I W+ + V+M+GPAE VF GS L
Sbjct: 231 KRRGWLSGQVKVDLPGGRLGIRWEGDGQSVWMSGPAETVFEGSFDL 276
>gi|254492257|ref|ZP_05105431.1| diaminopimelate epimerase [Methylophaga thiooxidans DMS010]
gi|224462582|gb|EEF78857.1| diaminopimelate epimerase [Methylophaga thiooxydans DMS010]
Length = 281
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 164/288 (56%), Gaps = 19/288 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D T +T Q L DR FG+G D ++ P D+
Sbjct: 1 MLKFSKMHGLGNDFVVIDAIEQT-VELTSAQIQFLSDRRFGVGCDQLLLVEKPQTAEADF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E CGNG RCFARF+ + + L K + V T +GLI P +Q DG V VD
Sbjct: 60 RYRIFNADGGEVAQCGNGARCFARFVRD-KGLTTKDTIAVETASGLIYPTLQADGSVTVD 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG+PI + + +P ++ + +D G K + +SMGNPH V + V
Sbjct: 119 MGKPIFEPAKIPFQ---AEEATTYMLTIDEHGKK-EIAALSMGNPHAV---------MLV 165
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + +A E+GP E H FP R N F++I+ +++RV+ERGAG T ACGTGACA
Sbjct: 166 DDVTVASVLELGPLIESHERFPERVNAGFMQIVDSDSIRLRVFERGAGETSACGTGACAA 225
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VV+ + G TV LPGG L I W ++D V+MTGPA+ VF G +
Sbjct: 226 VVSGIKRGLLNTMVTVSLPGGDLQISWPDQDASVWMTGPAQHVFDGEI 273
>gi|410637744|ref|ZP_11348315.1| diaminopimelate epimerase [Glaciecola lipolytica E3]
gi|410142712|dbj|GAC15520.1| diaminopimelate epimerase [Glaciecola lipolytica E3]
Length = 276
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 176/289 (60%), Gaps = 19/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++DN + + ++ +L DRNFGIG D ++ P + D+
Sbjct: 3 IQFSKMHGLGNDFVVIDNV-TQNVFFSKDKIQQLADRNFGIGFDQLLLVEPPYDPEQDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFA+F+ +++ L + V T +G +V ++ DG+V V+M
Sbjct: 62 YRIFNADGSEVSQCGNGARCFAKFV-KIKGLTNRNKVVVSTKSGKMVLYLEKDGQVTVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G PI + + +P L ANK++++ + + V VSMGNPHCV L+VD
Sbjct: 121 GRPIFEPAKIP--LKANKEENIYL--IRAQDQTFMVGSVSMGNPHCV---------LEVD 167
Query: 258 KLNLAE---IGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ A+ IGP E H FP N F++I++ + +K+RV ERG+G TLACG+GACA V
Sbjct: 168 DVQTADVENIGPLLETHERFPEAVNVGFMQIVNENHIKLRVHERGSGETLACGSGACAAV 227
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
++G + VDLPGG L I W+ +DN + MTGPAE +F G++++
Sbjct: 228 AIGQIQGKLSKDVLVDLPGGSLKIRWQGKDNVLKMTGPAEHIFDGTLII 276
>gi|375110139|ref|ZP_09756373.1| diaminopimelate epimerase [Alishewanella jeotgali KCTC 22429]
gi|374569766|gb|EHR40915.1| diaminopimelate epimerase [Alishewanella jeotgali KCTC 22429]
Length = 276
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 127/292 (43%), Positives = 166/292 (56%), Gaps = 23/292 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L+F K HGLGNDF++VD S +T EQ +L DRNFG+G D ++ P + D+
Sbjct: 2 LLNFSKMHGLGNDFMMVDAV-SQNIFLTKEQIKQLADRNFGVGFDQLLMVEPPYDPDLDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFA+F+ L K V T +G I ++ DG+V V+
Sbjct: 61 HYRIFNADGSEVEQCGNGARCFAKFV-RYRGLTNKTKINVSTKSGKITLYVEQDGQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MG P L+ + VP + ++ SE + V C VSMGNPH V L
Sbjct: 120 MGVPQLEPARVPFKAQKQEATYILLSE------QQTVFCGVVSMGNPHAV---------L 164
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
V L+ A + GP+ E H FP + N F+++++P +K+RVWERGAG TLACGTGAC
Sbjct: 165 DVPDLDAAPVRTLGPELELHERFPEKANIGFMQVLNPQHIKLRVWERGAGETLACGTGAC 224
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A VV L+ ++ VDLPGG L I W V MTGPAE VF G + L
Sbjct: 225 AAVVVGQLQKKLAQQVRVDLPGGSLQIRWNGPGQPVKMTGPAEHVFDGQLTL 276
>gi|332289910|ref|YP_004420762.1| diaminopimelate epimerase [Gallibacterium anatis UMN179]
gi|330432806|gb|AEC17865.1| diaminopimelate epimerase [Gallibacterium anatis UMN179]
Length = 274
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 125/286 (43%), Positives = 169/286 (59%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + + + +L DRN GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDGITQS-VYFSEDVIRRLADRNRGIGFDQLLLVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE E CGNG RCFARF+ L+ L K+ V T G IV + DD V+V+M
Sbjct: 60 YRIFNADGSEVEQCGNGARCFARFV-RLKGLTNKKEINVSTAKGKIVLIVNDDETVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEPI + + VP ANK + D+ V V VSMGNPHCV Q V
Sbjct: 119 GEPIWEPAKVP--FIANKFEKNYILRTDIQTVLCGV--VSMGNPHCVL------QVEDVK 168
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
N+ ++GP EHH FPAR N F+++++ Q+K+RV+ERGAG T ACGTGACA V
Sbjct: 169 TANVEQLGPLLEHHERFPARANIGFMQVLNRKQIKLRVFERGAGETQACGTGACAAVAVG 228
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G + + V+LPGG L IEW+ +YMTG A V+ G++ L
Sbjct: 229 IMQGLLDNQVEVELPGGKLMIEWQGVGYPLYMTGDATFVYDGNIQL 274
>gi|188586527|ref|YP_001918072.1| diaminopimelate epimerase [Natranaerobius thermophilus JW/NM-WN-LF]
gi|229813235|sp|B2A663.1|DAPF_NATTJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|179351214|gb|ACB85484.1| Diaminopimelate epimerase [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 299
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 131/303 (43%), Positives = 178/303 (58%), Gaps = 30/303 (9%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN---GTD 135
+ F K HGLGNDFIL+ + R P+ A +LCDR FGIGADG++ N D
Sbjct: 1 MKFEKMHGLGNDFILMKDFQ----RNYPDLAKRLCDRRFGIGADGLVIYSSCKNSNINAD 56
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL----------IVP 185
Y MRI+NSDGSE EMCGN +RC A+++A+ E +GK+ + T AG+ ++
Sbjct: 57 YQMRIYNSDGSEAEMCGNAIRCLAKYLAKTEETDGKR-LAIATTAGIKRVEIVENFDLMG 115
Query: 186 EIQDDGKV-------KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSM 238
EI G V KV+M +P+LK+SD+P ++ +++ + +D + +T VS
Sbjct: 116 EINLSGMVGSQEQLVKVNMEKPLLKSSDIPLAVKNDRNDIARQRPIDTPYGIYYLTEVST 175
Query: 239 GNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWER 298
G PH V F QNL + L E+GP E H +FP TN EFV++ S + L+++VWER
Sbjct: 176 GPPHAVIFV----QNLLP-EEQLLELGPIIEKHDLFPYGTNVEFVKVESSNHLRVQVWER 230
Query: 299 GAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFY 358
GAG TLACGTGACAVVVAA + G V+LPGG L I W +YM GPAE V+
Sbjct: 231 GAGKTLACGTGACAVVVAATINGFCNGMAYVELPGGKLFINWDNNTEELYMIGPAEHVYS 290
Query: 359 GSV 361
G +
Sbjct: 291 GEL 293
>gi|350552837|ref|ZP_08922029.1| Diaminopimelate epimerase [Thiorhodospira sibirica ATCC 700588]
gi|349792801|gb|EGZ46649.1| Diaminopimelate epimerase [Thiorhodospira sibirica ATCC 700588]
Length = 278
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 169/289 (58%), Gaps = 21/289 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN--GTDY 136
+ F K HGLGNDF+++D N +TPEQ L DR FG+G D V+ + G +
Sbjct: 3 IEFTKMHGLGNDFVVIDAINQCV-TLTPEQVRHLADRRFGVGCDQVLLVERPTSDSGAAF 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E E CGNG RCFA F+ + L+ + + V T AGLI +++DD +V V+
Sbjct: 62 RYRIFNADGQEVEQCGNGARCFAVFVRQ-RGLSDEATLVVETLAGLIQLQLEDDDQVTVN 120
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L+ +P + + LDV+G V VSMGNPH V L+V
Sbjct: 121 MGPPALEPWQIPFDAPRARTAYL----LDVEGHSHEVGVVSMGNPHAV---------LRV 167
Query: 257 DKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+++ LA +GP E H FP + N F+E++SP ++++RV+ERG G TLACGTGACA
Sbjct: 168 EQVATAPLARLGPLIERHPRFPRQVNVGFMELVSPQEIRLRVYERGVGETLACGTGACAA 227
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWK-EEDNHVYMTGPAEVVFYGSV 361
VV L+G + + V LPGG LDI W + +HV MTGPA VF G +
Sbjct: 228 VVVGQLQGLLDEQVRVVLPGGALDIHWSGDPADHVIMTGPATSVFSGVI 276
>gi|352100628|ref|ZP_08958215.1| diaminopimelate epimerase [Halomonas sp. HAL1]
gi|350601048|gb|EHA17103.1| diaminopimelate epimerase [Halomonas sp. HAL1]
Length = 277
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 124/288 (43%), Positives = 165/288 (57%), Gaps = 13/288 (4%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
LHF K HGLGNDF++VD + R+ Q L DR FGIG D ++ P + D+
Sbjct: 2 LLHFTKMHGLGNDFVMVD-LVTQRARLDEAQVRALADRRFGIGFDQLLVVEPPRDPEMDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RI+N+DGSE E CGNG RCFARF+ + + L K V T G +V +Q DG V+VD
Sbjct: 61 RYRIYNADGSEVENCGNGARCFARFVRD-QRLTHKHEIHVETAGGPLVLTVQLDGMVRVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P + S + A+ DQ + +L V + VSMGNPH V Q V
Sbjct: 120 MGRP--RFSPLALPFDASGDQPL--HQLAVGDETLQIGVVSMGNPHAVI------QVDNV 169
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
D + +GP E H FP R N F++++SPS++++RV+ERG+G TLACGTGACA V +
Sbjct: 170 DTAPVERLGPLVEAHPRFPKRVNVGFMQVVSPSEIRLRVYERGSGETLACGTGACAAVAS 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
+ +G + V LPGG L IEW + + + M GPA VF G V LN
Sbjct: 230 GIRQGLLKSPVKVHLPGGELSIEWPDPEGALTMVGPATRVFDGRVALN 277
>gi|392310806|ref|ZP_10273340.1| diaminopimelate epimerase [Pseudoalteromonas citrea NCIMB 1889]
Length = 276
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/292 (42%), Positives = 170/292 (58%), Gaps = 23/292 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
F++F K HGLGNDF++VDN + ++ +Q KL +R+FG+G D ++ P D+
Sbjct: 2 FVNFSKMHGLGNDFMVVDNV-TQNVFLSRDQIKKLANRHFGVGFDQLLLVEAPYSPELDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ ++ L K +V T +G I I+ DG+V V+
Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFV-RMKGLTNKHKISVSTKSGNITLYIEKDGQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MG P S +P + + +++++ V C VSMGNPHCV +
Sbjct: 120 MGNPHFAPSSIPFKATKPELTYIMRAD------DQTVFCGVVSMGNPHCV---------V 164
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+VD + A++ GP EHH FP R N F++II+ +K+RVWERGA TLACG+GAC
Sbjct: 165 EVDDIETADVSTLGPLLEHHERFPERANIGFMQIINNEHIKLRVWERGAQETLACGSGAC 224
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A V + + VDLPGG L I W+ E + V MTGPAE VF G + L
Sbjct: 225 AAVAVGIAQKKLASTVQVDLPGGSLQIRWQGEGHAVKMTGPAEHVFDGQIAL 276
>gi|167855050|ref|ZP_02477823.1| glucosamine-6-phosphate deaminase [Haemophilus parasuis 29755]
gi|219872103|ref|YP_002476478.1| diaminopimelate epimerase [Haemophilus parasuis SH0165]
gi|254767106|sp|B8F878.1|DAPF_HAEPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|167853788|gb|EDS25029.1| glucosamine-6-phosphate deaminase [Haemophilus parasuis 29755]
gi|219692307|gb|ACL33530.1| diaminopimelate epimerase [Haemophilus parasuis SH0165]
Length = 274
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/284 (42%), Positives = 169/284 (59%), Gaps = 13/284 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++D + +T E K DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVIDGV-TQNVYLTEELIRKWADRHRGVGFDQLLLVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T G +V +QDDG+V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKQDIGVSTAKGKMVLSLQDDGQVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEPI + + +P +ANK + D+ V V VSMGNPHCV Q +
Sbjct: 119 GEPIWEPAQIP--FTANKFEKNYILRTDIQTVLCGV--VSMGNPHCVL------QVENIQ 168
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
N+ E+G E H FP R N F+++I+ + +K+RV+ERGAG T ACG+GAC V
Sbjct: 169 TANVNELGALLERHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVAVG 228
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+++G + R VDLPGG L IEW+ + +YMTG AE ++ G+V
Sbjct: 229 IMQGLLDSRVQVDLPGGTLHIEWQGVGSPLYMTGDAEHIYDGAV 272
>gi|392539830|ref|ZP_10286967.1| diaminopimelate epimerase [Pseudoalteromonas marina mano4]
Length = 276
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/290 (42%), Positives = 167/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
++F K HGLGNDF+++DN + ++ +Q KL DR+FGIG D ++ P D+
Sbjct: 2 LVNFSKMHGLGNDFVVIDNI-TQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG+E E CGNG RCFARF+ ++ L K +V T +G + I+ DG+V V+
Sbjct: 61 HYRIFNADGTEVEQCGNGARCFARFV-RMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P + S +P S + ++++E VSMGNPHCV L+V
Sbjct: 120 MGHPNFEPSKIPLKASKRELTYIIRAEEHT----VFSGAVSMGNPHCV---------LEV 166
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A++ GP E+H FP R N F+++IS +K+RVWERG TLACGTGACA
Sbjct: 167 DDITTAQVDVLGPLLENHERFPQRANIGFMQVISQEHIKLRVWERGVNETLACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+V ++ VDLPGG L I W E + V MTGPAE VF G V L
Sbjct: 227 MVIGHMQSKLSSAVQVDLPGGTLQIRWSGEGHPVRMTGPAEHVFDGQVAL 276
>gi|302671743|ref|YP_003831703.1| diaminopimelate epimerase DapF [Butyrivibrio proteoclasticus B316]
gi|302396216|gb|ADL35121.1| diaminopimelate epimerase DapF [Butyrivibrio proteoclasticus B316]
Length = 307
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 177/310 (57%), Gaps = 28/310 (9%)
Query: 79 LHFVKYHGLGNDFILVD-NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDY 136
+ F K HG GND++ VD ++ E E A + DR+FGIG+DG+IF P + D+
Sbjct: 1 MFFTKMHGCGNDYVYVDGSKEIIEQSKKSEIARIVSDRHFGIGSDGLIFINPVDDDSIDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAG-LIVPEIQDDG---K 192
M ++N+DGS EMCGNG+RC A+++ + + V G I EI D
Sbjct: 61 EMEMYNADGSRSEMCGNGIRCVAKYVYDNRLTDKTDLVIVSAGKKKYINLEIGTDNLVFS 120
Query: 193 VKVDMGEPILKASDVPTSLSAN--KDQS----------------VVKSELDVDGVKWNVT 234
VKVDMG PIL AS+VP ++ ++ D+S V+ + + +DG +W +T
Sbjct: 121 VKVDMGAPILAASEVPVAVKSDISTDRSSLPSATRELLSSMPDIVIDTPVIIDGKEWKIT 180
Query: 235 CVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMR 294
CVSMGNPH V F +++ +D + +IGP+FE++S+FP RTNTEFV++ + MR
Sbjct: 181 CVSMGNPHAVVFLP---EDVNLDSFEIEKIGPRFENNSIFPNRTNTEFVKVDDRGNVHMR 237
Query: 295 VWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWK-EEDNHVYMTGPA 353
VWERG G TLACGTG CA VA VL G + R V + GG + W ++ V M GPA
Sbjct: 238 VWERGTGETLACGTGCCATTVACVLNGLTDNRVAVHVLGGIVTCTWDGNAESSVIMEGPA 297
Query: 354 EVVFYGSVLL 363
VF G + L
Sbjct: 298 TTVFTGEIDL 307
>gi|359394682|ref|ZP_09187735.1| Diaminopimelate epimerase [Halomonas boliviensis LC1]
gi|357971929|gb|EHJ94374.1| Diaminopimelate epimerase [Halomonas boliviensis LC1]
Length = 277
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/288 (43%), Positives = 164/288 (56%), Gaps = 13/288 (4%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
LHF K HGLGNDF++VD + R+ Q L DR FGIG D ++ P + D+
Sbjct: 2 LLHFTKMHGLGNDFVMVD-LVTQRARLDEAQIRALADRRFGIGFDQLLVVEPPRDPEMDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RI+N+DGSE E CGNG RCFARF+ + + L K V T G +V +Q DG V+VD
Sbjct: 61 RYRIYNADGSEVENCGNGARCFARFVRD-QRLTHKHEIHVETAGGPLVLTVQHDGMVRVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P + S + A DQ + +L V + VSMGNPH V Q V
Sbjct: 120 MGRP--RFSPLALPFDAPGDQPL--HQLVVGDETLQIGVVSMGNPHAVI------QVANV 169
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
D + +GP E H FP R N F++++SPS++++RV+ERG+G TLACGTGACA V +
Sbjct: 170 DDAPVERLGPLVEAHPRFPKRVNVGFMQVLSPSEIRLRVYERGSGETLACGTGACAAVAS 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
+ +G + V LPGG L IEW + + + M GPA VF G V LN
Sbjct: 230 GIRQGLLKSPVKVHLPGGELSIEWPDPEGALTMVGPATRVFDGRVALN 277
>gi|335042136|ref|ZP_08535163.1| diaminopimelate epimerase [Methylophaga aminisulfidivorans MP]
gi|333788750|gb|EGL54632.1| diaminopimelate epimerase [Methylophaga aminisulfidivorans MP]
Length = 282
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 165/285 (57%), Gaps = 12/285 (4%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNG-TDY 136
L F K HGLGNDFI++ N + +T EQ + DR+FGIG D ++ + D+
Sbjct: 1 MLKFSKMHGLGNDFIVI-NAIQQKVELTTEQIRFMADRHFGIGCDQLLLVEKASSSDVDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E CGNG RCFAR++ + L K + V T +G+I P IQ DG V VD
Sbjct: 60 RYRIFNADGGEVSQCGNGARCFARYVRDY-GLTTKDTIAVETASGIIYPTIQTDGLVSVD 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG+P+ VP ++ ++ + + D D V+ + VSMGNPH V V
Sbjct: 119 MGKPVFAPEKVPF-IAESEALTYLIDVPDYDKVE--IASVSMGNPHAVMLVDN------V 169
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
D + +IGP E H+ FP R N F+++++ +++RV+ERG+G T ACGTGACA VV
Sbjct: 170 DTAAVEKIGPAMESHTRFPERVNVGFMQLVNSETIRLRVFERGSGETTACGTGACAAVVT 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+ G R TV LPGG L I W +E+ V+MTGPAE VF G +
Sbjct: 230 GIRRGLLARDVTVSLPGGQLHISWPDENASVWMTGPAEHVFDGEI 274
>gi|254362348|ref|ZP_04978459.1| diaminopimelate epimerase [Mannheimia haemolytica PHL213]
gi|261491829|ref|ZP_05988408.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261494700|ref|ZP_05991180.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|452744657|ref|ZP_21944499.1| diaminopimelate epimerase [Mannheimia haemolytica serotype 6 str.
H23]
gi|153093932|gb|EDN74855.1| diaminopimelate epimerase [Mannheimia haemolytica PHL213]
gi|261309665|gb|EEY10888.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261312484|gb|EEY13608.1| diaminopimelate epimerase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|452087253|gb|EME03634.1| diaminopimelate epimerase [Mannheimia haemolytica serotype 6 str.
H23]
Length = 274
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/291 (41%), Positives = 173/291 (59%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +T E L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDGV-TQNVYLTEEMIRTLSDRHRGIGFDQLLLVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V +Q+DGKV+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDIHVSTAKGKMVLSLQEDGKVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + S VP + + + ++++EL V C VSMGNPHCV L+
Sbjct: 119 GEPIWEPSQVPFTANKFEKNYILRTELQ------TVLCGVVSMGNPHCV---------LQ 163
Query: 256 VDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A E+GP E H FP R N F+++++ + +K+RV+ERGAG T ACG+GAC
Sbjct: 164 VDDVKTAPVNELGPLLESHERFPERANISFMQVVNRNHVKLRVYERGAGETQACGSGACG 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + + VDLPGG L IEW+ + +YMTG A ++ G + L
Sbjct: 224 TVAVGIMQGLLDNKVQVDLPGGTLIIEWQGVGHPLYMTGDATHIYDGFIKL 274
>gi|77359069|ref|YP_338644.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis TAC125]
gi|123587542|sp|Q3IEW3.1|DAPF_PSEHT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|76873980|emb|CAI85201.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis TAC125]
Length = 276
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/290 (42%), Positives = 167/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
++F K HGLGNDF+++DN + ++ +Q KL DR+FGIG D ++ P D+
Sbjct: 2 LVNFSKMHGLGNDFVVIDNI-TQNVFLSRDQIIKLADRHFGIGFDQLLMVEAPYSPDLDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG+E E CGNG RCFARF+ ++ L K TV T +G + I+ DG+V V+
Sbjct: 61 HYRIFNADGTEVEQCGNGARCFARFV-RMKGLTNKHKITVSTKSGNLTLYIEKDGQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P + S +P + + ++++E VSMGNPHCV L+V
Sbjct: 120 MGHPNFEPSKIPLKATKRELTYIIRTEEHT----VFSGAVSMGNPHCV---------LEV 166
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A++ GP E+H FP R N F+++IS +K+RVWERG TLACGTGACA
Sbjct: 167 DDITTAQVDILGPLLENHERFPQRANIGFMQVISKEHIKLRVWERGVNETLACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+V ++ VDLPGG L I W E + V MTGPAE VF G V L
Sbjct: 227 MVIGFIQNKLISTVQVDLPGGSLQIRWNGEGHPVRMTGPAEHVFDGQVAL 276
>gi|134297259|ref|YP_001120994.1| diaminopimelate epimerase [Burkholderia vietnamiensis G4]
gi|387903597|ref|YP_006333936.1| diaminopimelate epimerase [Burkholderia sp. KJ006]
gi|166224252|sp|A4JIQ6.1|DAPF_BURVG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|134140416|gb|ABO56159.1| diaminopimelate epimerase [Burkholderia vietnamiensis G4]
gi|387578489|gb|AFJ87205.1| Diaminopimelate epimerase [Burkholderia sp. KJ006]
Length = 289
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 129/293 (44%), Positives = 167/293 (56%), Gaps = 14/293 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D + T P +T Q L DR+FGIGAD ++ P V+G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYSHTLPPLTDVQVRALADRHFGIGADQLLVVEKPTVDGADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L K+S V GLI +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVTD-RGLTDKRSVRVQVMKGLITLTMQDNGEVVVDM 121
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + + VP + L D + LDV G V+ VSMGNPH V + +
Sbjct: 122 GAPVFEPAQVPFDASGLDGRTDGNDTLWPLDVGGATRWVSTVSMGNPHAVQV-VDDAEAY 180
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V LAE GP E H+ FP R N F++I+S ++K+RV+ERGAG TLACGTGACA V
Sbjct: 181 PV----LAE-GPLIERHARFPKRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAV 235
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLLN 364
A + G + TV GG L I W +E + M GPA VF G + LN
Sbjct: 236 AAGIRRGLLDTPVTVHTHGGTLTISWDGAHDERAALTMAGPATTVFEGEIELN 288
>gi|345869297|ref|ZP_08821255.1| Diaminopimelate epimerase [Thiorhodococcus drewsii AZ1]
gi|343923220|gb|EGV33912.1| Diaminopimelate epimerase [Thiorhodococcus drewsii AZ1]
Length = 276
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/285 (43%), Positives = 161/285 (56%), Gaps = 15/285 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNST-EPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K GLGNDF++ D + T +P P L DR FG+G D ++ P + TD+
Sbjct: 3 LRFTKMQGLGNDFVVFDAISQTIDP--DPTWIRHLADRRFGVGCDQILLVESPRLPDTDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + L K V T AG I + D +V+VD
Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFVRD-RGLTDKDEIPVGTAAGAIRLYLGPDDQVRVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG PIL+ + +P D EL+VD + V VSMGNPH V V
Sbjct: 120 MGVPILEPAKIPFV----ADTQASTYELEVDDHQLTVGAVSMGNPHAVLLVED------V 169
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
D+ + +GP E H FP R N F++I+ P ++RV+ERGAG TLACGTGACA +V+
Sbjct: 170 DRAPVEHLGPLIEVHPRFPQRVNVGFMQILDPGHARLRVFERGAGETLACGTGACAAMVS 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
L G E R + LPGG L IEW ++MTGPAE VF+G +
Sbjct: 230 GQLRGLLEDRVQIKLPGGTLVIEWSGPGETLWMTGPAESVFHGEI 274
>gi|225575185|ref|ZP_03783795.1| hypothetical protein RUMHYD_03274 [Blautia hydrogenotrophica DSM
10507]
gi|225037593|gb|EEG47839.1| diaminopimelate epimerase [Blautia hydrogenotrophica DSM 10507]
Length = 278
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/292 (43%), Positives = 174/292 (59%), Gaps = 22/292 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAAKLC-DRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG+GND++ V N + ++ P + AK DR+FG+G+DG+I P D
Sbjct: 1 MKFTKMHGIGNDYVYV---NCFQEKVDNPSEVAKFVSDRHFGVGSDGLILIKPS-QIADC 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
M ++N DGS+ MCGNG+RC A+++ + + K + + T +G+ + ++GKV
Sbjct: 57 EMDMYNLDGSQGAMCGNGIRCVAKYVYDY-GIVPKTTLRIATKSGIKELNLTVENGKVSL 115
Query: 194 -KVDMGEPILKASDVPTSLSANKDQS-VVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
+V+MG PIL+AS +P DQS V + V+G + T VSMGNPH V +
Sbjct: 116 VRVNMGSPILEASKIPVV----SDQSQAVNQPIKVNGHTYYFTGVSMGNPHAVVYLDD-- 169
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
VD L++ +IGP FE H VFP R NTEFV++I LKMRVWERG+G TLACGTGAC
Sbjct: 170 ----VDNLDIEKIGPAFEKHPVFPDRVNTEFVKVIDRKTLKMRVWERGSGETLACGTGAC 225
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
AV V+++L TV L GG L I W +N VYMTGPA VF G + L
Sbjct: 226 AVAVSSILNNLTGEEVTVKLLGGDLKIHWDRLENLVYMTGPATTVFDGEITL 277
>gi|254483234|ref|ZP_05096466.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2148]
gi|214036457|gb|EEB77132.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2148]
Length = 276
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/285 (42%), Positives = 162/285 (56%), Gaps = 13/285 (4%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HG GNDFI+VD S ++ P + KL DR FG+G D V I PG D+
Sbjct: 2 LLKFTKMHGAGNDFIVVD-LISQRCKLRPREIRKLADRRFGVGCDQVLIVEPPGSPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E E CGNG RCFARF+ + L K+ +V T G+I ++D+ +V+VD
Sbjct: 61 RYRIFNADGGEVEQCGNGARCFARFVRD-NKLTSKRIISVETACGIIQLRLRDNNQVEVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG PIL+ +P + + L V+ + +SMGNPH V + V
Sbjct: 120 MGAPILEPQKIPF----DAPEEATSYPLQVEENVLEIGALSMGNPHSVC------RVDDV 169
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
D +N+ +GP EHH FP RTN F++I+S +++K+RV+ERG G TLACGTGACA VV
Sbjct: 170 DSINIEHLGPLIEHHPRFPQRTNAGFMQIVSETEIKLRVFERGVGETLACGTGACAAVVY 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+ G TV+L GG L I W V MTGP VF G++
Sbjct: 230 GLSRGWLRDTVTVNLSGGKLSISWAGPGQPVIMTGPTASVFEGTI 274
>gi|406595146|ref|YP_006746276.1| diaminopimelate epimerase [Alteromonas macleodii ATCC 27126]
gi|407682068|ref|YP_006797242.1| diaminopimelate epimerase [Alteromonas macleodii str. 'English
Channel 673']
gi|407685952|ref|YP_006801125.1| diaminopimelate epimerase [Alteromonas macleodii str. 'Balearic Sea
AD45']
gi|406372467|gb|AFS35722.1| diaminopimelate epimerase [Alteromonas macleodii ATCC 27126]
gi|407243679|gb|AFT72865.1| diaminopimelate epimerase [Alteromonas macleodii str. 'English
Channel 673']
gi|407289332|gb|AFT93644.1| diaminopimelate epimerase [Alteromonas macleodii str. 'Balearic Sea
AD45']
Length = 276
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 171/286 (59%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++DN + + E+ +L +RNFGIG D ++ P + D+
Sbjct: 3 VQFSKMHGLGNDFMVIDNV-TQNVFFSKEKIQQLANRNFGIGFDQLLMVEPPYDPEQDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE E CGNG RCFARF+ + + L + V T AG +V ++ DG+V V+M
Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVKQ-KGLINRNKIVVSTKAGKMVLYLEKDGQVTVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G+P + +++P L ANK ++ L V + SMGNPHCV + VD
Sbjct: 121 GKPEFEPANIP--LKANKQENTYI--LRVGESTLFIGSASMGNPHCVM------EVDDVD 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
N+AEIGP E H FP N F++II+ S +K+RV+ERG+G TLACG+GACA V
Sbjct: 171 TANVAEIGPLVEKHERFPEGVNVGFMQIINESHIKLRVFERGSGETLACGSGACAAVAIG 230
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
++G + VDLPGG L I W DN + MTGPAE V+ G + L
Sbjct: 231 QIQGKLGKDVRVDLPGGSLRIRWPGPDNVLKMTGPAEHVYDGHINL 276
>gi|409204086|ref|ZP_11232285.1| diaminopimelate epimerase [Pseudoalteromonas flavipulchra JG1]
Length = 276
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 126/292 (43%), Positives = 168/292 (57%), Gaps = 23/292 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
F++F K HGLGNDF+++DN + ++ +Q KL DR+FGIG D ++ P D+
Sbjct: 2 FINFSKMHGLGNDFVVIDNV-TQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG+E E CGNG RCFARF+ ++ L K V T G I + DG+V V+
Sbjct: 61 HYRIFNADGNEVEQCGNGARCFARFV-RMKGLTNKHKVCVSTKGGNITLYTEKDGQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MG+P +P ANK ++ D + V C VSMGNPH V +
Sbjct: 120 MGKPNFNPQAIP--FRANKQENTYILRAD----EHTVFCSAVSMGNPHGV---------I 164
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
VD + AE+ GP EHH FP + N F+E++S +K+RVWERGAG TLACGTGA
Sbjct: 165 IVDSVETAEVATLGPLLEHHERFPQKANIGFMEVVSREYVKLRVWERGAGETLACGTGAG 224
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A VVA +++G E VDLPGG L + W + V MTGPAE VF G + +
Sbjct: 225 AAVVAGIMQGKLEETVRVDLPGGSLQVRWGGQGQVVKMTGPAEHVFDGQIAI 276
>gi|406835361|ref|ZP_11094955.1| diaminopimelate epimerase [Schlesneria paludicola DSM 18645]
Length = 281
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 133/289 (46%), Positives = 177/289 (61%), Gaps = 23/289 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HG GND++ VD + P+ P A + DR+ G+G DG++ P D M
Sbjct: 1 MRFTKMHGAGNDYVYVDCFHEPVPQNIPATAIAISDRHTGVGGDGMVLICPS-EVADARM 59
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ--DDG---KV 193
R+FN+DGSE EMCGN +RC A+F+ + NL K T+ TG GL+ ++ DG +V
Sbjct: 60 RMFNADGSESEMCGNAIRCVAKFVYD-RNLAKKPELTIETGRGLLTMQLTPGRDGLIEQV 118
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+V+MG+PIL+A+ +PT L N +V LDV G NVTCVSMGNPHCVTF
Sbjct: 119 RVNMGQPILEAAMIPTLLPGNPPANV---PLDVAGQTINVTCVSMGNPHCVTF------- 168
Query: 254 LKVDKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
VD++N + +GP+ E HS FP R N EF++++S S+ MRVWERG+G T+ACGTGA
Sbjct: 169 --VDEVNDDWVLRVGPQIERHSAFPRRVNAEFIQVVSRSEFIMRVWERGSGETMACGTGA 226
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
CA VA + G +R T L GG L +EW + VYMTGPA VF G
Sbjct: 227 CAAAVAGAITGRTDRTVTAHLRGGDLKLEWSPSGD-VYMTGPATEVFSG 274
>gi|34497983|ref|NP_902198.1| diaminopimelate epimerase [Chromobacterium violaceum ATCC 12472]
gi|81655424|sp|Q7NV18.1|DAPF_CHRVO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|34103838|gb|AAQ60199.1| diaminopimelate epimerase [Chromobacterium violaceum ATCC 12472]
Length = 276
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 162/286 (56%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
L F K HGLGNDF+++D T +TPEQ L +R GIG D ++ P G D+
Sbjct: 3 LKFSKMHGLGNDFMVIDGVRQTVS-LTPEQIRLLGNRQLGIGFDQLLLVEPAREAGHDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DG E E CGNG RCFA+F+ + + L GK V T G+I PE DG +VDM
Sbjct: 62 YRIFNNDGGEVEQCGNGARCFAKFVRD-QGLTGKSRIEVETARGVIAPEYLGDGLARVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P + +D+P D + L + + + SMGNPH V + VD
Sbjct: 121 GVPRFRPADLPFL----ADAEALTYSLPLPEGRCEIGIASMGNPHAVQ------RVDDVD 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+AE+GP E H FP R N F++I++ ++++RV+ERGAG TLACGTGACA VV
Sbjct: 171 AAPVAEVGPAIESHPAFPQRVNAGFMQIVNRGEIRLRVYERGAGETLACGTGACAAVVCG 230
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G + R TV GG + IEW E + V MTGPA VF G + L
Sbjct: 231 IRQGLLDARVTVHARGGDIVIEWAGEGSPVIMTGPAVTVFQGEIEL 276
>gi|407698420|ref|YP_006823207.1| diaminopimelate epimerase [Alteromonas macleodii str. 'Black Sea
11']
gi|407247567|gb|AFT76752.1| diaminopimelate epimerase [Alteromonas macleodii str. 'Black Sea
11']
Length = 276
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 171/286 (59%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++DN + + E+ +L +RNFGIG D ++ P + D+
Sbjct: 3 VQFSKMHGLGNDFMVIDNV-TQNVFFSKEKIQQLANRNFGIGFDQLLMVEPPYDPEQDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE E CGNG RCFARF+ + + L + V T AG +V ++ DG+V V+M
Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVKQ-KGLINRNKIVVSTKAGKMVLYLEKDGQVTVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G+P + +++P L ANK ++ L V + SMGNPHCV + VD
Sbjct: 121 GKPEFEPANIP--LKANKQENTYI--LRVGESTLFIGSASMGNPHCVM------EVDDVD 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
N+AEIGP E H FP N F++II+ S +K+RV+ERG+G TLACG+GACA V
Sbjct: 171 TANVAEIGPLVEKHERFPEGVNVGFMQIINESHIKLRVFERGSGETLACGSGACAAVAIG 230
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
++G + VDLPGG L I W DN + MTGPAE V+ G + L
Sbjct: 231 QIQGKLGKDVRVDLPGGTLRIRWPGPDNVLKMTGPAEHVYDGHINL 276
>gi|119469652|ref|ZP_01612521.1| diaminopimelate epimerase [Alteromonadales bacterium TW-7]
gi|119446899|gb|EAW28170.1| diaminopimelate epimerase [Alteromonadales bacterium TW-7]
Length = 276
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/290 (41%), Positives = 167/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
++F K HGLGNDF+++DN + ++ +Q KL DR+FGIG D ++ P D+
Sbjct: 2 LVNFSKMHGLGNDFVVIDNI-TQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG+E E CGNG RCFARF+ ++ L K +V T +G + I+ DG+V V+
Sbjct: 61 HYRIFNADGTEVEQCGNGARCFARFV-RMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P + S +P S + ++++E VSMGNPHCV ++V
Sbjct: 120 MGHPNFEPSKIPLKASKRELTYIIRAEEHT----VFSGAVSMGNPHCV---------IEV 166
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A++ GP E+H FP R N F+++IS +K+RVWERG TLACGTGACA
Sbjct: 167 DDITTAQVDVLGPLLENHERFPQRANIGFMQVISQEHIKLRVWERGVNETLACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+V ++ VDLPGG L I W E + V MTGPAE VF G V L
Sbjct: 227 MVIGHMQSKLSSAVQVDLPGGTLQIRWSGEGHPVRMTGPAEHVFDGQVAL 276
>gi|333381147|ref|ZP_08472829.1| diaminopimelate epimerase [Dysgonomonas gadei ATCC BAA-286]
gi|332830117|gb|EGK02745.1| diaminopimelate epimerase [Dysgonomonas gadei ATCC BAA-286]
Length = 280
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 133/290 (45%), Positives = 183/290 (63%), Gaps = 20/290 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G GND+I + N + + E A +L +R+FGIG+DG++ +P + D+ M
Sbjct: 4 LKFTKMQGAGNDYIYM-NGFTQQIDNPSELAVRLSNRHFGIGSDGLVLILPS-DICDFRM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KVK 194
++FNSDGSE EMCGN RC +++ + L K+ T+ T AG+ ++D KV
Sbjct: 62 QMFNSDGSEAEMCGNASRCVGKYVYD-NGLTDKKEITLETKAGVKYITLKDGDAIARKVT 120
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTF--GTKEGQ 252
VDMGEPIL + +P ++ ++ V++ LD+DG W ++CVSMGNPH V F G K+
Sbjct: 121 VDMGEPILAPTLIPVRVA---EEPVLEYPLDIDGKIWKISCVSMGNPHAVVFMKGIKD-- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
L+L +GPKFE + +FP +TNTEF+E++ + L MRVWERGAG TLACGTGACA
Sbjct: 176 ------LDLPVLGPKFETNPIFPRKTNTEFIEVVDRNTLNMRVWERGAGETLACGTGACA 229
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VAAVL H +R T+ L GG L IEW +NHVYMTG A VF G ++
Sbjct: 230 AAVAAVLNNHCDRDITIHLLGGDLKIEWDVLNNHVYMTGEAVTVFEGELI 279
>gi|95928476|ref|ZP_01311223.1| Diaminopimelate epimerase [Desulfuromonas acetoxidans DSM 684]
gi|95135266|gb|EAT16918.1| Diaminopimelate epimerase [Desulfuromonas acetoxidans DSM 684]
Length = 282
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 122/288 (42%), Positives = 177/288 (61%), Gaps = 20/288 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-AAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F+K HG GND++ VD R PE+ A ++ DR+FG+G+DG+I +P + D
Sbjct: 1 MKFIKMHGAGNDYVYVDGFQQDVHR--PEELAVRISDRHFGVGSDGLILILPS-DCADAR 57
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDD------G 191
MR+FN+DGSE +MCGNG+RC A+++ + ++ G Q T+ T AG++ ++ D
Sbjct: 58 MRMFNADGSEAQMCGNGIRCVAKYLCDQQSDRGSQ-LTIETLAGVLSVDVTADTENPAIS 116
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
+V V+MG+P L+ +P + +DQ++ + E+ V + +CVSMGNPHCV +
Sbjct: 117 QVTVNMGQPRLQRGQIPMT-GPQQDQAL-EVEIRVKNRTFTASCVSMGNPHCVVYVDD-- 172
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
V++ ++A G E+H +FP R N EFVEIIS S+++ R WERGAG TLACGTGA
Sbjct: 173 ----VEQFDVAYWGALLENHPLFPERINVEFVEIISGSEVRQRTWERGAGETLACGTGAS 228
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
AV VA L G +R L GG L +E+ +D V MTGPAE VF G
Sbjct: 229 AVTVAGFLTGRTQRTIRNHLRGGVLTLEYC-DDETVMMTGPAEQVFTG 275
>gi|33861445|ref|NP_893006.1| diaminopimelate epimerase [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|33634022|emb|CAE19347.1| Diaminopimelate epimerase [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 286
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 122/292 (41%), Positives = 170/292 (58%), Gaps = 21/292 (7%)
Query: 81 FVKYHGLGNDFILVDNRNST-EPRITPEQA---AKLCDRNFGIGADGVIFAMPGVNGTDY 136
F KYHG GNDFI++D+RNS + ++ LCDR FGIG DGVIF +
Sbjct: 6 FEKYHGNGNDFIIIDSRNSNIYKKFLSDKKIDIKNLCDRQFGIGGDGVIFILEPDRNNYA 65
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV-----HTGAGLIVPEIQDDG 191
M I+NSDGSE +MCGNG+RC ++ L N N K S++V T AG+ + + ++G
Sbjct: 66 KMIIYNSDGSEAQMCGNGIRCLVQY---LHNFN-KGSYSVSEYRIETKAGIKIAQ-YNNG 120
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
++ V MG+PIL+ +PT + K S+ + V MGNPH + F
Sbjct: 121 EITVKMGKPILETKSIPTKIDT-KINSIPSCLFKEKNFEQQGYAVGMGNPHLIFFLQD-- 177
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+ K++L+ +GP FE H +FP +TN F +II+ + +RVWERGAGATLACGTGAC
Sbjct: 178 ----ITKISLSLLGPVFEKHELFPEKTNVHFSQIINRDNINVRVWERGAGATLACGTGAC 233
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
AV VAA G + ++LPGG L I W ++ + MTG A+ VF G+ +L
Sbjct: 234 AVHVAAYKLGLCNSKTVINLPGGNLIINWSRSEDEILMTGNAKKVFSGTYIL 285
>gi|332139611|ref|YP_004425349.1| diaminopimelate epimerase [Alteromonas macleodii str. 'Deep
ecotype']
gi|410859853|ref|YP_006975087.1| diaminopimelate epimerase [Alteromonas macleodii AltDE1]
gi|327549633|gb|AEA96351.1| diaminopimelate epimerase [Alteromonas macleodii str. 'Deep
ecotype']
gi|410817115|gb|AFV83732.1| diaminopimelate epimerase [Alteromonas macleodii AltDE1]
Length = 276
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 170/286 (59%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++DN + + E+ +L DRNFGIG D ++ P + D+
Sbjct: 3 VQFSKMHGLGNDFMVIDNV-TQNVFFSKEKIQQLADRNFGIGFDQLLMVEPPYDPEQDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE E CGNG RCFARF+ + + L + V T AG +V ++ DG+V V+M
Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVKQ-KGLINRNKIVVSTKAGKMVLYLEKDGQVTVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G+P + +++P L ANK ++ L V + SMGNPHCV + VD
Sbjct: 121 GKPEFEPANIP--LKANKQENTYI--LRVGESTLFIGAASMGNPHCVM------EVDDVD 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
N+AEIGP E H F N F++II+ S +K+RV+ERG+G TLACG+GACA V
Sbjct: 171 TANVAEIGPLVEKHERFSEGVNVGFMQIINDSHIKLRVFERGSGETLACGSGACAAVAIG 230
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
++G + VDLPGG L I W DN + MTGPAE V+ G + L
Sbjct: 231 QIQGKLSKDVRVDLPGGSLRIRWPGPDNVLKMTGPAEHVYDGHINL 276
>gi|387126535|ref|YP_006295140.1| diaminopimelate epimerase [Methylophaga sp. JAM1]
gi|386273597|gb|AFI83495.1| Diaminopimelate epimerase [Methylophaga sp. JAM1]
Length = 282
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 170/288 (59%), Gaps = 18/288 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAM-PGVNGTDY 136
L F K HGLGNDF+++D N + ++T EQ + DR+ GIG D ++ + D+
Sbjct: 1 MLKFSKMHGLGNDFVVIDAINQS-VQLTTEQIRFMADRHIGIGCDQLLLVENSDLKDVDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E CGNG RCFAR++ + L K S V T +G+I P +Q DG+V VD
Sbjct: 60 RYRIFNADGGEVSQCGNGARCFARYVRD-NGLTTKDSIAVETASGVIYPILQADGQVCVD 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG+P VP +++ + ++ E G + + +SMGNPH V L V
Sbjct: 119 MGKPRFSPEQVPFNVAEQSNTYMLAVE---PGRQVEIAALSMGNPHAV---------LLV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A E+GPK E+H FP R N F++++ +K+RV+ERG+ T ACGTGACA
Sbjct: 167 DDVTTAPVGELGPKIENHQQFPERVNVGFMQLVDHEHIKLRVYERGSAETTACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VV+ + G R+ +V LPGG L+I W +E++ V+MTGPA+ VF G +
Sbjct: 227 VVSGIRRGILGRQVSVLLPGGTLEISWPDENSSVWMTGPAQHVFDGEI 274
>gi|51891372|ref|YP_074063.1| diaminopimelate epimerase [Symbiobacterium thermophilum IAM 14863]
gi|51855061|dbj|BAD39219.1| diaminopimelate epimerase [Symbiobacterium thermophilum IAM 14863]
Length = 272
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 125/293 (42%), Positives = 164/293 (55%), Gaps = 32/293 (10%)
Query: 78 FLHFVKYHGLGNDFILVDN--RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GT 134
+ F K G GND+I V+N E R+ P A L DR+FG+GADG+I +P G
Sbjct: 1 MVRFTKMEGAGNDYIYVNNLVEQVPEERL-PALARALSDRHFGVGADGLIVILPPAEPGY 59
Query: 135 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDD---- 190
D+ R+FN+DGSE EMCGNG+RCFAR+ E L ++ V T AG +VPE+ D
Sbjct: 60 DFRFRMFNADGSEGEMCGNGMRCFARYCYE-RGLTARRRMRVQTAAGCVVPEVLVDDAGS 118
Query: 191 -GKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTK 249
V+VD+G P + + +G ++ VT V G PH V F
Sbjct: 119 FAGVRVDLGPPRILGD----------------RRIAAEGREYPVTVVDTGVPHIVIFVDD 162
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
VD ++LA++GP+ E H FPAR N F E P++L+ R WERG+G TLACGTG
Sbjct: 163 ------VDAVDLAKVGPQLERHPDFPARVNVNFAEAQGPAELRARTWERGSGLTLACGTG 216
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
A AV+VAA L+G R V +PGG L +EW E HV++TGPAE V G L
Sbjct: 217 ASAVLVAACLKGRTGRAARVRMPGGDLQVEWDEATGHVFLTGPAEFVCDGVFL 269
>gi|342905081|ref|ZP_08726873.1| Diaminopimelate epimerase [Haemophilus haemolyticus M21621]
gi|341951911|gb|EGT78460.1| Diaminopimelate epimerase [Haemophilus haemolyticus M21621]
Length = 274
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 169/288 (58%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + TPE +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTPETIQRLADRHRGIGFDQLLLVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E H FP R N F++II+ +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IKTANVEQLGPLLESHERFPERVNAGFMQIINKDHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G R VDLPGG L IEW + +YMTG A V+ G + L
Sbjct: 227 VGIMQGLLNNRVQVDLPGGSLIIEWNGVGHPLYMTGEATHVYDGFITL 274
>gi|266621394|ref|ZP_06114329.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479]
gi|288866946|gb|EFC99244.1| diaminopimelate epimerase [Clostridium hathewayi DSM 13479]
Length = 269
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 123/287 (42%), Positives = 166/287 (57%), Gaps = 29/287 (10%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-AAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K G GND++ ++ T R PE+ A K+ DR+FGIG+DG+I P D
Sbjct: 1 MKFTKMQGTGNDYVYINCFEETVER--PEELAVKVSDRHFGIGSDGLILICPS-GQADCR 57
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK----V 193
M++FN+DGSE EMCGNG+RC +F+ + ++ K+ F V T AG+ ++ D+G +
Sbjct: 58 MKMFNADGSESEMCGNGIRCVGKFVYD-HHIVEKKEFDVETKAGIKHLKVTDEGGKAALI 116
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG P + DVP + VDG + +SMGNPH + + +
Sbjct: 117 TVDMGIPEV-TGDVPEPIV-------------VDGRSYEFIGISMGNPHAIYYMDE---- 158
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+D L+L IGP FE H FP RTN+EF++++ S L+MRVWERG+G T ACGTGA A
Sbjct: 159 --IDDLDLEAIGPAFETHERFPERTNSEFIQVVDRSHLRMRVWERGSGETWACGTGATAS 216
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
VA+VL G E V+L GG L I W E HVYMTGPA VF G
Sbjct: 217 AVASVLSGRTENTVEVELKGGTLQITWDRESGHVYMTGPAVEVFQGE 263
>gi|161526249|ref|YP_001581261.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616]
gi|160343678|gb|ABX16764.1| Diaminopimelate epimerase [Burkholderia multivorans ATCC 17616]
Length = 387
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 179/330 (54%), Gaps = 20/330 (6%)
Query: 44 LKVPSFRVSASSMSSIHAPESASRTSFLDRR---ESGFLHFVKYHGLGNDFILVDNRNST 100
L++ S R +A S+ P A R LDR + L F K HG GNDF+++D + T
Sbjct: 66 LRLRSARRTAPRDSARRRPRGADR---LDRHGIPDPVKLSFTKMHGAGNDFVVLDGYSRT 122
Query: 101 EPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFA 159
P +T Q L R+FGIGAD ++ P V+G D+ RIFN DG E E CGNG RCF
Sbjct: 123 LPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFV 182
Query: 160 RFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSV 219
+F+++ L K+S V GLI +QD+G+V VDMG P+ VP S +S
Sbjct: 183 KFVSD-RGLTDKRSVRVQVMKGLITLTMQDNGEVVVDMGAPVFAPEQVPFDASGLDGRSE 241
Query: 220 VKS---ELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPA 276
+ L+V G ++ VSMGNPH V + + E GP E H+ FP
Sbjct: 242 GRDTLWPLEVGGRTRWISTVSMGNPHAVQVVDD------AEAYPVLEEGPLIERHARFPQ 295
Query: 277 RTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPL 336
R N F++I+S S++K+RV+ERGAG TLACGTGACA V A + G + TV GG L
Sbjct: 296 RVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAVAAGIRRGLLDSPVTVHTHGGTL 355
Query: 337 DIEW---KEEDNHVYMTGPAEVVFYGSVLL 363
I W ++E + M GPA VF G + L
Sbjct: 356 TIGWDGARDESAALMMAGPAATVFEGEIDL 385
>gi|89091914|ref|ZP_01164869.1| diaminopimelate epimerase [Neptuniibacter caesariensis]
gi|89083649|gb|EAR62866.1| diaminopimelate epimerase [Oceanospirillum sp. MED92]
Length = 280
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 120/287 (41%), Positives = 163/287 (56%), Gaps = 9/287 (3%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF+++D + ++TP+ KL DRNFG+G D ++ P D+
Sbjct: 2 LVRFTKMHGLGNDFMVLD-LVTQRVKVTPKLVKKLGDRNFGVGFDQLLIVEPPSEPDIDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN DGSE E CGNG RCFA+F+ + + L GK V T G + +I D +V+V+
Sbjct: 61 RYRIFNQDGSEVENCGNGARCFAKFVRD-KRLTGKSEVVVQTANGQMTLKIHPDKRVEVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG PIL DVP + L + ++ +SMGNPH V +N V
Sbjct: 120 MGAPILAPVDVPFQADQKATTYAIDVPLSQGDQQVELSAISMGNPHGVLI-VDSTENAPV 178
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
+ L GP E H FPA+ N F+++IS +++ +RV+ERG G T+ACGTGACA VVA
Sbjct: 179 ETL-----GPALEAHERFPAKANIGFMQVISRNEVNLRVFERGVGETIACGTGACAAVVA 233
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
L G + TV LPGG L+IEW E V MTGPA V+ G + +
Sbjct: 234 GKLRGVLDMPVTVHLPGGDLEIEWHGEGQPVIMTGPATTVYEGQIFV 280
>gi|359440182|ref|ZP_09230106.1| diaminopimelate epimerase [Pseudoalteromonas sp. BSi20429]
gi|392535085|ref|ZP_10282222.1| diaminopimelate epimerase [Pseudoalteromonas arctica A 37-1-2]
gi|358038017|dbj|GAA66355.1| diaminopimelate epimerase [Pseudoalteromonas sp. BSi20429]
Length = 276
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 167/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
++F K HGLGNDF+++DN + ++ +Q KL DR+FGIG D ++ P D+
Sbjct: 2 LVNFSKMHGLGNDFVVIDNI-TQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG+E E CGNG RCFARF+ ++ L K TV T +G + I+ DG+V V+
Sbjct: 61 HYRIFNADGTEVEQCGNGARCFARFV-RMKGLTNKHKITVSTKSGNLTLYIEKDGQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P + S +P S + ++++E VSMGNPHCV L+V
Sbjct: 120 MGHPNFEPSKIPLKASKRELTYIIRTEEHT----VFSGAVSMGNPHCV---------LEV 166
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A++ GP E+H FP + N F++++S +K+RVWERG TLACGTGACA
Sbjct: 167 DDVTTAQVDILGPLLENHERFPQKANIGFMQVVSHEHIKLRVWERGVNETLACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+V ++ VDLPGG L + W E + V MTGPAE VF G V L
Sbjct: 227 MVIGHMQNKLSTTVQVDLPGGSLQVRWSGEGHPVRMTGPAEHVFDGQVAL 276
>gi|170734435|ref|YP_001766382.1| diaminopimelate epimerase [Burkholderia cenocepacia MC0-3]
gi|169817677|gb|ACA92260.1| Diaminopimelate epimerase [Burkholderia cenocepacia MC0-3]
Length = 309
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 166/293 (56%), Gaps = 14/293 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D + P +T Q L +R+FGIGAD ++ P V+G D+
Sbjct: 23 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFK 82
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+++ L ++S V GLI +QD+G+V VDM
Sbjct: 83 YRIFNCDGGEVEHCGNGARCFVKFVSD-RGLTDRRSVRVQVMKGLITLTLQDNGEVVVDM 141
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + VP + L ++ + LDV G ++ VSMGNPH V
Sbjct: 142 GAPVFAPAQVPFEPSGLDGRQEGNDTLWPLDVGGATRWISTVSMGNPHAVQVVDD----- 196
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V+ + E GP E H+ FP R N F++I+S ++K+RV+ERGAG TLACGTGACA V
Sbjct: 197 -VEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAV 255
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLLN 364
A + G + TV GG L I W ++E + M GPA VF G + LN
Sbjct: 256 AAGIRRGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDLN 308
>gi|220933237|ref|YP_002512136.1| Diaminopimelate epimerase [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|254767121|sp|B8GT89.1|DAPF_THISH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|219994547|gb|ACL71149.1| Diaminopimelate epimerase [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 278
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 121/289 (41%), Positives = 168/289 (58%), Gaps = 21/289 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN--GTDY 136
+ F K HGLGNDF+++D + ++P+Q L R FG+G D V+ + D+
Sbjct: 3 IQFSKMHGLGNDFVVIDAIHQPV-DLSPDQVRLLAHRRFGVGCDQVLLVERPSDPAAADF 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG+E E CGNG RCFA F+ E L K V T AG+I ++Q DG+V VD
Sbjct: 62 RYRIFNADGNEVEQCGNGARCFAVFVRE-RGLTAKDHIPVETAAGIIHLQVQPDGQVTVD 120
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P LK +P + ++ L+V+G + + VSMGNPH V L+V
Sbjct: 121 MGPPRLKPWQIPF----EAESAMTSYPLEVEGETYEIGAVSMGNPHAV---------LRV 167
Query: 257 DKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + +A +GP E H FP N F++++SP ++++RV+ERG G TLACGTGACA
Sbjct: 168 DNVQTAPVARLGPLIEAHPRFPRHVNVGFMQVVSPGEIRLRVYERGVGETLACGTGACAA 227
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWK-EEDNHVYMTGPAEVVFYGSV 361
VV+ ++G + VDLPGG L I W +E+ V MTGPA VF GS+
Sbjct: 228 VVSGRIQGLLDETVAVDLPGGRLVINWAGQEEAPVMMTGPATQVFTGSI 276
>gi|326793296|ref|YP_004311117.1| diaminopimelate epimerase [Clostridium lentocellum DSM 5427]
gi|326544060|gb|ADZ85919.1| diaminopimelate epimerase [Clostridium lentocellum DSM 5427]
Length = 283
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 126/291 (43%), Positives = 176/291 (60%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNST--EPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
++F K HG+GND++ VD T +P E + DR+FGIG+DG++ +P D+
Sbjct: 3 INFTKMHGIGNDYVYVDGFKQTLKDPNAFSEF---ISDRHFGIGSDGLVIILPS-EIADF 58
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE +MCGN RC +F+ E K++ ++ T +G+ + +DGKV
Sbjct: 59 RMRMFNADGSEGKMCGNATRCIGKFVYET-GYTDKKNISLETLSGIKYLTLTVEDGKVVY 117
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
+VDMG+ IL D+P + ++ + + + +D + TCVSMGNPH V +
Sbjct: 118 VEVDMGKAILSPQDIPV---ISDQETFINTPISIDNEIYYGTCVSMGNPHVVVYCED--- 171
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD L+L IGPKFE + +FP R NTEFV+II S +KMRVWERG+G T ACGTGACA
Sbjct: 172 ---VDLLSLESIGPKFEFNPLFPERINTEFVQIIDDSTVKMRVWERGSGETWACGTGACA 228
Query: 313 VVVAAVLEGHAE--RRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V V+ VL G+ + TV L GG L I +K ED V M GPA VF G++
Sbjct: 229 VAVSCVLNGYCKINEEITVKLRGGDLKITYK-EDGTVLMKGPATKVFDGTI 278
>gi|420157526|ref|ZP_14664359.1| diaminopimelate epimerase [Clostridium sp. MSTE9]
gi|394756082|gb|EJF39221.1| diaminopimelate epimerase [Clostridium sp. MSTE9]
Length = 277
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 128/290 (44%), Positives = 173/290 (59%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQA--AKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG+GND++ N E +T A +L DR+FG+G+DG+I P + D
Sbjct: 1 MKFTKMHGIGNDYLYF---NCFEEPVTDPAALSIRLSDRHFGVGSDGIILIGPS-DKADC 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAG-----LIVPEIQDDG 191
+M I+N+DGS MCGNG+RC ++ E + K++ TV T +G L V E
Sbjct: 57 SMDIYNADGSRAMMCGNGIRCVGKYAYE-RGIAKKKTLTVDTQSGVKTLFLTVDENDHVT 115
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
V V+MG+P L A +PT + V+ +++ G ++ VTCVSMGNPHCV F
Sbjct: 116 SVTVNMGKPELSAPKIPTLFET---EQVIDHPVEIAGKEYRVTCVSMGNPHCVVFVDD-- 170
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
VD + L+ IGP FE H +FP R NTEFV++I +++KMRVWERG+G T ACGTGAC
Sbjct: 171 ----VDAIPLSSIGPSFEFHHMFPQRVNTEFVQMIGENEVKMRVWERGSGETWACGTGAC 226
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
AV VA L G R+ V L GG L+I W EE + V+M GPAE VF G +
Sbjct: 227 AVAVACALGGKTGRQVLVHLKGGDLNIRWDEETDEVFMQGPAEFVFDGQI 276
>gi|315125205|ref|YP_004067208.1| diaminopimelate epimerase [Pseudoalteromonas sp. SM9913]
gi|315013718|gb|ADT67056.1| diaminopimelate epimerase [Pseudoalteromonas sp. SM9913]
Length = 276
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 166/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
++F K HGLGNDF+++DN + ++ +Q KL DR+FGIG D ++ P D+
Sbjct: 2 LVNFSKMHGLGNDFVVIDNI-TQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E E CGNG RCFARF+ ++ L K +V T +G + I+ DG+V V+
Sbjct: 61 HYRIFNADGHEVEQCGNGARCFARFV-RMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P + S +P + + ++++E VSMGNPHCV ++V
Sbjct: 120 MGHPNFEPSKIPLKATKRELTYIIRAEEHT----VFSGAVSMGNPHCV---------MEV 166
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A++ GP E+H FP R N F+++IS +K+RVWERG TLACGTGACA
Sbjct: 167 DDIETAQVSTLGPLLENHERFPQRANIGFMQVISQEHIKLRVWERGVSETLACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+V ++ VDLPGG L + W E + V MTGPAE VF G V L
Sbjct: 227 MVIGFIQNKLTSTVQVDLPGGSLQVRWSGEGHPVRMTGPAEHVFDGQVAL 276
>gi|402565158|ref|YP_006614503.1| diaminopimelate epimerase [Burkholderia cepacia GG4]
gi|402246355|gb|AFQ46809.1| diaminopimelate epimerase [Burkholderia cepacia GG4]
Length = 309
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 165/293 (56%), Gaps = 14/293 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D + P +T Q L +R+FGIGAD ++ P V+G D+
Sbjct: 23 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFK 82
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+++ L GK+S V GLI +QD+G+V VDM
Sbjct: 83 YRIFNCDGGEVEHCGNGARCFVKFVSD-RGLTGKRSVRVQVMKGLITLTMQDNGEVVVDM 141
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + VP L + + LDV G ++ VSMGNPH V
Sbjct: 142 GAPVFAPAQVPFDAAGLDGQTEGNDTLWPLDVGGHTRWISTVSMGNPHAVQIVDD----- 196
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ + E GP E H+ FP R N F++I+S +++K+RV+ERGAG TLACGTGACA V
Sbjct: 197 -AEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRNEVKLRVYERGAGETLACGTGACAAV 255
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLLN 364
A + G + TV GG L I W ++E + M GPA VF G + LN
Sbjct: 256 AAGIRRGLLDTPVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDLN 308
>gi|359447458|ref|ZP_09237054.1| diaminopimelate epimerase [Pseudoalteromonas sp. BSi20439]
gi|358038739|dbj|GAA73303.1| diaminopimelate epimerase [Pseudoalteromonas sp. BSi20439]
Length = 276
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 166/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
++F K HGLGNDF+++DN + ++ +Q KL DR+FGIG D ++ P D+
Sbjct: 2 LVNFSKMHGLGNDFVVIDNI-TQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E E CGNG RCFARF+ ++ L K +V T +G + I+ DG+V V+
Sbjct: 61 HYRIFNADGHEVEQCGNGARCFARFV-RMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P + S +P + + ++++E VSMGNPHCV ++V
Sbjct: 120 MGHPNFEPSKIPLKATKRELTYIIRAEEHT----VFSGAVSMGNPHCV---------MEV 166
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A++ GP E+H FP R N F+++IS +K+RVWERG TLACGTGACA
Sbjct: 167 DDIETAQVDTLGPLLENHERFPQRANIGFMQVISQEHIKLRVWERGVSETLACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+V ++ VDLPGG L + W E + V MTGPAE VF G V L
Sbjct: 227 MVIGFIQNKLTSTVQVDLPGGSLQVRWSGEGHPVRMTGPAEHVFDGQVAL 276
>gi|157413339|ref|YP_001484205.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9215]
gi|157387914|gb|ABV50619.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9215]
Length = 286
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 121/292 (41%), Positives = 172/292 (58%), Gaps = 17/292 (5%)
Query: 79 LHFVKYHGLGNDFILVDNR------NSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN 132
+ F KY G GNDF++ D+R N +I K+C+R FGIGADGVIF
Sbjct: 4 ITFEKYQGNGNDFVVFDSRGNDIYKNYKTNKIF--DIKKICNRQFGIGADGVIFIEEPNE 61
Query: 133 GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGK-QSFTVHTGAGLIVPEIQDDG 191
M IFNSDGSE +MCGNG+RC ++ +++N K + + + T AGL + + +D
Sbjct: 62 DNYAKMIIFNSDGSEAQMCGNGIRCLVEYLHVNDSINIKNKEYKIETKAGLKIAKYIND- 120
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
K+ V MG PIL++ ++PT++ K S+ E K+ V MGNPH + F
Sbjct: 121 KITVKMGVPILESQNIPTTIEK-KINSIPSHEFIEKNFKYIGYAVGMGNPHLIFFVQD-- 177
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
++ +NL+ +GP FE + +FP +TN F +I++ +K++VWERGAG TLACGTGAC
Sbjct: 178 ----IESINLSRLGPIFEKNELFPEKTNVHFCQIVNRDNIKVKVWERGAGPTLACGTGAC 233
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A+ VAA G V LPGG L I+W ++D V MTG A+ VF GS+L+
Sbjct: 234 AIHVAAYKLGLCNSETIVTLPGGNLKIDWSKDDCEVMMTGNAKRVFSGSILV 285
>gi|387769298|ref|ZP_10125562.1| diaminopimelate epimerase [Pasteurella bettyae CCUG 2042]
gi|386906931|gb|EIJ71652.1| diaminopimelate epimerase [Pasteurella bettyae CCUG 2042]
Length = 274
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 177/289 (61%), Gaps = 19/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAA-KLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD T+ PE+ KL DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFVVVDA--VTQNVYFPEELIRKLADRHRGIGFDQMLIVEPPYDPDLDF 58
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ ++ L K+ V T G +V +++DG V+V+
Sbjct: 59 HYRIFNADGSEVAQCGNGARCFARFVT-IKGLTDKKDIAVSTSNGRMVLTVKEDGMVRVN 117
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEPI + + +P + + + ++++++ V C VSMGNPHC T ++
Sbjct: 118 MGEPIWEPAKIPFTANKFEKNYILRTDIQ------TVLCGAVSMGNPHC-TLVVED---- 166
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+D N+AE+GP E H FP R N F++I++P +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 -IDTANVAELGPLLESHERFPERVNAGFMQIMNPGHIKLRVYERGAGETQACGSGACAAV 225
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G +++ VDL GG L IEW+ E + +YMTG A V+ G + L
Sbjct: 226 AIGIMQGLLDKKVQVDLVGGSLLIEWEGEGHPLYMTGEATHVYDGFIKL 274
>gi|221134093|ref|ZP_03560398.1| diaminopimelate epimerase [Glaciecola sp. HTCC2999]
Length = 276
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/287 (41%), Positives = 166/287 (57%), Gaps = 13/287 (4%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PE+ +L DRNFG+G D ++ P + D+
Sbjct: 2 LVEFTKMHGLGNDFMVVDCI-TQNIYFSPERIQQLADRNFGVGFDQLLLVEPPYDPDQDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + +NL K +V T AG I+ ++ DG+V V+
Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFV-KYKNLTHKTKISVSTKAGKIMLYLEKDGQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P DVP ++ +++ E D + VS+GNPHCV +
Sbjct: 120 MGRPRFAPDDVPMKAQKQENTYIIR-EADQ---TFFCGAVSLGNPHCVMVVDD------I 169
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
D ++ +G E H FP + N F++II + +K+RV+ERG G TLACG+GACA V
Sbjct: 170 DTYDVLGVGALLESHERFPQKVNVGFMQIIDENNIKLRVFERGVGETLACGSGACAAVAI 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+G V LPGGPL I W+ +D+ + MTGPAE VF G ++L
Sbjct: 230 GQQQGKLGTEVNVTLPGGPLTIRWQGDDHTIKMTGPAEHVFDGKIVL 276
>gi|150006487|ref|YP_001301231.1| diaminopimelate epimerase [Bacteroides vulgatus ATCC 8482]
gi|294775411|ref|ZP_06740926.1| diaminopimelate epimerase [Bacteroides vulgatus PC510]
gi|166224242|sp|A6L7E5.1|DAPF_BACV8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|149934911|gb|ABR41609.1| diaminopimelate epimerase [Bacteroides vulgatus ATCC 8482]
gi|294450731|gb|EFG19216.1| diaminopimelate epimerase [Bacteroides vulgatus PC510]
Length = 280
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 126/294 (42%), Positives = 168/294 (57%), Gaps = 31/294 (10%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAA-KLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K G GND+I V+ +S P P +AA K + GIGADG++ + D++
Sbjct: 5 IKFTKMQGTGNDYIYVNTLSS--PLQDPIKAARKWSTYHTGIGADGLVL-IGASEKADFS 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAE----------LENLNGKQSFTVHTGAGLIVPEI 187
MRIFN+DGSE MCGN RC +++ E LE L+G + +HTG G++
Sbjct: 62 MRIFNADGSEAMMCGNASRCIGKYVYEKGLTDKEVITLETLSGIKILKLHTGNGVV---- 117
Query: 188 QDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFG 247
V VDMG P+L P + A K ++ + DG ++ T V MGNPH V F
Sbjct: 118 ---KDVTVDMGTPLLSN---PGQI-ATKTGGMLAETIPADGKEYKGTFVCMGNPHVVIFV 170
Query: 248 TKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACG 307
+ +++L +GPK E+H +FP RTN EFVEI+ L+MRVWERG+G T+ACG
Sbjct: 171 DD------IKEVDLPAVGPKLENHPLFPERTNVEFVEILPDQSLRMRVWERGSGITMACG 224
Query: 308 TGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
TGACA VAAVL A R+ V + GG L I W E+D HVYMTGPA VF G +
Sbjct: 225 TGACATAVAAVLNHKAGRKSWVRMDGGDLHIHWNEKDGHVYMTGPAGKVFEGEI 278
>gi|417842372|ref|ZP_12488464.1| Diaminopimelate epimerase [Haemophilus haemolyticus M19501]
gi|341947285|gb|EGT73949.1| Diaminopimelate epimerase [Haemophilus haemolyticus M19501]
Length = 274
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 170/288 (59%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + T E +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTSETIQRLADRHRGIGFDQLLLVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K++ V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKNIAVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E+H FP R N F++II+ +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IKTANVEQLGPLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G R VDLPGG L IEW + +YMTG A V+ G + L
Sbjct: 227 VGIMQGLLSNRVQVDLPGGSLIIEWNGVGHPLYMTGEATHVYDGFITL 274
>gi|114330524|ref|YP_746746.1| diaminopimelate epimerase [Nitrosomonas eutropha C91]
gi|122314470|sp|Q0AIP0.1|DAPF_NITEC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|114307538|gb|ABI58781.1| diaminopimelate epimerase [Nitrosomonas eutropha C91]
Length = 278
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 168/290 (57%), Gaps = 19/290 (6%)
Query: 79 LHFVKYHGLGNDFILVD--NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
L F K HGLGNDFI+++ N+ ++ + P +L DR+FGIG D ++ G D+
Sbjct: 3 LQFTKMHGLGNDFIVINAINQPASLTFLDPATIRRLADRHFGIGFDQLLIVEQAREGGDF 62
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E E CGNG RCFARF+ + NL K + V T G+I P I+++G+V V+
Sbjct: 63 RYRIFNADGGEVEQCGNGARCFARFVRDY-NLTDKNTIRVETARGIITPTIENNGEVSVN 121
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P + +++P + Q + L + ++ VS+GNPH V +
Sbjct: 122 MGVPQFEPAEIPFQAA----QRMPVYPLQIGDKTIEISAVSIGNPHAVQI---------I 168
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
++LA + GPK E H +FP R N F++II + +++RV+ERG G TLACGTGACA
Sbjct: 169 PDIDLAPVTTEGPKIEAHPLFPERVNAGFMQIIDRAHIRLRVFERGTGETLACGTGACAA 228
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VV +L G + V + GG L I W +D V+MTGPA VF G++ L
Sbjct: 229 VVCGILRGLLDTTVQVAMHGGNLQIRWDGKDKPVWMTGPAITVFEGTIDL 278
>gi|261855002|ref|YP_003262285.1| diaminopimelate epimerase [Halothiobacillus neapolitanus c2]
gi|261835471|gb|ACX95238.1| diaminopimelate epimerase [Halothiobacillus neapolitanus c2]
Length = 281
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 169/286 (59%), Gaps = 15/286 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYT 137
+HF K HGLGNDF+++D N + PEQ + +R+FGIG D ++ P T +T
Sbjct: 3 IHFTKMHGLGNDFMVIDAINQA-IELNPEQIRQWANRHFGIGFDQLLIVEPPKTADTLFT 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DG E E CGNG RCFAR++ + + L ++ V T +G IV I D G V VDM
Sbjct: 62 YRIFNADGGEVEQCGNGARCFARYVYD-KGLTTEKEIPVGTASGRIVLHINDSGDVTVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P+ +++P + + LD DG +W + VSMGNPH V E +N VD
Sbjct: 121 GRPMFTPTNIP--FITECEATSYPLTLD-DGSEWVIDAVSMGNPHAVL----EVEN--VD 171
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++ +GP EHH FP R N F++I+ +++RV+ERG+G TLACGTGACA VV+
Sbjct: 172 TAPVSHLGPMIEHHRQFPNRVNVGFMQIVDRQHIRLRVFERGSGETLACGTGACAAVVSG 231
Query: 318 VLEGHAERRCTVDLPGGPLDIEW--KEEDNHVYMTGPAEVVFYGSV 361
+ + C VD+ GG L + W K +D+ V MTGPA+ VF G +
Sbjct: 232 IRRNRLDSPCLVDVRGGRLSVAWTGKTQDS-VLMTGPAQSVFEGQI 276
>gi|359454038|ref|ZP_09243333.1| diaminopimelate epimerase [Pseudoalteromonas sp. BSi20495]
gi|414071097|ref|ZP_11407072.1| diaminopimelate epimerase [Pseudoalteromonas sp. Bsw20308]
gi|358048989|dbj|GAA79582.1| diaminopimelate epimerase [Pseudoalteromonas sp. BSi20495]
gi|410806485|gb|EKS12476.1| diaminopimelate epimerase [Pseudoalteromonas sp. Bsw20308]
Length = 276
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 167/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
++F K HGLGNDF+++DN + ++ +Q KL DR+FGIG D ++ P D+
Sbjct: 2 LVNFSKMHGLGNDFVVIDNI-TQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG+E E CGNG RCFARF+ ++ L K +V T +G + I+ DG+V V+
Sbjct: 61 HYRIFNADGTEVEQCGNGARCFARFV-RMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P + S +P S + +++++ VSMGNPHCV L+V
Sbjct: 120 MGHPNFEPSKIPLKASKRELTYIIRTQEHT----VFSGAVSMGNPHCV---------LEV 166
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A++ GP E+H FP + N F++++S +K+RVWERG TLACGTGACA
Sbjct: 167 DDITTAQVDILGPLLENHERFPQKANIGFMQVVSQEHIKLRVWERGVNETLACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+V ++ VDLPGG L + W E + V MTGPAE VF G V L
Sbjct: 227 MVIGHIQNKLSTTVQVDLPGGSLQVRWSGEGHPVRMTGPAEHVFDGQVAL 276
>gi|307248575|ref|ZP_07530590.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
gi|306854925|gb|EFM87113.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
Length = 279
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 175/291 (60%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++D + +T E KL DR+ G+G D ++ P + D+
Sbjct: 6 MQFSKMHGLGNDFMVIDGV-TQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFH 64
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T G +V ++D+ KV+V+M
Sbjct: 65 YRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNM 123
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + VP + + + +++++L V C VSMGNPHCV L+
Sbjct: 124 GEPIWEPAQVPFTANKFEKNYILRTDLQT------VLCGVVSMGNPHCV---------LQ 168
Query: 256 VDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ +NLA E+GP E+H FP R N F+++++ + +K+RV+ERGAG T ACG+GAC
Sbjct: 169 VEDINLAPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACG 228
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ + +YMTG A ++ G + L
Sbjct: 229 AVAVGIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279
>gi|254246906|ref|ZP_04940227.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184]
gi|124871682|gb|EAY63398.1| Diaminopimelate epimerase [Burkholderia cenocepacia PC184]
Length = 309
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 165/293 (56%), Gaps = 14/293 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D + P +T Q L +R+FGIGAD ++ P V+G D+
Sbjct: 23 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFK 82
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+++ L ++S V GLI +QD+G+V VDM
Sbjct: 83 YRIFNCDGGEVEHCGNGARCFVKFVSD-RGLTDQRSVRVQVMKGLITLTLQDNGEVVVDM 141
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + VP L + ++ LDV G ++ VSMGNPH V
Sbjct: 142 GAPVFAPAQVPFDAAGLDSRQEGRDTLWPLDVGGATRWISTVSMGNPHAVQVVDD----- 196
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V+ + E GP E H+ FP R N F++I+S ++K+RV+ERGAG TLACGTGACA V
Sbjct: 197 -VEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAV 255
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLLN 364
A + G + TV GG L I W ++E + M GPA VF G + LN
Sbjct: 256 AAGIRRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDLN 308
>gi|340781226|ref|YP_004747833.1| Diaminopimelate epimerase [Acidithiobacillus caldus SM-1]
gi|340555378|gb|AEK57132.1| Diaminopimelate epimerase [Acidithiobacillus caldus SM-1]
Length = 290
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/285 (43%), Positives = 160/285 (56%), Gaps = 23/285 (8%)
Query: 81 FVKYHGLGNDFILVD--NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
F K GLGNDF+++D RN + PE ++ DR++GIG D ++ P + D+
Sbjct: 15 FTKMEGLGNDFVVLDGVRRNFL---LDPETCRRIADRHYGIGCDQILLVEPASSPDCDFR 71
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DG E CGNG RCFA F+ L K+S V T +G + ++ DDG V VDM
Sbjct: 72 YRIFNADGGEVGQCGNGARCFALFVRR-AGLTDKRSIRVETASGPLELQVHDDGTVTVDM 130
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L +D+P A + LD+ + V MGNPH + L+V+
Sbjct: 131 GVPRLDPADIPFRAPAAAN----NYRLDLGQDHIELAAVGMGNPHAL---------LRVE 177
Query: 258 KLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ +AEIGP EHH FP RTN F+EI+SP L++R WERGAG TLACG+ ACA V
Sbjct: 178 DVRGAPVAEIGPLLEHHPAFPERTNVGFMEIVSPHALRLRTWERGAGETLACGSNACAAV 237
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VA G R V+LPGG L+I W H+ MTGPA VVF G
Sbjct: 238 VAGRGWGALRERVRVELPGGSLEIHWPGPGQHLRMTGPARVVFDG 282
>gi|373466458|ref|ZP_09557774.1| diaminopimelate epimerase [Haemophilus sp. oral taxon 851 str.
F0397]
gi|371760566|gb|EHO49248.1| diaminopimelate epimerase [Haemophilus sp. oral taxon 851 str.
F0397]
Length = 274
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 169/288 (58%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + T E +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTSETIQRLADRHRGIGFDQLLLVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E+H FP R N F++II+ +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IQTANVEQLGPLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G R VDLPGG L IEW + +YMTG A V+ G + L
Sbjct: 227 VGIIQGLLSNRVQVDLPGGSLIIEWNGVGHPLYMTGEATHVYDGFITL 274
>gi|303253047|ref|ZP_07339199.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|302648111|gb|EFL78315.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
Length = 274
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 175/291 (60%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++D + +T E KL DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVIDGV-TQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T G +V ++D+ KV+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + VP + + + +++++L V C VSMGNPHCV L+
Sbjct: 119 GEPIWEPAQVPFTANKFEKNYILRTDLQT------VLCGVVSMGNPHCV---------LQ 163
Query: 256 VDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ +NLA E+GP E+H FP R N F+++++ + +K+RV+ERGAG T ACG+GAC
Sbjct: 164 VEDINLAPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACG 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ + +YMTG A ++ G + L
Sbjct: 224 AVAVGIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274
>gi|359436235|ref|ZP_09226353.1| diaminopimelate epimerase [Pseudoalteromonas sp. BSi20311]
gi|392557157|ref|ZP_10304294.1| diaminopimelate epimerase [Pseudoalteromonas undina NCIMB 2128]
gi|358029095|dbj|GAA62602.1| diaminopimelate epimerase [Pseudoalteromonas sp. BSi20311]
Length = 276
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 166/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
++F K HGLGNDF+++DN + ++ +Q KL DR+FGIG D ++ P D+
Sbjct: 2 LVNFSKMHGLGNDFVVIDNI-TQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E E CGNG RCFARF+ ++ L K +V T +G + I+ DG+V V+
Sbjct: 61 HYRIFNADGHEVEQCGNGARCFARFV-RMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P + + +P + + ++++E VSMGNPHCV ++V
Sbjct: 120 MGHPNFEPNKIPLKATKRELTYIIRAEEHT----VFSGAVSMGNPHCV---------MEV 166
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A++ GP E+H FP R N F+++IS +K+RVWERG TLACGTGACA
Sbjct: 167 DDIETAQVDTLGPLLENHERFPQRANIGFMQVISQEHIKLRVWERGVSETLACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+V ++ VDLPGG L + W E + V MTGPAE VF G V L
Sbjct: 227 MVIGFIQNKLTSTVQVDLPGGSLQVRWSGEGHPVRMTGPAEHVFDGQVAL 276
>gi|254526117|ref|ZP_05138169.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9202]
gi|221537541|gb|EEE39994.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9202]
Length = 286
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 173/293 (59%), Gaps = 17/293 (5%)
Query: 79 LHFVKYHGLGNDFILVDNR------NSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN 132
+ F KY G GNDFI++D+R N +I K+C+R FGIGADGVIF
Sbjct: 4 ITFEKYQGNGNDFIVIDSRGNDIYKNYKTNKIF--DIKKICNRQFGIGADGVIFIEEPNE 61
Query: 133 GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ-SFTVHTGAGLIVPEIQDDG 191
M IFNSDGSE +MCGNG+RC ++ +++N K + + T AGL + + +D
Sbjct: 62 DNYAKMIIFNSDGSEAQMCGNGIRCLVEYLHLNDSMNNKNIEYKIETKAGLKIAKYIND- 120
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
++ V MG PIL++ ++PT + NK S+ E K+ V MGNPH + F
Sbjct: 121 EITVKMGVPILESQNIPTKIE-NKINSIPSHEFIQKNFKYIGYAVGMGNPHLIFFVQD-- 177
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+ + L+++GP FE++ +FP +TN F +I++ +K++VWERG G TLACGTGAC
Sbjct: 178 ----ILSIVLSKLGPIFENNELFPEKTNVHFCQILNRDNIKVKVWERGVGPTLACGTGAC 233
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
A+ VAA G + V LPGG L I+W ++D V MTG A+ VF GS+L+N
Sbjct: 234 AIHVAAYKLGLCNSQTIVTLPGGDLKIDWSKDDCEVMMTGNAKRVFSGSMLVN 286
>gi|416052019|ref|ZP_11577981.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype e str. SC1083]
gi|347992507|gb|EGY33904.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype e str. SC1083]
Length = 274
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 172/290 (59%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVD--NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTD 135
+ F K HGLGNDF++VD +N P E +L DR+ G+G D ++ P + D
Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFP---TETIKRLADRHRGVGFDQLLVVEPPYDPELD 57
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G ++ +++DG V+V
Sbjct: 58 FHYRIFNADGSEVAQCGNGARCFARFVT-LKALTNKKDIAVSTQNGKMLLTVKEDGNVRV 116
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQN 253
+MGEPI + + +P + + + ++++E+ V C VSMGNPHCV Q
Sbjct: 117 NMGEPIWEPNKIPFTANKFEKNYILRTEIQT------VLCGAVSMGNPHCVV------QV 164
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ N+ ++GP E+H FP R N F+++++ +K+RV+ERGAG T ACG+GACA
Sbjct: 165 EDIQTANMEQLGPLLENHERFPERVNAGFMQVVNRQHIKLRVYERGAGETQACGSGACAA 224
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ E + +YMTG A V+ G V L
Sbjct: 225 VAVGIMQGLLDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVVYL 274
>gi|319642980|ref|ZP_07997614.1| diaminopimelate epimerase [Bacteroides sp. 3_1_40A]
gi|345521524|ref|ZP_08800848.1| diaminopimelate epimerase [Bacteroides sp. 4_3_47FAA]
gi|254834388|gb|EET14697.1| diaminopimelate epimerase [Bacteroides sp. 4_3_47FAA]
gi|317385345|gb|EFV66290.1| diaminopimelate epimerase [Bacteroides sp. 3_1_40A]
Length = 280
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 128/295 (43%), Positives = 170/295 (57%), Gaps = 33/295 (11%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAA-KLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K G GND+I V+ +S P P +AA K + GIGADG++ GV+ D+
Sbjct: 5 IKFTKMQGTGNDYIYVNTLSS--PLQDPIKAARKWSAYHTGIGADGLVLI--GVSEKADF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAE----------LENLNGKQSFTVHTGAGLIVPE 186
+MRIFN+DGSE MCGN RC +++ E LE L+G + +HTG G++
Sbjct: 61 SMRIFNADGSEAMMCGNASRCIGKYVYEKGLTDKEVITLETLSGIKILKLHTGNGVV--- 117
Query: 187 IQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTF 246
V VDMG P+L P + A K ++ + DG ++ T V MGNPH V F
Sbjct: 118 ----KDVTVDMGTPLLSN---PGQI-ATKTGGMLAETILADGKEYKGTFVCMGNPHVVIF 169
Query: 247 GTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLAC 306
+ +++L +GPK E+H +FP RTN EFVEI+ L+MRVWERG+G T+AC
Sbjct: 170 VDD------IKEVDLPAVGPKLENHPLFPERTNVEFVEILPDQSLRMRVWERGSGITMAC 223
Query: 307 GTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
GTGACA VAAVL A R+ V + GG L I W E+D HVYMTGPA VF G +
Sbjct: 224 GTGACATAVAAVLNHKAGRKSWVRMDGGDLHIHWDEKDGHVYMTGPAGKVFEGEI 278
>gi|444357443|ref|ZP_21158979.1| diaminopimelate epimerase [Burkholderia cenocepacia BC7]
gi|443606345|gb|ELT74132.1| diaminopimelate epimerase [Burkholderia cenocepacia BC7]
Length = 289
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 163/293 (55%), Gaps = 14/293 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D + P +T Q L +R+FGIGAD ++ P V+G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTDAQVRALANRHFGIGADQLLLVEKPTVDGADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+++ L K+S V GLI +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVSD-RGLTDKRSVRVQVMKGLITLTLQDNGEVVVDM 121
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + VP L ++ LDV G ++ VSMGNPH V
Sbjct: 122 GAPVFAPAQVPFDAAGLDGRQEGRDTLWPLDVGGATRWISTVSMGNPHAVQVVDD----- 176
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ + E GP E H+ FP R N F++I+S ++K+RV+ERGAG TLACGTGACA V
Sbjct: 177 -AEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAV 235
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLLN 364
A + G + TV GG L I W ++E + M GPA VF G + LN
Sbjct: 236 AAGIRRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDLN 288
>gi|332534420|ref|ZP_08410260.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis ANT/505]
gi|332036154|gb|EGI72629.1| diaminopimelate epimerase [Pseudoalteromonas haloplanktis ANT/505]
Length = 276
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 167/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
++F K HGLGNDF+++DN + ++ +Q KL DR+FGIG D ++ P D+
Sbjct: 2 LVNFSKMHGLGNDFVVIDNI-TQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG+E E CGNG RCFARF+ ++ L K +V T +G + I+ DG+V V+
Sbjct: 61 HYRIFNADGTEVEQCGNGARCFARFV-RMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P + S +P S + +++++ VSMGNPHCV L+V
Sbjct: 120 MGHPNFEPSKIPLKASKRELTYIIRTQEHT----VFSGAVSMGNPHCV---------LEV 166
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A++ GP E+H FP + N F++++S +K+RVWERG TLACGTGACA
Sbjct: 167 DDVTTAQVDILGPLLENHERFPQKANIGFMQVVSQEHIKLRVWERGVNETLACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+V ++ VDLPGG L + W E + V MTGPAE VF G V L
Sbjct: 227 MVIGHMQNKLSTTVQVDLPGGTLQVRWSGEGHPVRMTGPAEHVFDGQVAL 276
>gi|107024016|ref|YP_622343.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054]
gi|116691103|ref|YP_836726.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424]
gi|105894205|gb|ABF77370.1| diaminopimelate epimerase [Burkholderia cenocepacia AU 1054]
gi|116649192|gb|ABK09833.1| diaminopimelate epimerase [Burkholderia cenocepacia HI2424]
Length = 309
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 166/293 (56%), Gaps = 14/293 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D + P +T Q L +R+FGIGAD ++ P V+G D+
Sbjct: 23 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFK 82
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+++ L ++S V GLI +Q++G+V VDM
Sbjct: 83 YRIFNCDGGEVEHCGNGARCFVKFVSD-RGLTDQRSVRVQVMKGLITLTLQENGEVVVDM 141
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + VP L + K+ + LDV G ++ VSMGNPH V
Sbjct: 142 GAPVFAPAQVPFDAAGLDSRKEGNDTLWPLDVGGATRWISTVSMGNPHAVQVVDD----- 196
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V+ + E GP E H+ FP R N F++I+S ++K+RV+ERGAG TLACGTGACA V
Sbjct: 197 -VEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAV 255
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLLN 364
A + G + TV GG L I W ++E + M GPA VF G + LN
Sbjct: 256 AAGIRRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDLN 308
>gi|408381083|ref|ZP_11178633.1| diaminopimelate epimerase [Methanobacterium formicicum DSM 3637]
gi|407816348|gb|EKF86910.1| diaminopimelate epimerase [Methanobacterium formicicum DSM 3637]
Length = 290
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/303 (41%), Positives = 173/303 (57%), Gaps = 35/303 (11%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRI----TPEQAAKLCDRNFGIGADGVIFAMPGVNG 133
L F K HGLGND++++D STE I E AA+LC R F +GADGVIF P V
Sbjct: 6 ILLFHKMHGLGNDYVVIDE--STEELIPEDKKSEIAAELCTRGFSVGADGVIFVSPSVE- 62
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAE----------LENLNGKQSFTVHTGAGLI 183
D RIFNSDGSE +MCGNG+RCF +++ E +E L G + T++ G +
Sbjct: 63 ADIRFRIFNSDGSEAQMCGNGIRCFGKYVYENDVVKQKKMTVETLGGTKELTLYVENGTV 122
Query: 184 VPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHC 243
++VDMG K S+VP ++++ + EL VDG N+T +S+GNPH
Sbjct: 123 -------KSIRVDMGTATFKTSEVPMD---SEEEEFIDQELMVDGEPMNLTAISVGNPHA 172
Query: 244 VTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGAT 303
+ F NLK ++ L +GP E+H FP RTN FV ++SP +++M WERGAG T
Sbjct: 173 IIFN----DNLK--EVALDHLGPLIENHEAFPERTNVHFVGVVSPQEVEMLTWERGAGFT 226
Query: 304 LACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHV--YMTGPAEVVFYGSV 361
+ACGTGA + V+A G ++ V LPGG L I E+D ++ +M G A VF G +
Sbjct: 227 MACGTGATSTVIAGYKLGLLQKDVLVHLPGGDLQITVYEKDGNLGAFMEGDAVSVFEGIM 286
Query: 362 LLN 364
L+
Sbjct: 287 ELD 289
>gi|419839738|ref|ZP_14363141.1| diaminopimelate epimerase [Haemophilus haemolyticus HK386]
gi|386909083|gb|EIJ73763.1| diaminopimelate epimerase [Haemophilus haemolyticus HK386]
Length = 274
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 168/288 (58%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + T E +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTSETIQRLADRHRGIGFDQLLLVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E H FP R N F++II+ +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G R VDLPGG L IEW + +YMTG A V+ G + L
Sbjct: 227 VGIMQGLLNNRVQVDLPGGSLIIEWNGVGHPLYMTGEATHVYDGFITL 274
>gi|386816200|ref|ZP_10103418.1| diaminopimelate epimerase [Thiothrix nivea DSM 5205]
gi|386420776|gb|EIJ34611.1| diaminopimelate epimerase [Thiothrix nivea DSM 5205]
Length = 279
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 176/290 (60%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIF--AMPGVNGTDY 136
LHF K G+GNDF+++D + R+ Q + DR+FG+G D V+ A G + D+
Sbjct: 6 LHFTKMQGIGNDFVVLDGIRQ-QVRLDAAQIRWIADRHFGVGCDQVLLVEAYAGED-ADF 63
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E E CGNG RCFARF+ + + L K + V T AG I+ +IQ DG+V V+
Sbjct: 64 RYRIFNADGGEVEQCGNGARCFARFVYD-QGLTHKTTIPVMTAAGRILLQIQPDGQVTVN 122
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L+ + +P + + Q++ L++ G + VSMGNPH V L+V
Sbjct: 123 MGVPELEPARIP--FISERRQTLYN--LEMAGKTVSFAAVSMGNPHAV---------LQV 169
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ +++A + G + E H FP R N F++++ +++RV+ERG+G TLACGTGACA
Sbjct: 170 ENVDIAPVTMLGSQLESHPAFPRRVNVGFMQVMGRDSIRLRVFERGSGETLACGTGACAA 229
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VVA ++G + + TV L GG L IEW+ E V+MTGPAE VF G++ +
Sbjct: 230 VVAGRIQGLLDGQATVTLAGGCLQIEWQGEGQPVWMTGPAETVFRGTLTI 279
>gi|372272884|ref|ZP_09508932.1| diaminopimelate epimerase [Marinobacterium stanieri S30]
Length = 276
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 160/289 (55%), Gaps = 19/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++D S ++TP+ KL DRN GIG D ++ P D+
Sbjct: 3 VRFTKMHGLGNDFMVIDAL-SQRVKLTPKIVRKLSDRNLGIGFDQLLLVEPPSRPDMDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI+N+DGSE E CGNG RCF RF+ + L K V T G V + D +V VDM
Sbjct: 62 YRIYNADGSEVEHCGNGARCFGRFVRD-RRLTMKDEIRVETARGQAVIYLLKDRQVDVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L VP + +Q V +DVDG ++ SMGNPH V L VD
Sbjct: 121 GAPEL----VPAEIPFQAEQQAVIYPIDVDGQTLELSAASMGNPHGV---------LVVD 167
Query: 258 KLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
++ A + GP E H FP + N F++++S +++++RV+ERGAG TLACGTGACA V
Sbjct: 168 DVDTAPVETLGPALESHPRFPQKANIGFMQVVSRNEIRLRVYERGAGETLACGTGACAAV 227
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA L G + V LPGG L I W E V M GPA VF G + L
Sbjct: 228 VAGRLRGLLDEDVLVHLPGGELRIRWAGEGKAVRMIGPATTVFEGQIYL 276
>gi|334132111|ref|ZP_08505872.1| Diaminopimelate epimerase [Methyloversatilis universalis FAM5]
gi|333442757|gb|EGK70723.1| Diaminopimelate epimerase [Methyloversatilis universalis FAM5]
Length = 277
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 120/288 (41%), Positives = 158/288 (54%), Gaps = 15/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D R + +TP+Q L DR+FG+G D ++ D+
Sbjct: 3 LRFSKMHGLGNDFVVIDAIRQQVD--LTPQQVRFLADRHFGVGCDQLLVVERAQRPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E E CGNG RCF RF+ E + L KQ V T +G+I QDDG+V V+
Sbjct: 61 RYRIFNADGGEVEQCGNGARCFVRFVIE-QGLTDKQEIRVETKSGVITLSAQDDGQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P+ + + +P D LDV G +T VSMGNPH V
Sbjct: 120 MGVPVFEPARIPF----QSDSDAFVQPLDVAGTPVAITAVSMGNPHAVQVVAD------A 169
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
D + GP E H FPAR N F++++ P +++RV+ERGAG TLACGTGACA VVA
Sbjct: 170 DAAPVGVQGPLIESHPRFPARVNAGFMQVVDPHHIRLRVYERGAGETLACGTGACAAVVA 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
++ E V GG L+I W E V++TGPA VF + L
Sbjct: 230 GIVRNLLESPVRVSTRGGELNIAWAGEGAPVFITGPAVTVFEADIHLE 277
>gi|206558908|ref|YP_002229668.1| diaminopimelate epimerase [Burkholderia cenocepacia J2315]
gi|421865655|ref|ZP_16297331.1| Diaminopimelate epimerase [Burkholderia cenocepacia H111]
gi|444367633|ref|ZP_21167560.1| diaminopimelate epimerase [Burkholderia cenocepacia K56-2Valvano]
gi|198034945|emb|CAR50817.1| diaminopimelate epimerase [Burkholderia cenocepacia J2315]
gi|358074539|emb|CCE48209.1| Diaminopimelate epimerase [Burkholderia cenocepacia H111]
gi|443602518|gb|ELT70592.1| diaminopimelate epimerase [Burkholderia cenocepacia K56-2Valvano]
Length = 309
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 163/293 (55%), Gaps = 14/293 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D + P +T Q L +R+FGIGAD ++ P V+G D+
Sbjct: 23 LSFTKMHGAGNDFVVLDGYSRALPPLTDAQVRALANRHFGIGADQLLLVEKPTVDGADFK 82
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+++ L K+S V GLI +QD+G+V VDM
Sbjct: 83 YRIFNCDGGEVEHCGNGARCFVKFVSD-RGLTDKRSVRVQVMKGLITLTLQDNGEVVVDM 141
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + VP L ++ LDV G ++ VSMGNPH V
Sbjct: 142 GAPVFAPAQVPFDAAGLDGRQEGRDTLWPLDVGGATRWISTVSMGNPHAVQVVDD----- 196
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ + E GP E H+ FP R N F++I+S ++K+RV+ERGAG TLACGTGACA V
Sbjct: 197 -AEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRREVKLRVYERGAGETLACGTGACAAV 255
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLLN 364
A + G + TV GG L I W ++E + M GPA VF G + LN
Sbjct: 256 AAGIRRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPATTVFEGEIDLN 308
>gi|115353182|ref|YP_775021.1| diaminopimelate epimerase [Burkholderia ambifaria AMMD]
gi|122321974|sp|Q0BAY6.1|DAPF_BURCM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|115283170|gb|ABI88687.1| diaminopimelate epimerase [Burkholderia ambifaria AMMD]
Length = 289
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 165/293 (56%), Gaps = 14/293 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D + P +T Q L +R+FGIGAD ++ P V+G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+++ L K+S V GLI +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVSD-RGLTDKRSVRVQVMKGLITLTLQDNGEVVVDM 121
Query: 198 GEPILKASDVPTSLSANKDQSVVKSEL---DVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + VP +S ++ + L DV G ++ VSMGNPH V
Sbjct: 122 GAPVFAPAQVPFDVSGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVVDD----- 176
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V+ + E GP E H+ FP R N F++I+S ++K+RV+ERGAG TLACGTGACA V
Sbjct: 177 -VEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAV 235
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLLN 364
A + G + TV GG L I W ++E + M GPA VF G + L
Sbjct: 236 AAGIRRGLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDLT 288
>gi|418464570|ref|ZP_13035509.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
RhAA1]
gi|359756525|gb|EHK90682.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
RhAA1]
Length = 274
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 172/290 (59%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVD--NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTD 135
+ F K HGLGNDF++VD +N P E +L DR+ G+G D ++ P + D
Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFP---TETIKRLADRHRGVGFDQLLVVEPPYDPELD 57
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G ++ +++DG V+V
Sbjct: 58 FHYRIFNADGSEVAQCGNGARCFARFVT-LKALTNKKDIAVSTQNGKMLLTVKEDGNVRV 116
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQN 253
+MGEPI + + +P + + + ++++E+ V C VSMGNPHCV Q
Sbjct: 117 NMGEPIWEPNKIPFTANKFEKNYILRTEIQT------VLCGAVSMGNPHCVV------QV 164
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ N+ ++GP E+H FP R N F+++++ +K+RV+ERGAG T ACG+GACA
Sbjct: 165 EDIQTANVEQLGPLLENHERFPERVNAGFMQVVNRQHIKLRVYERGAGETQACGSGACAA 224
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ E + +YMTG A V+ G V L
Sbjct: 225 VAVGIMQGLLDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVVYL 274
>gi|359449563|ref|ZP_09239053.1| diaminopimelate epimerase [Pseudoalteromonas sp. BSi20480]
gi|358044643|dbj|GAA75302.1| diaminopimelate epimerase [Pseudoalteromonas sp. BSi20480]
Length = 269
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 120/283 (42%), Positives = 163/283 (57%), Gaps = 19/283 (6%)
Query: 85 HGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNS 143
HGLGNDF+++DN + ++ +Q KL DR+FGIG D ++ P D+ RIFN+
Sbjct: 2 HGLGNDFVVIDNI-TQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDFHYRIFNA 60
Query: 144 DGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILK 203
DG+E E CGNG RCFARF+ ++ L K +V T +G + I+ DG+V V+MG P +
Sbjct: 61 DGTEVEQCGNGARCFARFV-RMKGLTNKHKISVSTKSGNLTLYIEKDGQVTVNMGHPNFE 119
Query: 204 ASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAE 263
S +P S + ++++E VSMGNPHCV L+VD + A+
Sbjct: 120 PSKIPLKASKRELTYIIRAEEHT----VFSGAVSMGNPHCV---------LEVDDIATAQ 166
Query: 264 I---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLE 320
+ GP E+H FP R N F+++IS +K+RVWERG TLACGTGACA +V ++
Sbjct: 167 VDVLGPLLENHERFPQRANIGFMQVISQEHIKLRVWERGVNETLACGTGACAAMVIGHMQ 226
Query: 321 GHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VDLPGG L I W E + V MTGPAE VF G V L
Sbjct: 227 SKLSSAVQVDLPGGTLQIRWSGEGHPVRMTGPAEHVFDGQVAL 269
>gi|359432155|ref|ZP_09222548.1| diaminopimelate epimerase [Pseudoalteromonas sp. BSi20652]
gi|357921247|dbj|GAA58797.1| diaminopimelate epimerase [Pseudoalteromonas sp. BSi20652]
Length = 269
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 119/283 (42%), Positives = 163/283 (57%), Gaps = 19/283 (6%)
Query: 85 HGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNS 143
HGLGNDF+++DN + ++ +Q KL DR+FGIG D ++ P D+ RIFN+
Sbjct: 2 HGLGNDFVVIDNI-TQNVFLSRDQIKKLADRHFGIGFDQLLMVEAPYSPDLDFHYRIFNA 60
Query: 144 DGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILK 203
DG+E E CGNG RCFARF+ ++ L K TV T +G + I+ DG+V V+MG P +
Sbjct: 61 DGTEVEQCGNGARCFARFV-RMKGLTNKHKITVSTKSGNLTLYIEKDGQVTVNMGHPNFE 119
Query: 204 ASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAE 263
S +P S + ++++E VSMGNPHCV L+VD + A+
Sbjct: 120 PSKIPLKASKRELTYIIRTEEHT----VFSGAVSMGNPHCV---------LEVDDVTTAQ 166
Query: 264 I---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLE 320
+ GP E+H FP + N F++++S +K+RVWERG TLACGTGACA +V L+
Sbjct: 167 VDILGPLLENHERFPQKANIGFMQVVSQEHIKLRVWERGVNETLACGTGACAAMVIGHLQ 226
Query: 321 GHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VDLPGG L + W E + V MTGPAE VF G V L
Sbjct: 227 NKLSTTVQVDLPGGSLQVRWSGEGHPVRMTGPAEHVFDGQVAL 269
>gi|319791648|ref|YP_004153288.1| diaminopimelate epimerase [Variovorax paradoxus EPS]
gi|315594111|gb|ADU35177.1| diaminopimelate epimerase [Variovorax paradoxus EPS]
Length = 300
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 128/292 (43%), Positives = 162/292 (55%), Gaps = 18/292 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPG-VNGTDYT 137
+ F K G GNDF+++D T ++ Q L DR+FG+GAD ++ P G D+
Sbjct: 3 IRFTKMQGAGNDFVVLDETRGTL-GLSAAQYRFLADRHFGVGADQILTVRPSPAEGIDFQ 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
I N+DG E E CGNG RCF RF+ E L K V T AG+I P + DG+V VDM
Sbjct: 62 YVIHNADGGEVEQCGNGARCFMRFVKE-HKLTDKTQVRVQTLAGVIEPRMGADGRVTVDM 120
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKW-----NVTCVSMGNPHCVTFGTK 249
G PI +A+ VP L A D S K L + G + +V +SMGNPH V
Sbjct: 121 GAPIFEAARVPFDTAGLDAQPDGSWEKWHLAL-GTRAGSPIVSVAVLSMGNPHAVQVVDN 179
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
VD +AE GP+ EHH FP R N F++++ S +K+RV+ERGAG TLACGTG
Sbjct: 180 ------VDTAPVAEQGPQIEHHPRFPQRVNAGFMQVVDRSHIKLRVFERGAGETLACGTG 233
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
ACA VVA + G E R V GG L IEW+ E V MTGPA VF G +
Sbjct: 234 ACAAVVAGIRLGLLESRVDVQTHGGILTIEWQGEGQPVLMTGPATTVFEGDI 285
>gi|15603568|ref|NP_246642.1| diaminopimelate epimerase [Pasteurella multocida subsp. multocida
str. Pm70]
gi|383311736|ref|YP_005364546.1| diaminopimelate epimerase [Pasteurella multocida subsp. multocida
str. HN06]
gi|386835581|ref|YP_006240900.1| diaminopimelate epimerase [Pasteurella multocida subsp. multocida
str. 3480]
gi|417854552|ref|ZP_12499842.1| diaminopimelate epimerase [Pasteurella multocida subsp. multocida
str. Anand1_goat]
gi|421264472|ref|ZP_15715452.1| diaminopimelate epimerase [Pasteurella multocida subsp. multocida
str. P52VAC]
gi|425066580|ref|ZP_18469700.1| Diaminopimelate epimerase [Pasteurella multocida subsp. gallicida
P1059]
gi|13431432|sp|P57962.1|DAPF_PASMU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|12722112|gb|AAK03787.1| DapF [Pasteurella multocida subsp. multocida str. Pm70]
gi|338217754|gb|EGP03594.1| diaminopimelate epimerase [Pasteurella multocida subsp. multocida
str. Anand1_goat]
gi|380873008|gb|AFF25375.1| diaminopimelate epimerase [Pasteurella multocida subsp. multocida
str. HN06]
gi|385202286|gb|AFI47141.1| diaminopimelate epimerase [Pasteurella multocida subsp. multocida
str. 3480]
gi|401688162|gb|EJS83809.1| diaminopimelate epimerase [Pasteurella multocida subsp. multocida
str. P52VAC]
gi|404381368|gb|EJZ77845.1| Diaminopimelate epimerase [Pasteurella multocida subsp. gallicida
P1059]
Length = 274
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 169/288 (58%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFVVVDAI-TQNLYFSPETIKRLADRHRGIGFDQMLIVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G ++ I+DDG ++++M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTDKKDIAVSTQTGKMILSIKDDGMIRINM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++ + V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTSIQ------TVLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E+H FP R N F+++I +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IQTANVEQLGPLLENHERFPERVNAGFMQVIHRGHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V++G + + VDLPGG L IEW+ ++MTG A V+ G + L
Sbjct: 227 VGVMQGLLDSKVQVDLPGGSLIIEWEGVGKPLFMTGDATHVYDGVIRL 274
>gi|167764472|ref|ZP_02436593.1| hypothetical protein BACSTE_02856 [Bacteroides stercoris ATCC
43183]
gi|167697141|gb|EDS13720.1| diaminopimelate epimerase [Bacteroides stercoris ATCC 43183]
Length = 284
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 170/288 (59%), Gaps = 19/288 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDR-NFGIGADGVIFAMPGVNGTDYT 137
+ F K HG GND+I VD + P PE+ +K + GIG+DG++ + + D++
Sbjct: 5 IKFTKMHGAGNDYIYVDT--TRYPIENPEKLSKKWSAPHTGIGSDGLVL-IGRSDKADFS 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK----V 193
MRIFN+DGSE +MCGN RC +++ + + L K T+ T +G+ + ++ G V
Sbjct: 62 MRIFNADGSEAKMCGNASRCIGKYLYDYK-LTSKTEITLDTLSGIKILKLHATGDKVDTV 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG P SD P + + + + +++DG+++ T VSMGNPH V F
Sbjct: 121 TVDMGIP----SDEPVNYDGKGSKPMTEHPIEIDGIRYTGTTVSMGNPHLVIFVND---- 172
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ K++L+ IGPK E+H +FP RTN EF +++ +++MRVWERG+G T ACGTGACA
Sbjct: 173 --ITKVDLSSIGPKLENHPLFPDRTNVEFAQVLEEGKIRMRVWERGSGVTRACGTGACAT 230
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VAA L G A R+ + + GG L IEW HV+MTG A VF G +
Sbjct: 231 AVAAFLTGRAGRKSIIGMDGGTLTIEWDIATKHVFMTGEATKVFEGEM 278
>gi|303250998|ref|ZP_07337186.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|302650155|gb|EFL80323.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
Length = 274
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 175/291 (60%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++D + +T E KL DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVIDGV-TQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L++L KQ V T G +V ++D+ KV+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFVT-LKSLTNKQDIHVSTAKGKMVLTLKDEEKVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + VP + + + +++++L V C VSMGNPHCV L+
Sbjct: 119 GEPIWEPAQVPFTANKFEKNYILRTDLQT------VLCGVVSMGNPHCV---------LQ 163
Query: 256 VDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ +NL E+GP E+H FP R N F+++++ + +K+RV+ERGAG T ACG+GAC
Sbjct: 164 VEDINLTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACG 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ + +YMTG A ++ G + L
Sbjct: 224 AVAVGIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274
>gi|372487335|ref|YP_005026900.1| diaminopimelate epimerase [Dechlorosoma suillum PS]
gi|359353888|gb|AEV25059.1| diaminopimelate epimerase [Dechlorosoma suillum PS]
Length = 276
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 159/288 (55%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVD--NRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTD 135
L F K HGLGNDF+++D +N T +TP Q L DRNFG+G D ++ PG G D
Sbjct: 3 LEFTKMHGLGNDFVVLDGVRQNIT---LTPAQLRFLADRNFGVGCDQILLVEKPGQAGVD 59
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ RIFN+DGSE E CGNG RCF RF+ E + L K+ V T +G+I P ++ DG V V
Sbjct: 60 FRYRIFNADGSEVEQCGNGARCFVRFVHE-QGLTDKREIKVETKSGIISPRLEADGNVTV 118
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
DMG+P+ +P + V L V + +T VSMGNPH V
Sbjct: 119 DMGKPVFAPDRIPFVSPTDA----VIQPLQVGDQEVAITAVSMGNPHAVQVVED------ 168
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD +A GP E H FP R N F++++ +++RV+ERGAG TLACGTGACA VV
Sbjct: 169 VDTAPVAIQGPMIESHPRFPQRVNAGFLQVVDRHSVRLRVYERGAGETLACGTGACAAVV 228
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A + + V GG L I W V+MTGPA VF G + L
Sbjct: 229 AGISRDLLDSPVRVSTRGGELSIAWNGPGTPVHMTGPAVTVFSGEIEL 276
>gi|307253187|ref|ZP_07535063.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306859331|gb|EFM91368.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
Length = 279
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 175/291 (60%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++D + +T E KL DR+ G+G D ++ P + D+
Sbjct: 6 MQFSKMHGLGNDFMVIDGV-TQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFH 64
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L++L KQ V T G +V ++D+ KV+V+M
Sbjct: 65 YRIFNADGSEVAQCGNGARCFARFVT-LKSLTNKQDIHVSTAKGKMVLTLKDEEKVRVNM 123
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + VP + + + +++++L V C VSMGNPHCV L+
Sbjct: 124 GEPIWEPAQVPFTANKFEKNYILRTDLQT------VLCGVVSMGNPHCV---------LQ 168
Query: 256 VDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ +NL E+GP E+H FP R N F+++++ + +K+RV+ERGAG T ACG+GAC
Sbjct: 169 VEDINLTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACG 228
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ + +YMTG A ++ G + L
Sbjct: 229 AVAVGIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279
>gi|417845002|ref|ZP_12491035.1| Diaminopimelate epimerase [Haemophilus haemolyticus M21639]
gi|341955894|gb|EGT82339.1| Diaminopimelate epimerase [Haemophilus haemolyticus M21639]
Length = 274
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 168/288 (58%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + T E +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTSETIQRLADRHRGIGFDQLLLVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E H FP R N F++II+ +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IQTANVEQLGPLLESHERFPERVNAGFMQIINKDHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G R VDLPGG L IEW + +YMTG A V+ G + L
Sbjct: 227 VGIMQGLLNNRVQVDLPGGSLIIEWDGIGHPLYMTGEATHVYDGFITL 274
>gi|417839095|ref|ZP_12485301.1| Diaminopimelate epimerase [Haemophilus haemolyticus M19107]
gi|341955155|gb|EGT81618.1| Diaminopimelate epimerase [Haemophilus haemolyticus M19107]
Length = 274
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 168/288 (58%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + T E +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTSETIQRLADRHRGIGFDQLLLVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E H FP R N F++II+ +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IKTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G R VDLPGG L IEW + +YMTG A V+ G + L
Sbjct: 227 VGIMQGLLNNRVQVDLPGGSLIIEWDGIGHPLYMTGEATHVYDGFITL 274
>gi|114328164|ref|YP_745321.1| diaminopimelate epimerase [Granulibacter bethesdensis CGDNIH1]
gi|122326877|sp|Q0BS04.1|DAPF_GRABC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|114316338|gb|ABI62398.1| diaminopimelate epimerase [Granulibacter bethesdensis CGDNIH1]
Length = 275
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 120/286 (41%), Positives = 165/286 (57%), Gaps = 17/286 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F+K HGLGNDF++ D R ++ QAA + DR G+G D +I P D
Sbjct: 2 LIDFIKMHGLGNDFVVFDARKGPSLALSGSQAAAIADRRTGVGCDQLIVLEPSTV-ADAF 60
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
MRI+N DGSE CGN RC +A+L + +G + + T AGL++ EI +G + +DM
Sbjct: 61 MRIYNPDGSESGACGNATRC----VADLLHRDGIAAPCMETVAGLLLAEINGNG-ICIDM 115
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G+P L DVP + ++ + L+ G+K C SMGNPH F +
Sbjct: 116 GQPGLGWRDVPLA----REMDTLFLPLEAPGLKMPAAC-SMGNPHATFFVAD------LA 164
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+L++ GP E H +FP R N +++S S +++RVWERGAG TLACGTGACA +V A
Sbjct: 165 ELDIPVTGPLLERHPLFPERANIGHAQMLSRSHIRLRVWERGAGLTLACGTGACATLVNA 224
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V G AER V+L GG L I W+E+D HV MTGPA VF+G + L
Sbjct: 225 VRRGLAEREAVVELDGGQLLIHWREQDGHVLMTGPAATVFHGRIAL 270
>gi|256752262|ref|ZP_05493125.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus CCSD1]
gi|300914485|ref|ZP_07131801.1| diaminopimelate epimerase [Thermoanaerobacter sp. X561]
gi|307724279|ref|YP_003904030.1| diaminopimelate epimerase [Thermoanaerobacter sp. X513]
gi|320116154|ref|YP_004186313.1| diaminopimelate epimerase [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|256748830|gb|EEU61871.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus CCSD1]
gi|300889420|gb|EFK84566.1| diaminopimelate epimerase [Thermoanaerobacter sp. X561]
gi|307581340|gb|ADN54739.1| diaminopimelate epimerase [Thermoanaerobacter sp. X513]
gi|319929245|gb|ADV79930.1| diaminopimelate epimerase [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 274
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 123/290 (42%), Positives = 174/290 (60%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYT 137
+ F K HGLGNDFI+++ R + + E A KLCDR+FGIGADG++ P G+ D
Sbjct: 1 MKFTKMHGLGNDFIVIEARENVD---YSELAIKLCDRHFGIGADGLLVVEPSGI--ADIR 55
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-QDDGKV--- 193
MRIFN+DGSE EMCGNG RCFA+++ E + K+ V T AG+I+PE+ ++GKV
Sbjct: 56 MRIFNADGSEAEMCGNGSRCFAKYVYE-RGIVKKEKMAVETLAGVIMPEVFVENGKVESV 114
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
KV MG PI +A+ +P Q + + +DG + +T + +G PH + F +N
Sbjct: 115 KVYMGSPIFEANKIPVKTDK---QKFINEPVKIDGKVYKLTSIRVGVPHTIVFVKSLDEN 171
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ + E+GPK E S+FP TN +FV++ + +R WERG G TLACG+GACA
Sbjct: 172 M------IKELGPKIEKSSIFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACAS 225
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA+ + G ER V GG L +EW +DN +Y++G E VF G + L
Sbjct: 226 AVASAVLGKTERNVNVHFKGGKLLVEWL-DDNSIYLSGSVEEVFRGEIEL 274
>gi|117620561|ref|YP_855007.1| diaminopimelate epimerase [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|166224237|sp|A0KFI1.1|DAPF_AERHH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|117561968|gb|ABK38916.1| diaminopimelate epimerase [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 276
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 122/289 (42%), Positives = 167/289 (57%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + + + E KL DR+FGIG D ++ P + D+
Sbjct: 2 LIDFSKMHGLGNDFMVVDG-VTQKVFFSNEVIKKLADRHFGIGFDQLLLVEPPYDPELDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ L+ L + V T G IV +++ + +V V+
Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFV-RLKGLINRDRIAVSTARGRIVLQLEGENQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MG P + +P + +++++ + V C VSMGNPHCV +
Sbjct: 120 MGVPQFEPGKIPFRAQKAEKTYLLRAQ------EHTVMCGAVSMGNPHCVI------EVP 167
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V +A +GP E H FP R N F+E+++ S++K+RV+ERG G TLACGTGACA V
Sbjct: 168 SVADAPVATLGPIMERHERFPERVNVGFMEMVNASEIKLRVFERGVGETLACGTGACAAV 227
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G + R TV LPGG L I WK VYMTGPAE VF G + L
Sbjct: 228 VVGISQGKLKERVTVTLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL 276
>gi|190150861|ref|YP_001969386.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|307264212|ref|ZP_07545803.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
13 str. N273]
gi|229807483|sp|B3GYL3.1|DAPF_ACTP7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|189915992|gb|ACE62244.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|306870458|gb|EFN02211.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
13 str. N273]
Length = 274
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 175/291 (60%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++D + +T + KL DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVIDGV-TQNVYLTEDVIRKLADRHRGVGFDQLLLVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T G +V ++D+ KV+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + VP + + + +++++L V C VSMGNPHCV L+
Sbjct: 119 GEPIWEPAQVPFTANKFEKNYILRTDLQT------VLCGVVSMGNPHCV---------LQ 163
Query: 256 VDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ +NLA E+GP E+H FP R N F+++++ + +K+RV+ERGAG T ACG+GAC
Sbjct: 164 VEDINLAPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACG 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ + +YMTG A ++ G + L
Sbjct: 224 AVAVGIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274
>gi|46143537|ref|ZP_00135025.2| COG0253: Diaminopimelate epimerase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|126208995|ref|YP_001054220.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|307246450|ref|ZP_07528523.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|307255433|ref|ZP_07537240.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|307259885|ref|ZP_07541599.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|166224236|sp|A3N2H9.1|DAPF_ACTP2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|126097787|gb|ABN74615.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|306852654|gb|EFM84886.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|306861617|gb|EFM93604.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|306866055|gb|EFM97929.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
Length = 274
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 174/291 (59%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++D + +T E KL DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVIDGV-TQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T G +V ++D+ KV+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + VP + + + +++++L V C VSMGNPHCV L+
Sbjct: 119 GEPIWEPAQVPFTANKFEKNYILRTDLQT------VLCGVVSMGNPHCV---------LQ 163
Query: 256 VDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ +NL E+GP E+H FP R N F+++++ + +K+RV+ERGAG T ACG+GAC
Sbjct: 164 VEDINLTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACG 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ + +YMTG A ++ G + L
Sbjct: 224 AVAVGIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274
>gi|307262015|ref|ZP_07543670.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|306868298|gb|EFN00120.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
Length = 279
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 174/291 (59%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++D + +T E KL DR+ G+G D ++ P + D+
Sbjct: 6 MQFSKMHGLGNDFMVIDGV-TQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFH 64
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T G +V ++D+ KV+V+M
Sbjct: 65 YRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNM 123
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + VP + + + +++++L V C VSMGNPHCV L+
Sbjct: 124 GEPIWEPAQVPFTANKFEKNYILRTDLQT------VLCGVVSMGNPHCV---------LQ 168
Query: 256 VDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ +NL E+GP E+H FP R N F+++++ + +K+RV+ERGAG T ACG+GAC
Sbjct: 169 VEDINLTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACG 228
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ + +YMTG A ++ G + L
Sbjct: 229 AVAVGIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279
>gi|229807518|sp|A4G980.2|DAPF_HERAR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|193222419|emb|CAL63067.2| Diaminopimelate epimerase (DAP epimerase) [Herminiimonas
arsenicoxydans]
Length = 283
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 162/289 (56%), Gaps = 12/289 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADG-VIFAMPGVNGTDYT 137
+ F K HG GNDF+++D N + TP Q L DR FG+GAD ++ P G D+
Sbjct: 3 IKFTKMHGAGNDFVVIDAINQS-IHFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI+N+DG E E CGNG R F +F+ + + L KQ+ V T +G+I P ++ +G++ VDM
Sbjct: 62 YRIYNADGGEVEQCGNGARAFVKFVTD-KKLTDKQAIRVETMSGVIEPRLEANGQITVDM 120
Query: 198 GEPILKASDVPTSLSA---NKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G PIL DVP +S + + LD+ G ++ +SMGNPH V
Sbjct: 121 GAPILTPEDVPFDVSGLLCKAEGADTLWPLDIKGETHWISVLSMGNPHAVQVVAD----- 175
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
D + E G EHH FP R N F++II P Q+K+RV+ERGAG TLACGTGACA V
Sbjct: 176 -ADHAPVREDGVLIEHHPRFPKRVNAGFMQIIDPHQIKLRVFERGAGETLACGTGACAAV 234
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V+ + G V GG L I W +++ V +TGPA VF G + L
Sbjct: 235 VSGIRRGLLASPIKVQTRGGELSIAWAGDNSPVLLTGPAVTVFEGEIEL 283
>gi|189349037|ref|YP_001944665.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616]
gi|221215805|ref|ZP_03588764.1| diaminopimelate epimerase [Burkholderia multivorans CGD1]
gi|421475226|ref|ZP_15923200.1| diaminopimelate epimerase [Burkholderia multivorans CF2]
gi|189333059|dbj|BAG42129.1| diaminopimelate epimerase [Burkholderia multivorans ATCC 17616]
gi|221164341|gb|EED96828.1| diaminopimelate epimerase [Burkholderia multivorans CGD1]
gi|400230659|gb|EJO60421.1| diaminopimelate epimerase [Burkholderia multivorans CF2]
Length = 289
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 123/292 (42%), Positives = 163/292 (55%), Gaps = 14/292 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D + T P +T Q L R+FGIGAD ++ P V+G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+++ L K+S V GLI +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVSD-RGLTDKRSVRVQVMKGLITLTMQDNGEVVVDM 121
Query: 198 GEPILKASDVPTSLSANKDQSVVKSEL---DVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ VP S +S + L +V G ++ VSMGNPH V
Sbjct: 122 GAPVFAPEQVPFDASGLDGRSEGRDTLWPLEVGGRTRWISTVSMGNPHAVQVVDD----- 176
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ + E GP E H+ FP R N F++I+S S++K+RV+ERGAG TLACGTGACA V
Sbjct: 177 -AEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAV 235
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLL 363
A + G + TV GG L I W ++E + M GPA VF G + L
Sbjct: 236 AAGIRRGLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDL 287
>gi|240950051|ref|ZP_04754357.1| diaminopimelate epimerase [Actinobacillus minor NM305]
gi|240295469|gb|EER46217.1| diaminopimelate epimerase [Actinobacillus minor NM305]
Length = 274
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 174/291 (59%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +T E KL DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDGV-TQNVFLTEEIIQKLADRHRGIGFDQLLLVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T G +V ++++G+V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKQDIHVSTAKGKMVLSLKENGQVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++ L V C VSMGNPHCV L+
Sbjct: 119 GEPIWEPAQIPFTANKFEKNYILRTSLQ------TVLCGVVSMGNPHCV---------LQ 163
Query: 256 VDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ + A E+GP E+H FP R N F+++I+ + +K+RV+ERGAG T ACG+GAC
Sbjct: 164 VEDIQTAPVNELGPLLENHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACG 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + + VDLPGG L IEW+ + +YMTG A ++ G V L
Sbjct: 224 AVAVGIMQGLLDSKVQVDLPGGSLMIEWEGVGHSLYMTGDATHIYDGFVKL 274
>gi|212554786|gb|ACJ27240.1| Diaminopimelate epimerase [Shewanella piezotolerans WP3]
Length = 269
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 119/278 (42%), Positives = 161/278 (57%), Gaps = 13/278 (4%)
Query: 85 HGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNS 143
HGLGNDF++VD + +P+Q +L DRNFGIG D ++ P + D+ RIFN+
Sbjct: 2 HGLGNDFMVVDGV-TQNVFFSPDQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNA 60
Query: 144 DGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILK 203
DGSE E CGNG RCFARF+ + L K V T +G I ++ DGKV V+MG P+L+
Sbjct: 61 DGSEVEQCGNGARCFARFVRN-KGLTQKHKIRVSTSSGKITLRLERDGKVTVNMGVPMLE 119
Query: 204 ASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAE 263
S +P + + ++ + + VSMGNPHCV + N VD
Sbjct: 120 PSKIPFNAKKVEKTYLLMASTGT----YLCGAVSMGNPHCV-IDVDDVANTDVDT----- 169
Query: 264 IGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHA 323
IG + H FP N F+++++P +K+RV+ERGA TLACGTGACA VV +L+G
Sbjct: 170 IGSELTQHERFPKGVNVGFMQVVNPGYIKLRVYERGAAETLACGTGACAAVVVGILQGKL 229
Query: 324 ERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
ER VDLPGG L I W E ++MTGPAE V+ G +
Sbjct: 230 ERNVRVDLPGGTLMINWDGEGKPLWMTGPAEHVYDGQI 267
>gi|416891490|ref|ZP_11923073.1| Diaminopimelate epimerase [Aggregatibacter aphrophilus ATCC 33389]
gi|347815558|gb|EGY32197.1| Diaminopimelate epimerase [Aggregatibacter aphrophilus ATCC 33389]
Length = 274
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 171/290 (58%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVD--NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTD 135
+ F K HGLGNDF++VD +N P E +L DR+ GIG D ++ P + D
Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFP---TETIKRLADRHRGIGFDQLLVVEPPYDPELD 57
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V +++DG V+V
Sbjct: 58 FHYRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKKDIAVSTQKGKMVLSVKEDGNVRV 116
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQN 253
+MGEP+ + + +P + + + ++++ + V C VSMGNPHCV Q
Sbjct: 117 NMGEPVWEPNKIPFTANKFEKNYILRTTVQ------TVLCGAVSMGNPHCVV------QV 164
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ N+ ++GP E+H FP R N F+++++ +K+RV+ERGAG T ACG+GACA
Sbjct: 165 EDIQTANVQQLGPLLENHERFPERVNAGFMQVVNRKHIKLRVYERGAGETQACGSGACAA 224
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ E + +YMTG A V+ G + L
Sbjct: 225 VAVGIMQGVLDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVIYL 274
>gi|170700793|ref|ZP_02891784.1| Diaminopimelate epimerase [Burkholderia ambifaria IOP40-10]
gi|170134280|gb|EDT02617.1| Diaminopimelate epimerase [Burkholderia ambifaria IOP40-10]
Length = 294
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 163/298 (54%), Gaps = 19/298 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D + P +T Q L +R+FGIGAD ++ P V+G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+++ L K+S V GLI +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVSD-RGLTDKRSVRVQVMKGLITLTLQDNGEVVVDM 121
Query: 198 GEPILKASDVP--------TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTK 249
G P+ + VP + L + LDV G ++ VSMGNPH V
Sbjct: 122 GAPVFAPAQVPFDTAGPGASGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVVDD 181
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
V+ + E GP E H+ FP R N F++I+S ++K+RV+ERGAG TLACGTG
Sbjct: 182 ------VEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTG 235
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLLN 364
ACA V A + G + TV GG L I W ++E + M GPA VF G + L
Sbjct: 236 ACAAVAAGIRRGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPAATVFEGEIDLT 293
>gi|399051371|ref|ZP_10741293.1| diaminopimelate epimerase [Brevibacillus sp. CF112]
gi|433545769|ref|ZP_20502115.1| diaminopimelate epimerase [Brevibacillus agri BAB-2500]
gi|398050948|gb|EJL43293.1| diaminopimelate epimerase [Brevibacillus sp. CF112]
gi|432182931|gb|ELK40486.1| diaminopimelate epimerase [Brevibacillus agri BAB-2500]
Length = 286
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 127/290 (43%), Positives = 184/290 (63%), Gaps = 16/290 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K HGLGND++ V+ T + PE A ++ DRNFGIG DG+I +P D+
Sbjct: 1 MKFTKLHGLGNDYVYVNCFEETLAGVDLPELARRVSDRNFGIGGDGLILILPS-ERADFR 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ--DDGKVK- 194
MR+FN+DGSE + CGNG+RC ++++ + L +++FTV T G++ P + +DGKV+
Sbjct: 60 MRVFNNDGSEAKNCGNGLRCVSKYVYD-HGLTQQKTFTVETLGGIMKPVVSLGEDGKVEQ 118
Query: 195 --VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
+DMGEP + + +P ++ ++ + L+VDG + +T VSMGNPH + F +
Sbjct: 119 VTIDMGEPRFERAAIP--MTGIPEEQAREEVLEVDGTVFTMTAVSMGNPHAIIFVDE--- 173
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V ++ + GP+ E H FP RTN EF++I++ ++ RVWERG+G TLACGTGACA
Sbjct: 174 ---VRDEDVRKYGPQIEFHEWFPERTNVEFIQILNREEILFRVWERGSGVTLACGTGACA 230
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VAA L G +R+ TV L GG L I+W+EEDN VYMTGPA VF G +
Sbjct: 231 AAVAATLAGKVDRKVTVHLAGGDLFIDWREEDNRVYMTGPATEVFEGKYV 280
>gi|167625817|ref|YP_001676111.1| diaminopimelate epimerase [Shewanella halifaxensis HAW-EB4]
gi|167355839|gb|ABZ78452.1| Diaminopimelate epimerase [Shewanella halifaxensis HAW-EB4]
Length = 286
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 166/290 (57%), Gaps = 15/290 (5%)
Query: 74 RESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN- 132
R S + F K HGLGNDF++VD + +P+Q +L DRNFG+G D ++ P +
Sbjct: 8 RMSTLIQFTKMHGLGNDFMVVDGV-TQNVFFSPDQIKRLADRNFGVGFDQLLLVEPPYDP 66
Query: 133 GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK 192
D+ RIFN+DGSE E CGNG RCFARF+ + L K V T +G I ++ DGK
Sbjct: 67 DLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTHKHKIRVSTSSGKITLRLERDGK 125
Query: 193 VKVDMGEPILKASDVP-TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
V V+MG P+L+ S +P T+ K ++ S + VSMGNPHCV
Sbjct: 126 VTVNMGIPVLEPSKIPFTAKKVEKTYLLLASS-----GTYLCGAVSMGNPHCVI------ 174
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+ V ++ IG + +H FP N F+++++ +K+RV+ERGA TLACGTGAC
Sbjct: 175 EVDDVAAADVDTIGAELTNHERFPKGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGAC 234
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
A VV + +G +R VDLPGG L I W E ++MTGPAE V+ G +
Sbjct: 235 AAVVVGIQQGKLDRNVCVDLPGGSLMINWDGEGKPLWMTGPAEHVYDGQI 284
>gi|378775646|ref|YP_005177889.1| diaminopimelate epimerase [Pasteurella multocida 36950]
gi|356598194|gb|AET16920.1| diaminopimelate epimerase [Pasteurella multocida 36950]
Length = 274
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 168/288 (58%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFVVVDAI-TQNLYFSPETIKHLADRHRGIGFDQMLIVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G ++ I+DDG ++++M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTDKKDIAVSTQTGKMILSIKDDGMIRINM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++ + V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTSIQ------TVLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E+H FP R N F+++I +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IQTANVEQLGPLLENHERFPERVNAGFMQVIHRGHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V++G + + VDLPGG L IEW+ ++MTG A V+ G + L
Sbjct: 227 VGVMQGLLDSKVQVDLPGGSLIIEWEGVGKPLFMTGDATHVYDGVIRL 274
>gi|331005626|ref|ZP_08328995.1| Diaminopimelate epimerase [gamma proteobacterium IMCC1989]
gi|330420551|gb|EGG94848.1| Diaminopimelate epimerase [gamma proteobacterium IMCC1989]
Length = 282
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 122/289 (42%), Positives = 164/289 (56%), Gaps = 13/289 (4%)
Query: 74 RESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVN 132
R + L F K HGLGNDF++ D N + +TPE+ K+ DR FGIG D ++ +P
Sbjct: 4 RMTTRLRFTKMHGLGNDFVVFDGINQ-DIDLTPERIRKIADRRFGIGCDQLLVVEVPQHP 62
Query: 133 GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK 192
D+ RI+N DGSE E CGNG RCFA+F+ + + L GK + V T G++ G
Sbjct: 63 ENDFRYRIYNYDGSEVENCGNGARCFAKFVRD-KKLTGKNTIRVETLGGVLTLHASRQGD 121
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V VDMG P+L +++P N D V +L + +++ +SMGNPH VT
Sbjct: 122 VTVDMGVPVLTPAEIPF----NADSQAVNYDLALADQTISISAISMGNPHAVTLVDN--- 174
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + + GP E+HS FP R N F+ + S +++RV+ERG G TLACGTGACA
Sbjct: 175 ---VDTAPIEQWGPLIENHSRFPNRVNAGFMAVESRESIRLRVYERGVGETLACGTGACA 231
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VVA L+G + T L GG L IEW+ + V MTGPA VF G V
Sbjct: 232 AVVAGHLQGLLDPVVTAHLRGGDLRIEWQGIGHPVMMTGPATTVFQGQV 280
>gi|365967019|ref|YP_004948581.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
ANH9381]
gi|365745932|gb|AEW76837.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
ANH9381]
Length = 274
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 171/290 (58%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVD--NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTD 135
+ F K HGLGNDF++VD +N P E +L DR+ G+G D ++ P + D
Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNIYFP---TETIKRLADRHRGVGFDQLLVVEPPYDPELD 57
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G ++ +++DG V+V
Sbjct: 58 FHYRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKKDIAVSTQNGKMLLTVKEDGNVRV 116
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQN 253
+MGEPI K + +P + + + ++++E+ V C VSMGNPHCV Q
Sbjct: 117 NMGEPIWKPNKIPFTANKFEKNYILRTEIQT------VLCSAVSMGNPHCVV------QV 164
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ N+ ++GP E+H FP R N F+++++ +K+RV+ERG G T ACG+GACA
Sbjct: 165 EDIQTANVEQLGPLLENHERFPERVNAGFMQVVNRHHIKLRVYERGTGETQACGSGACAA 224
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ E + +YMTG A V+ G V L
Sbjct: 225 VAVGIMQGVLDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVVCL 274
>gi|255020693|ref|ZP_05292755.1| Diaminopimelate epimerase [Acidithiobacillus caldus ATCC 51756]
gi|254969929|gb|EET27429.1| Diaminopimelate epimerase [Acidithiobacillus caldus ATCC 51756]
Length = 290
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 122/285 (42%), Positives = 159/285 (55%), Gaps = 23/285 (8%)
Query: 81 FVKYHGLGNDFILVD--NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
F K GLGNDF+++D RN + PE ++ R++GIG D ++ P + D+
Sbjct: 15 FTKMEGLGNDFVVLDGVRRNFL---LDPETCQRIAHRHYGIGCDQILLVEPASSPDCDFR 71
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DG E CGNG RCFA F+ L K+S V T +G + ++ DDG V VDM
Sbjct: 72 YRIFNADGGEVGQCGNGARCFALFVRR-AGLTDKRSIRVETASGPLELQVHDDGTVTVDM 130
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L +D+P A + LD+ + V MGNPH + L+V+
Sbjct: 131 GVPRLDPADIPFRAPAAAN----NYRLDLGQDHIELAAVGMGNPHAL---------LRVE 177
Query: 258 KLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ +AEIGP EHH FP RTN F+EI+SP L++R WERGAG TLACG+ ACA V
Sbjct: 178 DVRGAPVAEIGPLLEHHPAFPERTNVGFMEIVSPHALRLRTWERGAGETLACGSNACAAV 237
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VA G R V+LPGG L+I W H+ MTGPA VVF G
Sbjct: 238 VAGRGWGALRERVRVELPGGSLEIHWPGPGQHLRMTGPARVVFDG 282
>gi|168333755|ref|ZP_02692005.1| Diaminopimelate epimerase [Epulopiscium sp. 'N.t. morphotype B']
Length = 279
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 128/294 (43%), Positives = 177/294 (60%), Gaps = 24/294 (8%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAA-KLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG+GND+I N E I P Q A +L DR+F IG DG++ P D
Sbjct: 1 MKFWKMHGIGNDYIYF---NCFEVEIKNPRQVAVELSDRHFSIGGDGIVLIGPS-RVADA 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN DGSE +MCGN +RC +++ E N+ K + + T +G+ +Q ++G V
Sbjct: 57 KMRMFNLDGSEGKMCGNAIRCVGKYLYE-NNITRKTNLKIETLSGIKDLTLQVENGAVNI 115
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
+VDMG PIL+ + +P L + ++ EL ++ V +N+TCVSMGNPHCV
Sbjct: 116 VEVDMGAPILEPAKIPVDLEGD---VIINHELXIEEVAYNITCVSMGNPHCVV------F 166
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + L +IGP FE++ +FP R NTEFV+ I+ + KMRVWERG+G TLACGTGACA
Sbjct: 167 VDDVDDIELEKIGPLFENNEIFPDRVNTEFVQKINETTYKMRVWERGSGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERR--CTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
V VA VL G+A++ T+ L GG L I + +E ++MTG A F G V N
Sbjct: 227 VAVACVLNGYAKKNEDITIILKGGELKIRYTDET--IFMTGTATKAFSGDVEFN 278
>gi|237654489|ref|YP_002890803.1| diaminopimelate epimerase [Thauera sp. MZ1T]
gi|237625736|gb|ACR02426.1| diaminopimelate epimerase [Thauera sp. MZ1T]
Length = 277
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 157/286 (54%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
L F K HGLGNDF+++D + +TP + + DR+FG+G D ++ P D+
Sbjct: 3 LRFTKMHGLGNDFVVIDATRAPVD-LTPARVKAIADRHFGVGCDQLLVVEPAARPDVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DG E E CGNG RCF RF+ + + L K V T +G+I P ++ DG V VDM
Sbjct: 62 YRIFNADGGEVEQCGNGARCFVRFVHD-KGLTDKAEIRVETRSGIIAPRLRADGLVTVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L + VP D V L V G +T VSMGNPH V VD
Sbjct: 121 GVPELAPAKVPFV----SDSDAVVQPLQVGGDTVAITAVSMGNPHAVQVVAD------VD 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ E G + E H FPAR N F++++ ++++RV+ERGAG TLACGTGACA VVA
Sbjct: 171 AAPVVEQGARIERHERFPARVNAGFLQVVDAHEVRLRVFERGAGETLACGTGACAAVVAG 230
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+L G E V GG L+I W V MTGPA VF G + L
Sbjct: 231 ILRGLLETPVRVHTRGGELEIAWDGPGTPVRMTGPAVTVFEGEMEL 276
>gi|295696033|ref|YP_003589271.1| diaminopimelate epimerase [Kyrpidia tusciae DSM 2912]
gi|295411635|gb|ADG06127.1| diaminopimelate epimerase [Kyrpidia tusciae DSM 2912]
Length = 277
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/287 (45%), Positives = 170/287 (59%), Gaps = 18/287 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ FVK HGLGNDFI+V+ P A CDR+FGIGADG++F +P + D M
Sbjct: 1 MKFVKMHGLGNDFIVVEG--HALPLDPGALARNWCDRHFGIGADGLVFVLPS-DRADVQM 57
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KVK 194
RIFN+DGSE E CGN VRC ++ E L ++ V T AG+ + +G +V
Sbjct: 58 RIFNADGSEAEQCGNAVRCVGKYAFE-RGLVRRRDLVVETLAGVQRIVLGGNGSRVEEVT 116
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMGEPIL+ +P +L+ S ++ G +W T VSMGNPH V F
Sbjct: 117 VDMGEPILEPGRIPVALAEGGTPS---GRVEAAGREWAFTAVSMGNPHAVIFVDD----- 168
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V+ ++ +G + E + +FP R N EFVE + P ++++RVWERG G TLACGTGACA V
Sbjct: 169 -VEGTDVRGVGSEVETNRLFPNRVNVEFVETLDPGEIRVRVWERGCGETLACGTGACAAV 227
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA LEG + R+ V LPGG L IEW ED VYMTGPA VF G +
Sbjct: 228 VAGALEGRSGRKVRVHLPGGTLKIEWA-EDGRVYMTGPAVEVFRGEI 273
>gi|268608022|ref|ZP_06141752.1| diaminopimelate epimerase [Ruminococcus flavefaciens FD-1]
Length = 292
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 125/291 (42%), Positives = 172/291 (59%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT-PEQAAK-LCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG+GND+I V N E +++ PE+ + L D GIG+DG++ MP + D+
Sbjct: 1 MKFTKMHGIGNDYIYV---NCFEEKVSEPEKVSVVLSDVRKGIGSDGLVLIMPS-DKADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQD-DGKVK- 194
MRIFN+DGSE MCGN RC +++ E + L K+ T+ T +G+ + +G V+
Sbjct: 57 RMRIFNADGSEAMMCGNATRCIGKYVYE-KGLTDKEDITLETNSGIRYLHLTAVNGVVEA 115
Query: 195 --VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
VDMG+ +L D+P + ++ + ++ DG W+VTCVSMGNPH V F
Sbjct: 116 VTVDMGKAVLVPKDIPVNSDLDR---FISQPVEADGRTWSVTCVSMGNPHAVIFVGD--- 169
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
D L+L + GPKFE+H +FP R NTEF+++I LKMRVWERG+G T ACGTGACA
Sbjct: 170 ---TDSLDLEKTGPKFENHQLFPDRINTEFIQVIDSRTLKMRVWERGSGETHACGTGACA 226
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VAAVL G R + L GG L I ++ D V M GPAE + G V
Sbjct: 227 SAVAAVLNGICPRDEEILIHLRGGDLTITYR-SDETVIMKGPAEFICDGEV 276
>gi|70733297|ref|YP_263071.1| diaminopimelate epimerase [Pseudomonas protegens Pf-5]
gi|68347596|gb|AAY95202.1| diaminopimelate epimerase [Pseudomonas protegens Pf-5]
Length = 276
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 134/290 (46%), Positives = 172/290 (59%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DRN GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRNTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I++DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTTKRQIRVETKSGVIELDIRNDGQISVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P A D LDVDG + + VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFQAPAQADSYT----LDVDGRQVQLAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A E+GPK EHH FPAR N F++++ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINSAPVHELGPKIEHHPRFPARVNVGFLQVLDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276
>gi|229845797|ref|ZP_04465909.1| diaminopimelate epimerase [Haemophilus influenzae 7P49H1]
gi|229810801|gb|EEP46518.1| diaminopimelate epimerase [Haemophilus influenzae 7P49H1]
Length = 274
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 168/288 (58%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
+ F K HGLGNDF++VD + TPE +L +R+ GIG D + I P D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E H FP R NT F++II+ +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IQTANVEQLGPLLESHERFPERVNTGFMQIINKEHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G VDLPGG L IEW + +YMTG A ++ G + L
Sbjct: 227 VGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274
>gi|58039894|ref|YP_191858.1| diaminopimelate epimerase [Gluconobacter oxydans 621H]
gi|81557036|sp|Q5FQZ4.1|DAPF_GLUOX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|58002308|gb|AAW61202.1| Diaminopimelate epimerase [Gluconobacter oxydans 621H]
Length = 257
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 122/283 (43%), Positives = 153/283 (54%), Gaps = 31/283 (10%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADG-VIFAMPGVNGTDYT 137
L F K HGLGNDF+++D R + +P + LCDR FGIG D V+ P + G D
Sbjct: 3 LSFTKMHGLGNDFVVIDGRQN-DPALETATIRHLCDRRFGIGCDQLVLLTPPTLAGADVH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
+R FN DGSE CGN RC A+F+ + T+ T AGL+ P QD VDM
Sbjct: 62 VRFFNPDGSEAGACGNASRCVAKFVG--------GAPTLQTAAGLL-PTAQDGDLFTVDM 112
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L DVP S + + + + SMGNPH FG D
Sbjct: 113 GTPRLDWQDVPLSRACDTLHLPLH----------DAAACSMGNPHATLFG---------D 153
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+GP E +FP R N F +I+SP +++RVWERGAG TLACG+GACA VV A
Sbjct: 154 AFRAEALGPGLERDPLFPERANIGFAQILSPIHMRLRVWERGAGLTLACGSGACAAVVNA 213
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
V G ER CTV + GG L I W+ ED HV+MTGPA VF+G+
Sbjct: 214 VRRGLTERTCTVTMDGGDLRITWR-EDGHVFMTGPAVTVFHGT 255
>gi|322834931|ref|YP_004214958.1| diaminopimelate epimerase [Rahnella sp. Y9602]
gi|384260154|ref|YP_005404088.1| diaminopimelate epimerase [Rahnella aquatilis HX2]
gi|321170132|gb|ADW75831.1| diaminopimelate epimerase [Rahnella sp. Y9602]
gi|380756130|gb|AFE60521.1| diaminopimelate epimerase [Rahnella aquatilis HX2]
Length = 274
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 169/291 (58%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVYFSPELIRRLSDRHRGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ ++ L K+ V T G +V + +D +V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RIKGLTNKRDIRVSTQTGRMVLTVTEDEEVQVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP+ + VP + + ++++E + V C VSMGNPHCV L+
Sbjct: 119 GEPVFEPQQVPFRAAKPEKTYILRAE------ERTVFCGVVSMGNPHCV---------LQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + AE+ GP E H FP R N F++I+SP +K+RV+ERGAG T ACG+GACA
Sbjct: 164 VDDVLTAEVEVLGPMLESHDRFPERVNVGFMQILSPESVKLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 224 AVAVGIQQGLLAEEVQVELPGGSLDIRWKGPGHPLYMTGPATHVYDGFIHL 274
>gi|161702953|ref|YP_370673.2| diaminopimelate epimerase [Burkholderia sp. 383]
Length = 289
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/292 (41%), Positives = 162/292 (55%), Gaps = 14/292 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D + P +T Q L +R+FGIGAD ++ P V+G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGVDFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+++ L K+S V GLI +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVSD-RGLTDKRSVRVQVMKGLITLTMQDNGEVVVDM 121
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + VP L + LDV G ++ V+MGNPH V
Sbjct: 122 GAPVFTPAQVPFDAAGLDGRTEGHDTLWPLDVGGATRWISTVTMGNPHAVQVVDD----- 176
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ + E GP EHH+ FP R N F++++S S++K+RV+ER AG TLACGTGACA V
Sbjct: 177 -AEAYPVLEEGPLIEHHARFPERVNAGFMQVVSRSEVKLRVYERAAGETLACGTGACAAV 235
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLL 363
A + G + TV GG L I W ++E + M GPA VF G + L
Sbjct: 236 AAGIRRGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDL 287
>gi|77968649|gb|ABB10029.1| diaminopimelate epimerase [Burkholderia sp. 383]
Length = 309
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/292 (41%), Positives = 162/292 (55%), Gaps = 14/292 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D + P +T Q L +R+FGIGAD ++ P V+G D+
Sbjct: 23 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGVDFK 82
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+++ L K+S V GLI +QD+G+V VDM
Sbjct: 83 YRIFNCDGGEVEHCGNGARCFVKFVSD-RGLTDKRSVRVQVMKGLITLTMQDNGEVVVDM 141
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + VP L + LDV G ++ V+MGNPH V
Sbjct: 142 GAPVFTPAQVPFDAAGLDGRTEGHDTLWPLDVGGATRWISTVTMGNPHAVQVVDD----- 196
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ + E GP EHH+ FP R N F++++S S++K+RV+ER AG TLACGTGACA V
Sbjct: 197 -AEAYPVLEEGPLIEHHARFPERVNAGFMQVVSRSEVKLRVYERAAGETLACGTGACAAV 255
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLL 363
A + G + TV GG L I W ++E + M GPA VF G + L
Sbjct: 256 AAGIRRGLLDSPVTVHTHGGTLTISWDGARDEAAALMMAGPATTVFEGEIDL 307
>gi|407781877|ref|ZP_11129093.1| diaminopimelate epimerase [Oceanibaculum indicum P24]
gi|407206916|gb|EKE76860.1| diaminopimelate epimerase [Oceanibaculum indicum P24]
Length = 279
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/283 (41%), Positives = 164/283 (57%), Gaps = 16/283 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F+K HGLGNDF+++D R + ++ Q + DR G+G D +I P NG D M
Sbjct: 4 LPFIKMHGLGNDFVVLDGR-AAPIALSEAQIRAIADRRTGVGFDQMIVIEPPKNGADAFM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RI N+DG E E CGN RC A +++E N + + ++ T G ++ + DG V VDMG
Sbjct: 63 RILNADGGEVEACGNATRCVASWLSEEAN---RPALSIETVVGTLLTNVNADGTVTVDMG 119
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
E L ++P + ++ +K V + TCV++GNPH V F +
Sbjct: 120 EARLGWDEIPLA----REMDTLKVAAGVAPL-LEATCVNVGNPHAVYFVED------AEA 168
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
+ +AEIGP+ EH +FP R N E V+I+SP++++MRVWERG G T ACGTGACA +VAAV
Sbjct: 169 IPMAEIGPRIEHDPMFPQRINVEAVQILSPTRMRMRVWERGVGITRACGTGACASLVAAV 228
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
G +ER+ V L GG L IEW E V MTGP + + G +
Sbjct: 229 RRGLSERKADVILDGGTLTIEWTEA-GRVLMTGPVAISYRGEL 270
>gi|171320564|ref|ZP_02909588.1| Diaminopimelate epimerase [Burkholderia ambifaria MEX-5]
gi|171094191|gb|EDT39274.1| Diaminopimelate epimerase [Burkholderia ambifaria MEX-5]
Length = 282
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/287 (42%), Positives = 161/287 (56%), Gaps = 14/287 (4%)
Query: 85 HGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNS 143
HG GNDF+++D + P +T Q L +R+FGIGAD ++ P V+G D+ RIFN
Sbjct: 2 HGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFKYRIFNC 61
Query: 144 DGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILK 203
DG E E CGNG RCF +F+++ L K+S V GLI +QD+G+V VDMG P+
Sbjct: 62 DGGEVEHCGNGARCFVKFVSD-RGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMGAPVFA 120
Query: 204 ASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLN 260
+ VP T L + LDV G ++ VSMGNPH V V+
Sbjct: 121 PAQVPFDATGLDGRTEGRDTLWPLDVGGATRWISAVSMGNPHAVQVVDD------VEAYP 174
Query: 261 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLE 320
+ E GP EHH+ FP R N F++I+S ++K+RV+ERGAG TLACGTGACA V A +
Sbjct: 175 VLEEGPLIEHHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRR 234
Query: 321 GHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLLN 364
G + TV GG L I W ++E + M GPA VF G + L
Sbjct: 235 GLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDLT 281
>gi|317494829|ref|ZP_07953240.1| diaminopimelate epimerase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917154|gb|EFV38502.1| diaminopimelate epimerase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 274
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/291 (41%), Positives = 168/291 (57%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVYFSPELIRRLSDRHNGVGFDQMLIVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V ++ DD V V+M
Sbjct: 60 YRIFNADGSEVGQCGNGARCFARFV-RLKGLTNKREIRVSTQNGRMVLKVSDDELVTVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + S +P + ++++ + + C VSMGNPHCV L+
Sbjct: 119 GEPIFEPSKIPFKAVKAEKTYIMRA------AEHTILCGAVSMGNPHCV---------LQ 163
Query: 256 VDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A IGP E H FP R N F+++I+ +Q+K+RV+ERGAG T ACG+GACA
Sbjct: 164 VDDVETALVETIGPVLESHERFPERVNVGFMQVINRNQIKLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G + VDLPGG L I WK DN ++MTGPA V+ G + L
Sbjct: 224 AVAVGIQQGLLDENVQVDLPGGRLQIRWKGPDNPLFMTGPATHVYDGFIHL 274
>gi|123966203|ref|YP_001011284.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9515]
gi|123200569|gb|ABM72177.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9515]
Length = 286
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 171/290 (58%), Gaps = 15/290 (5%)
Query: 81 FVKYHGLGNDFILVDNRN-STEPRITPEQA---AKLCDRNFGIGADGVIFAMPGVNGTDY 136
F KYHG GNDFI++D RN + + E +LCDR FGIG DG+IF +
Sbjct: 6 FEKYHGNGNDFIIIDTRNKNIFNKFISENIFDIKELCDRQFGIGGDGLIFILEPNGNNHA 65
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQS-FTVHTGAGLIVPEIQDDGKVKV 195
M I+NSDGSE +MCGNG+RC +++ + + S + + T AGL + + +DG++ V
Sbjct: 66 RMIIYNSDGSEAQMCGNGIRCLVQYLHNSKKGSHNSSEYRIETKAGLKIAQ-YNDGQISV 124
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVD-GVKWNVTCVSMGNPHCVTFGTKEGQNL 254
MG+PI+ +PT++ +K Q+ + + L + ++ V MGNPH + F
Sbjct: 125 KMGKPIIDIKSIPTNI--DKKQNFLPAFLFKESNFEYEGYAVGMGNPHLIFFVED----- 177
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ K++L+ +GP FE+H +FP +TN F +II+ +K+ VWERGAGATLACGTGACAV
Sbjct: 178 -ITKISLSLLGPVFENHKLFPEKTNVHFSQIINRDTIKVLVWERGAGATLACGTGACAVH 236
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VAA G + LPGG L I W + + M+G A+ VF G+ LN
Sbjct: 237 VAAFNLGLCNSETIIILPGGNLKINWSRLEEEIVMSGTAKKVFSGNYFLN 286
>gi|383192116|ref|YP_005202244.1| diaminopimelate epimerase [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|371590374|gb|AEX54104.1| diaminopimelate epimerase [Rahnella aquatilis CIP 78.65 = ATCC
33071]
Length = 274
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 168/291 (57%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVYFSPELIRRLSDRHRGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ ++ L K+ V T G +V + +D +V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RIKGLTNKRDIRVSTQTGRMVLTVTEDEEVQVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP+ + VP + + ++++E + V C VSMGNPHCV L+
Sbjct: 119 GEPVFEPQQVPFRAAKPEKTYILRAE------ERTVFCGVVSMGNPHCV---------LQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + AE+ GP E H FP R N F++I+SP +K+RV+ERGAG T ACG+GACA
Sbjct: 164 VDDVLTAEVEVLGPMLESHERFPERVNVGFMQILSPESVKLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G V+LPGG LDI WK +YMTGPA V+ G + L
Sbjct: 224 AVAVGIQQGLLAEEVQVELPGGSLDIRWKGPGYPLYMTGPATHVYDGFIHL 274
>gi|417843821|ref|ZP_12489886.1| Diaminopimelate epimerase [Haemophilus haemolyticus M21127]
gi|341948284|gb|EGT74914.1| Diaminopimelate epimerase [Haemophilus haemolyticus M21127]
Length = 274
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 172/291 (59%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + T E +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTSETIQRLADRHRGIGFDQLLLVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DG+E CGNG RCFARF+ L+ L K+ V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGTEVSQCGNGARCFARFVT-LKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV ++
Sbjct: 119 GEPIWEPTKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCV---------IQ 163
Query: 256 VDKL---NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + N+ ++GP E+H FP R N F++II+ +K+RV+ERGAG T ACG+GACA
Sbjct: 164 VDDIKTANVEQLGPLLENHERFPERVNAGFMQIINKDHIKLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G R V+LPGG L IEW + +YMTG A V+ G + L
Sbjct: 224 AVAVGIMQGLLNNRVQVNLPGGSLIIEWDGVGHPLYMTGEATHVYDGFITL 274
>gi|304316983|ref|YP_003852128.1| diaminopimelate epimerase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778485|gb|ADL69044.1| diaminopimelate epimerase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 277
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 168/288 (58%), Gaps = 19/288 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYT 137
+ F K +GLGNDFI+ +N ++ E A KLCDR+FGIGADG++ P G+ D
Sbjct: 1 MKFTKMNGLGNDFIVFENLDNEEYDYDI-LARKLCDRHFGIGADGLLIVEPSGI--ADIK 57
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDD--GKV 193
MRI NSDGSE EMCGNG RCFA+++ E + K +V T +G+I+PE+ +DD KV
Sbjct: 58 MRIINSDGSEAEMCGNGARCFAKYVYE-NGIVKKDKMSVETLSGIIMPELIFKDDVVEKV 116
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
KV MG PI + +P +S ++ + +DG + VT + +G PH + F
Sbjct: 117 KVHMGSPIFRTDMIPVKTDK---KSFIEETIKIDGRTYIVTSLLVGVPHTIIFVNS---- 169
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+DK + IGP E +FP TN +FV++ S + +R WERGAG T ACGTGACA
Sbjct: 170 --IDKNMILNIGPLIEKLQIFPRGTNVDFVKVEDDSNITVRTWERGAGLTFACGTGACAS 227
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA+ L +R V G L IEW DN++Y+TG AE VF G +
Sbjct: 228 AVASALTEKTKRNVYVHFKKGDLYIEWL-LDNNIYLTGIAEEVFTGEI 274
>gi|422021082|ref|ZP_16367596.1| diaminopimelate epimerase [Providencia sneebia DSM 19967]
gi|414099987|gb|EKT61620.1| diaminopimelate epimerase [Providencia sneebia DSM 19967]
Length = 274
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/287 (41%), Positives = 163/287 (56%), Gaps = 23/287 (8%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
+ F K HGLGNDF++VD + +PE ++L DR+ G+G D ++ P D+
Sbjct: 1 MQFSKMHGLGNDFMVVDGV-TQNVYFSPELISRLADRHTGVGFDQLLLVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T AG +V I D+G V V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKQKIQVSTQAGRMVLTINDNGDVCVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + +P + +++ + + V C VSMGNPHCV ++
Sbjct: 119 GEPEFEPQKIPFRAVKAEKTYIIRVQ------ERTVLCGAVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ + AE+ GP E H FP R N F+EI+S +++RV+ERGAG T ACG+GACA
Sbjct: 164 VESVQTAEVEILGPALESHERFPERANIGFMEIVSADHIRLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
V + +G R VDLPGG LDI W+ +YMTGPA V+ G
Sbjct: 224 AVAIGIQQGLLASRVKVDLPGGSLDISWEGPGTPLYMTGPASHVYDG 270
>gi|416068139|ref|ZP_11582663.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype f str. D18P1]
gi|348001383|gb|EGY42131.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype f str. D18P1]
Length = 274
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 172/290 (59%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVD--NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTD 135
+ F K HGLGNDF++VD +N P E +L DR+ G+G D ++ P + D
Sbjct: 1 MQFSKMHGLGNDFMVVDAMTQNIYFP---TETIKRLADRHRGVGFDQLLVVEPPYDPELD 57
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ RIFN+DGSE CGNG RCFARF+ L+ L K++ V T G ++ +++DG V+V
Sbjct: 58 FHYRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKKNIAVSTQNGKMLLTVKEDGNVRV 116
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQN 253
+MGEPI + + +P + + + ++++E+ V C VSMGNPHCV Q
Sbjct: 117 NMGEPIWEPNKIPFTANKFEKNYILRTEIQT------VLCSVVSMGNPHCVV------QV 164
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ N+ ++GP E+H FP R N F+++++ +K+RV+ERG G T ACG+GACA
Sbjct: 165 EDIQTANVEQLGPLLENHERFPERVNAGFMQVVNRHHIKLRVYERGTGETQACGSGACAA 224
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ E + +YMTG A V+ G V L
Sbjct: 225 VAVGIMQGVLDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVVCL 274
>gi|387121072|ref|YP_006286955.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|415765954|ref|ZP_11482891.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
D17P-3]
gi|416032190|ref|ZP_11572741.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype a str. H5P1]
gi|416045006|ref|ZP_11575189.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype d str. I63B]
gi|429732496|ref|ZP_19267106.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
Y4]
gi|347995834|gb|EGY36977.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype d str. I63B]
gi|348000244|gb|EGY41033.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype a str. H5P1]
gi|348653693|gb|EGY69380.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
D17P-3]
gi|385875564|gb|AFI87123.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|429156004|gb|EKX98646.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
Y4]
Length = 274
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 172/290 (59%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVD--NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTD 135
+ F K HGLGNDF++VD +N P E +L DR+ G+G D ++ P + D
Sbjct: 1 MQFSKMHGLGNDFMVVDAMTQNIYFP---TETIKRLADRHRGVGFDQLLVVEPPYDPELD 57
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ RIFN+DGSE CGNG RCFARF+ L+ L K++ V T G ++ +++DG V+V
Sbjct: 58 FHYRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKKNIAVSTQNGKMLLTVKEDGNVRV 116
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQN 253
+MGEPI + + +P + + + ++++E+ V C VSMGNPHCV Q
Sbjct: 117 NMGEPIWEPNKIPFTANKFEKNYILRTEIQT------VLCSAVSMGNPHCVV------QV 164
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ N+ ++GP E+H FP R N F+++++ +K+RV+ERG G T ACG+GACA
Sbjct: 165 EDIQTANVEQLGPLLENHERFPERVNAGFMQVVNRHHIKLRVYERGTGETQACGSGACAA 224
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ E + +YMTG A V+ G V L
Sbjct: 225 VAVGIMQGVLDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVVCL 274
>gi|307250808|ref|ZP_07532737.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|306857167|gb|EFM89294.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
4 str. M62]
Length = 274
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 174/291 (59%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++D + +T + KL DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVIDGV-TQNVYLTEDVIRKLADRHRGVGFDQLLLVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T G +V ++D+ KV+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + VP + + + +++++L V C VSMGNPHCV L+
Sbjct: 119 GEPIWEPAQVPFTANKFEKNYILRTDLQT------VLCGVVSMGNPHCV---------LQ 163
Query: 256 VDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ +NLA E+GP E+H FP R N F+++++ + +K+RV+ERGAG T ACG+GAC
Sbjct: 164 VEDINLAPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACG 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ + +YM G A ++ G + L
Sbjct: 224 AVAVGIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMAGDATHIYDGFIKL 274
>gi|145628368|ref|ZP_01784169.1| diaminopimelate epimerase [Haemophilus influenzae 22.1-21]
gi|144980143|gb|EDJ89802.1| diaminopimelate epimerase [Haemophilus influenzae 22.1-21]
Length = 274
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 168/288 (58%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
+ F K HGLGNDF++VD + TPE +L +R+ GIG D + I P D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTPETIQRLANRHCGIGFDQLLIVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ +V T G ++ ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDISVSTQKGNMILTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGTVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E H FP R N F++II+ +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G VDLPGG L IEW + +YMTG A V+ G + L
Sbjct: 227 VGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHVYDGFITL 274
>gi|33240398|ref|NP_875340.1| diaminopimelate epimerase [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|33237925|gb|AAP99992.1| Diaminopimelate epimerase [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
Length = 285
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 169/291 (58%), Gaps = 13/291 (4%)
Query: 78 FLHFVKYHGLGNDFILVDNR-NSTEPRITPEQAA---KLCDRNFGIGADGVIFAMPGVNG 133
+ F KY GLGNDFI++D+R +ST I + +C+R +G+GADG+I G
Sbjct: 3 IIKFNKYQGLGNDFIIIDDRKDSTVNNILTNDTSLVRNICNRKYGVGADGIILVQNSERG 62
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKV 193
+ M+IFNSDGS EMCGNG+RC +++ LN +F + T AG + + + +
Sbjct: 63 ANTKMQIFNSDGSIAEMCGNGIRCLIKYLYNESQLNEDINFIIETLAGNLDCYVLNGDHI 122
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+V+MG P + +PT+LS N + ++ + + + + + MGNPH V
Sbjct: 123 RVNMGSPSFEPKAIPTTLSPN-NLNIPEGTVTIKNENITMYGIGMGNPHMVII------- 174
Query: 254 LK-VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
LK ++ L L E+G FE + FP +TN FVE+++ +++ ++VWERG GATLACGTGACA
Sbjct: 175 LKSIEDLQLEELGRNFETDNRFPNKTNVHFVEVLNMNKILVKVWERGCGATLACGTGACA 234
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ L G + V LPGG L I+W + +YMTGPAE VF G + +
Sbjct: 235 CLAVTSLLGLTNNKSEVVLPGGSLFIDWLNTSDPLYMTGPAEFVFSGQLYI 285
>gi|254448956|ref|ZP_05062411.1| diaminopimelate epimerase [gamma proteobacterium HTCC5015]
gi|198261493|gb|EDY85783.1| diaminopimelate epimerase [gamma proteobacterium HTCC5015]
Length = 281
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 164/290 (56%), Gaps = 21/290 (7%)
Query: 81 FVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTM 138
F K HGLGNDF+++D R E ++P+Q ++ DR FG+G D ++ P D+
Sbjct: 5 FSKMHGLGNDFVVIDAIRQQVE--LSPDQVRRIADRRFGVGCDQLLLVERPESKSADFRY 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGK-QSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI+N+DGSE E CGNG RCF RF+ + + S + T G I ++ D +V+VDM
Sbjct: 63 RIYNADGSEVEQCGNGARCFGRFVVDQGLADASCASLKIETLGGPIEIQLLDGHQVQVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P P++L D LD G ++ VSMGNPH V L VD
Sbjct: 123 GVPRFD----PSALPFEADAEAAHYALDTAGQLLDIGAVSMGNPHAV---------LWVD 169
Query: 258 KLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
++ +AE+GP E H FP R N F + +S S++ +RV+ERGAG TLACGTGACA V
Sbjct: 170 EIQEAPVAELGPAIESHPRFPQRVNAGFAQCLSRSEIHLRVYERGAGETLACGTGACAAV 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
+ +G +R TV LPGG L+I W ++D + MTG A VF G++ L+
Sbjct: 230 AVGIRQGKLDREVTVHLPGGDLNIYWPDDDQSLMMTGDAITVFEGTIDLS 279
>gi|372269306|ref|ZP_09505354.1| diaminopimelate epimerase [Alteromonas sp. S89]
Length = 276
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 167/289 (57%), Gaps = 19/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HGLGNDF++VD + +++PE+ ++ DR+ GIG D ++ P D+
Sbjct: 3 LKFTKMHGLGNDFVMVDG-ITQRVKLSPEKVRQIADRHTGIGCDQLLLVEAPRNPDVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI+N+DGSE E CGNG RCFARF+ + L K+ V T AG++ ++Q+ +V VDM
Sbjct: 62 YRIYNADGSEVENCGNGARCFARFVRD-RRLTSKEHILVETAAGILELKVQEKDQVSVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSE---LDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+L+ S VP Q+ +++E LDV+G +NV VSMGNPH V
Sbjct: 121 GAPVLEPSAVPF-------QADIQAESYPLDVNGETYNVGAVSMGNPHAVLLVDD----- 168
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V K + +G E H FPAR N F++I + ++RV+ERG G T ACGTGACA +
Sbjct: 169 -VSKAPVDSLGAAIESHPRFPARVNVGFLQIEERGKARLRVFERGVGETRACGTGACAAM 227
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V+A L G + + LPGG L I W V MTGP V++G ++L
Sbjct: 228 VSARLRGLVDDEVQIALPGGTLTIHWPGPGEPVTMTGPTASVYHGQIVL 276
>gi|167585127|ref|ZP_02377515.1| diaminopimelate epimerase [Burkholderia ubonensis Bu]
Length = 289
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/292 (42%), Positives = 167/292 (57%), Gaps = 14/292 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D +S P +T Q L +R+FG+GAD ++ P V+G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYSSALPPLTEAQVRALANRHFGVGADQLLLVEKPTVDGADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + + L K+S V GLI +Q++G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVLD-KRLTDKRSVRVEVMKGLITLTMQENGEVVVDM 121
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + + VP L+ + LDV G ++ VSMGNPH V + +
Sbjct: 122 GAPVFEPAQVPFETAGLAGRPEGRDTLWPLDVGGATRWISTVSMGNPHAVQV-VDDAERY 180
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V LAE GP E H+ F R N F++I+S S++K+RV+ERGAG TLACGTGACA V
Sbjct: 181 PV----LAE-GPLIERHARFAQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAV 235
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLL 363
A + G + TV GG L I W ++E + M GPA VF G + L
Sbjct: 236 AAGIRRGLLDSPVTVHTHGGTLTISWDGARDEAAPLMMAGPAATVFEGEIDL 287
>gi|294678992|ref|YP_003579607.1| diaminopimelate epimerase [Rhodobacter capsulatus SB 1003]
gi|294477812|gb|ADE87200.1| diaminopimelate epimerase [Rhodobacter capsulatus SB 1003]
Length = 277
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/279 (43%), Positives = 162/279 (58%), Gaps = 24/279 (8%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F+K HGLGNDF+++D R+ P +TP A L DR+ G+G D + +P G D+T+
Sbjct: 11 LRFLKMHGLGNDFVVIDARSGENP-VTPALARALGDRHRGVGFDQLAVILP-AEGADFTL 68
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
+NSDGS+ CGN RC + + + +L GK T+ T G + E + DG V V+MG
Sbjct: 69 EFWNSDGSKAGACGNATRCVSDLM--MRDL-GKDRVTLTTARGRLSAERRADGLVSVNMG 125
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
PIL + +P + L + G + V MGNPHCV F ++ + V
Sbjct: 126 APILDPAAIPVAAD--------PLALPLTG---DPVAVGMGNPHCVFF-VEDAETADVSG 173
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
L GPK EHH +FP RTN EF +I P L+MRVWERGAG TLACG+G CA VAA
Sbjct: 174 L-----GPKIEHHPLFPERTNVEFASLIGPDHLRMRVWERGAGITLACGSGTCATAVAAH 228
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVF 357
L G RR VD+ GG L+I+W+E+ V+MTGP +VF
Sbjct: 229 LRGLTGRRVIVDVDGGRLEIDWREDG--VWMTGPTALVF 265
>gi|312137224|ref|YP_004004561.1| diaminopimelate epimerase [Methanothermus fervidus DSM 2088]
gi|311224943|gb|ADP77799.1| diaminopimelate epimerase [Methanothermus fervidus DSM 2088]
Length = 290
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/292 (41%), Positives = 169/292 (57%), Gaps = 25/292 (8%)
Query: 79 LHFVKYHGLGNDFILVDNRNS--TEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K H LGND+IL+D + R PE K+CDRNFG+G DGVIF N D
Sbjct: 6 ILFTKMHALGNDYILIDETRGEIVKEREKPEFVKKICDRNFGVGGDGVIFVSKSDN-LDI 64
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
RIFN+DGSE EMCGNG+RCFA+++ E + + K+ V T AG + ++
Sbjct: 65 KFRIFNADGSEAEMCGNGIRCFAKYVYE-KGILRKKRMKVETLAGEKILNLKTKNNLVES 123
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
+KVDMG K+ +P KD++ + ++ K ++ V++GNPH V F
Sbjct: 124 IKVDMGLATFKSEKIPVK---TKDKTFINKVCKLNDKKIKLSAVNVGNPHTVIF------ 174
Query: 253 NLKVDKL--NLAE-IGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
VD++ + AE IGP E+H +FP RTN FV++++P+++KM WERG G TLACGTG
Sbjct: 175 ---VDEVSRDYAEKIGPVIENHPIFPERTNVNFVKVLNPNEIKMITWERGVGITLACGTG 231
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHV--YMTGPAEVVFYG 359
A A + G + TV+LPGG L IE E++N + +M G A +VF G
Sbjct: 232 AVASTIVGRKLGKLNKEVTVNLPGGRLKIEIYEKNNKIGAFMEGKATMVFEG 283
>gi|386389904|ref|ZP_10074702.1| diaminopimelate epimerase [Haemophilus paraphrohaemolyticus HK411]
gi|385694344|gb|EIG24952.1| diaminopimelate epimerase [Haemophilus paraphrohaemolyticus HK411]
Length = 274
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 172/288 (59%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++D + +TP+ +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVIDGV-TQNVFLTPDIIRQLSDRHRGIGFDQLLLVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K + V T G ++ ++DDGKV+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKPNIHVSTAKGKMILSLKDDGKVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + VP + + + +++++L V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAQVPFTANKFEKNYILRTDLQT------VLCGVVSMGNPHCVL------QVEN 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+D + ++GP E+H FP R N F+++++ + +K+RV+ERGAG T ACG+GAC V
Sbjct: 167 IDTAPVLQLGPLLENHERFPERANIGFMQVLNRNHIKLRVFERGAGETQACGSGACGAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G + VDLPGG L IEW + +YMTG A ++ G + L
Sbjct: 227 VGIMQGVLNSKVQVDLPGGSLWIEWDGVGHPLYMTGDATHIYDGFIKL 274
>gi|251793384|ref|YP_003008112.1| diaminopimelate epimerase [Aggregatibacter aphrophilus NJ8700]
gi|422337464|ref|ZP_16418435.1| diaminopimelate epimerase [Aggregatibacter aphrophilus F0387]
gi|247534779|gb|ACS98025.1| diaminopimelate epimerase [Aggregatibacter aphrophilus NJ8700]
gi|353345176|gb|EHB89472.1| diaminopimelate epimerase [Aggregatibacter aphrophilus F0387]
Length = 274
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 170/290 (58%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVD--NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTD 135
+ F K HGLGNDF++VD +N P E +L DR+ GIG D ++ P + D
Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFP---TETIKRLADRHRGIGFDQLLVVEPPYDPELD 57
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V +++DG V+V
Sbjct: 58 FHYRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKKDIAVSTQKGKMVLSVKEDGNVRV 116
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQN 253
+MGEP+ + + +P + + ++++ + V C VSMGNPHCV Q
Sbjct: 117 NMGEPVWEPNKIPFIANKFEKNYILRTTVQ------TVLCGAVSMGNPHCVV------QV 164
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ N+ ++GP E+H FP R N F+++++ +K+RV+ERGAG T ACG+GACA
Sbjct: 165 EDIQTANVEQLGPLLENHERFPERVNAGFMQVVNRKHIKLRVYERGAGETQACGSGACAA 224
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ E + +YMTG A V+ G + L
Sbjct: 225 VAVGIMQGVLDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVIYL 274
>gi|16272691|ref|NP_438909.1| diaminopimelate epimerase [Haemophilus influenzae Rd KW20]
gi|68249347|ref|YP_248459.1| diaminopimelate epimerase [Haemophilus influenzae 86-028NP]
gi|145632103|ref|ZP_01787838.1| diaminopimelate epimerase [Haemophilus influenzae 3655]
gi|145638454|ref|ZP_01794064.1| diaminopimelate epimerase [Haemophilus influenzae PittII]
gi|145640834|ref|ZP_01796416.1| diaminopimelate epimerase [Haemophilus influenzae R3021]
gi|260579841|ref|ZP_05847671.1| diaminopimelate epimerase [Haemophilus influenzae RdAW]
gi|260583154|ref|ZP_05850934.1| diaminopimelate epimerase [Haemophilus influenzae NT127]
gi|319775309|ref|YP_004137797.1| diaminopimelate epimerase [Haemophilus influenzae F3047]
gi|329122695|ref|ZP_08251273.1| diaminopimelate epimerase [Haemophilus aegyptius ATCC 11116]
gi|1169225|sp|P44859.1|DAPF_HAEIN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase;
AltName: Full=PLP-Independent Amino Acid Racemases
gi|81336228|sp|Q4QME8.1|DAPF_HAEI8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|33356940|pdb|1GQZ|A Chain A, Refinement Of Haemophilus Influenzae Diaminopimelate
Epimerase At 1.7a
gi|109157880|pdb|2GKE|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex
With An Irreversible Inhibitor Ll-Azidap
gi|109157881|pdb|2GKJ|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex
With An Irreversible Inhibitor Dl-Azidap
gi|1573758|gb|AAC22409.1| diaminopimelate epimerase (dapF) [Haemophilus influenzae Rd KW20]
gi|68057546|gb|AAX87799.1| diaminopimelate epimerase [Haemophilus influenzae 86-028NP]
gi|144987010|gb|EDJ93540.1| diaminopimelate epimerase [Haemophilus influenzae 3655]
gi|145272783|gb|EDK12690.1| diaminopimelate epimerase [Haemophilus influenzae PittII]
gi|145274348|gb|EDK14212.1| diaminopimelate epimerase [Haemophilus influenzae 22.4-21]
gi|260093125|gb|EEW77058.1| diaminopimelate epimerase [Haemophilus influenzae RdAW]
gi|260093772|gb|EEW77680.1| diaminopimelate epimerase [Haemophilus influenzae NT127]
gi|309751589|gb|ADO81573.1| Diaminopimelate epimerase [Haemophilus influenzae R2866]
gi|317449900|emb|CBY86112.1| diaminopimelate epimerase [Haemophilus influenzae F3047]
gi|327472569|gb|EGF17999.1| diaminopimelate epimerase [Haemophilus aegyptius ATCC 11116]
Length = 274
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 168/288 (58%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
+ F K HGLGNDF++VD + TPE +L +R+ GIG D + I P D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ +V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E H FP R N F++II+ +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G VDLPGG L IEW + +YMTG A ++ G + L
Sbjct: 227 VGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274
>gi|92115228|ref|YP_575156.1| diaminopimelate epimerase [Chromohalobacter salexigens DSM 3043]
gi|122419111|sp|Q1QSV1.1|DAPF_CHRSD RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|91798318|gb|ABE60457.1| diaminopimelate epimerase [Chromohalobacter salexigens DSM 3043]
Length = 277
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 163/290 (56%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
LHF K HGLGNDF+++D + R+ E+ +L DR+ GIG D ++ P + D+
Sbjct: 2 LLHFTKMHGLGNDFVVID-LITQRARLDTERIRQLADRHVGIGFDQLLLVEPPRDPEMDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG+E E CGNG RCFARF+ + L K+ V T AG + ++DD +++VD
Sbjct: 61 RYRIFNADGNEVENCGNGARCFARFVRD-NRLTHKREIRVETQAGPLTLRVEDDERIRVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P VP A+ L+VDG W++ VSMGNPH V L+V
Sbjct: 120 MGVPRFAPEVVPFDAPADAPAHC----LEVDGETWDIGAVSMGNPHAV---------LRV 166
Query: 257 DKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + +A +GP E H FP N F++++S + ++RV+ERG+G TLACGTGACA
Sbjct: 167 DDVAQAPVARLGPLIERHPRFPRGVNVGFLQVVSRHEARLRVFERGSGETLACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + G E V LPGG L + W D + MTGPA VF G + L
Sbjct: 227 VAHGIRRGWLESPVDVHLPGGTLTLAWPAPDASLMMTGPATSVFEGRIAL 276
>gi|291615718|ref|YP_003518460.1| DapF [Pantoea ananatis LMG 20103]
gi|386017900|ref|YP_005936201.1| diaminopimelate epimerase DapF [Pantoea ananatis AJ13355]
gi|386081293|ref|YP_005994818.1| diaminopimelate epimerase DapF [Pantoea ananatis PA13]
gi|291150748|gb|ADD75332.1| DapF [Pantoea ananatis LMG 20103]
gi|327395983|dbj|BAK13405.1| diaminopimelate epimerase DapF [Pantoea ananatis AJ13355]
gi|354990474|gb|AER34598.1| diaminopimelate epimerase DapF [Pantoea ananatis PA13]
Length = 282
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 166/286 (58%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 9 MQFSKMHGLGNDFMVVDAV-TQNVFFSPELIRRLSDRHLGIGFDQLLVVEPPYDPDLDFH 67
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ +L+ L K V T AG +V + D V+V+M
Sbjct: 68 YRIFNADGSEVAQCGNGARCFARFV-QLKGLTNKSDIRVSTQAGRMVLSVTPDDLVRVNM 126
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP + VP ANK +++ + V + VSMGNPHCV + ++ K
Sbjct: 127 GEPNFEPQQVP--FRANKAENLYLLRVAEQTVMFG--AVSMGNPHCVI----QVESTKTA 178
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++ L +GP E H FP R N F+EIISP +++RV+ERGAG T ACG+GACA V
Sbjct: 179 QVEL--LGPVLESHERFPERVNVGFMEIISPEHIRLRVYERGAGETQACGSGACAAVACG 236
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G ++ VDLPGG L I WK +YMTGPA V+ G + L
Sbjct: 237 IQQGILSQKVRVDLPGGTLHIAWKGVGQPLYMTGPATHVYDGFIHL 282
>gi|333907106|ref|YP_004480692.1| diaminopimelate epimerase [Marinomonas posidonica IVIA-Po-181]
gi|333477112|gb|AEF53773.1| Diaminopimelate epimerase [Marinomonas posidonica IVIA-Po-181]
Length = 276
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/290 (43%), Positives = 164/290 (56%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF++VD S + Q +L DRN+GIG D ++ P N D+
Sbjct: 2 LLKFTKMHGLGNDFVVVDAV-SRKVFFNKSQIERLSDRNWGIGFDQLLVVEPPSNPDMDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RI+NSDGSE E CGNG RCFA+F+ + E L K+ V T G I + D+G V VD
Sbjct: 61 RYRIYNSDGSEVEHCGNGARCFAKFVLDRE-LTHKRVINVETKRGAIQLRVIDNGLVTVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P +D+P S N L VDG + +T VS+GNPH V LKV
Sbjct: 120 MGAPSFVPADLPFSAELNDGLY----PLMVDGDDYLITPVSVGNPHAV---------LKV 166
Query: 257 DKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D L + +G K E H FP++ N F+++++P+++ +RV+ERG G T ACGTGACA
Sbjct: 167 DTLQDEQVQNLGAKIESHECFPSKVNVGFMQVVNPAEINLRVFERGVGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VVA + +G + T L GG L IEW E + MTGPA VF G + L
Sbjct: 227 VVAGIKQGWLAPKVTAHLRGGDLHIEWAGEGEPILMTGPAAKVFEGQIYL 276
>gi|261867253|ref|YP_003255175.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|415767629|ref|ZP_11483301.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
D17P-2]
gi|416077713|ref|ZP_11586014.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype b str. SCC1398]
gi|416082521|ref|ZP_11586619.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype b str. I23C]
gi|416108526|ref|ZP_11591085.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype c str. SCC2302]
gi|444337676|ref|ZP_21151613.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype b str. SCC4092]
gi|444347602|ref|ZP_21155461.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype b str. S23A]
gi|261412585|gb|ACX81956.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|348003898|gb|EGY44449.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype b str. SCC1398]
gi|348004285|gb|EGY44806.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype c str. SCC2302]
gi|348010802|gb|EGY50817.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype b str. I23C]
gi|348658565|gb|EGY76133.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
D17P-2]
gi|443546484|gb|ELT56137.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype b str. SCC4092]
gi|443548429|gb|ELT57680.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype b str. S23A]
Length = 274
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 171/290 (58%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVD--NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTD 135
+ F K HGLGNDF++VD +N P E +L DR+ G+G D ++ P + D
Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNIYFP---TETIKRLADRHRGVGFDQLLVVEPPYDPELD 57
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G ++ +++DG V+V
Sbjct: 58 FHYRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKKDIAVSTQNGKMLLTVKEDGNVRV 116
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQN 253
+MGEPI + + +P + + + ++++E+ V C VSMGNPHCV Q
Sbjct: 117 NMGEPIWEPNKIPFTANKFEKNYILRTEIQT------VLCSAVSMGNPHCVV------QV 164
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ N+ ++GP E+H FP R N F+++++ +K+RV+ERG G T ACG+GACA
Sbjct: 165 EDIQTANVEQLGPLLENHERFPERVNAGFMQVVNRHHIKLRVYERGTGETQACGSGACAA 224
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ E + +YMTG A V+ G V L
Sbjct: 225 VAVGIMQGVLDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVVCL 274
>gi|24375790|ref|NP_719833.1| diaminopimelate epimerase DapF [Shewanella oneidensis MR-1]
gi|29839322|sp|Q8E9H5.1|DAPF_SHEON RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|24350738|gb|AAN57277.1| diaminopimelate epimerase DapF [Shewanella oneidensis MR-1]
Length = 275
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 165/290 (56%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PEQ +L DRNFG+G D ++ P + D+
Sbjct: 1 MIQFTKMHGLGNDFMVVDGI-TQNVFFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E E CGNG RCFARF+ + L K V T AG + ++ DG V V+
Sbjct: 60 HYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P+L+ S +P + ++++ + SMGNPHCV L V
Sbjct: 119 MGVPVLEPSQIPFKAKKAEKTYLLQTPQQT----FLCGAASMGNPHCV---------LDV 165
Query: 257 DKL---NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ + N+AEIG H FP N F+++++ +K+RV+ERGA TLACGTGACA
Sbjct: 166 EDVANANVAEIGALLTKHERFPRGVNVGFMQVVNAGHIKLRVYERGAAETLACGTGACAA 225
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VV ++G +++ VDLPGG L I W+ E ++MTGPA+ V+ G + L
Sbjct: 226 VVVGQIQGKLDQQVQVDLPGGSLTINWEGEGKPLWMTGPAQHVYDGQIQL 275
>gi|312963816|ref|ZP_07778287.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6]
gi|311281851|gb|EFQ60461.1| diaminopimelate epimerase [Pseudomonas fluorescens WH6]
Length = 276
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 131/290 (45%), Positives = 175/290 (60%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D S ITP+ A + DR+ G+G D ++ N D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHITPKHAKQWGDRHTGVGFDQLLLVEAPTNPEVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I++DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKSGVIELDIRNDGQISVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P S + LDV+G ++ VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFQAS----EQAASYALDVEGQSVDIAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ +N A E+GPK EHH FPAR N F+++I S+ ++RVWERGAG T ACGTGACA
Sbjct: 167 NDINNAPVHELGPKIEHHPRFPARVNVGFMQVIDRSRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVLMTGPASRVYEGQVRL 276
>gi|221201914|ref|ZP_03574951.1| diaminopimelate epimerase [Burkholderia multivorans CGD2M]
gi|221207580|ref|ZP_03580588.1| diaminopimelate epimerase [Burkholderia multivorans CGD2]
gi|421470665|ref|ZP_15919029.1| diaminopimelate epimerase [Burkholderia multivorans ATCC BAA-247]
gi|221172426|gb|EEE04865.1| diaminopimelate epimerase [Burkholderia multivorans CGD2]
gi|221178334|gb|EEE10744.1| diaminopimelate epimerase [Burkholderia multivorans CGD2M]
gi|400227208|gb|EJO57218.1| diaminopimelate epimerase [Burkholderia multivorans ATCC BAA-247]
Length = 289
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 121/292 (41%), Positives = 162/292 (55%), Gaps = 14/292 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D + T P +T Q L R+FGIGAD ++ P V+G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRTLPPLTAAQVRALASRHFGIGADQLLLVEKPTVDGADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+++ L K+S V GLI +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVSD-RGLTDKRSVRVQVMKGLITLTMQDNGEVVVDM 121
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ VP + L + L++ G ++ VSMGNPH V
Sbjct: 122 GAPVFAPEQVPFDASGLDGRTEGRDTLWPLEIGGRTRWISTVSMGNPHAVQVVDDAEAYP 181
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+D+ GP E H+ FP R N F++I+S S++K+RV+ERGAG TLACGTGACA V
Sbjct: 182 VLDE------GPLIERHARFPQRVNAGFMQIVSRSEVKLRVYERGAGETLACGTGACAAV 235
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLL 363
A + G + TV GG L I W ++E + M GPA VF G + L
Sbjct: 236 AAGIRRGLLDSPVTVHTHGGTLTIGWDGARDESAALMMAGPAATVFEGEIDL 287
>gi|23099809|ref|NP_693275.1| diaminopimelate epimerase [Oceanobacillus iheyensis HTE831]
gi|29839324|sp|Q8ENX2.1|DAPF_OCEIH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|22778040|dbj|BAC14310.1| diaminopimelate epimerase [Oceanobacillus iheyensis HTE831]
Length = 286
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 123/286 (43%), Positives = 168/286 (58%), Gaps = 18/286 (6%)
Query: 81 FVKYHGLGNDFILVDNRN-STEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMR 139
F K HGLGN+++ +D + + + ++ + A ++ D GIG+DG+I P + D MR
Sbjct: 5 FTKMHGLGNNYVYIDLFDYAIDEKLYHDLAIQISDVYTGIGSDGMILIHPTTDA-DVGMR 63
Query: 140 IFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KVKV 195
IFN DGSE + CGNG+RC A++ E + K+ F + T A ++ E+ D +V +
Sbjct: 64 IFNKDGSEGKSCGNGLRCTAKYAYENGIVTNKK-FHIQTKANIVEAEVSVDNNKVNQVTI 122
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
DMGEPIL +++P + N D VV V G +T VSMGNPH V F
Sbjct: 123 DMGEPILARNEIP--MMGNNDVKVVNEPFVVAGETQYITAVSMGNPHGVFFVDD------ 174
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
++K L +GP E FP N EF+E++SP++L RVWERG+G T ACGTGACA VV
Sbjct: 175 IEKAPLETLGPTIEKDMRFPESINVEFIEVVSPTELNFRVWERGSGITQACGTGACAAVV 234
Query: 316 AAVLEGHAERR--CTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
AA L + V L GG L+IEWK EDNHV+MTGPAEV+ G
Sbjct: 235 AATLNEKVTKSHPIVVHLAGGDLNIEWK-EDNHVWMTGPAEVIATG 279
>gi|117918848|ref|YP_868040.1| diaminopimelate epimerase [Shewanella sp. ANA-3]
gi|166225758|sp|A0KS65.1|DAPF_SHESA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|117611180|gb|ABK46634.1| diaminopimelate epimerase [Shewanella sp. ANA-3]
Length = 275
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 164/290 (56%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PEQ +L DRNFGIG D ++ P + D+
Sbjct: 1 MIQFTKMHGLGNDFMVVDGV-TQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E E CGNG RCFARF+ + L K V T AG + ++ DG V V+
Sbjct: 60 HYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P+L S +P + ++++ + SMGNPHCV L V
Sbjct: 119 MGVPVLDPSQIPFKAKKAEKTYLLQTPQQT----FLCGAASMGNPHCV---------LDV 165
Query: 257 DKL---NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ + N+AEIG H FP N F+++++ +K+RV+ERGA TLACGTGACA
Sbjct: 166 EDVANANVAEIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAA 225
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VV ++G +++ VDLPGG L I W+ E ++MTGPA+ V+ G + L
Sbjct: 226 VVVGQIQGKLDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275
>gi|113968736|ref|YP_732529.1| diaminopimelate epimerase [Shewanella sp. MR-4]
gi|114049120|ref|YP_739670.1| diaminopimelate epimerase [Shewanella sp. MR-7]
gi|122944336|sp|Q0HQJ2.1|DAPF_SHESR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|123130815|sp|Q0HN95.1|DAPF_SHESM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|113883420|gb|ABI37472.1| diaminopimelate epimerase [Shewanella sp. MR-4]
gi|113890562|gb|ABI44613.1| diaminopimelate epimerase [Shewanella sp. MR-7]
Length = 275
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 164/290 (56%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PEQ +L DRNFG+G D ++ P + D+
Sbjct: 1 MIQFTKMHGLGNDFMVVDGV-TQNVFFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E E CGNG RCFARF+ + L K V T AG + ++ DG V V+
Sbjct: 60 HYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P+L S +P + ++++ + SMGNPHCV L V
Sbjct: 119 MGVPVLDPSQIPFKAKKAEKTYLLQTSQQT----FLCGAASMGNPHCV---------LDV 165
Query: 257 DKL---NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ + N+AEIG H FP N F+++++ +K+RV+ERGA TLACGTGACA
Sbjct: 166 EDVANANVAEIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAA 225
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VV ++G +++ VDLPGG L I W+ E ++MTGPA+ V+ G + L
Sbjct: 226 VVVGQIQGKLDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275
>gi|387772183|ref|ZP_10128140.1| diaminopimelate epimerase [Haemophilus parahaemolyticus HK385]
gi|386907627|gb|EIJ72333.1| diaminopimelate epimerase [Haemophilus parahaemolyticus HK385]
Length = 274
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 173/288 (60%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++D + +TP+ +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVIDGV-TQNVFLTPDIIRQLSDRHRGIGFDQLLLVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K + V T G +V +++DGKV+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKPNIHVSTAKGKMVLSLKEDGKVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + VP + + + ++++ L V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAQVPFTANKFEKNYILRTHLQ------TVLCGVVSMGNPHCVL------QVEN 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+D + ++GP E+H FP R N F+++++ + +K+RV+ERGAG T ACG+GAC V
Sbjct: 167 IDTAPVLQLGPLLENHERFPERANIGFMQVLNRNHIKLRVFERGAGETQACGSGACGAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G + + VDLPGG L IEW+ + +YMTG A ++ G + L
Sbjct: 227 VGIMQGILDSKVQVDLPGGSLWIEWEGVGHPLYMTGDATHIYDGFIKL 274
>gi|124268429|ref|YP_001022433.1| diaminopimelate epimerase [Methylibium petroleiphilum PM1]
gi|166225730|sp|A2SKV9.1|DAPF_METPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|124261204|gb|ABM96198.1| diaminopimelate epimerase [Methylibium petroleiphilum PM1]
Length = 296
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 128/293 (43%), Positives = 163/293 (55%), Gaps = 12/293 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K G GNDF+++D + EP ++P Q L DR FG+GAD V I G D+
Sbjct: 3 LRFTKMQGAGNDFVVLDA--TREPLTLSPAQYRYLADRRFGVGADQVLIVGASDEPGIDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
T RI N+DGSE E CGNG RCF R++ E L K + V T G+I P DG+V VD
Sbjct: 61 TYRIVNADGSEVEQCGNGARCFVRYVRE-AGLTKKSAIRVRTAGGVIEPRWLVDGRVTVD 119
Query: 197 MGEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
MG P+ + + VP L + LD VSMGNPH V + G
Sbjct: 120 MGAPVFEPARVPFDAAGLQPRELNGFALWPLDAADRTVEAAVVSMGNPHAVMNVAQFGSG 179
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
VD+ +AE+GP E H+ FP R N F++++S + +K+RV+ERGAG TLACGTGACA
Sbjct: 180 -GVDEAPVAELGPLVERHTRFPQRVNAGFLQVLSDTHVKLRVYERGAGETLACGTGACAA 238
Query: 314 VVAAVLEG--HAERRCTVDLPGGPLDIEWK-EEDNHVYMTGPAEVVFYGSVLL 363
VVA + G A VD GG L IEW D V+MTGPAE V+ G + L
Sbjct: 239 VVAGIRLGWLRAGTPVDVDTRGGELTIEWAGRSDAPVWMTGPAESVYVGEIDL 291
>gi|91202681|emb|CAJ72320.1| similar to diaminopimelate epimerase [Candidatus Kuenenia
stuttgartiensis]
Length = 277
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 125/293 (42%), Positives = 174/293 (59%), Gaps = 24/293 (8%)
Query: 79 LHFVKYHGLGNDFILVDNRNST--EPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG+GND++ V+ + +P + K+ DR+FG+G+DG+I +P D
Sbjct: 1 MKFTKMHGIGNDYVYVNCFHEVVEDP---VGLSKKISDRHFGVGSDGLILILPS-EIADC 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
MRIFN+DGSE +MCGNG+RC A+++ + L K TV T AG+ E+ +
Sbjct: 57 KMRIFNADGSEAQMCGNGIRCVAKYVYD-HALVRKNPLTVETLAGIKTIELYTKNERVCS 115
Query: 193 VKVDMGEPILKASDVPTSLSANK--DQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKE 250
+V+MG P L ++P + + D+ +V +E + VTCVSMGNPHCV F
Sbjct: 116 ARVNMGRPKLMRPEIPMVGAETQVVDEMLVLNE----NTSFRVTCVSMGNPHCVIFV--- 168
Query: 251 GQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
+LK +L++ + G EHH VFP RTN FV++ P ++ M WERG+G TLACGTGA
Sbjct: 169 -DDLK--QLHIEKDGKAIEHHRVFPERTNVHFVKVHHPGEVTMVTWERGSGITLACGTGA 225
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
AV VA VL ER+ LPGG L++EW E++N VYMTG A VF G LL
Sbjct: 226 SAVCVAGVLNNLTERKLLAHLPGGDLELEWVEDEN-VYMTGAAAEVFTGEWLL 277
>gi|378769217|ref|YP_005197692.1| diaminopimelate epimerase [Pantoea ananatis LMG 5342]
gi|365188705|emb|CCF11655.1| Diaminopimelate epimerase [Pantoea ananatis LMG 5342]
Length = 274
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 166/286 (58%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPELIRRLSDRHLGIGFDQLLVVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ +L+ L K V T AG +V + D V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-QLKGLTNKSDIRVSTQAGRMVLSVTPDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP + VP ANK +++ + V + VSMGNPHCV + ++ K
Sbjct: 119 GEPNFEPQQVP--FRANKAENLYLLRVAEQTVMFG--AVSMGNPHCVI----QVESTKTA 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++ L +GP E H FP R N F+EIISP +++RV+ERGAG T ACG+GACA V
Sbjct: 171 QVEL--LGPVLESHERFPERVNVGFMEIISPEHIRLRVYERGAGETQACGSGACAAVACG 228
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G ++ VDLPGG L I WK +YMTGPA V+ G + L
Sbjct: 229 IQQGILSQKVRVDLPGGTLHIAWKGVGQPLYMTGPATHVYDGFIHL 274
>gi|442804286|ref|YP_007372435.1| carbamoyl-phosphate synthase large chain [Clostridium stercorarium
subsp. stercorarium DSM 8532]
gi|442740136|gb|AGC67825.1| carbamoyl-phosphate synthase large chain [Clostridium stercorarium
subsp. stercorarium DSM 8532]
Length = 1348
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 188/336 (55%), Gaps = 29/336 (8%)
Query: 42 LTLKVPSFRVSASSMS---SIHAPESASRTSFLD----RRESGFLHFVKYHGLGNDFILV 94
++L +P ++M+ S+ + S T +D R E + F K GND+I +
Sbjct: 1028 VSLGIPCLTSVDTAMALADSLLSRYSEINTELVDIRNMRTERLQIRFTKMQSAGNDYIYI 1087
Query: 95 DNRNSTEPRITPEQ-AAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGN 153
D P +PE + L DR++G+G DGV+ + D MR+FN DGSE M GN
Sbjct: 1088 DCFEQPVP--SPESLSVYLSDRHYGVGGDGVVLIYRS-DIADAKMRMFNMDGSEGGMSGN 1144
Query: 154 GVRCFARFIAELENLNGKQSFTVHTGAGL-IVPEIQDDGK---VKVDMGEPILKASDVPT 209
+RC +++ +++ + K++ + T +G+ + I DGK V VDMG P LK +P
Sbjct: 1145 AIRCVGKYLYDIKGIR-KKNLKIETISGVKTLFLITKDGKAARVSVDMGRPELKPERIPV 1203
Query: 210 SLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFE 269
S N V+ L V ++ VTC+SMGNPHCV F VD L+L IGP FE
Sbjct: 1204 KQSEN---MVIAYPLQVGDTEYEVTCLSMGNPHCVVFQKN------VDILDLETIGPLFE 1254
Query: 270 HHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAE--RRC 327
+H FP R NTEFV+I+ +K+RVWERG G T+ACGTGACA VVAA L G + +
Sbjct: 1255 NHQFFPERVNTEFVQILDEKTIKIRVWERGNGETMACGTGACAAVVAATLNGFLQKGKDI 1314
Query: 328 TVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + GG + + + EE V +TG AE+VF+G+VL+
Sbjct: 1315 RVIVKGGEVTVNYSEE--TVILTGDAEIVFHGTVLI 1348
>gi|342218803|ref|ZP_08711406.1| diaminopimelate epimerase [Megasphaera sp. UPII 135-E]
gi|341588750|gb|EGS32125.1| diaminopimelate epimerase [Megasphaera sp. UPII 135-E]
Length = 257
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/258 (45%), Positives = 162/258 (62%), Gaps = 16/258 (6%)
Query: 107 EQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELE 166
+ A LCDR+ GIGADG+I +P N D MRI N+DGSE EMCGNG+RCFA+++ +
Sbjct: 7 QVAITLCDRHTGIGADGIIVIVPS-NVADIRMRIINADGSEAEMCGNGIRCFAKYVYD-N 64
Query: 167 NLNGKQSFTVHTGAGLIVPEI--QDDGKVK---VDMGEPILKASDVPTSLSANKDQSVVK 221
K+ FTV T AG++ P++ +DGKV ++MG+P ++ +P + K VV
Sbjct: 65 GFISKKEFTVETLAGIMKPKVIVGEDGKVSLVTINMGKPYMEREQIPMNGPEGK---VVN 121
Query: 222 SELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTE 281
L +DG + +T + MG PH +T+ K+ V+K++L +GPKFE + VFP +TN
Sbjct: 122 EPLIIDGDTYYITSILMGVPHTMTY-VKD-----VEKVDLLTLGPKFETNPVFPKKTNMN 175
Query: 282 FVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWK 341
FV++I +K+ WERGAGATLACGTG+CA V + L G R V L G L IE+
Sbjct: 176 FVQVIDDHTIKVHTWERGAGATLACGTGSCACAVGSYLNGFTGRSVDVQLYLGTLHIEYN 235
Query: 342 EEDNHVYMTGPAEVVFYG 359
E+D +VYMTGPA V F G
Sbjct: 236 EDDGNVYMTGPAAVSFVG 253
>gi|416989017|ref|ZP_11938642.1| diaminopimelate epimerase [Burkholderia sp. TJI49]
gi|325518791|gb|EGC98379.1| diaminopimelate epimerase [Burkholderia sp. TJI49]
Length = 289
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 161/293 (54%), Gaps = 14/293 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D + P +T Q L +R+FGIGAD ++ P V+G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L ++S V GLI +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVND-RGLTDRRSVRVQVMKGLITLTMQDNGEVVVDM 121
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + VP L + LDV G +T VSMGNPH V
Sbjct: 122 GAPVFAPAQVPFDAAGLEGRAEGRDTLWPLDVGGRTRWITTVSMGNPHAVQVVDD----- 176
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ + E GP E H+ FP R N F++I+S ++K+RV+ERGAG TLACGTGACA V
Sbjct: 177 -AEAYPVLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAV 235
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLLN 364
A + G + TV GG L I W ++E + M GPA VF G + L+
Sbjct: 236 AAGIRRGLLDSPVTVHTHGGTLTISWDGARDETAALMMAGPATTVFEGEIDLH 288
>gi|257465051|ref|ZP_05629422.1| diaminopimelate epimerase [Actinobacillus minor 202]
gi|257450711|gb|EEV24754.1| diaminopimelate epimerase [Actinobacillus minor 202]
Length = 274
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 174/288 (60%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
+ F K HGLGNDF++VD + +T E KL DR+ GIG D ++ P D+
Sbjct: 1 MQFSKMHGLGNDFMVVDGV-TQNVFLTQEIIQKLADRHRGIGFDQLLLVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T G +V ++++G+V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKQDIHVSTAKGKMVLSLKENGQVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++ L V C VSMGNPHCV + +++K
Sbjct: 119 GEPIWEPAQIPFTANKFEKNYILRTSLQ------TVLCGVVSMGNPHCVL----QVEDIK 168
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+N E+GP E+H FP R N F+++I+ + +K+RV+ERGAG T ACG+GAC V
Sbjct: 169 TAPVN--ELGPLLENHERFPERANIGFMQVINRNHIKLRVFERGAGETQACGSGACGAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G + + VDLPGG L IEW+ + +YMTG A ++ G V L
Sbjct: 227 VGIMQGLLDSKVQVDLPGGSLMIEWEGVGHPLYMTGDATHIYDGFVTL 274
>gi|303229859|ref|ZP_07316636.1| diaminopimelate epimerase [Veillonella atypica ACS-134-V-Col7a]
gi|429759814|ref|ZP_19292309.1| diaminopimelate epimerase [Veillonella atypica KON]
gi|302515489|gb|EFL57454.1| diaminopimelate epimerase [Veillonella atypica ACS-134-V-Col7a]
gi|429179034|gb|EKY20296.1| diaminopimelate epimerase [Veillonella atypica KON]
Length = 277
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 166/286 (58%), Gaps = 23/286 (8%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ K HGLGNDFIL + T + A +LCDR GIGADG++ +P N D M
Sbjct: 1 MKLTKMHGLGNDFILFSDSQGANKDYT-DLAIRLCDRRTGIGADGLVIVVPS-NTCDVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KVK 194
RI NSDGSE EMCGNG+RCFA++ E + K +FT+ T AG++ P + + +V
Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYAYEHGEIT-KDTFTIETLAGVMKPTLTIENGIVTQVT 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG+P + D+P +++ +K V+ +LDV+G V+ V +G PH F
Sbjct: 118 VDMGKPFFNSKDIPMNVTMDK---VIDVDLDVNGETVTVSSVLLGVPHTEVF-------- 166
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
VD + A + GP E H FP+ TN +VE+++ +K+R WERGAGATLACGTG+C
Sbjct: 167 -VDDITKAPVTTQGPILEKHDAFPSNTNVNYVEVVNDHHIKVRTWERGAGATLACGTGSC 225
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVF 357
A V + +G R V+L G L I + ED V MTGPAE VF
Sbjct: 226 ASAVMSHKKGLTGREVDVELYLGTLHISYL-EDGTVLMTGPAEEVF 270
>gi|307257602|ref|ZP_07539362.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|306863905|gb|EFM95828.1| Diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
Length = 279
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 173/291 (59%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++D + +T E KL DR+ G+G D ++ P + D+
Sbjct: 6 MQFSKMHGLGNDFMVIDGV-TQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFH 64
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T G +V ++D+ KV+V+M
Sbjct: 65 YRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNM 123
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
G PI + + VP + + + +++++L V C VSMGNPHCV L+
Sbjct: 124 GGPIWEPAQVPFTANKFEKNYILRTDLQT------VLCGVVSMGNPHCV---------LQ 168
Query: 256 VDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ +NL E+GP E+H FP R N F+++++ + +K+RV+ERGAG T ACG+GAC
Sbjct: 169 VEDINLTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACG 228
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ + +YMTG A ++ G + L
Sbjct: 229 AVAVGIMQGVLDNNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 279
>gi|425064423|ref|ZP_18467548.1| Diaminopimelate epimerase [Pasteurella multocida subsp. gallicida
X73]
gi|404381173|gb|EJZ77656.1| Diaminopimelate epimerase [Pasteurella multocida subsp. gallicida
X73]
Length = 274
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 168/288 (58%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFVVVDAI-TQNLYFSPETIKRLADRHRGIGFDQMLIVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G ++ I+DDG ++++M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTDKKDIAVSTQTGKMILSIKDDGMIRINM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++ + V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTSIQ------TVLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E+H FP R N F+++I +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IQTANVEQLGPLLENHERFPERVNAGFMQVIHRGHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V++G + + VDL GG L IEW+ ++MTG A V+ G + L
Sbjct: 227 VGVMQGLLDSKVQVDLLGGSLIIEWEGVGKPLFMTGDATHVYDGVIRL 274
>gi|145630493|ref|ZP_01786273.1| diaminopimelate epimerase [Haemophilus influenzae R3021]
gi|144983883|gb|EDJ91325.1| diaminopimelate epimerase [Haemophilus influenzae R3021]
Length = 274
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 168/288 (58%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
+ F K HGLGNDF++VD + TPE +L +R+ GIG D + I P D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ +V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E H FP R N F++II+ +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G VDLPGG L IEW + +YMTG A ++ G + L
Sbjct: 227 VGIMQGLLNNNVQVDLPGGLLMIEWNGVGHPLYMTGEATHIYDGFITL 274
>gi|415941693|ref|ZP_11555801.1| Diaminopimelate epimerase [Herbaspirillum frisingense GSF30]
gi|407758994|gb|EKF68749.1| Diaminopimelate epimerase [Herbaspirillum frisingense GSF30]
Length = 287
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 122/292 (41%), Positives = 161/292 (55%), Gaps = 18/292 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HG GNDF+++D N +TP Q + DR FGIGAD ++ G D+
Sbjct: 3 IKFTKMHGAGNDFVVLDAVNQA-ISLTPAQWQFIADRRFGIGADQMLVVEKAQGAGIDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI+N+DG E E CGNG R F RF+ E + L K++ V T +G+I P ++DDG++ VDM
Sbjct: 62 YRIYNADGGEVEQCGNGARAFVRFVTE-KGLTDKRAIRVETMSGVIEPRLEDDGQITVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSEL---DVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G PIL +DVP + +S + L DV G ++ VSMGNPH V
Sbjct: 121 GAPILTPADVPFDSHGLQHRSEAEDNLWPLDVAGKTTWISVVSMGNPHAVQL-------- 172
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
VD A + GP EHH FP R N F++++ + +RV+ERGAG TLACGTGAC
Sbjct: 173 -VDDSEAAPVLTDGPLIEHHPRFPKRVNAGFMQVVDRHHINLRVYERGAGETLACGTGAC 231
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A VVA + G + V GG L+I W V MTGPA VF G + L
Sbjct: 232 AAVVAGIRRGLLDSPVAVQTHGGVLNIAWAGPGEPVMMTGPAVTVFEGEIDL 283
>gi|165976961|ref|YP_001652554.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|229807484|sp|B0BRC5.1|DAPF_ACTPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|165877062|gb|ABY70110.1| diaminopimelate epimerase [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
Length = 274
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 173/291 (59%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++D + +T E KL DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVIDGV-TQNVYLTEEVIRKLADRHRGVGFDQLLLVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T G +V ++D+ KV+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKQDIHVSTAKGKMVLTLKDEEKVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + VP + + + +++++L V C VSMGNPHCV L+
Sbjct: 119 GEPIWEPAQVPFTANKFEKNYILRTDLQT------VLCGVVSMGNPHCV---------LQ 163
Query: 256 VDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ +NL E+GP E+H FP R N F+++++ + +K+RV+ERGAG T ACG+GAC
Sbjct: 164 VEDINLTPVNELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACG 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDL GG L IEW+ + +YMTG A ++ G + L
Sbjct: 224 AVAVGIMQGVLDNNVQVDLSGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274
>gi|339483029|ref|YP_004694815.1| Diaminopimelate epimerase [Nitrosomonas sp. Is79A3]
gi|338805174|gb|AEJ01416.1| Diaminopimelate epimerase [Nitrosomonas sp. Is79A3]
Length = 275
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 115/285 (40%), Positives = 164/285 (57%), Gaps = 12/285 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K GLGNDF+++D N + +Q L DR+FGIG D ++ D+
Sbjct: 3 LKFTKMQGLGNDFVVLDGINQP-VNLDQQQIRLLADRHFGIGCDQLLLVEKATGQADFRY 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RIFN+DGSE E CGNG RCF R++ + L K + T +G+I P+++ DG V V+MG
Sbjct: 62 RIFNADGSEVEQCGNGARCFVRYVHD-HGLTQKNEIRIETLSGVISPKLEIDGNVTVNMG 120
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
+PI + ++P +++ + +L++ G ++ +SMGNPH V + +N VD
Sbjct: 121 KPIFEPEEIPFV----AEKTALTYQLEIQGKPVTISALSMGNPHAVRV-VQNIENAPVDT 175
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
G E H FP R N +V++I S +K+RV+ERGAG TLACGTGACA VVA V
Sbjct: 176 E-----GALIETHPRFPKRVNVGYVQVIDRSHIKLRVFERGAGETLACGTGACAAVVAGV 230
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+G + + V GG L I W+ +D V+MTGPA VF G + L
Sbjct: 231 NQGLLDSQVIVSTRGGELTISWQGQDEPVWMTGPAVTVFEGEINL 275
>gi|431928836|ref|YP_007241870.1| diaminopimelate epimerase [Pseudomonas stutzeri RCH2]
gi|431827123|gb|AGA88240.1| diaminopimelate epimerase [Pseudomonas stutzeri RCH2]
Length = 276
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 132/290 (45%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ G+G D ++ P N D+
Sbjct: 2 LLRFTKMHGLGNDFMVID-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I +I+ DG+++VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVVD-KRLTVKRKIKVETKGGIIELDIRPDGQIRVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L VP + +Q + L+VDG + + VSMGNPH V L+V
Sbjct: 120 MGPPRL----VPAEIPFQAEQEALCYPLEVDGQRVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A E+GPK EHH FP R N F++I+ Q ++RVWERGAG T ACGTGACA
Sbjct: 167 DSVEQAPVHELGPKIEHHPRFPQRVNVGFLQIVDRRQARLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA VF G V L
Sbjct: 227 AVAAIRQGWMDSPVQIDLPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276
>gi|254188135|ref|ZP_04894647.1| diaminopimelate epimerase [Burkholderia pseudomallei Pasteur 52237]
gi|157935815|gb|EDO91485.1| diaminopimelate epimerase [Burkholderia pseudomallei Pasteur 52237]
Length = 289
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 162/293 (55%), Gaps = 16/293 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D P +T Q L DR+FGIGAD ++ P V+G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ E L GK S V G+I +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRE-HGLTGKASVRVEVKHGVITLTMQDNGEVVVDM 121
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTF-GTKEGQN 253
G P+ + + VP + L ++ + L V+GV ++ VSMGNPH V E
Sbjct: 122 GAPVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVDDAEAFA 181
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
++VD GP E FP R N F++I+S ++ +RV+ERGAG TLACGTGACA
Sbjct: 182 VRVD-------GPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAA 234
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWK---EEDNHVYMTGPAEVVFYGSVLL 363
V A + G + TV GG L I W +E + M GPA VF G + L
Sbjct: 235 VAAGIRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIEL 287
>gi|365833959|ref|ZP_09375410.1| diaminopimelate epimerase [Hafnia alvei ATCC 51873]
gi|364570608|gb|EHM48212.1| diaminopimelate epimerase [Hafnia alvei ATCC 51873]
Length = 274
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 167/291 (57%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVYFSPELIRRLSDRHNGVGFDQMLIVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V ++ DD V V+M
Sbjct: 60 YRIFNADGSEVGQCGNGARCFARFV-RLKGLTNKREIRVSTQNGRMVLKVSDDELVTVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + S +P + ++++ + + C VSMGNPHCV L+
Sbjct: 119 GEPIFEPSKIPFKAVKAEKTYIMRA------AEHTILCGAVSMGNPHCV---------LQ 163
Query: 256 VDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A IGP E H FP R N F+++I+ +Q+K+RV+ERGAG T ACG+GACA
Sbjct: 164 VDDVETALVETIGPVLESHERFPERVNVGFMQVINRNQIKLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G + VDLPGG L I W DN ++MTGPA V+ G + L
Sbjct: 224 AVAVGIQQGLLDENVQVDLPGGRLQIRWNGPDNPLFMTGPATHVYDGFIHL 274
>gi|329957955|ref|ZP_08298387.1| diaminopimelate epimerase [Bacteroides clarus YIT 12056]
gi|328522104|gb|EGF49220.1| diaminopimelate epimerase [Bacteroides clarus YIT 12056]
Length = 284
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 168/288 (58%), Gaps = 19/288 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDR-NFGIGADGVIFAMPGVNGTDYT 137
+ F K HG GND+I VD + P PE+ +K + GIG+DG++ + + D++
Sbjct: 5 IKFTKMHGAGNDYIYVDT--TRYPIENPEKLSKKWSAPHTGIGSDGLVL-IGRSDKADFS 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK----V 193
MRIFN+DGSE +MCGN RC +++ + + L K T+ T +G+ + ++ G V
Sbjct: 62 MRIFNADGSEAKMCGNASRCIGKYLYDYK-LTSKTEITLDTLSGIKILKLHATGDKVDTV 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG P SD P + + + + +++DG+++ T VSMGNPH V F
Sbjct: 121 TVDMGIP----SDEPVNYDGKGSKPMTEHPIEIDGIRYTGTTVSMGNPHLVIFVND---- 172
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ K +L+ IGPK E+H +FP R N EF +++ +++MRVWERG+G T ACGTGACA
Sbjct: 173 --ITKADLSSIGPKLENHPLFPDRINVEFAQVLEEGKIRMRVWERGSGVTQACGTGACAT 230
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VAA L G A R+ + + GG L IEW HV+MTG A VF G +
Sbjct: 231 AVAAFLTGRAGRKSIIVMDGGTLTIEWDIATKHVFMTGEATKVFEGEM 278
>gi|123968506|ref|YP_001009364.1| diaminopimelate epimerase [Prochlorococcus marinus str. AS9601]
gi|123198616|gb|ABM70257.1| Diaminopimelate epimerase [Prochlorococcus marinus str. AS9601]
Length = 286
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 172/293 (58%), Gaps = 17/293 (5%)
Query: 79 LHFVKYHGLGNDFILVDNR------NSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN 132
+ F KY G GNDF+++D+R N +I K+C+R FG+GADGVIF
Sbjct: 4 ISFEKYQGNGNDFVIIDSRGNELYKNYKTNKIF--DIKKICNRQFGVGADGVIFIEEPNE 61
Query: 133 GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ-SFTVHTGAGLIVPEIQDDG 191
M IFNSDGSE +MCGNG+RC ++ +++N + + + T AGL + + +D
Sbjct: 62 DNYAKMIIFNSDGSEAQMCGNGIRCLVEYLHVNDSMNNENIEYKIETKAGLKIAKYIND- 120
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
++ V MG PIL+ ++PT++ K S+ E V MGNPH + F K+
Sbjct: 121 EITVKMGVPILEGQNIPTTIEK-KINSIPSHEFIEKDFSNMGYAVGMGNPHLIFF-VKD- 177
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
++ + L+ +GP FE + +FP +TN F +I++ +K++VWERGAG TLACGTGAC
Sbjct: 178 ----IESIVLSRLGPIFEKNELFPEKTNVHFCQILNRDNIKVKVWERGAGPTLACGTGAC 233
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
A+ VAA G + V LPGG L I+W E+D V MTG A+ VF GS+L+N
Sbjct: 234 AIHVAAYKLGLCNSQTIVTLPGGNLKIDWSEDDCEVMMTGNAKKVFSGSILVN 286
>gi|384208427|ref|YP_005594147.1| diaminopimelate epimerase [Brachyspira intermedia PWS/A]
gi|343386077|gb|AEM21567.1| Diaminopimelate epimerase [Brachyspira intermedia PWS/A]
Length = 279
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 172/293 (58%), Gaps = 24/293 (8%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAK----LCDRNFGIGADGVIFAMPGVNGT 134
L F K HG+GND+I V N + + TPE A+K L +RN+ IGADG+I MP +
Sbjct: 3 LSFTKMHGIGNDYIYV---NCFKEKFTPEDASKYSPILSNRNYSIGADGIILIMPS-DKA 58
Query: 135 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE--IQDD-- 190
D MR+FN+DGSE EMCGNG+RC A+++ + + ++ + T G++ I++D
Sbjct: 59 DAKMRMFNADGSESEMCGNGIRCVAKYVYD-KGISKNNPLKIETLRGILEANLFIENDEV 117
Query: 191 GKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKE 250
KV+++M PIL+ +PT++ N ++ + +G + T VSMGNPH V F
Sbjct: 118 DKVEINMSSPILEGLKIPTTIDKN---PIIDEPITFNGKTYYFTAVSMGNPHAVIFMDN- 173
Query: 251 GQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
+D L++ IG E++S+FP RTN EFVEII+ ++K R WERG+G TLACGTGA
Sbjct: 174 -----IDDLDINSIGSYIENNSIFPNRTNVEFVEIINRGEVKQRTWERGSGETLACGTGA 228
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
AV VA + + L GG L + + E+N V+M G A F G VLL
Sbjct: 229 SAVCVAGFISKRTDNIILNHLLGGDLVLRY--ENNSVFMKGEARYSFEGKVLL 279
>gi|157960207|ref|YP_001500241.1| diaminopimelate epimerase [Shewanella pealeana ATCC 700345]
gi|157845207|gb|ABV85706.1| Diaminopimelate epimerase [Shewanella pealeana ATCC 700345]
Length = 278
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 118/286 (41%), Positives = 163/286 (56%), Gaps = 15/286 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +P+Q +L DRNFG+G D ++ P + D+
Sbjct: 4 LIQFTKMHGLGNDFMVVDGV-TQNVFFSPDQIKRLADRNFGVGFDQLLLVEPPYDPDLDF 62
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + L K V T +G I ++ DGKV V+
Sbjct: 63 HYRIFNADGSEVEQCGNGARCFARFVRN-KGLTHKHKIRVSTSSGKITLRLERDGKVTVN 121
Query: 197 MGEPILKASDVP-TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
MG P L+ +P T+ K ++ S + VSMGNPHCV +
Sbjct: 122 MGIPALEPGKIPFTAKKVEKTYLLMASS-----GTYLCGAVSMGNPHCVI------EVED 170
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
V ++ IG + +H FP N F+++++ +K+RV+ERGA TLACGTGACA VV
Sbjct: 171 VAATDVDTIGGELTNHERFPKGVNVGFMQVLNSGHIKLRVYERGAAETLACGTGACAAVV 230
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+L+G +R VDLPGG L I W E ++MTGPAE V+ G +
Sbjct: 231 VGILQGKLDRNVQVDLPGGSLMINWDGEGKPLWMTGPAEHVYDGQI 276
>gi|433655130|ref|YP_007298838.1| diaminopimelate epimerase [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293319|gb|AGB19141.1| diaminopimelate epimerase [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 277
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 170/290 (58%), Gaps = 23/290 (7%)
Query: 79 LHFVKYHGLGNDFILVDN--RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTD 135
+ F K +GLGNDFI+++N N + I A KLCDR+FGIGADG++ P G+ D
Sbjct: 1 MKFTKMNGLGNDFIVLENLENNVYDYDIL---ARKLCDRHFGIGADGLLIVEPSGI--AD 55
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDD--G 191
MRI NSDGSE EMCGNG RCFA+++ E + K +V T +G+I+PE+ +DD
Sbjct: 56 IKMRIINSDGSEAEMCGNGARCFAKYVYE-NGIVKKDKMSVETLSGIIMPELIFKDDVVE 114
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
KVKV MG PI + +P +S ++ + +DG + VT + +G PH + F
Sbjct: 115 KVKVHMGSPIFRPDMIPVKTDK---KSFIEETIKIDGRSYIVTSLLVGVPHTIIFVNSID 171
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+N+ + IGP E +FP TN +FV++ S + +R WERGAG TLACGTGAC
Sbjct: 172 ENM------ILNIGPLIEKLQIFPRGTNVDFVKVEDDSNITVRTWERGAGLTLACGTGAC 225
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
A VA+ L +R V G L IEW DN++Y+TG AE VF G +
Sbjct: 226 ASAVASALTEKTKRNVYVHFKKGDLYIEWL-LDNNIYLTGIAEEVFTGEI 274
>gi|78779296|ref|YP_397408.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9312]
gi|78712795|gb|ABB49972.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9312]
Length = 286
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 173/293 (59%), Gaps = 17/293 (5%)
Query: 79 LHFVKYHGLGNDFILVDNR------NSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN 132
++F KY G GNDF+++D+R N +I ++C+R FGIGADGVIF
Sbjct: 4 INFEKYQGNGNDFVVIDSRGNDLYKNYKSNKIF--DIKQICNRQFGIGADGVIFIEEPNE 61
Query: 133 GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ-SFTVHTGAGLIVPEIQDDG 191
M IFNSDGSE +MCGNG+RC ++ +++N K + + T AGL + + +D
Sbjct: 62 DNYAKMIIFNSDGSEAQMCGNGIRCLVEYLHVNDSMNNKNIEYKIETKAGLKIAKYIND- 120
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
++ V MG PIL++ ++PT++ K S+ E V MGNPH + F K+
Sbjct: 121 EITVKMGVPILESQNIPTTIEK-KINSIPSHEFIEKNFNNMGYAVGMGNPHLIFF-VKD- 177
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
++ + L +GP FE + +FP +TN F +II+ +K++VWERGAG TLACGTGAC
Sbjct: 178 ----IESIVLYRLGPIFEKNELFPEKTNVHFCQIINRDNIKVKVWERGAGPTLACGTGAC 233
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
A+ VAA G + V LPGG L I+W ++D V MTG A+ VF GS+L+N
Sbjct: 234 AIHVAAYKLGLCNPQTIVTLPGGNLKIDWSKDDFEVMMTGNAKKVFSGSMLVN 286
>gi|431932536|ref|YP_007245582.1| diaminopimelate epimerase [Thioflavicoccus mobilis 8321]
gi|431830839|gb|AGA91952.1| diaminopimelate epimerase [Thioflavicoccus mobilis 8321]
Length = 275
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 163/286 (56%), Gaps = 15/286 (5%)
Query: 80 HFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
F K HGLGNDF+++D+ R S E + P Q L DR+FGIG D V+ P G D+
Sbjct: 3 RFTKMHGLGNDFVVLDSVRQSLE--LAPAQIRALADRHFGIGCDQVLVVEPPRRPGADFF 60
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ + + L K+ TV T G + DG+V+VDM
Sbjct: 61 YRIFNADGSESGQCGNGARCFARFVRD-QGLTDKERLTVDTRDGTLELAFLPDGQVRVDM 119
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L+ ++P +A V+ + + VS+GNPH VT VD
Sbjct: 120 GAPRLEPREIPFIAAARAGVYVLPLATE----TLAIGAVSLGNPHAVTLVED------VD 169
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+AE+GP+ H FP N F+++++ +++RV+ERG G TLACG+GACA VV A
Sbjct: 170 SAPVAELGPQVARHPDFPEGVNVGFLQVLAADLVRLRVFERGVGETLACGSGACAAVVCA 229
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
L G + R V+LPGG L IEW V+MTGPA VF G + L
Sbjct: 230 RLWGLLDERVQVELPGGTLTIEWAGGTAPVWMTGPAVRVFEGEIAL 275
>gi|402701241|ref|ZP_10849220.1| diaminopimelate epimerase [Pseudomonas fragi A22]
Length = 276
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 133/290 (45%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ G+G D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGVGFDQLLLVEAPSNPEVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ F V T G+I ++ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTTKRQFKVETKGGIIELNVRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L VP + D + ELDVDG + + VSMGNPH V L+V
Sbjct: 120 MGPPRL----VPEEIPFIADAQALSYELDVDGQRVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A E+GPK EHH FPAR N F+ +I + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINAAPVHELGPKIEHHPRFPARVNVGFLHVIDRQRGQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLILDLPGGRLSIEWAGPGHSVIMTGPAMRVYEGQVRL 276
>gi|163748704|ref|ZP_02155957.1| diaminopimelate epimerase [Shewanella benthica KT99]
gi|161331814|gb|EDQ02618.1| diaminopimelate epimerase [Shewanella benthica KT99]
Length = 274
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 120/284 (42%), Positives = 160/284 (56%), Gaps = 20/284 (7%)
Query: 85 HGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNS 143
HGLGNDF++VD + +PEQ +L DRNFGIG D ++ P + D+ RIFN+
Sbjct: 2 HGLGNDFMVVDGV-TQNVFFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNA 60
Query: 144 DGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILK 203
DG E E CGNG RCFARF+ + L KQ V T G + ++ DG V V+MG P+L+
Sbjct: 61 DGGEVEQCGNGARCFARFVRN-KGLTNKQKIKVSTSNGKLTLRLEQDGNVTVNMGIPVLE 119
Query: 204 ASDVPTSLSANKDQSVVKSELDVDGVKWNV---TCVSMGNPHCVTFGTKEGQNLKVDKLN 260
S +P +A + + + D K VSMGNPHCV L V+ +
Sbjct: 120 PSKIP--FNAKRPEKTYLLQTDTAESKMQTFLCGAVSMGNPHCV---------LDVEDIQ 168
Query: 261 LAE---IGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
A+ IG H FP N F+++I+ +K+RV+ERGA TLACGTGACA VV
Sbjct: 169 AADVEGIGALLTQHERFPKGVNVGFMQVINSGHIKLRVYERGAAETLACGTGACAAVVVG 228
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
L+G ++R VDLPGG L I W E ++MTGPAE V+ G +
Sbjct: 229 QLQGKLDKRVRVDLPGGTLTINWDGEGKPLWMTGPAEHVYDGQI 272
>gi|226313704|ref|YP_002773598.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599]
gi|226096652|dbj|BAH45094.1| diaminopimelate epimerase [Brevibacillus brevis NBRC 100599]
Length = 286
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 127/290 (43%), Positives = 178/290 (61%), Gaps = 16/290 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K HGLGND++ V+ R+ PE A ++ DRNFGIG DG+I MP D+
Sbjct: 1 MKFTKLHGLGNDYVYVNCFEEDLSRVDLPELARRVSDRNFGIGGDGLILIMPSER-ADFR 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ--DDGKVK- 194
MR+FN+DGSE + CGNG+RC ++++ + L + +FTV T G + P + DG+V
Sbjct: 60 MRVFNNDGSEAKNCGNGLRCVSKYVYD-HGLTEQTTFTVETLGGTVTPVVSLGADGRVDQ 118
Query: 195 --VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
+DMGEP + + +P ++ ++ V + ++V G + +T VSMGNPH + F +
Sbjct: 119 VTIDMGEPRFERAAIP--MTGIPEEQVREEGIEVGGTAFTMTAVSMGNPHAILFVDE--- 173
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V + ++ GP E+H FP RTN EF++I++ ++ RVWERG+G TLACGTGACA
Sbjct: 174 ---VKEEDVRHYGPMIEYHEWFPERTNVEFIQILNHEEILFRVWERGSGVTLACGTGACA 230
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VAA L G R+ TV L GG L IEWKE DN VYMTGPA VF G +
Sbjct: 231 AAVAAHLSGKTGRKVTVHLAGGDLFIEWKEADNRVYMTGPATEVFSGEYV 280
>gi|332528838|ref|ZP_08404812.1| diaminopimelate epimerase [Hylemonella gracilis ATCC 19624]
gi|332041697|gb|EGI78049.1| diaminopimelate epimerase [Hylemonella gracilis ATCC 19624]
Length = 302
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 124/291 (42%), Positives = 161/291 (55%), Gaps = 17/291 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPG-VNGTDYT 137
+ F K G GNDF+++D + + Q L DR+FG+GAD ++ P G D+
Sbjct: 3 IRFTKMQGAGNDFVVLDE-TQGQLGLNTAQYRWLADRHFGVGADQILSVRPSPAPGIDFE 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
I N+DG+E E CGNG RCFARF+ + L+ K S V T G+I P I DG+V VDM
Sbjct: 62 YVIHNADGAEVEQCGNGARCFARFVHD-RGLSEKPSIRVQTLGGVIEPRITLDGRVTVDM 120
Query: 198 GEPILKASDVP------TSLSANKDQSVVKS-ELDVDGVKWNVTCVSMGNPHCVTFGTKE 250
G PI VP T L ++ + VDGV N+ +SMGNPH V
Sbjct: 121 GAPIFDLVRVPFDAEGLTPLDQGNAHGAWQTWPVSVDGVPVNLAVLSMGNPHAVQIVAD- 179
Query: 251 GQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
VD + E GP+ E H+ FP R N F+++++ ++K+RVWERGAG TLACGTGA
Sbjct: 180 -----VDAAPVREQGPRIEQHARFPRRVNAGFMQVVARDRVKLRVWERGAGETLACGTGA 234
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
CA VVA + G E R V GG L IEW E V MTGPA VF+G +
Sbjct: 235 CAAVVAGIRLGLLEARVDVHTRGGVLTIEWS-EGRPVLMTGPATTVFHGEI 284
>gi|312797551|ref|YP_004030473.1| diaminopimelate epimerase [Burkholderia rhizoxinica HKI 454]
gi|312169326|emb|CBW76329.1| Diaminopimelate epimerase (EC 5.1.1.7) [Burkholderia rhizoxinica
HKI 454]
Length = 333
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 179/331 (54%), Gaps = 26/331 (7%)
Query: 45 KVPSFRVSASSMSSIHAPESASRTSFLDRR-ESGF--LHFVKYHGLGNDFILVDN-RNST 100
K+ + R + + +S ++ +F D R + G L F K HG GNDF+++D RN
Sbjct: 7 KLRTSRSNTTGCTSASKRAHRAKQAFTDARLQYGAMKLKFTKMHGAGNDFVVLDGVRNMI 66
Query: 101 EPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFA 159
P TP L DRNFG+GAD ++ P ++G D+ RIFN DG E E CGNG RCF
Sbjct: 67 SP--TPALVRYLADRNFGVGADQLLLVERPTLDGVDFKYRIFNCDGKEVEHCGNGARCFV 124
Query: 160 RFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVP---TSLSANKD 216
+F+ + L+ ++ V G+I +QD+G+V VDMG P+L A VP + L+ +D
Sbjct: 125 KFVRD-TGLSQARTIRVQVQHGVITLSVQDNGEVLVDMGAPVLAAPHVPFDTSGLTPARD 183
Query: 217 QSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEI---GPKFEHHSV 273
LDV G ++ VSMGNPH V VD + A + GP E H+
Sbjct: 184 GDDQLWPLDVHGSTQWISVVSMGNPHAVQI---------VDDADAAPVNRDGPVIESHAR 234
Query: 274 FPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPG 333
FP R N F++I+S ++K+RV+ERGAG TLACG+GACA VV + G + V G
Sbjct: 235 FPNRVNAGFMQIVSRREIKLRVYERGAGETLACGSGACAAVVTGIRRGVLDSPVRVRTRG 294
Query: 334 GPLDIEW---KEEDNHVYMTGPAEVVFYGSV 361
G L I W + D V M GPA VF G +
Sbjct: 295 GTLTISWDGQRNSDASVMMAGPATTVFEGKI 325
>gi|395651932|ref|ZP_10439782.1| diaminopimelate epimerase [Pseudomonas extremaustralis 14-3 substr.
14-3b]
Length = 276
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 132/290 (45%), Positives = 174/290 (60%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPSNPEVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I++DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKSGVIELDIRNDGQISVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P + + LDVDG ++ VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFQAA----EQATHYALDVDGQSVDIAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ +N A E+GPK EHH FPAR N F+++I S+ ++RVWERGAG T ACGTGACA
Sbjct: 167 NDINSAPVHELGPKIEHHPRFPARVNVGFLQVIDRSRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVLMTGPATRVYEGQVRL 276
>gi|119475310|ref|ZP_01615663.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2143]
gi|119451513|gb|EAW32746.1| diaminopimelate epimerase [marine gamma proteobacterium HTCC2143]
Length = 276
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 113/287 (39%), Positives = 173/287 (60%), Gaps = 13/287 (4%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K GLGNDF+++D + + E KL DR+FGIG D ++ P D+
Sbjct: 2 LLRFTKMQGLGNDFVVLD-LVTQRFNLQAEHVRKLADRHFGIGCDQLLVVETPMQPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RI+N DG+E E CGNG RCFA+F+ + + L GK V T +G+I + +D +++V+
Sbjct: 61 RYRIYNGDGNEVEQCGNGARCFAKFVRD-KKLTGKNKIRVETNSGIIELSVMEDRQIRVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG+P+L+ +D+P + S + L VD + +++ VS+GNPH + T E +
Sbjct: 120 MGKPLLEPADIPFTASKRANTYT----LLVDDEEVSISAVSVGNPHAII--TVE----DI 169
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
D ++ +GP E H+ FP R N F++++S ++ +RV+ERGAG TLACG+GACA +V+
Sbjct: 170 DTAPVSILGPAIECHTDFPQRVNVGFMQVVSRKEINLRVFERGAGETLACGSGACAAMVS 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
L+G +++ T +L GG L +EW E + V MTGPA VF G + L
Sbjct: 230 GQLQGLLDQQITANLSGGSLTLEWHGEGHPVMMTGPASNVFEGQITL 276
>gi|326389553|ref|ZP_08211120.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus JW 200]
gi|392940836|ref|ZP_10306480.1| diaminopimelate epimerase [Thermoanaerobacter siderophilus SR4]
gi|325994558|gb|EGD52983.1| diaminopimelate epimerase [Thermoanaerobacter ethanolicus JW 200]
gi|392292586|gb|EIW01030.1| diaminopimelate epimerase [Thermoanaerobacter siderophilus SR4]
Length = 274
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 123/290 (42%), Positives = 173/290 (59%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYT 137
+ F K HGLGNDFI+++ + + E A KLCDR+FGIGADG++ P G+ D
Sbjct: 1 MKFTKMHGLGNDFIVIEALENVD---YSELAIKLCDRHFGIGADGLLVVEPSGI--ADIR 55
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-QDDGKV--- 193
MRIFN+DGSE EMCGNG RCFA+++ E + K+ V T AG+I+PE+ ++GKV
Sbjct: 56 MRIFNADGSEAEMCGNGSRCFAKYVYE-RGIVKKEKMAVETLAGVIMPEVFVENGKVESV 114
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
KV MG PI +AS +P + Q + + +DG + +T + +G PH + F +N
Sbjct: 115 KVYMGNPIFEASKIPIK---SDKQKFINEPVKIDGKVYKLTSLRVGVPHTIVFVESLDEN 171
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ + E+GPK E S+FP TN +FV++ + +R WERG G TLACG+GACA
Sbjct: 172 M------IKELGPKIEKSSLFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACAS 225
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA+ + G ER V G L +EW EDN +Y++G E VF G + L
Sbjct: 226 AVASAVLGKTERNVNVHFKAGKLLVEWL-EDNSIYLSGSVEEVFRGEIEL 274
>gi|126176183|ref|YP_001052332.1| diaminopimelate epimerase [Shewanella baltica OS155]
gi|153002476|ref|YP_001368157.1| diaminopimelate epimerase [Shewanella baltica OS185]
gi|160877193|ref|YP_001556509.1| diaminopimelate epimerase [Shewanella baltica OS195]
gi|217975043|ref|YP_002359794.1| diaminopimelate epimerase [Shewanella baltica OS223]
gi|373951282|ref|ZP_09611243.1| Diaminopimelate epimerase [Shewanella baltica OS183]
gi|378710408|ref|YP_005275302.1| diaminopimelate epimerase [Shewanella baltica OS678]
gi|386322899|ref|YP_006019016.1| diaminopimelate epimerase [Shewanella baltica BA175]
gi|386342937|ref|YP_006039303.1| diaminopimelate epimerase [Shewanella baltica OS117]
gi|418022525|ref|ZP_12661512.1| Diaminopimelate epimerase [Shewanella baltica OS625]
gi|166225754|sp|A3D9Q0.1|DAPF_SHEB5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|166225755|sp|A6WTF5.1|DAPF_SHEB8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|189082840|sp|A9L5F5.1|DAPF_SHEB9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|254767120|sp|B8E690.1|DAPF_SHEB2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|125999388|gb|ABN63463.1| diaminopimelate epimerase [Shewanella baltica OS155]
gi|151367094|gb|ABS10094.1| Diaminopimelate epimerase [Shewanella baltica OS185]
gi|160862715|gb|ABX51249.1| Diaminopimelate epimerase [Shewanella baltica OS195]
gi|217500178|gb|ACK48371.1| Diaminopimelate epimerase [Shewanella baltica OS223]
gi|315269397|gb|ADT96250.1| diaminopimelate epimerase [Shewanella baltica OS678]
gi|333817044|gb|AEG09710.1| Diaminopimelate epimerase [Shewanella baltica BA175]
gi|334865338|gb|AEH15809.1| Diaminopimelate epimerase [Shewanella baltica OS117]
gi|353538750|gb|EHC08305.1| Diaminopimelate epimerase [Shewanella baltica OS625]
gi|373887882|gb|EHQ16774.1| Diaminopimelate epimerase [Shewanella baltica OS183]
Length = 275
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 165/290 (56%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PEQ +L DRNFGIG D ++ P + D+
Sbjct: 1 MIQFTKMHGLGNDFMVVDGV-TQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG+E E CGNG RCFARF+ + L K V T +G + ++ DG V V+
Sbjct: 60 HYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVSTSSGKMTLRLERDGTVTVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG PIL+ S +P + ++++ + + SMGNPHCV L V
Sbjct: 119 MGVPILEPSQIPFKAKKPEKTYLLQTPMQT----FLCGAASMGNPHCV---------LDV 165
Query: 257 DKL---NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ + ++AEIG H FP N F++++ +K+RV+ERGA TLACGTGACA
Sbjct: 166 EDVASASVAEIGAMLTKHERFPRGVNVGFMQVVDSGHIKLRVYERGAAETLACGTGACAA 225
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VV ++G ++ VDLPGG L I W+ E ++MTGPA+ V+ G + L
Sbjct: 226 VVVGQVQGKLGQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275
>gi|330818644|ref|YP_004362349.1| diaminopimelate epimerase [Burkholderia gladioli BSR3]
gi|327371037|gb|AEA62393.1| Diaminopimelate epimerase [Burkholderia gladioli BSR3]
Length = 288
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 167/292 (57%), Gaps = 15/292 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K G GNDF+++D + + +TPE+ L DR+FGIGAD ++ P ++G D+
Sbjct: 3 LPFTKMQGAGNDFVVLDG-TAGDLGLTPERVRALADRHFGIGADQLLLVERPSLDGVDFK 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + + L K + V G+I +QD+G+V VDM
Sbjct: 62 YRIFNCDGGEVEHCGNGARCFVKFVRD-KGLTDKTTVRVQVKHGVITLSMQDNGEVVVDM 120
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + + VP L+ +D + L+V+G ++ VSMGNPH V
Sbjct: 121 GSPVFEPARVPFDVAGLAGRRDGADTVYPLEVNGATRWISVVSMGNPHAVQLVDD----- 175
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ + E GP E H+ FP R N F++I+S ++K+RV+ERGAG TLACGTGACA V
Sbjct: 176 -AEAFAVLEDGPVIERHARFPQRVNAGFLQIVSRREVKLRVYERGAGETLACGTGACAAV 234
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLL 363
A + G + V GG L I W +++ +YM GPA VF G++ L
Sbjct: 235 AAGIRRGLLDSPVAVQTHGGTLTIHWDGARDQAAPLYMAGPAVTVFDGAIEL 286
>gi|291327138|ref|ZP_06127132.2| diaminopimelate epimerase [Providencia rettgeri DSM 1131]
gi|291311701|gb|EFE52154.1| diaminopimelate epimerase [Providencia rettgeri DSM 1131]
Length = 278
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 167/291 (57%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P D+
Sbjct: 5 MQFSKMHGLGNDFMVVDGV-TQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDFH 63
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T +G + I ++ V V+M
Sbjct: 64 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKQKIKVSTQSGRMTLTINENDGVCVNM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + VP + +++++ + V C VSMGNPHCV ++
Sbjct: 123 GEPDFEPQRVPFRAVKEEKTYIIRAQ------ERTVLCGVVSMGNPHCV---------IQ 167
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ ++ AE+ GP E+H FP R N F+EIIS +++RV+ERGAG T ACG+GACA
Sbjct: 168 VESIHTAEVEVLGPALENHERFPERANIGFMEIISADHIRLRVYERGAGETQACGSGACA 227
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G +R VDLPGG LDI W+ + +YMTGPA V+ G + L
Sbjct: 228 AVAVGITQGLLAKRVKVDLPGGSLDISWEGPGSPLYMTGPATHVYDGVIQL 278
>gi|126440065|ref|YP_001057250.1| diaminopimelate epimerase [Burkholderia pseudomallei 668]
gi|166224251|sp|A3N4H9.1|DAPF_BURP6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|126219558|gb|ABN83064.1| diaminopimelate epimerase [Burkholderia pseudomallei 668]
Length = 289
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 163/293 (55%), Gaps = 16/293 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D P +T Q L DR+FGIGAD ++ P V+G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L GK S V G+I +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTGKASVRVEVKHGVITLTMQDNGEVVVDM 121
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTF-GTKEGQN 253
G P+ + + VP + L ++ + L V+GV ++ VSMGNPH V E
Sbjct: 122 GAPVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVDDAEAFA 181
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
++VD GP E FP R N F++++S ++ +RV+ERGAG TLACGTGACA
Sbjct: 182 VRVD-------GPAIERDPRFPQRVNAGFMQVVSRHEVNLRVYERGAGETLACGTGACAA 234
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLL 363
V A + G + TV GG L I W ++E + M GPA VF G + L
Sbjct: 235 VAAGIRRGRLDSPVTVHTHGGTLTISWNGARDERAPLMMAGPATTVFEGVIEL 287
>gi|288941803|ref|YP_003444043.1| diaminopimelate epimerase [Allochromatium vinosum DSM 180]
gi|288897175|gb|ADC63011.1| diaminopimelate epimerase [Allochromatium vinosum DSM 180]
Length = 278
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 161/285 (56%), Gaps = 13/285 (4%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDY 136
L F K GLGNDF++ D R + + A L DR FGIG D ++ P + TD+
Sbjct: 3 LRFTKMQGLGNDFVVFDGVRQRVD--LDAGFARLLADRRFGIGCDQILLVEPPRLPETDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K V T AG I ++ DG+V+VD
Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFVRD-QGLTDKDEIPVGTAAGAIRLYLEPDGQVRVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P + +P S+ + L+++ + +SMGNPH V V
Sbjct: 120 MGAPAFTPARIPFSVETETADATYP--LEIEDRTLTIGALSMGNPHAVLIVDD------V 171
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
+ +A +GP EHH FP R N F++I+ P+ +++RV ERGAG TLACGTGACA VV+
Sbjct: 172 ESAPVATLGPLIEHHPDFPRRVNAGFMQILGPNAIRLRVHERGAGETLACGTGACAAVVS 231
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
G + R V LPGG L IEW+ + V+MTGPA VF G +
Sbjct: 232 GRRRGRLDERVRVALPGGELVIEWRGPGHPVWMTGPAVNVFEGEI 276
>gi|408373190|ref|ZP_11170888.1| diaminopimelate epimerase [Alcanivorax hongdengensis A-11-3]
gi|407767028|gb|EKF75467.1| diaminopimelate epimerase [Alcanivorax hongdengensis A-11-3]
Length = 284
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 119/288 (41%), Positives = 159/288 (55%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAA---KLCDRNFGIGADGVIFAMPGVN-G 133
L F K HGLGNDF+++D N P P AA +L +R+FG+G D ++ P
Sbjct: 3 LRFTKMHGLGNDFMVIDGINQPLPETGLPLPAAEIRRLGNRHFGVGFDQMLIVQPAQGPE 62
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKV 193
D+ RI N+DGSE CGNG RCFARF+ + L KQ V T AG + + D +V
Sbjct: 63 ADFRYRILNADGSEVSQCGNGARCFARFVRD-AGLTDKQEIVVETAAGQMTLTVTGDEQV 121
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG P +D+P + A D +V S W V V +GNPHC
Sbjct: 122 TVDMGAPRWAPADIPMTAKAEADSYIVVSGHQA----WEVGAVGLGNPHCTLLVEN---- 173
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
VD+ + +GP E H FP R N F++++S S++++RV+ERGAG TLACG+GACA
Sbjct: 174 --VDQAPVETVGPLLESHEQFPERVNVGFMQVVSRSEIRLRVYERGAGETLACGSGACAA 231
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VV G + + TV LPGGPL I + E + MTGPA V+ GS+
Sbjct: 232 VVIGQRRGLLDSQVTVHLPGGPLQISYDGEGG-IRMTGPASRVYDGSI 278
>gi|120600507|ref|YP_965081.1| diaminopimelate epimerase [Shewanella sp. W3-18-1]
gi|146294665|ref|YP_001185089.1| diaminopimelate epimerase [Shewanella putrefaciens CN-32]
gi|386315276|ref|YP_006011441.1| diaminopimelate epimerase [Shewanella putrefaciens 200]
gi|166225757|sp|A4YBF7.1|DAPF_SHEPC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|166225759|sp|A1RPD2.1|DAPF_SHESW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|120560600|gb|ABM26527.1| diaminopimelate epimerase [Shewanella sp. W3-18-1]
gi|145566355|gb|ABP77290.1| diaminopimelate epimerase [Shewanella putrefaciens CN-32]
gi|319427901|gb|ADV55975.1| diaminopimelate epimerase [Shewanella putrefaciens 200]
Length = 275
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 166/292 (56%), Gaps = 23/292 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PEQ +L DRNFGIG D ++ P + D+
Sbjct: 1 MIQFTKMHGLGNDFMVVDGV-TQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + L K V T +G + ++ DG V V+
Sbjct: 60 HYRIFNADGSEVEQCGNGARCFARFVRN-KGLTNKNKIRVSTSSGKMTLRLERDGTVTVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MG PIL+ S +P + ++++ + C SMGNPHCV L
Sbjct: 119 MGVPILEPSLIPFKAKKPEKTYLLQT------AQQTFLCGAASMGNPHCV---------L 163
Query: 255 KVDKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
V+ + +AEIG H FP N F+++I+ +K+RV+ERGA TLACGTGAC
Sbjct: 164 DVEDVASAAVAEIGALLTKHERFPRGVNVGFMQVINSGHIKLRVYERGAAETLACGTGAC 223
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A VV ++G +++ VDLPGG L I W+ E ++MTGPA+ V+ G + L
Sbjct: 224 AAVVVGQIQGKLDQQVRVDLPGGTLTINWEGEGKPLWMTGPAQHVYDGQIQL 275
>gi|315633489|ref|ZP_07888779.1| diaminopimelate epimerase [Aggregatibacter segnis ATCC 33393]
gi|315477531|gb|EFU68273.1| diaminopimelate epimerase [Aggregatibacter segnis ATCC 33393]
Length = 274
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 172/290 (59%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVD--NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTD 135
+ F K HGLGNDF++VD +N P T + +L DR+ GIG D ++ P + D
Sbjct: 1 MQFSKMHGLGNDFMVVDAVTQNVYFPADTIK---RLADRHRGIGFDQLLVVEPPYDPELD 57
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V +++D V+V
Sbjct: 58 FHYRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKKDIAVSTQNGKMVLTVKEDDNVRV 116
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQN 253
+MGEPI + + +P + + + ++++E+ V C VSMGNPHCV Q
Sbjct: 117 NMGEPIWEPNKIPFTANKFEKNYILRTEIQT------VLCGAVSMGNPHCVV------QV 164
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ N+A++GP E+H FP R N F+++++ +K+RV ERGAG T ACG+GACA
Sbjct: 165 DDIHTANVAQLGPLLENHERFPERVNAGFMQVVNRKHIKLRVHERGAGETQACGSGACAA 224
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ E + +YMTG A V+ G + L
Sbjct: 225 VAVGIMQGVLDNEVQVDLPGGSLLIEWQGEGHPLYMTGSATHVYDGVIYL 274
>gi|313894356|ref|ZP_07827921.1| diaminopimelate epimerase [Veillonella sp. oral taxon 158 str.
F0412]
gi|313441180|gb|EFR59607.1| diaminopimelate epimerase [Veillonella sp. oral taxon 158 str.
F0412]
Length = 277
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 165/286 (57%), Gaps = 23/286 (8%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ K HGLGNDFIL + TE T + A +LCDR GIGADG+ +P D M
Sbjct: 1 MKLTKMHGLGNDFILFADPKGTEKDYT-DLAIRLCDRRTGIGADGLAILVPS-ETCDVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KVK 194
RI NSDGSE EMCGN +RCFA++ E K++FT+ T AG++ P + + +V
Sbjct: 59 RIINSDGSEAEMCGNAIRCFAKYAYE-HGETTKETFTIETLAGVMKPTLTIENGIVTQVT 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG+P K+ D+P ++ +K V+ +LDV+G V+ V +G PH F
Sbjct: 118 VDMGKPFFKSQDIPMNVDMDK---VIDVDLDVNGETVTVSSVLLGVPHTEVF-------- 166
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+D + A + GP E H FP+ TN ++E+I+ +K+R WERGAGATLACGTG+C
Sbjct: 167 -IDDITKAPVTTQGPILEKHDAFPSNTNVNYIEVINDKHIKVRTWERGAGATLACGTGSC 225
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVF 357
A V + +G R V+L G L I + ED V MTGPAE VF
Sbjct: 226 ASAVMSFEKGLTGREVDVELYLGTLHISYL-EDGTVLMTGPAEEVF 270
>gi|260912680|ref|ZP_05919166.1| diaminopimelate epimerase [Pasteurella dagmatis ATCC 43325]
gi|260633058|gb|EEX51223.1| diaminopimelate epimerase [Pasteurella dagmatis ATCC 43325]
Length = 279
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 118/286 (41%), Positives = 167/286 (58%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 6 MQFSKMHGLGNDFVVVDAI-TQNLYFSPETIKRLADRHRGIGFDQMLVVEPPYDPDQDFH 64
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ TV T G ++ + ++ KV+V+M
Sbjct: 65 YRIFNADGSEVAQCGNGARCFARFVT-LKGLTDKKEITVSTQIGKMILNVLENEKVQVNM 123
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEPI + + +P ANK + D+ V V VSMGNPHCV Q +
Sbjct: 124 GEPIWEPAKIP--FVANKFEKNYILRTDIQTVLCGV--VSMGNPHCVV------QVDDIK 173
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
N+ ++GP E H FP R N F+++I+ +K+RV+ERGAG T ACG+GACA V
Sbjct: 174 TANVEQLGPLLESHERFPERVNAGFMQVINRRHIKLRVYERGAGETQACGSGACAAVAVG 233
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G + + VDLPGG L IEW+ ++MTG A V+ G + L
Sbjct: 234 IMQGLLDSKVQVDLPGGSLTIEWEGVGKPLFMTGEATHVYDGVIRL 279
>gi|148826606|ref|YP_001291359.1| diaminopimelate epimerase [Haemophilus influenzae PittEE]
gi|166224259|sp|A5UDX5.1|DAPF_HAEIE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|148716766|gb|ABQ98976.1| diaminopimelate epimerase [Haemophilus influenzae PittEE]
Length = 274
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 168/288 (58%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
+ F K HGLGNDF++VD + TPE +L +R+ GIG D + I P D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VS+GNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSIGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E+H FP R N F++II+ +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IQTANVEQLGPLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G VDLPGG L IEW + +YMTG A ++ G + L
Sbjct: 227 VGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274
>gi|303231264|ref|ZP_07318002.1| diaminopimelate epimerase [Veillonella atypica ACS-049-V-Sch6]
gi|302514171|gb|EFL56175.1| diaminopimelate epimerase [Veillonella atypica ACS-049-V-Sch6]
Length = 277
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 120/286 (41%), Positives = 166/286 (58%), Gaps = 23/286 (8%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ K HGLGNDFIL + T + A +LCDR GIGADG++ +P N D M
Sbjct: 1 MKLTKMHGLGNDFILFSDSQGANKDYT-DLAIRLCDRRTGIGADGLVIVVPS-NTCDVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KVK 194
RI NSDGSE EMCGNG+RCFA++ E + K +FT+ T AG++ P + + +V
Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYAYEHGEIT-KDTFTIETLAGVMKPTLTIENGIVTQVT 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG+P + D+P +++ +K V+ +LDV+G V+ V +G PH F
Sbjct: 118 VDMGKPFFNSKDIPMNVTMDK---VIDVDLDVNGETVTVSSVLLGVPHTEVF-------- 166
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
VD + A + GP E H FP+ TN ++E+++ +K+R WERGAGATLACGTG+C
Sbjct: 167 -VDDITKAPVTTQGPILEKHDAFPSNTNVNYIEVVNDHHIKVRTWERGAGATLACGTGSC 225
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVF 357
A + + +G R V+L G L I + ED V MTGPAE VF
Sbjct: 226 ASAIMSHEKGLTGREVDVELYLGTLHISYL-EDGTVLMTGPAEEVF 270
>gi|390934812|ref|YP_006392317.1| diaminopimelate epimerase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570313|gb|AFK86718.1| Diaminopimelate epimerase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 277
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 167/288 (57%), Gaps = 19/288 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYT 137
+ F K GLGNDFI+++N + E A KLCDR+FGIG DG++ P G+ D
Sbjct: 1 MKFTKMTGLGNDFIVLENLENKELEYDV-LARKLCDRHFGIGGDGLLIVEPSGI--ADIK 57
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDD--GKV 193
MRI NSDGSE EMCGNG RCFA+++ E + K +V T +G+++PE+ +DD KV
Sbjct: 58 MRIINSDGSEAEMCGNGARCFAKYVYE-NGIVSKGKMSVETLSGIVMPELIFEDDVVDKV 116
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+V MG PI + +P N+ V+ + +DG + VT + +G PH V F +N
Sbjct: 117 RVHMGNPIFRPDLIPVKTDKNQ---FVEETIKIDGKTYIVTSLLVGVPHTVIFVNSIDEN 173
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ V+ +GP E +FP TN +FV++ + + +R WERGAG TLACGTGACA
Sbjct: 174 IIVN------VGPLIEKLQIFPRGTNVDFVKVEDENNITVRTWERGAGLTLACGTGACAS 227
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA+ L R V G L IEW DN++Y+TG AE VF G +
Sbjct: 228 AVASALTNRTMRNVYVHFKKGDLYIEWT-SDNNIYLTGKAEKVFTGDI 274
>gi|409395654|ref|ZP_11246715.1| diaminopimelate epimerase [Pseudomonas sp. Chol1]
gi|409119591|gb|EKM95967.1| diaminopimelate epimerase [Pseudomonas sp. Chol1]
Length = 276
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P N D+
Sbjct: 2 LLRFTKMHGLGNDFMVID-LISQHAHIQPKHAKQWGDRHTGIGFDQLLIVEPPQNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T G+I +I+ DG+++VD
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVVD-KRLTVKRKIKVETKGGIIELDIRPDGQIRVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P LK +D+P D + LDV G + + VSMGNPH V L+V
Sbjct: 120 MGPPRLKPADIPF----QADAEALSYPLDVAGRRVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D ++ A E+GP+ EHH FP R N F++++ ++RVWERGAG T ACGTGACA
Sbjct: 167 DSVDTAPVHELGPQIEHHPRFPQRVNVGFLQVVDRGHARLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA VF G V L
Sbjct: 227 AVAAIRQGWMDSPVQIDLPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276
>gi|419952468|ref|ZP_14468615.1| diaminopimelate epimerase [Pseudomonas stutzeri TS44]
gi|387970513|gb|EIK54791.1| diaminopimelate epimerase [Pseudomonas stutzeri TS44]
Length = 276
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 169/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P N D+
Sbjct: 2 LLRFTKMHGLGNDFMVID-LVSQHAHIQPKHARQWGDRHTGIGFDQLLIVEPPQNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I +I+ DG+++VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVVD-KRLTAKRRIKVETRGGIIELDIRADGQIRVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P D + LDV G + + VSMGNPH V L+V
Sbjct: 120 MGPPRLTPTDIPF----QADAEALSYPLDVAGQRVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D ++ A E+GP+ EHH FP R N F++++ ++RVWERGAG T ACGTGACA
Sbjct: 167 DSVDTAPVHELGPQIEHHPRFPQRVNVGFLQVVDRDHARLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA VF G V L
Sbjct: 227 AVAAIRQGWMDSPVQIDLPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276
>gi|256821401|ref|YP_003145364.1| diaminopimelate epimerase [Kangiella koreensis DSM 16069]
gi|256794940|gb|ACV25596.1| diaminopimelate epimerase [Kangiella koreensis DSM 16069]
Length = 276
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/285 (41%), Positives = 163/285 (57%), Gaps = 19/285 (6%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYTMR 139
F K GLGNDF++VD S + Q AKL RNFGIG D + I P +D+ R
Sbjct: 5 FSKMQGLGNDFVVVDAI-SQPVYLNQGQIAKLAHRNFGIGFDQLLIVEAPQHPESDFHFR 63
Query: 140 IFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
IFN+DGSE CGNG R A+++ + + L K+ + T + ++D+G V +DMG+
Sbjct: 64 IFNADGSEAGHCGNGARAVAKYVRQ-KGLTWKRQLRLSTNTATMQATLEDNGLVTIDMGK 122
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P L+ + +P + + +D G+ + V VSMGNPHCV LKVD +
Sbjct: 123 PRLEPAQIPLRFAEKQ----TLYSIDAGGISYKVGAVSMGNPHCV---------LKVDNV 169
Query: 260 NLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
A +GP H FP++ N F++I+ +K+RV+ERG G TLACGTGACA VV
Sbjct: 170 EKAPVQTVGPMLSQHKYFPSQANAGFMQIVDRQNIKLRVYERGVGETLACGTGACAAVVV 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
A L+G + + V LPGG L I W+ E + V+M+GPA+VVF G V
Sbjct: 230 ARLQGLTDDKVKVMLPGGSLWITWQGEGSRVFMSGPAKVVFEGQV 274
>gi|377579451|ref|ZP_09808419.1| diaminopimelate epimerase [Escherichia hermannii NBRC 105704]
gi|377539244|dbj|GAB53584.1| diaminopimelate epimerase [Escherichia hermannii NBRC 105704]
Length = 274
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 167/288 (57%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVNEDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSQVPFRANKAEKTYIMRA------AEQTIMCGVVSMGNPHCVL------QVES 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
V+ + +GP E+H FP R N F+++++PS +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VETAAVETLGPVLENHERFPERANIGFMQVVTPSHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G + V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGISQGLLAEQVRVELPGGLLDIAWKGPGHPLYMTGPAAHVYDGFIHL 274
>gi|404399429|ref|ZP_10991013.1| diaminopimelate epimerase [Pseudomonas fuscovaginae UPB0736]
Length = 276
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 133/290 (45%), Positives = 171/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPSNPEVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +++ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRRIRVETKSGIIELDVRQDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P A + LDVDG + VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFQAPAQ----ALSYPLDVDGHTVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ +N A E+GPK EHH FPAR N F+++I + ++RVWERGAG T ACGTGACA
Sbjct: 167 NDINAAPVHELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + T+DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPVTIDLPGGRLSIEWAGVGQPVVMTGPAVRVYEGQVRL 276
>gi|398812437|ref|ZP_10571193.1| diaminopimelate epimerase [Variovorax sp. CF313]
gi|398077928|gb|EJL68872.1| diaminopimelate epimerase [Variovorax sp. CF313]
Length = 291
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/292 (42%), Positives = 161/292 (55%), Gaps = 18/292 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPG-VNGTDYT 137
+ F K G GNDF+++D T ++ Q L DR+FG+GAD ++ P G D+
Sbjct: 3 IRFTKMQGAGNDFVVLDETRGTLG-LSAAQYRFLADRHFGVGADQILTVRPSPAEGIDFQ 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
I N+DG E E CGNG RCF RF++E L K V T AG+I P + DG+V VDM
Sbjct: 62 YVIHNADGGEVEQCGNGARCFMRFVSE-HKLTKKTEVRVQTLAGVIEPRMGADGRVTVDM 120
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKW-----NVTCVSMGNPHCVTFGTK 249
G P+ + +P L D + K L + G + +V +SMGNPH V
Sbjct: 121 GAPVFEPERIPFDTAGLDPQHDGAWQKWHLAL-GTRAGSAIVSVAVLSMGNPHAVQVVDN 179
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
VD +AE GP+ EHH FP R N F++++ S +K+RV+ERGAG TLACGTG
Sbjct: 180 ------VDTAPVAEQGPQIEHHPRFPQRVNAGFMQVVDRSNIKLRVFERGAGETLACGTG 233
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
ACA VVA + G +RR V GG L IEW+ E V MTGPA VF G +
Sbjct: 234 ACAAVVAGIRLGLLDRRVDVQTHGGILTIEWQGEGQPVLMTGPATTVFEGDI 285
>gi|322513262|ref|ZP_08066386.1| diaminopimelate epimerase [Actinobacillus ureae ATCC 25976]
gi|322120969|gb|EFX92816.1| diaminopimelate epimerase [Actinobacillus ureae ATCC 25976]
Length = 279
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 173/288 (60%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++D + +T + KL DR+ G+G D ++ P + D+
Sbjct: 6 MQFSKMHGLGNDFMVIDGV-TQNVYLTEDVIRKLADRHTGVGFDQLLLVEPPYDPDLDFH 64
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T G ++ ++ + KV+V+M
Sbjct: 65 YRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKQDIHVSTAKGKMILTLKGEEKVRVNM 123
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + VP + + + +++++L V C VSMGNPHCV + +++K
Sbjct: 124 GEPIWEPAQVPFTANKFEKNYILRTDLQT------VLCGVVSMGNPHCVL----QVEDIK 173
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+N E+GP E+H FP R N F+++++ + +K+RV+ERGAG T ACG+GAC V
Sbjct: 174 TAPVN--ELGPLLENHERFPERANIGFIQVVNRNHIKLRVFERGAGETQACGSGACGAVA 231
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G + VDLPGG L IEWK + +YMTG A ++ G + L
Sbjct: 232 VGIMQGLLDSNVQVDLPGGSLQIEWKGVGHPLYMTGDATHIYDGFIKL 279
>gi|113461746|ref|YP_719815.1| diaminopimelate epimerase [Haemophilus somnus 129PT]
gi|122945419|sp|Q0I572.1|DAPF_HAES1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|112823789|gb|ABI25878.1| diaminopimelate epimerase [Haemophilus somnus 129PT]
Length = 274
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 170/290 (58%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVD--NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTD 135
+ F K HGLGNDF++VD +N P E +L DRN GIG D ++ P + D
Sbjct: 1 MQFSKMHGLGNDFVVVDAVTQNVYFP---TEVIKRLADRNRGIGFDQLLVVEPPYDPDLD 57
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G ++ ++DD V V
Sbjct: 58 FHYRIFNADGSEVSQCGNGARCFARFVV-LKGLTDKKEIAVSTAKGKMMLRVKDDDMVCV 116
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQN 253
+MGEPI + + +P + + + ++++++ + C VSMGNPHCVT Q
Sbjct: 117 NMGEPIWEPNKIPFNANKFEKNYIIRTDIQT------LLCGVVSMGNPHCVT------QV 164
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ N+ +GP E H FP R N F++II+ + +K+RV+ERGAG T ACG+GACA
Sbjct: 165 EDIQHANIEILGPLLESHERFPERVNAGFMQIINRNHIKLRVYERGAGETQACGSGACAA 224
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ + + +YMTG A ++ G + L
Sbjct: 225 VAVGIMQGVLDNNVQVDLPGGRLMIEWQGKGHPLYMTGEATHIYDGVIRL 274
>gi|53724459|ref|YP_104734.1| diaminopimelate epimerase [Burkholderia mallei ATCC 23344]
gi|67639322|ref|ZP_00438192.1| diaminopimelate epimerase [Burkholderia mallei GB8 horse 4]
gi|121598944|ref|YP_994216.1| diaminopimelate epimerase [Burkholderia mallei SAVP1]
gi|124385583|ref|YP_001028131.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10229]
gi|126450841|ref|YP_001082942.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10247]
gi|126453808|ref|YP_001064492.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106a]
gi|134283596|ref|ZP_01770295.1| diaminopimelate epimerase [Burkholderia pseudomallei 305]
gi|167003307|ref|ZP_02269095.1| diaminopimelate epimerase [Burkholderia mallei PRL-20]
gi|167717573|ref|ZP_02400809.1| diaminopimelate epimerase [Burkholderia pseudomallei DM98]
gi|167736616|ref|ZP_02409390.1| diaminopimelate epimerase [Burkholderia pseudomallei 14]
gi|167822230|ref|ZP_02453701.1| diaminopimelate epimerase [Burkholderia pseudomallei 9]
gi|167843824|ref|ZP_02469332.1| diaminopimelate epimerase [Burkholderia pseudomallei B7210]
gi|167892323|ref|ZP_02479725.1| diaminopimelate epimerase [Burkholderia pseudomallei 7894]
gi|167900819|ref|ZP_02488024.1| diaminopimelate epimerase [Burkholderia pseudomallei NCTC 13177]
gi|167909039|ref|ZP_02496130.1| diaminopimelate epimerase [Burkholderia pseudomallei 112]
gi|167917079|ref|ZP_02504170.1| diaminopimelate epimerase [Burkholderia pseudomallei BCC215]
gi|226199848|ref|ZP_03795399.1| diaminopimelate epimerase [Burkholderia pseudomallei Pakistan 9]
gi|237810387|ref|YP_002894838.1| diaminopimelate epimerase [Burkholderia pseudomallei MSHR346]
gi|242314725|ref|ZP_04813741.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106b]
gi|254175103|ref|ZP_04881764.1| diaminopimelate epimerase [Burkholderia mallei ATCC 10399]
gi|254196886|ref|ZP_04903310.1| diaminopimelate epimerase [Burkholderia pseudomallei S13]
gi|254201833|ref|ZP_04908197.1| diaminopimelate epimerase [Burkholderia mallei FMH]
gi|254207163|ref|ZP_04913514.1| diaminopimelate epimerase [Burkholderia mallei JHU]
gi|254258338|ref|ZP_04949392.1| diaminopimelate epimerase [Burkholderia pseudomallei 1710a]
gi|254359669|ref|ZP_04975940.1| diaminopimelate epimerase [Burkholderia mallei 2002721280]
gi|386863335|ref|YP_006276284.1| diaminopimelate epimerase [Burkholderia pseudomallei 1026b]
gi|403516860|ref|YP_006650993.1| diaminopimelate epimerase [Burkholderia pseudomallei BPC006]
gi|418539236|ref|ZP_13104832.1| Diaminopimelate epimerase [Burkholderia pseudomallei 1026a]
gi|418545371|ref|ZP_13110628.1| Diaminopimelate epimerase [Burkholderia pseudomallei 1258a]
gi|418548568|ref|ZP_13113679.1| Diaminopimelate epimerase [Burkholderia pseudomallei 1258b]
gi|81603782|sp|Q62EZ3.1|DAPF_BURMA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|166224247|sp|A3MRQ6.1|DAPF_BURM7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|166224248|sp|A2S862.1|DAPF_BURM9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|166224249|sp|A1V7L3.1|DAPF_BURMS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|166224250|sp|A3NQ71.1|DAPF_BURP0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|52427882|gb|AAU48475.1| diaminopimelate epimerase [Burkholderia mallei ATCC 23344]
gi|121227754|gb|ABM50272.1| diaminopimelate epimerase [Burkholderia mallei SAVP1]
gi|124293603|gb|ABN02872.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10229]
gi|126227450|gb|ABN90990.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106a]
gi|126243711|gb|ABO06804.1| diaminopimelate epimerase [Burkholderia mallei NCTC 10247]
gi|134245005|gb|EBA45100.1| diaminopimelate epimerase [Burkholderia pseudomallei 305]
gi|147747727|gb|EDK54803.1| diaminopimelate epimerase [Burkholderia mallei FMH]
gi|147752705|gb|EDK59771.1| diaminopimelate epimerase [Burkholderia mallei JHU]
gi|148028883|gb|EDK86815.1| diaminopimelate epimerase [Burkholderia mallei 2002721280]
gi|160696148|gb|EDP86118.1| diaminopimelate epimerase [Burkholderia mallei ATCC 10399]
gi|169653629|gb|EDS86322.1| diaminopimelate epimerase [Burkholderia pseudomallei S13]
gi|225928199|gb|EEH24235.1| diaminopimelate epimerase [Burkholderia pseudomallei Pakistan 9]
gi|237502670|gb|ACQ94988.1| diaminopimelate epimerase [Burkholderia pseudomallei MSHR346]
gi|238519858|gb|EEP83324.1| diaminopimelate epimerase [Burkholderia mallei GB8 horse 4]
gi|242137964|gb|EES24366.1| diaminopimelate epimerase [Burkholderia pseudomallei 1106b]
gi|243061117|gb|EES43303.1| diaminopimelate epimerase [Burkholderia mallei PRL-20]
gi|254217027|gb|EET06411.1| diaminopimelate epimerase [Burkholderia pseudomallei 1710a]
gi|385345860|gb|EIF52553.1| Diaminopimelate epimerase [Burkholderia pseudomallei 1026a]
gi|385346307|gb|EIF52993.1| Diaminopimelate epimerase [Burkholderia pseudomallei 1258a]
gi|385357879|gb|EIF63915.1| Diaminopimelate epimerase [Burkholderia pseudomallei 1258b]
gi|385660463|gb|AFI67886.1| Diaminopimelate epimerase [Burkholderia pseudomallei 1026b]
gi|403072504|gb|AFR14084.1| diaminopimelate epimerase [Burkholderia pseudomallei BPC006]
Length = 289
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 162/293 (55%), Gaps = 16/293 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D P +T Q L DR+FGIGAD ++ P V+G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L GK S V G+I +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTGKASVRVEVKHGVITLTMQDNGEVVVDM 121
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTF-GTKEGQN 253
G P+ + + VP + L ++ + L V+GV ++ VSMGNPH V E
Sbjct: 122 GAPVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVDDAEAFA 181
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
++VD GP E FP R N F++I+S ++ +RV+ERGAG TLACGTGACA
Sbjct: 182 VRVD-------GPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAA 234
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWK---EEDNHVYMTGPAEVVFYGSVLL 363
V A + G + TV GG L I W +E + M GPA VF G + L
Sbjct: 235 VAAGIRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIEL 287
>gi|238028905|ref|YP_002913136.1| diaminopimelate epimerase [Burkholderia glumae BGR1]
gi|237878099|gb|ACR30432.1| Diaminopimelate epimerase [Burkholderia glumae BGR1]
Length = 288
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/288 (41%), Positives = 165/288 (57%), Gaps = 15/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D + + +TPE+ L DR+FG+GAD V+ P ++G D+
Sbjct: 3 LPFTKMHGAGNDFVVLDG-TAGDLGLTPERVRALADRHFGVGADQVLLVERPTLDGADFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF RF+ + + L K + V GL+ +Q++G+V VDM
Sbjct: 62 YRIFNCDGGEVEHCGNGARCFVRFVHD-KGLTDKTTVRVQVSHGLLTLTLQENGEVVVDM 120
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + + VP L A ++ + L+V G ++ VSMGNPH V
Sbjct: 121 GSPVFEPARVPFDAAGLDARREGADTLFPLEVGGTTRWISVVSMGNPHAVQVVDD----- 175
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V+ +AE GP EHH+ FP R N F++I+S ++K+RV+ERGAG TLACGTGACA V
Sbjct: 176 -VETFPVAEEGPLVEHHARFPQRVNAGFLQIVSRREVKLRVYERGAGETLACGTGACAAV 234
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYG 359
A + G + V GG L I W ++ + M GPA VF G
Sbjct: 235 AAGIRRGLLDSPVAVQTHGGVLTIAWDGMRDAAAPLSMAGPAVTVFEG 282
>gi|423199355|ref|ZP_17185938.1| diaminopimelate epimerase [Aeromonas hydrophila SSU]
gi|404629350|gb|EKB26111.1| diaminopimelate epimerase [Aeromonas hydrophila SSU]
Length = 276
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 165/289 (57%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + + + + KL DR+FGIG D ++ P + D+
Sbjct: 2 LIDFSKMHGLGNDFMVVDGV-TQKVFFSNDVIKKLADRHFGIGFDQLLLVEPPYDPELDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ L+ L + V T G IV +++ + +V V+
Sbjct: 61 HYRIFNADGSEVEQCGNGARCFARFV-RLKGLINRDRIAVSTARGRIVLQLEGENQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MG P + +P + +++++ + V C VSMGNPHCV +
Sbjct: 120 MGVPQFEPGKIPFRAQKAEKTYLLRAQ------EHTVMCGAVSMGNPHCVI------EVP 167
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V + +GP E H FP R N F+E ++ S++K+RV+ERG G TLACGTGACA V
Sbjct: 168 SVADAPVETLGPIMERHERFPERVNVGFMETVNASEIKLRVFERGVGETLACGTGACAAV 227
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G + R TV LPGG L I WK VYMTGPAE VF G + L
Sbjct: 228 VIGISQGKLKERVTVTLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL 276
>gi|167037739|ref|YP_001665317.1| diaminopimelate epimerase [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|167040401|ref|YP_001663386.1| diaminopimelate epimerase [Thermoanaerobacter sp. X514]
gi|166854641|gb|ABY93050.1| Diaminopimelate epimerase [Thermoanaerobacter sp. X514]
gi|166856573|gb|ABY94981.1| Diaminopimelate epimerase [Thermoanaerobacter pseudethanolicus ATCC
33223]
Length = 269
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/284 (42%), Positives = 171/284 (60%), Gaps = 21/284 (7%)
Query: 85 HGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNS 143
HGLGNDFI+++ R + + E A KLCDR+FGIGADG++ P G+ D MRIFN+
Sbjct: 2 HGLGNDFIVIEARENVD---YSELAIKLCDRHFGIGADGLLVVEPSGI--ADIRMRIFNA 56
Query: 144 DGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-QDDGKV---KVDMGE 199
DGSE EMCGNG RCFA+++ E + K+ V T AG+I+PE+ ++GKV KV MG
Sbjct: 57 DGSEAEMCGNGSRCFAKYVYE-RGIVKKEKMAVETLAGVIMPEVFVENGKVESVKVYMGS 115
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
PI +A+ +P Q + + +DG + +T + +G PH + F +N+
Sbjct: 116 PIFEANKIPVKTDK---QKFINEPVKIDGKVYKLTSIRVGVPHTIVFVKSLDENM----- 167
Query: 260 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVL 319
+ E+GPK E S+FP TN +FV++ + +R WERG G TLACG+GACA VA+ +
Sbjct: 168 -IKELGPKIEKSSIFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACASAVASAV 226
Query: 320 EGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
G ER V GG L +EW +DN +Y++G E VF G + L
Sbjct: 227 LGKTERNVNVHFKGGKLLVEWL-DDNSIYLSGSVEEVFRGEIEL 269
>gi|401680441|ref|ZP_10812357.1| diaminopimelate epimerase [Veillonella sp. ACP1]
gi|400218522|gb|EJO49401.1| diaminopimelate epimerase [Veillonella sp. ACP1]
Length = 277
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/286 (41%), Positives = 166/286 (58%), Gaps = 23/286 (8%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ K HGLGNDFIL + T + A +LCDR GIGADG++ +P N D M
Sbjct: 1 MKLTKMHGLGNDFILFSDPQGANKDYT-DLAIRLCDRRTGIGADGLVIVVPS-NTCDVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KVK 194
RI NSDGSE EMCGNG+RCFA++ E + K +FT+ T AG++ P + + +V
Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYAYEHGEIT-KDTFTIETLAGVMKPTLTIENGIVTQVT 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG+P + D+P +++ +K V+ +LDV+G V+ V +G PH F
Sbjct: 118 VDMGKPFFNSKDIPMNVTMDK---VIDVDLDVNGETVTVSSVLLGVPHTEVF-------- 166
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
VD + A + GP E H FP+ TN ++E+++ +K+R WERGAGATLACGTG+C
Sbjct: 167 -VDDITKAPVTTQGPILEKHDAFPSNTNVNYIEVVNDHHIKVRTWERGAGATLACGTGSC 225
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVF 357
A + + +G R V+L G L I + ED V MTGPAE VF
Sbjct: 226 ASAIMSHEKGLTGREVDVELYLGTLHISYL-EDGTVLMTGPAEEVF 270
>gi|333894925|ref|YP_004468800.1| diaminopimelate epimerase [Alteromonas sp. SN2]
gi|332994943|gb|AEF04998.1| diaminopimelate epimerase [Alteromonas sp. SN2]
Length = 276
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 169/286 (59%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++DN + + ++ +L +RNFGIG D ++ P + D+
Sbjct: 3 VQFSKMHGLGNDFMVIDNV-TQNVFFSKDKIQQLANRNFGIGFDQLLMVEPPYDPEQDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE E CGNG RCFARF+ + + L + V T AG +V ++ DG+V V+M
Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVKQ-KGLINRNKIVVSTKAGKMVLYLEKDGQVTVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G+P + + +P L ANK ++ L V+ VSMGNPHCV + VD
Sbjct: 121 GKPEFEPAKIP--LKANKQENTYI--LRVNDKTLFYGAVSMGNPHCVM------EVEDVD 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ EIGP E + FP N F++II+ S +++RV+ERG+G TLACG+GACA V
Sbjct: 171 TAPVKEIGPLVERNERFPEGVNVGFMQIINESHIRLRVFERGSGETLACGSGACAAVAIG 230
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
++G + VDLPGG L I W DN + MTGPA+ V+ G + L
Sbjct: 231 QIQGKLSKDVRVDLPGGSLRIRWPGPDNVLKMTGPADHVYDGHINL 276
>gi|374370662|ref|ZP_09628662.1| diaminopimelate epimerase [Cupriavidus basilensis OR16]
gi|373097814|gb|EHP38935.1| diaminopimelate epimerase [Cupriavidus basilensis OR16]
Length = 288
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 163/291 (56%), Gaps = 14/291 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
L F K HG GNDF+++D + T +TP Q L R+FG+GAD + + P + D+
Sbjct: 3 LQFTKMHGAGNDFVVLDGIHQTL-NLTPVQWRALASRHFGVGADQILVVEKPTRDDVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DG E E CGNG RCF RF+ + L K+S V G+I +QDDG+V VDM
Sbjct: 62 YRIFNADGGEVEHCGNGARCFVRFVTD-HGLTDKRSVRVQVMNGVITLTLQDDGQVTVDM 120
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCV-TFGTKEGQN 253
G P L+ + VP L A + L+V+G ++ VSMGNPH V G E
Sbjct: 121 GPPELEPARVPFRPDGLPAKAEGRDTLYGLEVNGRTEWISAVSMGNPHAVQVVGDTE--- 177
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ + GP EHH+ FP R N F++++ +++RV+ERGAG TLACGTGACA
Sbjct: 178 ----AFPVLQDGPIIEHHTSFPNRVNAGFMQVVERHTIRLRVFERGAGETLACGTGACAA 233
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VVA + G + V GG L I W E V MTGPA VF GS+ L+
Sbjct: 234 VVAGIRRGLLDSPVLVHTHGGDLSIAWDGEGEPVRMTGPATTVFEGSIDLD 284
>gi|334143468|ref|YP_004536624.1| diaminopimelate epimerase [Thioalkalimicrobium cyclicum ALM1]
gi|333964379|gb|AEG31145.1| Diaminopimelate epimerase [Thioalkalimicrobium cyclicum ALM1]
Length = 291
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/283 (40%), Positives = 161/283 (56%), Gaps = 13/283 (4%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMR 139
F K HGLGNDF++VD N + +TP L DR++G+G D ++ P D+ R
Sbjct: 5 FSKMHGLGNDFMVVDAINQS-IDLTPGLVKSLADRHWGVGFDQLLVVERPKSEVADFRYR 63
Query: 140 IFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
IFN+DGSE + CGNG RCFARF+ + + L K+ V T +GLIV ++DDG+V+V+MG
Sbjct: 64 IFNADGSEVQQCGNGARCFARFVYD-QGLTQKREIPVETASGLIVLYLEDDGQVRVNMGL 122
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P + +P A + +++VD W + VSMGNPH V ++ V +
Sbjct: 123 PRFAPNSLPFVAEAQAE----NYQIEVDNQAWLIGAVSMGNPHAVLMPFED-----VTQA 173
Query: 260 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVL 319
+A +G E H FP R N F +++SP +K+RV+ERGAG T ACGTGACA +
Sbjct: 174 PVATLGAALESHPRFPERVNVAFPQLVSPQHIKLRVFERGAGETQACGTGACAAMAVLRR 233
Query: 320 EGHAERRCTVDLPGGPLDIEWKEE-DNHVYMTGPAEVVFYGSV 361
G TV LPGG L I W + D ++MTGP VF G +
Sbjct: 234 WGQVAEEVTVSLPGGDLVIRWSGQLDEPLWMTGPVAQVFTGQL 276
>gi|440760544|ref|ZP_20939653.1| Diaminopimelate epimerase [Pantoea agglomerans 299R]
gi|436425709|gb|ELP23437.1| Diaminopimelate epimerase [Pantoea agglomerans 299R]
Length = 299
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 172/304 (56%), Gaps = 13/304 (4%)
Query: 61 APESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIG 120
A ++ RT+ + + F K HGLGNDF++VD + +PE +L DR+ GIG
Sbjct: 8 ATQAYKRTNLMAYPAEQKMQFSKMHGLGNDFMVVDAV-TQNVFFSPELIRRLADRHLGIG 66
Query: 121 ADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTG 179
D ++ P + D+ RIFN+DGSE CGNG RCFARF+ +L+ L K V T
Sbjct: 67 FDQLLIVEPPYDPDLDFHYRIFNADGSEVAQCGNGARCFARFV-QLKGLTNKTDIRVSTQ 125
Query: 180 AGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMG 239
G +V + D +V+V+MGEP + VP ANK +++ + V + VSMG
Sbjct: 126 NGRMVLTVTPDDQVRVNMGEPNFEPQQVP--FRANKAENLYLLRVAEQTVM--LGAVSMG 181
Query: 240 NPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERG 299
NPHCV + +++K ++ L +GP E H FP R N F+EII+P +++RV+ERG
Sbjct: 182 NPHCVI----QVESVKTAQVEL--LGPILESHERFPDRVNVGFMEIINPEHIRLRVYERG 235
Query: 300 AGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
AG T ACG+GACA V + +G VDLPGG L I WK +YMTGPA V+ G
Sbjct: 236 AGETQACGSGACAAVACGIQQGILAPDVRVDLPGGTLHISWKGAGQPLYMTGPATHVYDG 295
Query: 360 SVLL 363
+ L
Sbjct: 296 FIHL 299
>gi|429091845|ref|ZP_19154498.1| Diaminopimelate epimerase [Cronobacter dublinensis 1210]
gi|426743506|emb|CCJ80611.1| Diaminopimelate epimerase [Cronobacter dublinensis 1210]
Length = 274
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 169/291 (58%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFAKMHGLGNDFMVVDAV-TQNVFFSPEMIRRLADRHHGVGFDQLLIVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G ++ + +D V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMILTVNEDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP+ + S VP + + ++++ + V C VSMGNPHCV ++
Sbjct: 119 GEPVFEPSLVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD ++ A + GP E H FP R N F+++++P +++RV+ERGAG T ACG+GACA
Sbjct: 164 VDDVSTAPVETLGPLMESHERFPERANIGFMQVMNPEHIRLRVFERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G + VDLPGG LDI WK N ++MTGPA V+ G + L
Sbjct: 224 AVAVGIQQGLLAAQVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDGFIHL 274
>gi|340789213|ref|YP_004754678.1| diaminopimelate epimerase [Collimonas fungivorans Ter331]
gi|340554480|gb|AEK63855.1| Diaminopimelate epimerase [Collimonas fungivorans Ter331]
Length = 287
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 164/288 (56%), Gaps = 14/288 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPG-VNGTDYT 137
L F K HG GNDF+++D + TP Q +L DR FG+GAD ++ G D+
Sbjct: 3 LKFTKMHGAGNDFVVIDAIHQ-HVDFTPAQWQRLGDRRFGVGADQMLVVEKSQAEGVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI+N+DG E E CGNG R F +F+ + + L K++ V T +G+I P+++DDG++ V M
Sbjct: 62 YRIYNADGGEVEQCGNGARAFVKFVTD-KGLTSKRAIRVETMSGIIEPKLEDDGRITVAM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSE----LDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
G P+L + VP S N D + + LDV G + ++ VSMGNPH V ++ +
Sbjct: 121 GAPVLAPAAVPFDAS-NLDSRAMGEDTLWPLDVQGKQVWISVVSMGNPHAVQV-VEDSEA 178
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V LAE GP EHH FP R N F++I+ +K+RV+ERGAG TLACGTGACA
Sbjct: 179 APV----LAE-GPLIEHHPRFPRRVNAGFMQIVDRHSIKLRVFERGAGETLACGTGACAA 233
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VVA + G + V GG L I W V MTGPA VF G +
Sbjct: 234 VVAGIRRGLLDSPVAVQTHGGELSIAWAGGQQAVMMTGPAVSVFEGEI 281
>gi|393775146|ref|ZP_10363460.1| diaminopimelate epimerase [Ralstonia sp. PBA]
gi|392717723|gb|EIZ05283.1| diaminopimelate epimerase [Ralstonia sp. PBA]
Length = 290
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/290 (41%), Positives = 160/290 (55%), Gaps = 12/290 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
LHF K HG GNDFI++D + ++ Q L DR+FGIGAD ++ D+
Sbjct: 3 LHFTKMHGAGNDFIVLDA-TAAPLDLSAAQWQALADRHFGIGADQILIVERSTRPDADFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DG E E CGNG RCF RF++E L K+S V G+I +QD+G+V VDM
Sbjct: 62 YRIFNNDGGEVEHCGNGARCFVRFVSE-RGLTSKRSIRVEVQHGIITLTLQDNGEVTVDM 120
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G PIL + VP +L + LD++G ++ VSMGNPH V
Sbjct: 121 GAPILDPAQVPFVPGALPTRAESEDTLYGLDINGQTRWISAVSMGNPHAVQVVDD----- 175
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V+ + E GP EHH FP R N +++II + + +RV+ERGAG TLACGTGACA V
Sbjct: 176 -VEAFPVREEGPLVEHHPAFPKRVNAGYMQIIDRNTIHLRVFERGAGETLACGTGACAAV 234
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VA + + V GG L I W + V MTGPA VF G++ L+
Sbjct: 235 VAGIRRNLLDTPVRVKTHGGWLTIAWGSATDSVRMTGPAVTVFEGTIDLD 284
>gi|167568331|ref|ZP_02361205.1| diaminopimelate epimerase [Burkholderia oklahomensis C6786]
Length = 293
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/294 (41%), Positives = 163/294 (55%), Gaps = 16/294 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D P +T Q L DR+FGIGAD ++ P V G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPALTDAQVRALADRHFGIGADQLLLVEKPTVEGADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L K S V G+I+ +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRD-NGLTDKASVRVEVKHGVIMLTMQDNGEVVVDM 121
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTF-GTKEGQN 253
G P+ + + VP + L ++ + LDV+G ++ VSMGNPH V E
Sbjct: 122 GAPVFEPARVPFDASGLEGRREGADTLWPLDVNGATRWISVVSMGNPHAVQIVDDAEAFP 181
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ VD GP E H F R N F++ +S ++K+RV+ERGAG TLACGTGACA
Sbjct: 182 VLVD-------GPAIERHPRFAQRVNAGFMQRVSRREVKLRVYERGAGETLACGTGACAA 234
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLLN 364
V A + G + TV GG L I W ++E+ + M GPA VF G + L+
Sbjct: 235 VAAGIRRGQLDSPVTVHTHGGTLTISWDGARDENAPLLMAGPATTVFEGVIDLS 288
>gi|411011015|ref|ZP_11387344.1| diaminopimelate epimerase [Aeromonas aquariorum AAK1]
Length = 275
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 165/289 (57%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + + + + KL DR+FGIG D ++ P + D+
Sbjct: 1 MIDFSKMHGLGNDFMVVDG-VTQKVFFSNDVIKKLADRHFGIGFDQLLLVEPPYDPELDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ L+ L + V T G IV +++ + +V V+
Sbjct: 60 HYRIFNADGSEVEQCGNGARCFARFV-RLKGLINRDRIAVSTARGRIVLQLEGENQVTVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MG P + +P + +++++ + V C VSMGNPHCV +
Sbjct: 119 MGVPQFEPGKIPFRAQKAEKTYLLRAQ------EHTVMCGAVSMGNPHCVI------EVP 166
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V + +GP E H FP R N F+E ++ S++K+RV+ERG G TLACGTGACA V
Sbjct: 167 SVADAPVETLGPIMERHERFPERVNVGFMETVNASEIKLRVFERGVGETLACGTGACAAV 226
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G + R TV LPGG L I WK VYMTGPAE VF G + L
Sbjct: 227 VIGISQGKLKERVTVTLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL 275
>gi|386266518|ref|YP_005830010.1| diaminopimelate epimerase [Haemophilus influenzae R2846]
gi|309973754|gb|ADO96955.1| Diaminopimelate epimerase [Haemophilus influenzae R2846]
Length = 274
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 167/288 (57%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
+ F K HGLGNDF++VD + TPE +L +R+ GIG D + I P D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++G E+H FP R N F++II+ +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IQTANVEQLGSLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G VDLPGG L IEW + +YMTG A ++ G + L
Sbjct: 227 VGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274
>gi|269798631|ref|YP_003312531.1| diaminopimelate epimerase [Veillonella parvula DSM 2008]
gi|269095260|gb|ACZ25251.1| diaminopimelate epimerase [Veillonella parvula DSM 2008]
Length = 277
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/286 (41%), Positives = 165/286 (57%), Gaps = 23/286 (8%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ K HGLGNDFIL + T T + A +LCDR GIGADG+ +P D M
Sbjct: 1 MKLTKMHGLGNDFILFADPQGTSKDYT-DLAIRLCDRRTGIGADGLAILVPS-ETCDVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KVK 194
RI NSDGSE EMCGN +RCFA++ E K++FT+ T AG++ P + + +V
Sbjct: 59 RIINSDGSEAEMCGNAIRCFAKYAYE-HGETTKETFTIETLAGVMKPTLTIENGIVTQVT 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG+P KA D+P +++ +K V+ +LD++G V+ V +G PH F
Sbjct: 118 VDMGKPFFKAQDIPMNVNMDK---VIDVDLDINGETVTVSSVLLGVPHTEVF-------- 166
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+D + A + GP E H FPA TN ++E+++ +K+R WERGAGATLACGTG+C
Sbjct: 167 -IDDITKAPVTTQGPILEKHDAFPANTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSC 225
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVF 357
A + + +G R V+L G L I + ED V MTGPAE VF
Sbjct: 226 ASAIMSFEKGLTGREVDVELYLGTLHISYL-EDGTVLMTGPAEEVF 270
>gi|312884203|ref|ZP_07743914.1| diaminopimelate epimerase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368131|gb|EFP95672.1| diaminopimelate epimerase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 276
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 164/286 (57%), Gaps = 17/286 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
HF K HGLGNDF++VD + +P+ +L DRN GIG D + I P TD+
Sbjct: 3 FHFSKMHGLGNDFVVVDCI-TQNVFFSPDLIRRLADRNTGIGFDQLLIVEAPYDPETDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDG E E CGNG RCFARF+ ++ L K +V T G I+ I DD +V V+M
Sbjct: 62 YRIFNSDGGEVEQCGNGARCFARFV-RMKGLTNKYRISVSTKKGKIILNIGDDDQVTVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
G P + S +P + +++++ + C VS+GNPH VT +E +
Sbjct: 121 GVPEFEPSKIPFKAKQREKTYILRAQ------DKTLFCGAVSLGNPHVVTV-VEELSDAL 173
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+D EIGP E H FP R N F++++S S++K+RV+ERGAG T ACGTGACA V
Sbjct: 174 ID-----EIGPVLESHERFPERVNAGFMKVLSRSEIKLRVYERGAGETQACGTGACAAVA 228
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+ +G + TV LPGG L I W+ + +YMTGPA VF G +
Sbjct: 229 VGIAQGLLDENVTVHLPGGTLKIAWQGDGEPLYMTGPASHVFDGQL 274
>gi|134096113|ref|YP_001101188.1| diaminopimelate epimerase [Herminiimonas arsenicoxydans]
Length = 276
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 117/283 (41%), Positives = 159/283 (56%), Gaps = 12/283 (4%)
Query: 85 HGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADG-VIFAMPGVNGTDYTMRIFNS 143
HG GNDF+++D N + TP Q L DR FG+GAD ++ P G D+ RI+N+
Sbjct: 2 HGAGNDFVVIDAINQS-IHFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNA 60
Query: 144 DGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILK 203
DG E E CGNG R F +F+ + + L KQ+ V T +G+I P ++ +G++ VDMG PIL
Sbjct: 61 DGGEVEQCGNGARAFVKFVTD-KKLTDKQAIRVETMSGVIEPRLEANGQITVDMGAPILT 119
Query: 204 ASDVPTSLSA---NKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLN 260
DVP +S + + LD+ G ++ +SMGNPH V D
Sbjct: 120 PEDVPFDVSGLLCKAEGADTLWPLDIKGETHWISVLSMGNPHAVQVVAD------ADHAP 173
Query: 261 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLE 320
+ E G EHH FP R N F++II P Q+K+RV+ERGAG TLACGTGACA VV+ +
Sbjct: 174 VREDGVLIEHHPRFPKRVNAGFMQIIDPHQIKLRVFERGAGETLACGTGACAAVVSGIRR 233
Query: 321 GHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
G V GG L I W +++ V +TGPA VF G + L
Sbjct: 234 GLLASPIKVQTRGGELSIAWAGDNSPVLLTGPAVTVFEGEIEL 276
>gi|148827940|ref|YP_001292693.1| diaminopimelate epimerase [Haemophilus influenzae PittGG]
gi|166224260|sp|A5UHQ4.1|DAPF_HAEIG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|148719182|gb|ABR00310.1| diaminopimelate epimerase [Haemophilus influenzae PittGG]
Length = 274
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 167/288 (57%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
+ F K HGLGNDF++VD + TPE +L +R+ GIG D + I P D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ +V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E H FP R N F++II+ +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G VDL GG L IEW + +YMTG A ++ G + L
Sbjct: 227 VGIMQGLLNNNVQVDLSGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274
>gi|325957877|ref|YP_004289343.1| diaminopimelate epimerase [Methanobacterium sp. AL-21]
gi|325329309|gb|ADZ08371.1| Diaminopimelate epimerase [Methanobacterium sp. AL-21]
Length = 292
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 173/301 (57%), Gaps = 25/301 (8%)
Query: 75 ESGFLHFVKYHGLGNDFILVDNRNST---EPRITPEQAAKLCDRNFGIGADGVIFAMPGV 131
E + F K HGLGND++++D E + PE ++C R F +GADGVIF P
Sbjct: 3 ERTLVTFSKMHGLGNDYVVIDESKKIIVPEDK-KPEICEEICRRGFSVGADGVIFVTPAS 61
Query: 132 NG-TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDD 190
N D RIFNSDGSE EMCGNG+RCFA+++ E E L K+ G + EI+ D
Sbjct: 62 NEEADIRFRIFNSDGSEAEMCGNGIRCFAKYVYENEILQNKEMLVETLGG---IKEIELD 118
Query: 191 ---GKVK---VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCV 244
G+V+ VDMG P K+ ++P + + + +ELDV+G N+T V++GNPH V
Sbjct: 119 VMGGEVRSSSVDMGIPTFKSVEIPMK---TEKEEFLDAELDVNGTTVNLTAVNVGNPHAV 175
Query: 245 TFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATL 304
F +++++L +GP E+H FP +TN FV +I+ ++++M WERGAG TL
Sbjct: 176 IFTEN------IEEIDLNVMGPSIENHPAFPEKTNVHFVSVINRNEIEMITWERGAGFTL 229
Query: 305 ACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKE--EDNHVYMTGPAEVVFYGSVL 362
ACGTGA A V+A G + V LPGG L I E E+ ++M G A +VF G +
Sbjct: 230 ACGTGATASVMAGYKLGKLDEEVEVHLPGGELLIIVYEMGEETTLFMEGEAVLVFDGVME 289
Query: 363 L 363
L
Sbjct: 290 L 290
>gi|237809855|ref|YP_002894295.1| diaminopimelate epimerase [Tolumonas auensis DSM 9187]
gi|259595064|sp|C4LDU8.1|DAPF_TOLAT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|237502116|gb|ACQ94709.1| diaminopimelate epimerase [Tolumonas auensis DSM 9187]
Length = 276
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 123/290 (42%), Positives = 167/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + + E +L DR+FGIG D ++ P + D+
Sbjct: 2 LIQFSKMHGLGNDFVVVDGV-TQKVFFNAETLKRLGDRHFGIGFDQLLLVEPPYDPDLDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE + CGNG RCFARF+ L+ L K V T +G IV +++D+ +V V+
Sbjct: 61 HYRIFNADGSEVQQCGNGARCFARFV-RLKGLTNKDRIAVSTVSGRIVLQLEDNDQVTVN 119
Query: 197 MGEPILKASDVP-TSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQN 253
MG P + + +P +L A K + +E V C VSMGNPHCV +
Sbjct: 120 MGVPEFEPAKIPFRALKAEKLYLLRVAE-------QTVMCGVVSMGNPHCVI------EV 166
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V + +GPK E FP R N F+E++S S++ +RV+ERGAG TLACGTGACA
Sbjct: 167 PSVKDAPVETLGPKLESFDRFPERINVGFMEVVSASEINLRVYERGAGETLACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VV + + + R V+LPGG L I W + VYMTGPAE VF G + L
Sbjct: 227 VVVGIQQEKLKGRVKVNLPGGSLYISWNGPGSPVYMTGPAEHVFDGQIEL 276
>gi|409408078|ref|ZP_11256522.1| diaminopimelate epimerase [Herbaspirillum sp. GW103]
gi|386432534|gb|EIJ45361.1| diaminopimelate epimerase [Herbaspirillum sp. GW103]
Length = 287
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 121/290 (41%), Positives = 160/290 (55%), Gaps = 14/290 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HG GNDF+++D N +TP Q + DR FGIGAD ++ G D+
Sbjct: 3 IKFTKMHGAGNDFVVLDAVNQA-ISLTPAQWQFIADRRFGIGADQMLVVEKAQGAGVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI+N+DG E E CGNG R F RF+ E + L K++ V T +G+I P +++DG++ VDM
Sbjct: 62 YRIYNADGGEVEQCGNGARAFVRFVTE-KGLTDKRAIRVETMSGVIEPRLEEDGQITVDM 120
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCV-TFGTKEGQN 253
G PIL +DVP +L + L+V G ++ VSMGNPH V E
Sbjct: 121 GAPILTPADVPFDSRNLQYRTEADDTLWPLEVAGKTTWISVVSMGNPHAVQVVEDSEAAP 180
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ VD GP EHH FP R N F++++ + +RV+ERGAG TLACGTGACA
Sbjct: 181 VLVD-------GPLIEHHERFPKRVNAGFMQVVDRHHINLRVYERGAGETLACGTGACAA 233
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VVA V G + V GG L+I W V MTGPA VF G + L
Sbjct: 234 VVAGVRRGLLDSPVAVQTHGGVLNIAWAGPGEPVMMTGPAVTVFEGEIEL 283
>gi|172062034|ref|YP_001809686.1| diaminopimelate epimerase [Burkholderia ambifaria MC40-6]
gi|171994551|gb|ACB65470.1| Diaminopimelate epimerase [Burkholderia ambifaria MC40-6]
Length = 282
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 160/287 (55%), Gaps = 14/287 (4%)
Query: 85 HGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNS 143
HG GNDF+++D + P +T Q L +R+FGIGAD ++ P V+G D+ RIFN
Sbjct: 2 HGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFKYRIFNC 61
Query: 144 DGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILK 203
DG E E CGNG RCF +F+++ L K+S V GLI +QD+G+V VDMG P+
Sbjct: 62 DGGEVEHCGNGARCFVKFVSD-RGLTDKRSVRVQVMKGLITLTLQDNGEVVVDMGAPVFA 120
Query: 204 ASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLN 260
+ VP + L + LDV G ++ VSMGNPH V V+
Sbjct: 121 PAQVPFDASGLDGRAEGRDTLWPLDVGGATRWISAVSMGNPHAVQVVDD------VEAYP 174
Query: 261 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLE 320
+ E GP E H+ FP R N F++I+S ++K+RV+ERGAG TLACGTGACA V A +
Sbjct: 175 VLEEGPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIRR 234
Query: 321 GHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLLN 364
G + TV GG L I W ++E + M GPA VF G + L
Sbjct: 235 GLLDSPVTVHTHGGTLTIGWDGARDEAAALMMAGPAATVFEGEIDLT 281
>gi|229593313|ref|YP_002875432.1| diaminopimelate epimerase [Pseudomonas fluorescens SBW25]
gi|229365179|emb|CAY53445.1| diaminopimelate epimerase [Pseudomonas fluorescens SBW25]
Length = 276
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 132/290 (45%), Positives = 173/290 (59%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPSNPEVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKSGVIELDIRSDGQISVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P + + V LDVDG ++ VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFEAT----EQAVSYALDVDGKTVDIAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ +N A E GPK EHH FPAR N F+++I ++ ++RVWERGAG T ACGTGACA
Sbjct: 167 NDINNAPVHEWGPKIEHHPRFPARVNVGFLQVIDRTRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPASRVYEGQVRL 276
>gi|268634733|gb|ACZ16581.1| diaminopimelate epimerase [uncultured bacterium]
Length = 276
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 166/282 (58%), Gaps = 13/282 (4%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIF-AMPGVNGTDYTMR 139
F K G+GNDF++VD S + Q ++L RNFGIG D ++ P D+ R
Sbjct: 5 FTKMQGIGNDFMVVDAI-SQPVYLNQGQISQLAHRNFGIGFDQLLMIEAPQHPEADFHFR 63
Query: 140 IFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
IFN+DGSE CGNG R A+++ + + L K+ + T + ++D+G + ++MG+
Sbjct: 64 IFNADGSEAGHCGNGARAVAKYVRQ-KGLTWKRELRLSTNTATMNTVMEDNGLITINMGK 122
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P L+ +P + + ++ D +G+++ + VSMGNPHCV Q +DK
Sbjct: 123 PRLEPEKIPLRFAQQSETYMI----DAEGIRYKIGAVSMGNPHCVL------QVEDIDKA 172
Query: 260 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVL 319
+ ++GP HHS FPA+ N F++++ +++K+RV+ERG G TLACGTGACA VVA L
Sbjct: 173 AVGKVGPILSHHSYFPAQANVGFMQVVDSNEIKLRVFERGVGETLACGTGACAAVVAGRL 232
Query: 320 EGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+ + + V LPGG L I W + + VYMTGPA+VVF G +
Sbjct: 233 QKILDEKVKVTLPGGSLWIRWAGKGSPVYMTGPAKVVFEGQI 274
>gi|167561113|ref|ZP_02354029.1| diaminopimelate epimerase [Burkholderia oklahomensis EO147]
Length = 293
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 121/294 (41%), Positives = 162/294 (55%), Gaps = 16/294 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D P +T Q L DR+FGIGAD ++ P V G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPALTDAQVRALADRHFGIGADQLLLVEKPTVEGADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L K S V G+I +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRD-NGLTDKASVRVEVKHGVITLTMQDNGEVVVDM 121
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTF-GTKEGQN 253
G P+ + + VP + L ++ + LDV+G ++ VSMGNPH V E
Sbjct: 122 GAPVFEPARVPFDASGLEGRREGADTLWPLDVNGATRWISVVSMGNPHAVQIVDDAEAFP 181
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ VD GP E H F R N F++ +S ++K+RV+ERGAG TLACGTGACA
Sbjct: 182 VLVD-------GPAIERHPRFAQRVNAGFMQRVSRREVKLRVYERGAGETLACGTGACAA 234
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLLN 364
V A + G + TV GG L I W ++E+ + M GPA VF G + L+
Sbjct: 235 VAAGIRRGQLDSPVTVHTHGGTLTISWDGARDENAPLLMAGPATTVFEGVIDLS 288
>gi|29345958|ref|NP_809461.1| diaminopimelate epimerase [Bacteroides thetaiotaomicron VPI-5482]
gi|383121437|ref|ZP_09942150.1| diaminopimelate epimerase [Bacteroides sp. 1_1_6]
gi|32171444|sp|Q8AAB7.1|DAPF_BACTN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|29337852|gb|AAO75655.1| diaminopimelate epimerase [Bacteroides thetaiotaomicron VPI-5482]
gi|251842714|gb|EES70794.1| diaminopimelate epimerase [Bacteroides sp. 1_1_6]
Length = 267
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/288 (42%), Positives = 166/288 (57%), Gaps = 32/288 (11%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAA-KLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K HG GND+I VD + P PE+ A + + GIG+DG+I + + D++
Sbjct: 5 IKFTKMHGAGNDYIYVDT--TRYPIAAPEKKAIEWSKFHTGIGSDGLIL-IGSSDKADFS 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KV 193
MRIFN+DGSE MCGNG RC +++ E L K+ T+ T +G+ V ++ +G V
Sbjct: 62 MRIFNADGSEAMMCGNGSRCVGKYVYEY-GLTAKKEITLDTRSGIKVLKLHVEGGKVTAV 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG P+ T DQ +S T VSMGNPH VTF
Sbjct: 121 TVDMGSPL------ETEAVDFGDQFPFQS-----------TRVSMGNPHLVTFVED---- 159
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ ++NL EIGP+ E++ +FP RTN EF +I+ ++MRVWERG+G T ACGTGACA
Sbjct: 160 --ITQINLPEIGPQLENYHLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACAT 217
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VAAVL G A R+C + + GG + IEW+E H+ MTGPA VF G +
Sbjct: 218 AVAAVLHGLAGRKCDIIMDGGTVTIEWEEATGHILMTGPATKVFDGEM 265
>gi|6729756|pdb|1BWZ|A Chain A, Diaminopimelate Epimerase From Hemophilus Influenzae
Length = 274
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 167/288 (57%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
+ F K HGLGNDF++VD + TPE +L +R+ GIG D + I P D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ +V T G +V ++D +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDISVSTQKGNMVLTVKDMNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E H FP R N F++II+ +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G VDLPGG L IEW + +YMTG A ++ G + L
Sbjct: 227 VGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274
>gi|383936943|ref|ZP_09990360.1| diaminopimelate epimerase [Rheinheimera nanhaiensis E407-8]
gi|383701998|dbj|GAB60451.1| diaminopimelate epimerase [Rheinheimera nanhaiensis E407-8]
Length = 276
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 124/292 (42%), Positives = 166/292 (56%), Gaps = 23/292 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
LHF K HGLGNDF++VD S +T EQ L DR+ GIG D ++ P + D+
Sbjct: 2 LLHFSKMHGLGNDFMMVDAV-SQNVFLTKEQIKALADRHTGIGFDQLLMVEPPYDPELDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFA+F+ L K V T +G IV ++ DG+V V+
Sbjct: 61 HYRIFNADGSEVEQCGNGARCFAKFV-RARGLTNKHKIGVSTKSGKIVLYVETDGQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MG P L + VP + +++++ + + C VSMGNPH VT
Sbjct: 120 MGVPQLDPARVPFKAQKQELTYILRAD------EHTILCGVVSMGNPHAVT--------- 164
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+VD + A + GP FE H FP R N F+++++P +K+RVWERGAG T ACGTGAC
Sbjct: 165 EVDDILTAPVQVQGPLFELHERFPERANIGFMQVLNPGHIKLRVWERGAGETQACGTGAC 224
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A VV L+ +++ VDLPGG L I W + MTGPAE V+ G + L
Sbjct: 225 AAVVVGQLQKKLQQQVRVDLPGGSLHIRWNGPGQPLKMTGPAEHVYDGQIQL 276
>gi|410632502|ref|ZP_11343160.1| diaminopimelate epimerase [Glaciecola arctica BSs20135]
gi|410147928|dbj|GAC20027.1| diaminopimelate epimerase [Glaciecola arctica BSs20135]
Length = 276
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 165/289 (57%), Gaps = 19/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++DN + + E+ +L DRNFGIG D ++ P + D+
Sbjct: 3 IQFSKMHGLGNDFVVIDNV-TQNVFFSKEKIQQLSDRNFGIGFDQLLMVEPPYDPDQDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DG+E CGNG RCFARF+ +++ L + V T AG +V ++ DG+V V+M
Sbjct: 62 YRIFNADGTEVSQCGNGARCFARFV-KMKGLTNRNKIVVSTKAGRMVLYLEKDGQVTVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P + S +P + ANK + + L + VSMGNPHCV L VD
Sbjct: 121 GVPEFEPSLIP--IKANKREKIYI--LRAQEQTFFCGAVSMGNPHCV---------LLVD 167
Query: 258 KLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ A++ GP E H F N F++II+ S +K+RV+ERGAG TLACG+GACA V
Sbjct: 168 DVQTADVATMGPLLEKHERFSEGANVGFMQIINHSHIKLRVYERGAGETLACGSGACAAV 227
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
L+ + VDLPGG L I W+ N + MTG AE +F G + L
Sbjct: 228 AVGQLQNRLSKDVRVDLPGGSLKIRWQGNGNELKMTGAAEHIFDGYINL 276
>gi|378581795|ref|ZP_09830438.1| diaminopimelate epimerase [Pantoea stewartii subsp. stewartii
DC283]
gi|377815533|gb|EHT98645.1| diaminopimelate epimerase [Pantoea stewartii subsp. stewartii
DC283]
Length = 274
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 166/286 (58%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPELIRRLADRHLGVGFDQLLIVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ +L+ L K V T AG +V + D V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-QLKGLTNKSDIRVSTQAGRMVLSVTPDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP + VP ANK +++ + V + VSMGNPHCV + ++ K
Sbjct: 119 GEPNFEPHQVP--FRANKAENLYLLRVAEQTVMFG--AVSMGNPHCVI----QVESTKTA 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++ L +GP E H FP R N F+EII+P +++RV+ERGAG T ACG+GACA V
Sbjct: 171 QVEL--LGPILESHERFPERVNVGFMEIINPEHIRLRVYERGAGETQACGSGACAAVACG 228
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G ++ VDLPGG L I WK ++MTGPA V+ G + L
Sbjct: 229 IQQGILSQKVRVDLPGGTLHIAWKGAGQPLFMTGPATHVYDGFIHL 274
>gi|388543887|ref|ZP_10147176.1| diaminopimelate epimerase [Pseudomonas sp. M47T1]
gi|388277715|gb|EIK97288.1| diaminopimelate epimerase [Pseudomonas sp. M47T1]
Length = 276
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 131/290 (45%), Positives = 171/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I++DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVETKSGVIELDIRNDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P A +++VDG N+ VSMGNPH V LKV
Sbjct: 120 MGPPRLVPADIPFVAPAQAK----NYDIEVDGQVVNLAAVSMGNPHAV---------LKV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A ++GPK EHH FPAR N F+ ++ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINAAPVHQLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVLMTGPAVRVYEGQVRL 276
>gi|388467553|ref|ZP_10141763.1| diaminopimelate epimerase [Pseudomonas synxantha BG33R]
gi|388011133|gb|EIK72320.1| diaminopimelate epimerase [Pseudomonas synxantha BG33R]
Length = 276
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 173/290 (59%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPSNPEVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I +I+ DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKGGVIELDIRSDGQISVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P + + + LDVDG ++ VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFQAT----EQALSYPLDVDGRTVDIAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ +N A E+GPK EHH FPAR N F+++I ++ ++RVWERGAG T ACGTGACA
Sbjct: 167 NDINNAPVHELGPKIEHHPRFPARVNVGFLQVIDRTRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPASRVYEGQVRL 276
>gi|398815024|ref|ZP_10573697.1| diaminopimelate epimerase [Brevibacillus sp. BC25]
gi|398035351|gb|EJL28595.1| diaminopimelate epimerase [Brevibacillus sp. BC25]
Length = 286
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 127/293 (43%), Positives = 180/293 (61%), Gaps = 22/293 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT----PEQAAKLCDRNFGIGADGVIFAMPGVNGT 134
+ F K HGLGND++ V N E ++ PE A ++ +RNFGIG DG+I MP
Sbjct: 1 MKFTKLHGLGNDYVYV---NCFEEDLSGVDLPELARRVSERNFGIGGDGLILIMPSER-A 56
Query: 135 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ--DDGK 192
D+ MR+FN+DGSE + CGNG+RC ++++ + L +++FTV T G + P + DGK
Sbjct: 57 DFRMRVFNNDGSEAKNCGNGLRCVSKYVYD-HGLTQQKTFTVETLGGTVTPVVSLGTDGK 115
Query: 193 VK---VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTK 249
V +DMGEP + + +P ++ ++ V + ++V G + +T +SMGNPH + F +
Sbjct: 116 VDQVTIDMGEPRFERAAIP--MTGIPEEQVREEVIEVGGTAFTMTAISMGNPHAILFVDE 173
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
V + ++ GP E+H FP RTN EF++I++ ++ RVWERG+G TLACGTG
Sbjct: 174 ------VKEEDVRHYGPMIEYHEWFPERTNVEFIQILNQEEILFRVWERGSGVTLACGTG 227
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
ACA VAA L G R+ TV L GG L IEWKE DN V+MTGPA VF G L
Sbjct: 228 ACAAAVAAHLSGKTGRKVTVHLAGGDLFIEWKEADNRVHMTGPATEVFSGKYL 280
>gi|319897750|ref|YP_004135947.1| diaminopimelate epimerase [Haemophilus influenzae F3031]
gi|317433256|emb|CBY81631.1| diaminopimelate epimerase [Haemophilus influenzae F3031]
Length = 274
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 167/288 (57%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
+ F K HGLGNDF++VD + TPE +L +R+ GIG D + I P D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFA+F+ L+ L K+ +V G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFAQFVT-LKGLTNKKDISVSAQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E H FP R N F++II+ +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G VDLPGG L IEW + +YMTG A ++ G + L
Sbjct: 227 VGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274
>gi|253997887|ref|YP_003049950.1| diaminopimelate epimerase [Methylovorus glucosetrophus SIP3-4]
gi|313199952|ref|YP_004038610.1| diaminopimelate epimerase [Methylovorus sp. MP688]
gi|253984566|gb|ACT49423.1| diaminopimelate epimerase [Methylovorus glucosetrophus SIP3-4]
gi|312439268|gb|ADQ83374.1| diaminopimelate epimerase [Methylovorus sp. MP688]
Length = 277
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/286 (40%), Positives = 163/286 (56%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
L F K G+GNDF+++D S +TP+Q + DR+FG+G D ++ +
Sbjct: 4 LEFTKMQGIGNDFVVIDAY-SQPVSLTPDQIRAISDRHFGVGCDQLLIVEHATTPEAAFR 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DG E E CGNG RCF +F+ + + L ++ V T GLI P ++D+G+V V+M
Sbjct: 63 YRIFNADGGEVEQCGNGARCFVKFVHD-QGLTQQREICVETARGLIYPRLEDNGEVTVNM 121
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P +D+P A QS+ +L + V+ V SMGNPH V VD
Sbjct: 122 GPPSFLPADLP--FEAETIQSLYPLQLAHETVE--VAIASMGNPHAVQLVDN------VD 171
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+AE GP+ E H FP R N F++I+ P +++RV+ERG+G TLACGTGACA VV+
Sbjct: 172 TAPVAEQGPQIESHPRFPKRVNAGFMQIVDPHHIRLRVFERGSGETLACGTGACAAVVSG 231
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ GH V GG L+I W D+ V+MTGPA VF G++ L
Sbjct: 232 IRLGHLVSPVRVSTRGGELNIAWTGGDSPVWMTGPAATVFTGAIHL 277
>gi|392412036|ref|YP_006448643.1| diaminopimelate epimerase [Desulfomonile tiedjei DSM 6799]
gi|390625172|gb|AFM26379.1| diaminopimelate epimerase [Desulfomonile tiedjei DSM 6799]
Length = 281
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/288 (42%), Positives = 171/288 (59%), Gaps = 16/288 (5%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F+K HG NDF++ + N T + +Q AKLCDR G+GADGVI + D+ M
Sbjct: 5 FLKMHGTMNDFVIFHDLNDTV-SLAGDQVAKLCDRRAGVGADGVIVVRQS-SIADFFMDY 62
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDD-----GKVKV 195
N+DGS EMCGNG+RC A+++ E + L K V T +G+ + ++ GK+KV
Sbjct: 63 INADGSLAEMCGNGIRCLAKYVYE-KGLTAKMRLPVETRSGVKILDLIPGPDGTIGKIKV 121
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
DMG P+ +P ++ + V+ ++ +G ++ T VSMGNPHCV F ++ L
Sbjct: 122 DMGAPVFDPERIPAAV--KHEPPVIDLPIEAEGRLFHATLVSMGNPHCVIFVDEDPAPLP 179
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
GP E H++FPA+TN EF+ +I ++L+MRVWERG+G T +CGTGACA V
Sbjct: 180 ------QRYGPSLEKHALFPAKTNVEFIRVIDRTRLEMRVWERGSGETYSCGTGACAAAV 233
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
AA L+G E TV+L GG L+IEWK N V MTG A VVF G + +
Sbjct: 234 AANLKGLTESSATVELLGGELEIEWKGSSNPVIMTGSAVVVFDGKITI 281
>gi|334702884|ref|ZP_08518750.1| diaminopimelate epimerase [Aeromonas caviae Ae398]
Length = 275
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 164/289 (56%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + + + + KL DR+FGIG D ++ P + D+
Sbjct: 1 MIEFSKMHGLGNDFMVVDG-VTQKVFFSNDIIKKLADRHFGIGFDQLLLVEPPYDPELDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ L+ L + V T G I +++ + +V V+
Sbjct: 60 HYRIFNADGSEVEQCGNGARCFARFV-RLKGLVNRDRIAVSTARGRITLQLEGENQVTVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MG P + +P + +++++ V C VSMGNPHCV +
Sbjct: 119 MGVPQFEPGKIPFRAQKAEKTYLLRAQ------DHTVMCGAVSMGNPHCVI------EVP 166
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V + +GP E H FP R N F+E+++ S++K+RV+ERG G TLACGTGACA V
Sbjct: 167 SVADAPVETLGPIMERHERFPERVNVGFMEMVNASEIKLRVFERGVGETLACGTGACAAV 226
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G + R TV LPGG L I WK VYMTGPAE VF G + L
Sbjct: 227 VIGISQGKLKERVTVTLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL 275
>gi|167835021|ref|ZP_02461904.1| diaminopimelate epimerase [Burkholderia thailandensis MSMB43]
Length = 289
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/295 (40%), Positives = 162/295 (54%), Gaps = 20/295 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D + P +T Q L DR+FGIGAD ++ P V+G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L + S V G+I +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRD-RGLTDEASVRVEVKHGVITLTMQDNGEVVVDM 121
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + + VP + L ++ + L V+G ++ VSMGNPH V
Sbjct: 122 GAPVFEPARVPFDASGLEGRREGADTLWPLPVNGATRWISVVSMGNPHAVQI-------- 173
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
VD A + GP E H FP R N F++I+S ++ +RV+ERGAG TLACGTGAC
Sbjct: 174 -VDDAKAAPVLADGPAIERHPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGAC 232
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLL 363
A V A + G + TV GG L I W ++E + M GPA VF G + L
Sbjct: 233 AAVAAGIRRGQLDSPVTVHTHGGTLTISWDGARDERAPLKMAGPATTVFEGVIEL 287
>gi|359688885|ref|ZP_09258886.1| diaminopimelate epimerase [Leptospira licerasiae serovar Varillal
str. MMD0835]
gi|418749067|ref|ZP_13305359.1| diaminopimelate epimerase [Leptospira licerasiae str. MMD4847]
gi|418756783|ref|ZP_13312971.1| diaminopimelate epimerase [Leptospira licerasiae serovar Varillal
str. VAR 010]
gi|384116454|gb|EIE02711.1| diaminopimelate epimerase [Leptospira licerasiae serovar Varillal
str. VAR 010]
gi|404276136|gb|EJZ43450.1| diaminopimelate epimerase [Leptospira licerasiae str. MMD4847]
Length = 289
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/294 (40%), Positives = 166/294 (56%), Gaps = 21/294 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+HF K G+GND++ VD + R++PEQ KL DRNFGIG DGVIF + N D+ M
Sbjct: 4 VHFTKMEGIGNDYVYVD-ATKDDLRLSPEQIQKLSDRNFGIGGDGVIF-IRASNKGDFQM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG-----KV 193
++N+DGS EMCGNG+RC +++ + L K+ + TGAG++ +++ +G +V
Sbjct: 62 DMYNADGSSSEMCGNGIRCVGKYVFD-HGLTNKKQPKIETGAGILELDLKVNGTGKVEQV 120
Query: 194 KVDMGEPILKASDVPTSLS-----ANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGT 248
VDMG+PIL S +P + S + + VSMGNPHC+ +
Sbjct: 121 SVDMGKPILVPSLIPVKWENENPILEQPLSFLSGLPGYSSYNLKFSAVSMGNPHCIIYVE 180
Query: 249 KEGQNLKVDKLNLAEIGPKFEHHS-VFPARTNTEFVEIISPSQLKMRVWERGAGATLACG 307
D+ + EIGP E+++ +FP R N EFV + L R WERGAG TLACG
Sbjct: 181 DP------DQFPVREIGPLIENYTELFPRRVNVEFVSLRGKDHLYQRTWERGAGETLACG 234
Query: 308 TGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
TGACAV+ A+ L G + +DL GG L ++ E HV MTGPA VF G V
Sbjct: 235 TGACAVMTASHLNGKTGKDVRIDLRGGTLRVQLLES-GHVLMTGPATEVFSGVV 287
>gi|394989777|ref|ZP_10382610.1| hypothetical protein SCD_02203 [Sulfuricella denitrificans skB26]
gi|393791277|dbj|GAB72249.1| hypothetical protein SCD_02203 [Sulfuricella denitrificans skB26]
Length = 276
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 164/287 (57%), Gaps = 13/287 (4%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF++ D S ++P Q + DR+FGIG D ++ D+
Sbjct: 2 LLKFTKMHGLGNDFVVFDA-ISQSVNLSPAQFQFIADRHFGIGCDQILLVERATRLDADF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E E CGNG RCF RF+ + + L+ K V T +G+IVP ++ +G+V V+
Sbjct: 61 RYRIFNADGGEVEQCGNGARCFVRFVHD-KALSPKTEIRVETASGIIVPRLEPNGQVTVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P + ++VP ++ + L ++G V+ +SMGNPH V V
Sbjct: 120 MGVPRFELTEVPFI----AEKRALTYLLGLEGKLAEVSVLSMGNPHAVQLVED------V 169
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
D +A GP+ E H FPAR N F++++ ++K+RV+ERGAG TLACGTGACA VVA
Sbjct: 170 DGAAVAVEGPQIESHPSFPARVNAGFMQVLDRGRIKLRVYERGAGETLACGTGACAAVVA 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
++ G + V GG L I W+ E + V MTGPA VF G + L
Sbjct: 230 GIMRGLLDDEVRVTTRGGELIIRWEGEGHPVRMTGPAVTVFEGEINL 276
>gi|159795185|pdb|2Q9H|A Chain A, Crystal Structure Of The C73s Mutant Of Diaminopimelate
Epimerase
Length = 274
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 167/288 (57%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
+ F K HGLGNDF++VD + TPE +L +R+ GIG D + I P D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE GNG RCFARF+ L+ L K+ +V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQSGNGARCFARFVT-LKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E H FP R N F++II+ +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G VDLPGG L IEW + +YMTG A ++ G + L
Sbjct: 227 VGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274
>gi|398878211|ref|ZP_10633336.1| diaminopimelate epimerase [Pseudomonas sp. GM67]
gi|398200468|gb|EJM87379.1| diaminopimelate epimerase [Pseudomonas sp. GM67]
Length = 276
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 133/290 (45%), Positives = 169/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKSGIIELDIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P D LDVDG + VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFV----ADTQAPSYSLDVDGTTVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I ++ ++RVWERGAG T ACGTGACA
Sbjct: 167 SDINNAPVHELGPKIEHHPRFPARVNVGFLQVIDRNRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVLMTGPAVRVYEGQVRL 276
>gi|407693625|ref|YP_006818414.1| diaminopimelate epimerase [Actinobacillus suis H91-0380]
gi|407389682|gb|AFU20175.1| diaminopimelate epimerase [Actinobacillus suis H91-0380]
Length = 274
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 173/288 (60%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++D + +T + KL DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVIDGV-TQNVYLTEDVIRKLADRHTGVGFDQLLLVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T G +V ++ + KV+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKQDIRVSTAKGKMVLTLKGEEKVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + VP + + + +++++L V C VSMGNPHCV + +++K
Sbjct: 119 GEPIWEPAQVPFTANKFEKNYILRTDLQ------TVLCGVVSMGNPHCVL----QVEDIK 168
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+N E+GP E+H FP R N F+++++ + +K+RV+ERGAG T ACG+GAC V
Sbjct: 169 TAPVN--ELGPLLENHERFPERANIGFMQVVNRNHIKLRVFERGAGETQACGSGACGAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G + VDLPGG L IEW+ + +YMTG A ++ G + L
Sbjct: 227 VGIMQGLLDSNVQVDLPGGSLQIEWEGVGHPLYMTGDATHIYDGFIKL 274
>gi|339441169|ref|YP_004707174.1| diaminopimelate epimerase [Clostridium sp. SY8519]
gi|338900570|dbj|BAK46072.1| diaminopimelate epimerase [Clostridium sp. SY8519]
Length = 280
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 174/291 (59%), Gaps = 18/291 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT-PEQAAK-LCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG GND++ V N E + P +K + DR+FGIG+DG+I P + D+
Sbjct: 1 MKFTKMHGCGNDYVYV---NCFEEHLEDPNGVSKYVSDRHFGIGSDGLICIHPS-DQADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-QDDGKVK- 194
M ++N+DGSE MCGNG+RC A+++ + + + ++ T AG+ ++ DGKV+
Sbjct: 57 RMAMYNADGSEGAMCGNGIRCVAKYVYD-HGMTDQTKISIETKAGIKYLDLFTKDGKVEQ 115
Query: 195 --VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
VDMG PI + S++P ++ A D+ ++ + + G ++++T VSMGNPH V F
Sbjct: 116 VTVDMGAPITRPSEIP-AVPAENDEIILDEPILIAGEEYHMTAVSMGNPHTVVFVAD--- 171
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
+++ +IGP FE+H FP R NTEF+ +I + MRVWERG+G TLACGTG CA
Sbjct: 172 ---TKAVDIEKIGPLFENHVRFPDRVNTEFIHVIDRHAIDMRVWERGSGETLACGTGTCA 228
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V A +L G+ + V + GG L I + E + ++MTGPA VF G + L
Sbjct: 229 AVYACILNGYTDDEVLVHVIGGDLRIRYDREKHTIFMTGPAVTVFEGEIEL 279
>gi|333897231|ref|YP_004471105.1| diaminopimelate epimerase [Thermoanaerobacterium xylanolyticum
LX-11]
gi|333112496|gb|AEF17433.1| Diaminopimelate epimerase [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 277
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 119/288 (41%), Positives = 168/288 (58%), Gaps = 19/288 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYT 137
+ F K GLGNDFI+++N + E A KLCDR+FGIG DG++ P G+ D
Sbjct: 1 MKFTKMTGLGNDFIVLENLENKELEYDV-LARKLCDRHFGIGGDGLLIVEPSGI--ADIK 57
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDDG--KV 193
MRI NSDGSE EMCGNG RCFA+++ E + K +V T +G+++PE+ ++D KV
Sbjct: 58 MRIINSDGSEAEMCGNGARCFAKYVYE-NGIVSKGKMSVETLSGIVMPELIFENDNVDKV 116
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
+V MG PI + +P N+ ++ + +DG + VT + +G PH V F +N
Sbjct: 117 RVYMGNPIFRPDLIPVKTDKNQ---FIEETIKIDGRAYTVTSLLIGVPHTVIFVDSIDEN 173
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ V+ +GP E +FP TN +FV++ + + +R WERGAG TLACGTGACA
Sbjct: 174 MIVN------VGPLIEKLHIFPRGTNVDFVKVEDKNNITVRTWERGAGLTLACGTGACAS 227
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA+ L +R V G L IEW DN++Y+TG AE VF G +
Sbjct: 228 AVASALTDRTKRDVYVHFKRGDLYIEWT-SDNNIYLTGKAEKVFTGDI 274
>gi|53717852|ref|YP_106838.1| diaminopimelate epimerase [Burkholderia pseudomallei K96243]
gi|167813715|ref|ZP_02445395.1| diaminopimelate epimerase [Burkholderia pseudomallei 91]
gi|217424960|ref|ZP_03456456.1| diaminopimelate epimerase [Burkholderia pseudomallei 576]
gi|418558169|ref|ZP_13122735.1| Diaminopimelate epimerase [Burkholderia pseudomallei 354e]
gi|81608156|sp|Q63YH7.1|DAPF_BURPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|52208266|emb|CAH34197.1| diaminopimelate epimerase [Burkholderia pseudomallei K96243]
gi|217391980|gb|EEC32006.1| diaminopimelate epimerase [Burkholderia pseudomallei 576]
gi|385363157|gb|EIF68937.1| Diaminopimelate epimerase [Burkholderia pseudomallei 354e]
Length = 289
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 162/293 (55%), Gaps = 16/293 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D P +T Q L DR+FGIGAD ++ P V+G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L GK S V G+I +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTGKASVRVEVKHGVITLTMQDNGEVVVDM 121
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTF-GTKEGQN 253
G P+ + + VP + L ++ + L V+GV ++ VSMGNPH V E
Sbjct: 122 GAPVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVDDAEAFA 181
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
++VD GP E FP R N F++I+S ++ +RV+ERGAG TLACGTGACA
Sbjct: 182 VRVD-------GPAIECDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAA 234
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWK---EEDNHVYMTGPAEVVFYGSVLL 363
V A + G + TV GG L I W +E + M GPA VF G + L
Sbjct: 235 VAAGIRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIEL 287
>gi|372276831|ref|ZP_09512867.1| diaminopimelate epimerase [Pantoea sp. SL1_M5]
gi|390436577|ref|ZP_10225115.1| diaminopimelate epimerase [Pantoea agglomerans IG1]
Length = 274
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 166/286 (58%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ +L+ L K V T G +V + D +V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-QLKGLTNKSDIRVSTQNGRMVLTVTPDDQVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP + VP ANK +++ L V + VSMGNPHCV + +++K
Sbjct: 119 GEPNFEPQQVP--FRANKAENLYL--LRVAEQTVMLGAVSMGNPHCVI----QVESVKTA 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++ L +GP E H FP R N F+EII+P +++RV+ERGAG T ACG+GACA V
Sbjct: 171 QVEL--LGPILESHERFPDRVNVGFMEIINPEHIRLRVYERGAGETQACGSGACAAVACG 228
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G + VDLPGG L I WK +YMTGPA V+ G + L
Sbjct: 229 IQQGILAPKVRVDLPGGTLHITWKGAGQPLYMTGPATHVYDGFIHL 274
>gi|145634839|ref|ZP_01790547.1| diaminopimelate epimerase [Haemophilus influenzae PittAA]
gi|145268005|gb|EDK08001.1| diaminopimelate epimerase [Haemophilus influenzae PittAA]
Length = 274
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 170/291 (58%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
+ F K HGLGNDF++VD + TPE +L +R+ GIG D + I P D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDIAVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV ++
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCV---------VQ 163
Query: 256 VDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + +A ++GP E+H FP R N F++II+ +K+RV+ERGAG T ACG+GACA
Sbjct: 164 VDDIQIANVEQLGPLLENHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G VDL GG L IEW + +YMTG A ++ G + L
Sbjct: 224 AVAVGIMQGLLNNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274
>gi|91774552|ref|YP_544308.1| diaminopimelate epimerase [Methylobacillus flagellatus KT]
gi|91708539|gb|ABE48467.1| diaminopimelate epimerase [Methylobacillus flagellatus KT]
Length = 290
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 160/284 (56%), Gaps = 13/284 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K G+GNDFI+VD S + + +L DR+FGIG D ++ P V G D+
Sbjct: 15 LSFTKMQGIGNDFIVVDG-YSRPVSLDADTIRRLADRHFGIGFDQLLLVERPTVEGVDFR 73
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DG E E CGNG RCF R++ + ++L K+ V T G+I+P ++D+G V V+M
Sbjct: 74 YRIFNADGGEVEQCGNGARCFVRYVHD-KSLTSKREIRVQTARGIILPRLEDNGLVTVNM 132
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP + ++VP D+ + L V ++ SMGNPH VT VD
Sbjct: 133 GEPRFEPAEVPFI----ADREAMTYLLQVADQALEISVASMGNPHAVTVVED------VD 182
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ +GP E H FP R N F++I+ +++RV+ERG+G TLACGTGACA V +
Sbjct: 183 TAPVERLGPLVERHERFPQRVNAGFMQIVDEHHIRLRVFERGSGETLACGTGACAAVASG 242
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+ G + V GG L I W+ V+MTGPAE VF GS+
Sbjct: 243 IRRGLLQSPVRVATRGGELIIAWEGGGQPVWMTGPAETVFEGSI 286
>gi|308188854|ref|YP_003932985.1| diaminopimelate epimerase [Pantoea vagans C9-1]
gi|308059364|gb|ADO11536.1| Diaminopimelate epimerase [Pantoea vagans C9-1]
Length = 282
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 165/286 (57%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 9 MQFSKMHGLGNDFMVVDAV-TQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFH 67
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ +L+ L K V T G +V + D V+V+M
Sbjct: 68 YRIFNADGSEVAQCGNGARCFARFV-QLKGLTNKSDIRVSTQNGRMVLTVTPDDHVRVNM 126
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP + VP ANK +++ L V + VSMGNPHCV + +++K
Sbjct: 127 GEPNFEPQQVP--FRANKAENLYL--LRVAEQTVMLGAVSMGNPHCVI----QVESVKTA 178
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++ L +GP E H FP R N F+EII+P +++RV+ERGAG T ACG+GACA V
Sbjct: 179 QVEL--LGPILESHERFPDRVNVGFMEIINPEHIRLRVYERGAGETQACGSGACAAVACG 236
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G + VDLPGG L I WK +YMTGPA V+ G + L
Sbjct: 237 IQQGVLAPKVRVDLPGGTLHISWKGAGQPLYMTGPATHVYDGFIHL 282
>gi|30249581|ref|NP_841651.1| diaminopimelate epimerase [Nitrosomonas europaea ATCC 19718]
gi|81584626|sp|Q82U84.1|DAPF_NITEU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|30138944|emb|CAD85523.1| Diaminopimelate epimerase [Nitrosomonas europaea ATCC 19718]
Length = 275
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 168/289 (58%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
L F K HGLGNDFI++D N + + P + DR+FGIG D + + PG +G D+
Sbjct: 3 LKFTKMHGLGNDFIVIDAINQS-VSLDPATIRRWADRHFGIGFDQLLVVEKPGESG-DFR 60
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DG E E CGNG RCFARF+ + +L K + V T G+I+P ++++G+V VDM
Sbjct: 61 YRIFNADGGEVEQCGNGARCFARFVRD-HDLTRKNTIRVETACGIIMPTVEENGEVSVDM 119
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P + +P + + L+V+ + ++ VSMGNPH V V
Sbjct: 120 GIPRFDPARIPFITQ----ERALTYPLNVNDREIEISAVSMGNPHAVQI---------VP 166
Query: 258 KLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
++LA + GP E H FP + N +++I+ + +++RV+ERG G TLACGTGACA V
Sbjct: 167 DIDLAPVTSEGPAIESHPFFPEKVNAGYMQIVDRTHIRLRVFERGTGETLACGTGACAAV 226
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V+ + G + V + GG L I W+ ED V+MTGPA VF G++ L
Sbjct: 227 VSGISRGLLDSEVQVTMRGGNLRIRWEGEDQPVWMTGPAVSVFEGTIDL 275
>gi|291541479|emb|CBL14589.1| carbamoyl-phosphate synthase large subunit [Ruminococcus bromii
L2-63]
Length = 1350
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 178/299 (59%), Gaps = 25/299 (8%)
Query: 73 RRESGFLHFVKYHGLGNDFILVDNRNSTEPRIT-PEQ-AAKLCDRNFGIGADGVIFAMPG 130
R E L F K G+GND+I ++ + I+ PE A +L DR+FGIG DG+I P
Sbjct: 1065 REEKLMLKFTKMQGIGNDYIYC---STFDQEISNPEALAVRLSDRHFGIGGDGIILVCPS 1121
Query: 131 VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE--LENLNGKQSFTVHTGAGLIVPEIQ 188
D M+++N DGSE +MCGNG+RC +F+ + + ++N K T+ T +G+ +
Sbjct: 1122 -KVADAKMKMYNLDGSEGKMCGNGIRCVGKFLYDHGMVDINEKDEITIETLSGIKKLKAY 1180
Query: 189 DDG----KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCV 244
G +++VDMG+ IL ++P +L +K VV +++ G +N+TCVSMGNPHCV
Sbjct: 1181 TSGGKVNRLRVDMGKAILDPKEIPVALDGDK---VVDRTVEIAGKNYNITCVSMGNPHCV 1237
Query: 245 TFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATL 304
F +D L++ IGP+FE+ +FP R NTEFV ++ +KMRVWERG+G T
Sbjct: 1238 VFMDD------IDNLDIETIGPEFENDKLFPERVNTEFVTVLDDHTIKMRVWERGSGETW 1291
Query: 305 ACGTGACAVVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
ACGTGACAV VAA G ++ + L GG L I + +E VYMTG AE VF G V
Sbjct: 1292 ACGTGACAVAVAACENGFCKKGEDIKIKLKGGDLIINYTDE--TVYMTGNAEKVFEGEV 1348
>gi|78484750|ref|YP_390675.1| diaminopimelate epimerase [Thiomicrospira crunogena XCL-2]
gi|78363036|gb|ABB41001.1| diaminopimelate epimerase [Thiomicrospira crunogena XCL-2]
Length = 283
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 164/291 (56%), Gaps = 20/291 (6%)
Query: 76 SGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNG-T 134
+ L F K GLGNDF+++D T ++ E+ +R FG+G D ++ G
Sbjct: 2 TNLLKFSKMQGLGNDFMVIDGTQET-ITLSTEEIRFWANRYFGVGFDQLLMVENSAQGDV 60
Query: 135 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVK 194
D+ RIFN+DGSE + CGNG RCFA+F+ + + L K V T +G+IV I D G V+
Sbjct: 61 DFRYRIFNADGSEVQQCGNGARCFAKFVYD-KGLTDKTEIRVETASGMIVLYITDQGWVR 119
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
V+MG P +P + +Q ELDVDG ++ + VSMGNPH V L
Sbjct: 120 VNMGAPNFLPEALPFDMPLESEQY----ELDVDGERFEIGAVSMGNPHAV---------L 166
Query: 255 KVDKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+V L +AE+G K E H +FP R N F E + +K+RV+ERGA TLACGTGAC
Sbjct: 167 RVADLGAAPVAEVGEKIESHRLFPERVNVGFAETLDRQHIKLRVYERGAAETLACGTGAC 226
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWK-EEDNHVYMTGPAEVVFYGSV 361
A +V G + TV LPGG L+IEW ++ + V+MTGPA VF G +
Sbjct: 227 AAMVVLRNLGEVDDVVTVSLPGGDLEIEWNGDKSSPVWMTGPAVHVFEGEI 277
>gi|344338616|ref|ZP_08769547.1| Diaminopimelate epimerase [Thiocapsa marina 5811]
gi|343801198|gb|EGV19141.1| Diaminopimelate epimerase [Thiocapsa marina 5811]
Length = 276
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 122/288 (42%), Positives = 160/288 (55%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAAKLCDRNFGIGADGVIFAMP-GVNGTD 135
L F K GLGNDF+++D +TE I P A +L DR FGIG D ++ P + GT+
Sbjct: 3 LAFSKMQGLGNDFVVLD---ATERPIALDPALARRLADRRFGIGCDQILLVEPPRLPGTE 59
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ RIFN+DGSE E CGNG RCFARF+ + L V T AG I ++D+G+V+V
Sbjct: 60 FHYRIFNADGSEVEQCGNGARCFARFVRD-RGLTEHDEIPVGTAAGPIRLYLEDEGQVRV 118
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
DMG P + +P D+ + ++DV G + VSMGNPH V
Sbjct: 119 DMGAPEFEPERIPFL----ADRQALDYDMDVAGESVLIGAVSMGNPHAVILVDD------ 168
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+D +A +GP E H FP R N F++I++ L++RV+ERGAG TLACGTGACA +
Sbjct: 169 LDSAPVARLGPLVESHPRFPQRVNVGFMQILARDHLRLRVYERGAGETLACGTGACAAMA 228
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A R V LPGG L I W V+MTGPA VF G + L
Sbjct: 229 YARRCDRVGARVRVSLPGGDLMIAWNAPGESVWMTGPAVQVFEGEIAL 276
>gi|378696950|ref|YP_005178908.1| diaminopimelate epimerase [Haemophilus influenzae 10810]
gi|301169469|emb|CBW29069.1| diaminopimelate epimerase [Haemophilus influenzae 10810]
Length = 274
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 166/288 (57%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
+ F K HGLGNDF++VD + TPE +L +R+ GIG D + I P D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K +V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKNDISVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E H FP R N F++II+ +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G VDL GG L IEW + +YMTG A ++ G + L
Sbjct: 227 VGIMQGLLNNNVQVDLLGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274
>gi|254251136|ref|ZP_04944454.1| Diaminopimelate epimerase [Burkholderia dolosa AUO158]
gi|124893745|gb|EAY67625.1| Diaminopimelate epimerase [Burkholderia dolosa AUO158]
Length = 311
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 162/293 (55%), Gaps = 14/293 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
L F K HG GNDF+++D + P +T Q L +R+FGIGAD + + P V+G D+
Sbjct: 25 LSFTKMHGAGNDFVVLDGYSRALPPLTQAQVRALANRHFGIGADQLLVVEKPTVDGADFK 84
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+++ L K+S V GLI +QD+G+V VDM
Sbjct: 85 YRIFNCDGGEVEHCGNGARCFVKFVSD-RGLTDKRSVRVQVMKGLITLTMQDNGEVVVDM 143
Query: 198 GEPILKASDV---PTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + + V + L + LDV G ++ VSMGNPH V
Sbjct: 144 GAPVFEPAQVLFDASGLEGRPEGRDTLWPLDVGGATRWISTVSMGNPHAVQVVDDAEAYP 203
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+D+ GP E H+ FP R N F++I+S ++K+RV+ER AG TLACGTGACA V
Sbjct: 204 VLDE------GPLIERHARFPQRVNAGFMQIVSRHEVKLRVYERSAGETLACGTGACAAV 257
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLLN 364
A + G + V GG L I W ++E + M GPAE VF G + LN
Sbjct: 258 AAGIRRGLLDSPVAVHTHGGTLTIGWDGARDETAALTMAGPAETVFEGEIDLN 310
>gi|71905834|ref|YP_283421.1| diaminopimelate epimerase [Dechloromonas aromatica RCB]
gi|123628370|sp|Q47JN0.1|DAPF_DECAR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|71845455|gb|AAZ44951.1| diaminopimelate epimerase [Dechloromonas aromatica RCB]
Length = 276
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 122/287 (42%), Positives = 158/287 (55%), Gaps = 15/287 (5%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D R S ++PEQ L DR+FG+G D ++ G D+
Sbjct: 3 LKFSKMHGLGNDFVVLDGVRQSVS--LSPEQLCYLADRHFGVGCDQILLVEKASQPGIDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E E CGNG RCF RF+ + E L K+ V T G+I P ++ DG V VD
Sbjct: 61 RYRIFNADGGEVEQCGNGARCFVRFVHD-EGLTDKREIRVETMRGIISPRLEGDGNVTVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P +++P A D V+ LDV + VSMGNPH V V
Sbjct: 120 MGIPRFLPAEIP--FLAEDD--VIIHLLDVADETLETSVVSMGNPHAVQVVDS------V 169
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
D + E GP E H FP R N F++I+ +K+RV+ERG+G T+ACGTGACA VVA
Sbjct: 170 DTAPVGEHGPLIEKHPRFPLRVNAGFMQIVDRHAIKLRVYERGSGETMACGTGACAAVVA 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ G + V GG L I W ++ V MTGPA VF G + L
Sbjct: 230 GIRRGLLDSPVRVTTRGGDLTIAWGGDERPVLMTGPAVTVFTGEIEL 276
>gi|381403541|ref|ZP_09928225.1| diaminopimelate epimerase [Pantoea sp. Sc1]
gi|380736740|gb|EIB97803.1| diaminopimelate epimerase [Pantoea sp. Sc1]
Length = 274
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 120/286 (41%), Positives = 166/286 (58%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ +L+ L K V T G +V + D +V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-QLKGLTNKSDIRVSTQNGRMVLTVTPDDQVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP + VP ANK +++ L V + VSMGNPHCV + +++K
Sbjct: 119 GEPNFEPQQVP--FRANKAENLYL--LRVAEQTVMLGAVSMGNPHCVI----QVESVKTA 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++ L +GP E H FP R N F+EI++P +++RV+ERGAG T ACG+GACA V
Sbjct: 171 QVEL--LGPILESHERFPERVNVGFMEIVNPEHIRLRVYERGAGETQACGSGACAAVACG 228
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G + VDLPGG L I WK +YMTGPA V+ G + L
Sbjct: 229 IQQGILAPKVRVDLPGGTLHITWKGAGQPLYMTGPATHVYDGFIHL 274
>gi|398799815|ref|ZP_10559096.1| diaminopimelate epimerase [Pantoea sp. GM01]
gi|398097360|gb|EJL87669.1| diaminopimelate epimerase [Pantoea sp. GM01]
Length = 274
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 161/286 (56%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DRN GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPELIRRLADRNLGIGFDQLLIVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKNDIRVSTQTGRMVLSVTNDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G+P + VP L ANK +++ + V + VSMGNPHCV Q V
Sbjct: 119 GQPNFEPQSVP--LRANKAENLYLQRVAEQTVMFG--AVSMGNPHCVI------QVESVK 168
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ +GP+ E H FP R N F+E+++ +++RV+ERGAG T ACG+GACA V
Sbjct: 169 TAPVETLGPELESHERFPERVNVGFMEVVNREHIRLRVYERGAGETQACGSGACAAVACG 228
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +G VDLPGG L I WK E ++MTGPA V+ G + L
Sbjct: 229 VQQGILAENVRVDLPGGTLHIAWKGEGQPLFMTGPATHVYDGFIHL 274
>gi|393787615|ref|ZP_10375747.1| diaminopimelate epimerase [Bacteroides nordii CL02T12C05]
gi|392658850|gb|EIY52480.1| diaminopimelate epimerase [Bacteroides nordii CL02T12C05]
Length = 269
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 170/292 (58%), Gaps = 40/292 (13%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAA-KLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K HG GND+I VD + P PE+ A + + GIG+DG++ + + D++
Sbjct: 5 IQFTKMHGAGNDYIYVDT--TRYPVTNPEKKAIEWSAYHTGIGSDGLVL-IGTSDKADFS 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK----V 193
MRIFN+DGSE MCGN RC +++ E L G+ T+ T +G+ + ++ + + V
Sbjct: 62 MRIFNADGSEAMMCGNASRCIGKYLFEY-GLTGRTVITLDTLSGIKILKLNVENETVTAV 120
Query: 194 KVDMGEP----ILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTK 249
VDMGEP I+ SD + +S T VSMGNPH VTF
Sbjct: 121 TVDMGEPSETGIIDFSDTYSYVS---------------------TKVSMGNPHLVTFVED 159
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
++ +NL +IGP+ E++ +FP RTN EF +++ +++MRVWERG+G T ACGTG
Sbjct: 160 ------INGINLQKIGPELENNPLFPDRTNVEFAQVLDDHKIRMRVWERGSGITQACGTG 213
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
ACA VAAV+ G A R+ + + GG L IEW E+ NHV+MTGPA VF G++
Sbjct: 214 ACATAVAAVIRGKAGRKSAIIMDGGTLTIEWDEKTNHVFMTGPATKVFDGTI 265
>gi|398853475|ref|ZP_10610076.1| diaminopimelate epimerase [Pseudomonas sp. GM80]
gi|398239710|gb|EJN25415.1| diaminopimelate epimerase [Pseudomonas sp. GM80]
Length = 276
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 171/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I ++++DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKGGIIELDVRNDGQIGVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P A + +L+VDG + VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFEAPAQ----AISYQLEVDGTTVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I ++ ++RVWERGAG T ACGTGACA
Sbjct: 167 QDINSAPVHELGPKIEHHPRFPARVNVGFLQVIDRNRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVLMTGPAVRVYEGQVRL 276
>gi|398881565|ref|ZP_10636554.1| diaminopimelate epimerase [Pseudomonas sp. GM60]
gi|398201204|gb|EJM88091.1| diaminopimelate epimerase [Pseudomonas sp. GM60]
Length = 276
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 133/290 (45%), Positives = 169/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKSGIIELDIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P D LDVDG + VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFV----ADSQAPSYSLDVDGTTVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I ++ ++RVWERGAG T ACGTGACA
Sbjct: 167 IDINNAPVHELGPKIEHHPRFPARVNVGFLQVIDRNRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVLMTGPAVRVYEGQVRL 276
>gi|339627420|ref|YP_004719063.1| diaminopimelate epimerase [Sulfobacillus acidophilus TPY]
gi|379008204|ref|YP_005257655.1| diaminopimelate epimerase [Sulfobacillus acidophilus DSM 10332]
gi|339285209|gb|AEJ39320.1| Diaminopimelate epimerase [Sulfobacillus acidophilus TPY]
gi|361054466|gb|AEW05983.1| diaminopimelate epimerase [Sulfobacillus acidophilus DSM 10332]
Length = 288
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 115/287 (40%), Positives = 164/287 (57%), Gaps = 17/287 (5%)
Query: 80 HFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMR 139
HF K HGLGND++ D R A + DR+FG+GADG+I P + MR
Sbjct: 6 HFTKLHGLGNDYLYFDAREGGPWPDWSAFARAISDRHFGVGADGIIVIEPSTT-AEVRMR 64
Query: 140 IFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-QDDG----KVK 194
IFN+DGSE EMCGNG+R A+++ + +Q + TGAGL+ PEI + +G +++
Sbjct: 65 IFNADGSESEMCGNGLRALAKWLYDRGWAGTRQ--LIETGAGLLEPEIVETEGGKATRIR 122
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
V+MG P + D+ + + D + + VDG ++++TC SMGNPH + FG
Sbjct: 123 VNMGPPRFRRRDI--GMLGDPDAEALDEAVTVDGRRFSLTCASMGNPHAMIFGPM----- 175
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+D+ LA G + E +FP R N VE++ P ++MR WERGAG TLACGTG A +
Sbjct: 176 -MDEATLAHYGSRIETDPLFPRRVNVHSVEVLDPGHIRMRHWERGAGLTLACGTGVAATL 234
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNH-VYMTGPAEVVFYGS 360
AA G R V++PGG L+ EW+ +Y+TGPA VF G+
Sbjct: 235 AAAHYTGRTGPRVEVEVPGGILEAEWENPPTGPIYLTGPAVEVFSGT 281
>gi|187927149|ref|YP_001897636.1| diaminopimelate epimerase [Ralstonia pickettii 12J]
gi|309780149|ref|ZP_07674900.1| diaminopimelate epimerase [Ralstonia sp. 5_7_47FAA]
gi|404394745|ref|ZP_10986548.1| diaminopimelate epimerase [Ralstonia sp. 5_2_56FAA]
gi|229813252|sp|B2UD25.1|DAPF_RALPJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|187724039|gb|ACD25204.1| Diaminopimelate epimerase [Ralstonia pickettii 12J]
gi|308920852|gb|EFP66498.1| diaminopimelate epimerase [Ralstonia sp. 5_7_47FAA]
gi|348613810|gb|EGY63379.1| diaminopimelate epimerase [Ralstonia sp. 5_2_56FAA]
Length = 292
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 159/290 (54%), Gaps = 12/290 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
LHF K HG GNDF+++D T TPEQ A + DR+FG+GAD ++ D+
Sbjct: 3 LHFTKMHGAGNDFVVLDGIQ-TPIDFTPEQWAAIADRHFGVGADQLLLVERSTRPDVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L K++ V G+ +QDDG+V VDM
Sbjct: 62 YRIFNHDGGEVEHCGNGARCFVKFVTD-RGLTDKRTVRVEVMNGIATLTMQDDGQVTVDM 120
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ +A+ +P L + L ++G ++ VSMGNPH V
Sbjct: 121 GAPVFEAARLPFLPEGLPTRTQGDDTQHALQINGRTEWLSTVSMGNPHAVQIVDD----- 175
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ + E GP E H+VFP R N F++I+ +++RV+ERGAG TLACGTGACA V
Sbjct: 176 -TEAFPVLEDGPLIESHAVFPRRVNAGFMQIVDRHSVRLRVYERGAGETLACGTGACAAV 234
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VA + G + V GG L I W + V MTGPA VF G++ L+
Sbjct: 235 VAGIRRGLLDSPVKVATHGGDLTIAWAGDGQPVMMTGPATTVFEGTLDLD 284
>gi|229844619|ref|ZP_04464758.1| diaminopimelate epimerase [Haemophilus influenzae 6P18H1]
gi|229812333|gb|EEP48023.1| diaminopimelate epimerase [Haemophilus influenzae 6P18H1]
Length = 274
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 167/288 (57%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
+ F K HGLGNDF++VD + TPE +L +R+ GIG D + I P D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ +V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E H FP R N F++II+ +K+RV+ERGAG T ACG+GA A V
Sbjct: 167 IQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGAGAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G VDLPGG L IEW + +YMTG A ++ G + L
Sbjct: 227 VGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274
>gi|254295753|ref|ZP_04963210.1| diaminopimelate epimerase [Burkholderia pseudomallei 406e]
gi|157806090|gb|EDO83260.1| diaminopimelate epimerase [Burkholderia pseudomallei 406e]
Length = 289
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 161/293 (54%), Gaps = 16/293 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D P +T Q L DR+FGIGAD ++ P V+G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L GK S V +I +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTGKASVRVEVKHSVITLTMQDNGEVVVDM 121
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTF-GTKEGQN 253
G P+ + + VP + L ++ + L V+GV ++ VSMGNPH V E
Sbjct: 122 GAPVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVDDAEAFA 181
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
++VD GP E FP R N F++I+S ++ +RV+ERGAG TLACGTGACA
Sbjct: 182 VRVD-------GPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAA 234
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWK---EEDNHVYMTGPAEVVFYGSVLL 363
V A + G + TV GG L I W +E + M GPA VF G + L
Sbjct: 235 VAAGIRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIEL 287
>gi|444347173|ref|ZP_21155120.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype c str. AAS4A]
gi|443540831|gb|ELT51351.1| diaminopimelate epimerase [Aggregatibacter actinomycetemcomitans
serotype c str. AAS4A]
Length = 269
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 114/284 (40%), Positives = 168/284 (59%), Gaps = 21/284 (7%)
Query: 85 HGLGNDFILVD--NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIF 141
HGLGNDF++VD +N P E +L DR+ G+G D ++ P + D+ RIF
Sbjct: 2 HGLGNDFMVVDAVTQNIYFP---TETIKRLADRHRGVGFDQLLVVEPPYDPELDFHYRIF 58
Query: 142 NSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 201
N+DGSE CGNG RCFARF+ L+ L K+ V T G ++ +++DG V+V+MGEPI
Sbjct: 59 NADGSEVAQCGNGARCFARFVT-LKGLTNKKDIAVSTQNGKMLLTVKEDGNVRVNMGEPI 117
Query: 202 LKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLKVDKL 259
+ + +P + + + ++++E+ V C VSMGNPHCV Q +
Sbjct: 118 WEPNKIPFTANKFEKNYILRTEIQT------VLCSAVSMGNPHCVV------QVEDIQTA 165
Query: 260 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVL 319
N+ ++GP E+H FP R N F+++++ +K+RV+ERG G T ACG+GACA V ++
Sbjct: 166 NVEQLGPLLENHERFPERVNAGFMQVVNRHHIKLRVYERGTGETQACGSGACAAVAVGIM 225
Query: 320 EGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+G + VDLPGG L IEW+ E + +YMTG A V+ G V L
Sbjct: 226 QGVLDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVVCL 269
>gi|410694376|ref|YP_003624998.1| Diaminopimelate epimerase (DAP epimerase) [Thiomonas sp. 3As]
gi|294340801|emb|CAZ89196.1| Diaminopimelate epimerase (DAP epimerase) [Thiomonas sp. 3As]
Length = 287
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 121/291 (41%), Positives = 160/291 (54%), Gaps = 20/291 (6%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIF--AMPGVNGTDYTM 138
F K HG GNDF+++D + ++ Q L DR+FG+GAD ++ A P D+
Sbjct: 5 FTKMHGAGNDFVVLDATRAPLA-LSAAQLRLLADRHFGVGADQILLVEAAPSPE-VDFGY 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RIFN+DG E E CGNG RCF ++ + L K+ V T +GLI PE+Q DG+V VDMG
Sbjct: 63 RIFNADGGEVEQCGNGARCFVAYV-HGKGLTAKRRIRVQTLSGLIEPELQPDGRVTVDMG 121
Query: 199 EPILKASDVPTSLSANKDQSVVKSE---LDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
P+ VP + + V E LD+ G V+ +SMGNPH V +
Sbjct: 122 APVFDLPRVPFEAHGLRPRQVDGWEQWPLDLVGATAWVSVLSMGNPHAVQ---------R 172
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD ++ A + GP EHH FP R N F++I+ +++RVWERGAG TLACGTGACA
Sbjct: 173 VDDVDTAPVLSHGPLIEHHPRFPRRVNAGFMQIVDAQHIRLRVWERGAGETLACGTGACA 232
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VVA + G + V GG L I W V MTGPA VF G++ L
Sbjct: 233 AVVAGLRHGWLQGAVDVQTHGGELTISWAGAGQPVRMTGPAAFVFDGTIDL 283
>gi|398793339|ref|ZP_10553757.1| diaminopimelate epimerase [Pantoea sp. YR343]
gi|398210951|gb|EJM97580.1| diaminopimelate epimerase [Pantoea sp. YR343]
Length = 274
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 161/286 (56%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DRN GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPELIRRLADRNLGIGFDQLLIVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKSDIRVSTQTGRMVLSVTNDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G+P + VP L ANK +++ + V + VSMGNPHCV Q V
Sbjct: 119 GQPNFEPQSVP--LRANKAENLYLQRVADQTVMFG--AVSMGNPHCVI------QVESVK 168
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ +GP+ E H FP R N F+E+++ +++RV+ERGAG T ACG+GACA V
Sbjct: 169 TAPVETLGPELESHERFPERVNVGFMEVVNREHIRLRVYERGAGETQACGSGACAAVACG 228
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +G VDLPGG L I WK E ++MTGPA V+ G + L
Sbjct: 229 VQQGILAENVRVDLPGGTLHIAWKGEGQPLFMTGPATHVYDGFIHL 274
>gi|336316579|ref|ZP_08571473.1| diaminopimelate epimerase [Rheinheimera sp. A13L]
gi|335879126|gb|EGM77031.1| diaminopimelate epimerase [Rheinheimera sp. A13L]
Length = 289
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 168/299 (56%), Gaps = 19/299 (6%)
Query: 69 SFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAM 128
F DR +HF K HGLGNDF+++D S +T EQ KL DRNFG+G D ++
Sbjct: 6 KFKDRPHQSLVHFSKMHGLGNDFMVIDAV-SQNVFLTKEQIKKLADRNFGVGFDQLLMVE 64
Query: 129 PGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI 187
P + D+ RIFN+DGSE E CGNG RCFA+F+ + L K V T +G I I
Sbjct: 65 PPYDPDLDFHYRIFNADGSEVEQCGNGARCFAKFVRH-KGLTNKYKIAVSTKSGKITLYI 123
Query: 188 QDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFG 247
+ DG+V V+MG P + VP + ++ SE D + VSMGNPH V
Sbjct: 124 EQDGQVTVNMGVPQFDPAKVPFKAQKQELNYILHSE-DATTL---CGVVSMGNPHAVIL- 178
Query: 248 TKEGQNLKVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATL 304
VD + A + GP FE+H FP R N F++++SPS +K+RVWERGAG T+
Sbjct: 179 --------VDDIQTAPVHQWGPVFENHERFPERANIGFMQVLSPSHVKLRVWERGAGETM 230
Query: 305 ACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
ACGTGACA V ++ + + VDLPGG L I W+ V MTGPAE VF G + L
Sbjct: 231 ACGTGACAAAVIGQMQKKLQTQVRVDLPGGSLQIRWQGPGQPVKMTGPAEHVFDGQLFL 289
>gi|386743709|ref|YP_006216888.1| diaminopimelate epimerase [Providencia stuartii MRSN 2154]
gi|384480402|gb|AFH94197.1| diaminopimelate epimerase [Providencia stuartii MRSN 2154]
Length = 274
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 165/291 (56%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
+ F K HGLGNDF++VD + +PE ++L DR+ G+G D ++ P D+
Sbjct: 1 MQFSKMHGLGNDFMVVDGV-TQNVYFSPELISRLADRHTGVGFDQLLLVEAPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T +G +V I ++ V V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKQKIKVSTQSGRMVLTINENDDVCVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + VP + ++++ ++ V C VSMGNPHCV ++
Sbjct: 119 GEPEFEPQKVPFRAIKAEKTYIIRA------LERTVLCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ + AE+ GP E H FP RTN F+EI+S +++RV+ERGAG T ACG+GACA
Sbjct: 164 VESVKTAEVEILGPVLESHERFPERTNVGFMEIVSAHHIRLRVFERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G + VDLPGG LDI W +YMTGPA V+ G + L
Sbjct: 224 AVAIGIQQGLLANQVKVDLPGGSLDISWNGPGTPLYMTGPASHVYDGVIQL 274
>gi|269103728|ref|ZP_06156425.1| diaminopimelate epimerase [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268163626|gb|EEZ42122.1| diaminopimelate epimerase [Photobacterium damselae subsp. damselae
CIP 102761]
gi|358410703|gb|AEU10089.1| diaminopimelate epimerase [Photobacterium damselae subsp.
piscicida]
Length = 276
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 170/291 (58%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
++F K HGLGNDF++VD + +P+ +L DR+ GIG D ++ P + TD+
Sbjct: 3 INFSKMHGLGNDFMVVDAV-TQNVFFSPDMVRRLADRHRGIGFDQLLIVEPPYDPETDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE E CGNG RCFARF++ ++ L K +V T AG ++ ++++D +V V+M
Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVS-MKGLTNKYHISVSTKAGKMLLKLENDDQVTVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
G PI + +P + + ++++ V C SMGNPHCVT
Sbjct: 121 GVPIFDPAKIPFRANQAEKTYILRAG------DQTVFCGAASMGNPHCVTV--------- 165
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A++ GP E H FP R N F+++IS S++K+RV+ERGAG T ACG+GACA
Sbjct: 166 VDDVLTADVETLGPLLESHERFPERVNVGFMQVISRSEVKLRVYERGAGETQACGSGACA 225
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +G + TV LPGG L I W ++++MTGP VF G VLL
Sbjct: 226 AVAIGRQQGLLDEEVTVSLPGGDLRIRWNGNGSNLFMTGPVAHVFDGQVLL 276
>gi|109900372|ref|YP_663627.1| diaminopimelate epimerase [Pseudoalteromonas atlantica T6c]
gi|410625928|ref|ZP_11336698.1| diaminopimelate epimerase [Glaciecola mesophila KMM 241]
gi|123170519|sp|Q15NG5.1|DAPF_PSEA6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|109702653|gb|ABG42573.1| diaminopimelate epimerase [Pseudoalteromonas atlantica T6c]
gi|410154548|dbj|GAC23467.1| diaminopimelate epimerase [Glaciecola mesophila KMM 241]
Length = 276
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 121/290 (41%), Positives = 169/290 (58%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++DN + + E+ ++L DRNFGIG D ++ P + D+
Sbjct: 3 VQFSKMHGLGNDFVVIDNV-TQNVFFSKEKISQLADRNFGIGFDQLLVVEPPYDPEQDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSE CGNG RCFARF+ +++ L + V T AG IV + DG++ V+M
Sbjct: 62 YRIFNSDGSEVSQCGNGARCFARFV-KMKGLTNRNKIVVSTKAGRIVLYHERDGQITVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSV-VKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
GEPI + + +P L ANK +++ + E D + VSMGNPHCV L V
Sbjct: 121 GEPIFEPAKIP--LKANKQENIYIIRENDH---TFFCGAVSMGNPHCV---------LLV 166
Query: 257 DKLNLAE---IGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A+ IG H FP N F++I++ +K+RV+ERG G TLACG+GACA
Sbjct: 167 DDVETADVEGIGKTLVAHERFPEGANIGFMQILNSGHIKLRVYERGVGETLACGSGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V ++ + TVDLPGG L I W+ + + MTG AE VF G++ L
Sbjct: 227 VAVGQMQKKLNKEVTVDLPGGTLKIRWQGPGSILKMTGTAEHVFDGNITL 276
>gi|152997589|ref|YP_001342424.1| diaminopimelate epimerase [Marinomonas sp. MWYL1]
gi|150838513|gb|ABR72489.1| Diaminopimelate epimerase [Marinomonas sp. MWYL1]
Length = 276
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 167/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF++VD S + +Q KL DRN+GIG D ++ P + D+
Sbjct: 2 LLKFTKMHGLGNDFVVVDAV-SRKVFFNKQQIEKLSDRNWGIGFDQLLVVEPPTDPDMDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RI+NSDGSE E CGNG RCFA+F+ + E L K+ V T G I + D G V VD
Sbjct: 61 RYRIYNSDGSEVEHCGNGARCFAKFVLDRE-LTNKRIINVETKRGAIQLRVLDGGLVTVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P + D+P + + V + + ++ +T VS+GNPH V +KV
Sbjct: 120 MGAPSFEPQDLPFT----AEPCDVLYSIMAEDTEYLITPVSVGNPHAV---------IKV 166
Query: 257 DKL---NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+L +A++G E H FP + N F+++++P ++ +RV+ERG G T ACGTGACA
Sbjct: 167 DQLIDDEVAKVGALIECHERFPRKVNVGFMQVVNPDEINLRVYERGVGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VVA + +G + T L GG L IEW+ E + + MTGPAE VF G + L
Sbjct: 227 VVAGIKQGWLSPKVTAHLRGGDLHIEWQGEGSPILMTGPAEKVFEGQIYL 276
>gi|188026351|ref|ZP_02961775.2| hypothetical protein PROSTU_03841 [Providencia stuartii ATCC 25827]
gi|188020072|gb|EDU58112.1| diaminopimelate epimerase [Providencia stuartii ATCC 25827]
Length = 278
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 165/291 (56%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
+ F K HGLGNDF++VD + +PE ++L DR+ G+G D ++ P D+
Sbjct: 5 MQFSKMHGLGNDFMVVDGV-TQNVYFSPELISRLADRHTGVGFDQLLLVEAPYDPDLDFH 63
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T +G +V I ++ V V+M
Sbjct: 64 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKQKIKVSTQSGRMVLTINENDDVCVNM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + VP + ++++ ++ V C VSMGNPHCV ++
Sbjct: 123 GEPEFEPQKVPFRAIKAEKTYIIRA------LERTVLCGVVSMGNPHCV---------IQ 167
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ + AE+ GP E H FP RTN F+EI+S +++RV+ERGAG T ACG+GACA
Sbjct: 168 VESVKTAEVEILGPVLESHERFPERTNVGFMEIVSAHHIRLRVFERGAGETQACGSGACA 227
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G + VDLPGG LDI W +YMTGPA V+ G + L
Sbjct: 228 AVAIGIQQGLLANQVKVDLPGGSLDISWNGPGTPLYMTGPASHVYDGVIQL 278
>gi|126696309|ref|YP_001091195.1| diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9301]
gi|126543352|gb|ABO17594.1| Diaminopimelate epimerase [Prochlorococcus marinus str. MIT 9301]
Length = 286
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 119/296 (40%), Positives = 175/296 (59%), Gaps = 23/296 (7%)
Query: 79 LHFVKYHGLGNDFILVDNR------NSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN 132
+ F KY G GNDF+++D+R N +I ++C+R FGIGADGVIF
Sbjct: 4 ITFEKYQGNGNDFVVIDSRGNDLYKNYKTNKIF--DIKQICNRQFGIGADGVIFIEEPKE 61
Query: 133 GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ-SFTVHTGAGLIVPEIQDDG 191
M IFNSDGSE +MCGNG+RC ++ +++N K + + T AGL + + +D
Sbjct: 62 DNYAKMIIFNSDGSEAQMCGNGIRCLVEYLHLNDSMNNKNIEYKIETKAGLKIAKYIND- 120
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSEL---DVDGVKWNVTCVSMGNPHCVTFGT 248
++ V MG PIL+ ++PT++ K S+ E D + + + V MGNPH + F
Sbjct: 121 EITVKMGVPILECQNIPTTIEK-KINSIPSHEFIEKDFNNMGY---AVGMGNPHLIFF-V 175
Query: 249 KEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
K+ ++ + L+ +GP E + +FP +TN F +I++ +K++VWERGAG TLACGT
Sbjct: 176 KD-----IESIILSRLGPILEKNELFPEKTNVHFCQILNRDNIKVKVWERGAGPTLACGT 230
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
GACA+ VAA G + V LPGG L I+W ++D V MTG A+ VF GS+L+N
Sbjct: 231 GACAIHVAAYKLGLCNSQTIVTLPGGNLKIDWSKDDCEVMMTGNAKKVFSGSMLVN 286
>gi|387896320|ref|YP_006326617.1| diaminopimelate epimerase [Pseudomonas fluorescens A506]
gi|387159929|gb|AFJ55128.1| diaminopimelate epimerase [Pseudomonas fluorescens A506]
Length = 276
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 171/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPSNPEVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I +I++DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKGGVIELDIRNDGQISVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P S + LDVDG ++ VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFQAS----EQATSYALDVDGKTVDIAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I ++ ++RVWERG G T ACGTGACA
Sbjct: 167 TDINNAPVHELGPKIEHHPRFPARANVGFLQVIDRNRAQLRVWERGVGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPASRVYEGQVRL 276
>gi|410611532|ref|ZP_11322630.1| diaminopimelate epimerase [Glaciecola psychrophila 170]
gi|410168950|dbj|GAC36519.1| diaminopimelate epimerase [Glaciecola psychrophila 170]
Length = 276
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 164/289 (56%), Gaps = 19/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++DN + + E+ +L DRNFGIG D ++ P + D+
Sbjct: 3 IQFSKMHGLGNDFVVIDNV-TQNVFFSKEKIQQLSDRNFGIGFDQLLMVEPPYDPDQDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ +++ L + V T AG +V ++ DG+V V+M
Sbjct: 62 YRIFNADGSEVSQCGNGARCFARFV-KMKGLTNRNKIVVSTKAGRMVLYLEKDGQVTVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P + S VP + +++++ + VSMGNPHCV L VD
Sbjct: 121 GVPEFEPSLVPIKAQKREKTYIIRAQEHT----FFCGAVSMGNPHCV---------LLVD 167
Query: 258 KLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ A++ GP E H F N F++II+ S +K+RV+ERGAG TLACG+GACA V
Sbjct: 168 DVETADVETMGPLLEKHERFSEGANVGFMQIINHSHIKLRVFERGAGETLACGSGACAAV 227
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
L+ + VDL GG L I W+ DN + MTG AE VF G + L
Sbjct: 228 AVGQLQNRLSKDVRVDLRGGSLKIRWQGGDNVLKMTGAAEHVFDGYINL 276
>gi|345017820|ref|YP_004820173.1| diaminopimelate epimerase [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033163|gb|AEM78889.1| Diaminopimelate epimerase [Thermoanaerobacter wiegelii Rt8.B1]
Length = 274
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 121/290 (41%), Positives = 172/290 (59%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYT 137
+ F K HGLGNDFI+++ + + E A KLCDR+FGIGADG++ P G+ D
Sbjct: 1 MKFTKMHGLGNDFIVIEALENVD---YSELAIKLCDRHFGIGADGLLVVEPSGI--ADIR 55
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-QDDGKV--- 193
MRIFN+DGSE EMCGNG RCFA+++ E + K+ V T AG+I+PE+ ++G+V
Sbjct: 56 MRIFNADGSEAEMCGNGSRCFAKYVYE-RGIVKKEKMAVETLAGVIMPEVFVENGEVESV 114
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
KV M PI +AS +P + Q + + +DG + +T + +G PH + F +N
Sbjct: 115 KVYMSNPIFEASKIPIK---SDKQKFINEPVKIDGKVYKLTSLRVGVPHTIVFVESLDEN 171
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ + E+GPK E S+FP TN +FV++ + +R WERG G TLACG+GACA
Sbjct: 172 M------IKELGPKIEKSSLFPQGTNVDFVKVEDKENISVRTWERGVGLTLACGSGACAS 225
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA+ + G ER V G L +EW EDN +Y++G E VF G + L
Sbjct: 226 AVASAVLGKTERNVNVHFKAGKLLVEWL-EDNSIYLSGSVEEVFRGEIEL 274
>gi|452748543|ref|ZP_21948322.1| diaminopimelate epimerase [Pseudomonas stutzeri NF13]
gi|452007717|gb|EMD99970.1| diaminopimelate epimerase [Pseudomonas stutzeri NF13]
Length = 276
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 128/290 (44%), Positives = 169/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ G+G D ++ P N D+
Sbjct: 2 LLRFTKMHGLGNDFMVID-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I +I+ DG+++VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVVD-KRLTVKRKIKVETKGGIIELDIRPDGQIRVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P +Q + L+VD + + VSMGNPH V L+V
Sbjct: 120 MGPPRLTPADIPF----QAEQEALSYPLEVDDQRVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A E+GPK EHH FP R N F++++ ++RVWERGAG T ACGTGACA
Sbjct: 167 DNVEQAPVHELGPKIEHHPRFPQRVNAGFLQVVDRRHARLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + ++LPGG L IEW V MTGPA VF G V L
Sbjct: 227 AVAAIRQGWMDSPLQIELPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276
>gi|444333387|ref|ZP_21149199.1| LOW QUALITY PROTEIN: diaminopimelate epimerase [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|443551785|gb|ELT59506.1| LOW QUALITY PROTEIN: diaminopimelate epimerase [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 273
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 168/290 (57%), Gaps = 22/290 (7%)
Query: 79 LHFVKYHGLGNDFILVD--NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTD 135
+ F K HGLGNDF++VD +N P E +L DR+ G+G D ++ P + D
Sbjct: 1 MQFSKMHGLGNDFMVVDAMTQNIYFP---TETIKRLADRHRGVGFDQLLVVEPPYDPELD 57
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ RIFN+DGSE CGNG RCFARF+ N K S + G L+ +++DG V+V
Sbjct: 58 FHYRIFNADGSEVAQCGNGARCFARFVTLKGLTNKKTSRSTQNGKMLLT--VKEDGNVRV 115
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQN 253
+MGEPI + + +P + + + ++++E+ V C VSMGNPHCV Q
Sbjct: 116 NMGEPIWEPNKIPFTANKFEKNYILRTEIQT------VLCSVVSMGNPHCVV------QV 163
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ N+ ++GP E+H FP R N F+++++ +K+RV+ERG G T ACG+GACA
Sbjct: 164 EDIQTANVEQLGPLLENHERFPERVNAGFMQVVNRHHIKLRVYERGTGETQACGSGACAA 223
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +++G + VDLPGG L IEW+ E + +YMTG A V+ G V L
Sbjct: 224 VAVGIMQGVLDNEVQVDLPGGSLTIEWQGEGHPLYMTGSATHVYDGVVCL 273
>gi|304398151|ref|ZP_07380026.1| diaminopimelate epimerase [Pantoea sp. aB]
gi|304354437|gb|EFM18809.1| diaminopimelate epimerase [Pantoea sp. aB]
Length = 274
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 165/286 (57%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ +L+ L K V T G +V + D +V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-QLKGLTNKTDIRVSTQNGRMVLTVTPDDQVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP + VP ANK +++ L V + VSMGNPHCV + +++K
Sbjct: 119 GEPNFEPQQVP--FRANKAENLYL--LRVAEQTVMLGAVSMGNPHCVI----QVESVKTA 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++ L +GP E H FP R N F+EII+P +++RV+ERGAG T ACG+GACA V
Sbjct: 171 QVEL--LGPILESHERFPDRVNVGFMEIINPEHIRLRVYERGAGETQACGSGACAAVACG 228
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G VDLPGG L I WK +YMTGPA V+ G + L
Sbjct: 229 IQQGILAPNVRVDLPGGTLHISWKGAGQPLYMTGPATHVYDGFIHL 274
>gi|298387345|ref|ZP_06996898.1| diaminopimelate epimerase [Bacteroides sp. 1_1_14]
gi|298260014|gb|EFI02885.1| diaminopimelate epimerase [Bacteroides sp. 1_1_14]
Length = 267
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 166/288 (57%), Gaps = 32/288 (11%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAA-KLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K HG GND+I VD + P PE+ A + + GIG+DG+I + + D++
Sbjct: 5 IKFTKMHGAGNDYIYVDT--TRYPIAAPEKKAIEWSKFHTGIGSDGLIL-IGSSDKADFS 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KV 193
MRIFN+DGSE MCGNG RC +++ E L K+ T+ T +G+ V ++ +G V
Sbjct: 62 MRIFNADGSEAMMCGNGSRCVGKYVYEY-GLTAKKEITLDTRSGIKVLKLHVEGGKVTAV 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VD+G P+ T DQ +S T VSMGNPH VTF
Sbjct: 121 TVDIGSPL------ETEAVDFGDQFPFQS-----------TRVSMGNPHLVTFVED---- 159
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ ++NL EIGP+ E++ +FP RTN EF +I+ ++MRVWERG+G T ACGTGACA
Sbjct: 160 --ITQINLPEIGPQLENYHLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACAT 217
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VAAVL G A R+C + + GG + IEW+E H+ MTGPA VF G +
Sbjct: 218 AVAAVLHGLAGRKCDIIMDGGTVTIEWEEATGHILMTGPATKVFDGEM 265
>gi|254182206|ref|ZP_04888803.1| diaminopimelate epimerase [Burkholderia pseudomallei 1655]
gi|184212744|gb|EDU09787.1| diaminopimelate epimerase [Burkholderia pseudomallei 1655]
Length = 289
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 161/293 (54%), Gaps = 16/293 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D P +T Q L DR+FGIGAD ++ P V+ D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDDADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L GK S V G+I +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTGKASVRVEVKHGVITLTMQDNGEVVVDM 121
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTF-GTKEGQN 253
G P+ + + VP + L ++ + L V+GV ++ VSMGNPH V E
Sbjct: 122 GAPVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVDDAEAFA 181
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
++VD GP E FP R N F++I+S ++ +RV+ERGAG TLACGTGACA
Sbjct: 182 VRVD-------GPAIERDPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAA 234
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWK---EEDNHVYMTGPAEVVFYGSVLL 363
V A + G + TV GG L I W +E + M GPA VF G + L
Sbjct: 235 VAAGIRRGRLDSPVTVHTHGGTLTISWNGACDERAPLMMAGPATTVFEGVIEL 287
>gi|424925591|ref|ZP_18348952.1| diaminopimelate epimerase [Pseudomonas fluorescens R124]
gi|404306751|gb|EJZ60713.1| diaminopimelate epimerase [Pseudomonas fluorescens R124]
Length = 276
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 171/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I ++++DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKGGIIELDVRNDGQIGVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P + A +L+VDG + VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFNAPA----QATSYQLEVDGTTVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I ++ ++RVWERGAG T ACGTGACA
Sbjct: 167 QDINNAPVHELGPKIEHHPRFPARVNVGFIQVIDRNRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLMIDLPGGRLSIEWAGPGQPVLMTGPAVRVYEGQVRL 276
>gi|262273211|ref|ZP_06051027.1| diaminopimelate epimerase [Grimontia hollisae CIP 101886]
gi|262222789|gb|EEY74098.1| diaminopimelate epimerase [Grimontia hollisae CIP 101886]
Length = 276
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/284 (39%), Positives = 164/284 (57%), Gaps = 13/284 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +P+ +L DRN G+G D ++ P + +D+
Sbjct: 3 IQFSKMHGLGNDFMVVDCV-TQNAYFSPDMIRRLADRNTGVGFDQLLVVEPPYDPESDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+D SE CGNG RCFARF+ ++ L K V T +G +V ++ D +V V+M
Sbjct: 62 YRIFNADSSEVAQCGNGARCFARFV-RMKGLTNKNQIQVSTKSGKMVLKMDGDDQVTVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEPI + +P +A + +++ V+ V VSMGNPHCVT VD
Sbjct: 121 GEPIWAPAKIPFRANAEEKTYILR----VEDTTLFVGAVSMGNPHCVTVVDN------VD 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++ +GP E H FP R N F++I+S +++++RV+ERGAG T ACG+GACA V
Sbjct: 171 TFDVEGLGPLVESHERFPERVNAGFMQIVSRNEIRLRVYERGAGETQACGSGACAAVAVG 230
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+ +G + TV L GG L I W+ + +YMTGPA V+ G +
Sbjct: 231 IQQGLLDESVTVHLKGGDLKIRWRGAGHPLYMTGPASHVYDGQI 274
>gi|282600071|ref|ZP_05972889.2| diaminopimelate epimerase [Providencia rustigianii DSM 4541]
gi|282566942|gb|EFB72477.1| diaminopimelate epimerase [Providencia rustigianii DSM 4541]
Length = 278
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 163/291 (56%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P D+
Sbjct: 5 MQFSKMHGLGNDFMVVDGV-TQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDFH 63
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T +G + I ++ V V+M
Sbjct: 64 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKQKIKVSTQSGRMTLTINENDDVCVNM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + VP + +++++ + V C VSMGNPHCV ++
Sbjct: 123 GEPEFEPQKVPFRAVKEEKTYIIRAQ------ERTVLCGVVSMGNPHCV---------VQ 167
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ + AE+ GP E H FP R N F+EI+S +++RV+ERGAG T ACG+GACA
Sbjct: 168 VESVQTAEVEVLGPALESHERFPERANIGFMEIVSAEHIRLRVYERGAGETQACGSGACA 227
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G +R VDLPGG LDI W +YMTGPA V+ G + +
Sbjct: 228 AVAVGIGQGLLSKRVRVDLPGGSLDISWDGPGTPLYMTGPATHVYDGVIQI 278
>gi|422007109|ref|ZP_16354095.1| diaminopimelate epimerase [Providencia rettgeri Dmel1]
gi|414096999|gb|EKT58654.1| diaminopimelate epimerase [Providencia rettgeri Dmel1]
Length = 274
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 165/291 (56%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P D+
Sbjct: 1 MQFSKMHGLGNDFMVVDGV-TQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T +G + I ++ V V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKQKIKVSTQSGRMTLTINENDDVCVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
G P + VP + +++++ + V C VSMGNPHCV ++
Sbjct: 119 GVPDFEPQRVPFRAVKEEKTYIIRAQ------ERTVLCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ ++ AE+ GP E+H FP R N F+EIIS +++RV+ERGAG T ACG+GACA
Sbjct: 164 VESIHTAEVEVLGPALENHERFPERANIGFMEIISADHIRLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G +R VDLPGG LDI W+ +YMTGPA V+ G + L
Sbjct: 224 AVAVGISQGLLAKRVKVDLPGGSLDISWEGPGAPLYMTGPATHVYDGVIQL 274
>gi|349686603|ref|ZP_08897745.1| diaminopimelate epimerase [Gluconacetobacter oboediens 174Bp2]
Length = 273
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/281 (42%), Positives = 155/281 (55%), Gaps = 20/281 (7%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPG-VNGTDYTMR 139
F+K HGLGNDF++VD R +TP + A LCDR+ GIG D + P G D +R
Sbjct: 4 FLKMHGLGNDFVVVDERVHRH-DLTPARIAALCDRHTGIGCDQFVTLRPACAEGADVFVR 62
Query: 140 IFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
FN+DGSE CGN RC A +A G++ + T AG++ I G V VDMG
Sbjct: 63 FFNADGSESGACGNASRCIADLVARE---TGQEHVGLQTRAGVLHATIIRPGLVTVDMGT 119
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P +DVP + +++ L V G + VSMGNPH F + D +
Sbjct: 120 PAQDWADVPLA------EAMDTLHLPVAG---DPAAVSMGNPHATFFLSMP------DAM 164
Query: 260 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVL 319
+ GP EHH +FP R N F + +P +++RVWERG+G T ACG+GACA VV AV
Sbjct: 165 DPCVAGPVLEHHPLFPHRANIGFAHVTAPDAMRLRVWERGSGLTRACGSGACAAVVNAVR 224
Query: 320 EGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
G ER CTV++ GG L I W+E D HV MTGPA F G+
Sbjct: 225 RGLVERTCTVEMDGGELTITWREGDGHVLMTGPATTSFMGT 265
>gi|329297031|ref|ZP_08254367.1| diaminopimelate epimerase [Plautia stali symbiont]
Length = 274
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/286 (41%), Positives = 159/286 (55%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K V T G +V + D V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKSDIRVSTQTGRMVLSVTSDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP VP L ANK +++ + V + VSMGNPHCV Q V
Sbjct: 119 GEPNFDPQQVP--LRANKAENLYLQRVAEQTVMFG--AVSMGNPHCVI------QVESVK 168
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ +GP E H FP R N F+E+++P +++RV+ERGAG T ACG+GACA V
Sbjct: 169 TAAVETLGPALESHERFPERVNVGFMEVVNPEHIRLRVYERGAGETQACGSGACAAVACG 228
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G + VDLPGG L I WK ++MTGPA V+ G + L
Sbjct: 229 IQQGILAVKVRVDLPGGTLHIAWKGAGQPLFMTGPATHVYDGFIHL 274
>gi|432891405|ref|ZP_20104123.1| diaminopimelate epimerase [Escherichia coli KTE165]
gi|431429810|gb|ELH11645.1| diaminopimelate epimerase [Escherichia coli KTE165]
Length = 274
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 163/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD +V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDQVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|386019202|ref|YP_005937226.1| diaminopimelate epimerase [Pseudomonas stutzeri DSM 4166]
gi|327479174|gb|AEA82484.1| diaminopimelate epimerase [Pseudomonas stutzeri DSM 4166]
Length = 276
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 128/290 (44%), Positives = 169/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ G+G D ++ P N D+
Sbjct: 2 LLRFTKMHGLGNDFMVID-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I +I+ DG+++VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVVD-KRLTVKRKIKVETKGGIIELDIRPDGQIRVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L VP + ++ + L+VDG + + VSMGNPH V L+V
Sbjct: 120 MGPPRL----VPAEIPFQAEREALSYSLEVDGQQVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A E+GPK EHH FP R N F++++ ++RVWERGAG T ACGTGACA
Sbjct: 167 DSVERAPVHELGPKIEHHPRFPQRVNVGFLQVVDRRHARLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + ++LPGG L IEW V MTGPA VF G V L
Sbjct: 227 AVAAIRQGWMDSPVQIELPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276
>gi|297544793|ref|YP_003677095.1| diaminopimelate epimerase [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296842568|gb|ADH61084.1| diaminopimelate epimerase [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 274
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/290 (42%), Positives = 170/290 (58%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYT 137
+ F K HGLGNDFI+++ + + E AAKLCDR+FGIGADG++ P G+ D
Sbjct: 1 MKFTKMHGLGNDFIVIEALENVD---YSELAAKLCDRHFGIGADGLLVVEPSGI--ADIR 55
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-QDDGKV--- 193
MRIFN+DGSE EMCGNG RCFA+++ E + K+ V T AG+I+PE+ +GKV
Sbjct: 56 MRIFNADGSEAEMCGNGSRCFAKYVYE-RGIVKKEKMAVETLAGVIMPEVFVKNGKVESV 114
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
KV MG PI + S +P Q + + +DG + +T + +G PH + F +N
Sbjct: 115 KVYMGNPIFETSKIPIKTDK---QKFINEPVKIDGKVYKLTSIRVGVPHTIVFVESLDEN 171
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ + E+G K E S+FP TN +FV++ + +R WERG G TLACG+GACA
Sbjct: 172 M------IKELGSKIEKSSLFPQGTNVDFVKVEDKENIFVRTWERGVGLTLACGSGACAS 225
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA+ + G ER V G L +EW EDN +Y++G E VF G + L
Sbjct: 226 AVASAVLGKTERNVNVHFKAGKLFVEWL-EDNSIYLSGKVEEVFRGEIEL 274
>gi|336248071|ref|YP_004591781.1| diaminopimelate epimerase [Enterobacter aerogenes KCTC 2190]
gi|334734127|gb|AEG96502.1| diaminopimelate epimerase [Enterobacter aerogenes KCTC 2190]
Length = 274
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + V C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSQVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCVI------QVDN 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ S +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVMESHERFPERANIGFMQVVERSHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGQPLYMTGPAAHVYDGFIHL 274
>gi|429083271|ref|ZP_19146315.1| Diaminopimelate epimerase [Cronobacter condimenti 1330]
gi|426547887|emb|CCJ72356.1| Diaminopimelate epimerase [Cronobacter condimenti 1330]
Length = 274
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 167/291 (57%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPEMIRRLADRHHGVGFDQLLIVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVNEDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP+ S VP + + ++++ + V C VSMGNPHCV ++
Sbjct: 119 GEPVFDPSLVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD ++ A + GP E H FP R N F+++++P +++RV+ERGAG T ACG+GAC
Sbjct: 164 VDDVSTAPVETLGPLMESHERFPERANIGFMQVMNPEHIRLRVFERGAGETQACGSGACG 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G + VDLPGG LDI WK N ++MTGPA V+ G + L
Sbjct: 224 AVAVGIQQGLLAAQVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDGFIHL 274
>gi|237727925|ref|ZP_04558406.1| diaminopimelate epimerase [Citrobacter sp. 30_2]
gi|226910374|gb|EEH96292.1| diaminopimelate epimerase [Citrobacter sp. 30_2]
Length = 275
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 162/289 (56%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MMQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+
Sbjct: 60 HYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDELVRVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP + S VP + + ++++ + V C VSMGNPHCV Q
Sbjct: 119 MGEPNFEPSQVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCVI------QVD 166
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 DVDTATVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAV 226
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 AVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 275
>gi|365103539|ref|ZP_09333405.1| diaminopimelate epimerase [Citrobacter freundii 4_7_47CFAA]
gi|395230314|ref|ZP_10408619.1| diaminopimelate epimerase [Citrobacter sp. A1]
gi|424730822|ref|ZP_18159415.1| diaminopimelate epimerase [Citrobacter sp. L17]
gi|363645211|gb|EHL84482.1| diaminopimelate epimerase [Citrobacter freundii 4_7_47CFAA]
gi|394716045|gb|EJF21822.1| diaminopimelate epimerase [Citrobacter sp. A1]
gi|422894727|gb|EKU34535.1| diaminopimelate epimerase [Citrobacter sp. L17]
Length = 274
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + V C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSQVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTATVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 274
>gi|410945107|ref|ZP_11376848.1| diaminopimelate epimerase [Gluconobacter frateurii NBRC 101659]
Length = 257
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/284 (41%), Positives = 154/284 (54%), Gaps = 31/284 (10%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADG-VIFAMPGVNGTDYT 137
L F K HGLGNDFI++D R T P + E KLCDR FG+G D V+ + P G D
Sbjct: 3 LSFTKMHGLGNDFIIIDGR-ETAPALNTETIQKLCDRRFGVGCDQLVVLSPPTAEGADVL 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
+R FN DGSE CGN RC + F+ + T+ T AGL+ P QD + V+M
Sbjct: 62 VRFFNGDGSESGACGNASRCVSVFVG--------GNPTLQTSAGLL-PTSQDGDLITVNM 112
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G+P D+P + + + + SMGNPH FG D
Sbjct: 113 GQPRFDWQDIPLARECDTLHLPLH----------DAAACSMGNPHATVFG---------D 153
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++GP E+ +FP R N F +II+P+ +++RVWERGAG TLACG+GACA VV A
Sbjct: 154 VSRAEDLGPSLENSPLFPQRANIGFADIITPTHMRLRVWERGAGLTLACGSGACAAVVNA 213
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V G AER C V + GG L I W +++ V MTGPA VF+G +
Sbjct: 214 VRRGLAERTCVVTMDGGDLRITW-QDNGDVLMTGPATTVFHGEL 256
>gi|296136667|ref|YP_003643909.1| diaminopimelate epimerase [Thiomonas intermedia K12]
gi|295796789|gb|ADG31579.1| diaminopimelate epimerase [Thiomonas intermedia K12]
Length = 287
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/291 (41%), Positives = 158/291 (54%), Gaps = 20/291 (6%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIF--AMPGVNGTDYTM 138
F K HG GNDF+++D S + Q L DR+FG+GAD ++ A P D+
Sbjct: 5 FTKMHGAGNDFVVLDATRSPLA-LNAAQLRLLADRHFGVGADQILLVEAAPSPE-VDFGY 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RIFN+DG E E CGNG RCF ++ + L K+ V T +GLI PE+Q DG+V VDMG
Sbjct: 63 RIFNADGGEVEQCGNGARCFVAYV-HGKGLTAKRRIRVQTLSGLIEPELQPDGRVTVDMG 121
Query: 199 EPILKASDVPTSLSANKDQSVVKSE---LDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
P+ VP + + V E LD+ G V+ +SMGNPH V +
Sbjct: 122 APVFDLPRVPFEAHGLRPRQVDGWEQWPLDLAGATAWVSVLSMGNPHAVQ---------R 172
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD ++ A + GP EHH FP R N F++I+ +++RVWERGAG TLACGTGACA
Sbjct: 173 VDDVDTAPVLRDGPLIEHHPRFPRRVNAGFMQIVDAQHIRLRVWERGAGETLACGTGACA 232
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VVA + G + V GG L I W V MTGPA VF G + L
Sbjct: 233 AVVAGLRHGWLQGAVDVQTHGGELTISWAGAGQPVRMTGPAAFVFDGMIDL 283
>gi|421847353|ref|ZP_16280492.1| diaminopimelate epimerase [Citrobacter freundii ATCC 8090 = MTCC
1658]
gi|411771303|gb|EKS55004.1| diaminopimelate epimerase [Citrobacter freundii ATCC 8090 = MTCC
1658]
gi|455645196|gb|EMF24260.1| diaminopimelate epimerase [Citrobacter freundii GTC 09479]
Length = 274
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/288 (41%), Positives = 161/288 (55%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP ANK + + + V C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSQVP--FRANKAEKTYIMRV----AEQTVLCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTATVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 274
>gi|424065382|ref|ZP_17802860.1| diaminopimelate epimerase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|408003406|gb|EKG43591.1| diaminopimelate epimerase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
Length = 276
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 168/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKSGIIELDIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P VP + Q +DVDG ++ VSMGNPH V L+V
Sbjct: 120 MGPPRF----VPEEIPFEAAQQATSYTVDVDGQNIDMAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A E+GPK EHH FPAR N F+ ++ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINNAPVNELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276
>gi|389682357|ref|ZP_10173699.1| diaminopimelate epimerase [Pseudomonas chlororaphis O6]
gi|388553800|gb|EIM17051.1| diaminopimelate epimerase [Pseudomonas chlororaphis O6]
Length = 276
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 171/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DRN G+G D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRNTGVGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T +G+I ++++DG++ VD
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLD-KRLTTKRQIRVETKSGIIELDVRNDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +P A + +++VDG + VSMGNPH V L+V
Sbjct: 120 MGAPRLVPEQIPFVAPAQ----ALSYQVEVDGQSVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ +N A E+GPK EHHS FPAR N F+++I + ++RVWERGAG T ACGTGACA
Sbjct: 167 NDINSAPVHELGPKIEHHSRFPARVNVGFIQVIDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVKMTGPAVRVYEGQVRL 276
>gi|407367257|ref|ZP_11113789.1| diaminopimelate epimerase [Pseudomonas mandelii JR-1]
Length = 276
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 131/290 (45%), Positives = 173/290 (59%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKSGIIELDIRSDGQIGVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L VPT + + + + +LDV+G + VSMGNPH V L+V
Sbjct: 120 MGAPRL----VPTEIPFDAPEQALSYKLDVEGTTVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I ++ ++RVWERGAG T ACGTGACA
Sbjct: 167 SDINNAPVHELGPKIEHHPRFPARVNVGFLQVIDRNRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPAVRVYEGQVRL 276
>gi|326796186|ref|YP_004314006.1| diaminopimelate epimerase [Marinomonas mediterranea MMB-1]
gi|326546950|gb|ADZ92170.1| Diaminopimelate epimerase [Marinomonas mediterranea MMB-1]
Length = 278
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/291 (41%), Positives = 165/291 (56%), Gaps = 19/291 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF +VD S + EQ L DRN GIG D ++ P + D+
Sbjct: 2 LLKFSKMHGLGNDFAVVDAV-SRKVYFNKEQIEFLGDRNRGIGFDQLLIVEPPTSPDMDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RI+NS+GSE E CGNG RCFA+F+ E ++L K V T G I +QDDG+V VD
Sbjct: 61 RYRIYNSNGSEVEHCGNGARCFAKFVIE-KDLTNKSVINVETKQGQIQLHVQDDGEVTVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGV-KWNVTCVSMGNPHCVTFGTKEGQNLK 255
MG P +D+P + +D L+++G +T VS+GNPH V ++
Sbjct: 120 MGAPSFAPADLPFDATEKQDDLYT---LNLEGYGSVELTPVSVGNPHAV---------IR 167
Query: 256 VDKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD+L ++ +GP E HS FPA N F+E++S ++ +RV+ER G T ACGTG CA
Sbjct: 168 VDRLTDEIVSTVGPLVESHSAFPANVNVGFMEVMSRDEVNLRVYERDVGETQACGTGTCA 227
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+VA + +G + T L GG L IEW+ E + + MTGPA VF G + L
Sbjct: 228 AIVAGIRQGWLNSKVTAHLLGGDLRIEWQGEGSPIMMTGPATKVFEGQIYL 278
>gi|386334883|ref|YP_006031054.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
solanacearum Po82]
gi|334197333|gb|AEG70518.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
solanacearum Po82]
Length = 307
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 158/290 (54%), Gaps = 12/290 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
LHF K HG GNDF+++D T TPEQ + DR+FG+GAD ++ D+
Sbjct: 18 LHFTKMHGAGNDFVVLDG-IETPIDFTPEQWRAIADRHFGVGADQLLLVERATRPDVDFR 76
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L K++ V G+ +Q DG+V VDM
Sbjct: 77 YRIFNHDGGEVEHCGNGARCFVKFVTD-RGLTDKRTIRVEVMHGIATLTMQPDGQVTVDM 135
Query: 198 GEPILKASD---VPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ +A+ VP L + + L V+G ++ VSMGNPH V
Sbjct: 136 GAPVFEAARLPFVPDGLPTRVEGRDTQHALQVNGRTAWLSTVSMGNPHAVQVVDD----- 190
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ + E GP E H+VFP R N F+EI+ +++RV+ERGAG TLACGTGACA V
Sbjct: 191 -AEAFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAV 249
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VA + G + V GG L I W E V MTGPA VF G++ L+
Sbjct: 250 VAGIRRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDLD 299
>gi|282849804|ref|ZP_06259188.1| diaminopimelate epimerase [Veillonella parvula ATCC 17745]
gi|294792722|ref|ZP_06757869.1| diaminopimelate epimerase [Veillonella sp. 6_1_27]
gi|294794473|ref|ZP_06759609.1| diaminopimelate epimerase [Veillonella sp. 3_1_44]
gi|416999338|ref|ZP_11939929.1| diaminopimelate epimerase [Veillonella parvula ACS-068-V-Sch12]
gi|282580741|gb|EFB86140.1| diaminopimelate epimerase [Veillonella parvula ATCC 17745]
gi|294454803|gb|EFG23176.1| diaminopimelate epimerase [Veillonella sp. 3_1_44]
gi|294456621|gb|EFG24984.1| diaminopimelate epimerase [Veillonella sp. 6_1_27]
gi|333976778|gb|EGL77640.1| diaminopimelate epimerase [Veillonella parvula ACS-068-V-Sch12]
Length = 277
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/286 (41%), Positives = 164/286 (57%), Gaps = 23/286 (8%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ K HGLGNDFIL + T T + A +LCDR GIGADG+ +P D M
Sbjct: 1 MKLTKMHGLGNDFILFADPQGTSKDYT-DLAIRLCDRRTGIGADGLAILVPS-ETCDVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG----KVK 194
RI NSDGSE EMCGN +RCFA++ E K++FT+ T AG++ P + + +V
Sbjct: 59 RIINSDGSEAEMCGNAIRCFAKYAYE-HGETTKETFTIETLAGVMKPTLTIENGIVTQVT 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG+P KA D+P +++ +K V+ +L+V+G V+ V +G PH F
Sbjct: 118 VDMGKPFFKAQDIPMNVNMDK---VIDVDLNVNGETVTVSSVLLGVPHTEVF-------- 166
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+D + A + GP E H FPA TN ++E+++ +K+R WERGAGATLACGTG+C
Sbjct: 167 -IDDITKAPVTTQGPILEKHDAFPANTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSC 225
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVF 357
A + +G R V+L G L I + ED V MTGPAE VF
Sbjct: 226 ASAAMSFEKGLTGREVDVELYLGTLHISYL-EDGTVLMTGPAEEVF 270
>gi|283834574|ref|ZP_06354315.1| diaminopimelate epimerase [Citrobacter youngae ATCC 29220]
gi|291069702|gb|EFE07811.1| diaminopimelate epimerase [Citrobacter youngae ATCC 29220]
Length = 274
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + V C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSQVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTATVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 274
>gi|420376479|ref|ZP_14876224.1| diaminopimelate epimerase [Shigella flexneri 1235-66]
gi|391303404|gb|EIQ61241.1| diaminopimelate epimerase [Shigella flexneri 1235-66]
Length = 274
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/288 (41%), Positives = 161/288 (55%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP ANK + + + V C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSQVP--FRANKAEKTYIMRV----AEQTVLCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTATVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLADEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 274
>gi|392422810|ref|YP_006459414.1| diaminopimelate epimerase [Pseudomonas stutzeri CCUG 29243]
gi|390984998|gb|AFM34991.1| diaminopimelate epimerase [Pseudomonas stutzeri CCUG 29243]
Length = 276
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 128/290 (44%), Positives = 169/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ G+G D ++ P N D+
Sbjct: 2 LLRFTKMHGLGNDFMVID-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I +I+ DG+++VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVVD-KRLTVKRKIKVETKGGIIELDIRPDGQIRVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L VP+ + DQ + L+VDG + + VSMGNPH V L+V
Sbjct: 120 MGPPRL----VPSEIPFQADQEALSYPLEVDGQRVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A E+GPK EHH F R N F++++ ++RVWERGAG T ACGTGACA
Sbjct: 167 DSVEQAPVHELGPKIEHHPRFAQRVNVGFLQVVDRRHARLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + ++LPGG L IEW V M+GPA VF G V L
Sbjct: 227 AVAAIRQGWMDSPVQIELPGGRLSIEWAGPGQPVMMSGPAVRVFEGQVRL 276
>gi|408479698|ref|ZP_11185917.1| diaminopimelate epimerase [Pseudomonas sp. R81]
Length = 276
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 171/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPSNPEVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ V+
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKSGVIELDIRSDGQISVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P + LDVDG + VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFQAP----EQAASYALDVDGKTVEIAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ +N A E+GPK EHH FPAR N F+++I ++ ++RVWERGAG T ACGTGACA
Sbjct: 167 NDINNAPVHELGPKIEHHPRFPARVNVGFLQVIDRTRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPASRVYEGQVRL 276
>gi|170693975|ref|ZP_02885131.1| Diaminopimelate epimerase [Burkholderia graminis C4D1M]
gi|170141047|gb|EDT09219.1| Diaminopimelate epimerase [Burkholderia graminis C4D1M]
Length = 300
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 160/291 (54%), Gaps = 14/291 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D +TPEQ L DR+FG+GAD ++ P V+G D+
Sbjct: 16 LKFTKMHGAGNDFVVLDGYTQA-LNLTPEQVRALADRHFGVGADQLLLVEKPTVDGVDFR 74
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L ++S V G I +Q++G+V VDM
Sbjct: 75 YRIFNCDGGEVEHCGNGARCFVKFVRD-SGLTDQRSVRVQVQNGTITLTMQENGEVLVDM 133
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + VP L ++ + LDV+G ++ VSMGNPH V
Sbjct: 134 GSPVFEPERVPFATKGLQGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVVDD----- 188
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V+ + GP E H+ FP + N F++I+ S++K+RV+ERGAG TLACGTGACA V
Sbjct: 189 -VEAFPVLVEGPVIERHARFPQKVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAV 247
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW--KEEDNHVYMTGPAEVVFYGSVLL 363
A + G + V GG L I W +E + M GPA VF G + L
Sbjct: 248 AAGIRRGLLDAPVLVHTHGGKLTISWDSNKESEPLLMAGPATTVFQGEIEL 298
>gi|299068297|emb|CBJ39518.1| diaminopimelate epimerase [Ralstonia solanacearum CMR15]
Length = 292
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 159/290 (54%), Gaps = 12/290 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
LHF K HG GNDF+++D +T TPEQ + DR+FG+GAD ++ D+
Sbjct: 3 LHFTKMHGAGNDFVVLDG-IATPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L K++ V G+ +Q DG+V VDM
Sbjct: 62 YRIFNHDGGEVEQCGNGARCFVKFVTD-RGLTDKRTIRVEVMNGIATLTMQPDGQVTVDM 120
Query: 198 GEPILKASD---VPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ +A+ VP L + + L ++G ++ VSMGNPH V + Q
Sbjct: 121 GAPVFEAARLPFVPDGLPTRVEGRDTQHALQINGRTAWLSTVSMGNPHAVQV-VDDAQAF 179
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V E GP E H+VFP R N F+EI +++RV+ERGAG TLACGTGACA V
Sbjct: 180 PV-----REDGPLIESHAVFPRRVNAGFMEIADRHAIRLRVYERGAGETLACGTGACAAV 234
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VA + G + V GG L I W E V MTGPA VF G++ L+
Sbjct: 235 VAGIRRGLLDSPVKVATHGGDLTIAWAGEGEPVMMTGPATTVFEGTLDLD 284
>gi|119896885|ref|YP_932098.1| diaminopimelate epimerase [Azoarcus sp. BH72]
gi|166224239|sp|A1K306.1|DAPF_AZOSB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|119669298|emb|CAL93211.1| DapF protein [Azoarcus sp. BH72]
Length = 277
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/286 (41%), Positives = 161/286 (56%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYT 137
+ F K HGLGNDF+++D T +TP + + DR+FG+G D ++ P G + D+
Sbjct: 3 IRFTKMHGLGNDFVVIDA-TRTPVDLTPARVKAIADRHFGVGCDQLLVVEPPGSDEVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DG E E CGNG RCF RF+ + + L K+ V T AG+I P ++ DG V VDM
Sbjct: 62 YRIFNADGGEVEQCGNGARCFVRFVHD-KGLTDKREIRVETRAGVIAPALRPDGLVSVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L + +P ++ D V +L D V +T VSMGNPH V VD
Sbjct: 121 GVPELSPARIP--FVSDSDAWVQPLQLAEDTVA--ITAVSMGNPHAVQV------VADVD 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+A G + E H FPAR N F++++ +++RV+ERGAG TLACGTGACA VVA
Sbjct: 171 TAPVARQGAEIECHPRFPARVNAGFMQVVDAGHIRLRVFERGAGETLACGTGACAAVVAG 230
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ G V+ GG L+I W V MTGPA VF G + L
Sbjct: 231 IGRGLLVSPVRVETRGGELEIAWAGPGTPVVMTGPAVTVFEGELEL 276
>gi|117927013|ref|YP_867630.1| diaminopimelate epimerase [Magnetococcus marinus MC-1]
gi|166225728|sp|A0LE31.1|DAPF_MAGSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|117610769|gb|ABK46224.1| diaminopimelate epimerase [Magnetococcus marinus MC-1]
Length = 278
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/284 (42%), Positives = 171/284 (60%), Gaps = 16/284 (5%)
Query: 80 HFVKYHGLGNDFILVDNRNSTEPR-ITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
F+K HGLGNDF+++D+ S PR ++P++A DR G+G D V+ +PGV G D M
Sbjct: 4 RFIKMHGLGNDFVVLDHLES--PRELSPQEARFWADRRRGVGCDQVVQLLPGVEGGDAQM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RI+N DGS EMCGN +RC ++ E + + V T AG++ P++ + VDMG
Sbjct: 62 RIYNPDGSRAEMCGNAMRCVGLYLHEQRGM--AAALAVETLAGIMRPQVTSALAITVDMG 119
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
P +P ++D ++ + L+V G + +T +SMGNPH V + +
Sbjct: 120 RPQWAGRAIPL----DQDGEMIDAPLEVGGQSYRMTALSMGNPHGVV------RVADAEG 169
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
LA++GP EHH++FP R N E V+++S S+++MRVWERGAG T ACGTGACA VA +
Sbjct: 170 FELAKVGPLVEHHALFPNRINFEVVQVLSRSRIRMRVWERGAGITPACGTGACAAAVACM 229
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
+G ER CTV L GG L I W E D V M+GPA VF G ++
Sbjct: 230 RQGWVERDCTVVLDGGELQIVWLESDR-VMMSGPATEVFRGELV 272
>gi|418294040|ref|ZP_12905941.1| diaminopimelate epimerase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379065424|gb|EHY78167.1| diaminopimelate epimerase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 276
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ G+G D ++ P N D+
Sbjct: 2 LLRFTKMHGLGNDFMVID-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I +I+ DG+++VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVVD-KRLTVKRKIKVETKGGIIELDIRPDGQIRVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P +Q + L+VDG + + VSMGNPH V L+V
Sbjct: 120 MGPPRLVPADIPF----QAEQEALSYPLEVDGQRVELAVVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A E+GPK EHHS FP R N F++++ ++RVWERGAG T ACGTGACA
Sbjct: 167 DCVEQAPVHELGPKIEHHSRFPQRVNVGFLQVVDRHHARLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DL GG L IEW V MTGPA VF G V L
Sbjct: 227 AVAAIRQGWMDSPVQLDLTGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276
>gi|422015282|ref|ZP_16361881.1| diaminopimelate epimerase [Providencia burhodogranariea DSM 19968]
gi|414099447|gb|EKT61088.1| diaminopimelate epimerase [Providencia burhodogranariea DSM 19968]
Length = 274
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 165/291 (56%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
+ F K HGLGNDF++VD + +PE ++L DR+ G+G D ++ P D+
Sbjct: 1 MQFSKMHGLGNDFMVVDGV-TQNVYFSPELISRLADRHTGVGFDQLLLVEAPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T AG +V + ++ V V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKQKIKVSTQAGRMVLTVNENDDVCVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + VP + ++++ ++ V C VSMGNPHCV ++
Sbjct: 119 GEPEFEPQKVPFRAIKAEKTYIIRA------LERTVLCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ ++ AE+ GP E H FP R N F+E++S +++RV+ERGAG T ACG+GACA
Sbjct: 164 VESVHTAEVEILGPVLESHERFPERANIGFMEVVSADHIRLRVFERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G RR V+LPGG LDI W +YMTGP V+ G + L
Sbjct: 224 AVAIGIQQGLLARRVKVELPGGSLDISWDGPGTPLYMTGPTSHVYDGVLQL 274
>gi|422659297|ref|ZP_16721724.1| diaminopimelate epimerase [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|331017917|gb|EGH97973.1| diaminopimelate epimerase [Pseudomonas syringae pv. lachrymans str.
M302278]
Length = 276
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/290 (45%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I EI+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKGGIIELEIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L ++P +A + +S LDVDG + VSMGNPH V L+V
Sbjct: 120 MGPPRLVPEEIPFQ-TAEQAKSY---SLDVDGQSVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A + GPK EHH FPAR N F+ ++ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINNAPVHTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276
>gi|398990085|ref|ZP_10693292.1| diaminopimelate epimerase [Pseudomonas sp. GM24]
gi|399012413|ref|ZP_10714734.1| diaminopimelate epimerase [Pseudomonas sp. GM16]
gi|398115535|gb|EJM05316.1| diaminopimelate epimerase [Pseudomonas sp. GM16]
gi|398145419|gb|EJM34205.1| diaminopimelate epimerase [Pseudomonas sp. GM24]
Length = 276
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I ++++DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKGGIIELDVRNDGQIGVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P A +L+VDG + VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFEAPAQ----ATSYQLEVDGTTVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I ++ ++RVWERGAG T ACGTGACA
Sbjct: 167 QDINSAPVHELGPKIEHHPRFPARVNVGFLQVIDRNRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVLMTGPAVRVYEGQVRL 276
>gi|444353818|ref|YP_007389962.1| Diaminopimelate epimerase (EC 5.1.1.7) [Enterobacter aerogenes
EA1509E]
gi|443904648|emb|CCG32422.1| Diaminopimelate epimerase (EC 5.1.1.7) [Enterobacter aerogenes
EA1509E]
Length = 274
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + V C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSQVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCVI------QVDN 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ S +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVMESHERFPERANIGFMQVVERSHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLGEEVRVELPGGRLDIAWKGPGQPLYMTGPAAHVYDGFIHL 274
>gi|445494277|ref|ZP_21461321.1| diaminopimelate epimerase DapF [Janthinobacterium sp. HH01]
gi|444790438|gb|ELX11985.1| diaminopimelate epimerase DapF [Janthinobacterium sp. HH01]
Length = 287
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 119/294 (40%), Positives = 162/294 (55%), Gaps = 22/294 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D N +P Q L DR FG+GAD ++ P G D+
Sbjct: 3 LKFTKMHGAGNDFVVIDGINQ-HIDFSPAQWKLLGDRRFGVGADQILLVETPTQPGCDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DG E E CGNG R F +F++E + L ++S TV T AG+I P ++ DG + VDM
Sbjct: 62 YRIFNADGGEVEQCGNGSRAFVKFVSE-KGLTDQRSITVETKAGVIAPRLELDGSITVDM 120
Query: 198 GEPILKASDVPTSLSA-----NKDQSVVKSELDVDGVKWNV--TCVSMGNPHCVTFGTKE 250
G P+L+ VP D ++ L++ G + +V + VSMGNPH V
Sbjct: 121 GAPVLEPQRVPFDADGLHGERQADDTLWPLVLELGGARESVLMSVVSMGNPHAVQV---- 176
Query: 251 GQNLKVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACG 307
VD ++ A + GP EHH FP R N F++I+ +++RV+ERG G TLACG
Sbjct: 177 -----VDDVDAAPVELTGPLIEHHPRFPNRVNAGFMQIVDRGHIRLRVFERGVGETLACG 231
Query: 308 TGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
TG+CA VVA + G + VD GG L I W V +TGPA VF G +
Sbjct: 232 TGSCAAVVAGIRRGLLDSPVRVDARGGQLSISWAGVGQPVLLTGPAVTVFEGEI 285
>gi|291612620|ref|YP_003522777.1| diaminopimelate epimerase [Sideroxydans lithotrophicus ES-1]
gi|291582732|gb|ADE10390.1| diaminopimelate epimerase [Sideroxydans lithotrophicus ES-1]
Length = 276
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 160/290 (55%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HG GNDF+++D R S ++PEQ + DR+FGIG D V+ + D+
Sbjct: 3 LKFTKMHGAGNDFVVLDGVRQSVA--LSPEQIRYIADRHFGIGCDQVLLVEKTQRDEADF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E E CGNG RCF RF+ + +NL K+ V T +GLI P +++DG++ V+
Sbjct: 61 RYRIFNADGGEVEQCGNGARCFVRFVHD-QNLTSKREIVVETKSGLISPRLEEDGRITVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG PI + +P D + V L V +T VSMGNPH V V
Sbjct: 120 MGLPIFDPAQIPFV----SDSTEVIQPLQVGNESVQITVVSMGNPHAVQV---------V 166
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A + GP E H FP R N +++++ +++RV+ERGAG TL+CGTGACA
Sbjct: 167 DDVETAPVATQGPFIEIHPRFPKRVNVGYMQVVDREHIRLRVYERGAGETLSCGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VVA + + V GG L I W E + V MTGPA VF G + L
Sbjct: 227 VVAGIRRKLLDNTVHVATRGGTLSITWAGERSPVMMTGPAITVFEGEINL 276
>gi|387891028|ref|YP_006321326.1| diaminopimelate epimerase [Escherichia blattae DSM 4481]
gi|414595328|ref|ZP_11444954.1| diaminopimelate epimerase [Escherichia blattae NBRC 105725]
gi|386925861|gb|AFJ48815.1| diaminopimelate epimerase [Escherichia blattae DSM 4481]
gi|403193749|dbj|GAB82606.1| diaminopimelate epimerase [Escherichia blattae NBRC 105725]
Length = 274
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 161/288 (55%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE KL DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVYFSPELIRKLSDRHLGVGFDQLLIVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVSEDELVTVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S +P + + ++++ + V C VSMGNPHCV Q
Sbjct: 119 GEPRFEPSQIPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCVI------QVDN 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GAC V
Sbjct: 167 VDTAAVETLGPVMESHERFPERANIGFMQVVDREYIRLRVFERGAGETQACGSGACGAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G R VDLPGG LDI WK N ++MTGPA V+ G + L
Sbjct: 227 VGIQQGLLAGRVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDGFIHL 274
>gi|344173274|emb|CCA88426.1| diaminopimelate epimerase [Ralstonia syzygii R24]
Length = 292
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 159/290 (54%), Gaps = 12/290 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
LHF K HG GNDF+++D T +TPEQ + DR+FG+GAD ++ D+
Sbjct: 3 LHFTKMHGAGNDFVVLDG-IETPIDLTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L K++ V G+ +Q DG+V VDM
Sbjct: 62 YRIFNHDGGEVEHCGNGARCFVKFVTD-RGLTDKRTIRVEVMHGIATLTMQPDGQVTVDM 120
Query: 198 GEPILKASD---VPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ +A+ VP L + + L ++G ++ VSMGNPH V
Sbjct: 121 GAPVFEAARLPFVPDGLPTRVEGGDTQHALQINGRTEWLSTVSMGNPHAVQVVDD----- 175
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ + E GP E H+VFP R N F+EI+ +++RV+ERGAG TLACGTGACA V
Sbjct: 176 -AEAFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAV 234
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VA + G + V GG L I W E V MTGPA VF G++ L+
Sbjct: 235 VAGIRRGLLDSPVKVATHGGDLTIAWAGEGEPVLMTGPATTVFEGTLDLD 284
>gi|422648821|ref|ZP_16711938.1| diaminopimelate epimerase [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|330962352|gb|EGH62612.1| diaminopimelate epimerase [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 276
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 128/290 (44%), Positives = 167/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I +I+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKGGIIELDIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P D+P + Q + ++VDG + VSMGNPH V L+V
Sbjct: 120 MGPPRFAPEDIPFQAA----QQATRYSVEVDGQTVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A + GPK EHH FPAR N F+ ++ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINNAPVHTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPATRVYEGQVRL 276
>gi|398974561|ref|ZP_10685150.1| diaminopimelate epimerase [Pseudomonas sp. GM25]
gi|398141519|gb|EJM30439.1| diaminopimelate epimerase [Pseudomonas sp. GM25]
Length = 276
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 171/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKMWGDRHTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I ++++DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKGGIIELDVRNDGQIGVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P + + ++DVDG ++ VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFQAP----EQALSYQVDVDGTPVDLAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ +N A E+GPK EHH FPAR N F+++I + ++RVWERGAG T ACGTGACA
Sbjct: 167 NDINTAPVHELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVLMTGPAVRVYEGQVRL 276
>gi|398959674|ref|ZP_10678223.1| diaminopimelate epimerase [Pseudomonas sp. GM33]
gi|398144942|gb|EJM33751.1| diaminopimelate epimerase [Pseudomonas sp. GM33]
Length = 276
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 131/290 (45%), Positives = 175/290 (60%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T +G+I ++++DG++ V+
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKRLIRVETKSGIIELDVRNDGQISVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P + + QS ++DVDG ++ VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFQ-APEQAQSY---QVDVDGTPVDLAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I S+ ++RVWERGAG T ACGTGACA
Sbjct: 167 SDINNAPVHELGPKIEHHPRFPARVNVGFLQVIDRSRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276
>gi|339048359|ref|ZP_08647304.1| Diaminopimelate epimerase [gamma proteobacterium IMCC2047]
gi|330722435|gb|EGH00275.1| Diaminopimelate epimerase [gamma proteobacterium IMCC2047]
Length = 261
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/262 (43%), Positives = 157/262 (59%), Gaps = 12/262 (4%)
Query: 103 RITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARF 161
++ P + DR+FGIG D ++ P + D+ RIFN+DGSE E CGNG RCFA F
Sbjct: 11 KLKPHLIPRWADRHFGIGFDQLLVVEPPQSPKADFRYRIFNADGSEVEQCGNGARCFALF 70
Query: 162 IAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVK 221
+ + + L K+ V T G+I + ++ +V VDMG P L+ S +P K+Q++
Sbjct: 71 VRD-KKLTNKKHLIVETKGGVIELHVTNNNEVTVDMGVPTLQPSKIPFE---AKEQAI-S 125
Query: 222 SELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTE 281
+D++G +++ VSMGNPH VT V ++ +GP E HS FP RTN
Sbjct: 126 YIIDINGQPLDISAVSMGNPHGVTLVED------VKTADVETLGPLVEGHSRFPQRTNAG 179
Query: 282 FVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWK 341
F++IISPS++++RV+ERGAG TLACGTGACA VVA L G E TV LPGG L+I W
Sbjct: 180 FMQIISPSEIRLRVYERGAGETLACGTGACAAVVAGRLRGLLEESVTVHLPGGSLNIVWP 239
Query: 342 EEDNHVYMTGPAEVVFYGSVLL 363
E V MTGP + VF G + L
Sbjct: 240 GEGQPVKMTGPCKKVFEGRIYL 261
>gi|398965347|ref|ZP_10680940.1| diaminopimelate epimerase [Pseudomonas sp. GM30]
gi|398147259|gb|EJM35973.1| diaminopimelate epimerase [Pseudomonas sp. GM30]
Length = 276
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I ++++DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKGGIIELDVRNDGQIGVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P A +L+VDG + VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFDAPAQAS----SYQLEVDGTTVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I ++ ++RVWERGAG T ACGTGACA
Sbjct: 167 QDINNAPVHELGPKIEHHPRFPARVNVGFIQVIDRNRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVLMTGPAVRVYEGQVRL 276
>gi|344168690|emb|CCA80992.1| diaminopimelate epimerase [blood disease bacterium R229]
Length = 292
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 159/290 (54%), Gaps = 12/290 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
LHF K HG GNDF+++D T TPEQ + DR+FG+GAD ++ D+
Sbjct: 3 LHFTKMHGAGNDFVVLDG-IETPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L K++ V G+ +Q DG+V VDM
Sbjct: 62 YRIFNHDGGEVEHCGNGARCFVKFVTD-RGLTDKRTIRVEVMHGIATLTMQPDGQVTVDM 120
Query: 198 GEPILKASD---VPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ +A+ VP L + + + L ++G ++ VSMGNPH V
Sbjct: 121 GAPVFEAARLPFVPDGLPTRVEGADTQHALQINGRTEWLSTVSMGNPHAVQVVDD----- 175
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ + E GP E H+VFP R N F+EI+ +++RV+ERGAG TLACGTGACA V
Sbjct: 176 -AEAFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAV 234
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VA + G + V GG L I W E V MTGPA VF G++ L+
Sbjct: 235 VAGIRRGLLDSPVKVATHGGDLTIAWAGEGEPVLMTGPATTVFEGTLDLD 284
>gi|28867456|ref|NP_790075.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|32171419|sp|Q88B09.1|DAPF_PSESM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|28850690|gb|AAO53770.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato str.
DC3000]
Length = 276
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/290 (45%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I EI+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKGGIIELEIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L ++P +A + +S LDVDG + VSMGNPH V L+V
Sbjct: 120 MGPPRLVPEEIPFQ-AAEQAKSY---SLDVDGQTVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A + GPK EHH FPAR N F+ ++ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINNAPVHTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276
>gi|395799851|ref|ZP_10479130.1| diaminopimelate epimerase [Pseudomonas sp. Ag1]
gi|395335693|gb|EJF67555.1| diaminopimelate epimerase [Pseudomonas sp. Ag1]
Length = 276
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 172/290 (59%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A DR+ G+G D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKLWGDRHTGVGFDQLLLVEAPSNPEVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKSGIIELDIRSDGQIGVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P + + + +DVDG N+ VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFQAT----EQALSYPVDVDGKTVNLAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A E+GPK E+H FPAR N F+++I S+ ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINNAPVHELGPKIENHPRFPARVNVGFLQVIDRSRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVKMTGPATRVYEGQVRL 276
>gi|188590966|ref|YP_001795566.1| diaminopimelate epimerase [Cupriavidus taiwanensis LMG 19424]
gi|229807504|sp|B2AGE5.1|DAPF_CUPTR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|170937860|emb|CAP62844.1| diaminopimelate epimerase [Cupriavidus taiwanensis LMG 19424]
Length = 288
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 161/289 (55%), Gaps = 12/289 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
L F K HG GNDF+++D + + +TP Q L R+FG+GAD + I P D+
Sbjct: 3 LKFTKMHGAGNDFVVLDGIHQ-QIDLTPAQWRALASRHFGVGADQILIVEKPTRPDVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI N+DGSE E CGNG RCF RF+ E + + K+S V G+I +QDDG+V VDM
Sbjct: 62 YRIVNADGSEVEHCGNGARCFVRFVTE-QGMTDKRSVRVEVMNGVITLTLQDDGQVTVDM 120
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P L+ + VP L + + + L+V+G ++ VSMGNPH V
Sbjct: 121 GAPELEPARVPFRAQGLPTHAEGADALYGLEVNGRTEWISAVSMGNPHAVQVVDD----- 175
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V+ + + GP EHH FP R N F++++ +++RV+ERGAG TLACGTGACA V
Sbjct: 176 -VENFPVLQDGPVIEHHPAFPNRVNAGFMQVVDRHAIRLRVYERGAGETLACGTGACAAV 234
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA + G + V GG L I W V MTGPA VF GS+ L
Sbjct: 235 VAGIRRGLLDSPVRVHTHGGELTIAWDGGAEPVRMTGPATTVFEGSIDL 283
>gi|331660154|ref|ZP_08361090.1| diaminopimelate epimerase [Escherichia coli TA206]
gi|422371426|ref|ZP_16451806.1| diaminopimelate epimerase [Escherichia coli MS 16-3]
gi|315296790|gb|EFU56082.1| diaminopimelate epimerase [Escherichia coli MS 16-3]
gi|331052722|gb|EGI24757.1| diaminopimelate epimerase [Escherichia coli TA206]
Length = 275
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 162/289 (56%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MMQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+
Sbjct: 60 HYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP + S VP ANK V+ + + + C VSMGNPHCV Q
Sbjct: 119 MGEPNFEPSAVP--FRANK----VEKTYIMRAAEQTILCGVVSMGNPHCVI------QVD 166
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 DVDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAV 226
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 AVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275
>gi|218692085|ref|YP_002400297.1| diaminopimelate epimerase [Escherichia coli ED1a]
gi|254767105|sp|B7MR29.1|DAPF_ECO81 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|218429649|emb|CAR10613.2| diaminopimelate epimerase [Escherichia coli ED1a]
Length = 274
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 119/288 (41%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNTDGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP ANK V+ + + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVP--FRANK----VEKTYIMRAAEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|424070060|ref|ZP_17807500.1| diaminopimelate epimerase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|408001460|gb|EKG41768.1| diaminopimelate epimerase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
Length = 276
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 169/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKSGIIELDIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P VP + + Q +DVDG ++ VSMGNPH V L+V
Sbjct: 120 MGPPRF----VPEEIPFDAAQQATCYTVDVDGQNIDMAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A E+GPK EHH FPAR N F+ ++ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINNAPVHELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276
>gi|423613097|ref|ZP_17588957.1| diaminopimelate epimerase [Bacillus cereus VD107]
gi|401242659|gb|EJR49032.1| diaminopimelate epimerase [Bacillus cereus VD107]
Length = 288
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 165/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIREEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L + FT+ T AG++ E+ +DGKV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFTIETLAGIVTAEVTVEDGKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L ++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTREEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE N V M GPAEV+ G
Sbjct: 233 AVVAAILNGKMERSKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
>gi|170718542|ref|YP_001783749.1| diaminopimelate epimerase [Haemophilus somnus 2336]
gi|189082834|sp|B0UWU6.1|DAPF_HAES2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|168826671|gb|ACA32042.1| Diaminopimelate epimerase [Haemophilus somnus 2336]
Length = 274
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 167/288 (57%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVD--NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTD 135
+ F K HGLGNDF++VD +N P E +L DRN GIG D ++ P + D
Sbjct: 1 MQFSKMHGLGNDFVVVDAVTQNIYFP---TEVIKRLADRNRGIGFDQLLVVEPPYDPDLD 57
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G ++ ++DD V V
Sbjct: 58 FHYRIFNADGSEVSQCGNGARCFARFVV-LKGLTNKKEIAVSTAKGKMMLCVKDDDMVCV 116
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
+MGEPI + + +P +ANK + D+ + V VSMGNPHCVT Q
Sbjct: 117 NMGEPIWEPNKIP--FNANKFEKNYIIRTDIQTLLCGV--VSMGNPHCVT------QVED 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ +GP E H FP R N F++II+ + +K+RV+ERGAG T ACG+GACA V
Sbjct: 167 IQHANIEILGPLLESHERFPERVNAGFMQIINRNHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G VDLPGG L IEW+ + + +YMTG A ++ G + L
Sbjct: 227 VGIMQGVLGSCVQVDLPGGRLMIEWQGKGHPLYMTGEATHIYDGVIRL 274
>gi|423694252|ref|ZP_17668772.1| diaminopimelate epimerase [Pseudomonas fluorescens SS101]
gi|387999384|gb|EIK60713.1| diaminopimelate epimerase [Pseudomonas fluorescens SS101]
Length = 276
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 171/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPSNPEVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I +I++DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKGGVIELDIRNDGQISVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P + + + LDVDG + VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFQAT----EQALSYALDVDGKTVEIAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I ++ ++RVWERG G T ACGTGACA
Sbjct: 167 TDINNAPVHELGPKIEHHPRFPARANVGFLQVIDRNRAQLRVWERGVGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276
>gi|339492624|ref|YP_004712917.1| diaminopimelate epimerase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
gi|338799996|gb|AEJ03828.1| diaminopimelate epimerase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
Length = 276
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/290 (43%), Positives = 169/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ G+G D ++ P N D+
Sbjct: 2 LLRFTKMHGLGNDFMVID-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T G+I +I+ DG+++VD
Sbjct: 61 RYRIFNTDGSEVEQCGNGARCFARFVVD-KRLTVKRKIKVETKGGIIELDIRPDGQIRVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L VP + ++ + L+VDG + + VSMGNPH V L+V
Sbjct: 120 MGPPRL----VPAEIPFQAEREALSYALEVDGQQVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A E+GPK EHH FP R N F++++ ++RVWERGAG T ACGTGACA
Sbjct: 167 DSVERAPVHELGPKIEHHPRFPQRVNVGFLQVVDRRHARLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + ++LPGG L IEW V MTGPA VF G V L
Sbjct: 227 AVAAIRQGWMDSPVQIELPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276
>gi|241661657|ref|YP_002980017.1| diaminopimelate epimerase [Ralstonia pickettii 12D]
gi|240863684|gb|ACS61345.1| diaminopimelate epimerase [Ralstonia pickettii 12D]
Length = 292
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 159/290 (54%), Gaps = 12/290 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
LHF K HG GNDF+++D T TPEQ A + DR+FG+GAD ++ D+
Sbjct: 3 LHFTKMHGAGNDFVVLDGIQ-TPIDFTPEQWAAIADRHFGVGADQLLLVERSTRPDVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L K++ V G+ +QDDG+V VDM
Sbjct: 62 YRIFNHDGGEVEHCGNGARCFVKFVTD-RGLTDKRTVRVEVMNGIATLTMQDDGQVTVDM 120
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ +A+ +P L + + L ++G ++ VSMGNPH V
Sbjct: 121 GAPVFEAARLPFLPEGLPTRVEGDDTQHALQINGRTEWLSTVSMGNPHAVQIVDD----- 175
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ + E GP E H+VFP R N F++I+ +++RV+ERGAG TLACGTGACA V
Sbjct: 176 -TEAFPVLEDGPLIESHAVFPRRVNAGFMQIVDRHSVRLRVYERGAGETLACGTGACAAV 234
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VA + G + V GG L I W V MTGPA VF G++ L+
Sbjct: 235 VAGIRRGVLDSPVKVTTHGGDLTIAWAGGGQPVMMTGPATTVFEGTLDLD 284
>gi|432901400|ref|ZP_20111486.1| diaminopimelate epimerase [Escherichia coli KTE192]
gi|433030759|ref|ZP_20218602.1| diaminopimelate epimerase [Escherichia coli KTE109]
gi|431422044|gb|ELH04239.1| diaminopimelate epimerase [Escherichia coli KTE192]
gi|431539926|gb|ELI15560.1| diaminopimelate epimerase [Escherichia coli KTE109]
Length = 274
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 119/288 (41%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP ANK V+ + + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVP--FRANK----VEKTYIMRAAEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|440289636|ref|YP_007342401.1| diaminopimelate epimerase [Enterobacteriaceae bacterium strain FGI
57]
gi|440049158|gb|AGB80216.1| diaminopimelate epimerase [Enterobacteriaceae bacterium strain FGI
57]
Length = 274
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 164/291 (56%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + V C VSMGNPHCV ++
Sbjct: 119 GEPNFEPSQVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A + GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA
Sbjct: 164 VDDVETAAVESLGPVMESHDRFPERANIGFMQVVKRDHIRLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G + V+LPGG LDI W+ +YMTGPA V+ G + L
Sbjct: 224 AVAVGIQQGLLDEEVRVELPGGRLDIAWRGPGQPLYMTGPAAHVYDGFIHL 274
>gi|399019137|ref|ZP_10721286.1| diaminopimelate epimerase [Herbaspirillum sp. CF444]
gi|398098284|gb|EJL88571.1| diaminopimelate epimerase [Herbaspirillum sp. CF444]
Length = 283
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 161/288 (55%), Gaps = 14/288 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HG GNDF++VD N +T +Q + DR FGIGAD ++ + G D+
Sbjct: 3 IKFTKMHGAGNDFVVVDAINQN-IDLTADQWKFIADRRFGIGADQMLVVEKTQSPGIDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI+N+DG E E CGNG R FARF+++ + L K++ V T +G+I P ++DDG+V VDM
Sbjct: 62 YRIYNADGGEVEQCGNGARAFARFVSD-KGLTTKRAIRVETLSGVIEPTLEDDGRVTVDM 120
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTF-GTKEGQN 253
G PIL VP LS + LDV+G ++ VSMGNPH V E
Sbjct: 121 GAPILTPEQVPFDAAGLSGKTEGVDTLWPLDVNGKTTWISVVSMGNPHAVQIVADTEAAP 180
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ +D GP EHH FP R N F+++++ + +RV+ERGAG TLACGTGACA
Sbjct: 181 VLID-------GPAIEHHQRFPKRVNAGFMQVVNRHNVNLRVFERGAGETLACGTGACAA 233
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VVA + G + V GG L I W V MTGPA VF G +
Sbjct: 234 VVAGIRRGLLDAPVAVQTHGGELVINWAGPGLPVMMTGPAVSVFEGEI 281
>gi|344915361|ref|NP_709616.3| diaminopimelate epimerase [Shigella flexneri 2a str. 301]
gi|384545415|ref|YP_005729479.1| diaminopimelate epimerase [Shigella flexneri 2002017]
gi|24054374|gb|AAN45323.1| diaminopimelate epimerase [Shigella flexneri 2a str. 301]
gi|30043155|gb|AAP18877.1| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T]
gi|281603202|gb|ADA76186.1| Diaminopimelate epimerase [Shigella flexneri 2002017]
Length = 275
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 163/289 (56%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MMQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+
Sbjct: 60 HYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 MGEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVD 166
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 DVDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAV 226
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G + V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 AVGIQQGLLDEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275
>gi|420338419|ref|ZP_14839974.1| diaminopimelate epimerase [Shigella flexneri K-315]
gi|391258299|gb|EIQ17403.1| diaminopimelate epimerase [Shigella flexneri K-315]
Length = 274
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 163/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G + V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEKVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|440737386|ref|ZP_20916952.1| diaminopimelate epimerase [Pseudomonas fluorescens BRIP34879]
gi|447918997|ref|YP_007399565.1| diaminopimelate epimerase [Pseudomonas poae RE*1-1-14]
gi|440382088|gb|ELQ18599.1| diaminopimelate epimerase [Pseudomonas fluorescens BRIP34879]
gi|445202860|gb|AGE28069.1| diaminopimelate epimerase [Pseudomonas poae RE*1-1-14]
Length = 276
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPSNPEVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG+E E CGNG RCFARF+ + + L K+ V T G+I +I++DG++ V+
Sbjct: 61 RYRIFNADGTEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKGGVIELDIRNDGQISVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P D LDVDG + VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFQ----ADVQAASYPLDVDGHSVEIAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ +N A E+GPK EHH FPAR N F+++I S+ ++RVWERG G T ACGTGACA
Sbjct: 167 NDINNAPVHELGPKIEHHPRFPARVNVGFMQVIDRSRAQLRVWERGVGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVLMTGPASRVYEGQVRL 276
>gi|212710175|ref|ZP_03318303.1| hypothetical protein PROVALCAL_01229 [Providencia alcalifaciens DSM
30120]
gi|212687174|gb|EEB46702.1| hypothetical protein PROVALCAL_01229 [Providencia alcalifaciens DSM
30120]
Length = 278
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/290 (41%), Positives = 162/290 (55%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P D+
Sbjct: 5 LQFSKMHGLGNDFMVVDGV-TQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDFH 63
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T +G + I ++ V V+M
Sbjct: 64 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKQKIKVSTQSGRMTLTINENDDVCVNM 122
Query: 198 GEPILKASDVP-TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
GEP + +VP ++ A K + E V VSMGNPHCV ++V
Sbjct: 123 GEPDFEPQNVPFRAVKAEKTYIIRAQERTV-----FAGVVSMGNPHCV---------VQV 168
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + AE+ GP E H FP R N F+E++S +++RV+ERGAG T ACG+GACA
Sbjct: 169 DNVQTAEVEVLGPALESHERFPERANIGFMEVVSADYIRLRVYERGAGETQACGSGACAA 228
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V V +G R VDLPGG LDI W + +YMTGPA V+ G + +
Sbjct: 229 VAVGVGQGLLANRVRVDLPGGSLDISWDGPGSPLYMTGPATHVYDGVIQI 278
>gi|146280905|ref|YP_001171058.1| diaminopimelate epimerase [Pseudomonas stutzeri A1501]
gi|166225745|sp|A4VGW5.1|DAPF_PSEU5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|145569110|gb|ABP78216.1| diaminopimelate epimerase [Pseudomonas stutzeri A1501]
Length = 276
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 127/290 (43%), Positives = 168/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ G+G D ++ P N D+
Sbjct: 2 LLRFTKMHGLGNDFMVID-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I +I+ DG+++VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVVD-KRLTVKRKIKVETKGGIIELDIRPDGQIRVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L VP + ++ + L+VDG + + SMGNPH V L+V
Sbjct: 120 MGPPRL----VPAEIPFQAEREALSYSLEVDGQQVELAAASMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A E+GPK EHH FP R N F++++ ++RVWERGAG T ACGTGACA
Sbjct: 167 DSVERAPVHELGPKIEHHPRFPQRVNVGFLQVVDRRHARLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + ++LPGG L IEW V MTGPA VF G V L
Sbjct: 227 AVAAIRQGWMDSPVQIELPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276
>gi|110807500|ref|YP_691020.1| diaminopimelate epimerase [Shigella flexneri 5 str. 8401]
gi|161486405|ref|NP_839066.2| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T]
gi|194434026|ref|ZP_03066296.1| diaminopimelate epimerase [Shigella dysenteriae 1012]
gi|415859132|ref|ZP_11533457.1| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T]
gi|417675029|ref|ZP_12324458.1| diaminopimelate epimerase [Shigella dysenteriae 155-74]
gi|417704441|ref|ZP_12353537.1| diaminopimelate epimerase [Shigella flexneri K-218]
gi|417709665|ref|ZP_12358682.1| diaminopimelate epimerase [Shigella flexneri VA-6]
gi|417719559|ref|ZP_12368440.1| diaminopimelate epimerase [Shigella flexneri K-227]
gi|417722330|ref|ZP_12371156.1| diaminopimelate epimerase [Shigella flexneri K-304]
gi|417730609|ref|ZP_12379293.1| diaminopimelate epimerase [Shigella flexneri K-671]
gi|417735763|ref|ZP_12384400.1| diaminopimelate epimerase [Shigella flexneri 2747-71]
gi|417740486|ref|ZP_12389053.1| diaminopimelate epimerase [Shigella flexneri 4343-70]
gi|417745537|ref|ZP_12394055.1| diaminopimelate epimerase [Shigella flexneri 2930-71]
gi|417830008|ref|ZP_12476547.1| diaminopimelate epimerase [Shigella flexneri J1713]
gi|418259380|ref|ZP_12882274.1| diaminopimelate epimerase [Shigella flexneri 6603-63]
gi|420322661|ref|ZP_14824480.1| diaminopimelate epimerase [Shigella flexneri 2850-71]
gi|420333562|ref|ZP_14835198.1| diaminopimelate epimerase [Shigella flexneri K-1770]
gi|420349670|ref|ZP_14851043.1| diaminopimelate epimerase [Shigella boydii 965-58]
gi|424839881|ref|ZP_18264518.1| diaminopimelate epimerase [Shigella flexneri 5a str. M90T]
gi|122366275|sp|Q0SZ00.1|DAPF_SHIF8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|110617048|gb|ABF05715.1| diaminopimelate epimerase [Shigella flexneri 5 str. 8401]
gi|194417684|gb|EDX33783.1| diaminopimelate epimerase [Shigella dysenteriae 1012]
gi|313647149|gb|EFS11604.1| diaminopimelate epimerase [Shigella flexneri 2a str. 2457T]
gi|332085006|gb|EGI90188.1| diaminopimelate epimerase [Shigella dysenteriae 155-74]
gi|332750961|gb|EGJ81366.1| diaminopimelate epimerase [Shigella flexneri 4343-70]
gi|332751051|gb|EGJ81455.1| diaminopimelate epimerase [Shigella flexneri K-671]
gi|332751943|gb|EGJ82338.1| diaminopimelate epimerase [Shigella flexneri 2747-71]
gi|332764347|gb|EGJ94582.1| diaminopimelate epimerase [Shigella flexneri 2930-71]
gi|332996987|gb|EGK16605.1| diaminopimelate epimerase [Shigella flexneri VA-6]
gi|332997943|gb|EGK17550.1| diaminopimelate epimerase [Shigella flexneri K-218]
gi|333013787|gb|EGK33150.1| diaminopimelate epimerase [Shigella flexneri K-227]
gi|333019510|gb|EGK38791.1| diaminopimelate epimerase [Shigella flexneri K-304]
gi|335573461|gb|EGM59816.1| diaminopimelate epimerase [Shigella flexneri J1713]
gi|383468933|gb|EID63954.1| diaminopimelate epimerase [Shigella flexneri 5a str. M90T]
gi|391244937|gb|EIQ04213.1| diaminopimelate epimerase [Shigella flexneri 2850-71]
gi|391245178|gb|EIQ04452.1| diaminopimelate epimerase [Shigella flexneri K-1770]
gi|391265581|gb|EIQ24549.1| diaminopimelate epimerase [Shigella boydii 965-58]
gi|397894378|gb|EJL10821.1| diaminopimelate epimerase [Shigella flexneri 6603-63]
Length = 274
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 163/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G + V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLDEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|345301398|ref|YP_004830756.1| diaminopimelate epimerase [Enterobacter asburiae LF7a]
gi|345095335|gb|AEN66971.1| Diaminopimelate epimerase [Enterobacter asburiae LF7a]
Length = 274
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G ++ + DD V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMILSVTDDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + V C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCVI------QVDN 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGISQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 274
>gi|416288195|ref|ZP_11649131.1| Diaminopimelate epimerase [Shigella boydii ATCC 9905]
gi|320178100|gb|EFW53080.1| Diaminopimelate epimerase [Shigella boydii ATCC 9905]
Length = 274
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 163/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERVNIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G + V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLDEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|445062032|ref|ZP_21374479.1| diaminopimelate epimerase [Brachyspira hampsonii 30599]
gi|444506589|gb|ELV06904.1| diaminopimelate epimerase [Brachyspira hampsonii 30599]
Length = 279
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/293 (39%), Positives = 171/293 (58%), Gaps = 24/293 (8%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAK----LCDRNFGIGADGVIFAMPGVNGT 134
L F K HG+GND+I VD + + TPE A+K L +R++ IGADG+I MP +
Sbjct: 3 LSFTKMHGIGNDYIYVD---CFKEKFTPEDASKYSPILSNRHYSIGADGIILIMPS-DKA 58
Query: 135 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE--IQDD-- 190
D MR+FN+DGSE EMCGNG+RC A+++ + + ++ + T G++ E I++D
Sbjct: 59 DAKMRMFNADGSESEMCGNGIRCVAKYVYD-KGISKNNPLKIETLRGILDAELFIKNDEV 117
Query: 191 GKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKE 250
KV+++M PI + +PT++ N ++ + +G + T VSMGNPH V F
Sbjct: 118 DKVEINMSSPIFEGLKIPTTIDKN---PIIDEHITFNGKTYYFTAVSMGNPHAVIFIDD- 173
Query: 251 GQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
+D L++ IG E++S+FP RTN EFVEII+ ++K R WERG+G TLACGTGA
Sbjct: 174 -----IDNLDINSIGSYIENNSIFPNRTNVEFVEIINRGEVKQRTWERGSGETLACGTGA 228
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
AV A + + L GG L + + E+N V+M G A F G V+L
Sbjct: 229 SAVCAAGFISKRTDSIILNHLLGGDLILRY--ENNTVFMKGEARYSFEGIVIL 279
>gi|399007664|ref|ZP_10710166.1| diaminopimelate epimerase [Pseudomonas sp. GM17]
gi|398119436|gb|EJM09125.1| diaminopimelate epimerase [Pseudomonas sp. GM17]
Length = 276
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DRN G+G D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRNTGVGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I ++++DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTTKRQIRVETKSGIIELDVRNDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +P A + +++VDG + VSMGNPH V L+V
Sbjct: 120 MGAPRLVPEQIPFVAPAQ----ALSYQVEVDGQTVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ +N A E+GPK EHH FPAR N F+++I + ++RVWERGAG T ACGTGACA
Sbjct: 167 NDINSAPVHELGPKIEHHPRFPARVNVGFIQVIDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVKMTGPAVRVYEGQVRL 276
>gi|289672834|ref|ZP_06493724.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae FF5]
gi|443640907|ref|ZP_21124757.1| Diaminopimelate epimerase [Pseudomonas syringae pv. syringae B64]
gi|443280924|gb|ELS39929.1| Diaminopimelate epimerase [Pseudomonas syringae pv. syringae B64]
Length = 276
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 168/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKSGIIELDIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P VP + + + +DVDG + VSMGNPH V L+V
Sbjct: 120 MGPPRF----VPEEIPFEAAEQAISYTVDVDGQNIEMAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A E+GPK EHH FPAR N F+ ++ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINNAPVHELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276
>gi|421498413|ref|ZP_15945524.1| diaminopimelate epimerase [Aeromonas media WS]
gi|407182574|gb|EKE56520.1| diaminopimelate epimerase [Aeromonas media WS]
Length = 269
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/282 (41%), Positives = 160/282 (56%), Gaps = 17/282 (6%)
Query: 85 HGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNS 143
HGLGNDF++VD + + + + KL DR+FGIG D ++ P + D+ RIFN+
Sbjct: 2 HGLGNDFMVVDG-VTQKVFFSNDVIKKLADRHFGIGFDQLLLVEPPYDPELDFHYRIFNA 60
Query: 144 DGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILK 203
DGSE E CGNG RCFARF+ L+ L + V T G I +++ + +V V+MG P +
Sbjct: 61 DGSEVEQCGNGARCFARFV-RLKGLVNRDRIAVSTARGRITLQLEGENQVTVNMGVPQFE 119
Query: 204 ASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLKVDKLNL 261
+P + +++++ V C VSMGNPHCV + V +
Sbjct: 120 PGKIPFRAQKAEKTYLLRAQ------DHTVMCGAVSMGNPHCVI------EVPSVADAPV 167
Query: 262 AEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEG 321
+GP E H FP R N F+E++S S++K+RV+ERG G TLACGTGACA VV + +G
Sbjct: 168 ETLGPIMERHERFPERVNVGFMEMVSASEIKLRVFERGVGETLACGTGACAAVVIGISQG 227
Query: 322 HAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
R TV LPGG L I WK VYMTGPAE VF G + L
Sbjct: 228 KLRERVTVTLPGGKLTIAWKGPGQPVYMTGPAEHVFDGQIEL 269
>gi|395495583|ref|ZP_10427162.1| diaminopimelate epimerase [Pseudomonas sp. PAMC 25886]
Length = 276
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 171/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A DR+ G+G D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKLWGDRHTGVGFDQLLLVEAPSNPEVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKSGIIELDIRSDGQIGVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P + + +DVDG N+ VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFQAP----EQALSYPVDVDGKTVNLAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A E+GPK E+H FPAR N F+++I S+ ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINSAPVHELGPKIENHPRFPARVNVGFLQVIDRSRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVKMTGPATRVYEGQVRL 276
>gi|420254448|ref|ZP_14757449.1| diaminopimelate epimerase [Burkholderia sp. BT03]
gi|398049055|gb|EJL41506.1| diaminopimelate epimerase [Burkholderia sp. BT03]
Length = 286
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/291 (41%), Positives = 164/291 (56%), Gaps = 15/291 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HG GNDF+++D T+P +T Q L +R+FG+GAD + + P V G D+
Sbjct: 3 LKFTKMHGAGNDFVVLDG--YTQPLNLTEAQVRALANRHFGVGADQLLVVEKPSVEGVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN DG E E CGNG RCF +F+ + L KQS V G+I +Q +G+V VD
Sbjct: 61 RYRIFNCDGGEVEHCGNGARCFVKFVRDTR-LTDKQSVRVQVQKGVITLTMQANGEVVVD 119
Query: 197 MGEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
MG P+ + + VP + L A + + LDV+G V+ VSMGNPH V
Sbjct: 120 MGAPVFEPAQVPFDASGLDARGEGNDTLYPLDVNGATRWVSVVSMGNPHAVQIVDD---- 175
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V+ + GP E+H FP R N F++I+S S++K+RV+ERGAG TLACGTGACA
Sbjct: 176 --VEAFPVLVDGPVIENHPRFPQRVNAGFMQIVSRSEIKLRVYERGAGETLACGTGACAA 233
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWK-EEDNHVYMTGPAEVVFYGSVLL 363
V A + G + V GG L I W + ++ + M GPA VF G + L
Sbjct: 234 VAAGIRRGLLDAPVKVHTHGGTLTITWDGKSESALMMAGPAATVFEGEIEL 284
>gi|398992576|ref|ZP_10695540.1| diaminopimelate epimerase [Pseudomonas sp. GM21]
gi|398136585|gb|EJM25666.1| diaminopimelate epimerase [Pseudomonas sp. GM21]
Length = 276
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +++ DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKSGIIELDVRSDGQISVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P + + +DVDG + VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFVAP----EQALSYPVDVDGTSVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I S+ ++RVWERGAG T ACGTGACA
Sbjct: 167 SDINNAPVHELGPKIEHHPRFPARVNVGFLQVIDRSRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276
>gi|422631385|ref|ZP_16696572.1| diaminopimelate epimerase [Pseudomonas syringae pv. pisi str.
1704B]
gi|330941150|gb|EGH44029.1| diaminopimelate epimerase [Pseudomonas syringae pv. pisi str.
1704B]
Length = 276
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 168/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKSGIIELDIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P VP + + + +DVDG + VSMGNPH V L+V
Sbjct: 120 MGPPRF----VPEEIPFEAAEQAISYTVDVDGQNIEMAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A E+GPK EHH FPAR N F+ ++ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINNAPVHELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWLDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276
>gi|306815152|ref|ZP_07449305.1| diaminopimelate epimerase [Escherichia coli NC101]
gi|386621482|ref|YP_006141062.1| diaminopimelate epimerase [Escherichia coli NA114]
gi|432383706|ref|ZP_19626630.1| diaminopimelate epimerase [Escherichia coli KTE15]
gi|432389614|ref|ZP_19632492.1| diaminopimelate epimerase [Escherichia coli KTE16]
gi|432399759|ref|ZP_19642532.1| diaminopimelate epimerase [Escherichia coli KTE25]
gi|432408882|ref|ZP_19651583.1| diaminopimelate epimerase [Escherichia coli KTE28]
gi|432424213|ref|ZP_19666749.1| diaminopimelate epimerase [Escherichia coli KTE178]
gi|432434035|ref|ZP_19676456.1| diaminopimelate epimerase [Escherichia coli KTE187]
gi|432516198|ref|ZP_19753412.1| diaminopimelate epimerase [Escherichia coli KTE224]
gi|432561076|ref|ZP_19797728.1| diaminopimelate epimerase [Escherichia coli KTE49]
gi|432613812|ref|ZP_19849968.1| diaminopimelate epimerase [Escherichia coli KTE72]
gi|432648480|ref|ZP_19884264.1| diaminopimelate epimerase [Escherichia coli KTE86]
gi|432658045|ref|ZP_19893741.1| diaminopimelate epimerase [Escherichia coli KTE93]
gi|432701324|ref|ZP_19936467.1| diaminopimelate epimerase [Escherichia coli KTE169]
gi|432708203|ref|ZP_19943277.1| diaminopimelate epimerase [Escherichia coli KTE6]
gi|432725277|ref|ZP_19960190.1| diaminopimelate epimerase [Escherichia coli KTE17]
gi|432729886|ref|ZP_19964758.1| diaminopimelate epimerase [Escherichia coli KTE18]
gi|432743575|ref|ZP_19978288.1| diaminopimelate epimerase [Escherichia coli KTE23]
gi|432747783|ref|ZP_19982444.1| diaminopimelate epimerase [Escherichia coli KTE43]
gi|432847030|ref|ZP_20079541.1| diaminopimelate epimerase [Escherichia coli KTE141]
gi|432907632|ref|ZP_20116015.1| diaminopimelate epimerase [Escherichia coli KTE194]
gi|432940628|ref|ZP_20138529.1| diaminopimelate epimerase [Escherichia coli KTE183]
gi|432974082|ref|ZP_20162924.1| diaminopimelate epimerase [Escherichia coli KTE207]
gi|432987655|ref|ZP_20176365.1| diaminopimelate epimerase [Escherichia coli KTE215]
gi|432988306|ref|ZP_20176985.1| diaminopimelate epimerase [Escherichia coli KTE217]
gi|433040826|ref|ZP_20228410.1| diaminopimelate epimerase [Escherichia coli KTE113]
gi|433084736|ref|ZP_20271180.1| diaminopimelate epimerase [Escherichia coli KTE133]
gi|433103407|ref|ZP_20289475.1| diaminopimelate epimerase [Escherichia coli KTE145]
gi|433113087|ref|ZP_20298934.1| diaminopimelate epimerase [Escherichia coli KTE150]
gi|433146446|ref|ZP_20331575.1| diaminopimelate epimerase [Escherichia coli KTE168]
gi|433190615|ref|ZP_20374700.1| diaminopimelate epimerase [Escherichia coli KTE88]
gi|433209960|ref|ZP_20393621.1| diaminopimelate epimerase [Escherichia coli KTE97]
gi|305851521|gb|EFM51975.1| diaminopimelate epimerase [Escherichia coli NC101]
gi|333971983|gb|AEG38788.1| Diaminopimelate epimerase [Escherichia coli NA114]
gi|430902990|gb|ELC24735.1| diaminopimelate epimerase [Escherichia coli KTE16]
gi|430903094|gb|ELC24838.1| diaminopimelate epimerase [Escherichia coli KTE15]
gi|430912921|gb|ELC34093.1| diaminopimelate epimerase [Escherichia coli KTE25]
gi|430925923|gb|ELC46519.1| diaminopimelate epimerase [Escherichia coli KTE28]
gi|430941436|gb|ELC61583.1| diaminopimelate epimerase [Escherichia coli KTE178]
gi|430949876|gb|ELC69271.1| diaminopimelate epimerase [Escherichia coli KTE187]
gi|431037908|gb|ELD48878.1| diaminopimelate epimerase [Escherichia coli KTE224]
gi|431088272|gb|ELD94168.1| diaminopimelate epimerase [Escherichia coli KTE49]
gi|431146049|gb|ELE47648.1| diaminopimelate epimerase [Escherichia coli KTE72]
gi|431177490|gb|ELE77414.1| diaminopimelate epimerase [Escherichia coli KTE86]
gi|431188156|gb|ELE87655.1| diaminopimelate epimerase [Escherichia coli KTE93]
gi|431239703|gb|ELF34175.1| diaminopimelate epimerase [Escherichia coli KTE169]
gi|431254647|gb|ELF47915.1| diaminopimelate epimerase [Escherichia coli KTE6]
gi|431262496|gb|ELF54486.1| diaminopimelate epimerase [Escherichia coli KTE17]
gi|431270656|gb|ELF61818.1| diaminopimelate epimerase [Escherichia coli KTE18]
gi|431280866|gb|ELF71775.1| diaminopimelate epimerase [Escherichia coli KTE23]
gi|431289683|gb|ELF80424.1| diaminopimelate epimerase [Escherichia coli KTE43]
gi|431392072|gb|ELG75675.1| diaminopimelate epimerase [Escherichia coli KTE141]
gi|431427127|gb|ELH09170.1| diaminopimelate epimerase [Escherichia coli KTE194]
gi|431459678|gb|ELH39970.1| diaminopimelate epimerase [Escherichia coli KTE183]
gi|431478386|gb|ELH58134.1| diaminopimelate epimerase [Escherichia coli KTE207]
gi|431493828|gb|ELH73420.1| diaminopimelate epimerase [Escherichia coli KTE215]
gi|431502019|gb|ELH80912.1| diaminopimelate epimerase [Escherichia coli KTE217]
gi|431547909|gb|ELI22202.1| diaminopimelate epimerase [Escherichia coli KTE113]
gi|431597322|gb|ELI67229.1| diaminopimelate epimerase [Escherichia coli KTE133]
gi|431615738|gb|ELI84860.1| diaminopimelate epimerase [Escherichia coli KTE145]
gi|431624576|gb|ELI93192.1| diaminopimelate epimerase [Escherichia coli KTE150]
gi|431657086|gb|ELJ24054.1| diaminopimelate epimerase [Escherichia coli KTE168]
gi|431701572|gb|ELJ66487.1| diaminopimelate epimerase [Escherichia coli KTE88]
gi|431727904|gb|ELJ91634.1| diaminopimelate epimerase [Escherichia coli KTE97]
Length = 274
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|300705469|ref|YP_003747072.1| diaminopimelate epimerase [Ralstonia solanacearum CFBP2957]
gi|299073133|emb|CBJ44491.1| diaminopimelate epimerase [Ralstonia solanacearum CFBP2957]
Length = 292
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 158/290 (54%), Gaps = 12/290 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
LHF K HG GNDF+++D T TPEQ + DR+FG+GAD ++ D+
Sbjct: 3 LHFTKMHGAGNDFVVLDG-IETPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L K++ V G+ +Q DG+V VDM
Sbjct: 62 YRIFNHDGGEVEHCGNGARCFVKFVTD-RGLTDKRTIRVEVMHGIATLTMQPDGQVTVDM 120
Query: 198 GEPILKASD---VPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ +A+ VP L + + L V+G ++ VSMGNPH V
Sbjct: 121 GAPVFEAARLPFVPDGLPTRVEGRDAQHALQVNGRTAWLSTVSMGNPHAVQVVDD----- 175
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ + E GP E H+VFP R N F+EI+ +++RV+ERGAG TLACGTGACA V
Sbjct: 176 -TEAFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAV 234
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VA + G + V GG L I W E V MTGPA VF G++ L+
Sbjct: 235 VAGIRRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDLD 284
>gi|421618338|ref|ZP_16059315.1| diaminopimelate epimerase [Pseudomonas stutzeri KOS6]
gi|409779669|gb|EKN59322.1| diaminopimelate epimerase [Pseudomonas stutzeri KOS6]
Length = 276
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 168/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ G+G D ++ P N D+
Sbjct: 2 LLRFTKMHGLGNDFMVID-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I +I+ DG+++VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVVD-KRLTVKRRIKVETKGGIIELDIRPDGQIRVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L VP + DQ + L+VDG + + VSMGNPH V L+V
Sbjct: 120 MGPPRL----VPAEIPFQADQEALSYSLEVDGQRVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A E+G K EHH F R N F++I+ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DNVEQAPVHELGAKIEHHPRFAQRVNVGFLQIVDRAHARLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + ++LPGG L IEW V MTGPA VF G V L
Sbjct: 227 AVAAIRQGWMDSPLQIELPGGRLSIEWAGPGQPVMMTGPAVRVFEGQVRL 276
>gi|386037431|ref|YP_005957344.1| diaminopimelate epimerase [Klebsiella pneumoniae KCTC 2242]
gi|339764559|gb|AEK00780.1| diaminopimelate epimerase [Klebsiella pneumoniae KCTC 2242]
Length = 274
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + V C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSQVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ S +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK ++MTGPA V+ G + L
Sbjct: 227 VGIQQGLLAETVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIYL 274
>gi|77461720|ref|YP_351227.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf0-1]
gi|123602830|sp|Q3K4R8.1|DAPF_PSEPF RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|77385723|gb|ABA77236.1| diaminopimelate epimerase [Pseudomonas fluorescens Pf0-1]
Length = 276
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKMWGDRHTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I ++++DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKGGIIELDVRNDGQIGVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P + + ++DVDG ++ VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFQAP----EQALSYQVDVDGTPVDLAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I + ++RVWERGAG T ACGTGACA
Sbjct: 167 SDINTAPVHELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVLMTGPAVRVYEGQVRL 276
>gi|414342696|ref|YP_006984217.1| diaminopimelate epimerase [Gluconobacter oxydans H24]
gi|411028031|gb|AFW01286.1| diaminopimelate epimerase [Gluconobacter oxydans H24]
gi|453329118|dbj|GAC88728.1| diaminopimelate epimerase [Gluconobacter thailandicus NBRC 3255]
Length = 257
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/284 (40%), Positives = 154/284 (54%), Gaps = 31/284 (10%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADG-VIFAMPGVNGTDYT 137
L F K HGLGNDFI++D R T P + ++ LCDR FG+G D V+ + P +G D
Sbjct: 3 LSFTKMHGLGNDFIIIDGRQ-TAPALDTDKIRHLCDRRFGVGCDQLVVLSAPTADGADVL 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
+R FN+DGSE CGN RC A + + + T AGL++ QD + V+M
Sbjct: 62 VRFFNADGSESGACGNASRCVATLVG--------GNPVLQTSAGLLLTS-QDGDLITVNM 112
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G+P D+P + + + + SMGNPH FG D
Sbjct: 113 GQPRFGWQDIPLARECDTLHLPIH----------DAAACSMGNPHATVFG---------D 153
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++GP EH +FP R N F +II+P+ +++RVWERGAG TLACG+GACA VV A
Sbjct: 154 VSRAEDLGPSLEHSPLFPQRANIGFADIITPTHMRLRVWERGAGLTLACGSGACAAVVNA 213
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V G AER C V + GG L I W +++ V MTGPA VF+G +
Sbjct: 214 VRRGLAERTCVVTMDGGDLRITW-QDNGDVLMTGPATTVFHGEL 256
>gi|395233117|ref|ZP_10411362.1| diaminopimelate epimerase [Enterobacter sp. Ag1]
gi|394732464|gb|EJF32137.1| diaminopimelate epimerase [Enterobacter sp. Ag1]
Length = 274
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 164/291 (56%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVYFSPELIRRLADRHLGVGFDQLLIVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKREIRVSTANGRMVLSVTEDEMVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP S VP + + ++++ + + C VSMGNPHCV ++
Sbjct: 119 GEPNFDPSQVPFRANKAEKTYIMRA------AEQTIMCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A + GP E H FP R N F++++S +++RV+ERGAG T ACG+GAC
Sbjct: 164 VDDIETAAVESLGPVMESHERFPERANIGFMQVVSREHIRLRVYERGAGETQACGSGACG 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G + V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 224 AVAVGIQQGLLAEQVRVELPGGRLDIAWKGPGSPLYMTGPAAHVYDGFIHL 274
>gi|423386447|ref|ZP_17363702.1| diaminopimelate epimerase [Bacillus cereus BAG1X1-2]
gi|401632414|gb|EJS50201.1| diaminopimelate epimerase [Bacillus cereus BAG1X1-2]
Length = 288
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 165/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L + FT+ T AG++ E+ +DGKV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFTIETLAGIVTAEVTVEDGKVIL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L ++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTREEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVED--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE N V M GPAEV+ G
Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
>gi|398887671|ref|ZP_10642330.1| diaminopimelate epimerase [Pseudomonas sp. GM55]
gi|398192139|gb|EJM79308.1| diaminopimelate epimerase [Pseudomonas sp. GM55]
Length = 276
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 172/290 (59%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I ++++DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRVIRVETKSGIIELDVRNDGQISVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P + ++DVDG ++ VSMGNPH V ++V
Sbjct: 120 MGAPRLVPADIPFQAP----EQAKSYQVDVDGTPVDLAAVSMGNPHAV---------VRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I S+ ++RVWERGAG T ACGTGACA
Sbjct: 167 SDINNAPVHELGPKIEHHPRFPARVNVGFLQVIDRSRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276
>gi|317477253|ref|ZP_07936490.1| diaminopimelate epimerase [Bacteroides eggerthii 1_2_48FAA]
gi|316906565|gb|EFV28282.1| diaminopimelate epimerase [Bacteroides eggerthii 1_2_48FAA]
Length = 283
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 171/293 (58%), Gaps = 21/293 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAK-LCDRNFGIGADGVIFAMPGVNG-TD 135
+ F K HG GND+I VD + P PE+ +K + GIG+DG++ + G +G D
Sbjct: 4 IIKFTKMHGAGNDYIYVDT--TRYPIGNPEKLSKEWSALHTGIGSDGLV--LIGRSGKAD 59
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKVK 194
++MRIFN+DGSE +MCGN RC +++ + + L K T+ T +G+ ++ +D KV
Sbjct: 60 FSMRIFNADGSEAKMCGNASRCIGKYLYDYK-LTSKTEITLDTLSGIKTLKLHVEDNKVD 118
Query: 195 ---VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
VDMG P + PT + + + + +++DGV++ T VSMGNPH V F
Sbjct: 119 TVTVDMGIPACE----PTCYDGKEGKPMKEHPIEIDGVRYTGTTVSMGNPHLVIFVND-- 172
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+ K++L IGPK E+H FP R N EF +++ +++MRVWERG+G T ACGTGAC
Sbjct: 173 ----ITKVDLPVIGPKLENHPFFPGRINVEFAQVLGEGRIRMRVWERGSGITQACGTGAC 228
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
A VAA L G + R+ TV + GG L IEW HV+MTG A VF G N
Sbjct: 229 ATAVAAFLTGRSGRKATVIMDGGALTIEWDVATGHVFMTGNAIRVFDGEAETN 281
>gi|423363474|ref|ZP_17340972.1| diaminopimelate epimerase [Bacillus cereus VD022]
gi|401075293|gb|EJP83676.1| diaminopimelate epimerase [Bacillus cereus VD022]
Length = 288
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 165/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLVLVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L + FT+ T AG++ E+ +DGKV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFTIETLAGIVTAEVTVEDGKVIL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L ++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTREEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVED--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE N V M GPAEV+ G
Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
>gi|229020171|ref|ZP_04176945.1| Diaminopimelate epimerase [Bacillus cereus AH1273]
gi|229026398|ref|ZP_04182755.1| Diaminopimelate epimerase [Bacillus cereus AH1272]
gi|423388764|ref|ZP_17365990.1| diaminopimelate epimerase [Bacillus cereus BAG1X1-3]
gi|228734861|gb|EEL85499.1| Diaminopimelate epimerase [Bacillus cereus AH1272]
gi|228741119|gb|EEL91343.1| Diaminopimelate epimerase [Bacillus cereus AH1273]
gi|401642839|gb|EJS60545.1| diaminopimelate epimerase [Bacillus cereus BAG1X1-3]
Length = 288
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 164/289 (56%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIREEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L FT+ T AG++ E+ +D KV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIETLAGIVTAEVTVEDDKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L ++P + D ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTREEIP--MLGEGDTPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE N V M GPAEV+ +G
Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICHG 280
>gi|426412182|ref|YP_007032281.1| diaminopimelate epimerase [Pseudomonas sp. UW4]
gi|426270399|gb|AFY22476.1| diaminopimelate epimerase [Pseudomonas sp. UW4]
Length = 276
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 172/290 (59%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I ++++DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRLIRVETKSGIIELDVRNDGQISVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P + ++DVDG ++ VSMGNPH V ++V
Sbjct: 120 MGAPRLVPADIPFQAP----EQAKSYQVDVDGTPVDLAAVSMGNPHAV---------VRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I S+ ++RVWERGAG T ACGTGACA
Sbjct: 167 SDINNAPVHELGPKIEHHPRFPARVNVGFLQVIDRSRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276
>gi|421138408|ref|ZP_15598472.1| diaminopimelate epimerase [Pseudomonas fluorescens BBc6R8]
gi|404510421|gb|EKA24327.1| diaminopimelate epimerase [Pseudomonas fluorescens BBc6R8]
Length = 276
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 171/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A DR+ G+G D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKLWGDRHTGVGFDQLLLVEAPSNPEVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKSGIIELDIRSDGQIGVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P + + + +DVDG N+ VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFQAT----EQALSYAVDVDGKTVNLAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A E+GPK E+H FPAR N F+++I S+ +RVWERGAG T ACGTGACA
Sbjct: 167 DDINSAPVHELGPKIENHPRFPARVNVGFLQVIDRSRALLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVKMTGPATRVYEGQVRL 276
>gi|302879882|ref|YP_003848446.1| diaminopimelate epimerase [Gallionella capsiferriformans ES-2]
gi|302582671|gb|ADL56682.1| diaminopimelate epimerase [Gallionella capsiferriformans ES-2]
Length = 276
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 115/286 (40%), Positives = 160/286 (55%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGT-DYT 137
L F K HG GNDF+++D + +T EQ L DR+FG+G D ++ + + D+
Sbjct: 3 LKFTKMHGAGNDFVVLDGVRQ-QISLTTEQLRLLADRHFGVGCDQILLVEKAHDASADFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DG E E CGNG RCF RF+ + + L K V T GLI P ++ DG+V V+M
Sbjct: 62 YRIFNADGGEVEQCGNGARCFVRFVHD-QKLTNKAEIVVETHNGLIRPRLEADGRVVVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P+ A+ +P S + V L V V+ VSMGNPH V V+
Sbjct: 121 GAPVFDAARIPFSGGTIE----VMQPLVVADQTLMVSIVSMGNPHAVQVVDD------VE 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ + +GP EHH+ FP R N F++I+ +++RV+ERG+G TL+CGTGACA VV+
Sbjct: 171 RAAVEVLGPLIEHHASFPKRVNAGFMQIMDRQHIRLRVYERGSGETLSCGTGACAAVVSG 230
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ G + +V GG L I W E+ V MTGPA VF G + L
Sbjct: 231 IRRGLLDSPVSVATHGGNLSIAWGGEETPVLMTGPAISVFSGEINL 276
>gi|238018530|ref|ZP_04598956.1| hypothetical protein VEIDISOL_00357 [Veillonella dispar ATCC 17748]
gi|237865001|gb|EEP66291.1| hypothetical protein VEIDISOL_00357 [Veillonella dispar ATCC 17748]
Length = 277
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/283 (41%), Positives = 163/283 (57%), Gaps = 17/283 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ K HGLGNDFIL + T + A +LCDR GIGADG++ +P + D M
Sbjct: 1 MKLTKMHGLGNDFILFADPQGANKDYT-DLAIRLCDRRTGIGADGLVIVVPS-DTCDVRM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKV----K 194
RI NSDGSE EMCGNG+RCFA++ E + K++FT+ T AG++ P + + V
Sbjct: 59 RIINSDGSEAEMCGNGIRCFAKYAYEHGEIT-KETFTIETLAGIMKPTLTIENGVVTLVT 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG+P + DVP ++ +K V+ ++DV+G V+ V +G PH +
Sbjct: 118 VDMGKPFFNSKDVPMNVDMDK---VIDVDIDVNGETVTVSSVLLGVPHTEVYVED----- 169
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ K + GP E H FP+ TN ++E+++ +K+R WERGAGATLACGTG+CA
Sbjct: 170 -ITKAPVTTQGPILEKHDAFPSNTNVNYIEVVNDKHIKVRTWERGAGATLACGTGSCASA 228
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVF 357
V + +G R V+L G L I + ED V MTGPAE VF
Sbjct: 229 VMSFEKGLTGREVDVELYLGTLHISYL-EDGTVLMTGPAEEVF 270
>gi|90414246|ref|ZP_01222226.1| diaminopimelate epimerase [Photobacterium profundum 3TCK]
gi|90324693|gb|EAS41234.1| diaminopimelate epimerase [Photobacterium profundum 3TCK]
Length = 276
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 167/291 (57%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
++F K HGLGNDF++VD + +P+ +L DR+ GIG D ++ P + TD+
Sbjct: 3 INFSKMHGLGNDFMVVDCV-TQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE E CGNG RCFARF+ ++ L K V T AG ++ ++++D +V V+M
Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVW-MKGLTNKYQVAVSTKAGKMLLKLENDNQVTVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
G P + S +P + +++ + + C VSMGNPHCVT
Sbjct: 121 GVPEFEPSKIPFRAKQTEKTYIMRVG------ERTIFCGVVSMGNPHCVTV--------- 165
Query: 256 VDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD L+L +GP E H FP R N F++++S +++K+RV+ERGAG T ACG+GACA
Sbjct: 166 VDDLDLTGVETLGPLIESHERFPERVNAGFMQVVSRNEVKLRVYERGAGETQACGSGACA 225
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V L+G + V LPGG L I W E +YMTGP VF G ++L
Sbjct: 226 AVAVGYLQGLLDENVKVSLPGGDLHISWAGEGKSLYMTGPVAHVFDGQIVL 276
>gi|104784268|ref|YP_610766.1| diaminopimelate epimerase [Pseudomonas entomophila L48]
gi|122401301|sp|Q1I303.1|DAPF_PSEE4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|95113255|emb|CAK17983.1| diaminopimelate epimerase [Pseudomonas entomophila L48]
Length = 276
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 131/290 (45%), Positives = 168/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DRN GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRNTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T G+I ++++DG+V VD
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVETKGGIIELDVRNDGQVCVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P +D+P D+ + L+VDG + VSMGNPH V L+V
Sbjct: 120 MGPPRFVPADIPFI----ADEQALSYPLEVDGQVHQIAAVSMGNPHSV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A E+GPK EHH FP R N F++++ + +RVWERGAG T ACGTGACA
Sbjct: 167 DDVRTAPVHELGPKIEHHPRFPQRVNAGFIQVVDRHRANLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + T+DLPGG L IEW V MTGPA VF G V L
Sbjct: 227 AVAAIAQGWMDSPVTIDLPGGRLSIEWAGPGKPVLMTGPAVRVFEGQVRL 276
>gi|83719190|ref|YP_440730.1| diaminopimelate epimerase [Burkholderia thailandensis E264]
gi|257140621|ref|ZP_05588883.1| diaminopimelate epimerase [Burkholderia thailandensis E264]
gi|123538287|sp|Q2T269.1|DAPF_BURTA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|83653015|gb|ABC37078.1| diaminopimelate epimerase [Burkholderia thailandensis E264]
Length = 289
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 120/292 (41%), Positives = 163/292 (55%), Gaps = 14/292 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D + P +T L DR+FGIGAD ++ P V+G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L K S V G+I +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTDKASVRVEVKHGVITLTMQDNGEVVVDM 121
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + + VP + L ++ + L V+G ++ VSMGNPH V + +
Sbjct: 122 GAPVFEPARVPFDTSGLDGRREGADTLWPLPVNGATRWISVVSMGNPHAVQI-VDDAEAF 180
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V LA+ GP E FP R N F++I+S ++K+RV+ERGAG TLACGTGACA V
Sbjct: 181 PV----LAD-GPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAV 235
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLL 363
A + G + TV GG L I W ++E + M GPA VF G + L
Sbjct: 236 AAGIRRGQLDSPVTVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDL 287
>gi|317046393|ref|YP_004114041.1| diaminopimelate epimerase [Pantoea sp. At-9b]
gi|316948010|gb|ADU67485.1| diaminopimelate epimerase [Pantoea sp. At-9b]
Length = 274
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/286 (40%), Positives = 163/286 (56%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKSDIRVSTQTGRMVLSVTNDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP + VP ANK +++ + V + VSMGNPHCV + +N+K
Sbjct: 119 GEPNFEPQHVP--FRANKAENLYLLRVAEQTVMFG--AVSMGNPHCVI----QVENVKTA 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ +GP E H FP R N F+E+++P +++RV+ERGAG T ACG+GACA V
Sbjct: 171 PVE--TLGPVLESHERFPERVNVGFMEVVNPEHIRLRVYERGAGETQACGSGACAAVACG 228
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G + VDLPGG L I WK ++MTGPA V+ G + L
Sbjct: 229 IQQGILAEKVRVDLPGGTLHIAWKGAGQPLFMTGPATHVYDGFIHL 274
>gi|336402623|ref|ZP_08583354.1| diaminopimelate epimerase [Bacteroides sp. 1_1_30]
gi|335947834|gb|EGN09592.1| diaminopimelate epimerase [Bacteroides sp. 1_1_30]
Length = 271
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 167/293 (56%), Gaps = 40/293 (13%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAA-KLCDRNFGIGADGVIFAMPGV-NGTDY 136
+ F K HG GND+I VD + P PE+ A + + GIG+DG+I + GV + D+
Sbjct: 5 IKFTKMHGAGNDYIYVDT--TRYPIADPEKKAIEWSKFHTGIGSDGLI--LIGVSDKADF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
+MRIFN+DGSE MCGNG RC +++ E L K T+ T +G+ + ++Q +GK
Sbjct: 61 SMRIFNADGSEAMMCGNGSRCVGKYVYEY-GLTDKTEITLDTLSGIKILKLQVEGKTVST 119
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVK---WNVTCVSMGNPHCVTFGTK 249
V VDMG P + ++D K + T VSMGNPH VTF
Sbjct: 120 VTVDMGNP--------------------QETGEIDWKKKYPFQSTKVSMGNPHLVTFVDD 159
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
+ ++NL EIGP+ E+H +FP RTN EF +I+ ++MRVWERG+G T ACGTG
Sbjct: 160 ------ITRINLPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTG 213
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
ACA VAA + G A R+ V + GG + IEW E H+ MTGPA VF G ++
Sbjct: 214 ACATAVAAFINGLAGRKSDVIMDGGTVTIEWDETSGHILMTGPATKVFDGEIV 266
>gi|167579403|ref|ZP_02372277.1| diaminopimelate epimerase [Burkholderia thailandensis TXDOH]
Length = 289
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 160/292 (54%), Gaps = 14/292 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D + P +T L DR+FGIGAD ++ P V+G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L K S V G+I +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTDKASVRVEVKHGVITLTMQDNGEVVVDM 121
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + + VP + L ++ + L V+G ++ VSMGNPH V
Sbjct: 122 GAPVFEPARVPFDTSGLGGRREGADTLWPLPVNGATRWISVVSMGNPHAVQIVDD----- 176
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V+ + GP E FP R N F++I+S ++K+RV+ERGAG TLACGTGACA V
Sbjct: 177 -VEAFPVLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAV 235
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLL 363
A + G + TV GG L I W ++E + M GPA VF G + L
Sbjct: 236 AAGIRRGQLDSPVTVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDL 287
>gi|288559411|ref|YP_003422897.1| diaminopimelate epimerase DapF [Methanobrevibacter ruminantium M1]
gi|288542121|gb|ADC46005.1| diaminopimelate epimerase DapF [Methanobrevibacter ruminantium M1]
Length = 287
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 171/291 (58%), Gaps = 19/291 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT--PEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
L F K HG+GNDF ++D + + PE +LC RNFG+G DGV+F +P + D
Sbjct: 7 LKFSKMHGIGNDFPIIDESKGEQIKEADKPEACRQLCHRNFGVGGDGVLFVVPS-DVADI 65
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGK--- 192
R+FN DGSE EMCGNG+RCF F+ + K++ TV T +G+ EI +DG+
Sbjct: 66 GYRMFNPDGSEAEMCGNGIRCFGDFVYR-NKIVEKETMTVETKSGIKTIEITVEDGEPVL 124
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
KV+MG+ K ++P + A+ D+ V +LDV + TCV++GNPH + F
Sbjct: 125 FKVNMGKSTFKVPEIP--MIADTDE-FVDGDLDVIDTTFKATCVNVGNPHAILF------ 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD +++ + GP E H VFP + N FVE++S ++ KMR WERGAG TLACGTGA +
Sbjct: 176 VDNVDDIDIDKYGPAIECHEVFPEKINVHFVEVLSKNEGKMRTWERGAGVTLACGTGATS 235
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHV--YMTGPAEVVFYGSV 361
+A V G ++ + LPGG L+ E EED + +M GPA +VF +
Sbjct: 236 TALAGVKLGLFDKNVLLHLPGGDLEFEVYEEDGELGAFMKGPAALVFNAEI 286
>gi|54310575|ref|YP_131595.1| diaminopimelate epimerase [Photobacterium profundum SS9]
gi|81614797|sp|Q6LLN5.1|DAPF_PHOPR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|46915018|emb|CAG21793.1| putative ribulose-phosphate 3-epimerase [Photobacterium profundum
SS9]
Length = 276
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 166/291 (57%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
++F K HGLGNDF++VD + +P +L DR+ GIG D ++ P + TD+
Sbjct: 3 INFSKMHGLGNDFMVVDCV-TQNVFFSPAAIRRLADRHRGIGFDQLLVVEPPYDPETDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE E CGNG RCFARF+ ++ L K V T AG ++ ++++D +V V+M
Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVW-MKGLTNKYQVAVSTKAGKMLLKLENDNQVTVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
G P + S +P + +++ + + C VSMGNPHCVT
Sbjct: 121 GVPEFEPSKIPFRAKQTEKTYIMRVG------ERTIFCGTVSMGNPHCVTV--------- 165
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD L L ++ GP E H FP R N F++++S +++K+RV+ERGAG T ACG+GACA
Sbjct: 166 VDDLELTDVDTLGPLIESHERFPERVNAGFMQVVSRNEVKLRVYERGAGETQACGSGACA 225
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V L+G + V LPGG L I W E +YMTGP VF G ++L
Sbjct: 226 AVAVGYLQGLLDENVKVSLPGGDLHISWAGEGKSLYMTGPVAHVFDGQIVL 276
>gi|332304597|ref|YP_004432448.1| diaminopimelate epimerase [Glaciecola sp. 4H-3-7+YE-5]
gi|410640920|ref|ZP_11351446.1| diaminopimelate epimerase [Glaciecola chathamensis S18K6]
gi|410645569|ref|ZP_11356031.1| diaminopimelate epimerase [Glaciecola agarilytica NO2]
gi|332171926|gb|AEE21180.1| diaminopimelate epimerase [Glaciecola sp. 4H-3-7+YE-5]
gi|410134900|dbj|GAC04430.1| diaminopimelate epimerase [Glaciecola agarilytica NO2]
gi|410139485|dbj|GAC09633.1| diaminopimelate epimerase [Glaciecola chathamensis S18K6]
Length = 276
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 122/290 (42%), Positives = 168/290 (57%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++DN + + E+ A+L DRNFGIG D ++ P + D+
Sbjct: 3 VQFSKMHGLGNDFVVIDNV-TQNVFFSKEKIAQLADRNFGIGFDQLLVVEPPYDPEQDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSE CGNG RCFARF+ +++ L + V T AG IV + DG+V V+M
Sbjct: 62 YRIFNSDGSEVSQCGNGARCFARFV-KMKGLTNRNKIVVSTKAGRIVLYHERDGQVTVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSV-VKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
GEP + S +P L ANK +++ + E D + VSMGNPHCV L V
Sbjct: 121 GEPEFEPSKIP--LKANKQENIYIIRENDH---TFFCGAVSMGNPHCV---------LLV 166
Query: 257 DKL---NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + ++ IG H FP N F++I++ +K+RV+ERG G TLACG+GACA
Sbjct: 167 DDIATTDVEGIGKMLVAHERFPEGANIGFMQILNSGHIKLRVYERGVGETLACGSGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V ++ + TVDLPGG L I W+ + + MTG AE VF G++ L
Sbjct: 227 VAVGQMQKKLNKDVTVDLPGGTLKIRWQGPGSILKMTGTAEHVFDGNITL 276
>gi|330812550|ref|YP_004357012.1| diaminopimelate epimerase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423700045|ref|ZP_17674535.1| diaminopimelate epimerase [Pseudomonas fluorescens Q8r1-96]
gi|6014917|sp|O05322.1|DAPF_PSEFL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|1929095|emb|CAA72944.1| DapF protein [Pseudomonas fluorescens]
gi|327380658|gb|AEA72008.1| diaminopimelate epimerase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|387996955|gb|EIK58285.1| diaminopimelate epimerase [Pseudomonas fluorescens Q8r1-96]
Length = 276
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T +G+I +++ DG++ V+
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKSGIIELDVRSDGQIGVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P A + ++DVDG + VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFQAPAQ----ALSYQVDVDGATVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I + ++RVWERGAG T ACGTGACA
Sbjct: 167 ADINSAPVHELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276
>gi|417125687|ref|ZP_11973648.1| diaminopimelate epimerase [Escherichia coli 97.0246]
gi|386145686|gb|EIG92143.1| diaminopimelate epimerase [Escherichia coli 97.0246]
Length = 274
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDLRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|385786860|ref|YP_005817969.1| diaminopimelate epimerase [Erwinia sp. Ejp617]
gi|310766132|gb|ADP11082.1| diaminopimelate epimerase [Erwinia sp. Ejp617]
Length = 282
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 164/291 (56%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 9 MQFSKMHGLGNDFMVVDAV-TQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFH 67
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K V T +G ++ + D +V V+M
Sbjct: 68 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKSEIRVSTQSGRMILSVTQDERVCVNM 126
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + +P ANK +++ + V+ V C VSMGNPHCV L+
Sbjct: 127 GEPNFEPQQIP--FRANKAENIYL----MRAVEQTVMCGVVSMGNPHCV---------LQ 171
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A + GP E H FP R N F+E++ +++RV+ERGAG T ACG+GACA
Sbjct: 172 VDNVKTAAVETLGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACA 231
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + + + VDLPGG L+I WK + ++MTGPA V+ G + L
Sbjct: 232 AVAVGIQQALLAEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDGFIHL 282
>gi|91213334|ref|YP_543320.1| diaminopimelate epimerase [Escherichia coli UTI89]
gi|117626068|ref|YP_859391.1| diaminopimelate epimerase [Escherichia coli APEC O1]
gi|188492832|ref|ZP_03000102.1| diaminopimelate epimerase [Escherichia coli 53638]
gi|209921287|ref|YP_002295371.1| diaminopimelate epimerase [Escherichia coli SE11]
gi|237702818|ref|ZP_04533299.1| diaminopimelate epimerase [Escherichia sp. 3_2_53FAA]
gi|293417275|ref|ZP_06659900.1| diaminopimelate epimerase [Escherichia coli B185]
gi|300818720|ref|ZP_07098927.1| diaminopimelate epimerase [Escherichia coli MS 107-1]
gi|300823345|ref|ZP_07103476.1| diaminopimelate epimerase [Escherichia coli MS 119-7]
gi|300900641|ref|ZP_07118799.1| diaminopimelate epimerase [Escherichia coli MS 198-1]
gi|300904064|ref|ZP_07121944.1| diaminopimelate epimerase [Escherichia coli MS 84-1]
gi|300921480|ref|ZP_07137828.1| diaminopimelate epimerase [Escherichia coli MS 115-1]
gi|300923313|ref|ZP_07139361.1| diaminopimelate epimerase [Escherichia coli MS 182-1]
gi|300930025|ref|ZP_07145457.1| diaminopimelate epimerase [Escherichia coli MS 187-1]
gi|300939971|ref|ZP_07154599.1| diaminopimelate epimerase [Escherichia coli MS 21-1]
gi|300950426|ref|ZP_07164348.1| diaminopimelate epimerase [Escherichia coli MS 116-1]
gi|300955185|ref|ZP_07167582.1| diaminopimelate epimerase [Escherichia coli MS 175-1]
gi|300979370|ref|ZP_07174528.1| diaminopimelate epimerase [Escherichia coli MS 200-1]
gi|301025746|ref|ZP_07189261.1| diaminopimelate epimerase [Escherichia coli MS 69-1]
gi|301029026|ref|ZP_07192180.1| diaminopimelate epimerase [Escherichia coli MS 196-1]
gi|301303705|ref|ZP_07209826.1| diaminopimelate epimerase [Escherichia coli MS 124-1]
gi|301328429|ref|ZP_07221510.1| diaminopimelate epimerase [Escherichia coli MS 78-1]
gi|301646123|ref|ZP_07246023.1| diaminopimelate epimerase [Escherichia coli MS 146-1]
gi|309796247|ref|ZP_07690657.1| diaminopimelate epimerase [Escherichia coli MS 145-7]
gi|331644542|ref|ZP_08345662.1| diaminopimelate epimerase [Escherichia coli H736]
gi|331649634|ref|ZP_08350716.1| diaminopimelate epimerase [Escherichia coli M605]
gi|331655494|ref|ZP_08356487.1| diaminopimelate epimerase [Escherichia coli M718]
gi|331665459|ref|ZP_08366358.1| diaminopimelate epimerase [Escherichia coli TA143]
gi|331670655|ref|ZP_08371492.1| diaminopimelate epimerase [Escherichia coli TA271]
gi|331675277|ref|ZP_08376028.1| diaminopimelate epimerase [Escherichia coli TA280]
gi|331679919|ref|ZP_08380582.1| diaminopimelate epimerase [Escherichia coli H591]
gi|331685529|ref|ZP_08386113.1| diaminopimelate epimerase [Escherichia coli H299]
gi|332282683|ref|ZP_08395096.1| diaminopimelate epimerase [Shigella sp. D9]
gi|386626704|ref|YP_006146432.1| diaminopimelate epimerase [Escherichia coli O7:K1 str. CE10]
gi|387831701|ref|YP_003351638.1| diaminopimelate epimerase [Escherichia coli SE15]
gi|415865353|ref|ZP_11538215.1| diaminopimelate epimerase [Escherichia coli MS 85-1]
gi|415875425|ref|ZP_11542180.1| diaminopimelate epimerase [Escherichia coli MS 79-10]
gi|416778756|ref|ZP_11876087.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. G5101]
gi|416812747|ref|ZP_11890789.1| diaminopimelate epimerase [Escherichia coli O55:H7 str. 3256-97]
gi|418040294|ref|ZP_12678540.1| diaminopimelate epimerase [Escherichia coli W26]
gi|418960307|ref|ZP_13512198.1| diaminopimelate epimerase [Escherichia coli J53]
gi|419804815|ref|ZP_14329966.1| diaminopimelate epimerase [Escherichia coli AI27]
gi|419937463|ref|ZP_14454359.1| diaminopimelate epimerase [Escherichia coli 576-1]
gi|422355853|ref|ZP_16436557.1| diaminopimelate epimerase [Escherichia coli MS 117-3]
gi|422361467|ref|ZP_16442089.1| diaminopimelate epimerase [Escherichia coli MS 110-3]
gi|422373947|ref|ZP_16454242.1| diaminopimelate epimerase [Escherichia coli MS 60-1]
gi|422381307|ref|ZP_16461475.1| diaminopimelate epimerase [Escherichia coli MS 57-2]
gi|422757528|ref|ZP_16811346.1| diaminopimelate epimerase [Escherichia coli H263]
gi|422764386|ref|ZP_16818136.1| diaminopimelate epimerase [Escherichia coli E1167]
gi|422769212|ref|ZP_16822933.1| diaminopimelate epimerase [Escherichia coli E1520]
gi|422773890|ref|ZP_16827571.1| diaminopimelate epimerase [Escherichia coli E482]
gi|422778567|ref|ZP_16832215.1| diaminopimelate epimerase [Escherichia coli H120]
gi|422784500|ref|ZP_16837280.1| diaminopimelate epimerase [Escherichia coli TW10509]
gi|422789251|ref|ZP_16841982.1| diaminopimelate epimerase [Escherichia coli H489]
gi|422794119|ref|ZP_16846810.1| diaminopimelate epimerase [Escherichia coli TA007]
gi|422808174|ref|ZP_16856600.1| diaminopimelate epimerase [Escherichia fergusonii B253]
gi|424818202|ref|ZP_18243353.1| diaminopimelate epimerase [Escherichia fergusonii ECD227]
gi|427807005|ref|ZP_18974072.1| diaminopimelate epimerase [Escherichia coli chi7122]
gi|427811593|ref|ZP_18978658.1| diaminopimelate epimerase [Escherichia coli]
gi|25294017|pir||C91221 diaminopimelate epimerase [imported] - Escherichia coli (strain
O157:H7, substrain RIMD 0509952)
gi|25294021|pir||F86067 diaminopimelate epimerase [imported] - Escherichia coli (strain
O157:H7, substrain EDL933)
gi|12518677|gb|AAG59002.1|AE005612_5 diaminopimelate epimerase [Escherichia coli O157:H7 str. EDL933]
gi|13364215|dbj|BAB38162.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. Sakai]
gi|73857798|gb|AAZ90505.1| diaminopimelate epimerase [Shigella sonnei Ss046]
gi|81243160|gb|ABB63870.1| diaminopimelate epimerase [Shigella dysenteriae Sd197]
gi|81247571|gb|ABB68279.1| diaminopimelate epimerase [Shigella boydii Sb227]
gi|91074908|gb|ABE09789.1| diaminopimelate epimerase [Escherichia coli UTI89]
gi|115515192|gb|ABJ03267.1| diaminopimelate epimerase [Escherichia coli APEC O1]
gi|188488031|gb|EDU63134.1| diaminopimelate epimerase [Escherichia coli 53638]
gi|209753268|gb|ACI74941.1| hypothetical protein ECs4739 [Escherichia coli]
gi|209753270|gb|ACI74942.1| hypothetical protein ECs4739 [Escherichia coli]
gi|209753272|gb|ACI74943.1| hypothetical protein ECs4739 [Escherichia coli]
gi|209753274|gb|ACI74944.1| hypothetical protein ECs4739 [Escherichia coli]
gi|209753276|gb|ACI74945.1| hypothetical protein ECs4739 [Escherichia coli]
gi|209914546|dbj|BAG79620.1| diaminopimelate epimerase [Escherichia coli SE11]
gi|226902989|gb|EEH89248.1| diaminopimelate epimerase [Escherichia sp. 3_2_53FAA]
gi|281180858|dbj|BAI57188.1| diaminopimelate epimerase [Escherichia coli SE15]
gi|291431043|gb|EFF04038.1| diaminopimelate epimerase [Escherichia coli B185]
gi|299878020|gb|EFI86231.1| diaminopimelate epimerase [Escherichia coli MS 196-1]
gi|300308042|gb|EFJ62562.1| diaminopimelate epimerase [Escherichia coli MS 200-1]
gi|300317902|gb|EFJ67686.1| diaminopimelate epimerase [Escherichia coli MS 175-1]
gi|300355857|gb|EFJ71727.1| diaminopimelate epimerase [Escherichia coli MS 198-1]
gi|300395869|gb|EFJ79407.1| diaminopimelate epimerase [Escherichia coli MS 69-1]
gi|300403944|gb|EFJ87482.1| diaminopimelate epimerase [Escherichia coli MS 84-1]
gi|300411597|gb|EFJ94907.1| diaminopimelate epimerase [Escherichia coli MS 115-1]
gi|300420399|gb|EFK03710.1| diaminopimelate epimerase [Escherichia coli MS 182-1]
gi|300450233|gb|EFK13853.1| diaminopimelate epimerase [Escherichia coli MS 116-1]
gi|300455175|gb|EFK18668.1| diaminopimelate epimerase [Escherichia coli MS 21-1]
gi|300462058|gb|EFK25551.1| diaminopimelate epimerase [Escherichia coli MS 187-1]
gi|300524131|gb|EFK45200.1| diaminopimelate epimerase [Escherichia coli MS 119-7]
gi|300528686|gb|EFK49748.1| diaminopimelate epimerase [Escherichia coli MS 107-1]
gi|300841005|gb|EFK68765.1| diaminopimelate epimerase [Escherichia coli MS 124-1]
gi|300845139|gb|EFK72899.1| diaminopimelate epimerase [Escherichia coli MS 78-1]
gi|301075649|gb|EFK90455.1| diaminopimelate epimerase [Escherichia coli MS 146-1]
gi|308120129|gb|EFO57391.1| diaminopimelate epimerase [Escherichia coli MS 145-7]
gi|315254174|gb|EFU34142.1| diaminopimelate epimerase [Escherichia coli MS 85-1]
gi|315284715|gb|EFU44160.1| diaminopimelate epimerase [Escherichia coli MS 110-3]
gi|320639292|gb|EFX08914.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. G5101]
gi|320655348|gb|EFX23290.1| diaminopimelate epimerase [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|323934197|gb|EGB30628.1| diaminopimelate epimerase [Escherichia coli E1520]
gi|323938945|gb|EGB35164.1| diaminopimelate epimerase [Escherichia coli E482]
gi|323943789|gb|EGB39884.1| diaminopimelate epimerase [Escherichia coli H120]
gi|323954016|gb|EGB49814.1| diaminopimelate epimerase [Escherichia coli H263]
gi|323959064|gb|EGB54733.1| diaminopimelate epimerase [Escherichia coli H489]
gi|323969350|gb|EGB64649.1| diaminopimelate epimerase [Escherichia coli TA007]
gi|323974391|gb|EGB69519.1| diaminopimelate epimerase [Escherichia coli TW10509]
gi|324007470|gb|EGB76689.1| diaminopimelate epimerase [Escherichia coli MS 57-2]
gi|324014714|gb|EGB83933.1| diaminopimelate epimerase [Escherichia coli MS 60-1]
gi|324016214|gb|EGB85433.1| diaminopimelate epimerase [Escherichia coli MS 117-3]
gi|324111034|gb|EGC05021.1| diaminopimelate epimerase [Escherichia fergusonii B253]
gi|324115728|gb|EGC09663.1| diaminopimelate epimerase [Escherichia coli E1167]
gi|325499222|gb|EGC97081.1| diaminopimelate epimerase [Escherichia fergusonii ECD227]
gi|331036214|gb|EGI08449.1| diaminopimelate epimerase [Escherichia coli H736]
gi|331041504|gb|EGI13652.1| diaminopimelate epimerase [Escherichia coli M605]
gi|331046815|gb|EGI18899.1| diaminopimelate epimerase [Escherichia coli M718]
gi|331057357|gb|EGI29346.1| diaminopimelate epimerase [Escherichia coli TA143]
gi|331062128|gb|EGI34050.1| diaminopimelate epimerase [Escherichia coli TA271]
gi|331067563|gb|EGI38967.1| diaminopimelate epimerase [Escherichia coli TA280]
gi|331072466|gb|EGI43798.1| diaminopimelate epimerase [Escherichia coli H591]
gi|331077230|gb|EGI48444.1| diaminopimelate epimerase [Escherichia coli H299]
gi|332105035|gb|EGJ08381.1| diaminopimelate epimerase [Shigella sp. D9]
gi|342929395|gb|EGU98117.1| diaminopimelate epimerase [Escherichia coli MS 79-10]
gi|349740440|gb|AEQ15146.1| diaminopimelate epimerase [Escherichia coli O7:K1 str. CE10]
gi|383476788|gb|EID68721.1| diaminopimelate epimerase [Escherichia coli W26]
gi|384376914|gb|EIE34814.1| diaminopimelate epimerase [Escherichia coli J53]
gi|384472199|gb|EIE56259.1| diaminopimelate epimerase [Escherichia coli AI27]
gi|388397645|gb|EIL58617.1| diaminopimelate epimerase [Escherichia coli 576-1]
gi|412965187|emb|CCK49117.1| diaminopimelate epimerase [Escherichia coli chi7122]
gi|412971772|emb|CCJ46437.1| diaminopimelate epimerase [Escherichia coli]
Length = 275
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 162/289 (56%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MMQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+
Sbjct: 60 HYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 MGEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVD 166
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 DVDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAV 226
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 AVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275
>gi|421890928|ref|ZP_16321766.1| diaminopimelate epimerase [Ralstonia solanacearum K60-1]
gi|378963722|emb|CCF98514.1| diaminopimelate epimerase [Ralstonia solanacearum K60-1]
Length = 292
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 158/290 (54%), Gaps = 12/290 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
LHF K HG GNDF+++D T TPEQ + DR+FG+GAD ++ D+
Sbjct: 3 LHFTKMHGAGNDFVVLDG-IETPIDFTPEQWRAIADRHFGVGADQLLLVERATRPDVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L K++ V G+ +Q DG+V VDM
Sbjct: 62 YRIFNHDGGEVEHCGNGARCFVKFVTD-RGLTDKRTIRVEVMHGIATLTMQPDGQVTVDM 120
Query: 198 GEPILKASD---VPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ +A+ VP L + + L V+G ++ +SMGNPH V
Sbjct: 121 GAPVFEAARLPFVPDGLPTRVEGRDAQHALQVNGRTAWLSTMSMGNPHAVQVVDD----- 175
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ + E GP E H+VFP R N F+EI+ +++RV+ERGAG TLACGTGACA V
Sbjct: 176 -AEAFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAV 234
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VA + G + V GG L I W E V MTGPA VF G++ L+
Sbjct: 235 VAGIRRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDLD 284
>gi|157144437|ref|YP_001451756.1| diaminopimelate epimerase [Citrobacter koseri ATCC BAA-895]
gi|157081642|gb|ABV11320.1| hypothetical protein CKO_00151 [Citrobacter koseri ATCC BAA-895]
Length = 275
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 162/289 (56%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MMQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+
Sbjct: 60 HYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTDDELVRVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP + + VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 MGEPNFEPAQVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVD 166
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+D + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 NIDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAV 226
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 AVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 275
>gi|206580980|ref|YP_002241128.1| diaminopimelate epimerase [Klebsiella pneumoniae 342]
gi|238892409|ref|YP_002917143.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|262040879|ref|ZP_06014105.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|290513163|ref|ZP_06552525.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55]
gi|329997492|ref|ZP_08302794.1| diaminopimelate epimerase [Klebsiella sp. MS 92-3]
gi|424833259|ref|ZP_18257987.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
Ecl8]
gi|424930902|ref|ZP_18349274.1| Diaminopimelate epimerase 2 (DAP epimerase 2) [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
gi|206570038|gb|ACI11814.1| diaminopimelate epimerase [Klebsiella pneumoniae 342]
gi|238544725|dbj|BAH61076.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|259041768|gb|EEW42813.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|289774374|gb|EFD82380.1| diaminopimelate epimerase [Klebsiella sp. 1_1_55]
gi|328539060|gb|EGF65099.1| diaminopimelate epimerase [Klebsiella sp. MS 92-3]
gi|407805089|gb|EKF76340.1| Diaminopimelate epimerase 2 (DAP epimerase 2) [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
gi|414710709|emb|CCN32413.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
Ecl8]
Length = 275
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 162/289 (56%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MMQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+
Sbjct: 60 HYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP + S VP + + ++++ + V C VSMGNPHCV Q
Sbjct: 119 MGEPNFEPSQVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCVI------QVD 166
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
VD + +GP E H FP R N F++++ S +++RV+ERGAG T ACG+GACA V
Sbjct: 167 DVDTAAVETLGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAV 226
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK ++MTGPA V+ G + L
Sbjct: 227 AVGIQQGLLAETVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 275
>gi|226322427|ref|ZP_03797945.1| hypothetical protein COPCOM_00198 [Coprococcus comes ATCC 27758]
gi|225209149|gb|EEG91503.1| diaminopimelate epimerase [Coprococcus comes ATCC 27758]
Length = 275
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 116/285 (40%), Positives = 165/285 (57%), Gaps = 20/285 (7%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRIT--PEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
F K HGLGND++ + N R+ P A LCDR++GIGADG+I P +D+ M
Sbjct: 3 FTKMHGLGNDYVCI---NCFRERVEDPPGFARTLCDRHYGIGADGLILICPS-KVSDFKM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV---K 194
I+NSDGS MCGNG+RC +++ + L GK++ ++ T +G+ + DGK
Sbjct: 59 EIYNSDGSVAGMCGNGIRCLGKYVYDYR-LTGKETLSIETKSGIRNMHLHIQDGKACGAM 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG P L A +P + + KD V+ ++V + +T +SMGNPH V F +
Sbjct: 118 VDMGVPRLNAHSIP--ILSEKDL-VINDPIEVQKKNYRMTGISMGNPHAVIFLEE----- 169
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
++ ++L E G + E H FP R N EF + + ++++RVWERG G TLACGTGACA V
Sbjct: 170 -INGISLEETGRELEFHPRFPERANIEFCHVTARDRMEIRVWERGVGETLACGTGACAAV 228
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VA+VL + V L GG L + W + NHV++ GPA VF G
Sbjct: 229 VASVLNDLTDEEVIVKLLGGELSVRWDRKVNHVFLEGPAVKVFDG 273
>gi|90111650|ref|NP_418254.2| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
MG1655]
gi|110644134|ref|YP_671864.1| diaminopimelate epimerase [Escherichia coli 536]
gi|157158618|ref|YP_001465293.1| diaminopimelate epimerase [Escherichia coli E24377A]
gi|157163286|ref|YP_001460604.1| diaminopimelate epimerase [Escherichia coli HS]
gi|161367483|ref|NP_290438.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EDL933]
gi|161950007|ref|YP_405361.2| diaminopimelate epimerase [Shigella dysenteriae Sd197]
gi|161984820|ref|YP_410107.2| diaminopimelate epimerase [Shigella boydii Sb227]
gi|161986412|ref|YP_312740.2| diaminopimelate epimerase [Shigella sonnei Ss046]
gi|162139740|ref|NP_312766.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. Sakai]
gi|168768090|ref|ZP_02793097.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4486]
gi|168786647|ref|ZP_02811654.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC869]
gi|168801127|ref|ZP_02826134.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC508]
gi|170022168|ref|YP_001727122.1| diaminopimelate epimerase [Escherichia coli ATCC 8739]
gi|170083292|ref|YP_001732612.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
DH10B]
gi|170683935|ref|YP_001746126.1| diaminopimelate epimerase [Escherichia coli SMS-3-5]
gi|187776119|ref|ZP_02800647.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4196]
gi|188025000|ref|ZP_02775401.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4113]
gi|189010227|ref|ZP_02805715.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4076]
gi|189401857|ref|ZP_02778713.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4401]
gi|189404374|ref|ZP_02788941.2| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4501]
gi|191166063|ref|ZP_03027898.1| diaminopimelate epimerase [Escherichia coli B7A]
gi|191174260|ref|ZP_03035769.1| diaminopimelate epimerase [Escherichia coli F11]
gi|193065687|ref|ZP_03046752.1| diaminopimelate epimerase [Escherichia coli E22]
gi|193067957|ref|ZP_03048922.1| diaminopimelate epimerase [Escherichia coli E110019]
gi|194429206|ref|ZP_03061734.1| diaminopimelate epimerase [Escherichia coli B171]
gi|194438660|ref|ZP_03070748.1| diaminopimelate epimerase [Escherichia coli 101-1]
gi|195938098|ref|ZP_03083480.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4024]
gi|208809709|ref|ZP_03252046.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4206]
gi|208812090|ref|ZP_03253419.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4045]
gi|208820197|ref|ZP_03260517.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4042]
gi|209399378|ref|YP_002273326.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4115]
gi|217326039|ref|ZP_03442123.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14588]
gi|218550967|ref|YP_002384758.1| diaminopimelate epimerase [Escherichia fergusonii ATCC 35469]
gi|218556372|ref|YP_002389286.1| diaminopimelate epimerase [Escherichia coli IAI1]
gi|218560873|ref|YP_002393786.1| diaminopimelate epimerase [Escherichia coli S88]
gi|218697527|ref|YP_002405194.1| diaminopimelate epimerase [Escherichia coli 55989]
gi|218701277|ref|YP_002408906.1| diaminopimelate epimerase [Escherichia coli IAI39]
gi|218707443|ref|YP_002414962.1| diaminopimelate epimerase [Escherichia coli UMN026]
gi|222158502|ref|YP_002558641.1| Diaminopimelate epimerase [Escherichia coli LF82]
gi|238902886|ref|YP_002928682.1| diaminopimelate epimerase [Escherichia coli BW2952]
gi|251787066|ref|YP_003001370.1| diaminopimelate epimerase [Escherichia coli BL21(DE3)]
gi|253775567|ref|YP_003038398.1| diaminopimelate epimerase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254163751|ref|YP_003046859.1| diaminopimelate epimerase [Escherichia coli B str. REL606]
gi|254290501|ref|YP_003056249.1| diaminopimelate epimerase [Escherichia coli BL21(DE3)]
gi|254795805|ref|YP_003080642.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14359]
gi|260846415|ref|YP_003224193.1| diaminopimelate epimerase DapF [Escherichia coli O103:H2 str.
12009]
gi|260857785|ref|YP_003231676.1| diaminopimelate epimerase [Escherichia coli O26:H11 str. 11368]
gi|260870534|ref|YP_003236936.1| diaminopimelate epimerase DapF [Escherichia coli O111:H- str.
11128]
gi|261225583|ref|ZP_05939864.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. FRIK2000]
gi|261255629|ref|ZP_05948162.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. FRIK966]
gi|291285223|ref|YP_003502041.1| Diaminopimelate epimerase [Escherichia coli O55:H7 str. CB9615]
gi|293407436|ref|ZP_06651356.1| dapF [Escherichia coli FVEC1412]
gi|293413251|ref|ZP_06655913.1| diaminopimelate epimerase [Escherichia coli B354]
gi|293468127|ref|ZP_06664539.1| diaminopimelate epimerase [Escherichia coli B088]
gi|298383176|ref|ZP_06992770.1| diaminopimelate epimerase [Escherichia coli FVEC1302]
gi|307313617|ref|ZP_07593237.1| diaminopimelate epimerase [Escherichia coli W]
gi|309784525|ref|ZP_07679163.1| diaminopimelate epimerase [Shigella dysenteriae 1617]
gi|312971904|ref|ZP_07786078.1| diaminopimelate epimerase [Escherichia coli 1827-70]
gi|378715274|ref|YP_005280167.1| diaminopimelate epimerase [Escherichia coli KO11FL]
gi|383181055|ref|YP_005459060.1| diaminopimelate epimerase [Shigella sonnei 53G]
gi|386282528|ref|ZP_10060176.1| diaminopimelate epimerase [Escherichia sp. 4_1_40B]
gi|386597659|ref|YP_006094059.1| diaminopimelate epimerase [Escherichia coli DH1]
gi|386601835|ref|YP_006103341.1| diaminopimelate epimerase [Escherichia coli IHE3034]
gi|386606388|ref|YP_006112688.1| diaminopimelate epimerase [Escherichia coli UM146]
gi|386611184|ref|YP_006126670.1| diaminopimelate epimerase [Escherichia coli W]
gi|386616619|ref|YP_006136285.1| diaminopimelate epimerase DapF [Escherichia coli UMNK88]
gi|386699311|ref|YP_006163148.1| diaminopimelate epimerase [Escherichia coli KO11FL]
gi|386707073|ref|YP_006170920.1| diaminopimelate epimerase [Escherichia coli P12b]
gi|386711717|ref|YP_006175438.1| diaminopimelate epimerase [Escherichia coli W]
gi|387509257|ref|YP_006161513.1| diaminopimelate epimerase [Escherichia coli O55:H7 str. RM12579]
gi|387609617|ref|YP_006098473.1| diaminopimelate epimerase [Escherichia coli 042]
gi|387614508|ref|YP_006117624.1| diaminopimelate epimerase [Escherichia coli ETEC H10407]
gi|387619101|ref|YP_006122123.1| diaminopimelate epimerase [Escherichia coli O83:H1 str. NRG 857C]
gi|387623462|ref|YP_006131090.1| diaminopimelate epimerase [Escherichia coli DH1]
gi|387885037|ref|YP_006315339.1| diaminopimelate epimerase [Escherichia coli Xuzhou21]
gi|388479440|ref|YP_491632.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
W3110]
gi|404377203|ref|ZP_10982341.1| diaminopimelate epimerase [Escherichia sp. 1_1_43]
gi|407466815|ref|YP_006786743.1| diaminopimelate epimerase [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407484460|ref|YP_006781610.1| diaminopimelate epimerase [Escherichia coli O104:H4 str.
2011C-3493]
gi|410485006|ref|YP_006772552.1| diaminopimelate epimerase [Escherichia coli O104:H4 str.
2009EL-2050]
gi|414578686|ref|ZP_11435848.1| diaminopimelate epimerase [Shigella sonnei 3233-85]
gi|415773833|ref|ZP_11486380.1| diaminopimelate epimerase [Escherichia coli 3431]
gi|415786007|ref|ZP_11493321.1| diaminopimelate epimerase [Escherichia coli EPECa14]
gi|415799715|ref|ZP_11498972.1| diaminopimelate epimerase [Escherichia coli E128010]
gi|415811049|ref|ZP_11503399.1| diaminopimelate epimerase [Escherichia coli LT-68]
gi|415821861|ref|ZP_11510642.1| diaminopimelate epimerase [Escherichia coli OK1180]
gi|415838414|ref|ZP_11520392.1| diaminopimelate epimerase [Escherichia coli RN587/1]
gi|416265095|ref|ZP_11641282.1| Diaminopimelate epimerase [Shigella dysenteriae CDC 74-1112]
gi|416298264|ref|ZP_11651923.1| Diaminopimelate epimerase [Shigella flexneri CDC 796-83]
gi|416307608|ref|ZP_11654649.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. 1044]
gi|416319742|ref|ZP_11662294.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. EC1212]
gi|416326920|ref|ZP_11666995.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. 1125]
gi|416333504|ref|ZP_11670731.1| Diaminopimelate epimerase [Escherichia coli WV_060327]
gi|416345843|ref|ZP_11679258.1| Diaminopimelate epimerase [Escherichia coli EC4100B]
gi|416790114|ref|ZP_11880980.1| diaminopimelate epimerase [Escherichia coli O157:H- str. 493-89]
gi|416801888|ref|ZP_11885868.1| diaminopimelate epimerase [Escherichia coli O157:H- str. H 2687]
gi|416823201|ref|ZP_11895407.1| diaminopimelate epimerase [Escherichia coli O55:H7 str. USDA 5905]
gi|416833522|ref|ZP_11900402.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. LSU-61]
gi|417087768|ref|ZP_11954626.1| diaminopimelate epimerase [Escherichia coli cloneA_i1]
gi|417132477|ref|ZP_11977262.1| diaminopimelate epimerase [Escherichia coli 5.0588]
gi|417142247|ref|ZP_11984822.1| diaminopimelate epimerase [Escherichia coli 97.0259]
gi|417148819|ref|ZP_11988910.1| diaminopimelate epimerase [Escherichia coli 1.2264]
gi|417158424|ref|ZP_11996048.1| diaminopimelate epimerase [Escherichia coli 96.0497]
gi|417169240|ref|ZP_12001495.1| diaminopimelate epimerase [Escherichia coli 99.0741]
gi|417175772|ref|ZP_12005568.1| diaminopimelate epimerase [Escherichia coli 3.2608]
gi|417185665|ref|ZP_12011066.1| diaminopimelate epimerase [Escherichia coli 93.0624]
gi|417201866|ref|ZP_12018116.1| diaminopimelate epimerase [Escherichia coli 4.0522]
gi|417217856|ref|ZP_12023730.1| diaminopimelate epimerase [Escherichia coli JB1-95]
gi|417221567|ref|ZP_12025007.1| diaminopimelate epimerase [Escherichia coli 96.154]
gi|417241809|ref|ZP_12037566.1| diaminopimelate epimerase [Escherichia coli 9.0111]
gi|417249448|ref|ZP_12041232.1| diaminopimelate epimerase [Escherichia coli 4.0967]
gi|417265021|ref|ZP_12052400.1| diaminopimelate epimerase [Escherichia coli 2.3916]
gi|417270048|ref|ZP_12057408.1| diaminopimelate epimerase [Escherichia coli 3.3884]
gi|417273144|ref|ZP_12060491.1| diaminopimelate epimerase [Escherichia coli 2.4168]
gi|417279154|ref|ZP_12066464.1| diaminopimelate epimerase [Escherichia coli 3.2303]
gi|417280599|ref|ZP_12067899.1| diaminopimelate epimerase [Escherichia coli 3003]
gi|417285960|ref|ZP_12073251.1| diaminopimelate epimerase [Escherichia coli TW07793]
gi|417294079|ref|ZP_12081358.1| diaminopimelate epimerase [Escherichia coli B41]
gi|417296974|ref|ZP_12084221.1| diaminopimelate epimerase [Escherichia coli 900105 (10e)]
gi|417310384|ref|ZP_12097198.1| Diaminopimelate epimerase [Escherichia coli PCN033]
gi|417583432|ref|ZP_12234230.1| diaminopimelate epimerase [Escherichia coli STEC_B2F1]
gi|417588948|ref|ZP_12239709.1| diaminopimelate epimerase [Escherichia coli STEC_C165-02]
gi|417594279|ref|ZP_12244965.1| diaminopimelate epimerase [Escherichia coli 2534-86]
gi|417604715|ref|ZP_12255277.1| diaminopimelate epimerase [Escherichia coli STEC_94C]
gi|417620480|ref|ZP_12270881.1| diaminopimelate epimerase [Escherichia coli G58-1]
gi|417625987|ref|ZP_12276275.1| diaminopimelate epimerase [Escherichia coli STEC_H.1.8]
gi|417631285|ref|ZP_12281517.1| diaminopimelate epimerase [Escherichia coli STEC_MHI813]
gi|417636761|ref|ZP_12286966.1| diaminopimelate epimerase [Escherichia coli STEC_S1191]
gi|417641828|ref|ZP_12291952.1| diaminopimelate epimerase [Escherichia coli TX1999]
gi|417664435|ref|ZP_12314014.1| diaminopimelate epimerase [Escherichia coli AA86]
gi|417669398|ref|ZP_12318934.1| diaminopimelate epimerase [Escherichia coli STEC_O31]
gi|417684578|ref|ZP_12333916.1| diaminopimelate epimerase [Shigella boydii 3594-74]
gi|417807496|ref|ZP_12454424.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. LB226692]
gi|417835238|ref|ZP_12481677.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 01-09591]
gi|417868138|ref|ZP_12513169.1| dapF [Escherichia coli O104:H4 str. C227-11]
gi|417945683|ref|ZP_12588913.1| diaminopimelate epimerase [Escherichia coli XH140A]
gi|417977676|ref|ZP_12618457.1| diaminopimelate epimerase [Escherichia coli XH001]
gi|418269860|ref|ZP_12888050.1| diaminopimelate epimerase [Shigella sonnei str. Moseley]
gi|418305441|ref|ZP_12917235.1| diaminopimelate epimerase [Escherichia coli UMNF18]
gi|418944564|ref|ZP_13497604.1| diaminopimelate epimerase [Escherichia coli O157:H43 str. T22]
gi|419043196|ref|ZP_13590173.1| diaminopimelate epimerase [Escherichia coli DEC3A]
gi|419053685|ref|ZP_13600550.1| diaminopimelate epimerase [Escherichia coli DEC3B]
gi|419059721|ref|ZP_13606519.1| diaminopimelate epimerase [Escherichia coli DEC3C]
gi|419065767|ref|ZP_13612466.1| diaminopimelate epimerase [Escherichia coli DEC3D]
gi|419072151|ref|ZP_13617749.1| diaminopimelate epimerase [Escherichia coli DEC3E]
gi|419077974|ref|ZP_13623470.1| diaminopimelate epimerase [Escherichia coli DEC3F]
gi|419083131|ref|ZP_13628572.1| diaminopimelate epimerase [Escherichia coli DEC4A]
gi|419089115|ref|ZP_13634463.1| diaminopimelate epimerase [Escherichia coli DEC4B]
gi|419094937|ref|ZP_13640211.1| diaminopimelate epimerase [Escherichia coli DEC4C]
gi|419100735|ref|ZP_13645920.1| diaminopimelate epimerase [Escherichia coli DEC4D]
gi|419112693|ref|ZP_13657734.1| diaminopimelate epimerase [Escherichia coli DEC4F]
gi|419117372|ref|ZP_13662379.1| diaminopimelate epimerase [Escherichia coli DEC5A]
gi|419123321|ref|ZP_13668257.1| diaminopimelate epimerase [Escherichia coli DEC5B]
gi|419128639|ref|ZP_13673507.1| diaminopimelate epimerase [Escherichia coli DEC5C]
gi|419134030|ref|ZP_13678853.1| diaminopimelate epimerase [Escherichia coli DEC5D]
gi|419139171|ref|ZP_13683960.1| diaminopimelate epimerase [Escherichia coli DEC5E]
gi|419144917|ref|ZP_13689643.1| diaminopimelate epimerase [Escherichia coli DEC6A]
gi|419150830|ref|ZP_13695475.1| diaminopimelate epimerase [Escherichia coli DEC6B]
gi|419166774|ref|ZP_13711221.1| diaminopimelate epimerase [Escherichia coli DEC6E]
gi|419172768|ref|ZP_13716639.1| diaminopimelate epimerase [Escherichia coli DEC7A]
gi|419177536|ref|ZP_13721342.1| diaminopimelate epimerase [Escherichia coli DEC7B]
gi|419183329|ref|ZP_13726934.1| diaminopimelate epimerase [Escherichia coli DEC7C]
gi|419188943|ref|ZP_13732445.1| diaminopimelate epimerase [Escherichia coli DEC7D]
gi|419193879|ref|ZP_13737317.1| diaminopimelate epimerase [Escherichia coli DEC7E]
gi|419199596|ref|ZP_13742883.1| diaminopimelate epimerase [Escherichia coli DEC8A]
gi|419205989|ref|ZP_13749142.1| diaminopimelate epimerase [Escherichia coli DEC8B]
gi|419212331|ref|ZP_13755393.1| diaminopimelate epimerase [Escherichia coli DEC8C]
gi|419218176|ref|ZP_13761165.1| diaminopimelate epimerase [Escherichia coli DEC8D]
gi|419219104|ref|ZP_13762069.1| diaminopimelate epimerase [Escherichia coli DEC8E]
gi|419229314|ref|ZP_13772149.1| diaminopimelate epimerase [Escherichia coli DEC9A]
gi|419235052|ref|ZP_13777815.1| diaminopimelate epimerase [Escherichia coli DEC9B]
gi|419240494|ref|ZP_13783195.1| diaminopimelate epimerase [Escherichia coli DEC9C]
gi|419245908|ref|ZP_13788537.1| diaminopimelate epimerase [Escherichia coli DEC9D]
gi|419251913|ref|ZP_13794476.1| diaminopimelate epimerase [Escherichia coli DEC9E]
gi|419257394|ref|ZP_13799891.1| diaminopimelate epimerase [Escherichia coli DEC10A]
gi|419263522|ref|ZP_13805926.1| diaminopimelate epimerase [Escherichia coli DEC10B]
gi|419264782|ref|ZP_13807171.1| diaminopimelate epimerase [Escherichia coli DEC10C]
gi|419270435|ref|ZP_13812769.1| diaminopimelate epimerase [Escherichia coli DEC10D]
gi|419280440|ref|ZP_13822679.1| diaminopimelate epimerase [Escherichia coli DEC10E]
gi|419286618|ref|ZP_13828777.1| diaminopimelate epimerase [Escherichia coli DEC10F]
gi|419292025|ref|ZP_13834107.1| diaminopimelate epimerase [Escherichia coli DEC11A]
gi|419297305|ref|ZP_13839339.1| diaminopimelate epimerase [Escherichia coli DEC11B]
gi|419302897|ref|ZP_13844887.1| diaminopimelate epimerase [Escherichia coli DEC11C]
gi|419308841|ref|ZP_13850729.1| diaminopimelate epimerase [Escherichia coli DEC11D]
gi|419319305|ref|ZP_13861099.1| diaminopimelate epimerase [Escherichia coli DEC12A]
gi|419325356|ref|ZP_13867040.1| diaminopimelate epimerase [Escherichia coli DEC12B]
gi|419331525|ref|ZP_13873116.1| diaminopimelate epimerase [Escherichia coli DEC12C]
gi|419336800|ref|ZP_13878312.1| diaminopimelate epimerase [Escherichia coli DEC12D]
gi|419342395|ref|ZP_13883847.1| diaminopimelate epimerase [Escherichia coli DEC12E]
gi|419347588|ref|ZP_13888954.1| diaminopimelate epimerase [Escherichia coli DEC13A]
gi|419352049|ref|ZP_13893375.1| diaminopimelate epimerase [Escherichia coli DEC13B]
gi|419362495|ref|ZP_13903700.1| diaminopimelate epimerase [Escherichia coli DEC13D]
gi|419367659|ref|ZP_13908807.1| diaminopimelate epimerase [Escherichia coli DEC13E]
gi|419372463|ref|ZP_13913569.1| diaminopimelate epimerase [Escherichia coli DEC14A]
gi|419388565|ref|ZP_13929429.1| diaminopimelate epimerase [Escherichia coli DEC14D]
gi|419393874|ref|ZP_13934671.1| diaminopimelate epimerase [Escherichia coli DEC15A]
gi|419399208|ref|ZP_13939967.1| diaminopimelate epimerase [Escherichia coli DEC15B]
gi|419404454|ref|ZP_13945170.1| diaminopimelate epimerase [Escherichia coli DEC15C]
gi|419409617|ref|ZP_13950298.1| diaminopimelate epimerase [Escherichia coli DEC15D]
gi|419415176|ref|ZP_13955806.1| diaminopimelate epimerase [Escherichia coli DEC15E]
gi|419702649|ref|ZP_14230238.1| diaminopimelate epimerase [Escherichia coli SCI-07]
gi|419812386|ref|ZP_14337253.1| diaminopimelate epimerase [Escherichia coli O32:H37 str. P4]
gi|419863352|ref|ZP_14385891.1| diaminopimelate epimerase [Escherichia coli O103:H25 str. CVM9340]
gi|419869024|ref|ZP_14391250.1| diaminopimelate epimerase [Escherichia coli O103:H2 str. CVM9450]
gi|419874675|ref|ZP_14396589.1| diaminopimelate epimerase [Escherichia coli O111:H11 str. CVM9534]
gi|419879660|ref|ZP_14401091.1| diaminopimelate epimerase [Escherichia coli O111:H11 str. CVM9545]
gi|419888526|ref|ZP_14409022.1| diaminopimelate epimerase [Escherichia coli O111:H8 str. CVM9570]
gi|419893760|ref|ZP_14413722.1| diaminopimelate epimerase [Escherichia coli O111:H8 str. CVM9574]
gi|419902612|ref|ZP_14421815.1| diaminopimelate epimerase [Escherichia coli O26:H11 str. CVM9942]
gi|419905668|ref|ZP_14424624.1| diaminopimelate epimerase [Escherichia coli O26:H11 str. CVM10026]
gi|419912579|ref|ZP_14431029.1| diaminopimelate epimerase [Escherichia coli KD1]
gi|419918834|ref|ZP_14437010.1| diaminopimelate epimerase [Escherichia coli KD2]
gi|419926466|ref|ZP_14444233.1| diaminopimelate epimerase [Escherichia coli 541-15]
gi|419926621|ref|ZP_14444372.1| diaminopimelate epimerase [Escherichia coli 541-1]
gi|419938612|ref|ZP_14455438.1| diaminopimelate epimerase [Escherichia coli 75]
gi|419943297|ref|ZP_14459857.1| diaminopimelate epimerase [Escherichia coli HM605]
gi|419947676|ref|ZP_14463995.1| diaminopimelate epimerase [Escherichia coli CUMT8]
gi|420088569|ref|ZP_14600440.1| diaminopimelate epimerase [Escherichia coli O111:H8 str. CVM9602]
gi|420094072|ref|ZP_14605685.1| diaminopimelate epimerase [Escherichia coli O111:H8 str. CVM9634]
gi|420099079|ref|ZP_14610325.1| diaminopimelate epimerase [Escherichia coli O111:H11 str. CVM9455]
gi|420109839|ref|ZP_14619927.1| diaminopimelate epimerase [Escherichia coli O111:H11 str. CVM9553]
gi|420113542|ref|ZP_14623274.1| diaminopimelate epimerase [Escherichia coli O26:H11 str. CVM10021]
gi|420119754|ref|ZP_14629008.1| diaminopimelate epimerase [Escherichia coli O26:H11 str. CVM10030]
gi|420126738|ref|ZP_14635451.1| diaminopimelate epimerase [Escherichia coli O26:H11 str. CVM10224]
gi|420131485|ref|ZP_14639921.1| diaminopimelate epimerase [Escherichia coli O26:H11 str. CVM9952]
gi|420272347|ref|ZP_14774693.1| diaminopimelate epimerase [Escherichia coli PA22]
gi|420283226|ref|ZP_14785456.1| diaminopimelate epimerase [Escherichia coli TW06591]
gi|420284118|ref|ZP_14786339.1| diaminopimelate epimerase [Escherichia coli TW10246]
gi|420289843|ref|ZP_14792013.1| diaminopimelate epimerase [Escherichia coli TW11039]
gi|420300911|ref|ZP_14802953.1| diaminopimelate epimerase [Escherichia coli TW09109]
gi|420306901|ref|ZP_14808886.1| diaminopimelate epimerase [Escherichia coli TW10119]
gi|420312149|ref|ZP_14814074.1| diaminopimelate epimerase [Escherichia coli EC1738]
gi|420317871|ref|ZP_14819739.1| diaminopimelate epimerase [Escherichia coli EC1734]
gi|420327866|ref|ZP_14829604.1| diaminopimelate epimerase [Shigella flexneri CCH060]
gi|420355262|ref|ZP_14856334.1| diaminopimelate epimerase [Shigella boydii 4444-74]
gi|420361242|ref|ZP_14862184.1| diaminopimelate epimerase [Shigella sonnei 3226-85]
gi|420365794|ref|ZP_14866653.1| diaminopimelate epimerase [Shigella sonnei 4822-66]
gi|420382809|ref|ZP_14882239.1| diaminopimelate epimerase [Shigella dysenteriae 225-75]
gi|420388164|ref|ZP_14887495.1| diaminopimelate epimerase [Escherichia coli EPECa12]
gi|420393944|ref|ZP_14893188.1| diaminopimelate epimerase [Escherichia coli EPEC C342-62]
gi|421684839|ref|ZP_16124620.1| diaminopimelate epimerase [Shigella flexneri 1485-80]
gi|421777507|ref|ZP_16214102.1| diaminopimelate epimerase [Escherichia coli AD30]
gi|421814861|ref|ZP_16250560.1| diaminopimelate epimerase [Escherichia coli 8.0416]
gi|421820610|ref|ZP_16256092.1| diaminopimelate epimerase [Escherichia coli 10.0821]
gi|421826586|ref|ZP_16261938.1| diaminopimelate epimerase [Escherichia coli FRIK920]
gi|421833443|ref|ZP_16268720.1| diaminopimelate epimerase [Escherichia coli PA7]
gi|422335418|ref|ZP_16416417.1| diaminopimelate epimerase [Escherichia coli 4_1_47FAA]
gi|422752081|ref|ZP_16805986.1| diaminopimelate epimerase [Escherichia coli H252]
gi|422818963|ref|ZP_16867175.1| diaminopimelate epimerase [Escherichia coli M919]
gi|422831051|ref|ZP_16879201.1| diaminopimelate epimerase [Escherichia coli B093]
gi|422836225|ref|ZP_16884273.1| diaminopimelate epimerase [Escherichia coli E101]
gi|422842099|ref|ZP_16890065.1| diaminopimelate epimerase [Escherichia coli H397]
gi|422963286|ref|ZP_16973130.1| diaminopimelate epimerase [Escherichia coli H494]
gi|422990076|ref|ZP_16980848.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. C227-11]
gi|422996974|ref|ZP_16987736.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. C236-11]
gi|423002068|ref|ZP_16992820.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 09-7901]
gi|423005724|ref|ZP_16996469.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 04-8351]
gi|423012285|ref|ZP_17003017.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-3677]
gi|423021516|ref|ZP_17012221.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-4404]
gi|423026674|ref|ZP_17017368.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-4522]
gi|423032501|ref|ZP_17023187.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-4623]
gi|423035340|ref|ZP_17026017.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-4632
C1]
gi|423040496|ref|ZP_17031165.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-4632
C2]
gi|423047181|ref|ZP_17037840.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-4632
C3]
gi|423055720|ref|ZP_17044526.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-4632
C4]
gi|423057723|ref|ZP_17046522.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-4632
C5]
gi|423703331|ref|ZP_17677763.1| diaminopimelate epimerase [Escherichia coli H730]
gi|423708118|ref|ZP_17682498.1| diaminopimelate epimerase [Escherichia coli B799]
gi|423728033|ref|ZP_17701814.1| diaminopimelate epimerase [Escherichia coli PA31]
gi|424080139|ref|ZP_17817078.1| diaminopimelate epimerase [Escherichia coli FDA505]
gi|424086536|ref|ZP_17823005.1| diaminopimelate epimerase [Escherichia coli FDA517]
gi|424092949|ref|ZP_17828856.1| diaminopimelate epimerase [Escherichia coli FRIK1996]
gi|424099640|ref|ZP_17834877.1| diaminopimelate epimerase [Escherichia coli FRIK1985]
gi|424105832|ref|ZP_17840546.1| diaminopimelate epimerase [Escherichia coli FRIK1990]
gi|424112472|ref|ZP_17846682.1| diaminopimelate epimerase [Escherichia coli 93-001]
gi|424118405|ref|ZP_17852224.1| diaminopimelate epimerase [Escherichia coli PA3]
gi|424124605|ref|ZP_17857886.1| diaminopimelate epimerase [Escherichia coli PA5]
gi|424130769|ref|ZP_17863655.1| diaminopimelate epimerase [Escherichia coli PA9]
gi|424137082|ref|ZP_17869502.1| diaminopimelate epimerase [Escherichia coli PA10]
gi|424143638|ref|ZP_17875474.1| diaminopimelate epimerase [Escherichia coli PA14]
gi|424150009|ref|ZP_17881368.1| diaminopimelate epimerase [Escherichia coli PA15]
gi|424163734|ref|ZP_17886786.1| diaminopimelate epimerase [Escherichia coli PA24]
gi|424257386|ref|ZP_17892328.1| diaminopimelate epimerase [Escherichia coli PA25]
gi|424336074|ref|ZP_17898264.1| diaminopimelate epimerase [Escherichia coli PA28]
gi|424452340|ref|ZP_17903967.1| diaminopimelate epimerase [Escherichia coli PA32]
gi|424458506|ref|ZP_17909587.1| diaminopimelate epimerase [Escherichia coli PA33]
gi|424465035|ref|ZP_17915341.1| diaminopimelate epimerase [Escherichia coli PA39]
gi|424471270|ref|ZP_17921052.1| diaminopimelate epimerase [Escherichia coli PA41]
gi|424477759|ref|ZP_17927058.1| diaminopimelate epimerase [Escherichia coli PA42]
gi|424483540|ref|ZP_17932506.1| diaminopimelate epimerase [Escherichia coli TW07945]
gi|424489736|ref|ZP_17938258.1| diaminopimelate epimerase [Escherichia coli TW09098]
gi|424496429|ref|ZP_17943948.1| diaminopimelate epimerase [Escherichia coli TW09195]
gi|424503056|ref|ZP_17949925.1| diaminopimelate epimerase [Escherichia coli EC4203]
gi|424509329|ref|ZP_17955681.1| diaminopimelate epimerase [Escherichia coli EC4196]
gi|424516735|ref|ZP_17961306.1| diaminopimelate epimerase [Escherichia coli TW14313]
gi|424522862|ref|ZP_17966951.1| diaminopimelate epimerase [Escherichia coli TW14301]
gi|424528735|ref|ZP_17972430.1| diaminopimelate epimerase [Escherichia coli EC4421]
gi|424534877|ref|ZP_17978209.1| diaminopimelate epimerase [Escherichia coli EC4422]
gi|424540965|ref|ZP_17983893.1| diaminopimelate epimerase [Escherichia coli EC4013]
gi|424547112|ref|ZP_17989427.1| diaminopimelate epimerase [Escherichia coli EC4402]
gi|424553308|ref|ZP_17995119.1| diaminopimelate epimerase [Escherichia coli EC4439]
gi|424559510|ref|ZP_18000888.1| diaminopimelate epimerase [Escherichia coli EC4436]
gi|424565832|ref|ZP_18006818.1| diaminopimelate epimerase [Escherichia coli EC4437]
gi|424578117|ref|ZP_18018135.1| diaminopimelate epimerase [Escherichia coli EC1845]
gi|424583941|ref|ZP_18023571.1| diaminopimelate epimerase [Escherichia coli EC1863]
gi|424746297|ref|ZP_18174543.1| diaminopimelate epimerase [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424765034|ref|ZP_18192440.1| diaminopimelate epimerase [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424768541|ref|ZP_18195811.1| diaminopimelate epimerase [Escherichia coli O111:H8 str.
CFSAN001632]
gi|425100615|ref|ZP_18503335.1| diaminopimelate epimerase [Escherichia coli 3.4870]
gi|425106689|ref|ZP_18508988.1| diaminopimelate epimerase [Escherichia coli 5.2239]
gi|425112691|ref|ZP_18514596.1| diaminopimelate epimerase [Escherichia coli 6.0172]
gi|425117429|ref|ZP_18519202.1| diaminopimelate epimerase [Escherichia coli 8.0566]
gi|425122149|ref|ZP_18523821.1| diaminopimelate epimerase [Escherichia coli 8.0569]
gi|425134387|ref|ZP_18535223.1| diaminopimelate epimerase [Escherichia coli 8.2524]
gi|425140980|ref|ZP_18541346.1| diaminopimelate epimerase [Escherichia coli 10.0833]
gi|425146656|ref|ZP_18546633.1| diaminopimelate epimerase [Escherichia coli 10.0869]
gi|425152770|ref|ZP_18552368.1| diaminopimelate epimerase [Escherichia coli 88.0221]
gi|425170736|ref|ZP_18569194.1| diaminopimelate epimerase [Escherichia coli FDA507]
gi|425176780|ref|ZP_18574884.1| diaminopimelate epimerase [Escherichia coli FDA504]
gi|425182840|ref|ZP_18580521.1| diaminopimelate epimerase [Escherichia coli FRIK1999]
gi|425189140|ref|ZP_18586395.1| diaminopimelate epimerase [Escherichia coli FRIK1997]
gi|425202347|ref|ZP_18598540.1| diaminopimelate epimerase [Escherichia coli NE037]
gi|425214480|ref|ZP_18609867.1| diaminopimelate epimerase [Escherichia coli PA4]
gi|425220608|ref|ZP_18615555.1| diaminopimelate epimerase [Escherichia coli PA23]
gi|425227253|ref|ZP_18621704.1| diaminopimelate epimerase [Escherichia coli PA49]
gi|425233411|ref|ZP_18627435.1| diaminopimelate epimerase [Escherichia coli PA45]
gi|425239332|ref|ZP_18633037.1| diaminopimelate epimerase [Escherichia coli TT12B]
gi|425245567|ref|ZP_18638859.1| diaminopimelate epimerase [Escherichia coli MA6]
gi|425251761|ref|ZP_18644689.1| diaminopimelate epimerase [Escherichia coli 5905]
gi|425257561|ref|ZP_18650042.1| diaminopimelate epimerase [Escherichia coli CB7326]
gi|425263817|ref|ZP_18655793.1| diaminopimelate epimerase [Escherichia coli EC96038]
gi|425269808|ref|ZP_18661419.1| diaminopimelate epimerase [Escherichia coli 5412]
gi|425275101|ref|ZP_18666480.1| diaminopimelate epimerase [Escherichia coli TW15901]
gi|425280260|ref|ZP_18671472.1| diaminopimelate epimerase [Escherichia coli ARS4.2123]
gi|425285678|ref|ZP_18676690.1| diaminopimelate epimerase [Escherichia coli TW00353]
gi|425297284|ref|ZP_18687394.1| diaminopimelate epimerase [Escherichia coli PA38]
gi|425307615|ref|ZP_18697278.1| diaminopimelate epimerase [Escherichia coli N1]
gi|425313979|ref|ZP_18703131.1| diaminopimelate epimerase [Escherichia coli EC1735]
gi|425319960|ref|ZP_18708722.1| diaminopimelate epimerase [Escherichia coli EC1736]
gi|425326099|ref|ZP_18714411.1| diaminopimelate epimerase [Escherichia coli EC1737]
gi|425332411|ref|ZP_18720209.1| diaminopimelate epimerase [Escherichia coli EC1846]
gi|425338588|ref|ZP_18725912.1| diaminopimelate epimerase [Escherichia coli EC1847]
gi|425344882|ref|ZP_18731755.1| diaminopimelate epimerase [Escherichia coli EC1848]
gi|425350722|ref|ZP_18737165.1| diaminopimelate epimerase [Escherichia coli EC1849]
gi|425356994|ref|ZP_18743040.1| diaminopimelate epimerase [Escherichia coli EC1850]
gi|425362943|ref|ZP_18748575.1| diaminopimelate epimerase [Escherichia coli EC1856]
gi|425369208|ref|ZP_18754271.1| diaminopimelate epimerase [Escherichia coli EC1862]
gi|425375514|ref|ZP_18760138.1| diaminopimelate epimerase [Escherichia coli EC1864]
gi|425382150|ref|ZP_18766130.1| diaminopimelate epimerase [Escherichia coli EC1865]
gi|425388401|ref|ZP_18771944.1| diaminopimelate epimerase [Escherichia coli EC1866]
gi|425395129|ref|ZP_18778220.1| diaminopimelate epimerase [Escherichia coli EC1868]
gi|425401183|ref|ZP_18783873.1| diaminopimelate epimerase [Escherichia coli EC1869]
gi|425407279|ref|ZP_18789484.1| diaminopimelate epimerase [Escherichia coli EC1870]
gi|425413637|ref|ZP_18795383.1| diaminopimelate epimerase [Escherichia coli NE098]
gi|425419952|ref|ZP_18801207.1| diaminopimelate epimerase [Escherichia coli FRIK523]
gi|425424833|ref|ZP_18805978.1| diaminopimelate epimerase [Escherichia coli 0.1288]
gi|425431249|ref|ZP_18811842.1| diaminopimelate epimerase [Escherichia coli 0.1304]
gi|428949657|ref|ZP_19021913.1| diaminopimelate epimerase [Escherichia coli 88.1467]
gi|428955729|ref|ZP_19027503.1| diaminopimelate epimerase [Escherichia coli 88.1042]
gi|428961751|ref|ZP_19033014.1| diaminopimelate epimerase [Escherichia coli 89.0511]
gi|428968355|ref|ZP_19039043.1| diaminopimelate epimerase [Escherichia coli 90.0091]
gi|428974137|ref|ZP_19044432.1| diaminopimelate epimerase [Escherichia coli 90.0039]
gi|428980550|ref|ZP_19050343.1| diaminopimelate epimerase [Escherichia coli 90.2281]
gi|428986301|ref|ZP_19055674.1| diaminopimelate epimerase [Escherichia coli 93.0055]
gi|428992444|ref|ZP_19061416.1| diaminopimelate epimerase [Escherichia coli 93.0056]
gi|428998340|ref|ZP_19066915.1| diaminopimelate epimerase [Escherichia coli 94.0618]
gi|429004728|ref|ZP_19072772.1| diaminopimelate epimerase [Escherichia coli 95.0183]
gi|429010762|ref|ZP_19078146.1| diaminopimelate epimerase [Escherichia coli 95.1288]
gi|429017231|ref|ZP_19084091.1| diaminopimelate epimerase [Escherichia coli 95.0943]
gi|429023076|ref|ZP_19089576.1| diaminopimelate epimerase [Escherichia coli 96.0428]
gi|429029153|ref|ZP_19095110.1| diaminopimelate epimerase [Escherichia coli 96.0427]
gi|429035295|ref|ZP_19100803.1| diaminopimelate epimerase [Escherichia coli 96.0939]
gi|429041405|ref|ZP_19106477.1| diaminopimelate epimerase [Escherichia coli 96.0932]
gi|429047229|ref|ZP_19111925.1| diaminopimelate epimerase [Escherichia coli 96.0107]
gi|429052581|ref|ZP_19117137.1| diaminopimelate epimerase [Escherichia coli 97.0003]
gi|429058138|ref|ZP_19122381.1| diaminopimelate epimerase [Escherichia coli 97.1742]
gi|429063657|ref|ZP_19127614.1| diaminopimelate epimerase [Escherichia coli 97.0007]
gi|429069860|ref|ZP_19133282.1| diaminopimelate epimerase [Escherichia coli 99.0672]
gi|429075637|ref|ZP_19138879.1| diaminopimelate epimerase [Escherichia coli 99.0678]
gi|429080837|ref|ZP_19143962.1| diaminopimelate epimerase [Escherichia coli 99.0713]
gi|429721556|ref|ZP_19256470.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-9450]
gi|429773450|ref|ZP_19305464.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-02030]
gi|429778815|ref|ZP_19310780.1| diaminopimelate epimerase [Escherichia coli O104:H4 str.
11-02033-1]
gi|429782650|ref|ZP_19314574.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-02092]
gi|429788043|ref|ZP_19319929.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-02093]
gi|429794482|ref|ZP_19326322.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-02281]
gi|429800442|ref|ZP_19332230.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-02318]
gi|429804054|ref|ZP_19335810.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-02913]
gi|429808702|ref|ZP_19340417.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-03439]
gi|429814401|ref|ZP_19346071.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-04080]
gi|429819604|ref|ZP_19351233.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-03943]
gi|429829066|ref|ZP_19360044.1| diaminopimelate epimerase [Escherichia coli 96.0109]
gi|429835526|ref|ZP_19365756.1| diaminopimelate epimerase [Escherichia coli 97.0010]
gi|429905924|ref|ZP_19371899.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-9990]
gi|429910057|ref|ZP_19376018.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-9941]
gi|429915957|ref|ZP_19381902.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-4984]
gi|429921005|ref|ZP_19386931.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-5604]
gi|429926813|ref|ZP_19392723.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-4986]
gi|429930744|ref|ZP_19396643.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-4987]
gi|429937286|ref|ZP_19403171.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-4988]
gi|429942965|ref|ZP_19408836.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-5603]
gi|429945644|ref|ZP_19411503.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-6006]
gi|429953207|ref|ZP_19419051.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec12-0465]
gi|429956553|ref|ZP_19422383.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec12-0466]
gi|432355844|ref|ZP_19599104.1| diaminopimelate epimerase [Escherichia coli KTE2]
gi|432360263|ref|ZP_19603474.1| diaminopimelate epimerase [Escherichia coli KTE4]
gi|432365063|ref|ZP_19608216.1| diaminopimelate epimerase [Escherichia coli KTE5]
gi|432367285|ref|ZP_19610397.1| diaminopimelate epimerase [Escherichia coli KTE10]
gi|432379045|ref|ZP_19622025.1| diaminopimelate epimerase [Escherichia coli KTE12]
gi|432394478|ref|ZP_19637294.1| diaminopimelate epimerase [Escherichia coli KTE21]
gi|432404209|ref|ZP_19646951.1| diaminopimelate epimerase [Escherichia coli KTE26]
gi|432419333|ref|ZP_19661922.1| diaminopimelate epimerase [Escherichia coli KTE44]
gi|432428476|ref|ZP_19670955.1| diaminopimelate epimerase [Escherichia coli KTE181]
gi|432443339|ref|ZP_19685671.1| diaminopimelate epimerase [Escherichia coli KTE189]
gi|432448483|ref|ZP_19690778.1| diaminopimelate epimerase [Escherichia coli KTE191]
gi|432452072|ref|ZP_19694326.1| diaminopimelate epimerase [Escherichia coli KTE193]
gi|432463177|ref|ZP_19705307.1| diaminopimelate epimerase [Escherichia coli KTE204]
gi|432473162|ref|ZP_19715197.1| diaminopimelate epimerase [Escherichia coli KTE206]
gi|432478172|ref|ZP_19720156.1| diaminopimelate epimerase [Escherichia coli KTE208]
gi|432483223|ref|ZP_19725170.1| diaminopimelate epimerase [Escherichia coli KTE210]
gi|432487566|ref|ZP_19729472.1| diaminopimelate epimerase [Escherichia coli KTE212]
gi|432491645|ref|ZP_19733503.1| diaminopimelate epimerase [Escherichia coli KTE213]
gi|432502366|ref|ZP_19744114.1| diaminopimelate epimerase [Escherichia coli KTE216]
gi|432520025|ref|ZP_19757203.1| diaminopimelate epimerase [Escherichia coli KTE228]
gi|432528667|ref|ZP_19765737.1| diaminopimelate epimerase [Escherichia coli KTE233]
gi|432531600|ref|ZP_19768622.1| diaminopimelate epimerase [Escherichia coli KTE234]
gi|432540193|ref|ZP_19777083.1| diaminopimelate epimerase [Escherichia coli KTE235]
gi|432555890|ref|ZP_19792605.1| diaminopimelate epimerase [Escherichia coli KTE47]
gi|432566193|ref|ZP_19802748.1| diaminopimelate epimerase [Escherichia coli KTE51]
gi|432576054|ref|ZP_19812521.1| diaminopimelate epimerase [Escherichia coli KTE55]
gi|432578079|ref|ZP_19814524.1| diaminopimelate epimerase [Escherichia coli KTE56]
gi|432590263|ref|ZP_19826613.1| diaminopimelate epimerase [Escherichia coli KTE58]
gi|432600066|ref|ZP_19836334.1| diaminopimelate epimerase [Escherichia coli KTE62]
gi|432619123|ref|ZP_19855220.1| diaminopimelate epimerase [Escherichia coli KTE75]
gi|432629432|ref|ZP_19865396.1| diaminopimelate epimerase [Escherichia coli KTE77]
gi|432633757|ref|ZP_19869673.1| diaminopimelate epimerase [Escherichia coli KTE80]
gi|432634715|ref|ZP_19870612.1| diaminopimelate epimerase [Escherichia coli KTE81]
gi|432643409|ref|ZP_19879229.1| diaminopimelate epimerase [Escherichia coli KTE83]
gi|432663058|ref|ZP_19898685.1| diaminopimelate epimerase [Escherichia coli KTE111]
gi|432668404|ref|ZP_19903972.1| diaminopimelate epimerase [Escherichia coli KTE116]
gi|432672903|ref|ZP_19908420.1| diaminopimelate epimerase [Escherichia coli KTE119]
gi|432676988|ref|ZP_19912427.1| diaminopimelate epimerase [Escherichia coli KTE142]
gi|432682593|ref|ZP_19917943.1| diaminopimelate epimerase [Escherichia coli KTE143]
gi|432687640|ref|ZP_19922927.1| diaminopimelate epimerase [Escherichia coli KTE156]
gi|432689137|ref|ZP_19924402.1| diaminopimelate epimerase [Escherichia coli KTE161]
gi|432696674|ref|ZP_19931864.1| diaminopimelate epimerase [Escherichia coli KTE162]
gi|432706542|ref|ZP_19941635.1| diaminopimelate epimerase [Escherichia coli KTE171]
gi|432715668|ref|ZP_19950691.1| diaminopimelate epimerase [Escherichia coli KTE8]
gi|432716438|ref|ZP_19951451.1| diaminopimelate epimerase [Escherichia coli KTE9]
gi|432734562|ref|ZP_19969383.1| diaminopimelate epimerase [Escherichia coli KTE45]
gi|432739307|ref|ZP_19974034.1| diaminopimelate epimerase [Escherichia coli KTE42]
gi|432752267|ref|ZP_19986843.1| diaminopimelate epimerase [Escherichia coli KTE29]
gi|432756766|ref|ZP_19991309.1| diaminopimelate epimerase [Escherichia coli KTE22]
gi|432761647|ref|ZP_19996134.1| diaminopimelate epimerase [Escherichia coli KTE46]
gi|432762670|ref|ZP_19997131.1| diaminopimelate epimerase [Escherichia coli KTE48]
gi|432768188|ref|ZP_20002577.1| diaminopimelate epimerase [Escherichia coli KTE50]
gi|432772584|ref|ZP_20006894.1| diaminopimelate epimerase [Escherichia coli KTE54]
gi|432780971|ref|ZP_20015186.1| diaminopimelate epimerase [Escherichia coli KTE59]
gi|432789835|ref|ZP_20023961.1| diaminopimelate epimerase [Escherichia coli KTE65]
gi|432795067|ref|ZP_20029138.1| diaminopimelate epimerase [Escherichia coli KTE78]
gi|432796578|ref|ZP_20030611.1| diaminopimelate epimerase [Escherichia coli KTE79]
gi|432808055|ref|ZP_20041967.1| diaminopimelate epimerase [Escherichia coli KTE91]
gi|432811557|ref|ZP_20045412.1| diaminopimelate epimerase [Escherichia coli KTE101]
gi|432818599|ref|ZP_20052320.1| diaminopimelate epimerase [Escherichia coli KTE118]
gi|432824731|ref|ZP_20058394.1| diaminopimelate epimerase [Escherichia coli KTE123]
gi|432829428|ref|ZP_20063042.1| diaminopimelate epimerase [Escherichia coli KTE135]
gi|432836812|ref|ZP_20070331.1| diaminopimelate epimerase [Escherichia coli KTE136]
gi|432841670|ref|ZP_20075124.1| diaminopimelate epimerase [Escherichia coli KTE140]
gi|432866687|ref|ZP_20089024.1| diaminopimelate epimerase [Escherichia coli KTE146]
gi|432878175|ref|ZP_20095624.1| diaminopimelate epimerase [Escherichia coli KTE154]
gi|432889607|ref|ZP_20102879.1| diaminopimelate epimerase [Escherichia coli KTE158]
gi|432915478|ref|ZP_20120733.1| diaminopimelate epimerase [Escherichia coli KTE190]
gi|432923079|ref|ZP_20125785.1| diaminopimelate epimerase [Escherichia coli KTE173]
gi|432929769|ref|ZP_20130721.1| diaminopimelate epimerase [Escherichia coli KTE175]
gi|432931554|ref|ZP_20131586.1| diaminopimelate epimerase [Escherichia coli KTE184]
gi|432943502|ref|ZP_20140337.1| diaminopimelate epimerase [Escherichia coli KTE196]
gi|432951068|ref|ZP_20144811.1| diaminopimelate epimerase [Escherichia coli KTE197]
gi|432964619|ref|ZP_20153689.1| diaminopimelate epimerase [Escherichia coli KTE202]
gi|432965573|ref|ZP_20154494.1| diaminopimelate epimerase [Escherichia coli KTE203]
gi|432983316|ref|ZP_20172082.1| diaminopimelate epimerase [Escherichia coli KTE211]
gi|433002711|ref|ZP_20191219.1| diaminopimelate epimerase [Escherichia coli KTE227]
gi|433010011|ref|ZP_20198421.1| diaminopimelate epimerase [Escherichia coli KTE229]
gi|433016127|ref|ZP_20204453.1| diaminopimelate epimerase [Escherichia coli KTE104]
gi|433021066|ref|ZP_20209141.1| diaminopimelate epimerase [Escherichia coli KTE105]
gi|433025718|ref|ZP_20213683.1| diaminopimelate epimerase [Escherichia coli KTE106]
gi|433035734|ref|ZP_20223421.1| diaminopimelate epimerase [Escherichia coli KTE112]
gi|433045343|ref|ZP_20232815.1| diaminopimelate epimerase [Escherichia coli KTE117]
gi|433050279|ref|ZP_20237598.1| diaminopimelate epimerase [Escherichia coli KTE120]
gi|433055440|ref|ZP_20242591.1| diaminopimelate epimerase [Escherichia coli KTE122]
gi|433065283|ref|ZP_20252183.1| diaminopimelate epimerase [Escherichia coli KTE125]
gi|433070176|ref|ZP_20256936.1| diaminopimelate epimerase [Escherichia coli KTE128]
gi|433080021|ref|ZP_20266535.1| diaminopimelate epimerase [Escherichia coli KTE131]
gi|433094206|ref|ZP_20280453.1| diaminopimelate epimerase [Escherichia coli KTE138]
gi|433098639|ref|ZP_20284803.1| diaminopimelate epimerase [Escherichia coli KTE139]
gi|433108070|ref|ZP_20294027.1| diaminopimelate epimerase [Escherichia coli KTE148]
gi|433132390|ref|ZP_20317809.1| diaminopimelate epimerase [Escherichia coli KTE163]
gi|433137062|ref|ZP_20322384.1| diaminopimelate epimerase [Escherichia coli KTE166]
gi|433156001|ref|ZP_20340924.1| diaminopimelate epimerase [Escherichia coli KTE176]
gi|433160966|ref|ZP_20345779.1| diaminopimelate epimerase [Escherichia coli KTE177]
gi|433165827|ref|ZP_20350551.1| diaminopimelate epimerase [Escherichia coli KTE179]
gi|433170823|ref|ZP_20355437.1| diaminopimelate epimerase [Escherichia coli KTE180]
gi|433175702|ref|ZP_20360204.1| diaminopimelate epimerase [Escherichia coli KTE232]
gi|433180685|ref|ZP_20365055.1| diaminopimelate epimerase [Escherichia coli KTE82]
gi|433195867|ref|ZP_20379832.1| diaminopimelate epimerase [Escherichia coli KTE90]
gi|433200573|ref|ZP_20384453.1| diaminopimelate epimerase [Escherichia coli KTE94]
gi|433205565|ref|ZP_20389306.1| diaminopimelate epimerase [Escherichia coli KTE95]
gi|433325271|ref|ZP_20402415.1| diaminopimelate epimerase [Escherichia coli J96]
gi|433328233|ref|ZP_20404134.1| diaminopimelate epimerase [Escherichia coli J96]
gi|442591336|ref|ZP_21009821.1| Diaminopimelate epimerase [Escherichia coli O10:K5(L):H4 str. ATCC
23506]
gi|442596901|ref|ZP_21014702.1| Diaminopimelate epimerase [Escherichia coli O5:K4(L):H4 str. ATCC
23502]
gi|443619881|ref|YP_007383737.1| diaminopimelate epimerase [Escherichia coli APEC O78]
gi|444927549|ref|ZP_21246804.1| diaminopimelate epimerase [Escherichia coli 09BKT078844]
gi|444933159|ref|ZP_21252157.1| diaminopimelate epimerase [Escherichia coli 99.0814]
gi|444938626|ref|ZP_21257349.1| diaminopimelate epimerase [Escherichia coli 99.0815]
gi|444944230|ref|ZP_21262705.1| diaminopimelate epimerase [Escherichia coli 99.0816]
gi|444949679|ref|ZP_21267960.1| diaminopimelate epimerase [Escherichia coli 99.0839]
gi|444955367|ref|ZP_21273423.1| diaminopimelate epimerase [Escherichia coli 99.0848]
gi|444960734|ref|ZP_21278546.1| diaminopimelate epimerase [Escherichia coli 99.1753]
gi|444966011|ref|ZP_21283562.1| diaminopimelate epimerase [Escherichia coli 99.1775]
gi|444971994|ref|ZP_21289322.1| diaminopimelate epimerase [Escherichia coli 99.1793]
gi|444977284|ref|ZP_21294351.1| diaminopimelate epimerase [Escherichia coli 99.1805]
gi|444982625|ref|ZP_21299521.1| diaminopimelate epimerase [Escherichia coli ATCC 700728]
gi|444988035|ref|ZP_21304802.1| diaminopimelate epimerase [Escherichia coli PA11]
gi|444993414|ref|ZP_21310044.1| diaminopimelate epimerase [Escherichia coli PA19]
gi|444998592|ref|ZP_21315081.1| diaminopimelate epimerase [Escherichia coli PA13]
gi|445004137|ref|ZP_21320516.1| diaminopimelate epimerase [Escherichia coli PA2]
gi|445009555|ref|ZP_21325774.1| diaminopimelate epimerase [Escherichia coli PA47]
gi|445014635|ref|ZP_21330729.1| diaminopimelate epimerase [Escherichia coli PA48]
gi|445020557|ref|ZP_21336511.1| diaminopimelate epimerase [Escherichia coli PA8]
gi|445025918|ref|ZP_21341731.1| diaminopimelate epimerase [Escherichia coli 7.1982]
gi|445031373|ref|ZP_21347028.1| diaminopimelate epimerase [Escherichia coli 99.1781]
gi|445036796|ref|ZP_21352313.1| diaminopimelate epimerase [Escherichia coli 99.1762]
gi|445042474|ref|ZP_21357835.1| diaminopimelate epimerase [Escherichia coli PA35]
gi|445047682|ref|ZP_21362919.1| diaminopimelate epimerase [Escherichia coli 3.4880]
gi|445053247|ref|ZP_21368256.1| diaminopimelate epimerase [Escherichia coli 95.0083]
gi|445061286|ref|ZP_21373792.1| diaminopimelate epimerase [Escherichia coli 99.0670]
gi|450195640|ref|ZP_21892594.1| diaminopimelate epimerase [Escherichia coli SEPT362]
gi|450226851|ref|ZP_21897525.1| diaminopimelate epimerase [Escherichia coli O08]
gi|450252910|ref|ZP_21902284.1| diaminopimelate epimerase [Escherichia coli S17]
gi|452967379|ref|ZP_21965606.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4009]
gi|62288069|sp|P0A6K1.1|DAPF_ECOLI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|62288070|sp|P0A6K2.1|DAPF_ECO57 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|123147484|sp|Q0TAR6.1|DAPF_ECOL5 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|167012034|sp|A7ZU14.1|DAPF_ECO24 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|167012035|sp|A8A6R7.1|DAPF_ECOHS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|189082833|sp|B1IW95.1|DAPF_ECOLC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|226724208|sp|B7MH73.1|DAPF_ECO45 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|226724209|sp|B7NTD3.1|DAPF_ECO7I RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|226724210|sp|B7M611.1|DAPF_ECO8A RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|226724211|sp|B7NFB1.1|DAPF_ECOLU RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|226724212|sp|B1LLY0.1|DAPF_ECOSM RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|226724213|sp|B7LU47.1|DAPF_ESCF3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|229807507|sp|B5YY56.1|DAPF_ECO5E RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|229807508|sp|B1XAH6.1|DAPF_ECODH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|254767104|sp|B7L969.1|DAPF_ECO55 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|259595053|sp|C4ZZ73.1|DAPF_ECOBW RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|85676241|dbj|BAE77491.1| diaminopimelate epimerase [Escherichia coli str. K12 substr. W3110]
gi|87082334|gb|AAC76812.2| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
MG1655]
gi|110345726|gb|ABG71963.1| diaminopimelate epimerase [Escherichia coli 536]
gi|157068966|gb|ABV08221.1| diaminopimelate epimerase [Escherichia coli HS]
gi|157080648|gb|ABV20356.1| diaminopimelate epimerase [Escherichia coli E24377A]
gi|169757096|gb|ACA79795.1| Diaminopimelate epimerase [Escherichia coli ATCC 8739]
gi|169891127|gb|ACB04834.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
DH10B]
gi|170521653|gb|ACB19831.1| diaminopimelate epimerase [Escherichia coli SMS-3-5]
gi|187768871|gb|EDU32715.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4196]
gi|188015408|gb|EDU53530.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4113]
gi|189001420|gb|EDU70406.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4076]
gi|189359167|gb|EDU77586.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4401]
gi|189362571|gb|EDU80990.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4486]
gi|189365964|gb|EDU84380.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4501]
gi|189373358|gb|EDU91774.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC869]
gi|189376683|gb|EDU95099.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC508]
gi|190903839|gb|EDV63553.1| diaminopimelate epimerase [Escherichia coli B7A]
gi|190905443|gb|EDV65073.1| diaminopimelate epimerase [Escherichia coli F11]
gi|192926654|gb|EDV81283.1| diaminopimelate epimerase [Escherichia coli E22]
gi|192958577|gb|EDV89015.1| diaminopimelate epimerase [Escherichia coli E110019]
gi|194412718|gb|EDX29012.1| diaminopimelate epimerase [Escherichia coli B171]
gi|194422464|gb|EDX38463.1| diaminopimelate epimerase [Escherichia coli 101-1]
gi|208729510|gb|EDZ79111.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4206]
gi|208733367|gb|EDZ82054.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4045]
gi|208740320|gb|EDZ88002.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4042]
gi|209160778|gb|ACI38211.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. EC4115]
gi|217322260|gb|EEC30684.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14588]
gi|218354259|emb|CAV00935.1| diaminopimelate epimerase [Escherichia coli 55989]
gi|218358508|emb|CAQ91155.1| diaminopimelate epimerase [Escherichia fergusonii ATCC 35469]
gi|218363141|emb|CAR00782.1| diaminopimelate epimerase [Escherichia coli IAI1]
gi|218367642|emb|CAR05427.1| diaminopimelate epimerase [Escherichia coli S88]
gi|218371263|emb|CAR19097.1| diaminopimelate epimerase [Escherichia coli IAI39]
gi|218434540|emb|CAR15467.1| diaminopimelate epimerase [Escherichia coli UMN026]
gi|222035507|emb|CAP78252.1| Diaminopimelate epimerase [Escherichia coli LF82]
gi|238860759|gb|ACR62757.1| diaminopimelate epimerase [Escherichia coli BW2952]
gi|242379339|emb|CAQ34151.1| diaminopimelate epimerase [Escherichia coli BL21(DE3)]
gi|253326611|gb|ACT31213.1| diaminopimelate epimerase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253975652|gb|ACT41323.1| diaminopimelate epimerase [Escherichia coli B str. REL606]
gi|253979808|gb|ACT45478.1| diaminopimelate epimerase [Escherichia coli BL21(DE3)]
gi|254595205|gb|ACT74566.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. TW14359]
gi|257756434|dbj|BAI27936.1| diaminopimelate epimerase DapF [Escherichia coli O26:H11 str.
11368]
gi|257761562|dbj|BAI33059.1| diaminopimelate epimerase DapF [Escherichia coli O103:H2 str.
12009]
gi|257766890|dbj|BAI38385.1| diaminopimelate epimerase DapF [Escherichia coli O111:H- str.
11128]
gi|260451348|gb|ACX41770.1| Diaminopimelate epimerase [Escherichia coli DH1]
gi|284923917|emb|CBG37016.1| diaminopimelate epimerase [Escherichia coli 042]
gi|290765096|gb|ADD59057.1| Diaminopimelate epimerase [Escherichia coli O55:H7 str. CB9615]
gi|291321505|gb|EFE60943.1| diaminopimelate epimerase [Escherichia coli B088]
gi|291425547|gb|EFE98585.1| dapF [Escherichia coli FVEC1412]
gi|291468199|gb|EFF10696.1| diaminopimelate epimerase [Escherichia coli B354]
gi|294492006|gb|ADE90762.1| diaminopimelate epimerase [Escherichia coli IHE3034]
gi|298276412|gb|EFI17931.1| diaminopimelate epimerase [Escherichia coli FVEC1302]
gi|306906598|gb|EFN37110.1| diaminopimelate epimerase [Escherichia coli W]
gi|307628872|gb|ADN73176.1| diaminopimelate epimerase [Escherichia coli UM146]
gi|308927631|gb|EFP73100.1| diaminopimelate epimerase [Shigella dysenteriae 1617]
gi|309704244|emb|CBJ03592.1| diaminopimelate epimerase [Escherichia coli ETEC H10407]
gi|310334281|gb|EFQ00486.1| diaminopimelate epimerase [Escherichia coli 1827-70]
gi|312948362|gb|ADR29189.1| diaminopimelate epimerase [Escherichia coli O83:H1 str. NRG 857C]
gi|315063101|gb|ADT77428.1| diaminopimelate epimerase [Escherichia coli W]
gi|315138386|dbj|BAJ45545.1| diaminopimelate epimerase [Escherichia coli DH1]
gi|315618493|gb|EFU99079.1| diaminopimelate epimerase [Escherichia coli 3431]
gi|320176051|gb|EFW51120.1| Diaminopimelate epimerase [Shigella dysenteriae CDC 74-1112]
gi|320185470|gb|EFW60239.1| Diaminopimelate epimerase [Shigella flexneri CDC 796-83]
gi|320191098|gb|EFW65748.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. EC1212]
gi|320197618|gb|EFW72230.1| Diaminopimelate epimerase [Escherichia coli WV_060327]
gi|320198484|gb|EFW73085.1| Diaminopimelate epimerase [Escherichia coli EC4100B]
gi|320644677|gb|EFX13727.1| diaminopimelate epimerase [Escherichia coli O157:H- str. 493-89]
gi|320650002|gb|EFX18505.1| diaminopimelate epimerase [Escherichia coli O157:H- str. H 2687]
gi|320660974|gb|EFX28417.1| diaminopimelate epimerase [Escherichia coli O55:H7 str. USDA 5905]
gi|320666098|gb|EFX33112.1| diaminopimelate epimerase [Escherichia coli O157:H7 str. LSU-61]
gi|323155215|gb|EFZ41399.1| diaminopimelate epimerase [Escherichia coli EPECa14]
gi|323161127|gb|EFZ47045.1| diaminopimelate epimerase [Escherichia coli E128010]
gi|323173424|gb|EFZ59053.1| diaminopimelate epimerase [Escherichia coli LT-68]
gi|323177822|gb|EFZ63406.1| diaminopimelate epimerase [Escherichia coli OK1180]
gi|323189765|gb|EFZ75044.1| diaminopimelate epimerase [Escherichia coli RN587/1]
gi|323380835|gb|ADX53103.1| diaminopimelate epimerase [Escherichia coli KO11FL]
gi|323949307|gb|EGB45197.1| diaminopimelate epimerase [Escherichia coli H252]
gi|326344265|gb|EGD68025.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. 1125]
gi|326347907|gb|EGD71621.1| Diaminopimelate epimerase [Escherichia coli O157:H7 str. 1044]
gi|330908109|gb|EGH36628.1| diaminopimelate epimerase [Escherichia coli AA86]
gi|332089026|gb|EGI94137.1| diaminopimelate epimerase [Shigella boydii 3594-74]
gi|332345788|gb|AEE59122.1| diaminopimelate epimerase DapF [Escherichia coli UMNK88]
gi|338768027|gb|EGP22833.1| Diaminopimelate epimerase [Escherichia coli PCN033]
gi|339417539|gb|AEJ59211.1| diaminopimelate epimerase [Escherichia coli UMNF18]
gi|340731818|gb|EGR60957.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 01-09591]
gi|340737963|gb|EGR72216.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. LB226692]
gi|341921427|gb|EGT71027.1| dapF [Escherichia coli O104:H4 str. C227-11]
gi|342362583|gb|EGU26700.1| diaminopimelate epimerase [Escherichia coli XH140A]
gi|344192669|gb|EGV46758.1| diaminopimelate epimerase [Escherichia coli XH001]
gi|345331084|gb|EGW63545.1| diaminopimelate epimerase [Escherichia coli STEC_C165-02]
gi|345331386|gb|EGW63846.1| diaminopimelate epimerase [Escherichia coli 2534-86]
gi|345333766|gb|EGW66213.1| diaminopimelate epimerase [Escherichia coli STEC_B2F1]
gi|345347235|gb|EGW79549.1| diaminopimelate epimerase [Escherichia coli STEC_94C]
gi|345369543|gb|EGX01526.1| diaminopimelate epimerase [Escherichia coli STEC_MHI813]
gi|345369697|gb|EGX01679.1| diaminopimelate epimerase [Escherichia coli G58-1]
gi|345372033|gb|EGX04000.1| diaminopimelate epimerase [Escherichia coli STEC_H.1.8]
gi|345384829|gb|EGX14687.1| diaminopimelate epimerase [Escherichia coli STEC_S1191]
gi|345389783|gb|EGX19584.1| diaminopimelate epimerase [Escherichia coli TX1999]
gi|354857591|gb|EHF18045.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. C236-11]
gi|354861143|gb|EHF21583.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. C227-11]
gi|354862951|gb|EHF23387.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 04-8351]
gi|354870547|gb|EHF30950.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 09-7901]
gi|354876400|gb|EHF36761.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-3677]
gi|354885247|gb|EHF45551.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-4404]
gi|354888647|gb|EHF48902.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-4522]
gi|354892127|gb|EHF52340.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-4623]
gi|354904392|gb|EHF64485.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-4632
C1]
gi|354907653|gb|EHF67711.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-4632
C2]
gi|354910029|gb|EHF70058.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-4632
C3]
gi|354912543|gb|EHF72543.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-4632
C4]
gi|354920338|gb|EHF80273.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-4632
C5]
gi|355349497|gb|EHF98702.1| diaminopimelate epimerase [Escherichia coli cloneA_i1]
gi|359333942|dbj|BAL40389.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
MDS42]
gi|371591782|gb|EHN80721.1| diaminopimelate epimerase [Escherichia coli H494]
gi|371602163|gb|EHN90874.1| diaminopimelate epimerase [Escherichia coli H397]
gi|371602942|gb|EHN91624.1| diaminopimelate epimerase [Escherichia coli B093]
gi|371609574|gb|EHN98111.1| diaminopimelate epimerase [Escherichia coli E101]
gi|373243568|gb|EHP63070.1| diaminopimelate epimerase [Escherichia coli 4_1_47FAA]
gi|374361251|gb|AEZ42958.1| diaminopimelate epimerase [Escherichia coli O55:H7 str. RM12579]
gi|375320128|gb|EHS66132.1| diaminopimelate epimerase [Escherichia coli O157:H43 str. T22]
gi|377889367|gb|EHU53831.1| diaminopimelate epimerase [Escherichia coli DEC3B]
gi|377900952|gb|EHU65276.1| diaminopimelate epimerase [Escherichia coli DEC3A]
gi|377901898|gb|EHU66208.1| diaminopimelate epimerase [Escherichia coli DEC3C]
gi|377903753|gb|EHU68043.1| diaminopimelate epimerase [Escherichia coli DEC3D]
gi|377906387|gb|EHU70630.1| diaminopimelate epimerase [Escherichia coli DEC3E]
gi|377916994|gb|EHU81063.1| diaminopimelate epimerase [Escherichia coli DEC3F]
gi|377922991|gb|EHU86962.1| diaminopimelate epimerase [Escherichia coli DEC4A]
gi|377926658|gb|EHU90588.1| diaminopimelate epimerase [Escherichia coli DEC4B]
gi|377937311|gb|EHV01092.1| diaminopimelate epimerase [Escherichia coli DEC4D]
gi|377937837|gb|EHV01610.1| diaminopimelate epimerase [Escherichia coli DEC4C]
gi|377952249|gb|EHV15845.1| diaminopimelate epimerase [Escherichia coli DEC4F]
gi|377957353|gb|EHV20888.1| diaminopimelate epimerase [Escherichia coli DEC5A]
gi|377960967|gb|EHV24442.1| diaminopimelate epimerase [Escherichia coli DEC5B]
gi|377969382|gb|EHV32760.1| diaminopimelate epimerase [Escherichia coli DEC5C]
gi|377970386|gb|EHV33748.1| diaminopimelate epimerase [Escherichia coli DEC5D]
gi|377980222|gb|EHV43488.1| diaminopimelate epimerase [Escherichia coli DEC5E]
gi|377988756|gb|EHV51931.1| diaminopimelate epimerase [Escherichia coli DEC6B]
gi|377989102|gb|EHV52271.1| diaminopimelate epimerase [Escherichia coli DEC6A]
gi|378006255|gb|EHV69241.1| diaminopimelate epimerase [Escherichia coli DEC6E]
gi|378010062|gb|EHV73009.1| diaminopimelate epimerase [Escherichia coli DEC7A]
gi|378020946|gb|EHV83674.1| diaminopimelate epimerase [Escherichia coli DEC7C]
gi|378023949|gb|EHV86614.1| diaminopimelate epimerase [Escherichia coli DEC7D]
gi|378028444|gb|EHV91062.1| diaminopimelate epimerase [Escherichia coli DEC7B]
gi|378035114|gb|EHV97676.1| diaminopimelate epimerase [Escherichia coli DEC7E]
gi|378042917|gb|EHW05361.1| diaminopimelate epimerase [Escherichia coli DEC8A]
gi|378043203|gb|EHW05640.1| diaminopimelate epimerase [Escherichia coli DEC8B]
gi|378048168|gb|EHW10523.1| diaminopimelate epimerase [Escherichia coli DEC8C]
gi|378057726|gb|EHW19949.1| diaminopimelate epimerase [Escherichia coli DEC8D]
gi|378068446|gb|EHW30547.1| diaminopimelate epimerase [Escherichia coli DEC9A]
gi|378073398|gb|EHW35449.1| diaminopimelate epimerase [Escherichia coli DEC9B]
gi|378074555|gb|EHW36590.1| diaminopimelate epimerase [Escherichia coli DEC8E]
gi|378078644|gb|EHW40625.1| diaminopimelate epimerase [Escherichia coli DEC9C]
gi|378086507|gb|EHW48382.1| diaminopimelate epimerase [Escherichia coli DEC9D]
gi|378088971|gb|EHW50820.1| diaminopimelate epimerase [Escherichia coli DEC9E]
gi|378096910|gb|EHW58676.1| diaminopimelate epimerase [Escherichia coli DEC10A]
gi|378102167|gb|EHW63849.1| diaminopimelate epimerase [Escherichia coli DEC10B]
gi|378119732|gb|EHW81221.1| diaminopimelate epimerase [Escherichia coli DEC10C]
gi|378121902|gb|EHW83350.1| diaminopimelate epimerase [Escherichia coli DEC10D]
gi|378124135|gb|EHW85547.1| diaminopimelate epimerase [Escherichia coli DEC10E]
gi|378124639|gb|EHW86044.1| diaminopimelate epimerase [Escherichia coli DEC11A]
gi|378125206|gb|EHW86608.1| diaminopimelate epimerase [Escherichia coli DEC10F]
gi|378138166|gb|EHW99425.1| diaminopimelate epimerase [Escherichia coli DEC11B]
gi|378144039|gb|EHX05215.1| diaminopimelate epimerase [Escherichia coli DEC11D]
gi|378146082|gb|EHX07236.1| diaminopimelate epimerase [Escherichia coli DEC11C]
gi|378161459|gb|EHX22436.1| diaminopimelate epimerase [Escherichia coli DEC12B]
gi|378164580|gb|EHX25522.1| diaminopimelate epimerase [Escherichia coli DEC12A]
gi|378165449|gb|EHX26383.1| diaminopimelate epimerase [Escherichia coli DEC12C]
gi|378179343|gb|EHX40073.1| diaminopimelate epimerase [Escherichia coli DEC12D]
gi|378182439|gb|EHX43091.1| diaminopimelate epimerase [Escherichia coli DEC13A]
gi|378182527|gb|EHX43178.1| diaminopimelate epimerase [Escherichia coli DEC12E]
gi|378195710|gb|EHX56205.1| diaminopimelate epimerase [Escherichia coli DEC13B]
gi|378198122|gb|EHX58594.1| diaminopimelate epimerase [Escherichia coli DEC13D]
gi|378209558|gb|EHX69928.1| diaminopimelate epimerase [Escherichia coli DEC13E]
gi|378212171|gb|EHX72495.1| diaminopimelate epimerase [Escherichia coli DEC14A]
gi|378227641|gb|EHX87810.1| diaminopimelate epimerase [Escherichia coli DEC14D]
gi|378233781|gb|EHX93865.1| diaminopimelate epimerase [Escherichia coli DEC15A]
gi|378239930|gb|EHX99907.1| diaminopimelate epimerase [Escherichia coli DEC15B]
gi|378242813|gb|EHY02764.1| diaminopimelate epimerase [Escherichia coli DEC15C]
gi|378250889|gb|EHY10791.1| diaminopimelate epimerase [Escherichia coli DEC15D]
gi|378255616|gb|EHY15473.1| diaminopimelate epimerase [Escherichia coli DEC15E]
gi|380346182|gb|EIA34481.1| diaminopimelate epimerase [Escherichia coli SCI-07]
gi|383105241|gb|AFG42750.1| Diaminopimelate epimerase [Escherichia coli P12b]
gi|383390838|gb|AFH15796.1| diaminopimelate epimerase [Escherichia coli KO11FL]
gi|383407409|gb|AFH13652.1| diaminopimelate epimerase [Escherichia coli W]
gi|385154756|gb|EIF16765.1| diaminopimelate epimerase [Escherichia coli O32:H37 str. P4]
gi|385537521|gb|EIF84392.1| diaminopimelate epimerase [Escherichia coli M919]
gi|385708470|gb|EIG45482.1| diaminopimelate epimerase [Escherichia coli H730]
gi|385709031|gb|EIG46033.1| diaminopimelate epimerase [Escherichia coli B799]
gi|386120378|gb|EIG69007.1| diaminopimelate epimerase [Escherichia sp. 4_1_40B]
gi|386150331|gb|EIH01620.1| diaminopimelate epimerase [Escherichia coli 5.0588]
gi|386155271|gb|EIH11626.1| diaminopimelate epimerase [Escherichia coli 97.0259]
gi|386161040|gb|EIH22843.1| diaminopimelate epimerase [Escherichia coli 1.2264]
gi|386167174|gb|EIH33694.1| diaminopimelate epimerase [Escherichia coli 96.0497]
gi|386170380|gb|EIH42440.1| diaminopimelate epimerase [Escherichia coli 99.0741]
gi|386178464|gb|EIH55943.1| diaminopimelate epimerase [Escherichia coli 3.2608]
gi|386182965|gb|EIH65721.1| diaminopimelate epimerase [Escherichia coli 93.0624]
gi|386186753|gb|EIH75576.1| diaminopimelate epimerase [Escherichia coli 4.0522]
gi|386193295|gb|EIH87591.1| diaminopimelate epimerase [Escherichia coli JB1-95]
gi|386201369|gb|EII00360.1| diaminopimelate epimerase [Escherichia coli 96.154]
gi|386211926|gb|EII22377.1| diaminopimelate epimerase [Escherichia coli 9.0111]
gi|386219769|gb|EII36233.1| diaminopimelate epimerase [Escherichia coli 4.0967]
gi|386221203|gb|EII43647.1| diaminopimelate epimerase [Escherichia coli 2.3916]
gi|386228853|gb|EII56209.1| diaminopimelate epimerase [Escherichia coli 3.3884]
gi|386234321|gb|EII66299.1| diaminopimelate epimerase [Escherichia coli 2.4168]
gi|386237931|gb|EII74871.1| diaminopimelate epimerase [Escherichia coli 3.2303]
gi|386244928|gb|EII86658.1| diaminopimelate epimerase [Escherichia coli 3003]
gi|386251201|gb|EII97368.1| diaminopimelate epimerase [Escherichia coli TW07793]
gi|386252267|gb|EIJ01959.1| diaminopimelate epimerase [Escherichia coli B41]
gi|386260418|gb|EIJ15892.1| diaminopimelate epimerase [Escherichia coli 900105 (10e)]
gi|386798495|gb|AFJ31529.1| diaminopimelate epimerase [Escherichia coli Xuzhou21]
gi|388342932|gb|EIL08933.1| diaminopimelate epimerase [Escherichia coli O103:H25 str. CVM9340]
gi|388343357|gb|EIL09321.1| diaminopimelate epimerase [Escherichia coli O103:H2 str. CVM9450]
gi|388350568|gb|EIL15927.1| diaminopimelate epimerase [Escherichia coli O111:H11 str. CVM9534]
gi|388359859|gb|EIL24115.1| diaminopimelate epimerase [Escherichia coli O111:H8 str. CVM9570]
gi|388366209|gb|EIL29955.1| diaminopimelate epimerase [Escherichia coli O111:H8 str. CVM9574]
gi|388370961|gb|EIL34454.1| diaminopimelate epimerase [Escherichia coli O111:H11 str. CVM9545]
gi|388373597|gb|EIL36845.1| diaminopimelate epimerase [Escherichia coli O26:H11 str. CVM9942]
gi|388380827|gb|EIL43409.1| diaminopimelate epimerase [Escherichia coli O26:H11 str. CVM10026]
gi|388382778|gb|EIL44620.1| diaminopimelate epimerase [Escherichia coli 541-15]
gi|388389325|gb|EIL50859.1| diaminopimelate epimerase [Escherichia coli KD2]
gi|388391438|gb|EIL52905.1| diaminopimelate epimerase [Escherichia coli KD1]
gi|388409145|gb|EIL69467.1| diaminopimelate epimerase [Escherichia coli 541-1]
gi|388409960|gb|EIL70221.1| diaminopimelate epimerase [Escherichia coli 75]
gi|388421309|gb|EIL80926.1| diaminopimelate epimerase [Escherichia coli HM605]
gi|388422579|gb|EIL82153.1| diaminopimelate epimerase [Escherichia coli CUMT8]
gi|390637158|gb|EIN16714.1| diaminopimelate epimerase [Escherichia coli FRIK1996]
gi|390637589|gb|EIN17132.1| diaminopimelate epimerase [Escherichia coli FDA505]
gi|390638292|gb|EIN17805.1| diaminopimelate epimerase [Escherichia coli FDA517]
gi|390655839|gb|EIN33751.1| diaminopimelate epimerase [Escherichia coli FRIK1985]
gi|390656649|gb|EIN34509.1| diaminopimelate epimerase [Escherichia coli 93-001]
gi|390659515|gb|EIN37277.1| diaminopimelate epimerase [Escherichia coli FRIK1990]
gi|390674032|gb|EIN50240.1| diaminopimelate epimerase [Escherichia coli PA3]
gi|390677325|gb|EIN53380.1| diaminopimelate epimerase [Escherichia coli PA5]
gi|390680698|gb|EIN56525.1| diaminopimelate epimerase [Escherichia coli PA9]
gi|390691959|gb|EIN66679.1| diaminopimelate epimerase [Escherichia coli PA10]
gi|390696252|gb|EIN70741.1| diaminopimelate epimerase [Escherichia coli PA14]
gi|390697385|gb|EIN71805.1| diaminopimelate epimerase [Escherichia coli PA15]
gi|390711222|gb|EIN84205.1| diaminopimelate epimerase [Escherichia coli PA22]
gi|390717556|gb|EIN90338.1| diaminopimelate epimerase [Escherichia coli PA24]
gi|390718193|gb|EIN90951.1| diaminopimelate epimerase [Escherichia coli PA25]
gi|390724312|gb|EIN96872.1| diaminopimelate epimerase [Escherichia coli PA28]
gi|390736902|gb|EIO08218.1| diaminopimelate epimerase [Escherichia coli PA31]
gi|390737512|gb|EIO08800.1| diaminopimelate epimerase [Escherichia coli PA32]
gi|390741179|gb|EIO12269.1| diaminopimelate epimerase [Escherichia coli PA33]
gi|390758476|gb|EIO27920.1| diaminopimelate epimerase [Escherichia coli PA39]
gi|390761911|gb|EIO31182.1| diaminopimelate epimerase [Escherichia coli PA41]
gi|390764846|gb|EIO34041.1| diaminopimelate epimerase [Escherichia coli PA42]
gi|390779125|gb|EIO46862.1| diaminopimelate epimerase [Escherichia coli TW06591]
gi|390786098|gb|EIO53626.1| diaminopimelate epimerase [Escherichia coli TW07945]
gi|390796606|gb|EIO63877.1| diaminopimelate epimerase [Escherichia coli TW10246]
gi|390800062|gb|EIO67175.1| diaminopimelate epimerase [Escherichia coli TW09098]
gi|390803147|gb|EIO70171.1| diaminopimelate epimerase [Escherichia coli TW11039]
gi|390804539|gb|EIO71505.1| diaminopimelate epimerase [Escherichia coli TW09109]
gi|390813637|gb|EIO80247.1| diaminopimelate epimerase [Escherichia coli TW10119]
gi|390821958|gb|EIO88110.1| diaminopimelate epimerase [Escherichia coli TW09195]
gi|390822471|gb|EIO88590.1| diaminopimelate epimerase [Escherichia coli EC4203]
gi|390827579|gb|EIO93335.1| diaminopimelate epimerase [Escherichia coli EC4196]
gi|390840745|gb|EIP04748.1| diaminopimelate epimerase [Escherichia coli TW14313]
gi|390842849|gb|EIP06682.1| diaminopimelate epimerase [Escherichia coli TW14301]
gi|390847743|gb|EIP11267.1| diaminopimelate epimerase [Escherichia coli EC4421]
gi|390858200|gb|EIP20608.1| diaminopimelate epimerase [Escherichia coli EC4422]
gi|390862488|gb|EIP24671.1| diaminopimelate epimerase [Escherichia coli EC4013]
gi|390866617|gb|EIP28567.1| diaminopimelate epimerase [Escherichia coli EC4402]
gi|390874888|gb|EIP35972.1| diaminopimelate epimerase [Escherichia coli EC4439]
gi|390880246|gb|EIP40938.1| diaminopimelate epimerase [Escherichia coli EC4436]
gi|390890108|gb|EIP49794.1| diaminopimelate epimerase [Escherichia coli EC4437]
gi|390897861|gb|EIP57161.1| diaminopimelate epimerase [Escherichia coli EC1738]
gi|390905804|gb|EIP64729.1| diaminopimelate epimerase [Escherichia coli EC1734]
gi|390915612|gb|EIP74121.1| diaminopimelate epimerase [Escherichia coli EC1845]
gi|390915813|gb|EIP74313.1| diaminopimelate epimerase [Escherichia coli EC1863]
gi|391245531|gb|EIQ04798.1| diaminopimelate epimerase [Shigella flexneri CCH060]
gi|391273131|gb|EIQ31959.1| diaminopimelate epimerase [Shigella boydii 4444-74]
gi|391277437|gb|EIQ36181.1| diaminopimelate epimerase [Shigella sonnei 3226-85]
gi|391280605|gb|EIQ39272.1| diaminopimelate epimerase [Shigella sonnei 3233-85]
gi|391291628|gb|EIQ50008.1| diaminopimelate epimerase [Shigella sonnei 4822-66]
gi|391298030|gb|EIQ56055.1| diaminopimelate epimerase [Shigella dysenteriae 225-75]
gi|391301561|gb|EIQ59447.1| diaminopimelate epimerase [Escherichia coli EPECa12]
gi|391310023|gb|EIQ67686.1| diaminopimelate epimerase [Escherichia coli EPEC C342-62]
gi|394389860|gb|EJE66958.1| diaminopimelate epimerase [Escherichia coli O111:H8 str. CVM9602]
gi|394391234|gb|EJE68120.1| diaminopimelate epimerase [Escherichia coli O26:H11 str. CVM10224]
gi|394397272|gb|EJE73551.1| diaminopimelate epimerase [Escherichia coli O111:H8 str. CVM9634]
gi|394405590|gb|EJE80736.1| diaminopimelate epimerase [Escherichia coli O111:H11 str. CVM9553]
gi|394411632|gb|EJE85855.1| diaminopimelate epimerase [Escherichia coli O26:H11 str. CVM10021]
gi|394423751|gb|EJE96966.1| diaminopimelate epimerase [Escherichia coli O111:H11 str. CVM9455]
gi|394430825|gb|EJF03103.1| diaminopimelate epimerase [Escherichia coli O26:H11 str. CVM10030]
gi|394431764|gb|EJF03927.1| diaminopimelate epimerase [Escherichia coli O26:H11 str. CVM9952]
gi|397783029|gb|EJK93891.1| diaminopimelate epimerase [Escherichia coli STEC_O31]
gi|397895020|gb|EJL11455.1| diaminopimelate epimerase [Shigella sonnei str. Moseley]
gi|404290013|gb|EEH70740.2| diaminopimelate epimerase [Escherichia sp. 1_1_43]
gi|404335360|gb|EJZ61830.1| diaminopimelate epimerase [Shigella flexneri 1485-80]
gi|406780168|gb|AFS59592.1| diaminopimelate epimerase [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407056757|gb|AFS76808.1| diaminopimelate epimerase [Escherichia coli O104:H4 str.
2011C-3493]
gi|407062850|gb|AFS83897.1| diaminopimelate epimerase [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408061404|gb|EKG95923.1| diaminopimelate epimerase [Escherichia coli PA7]
gi|408063904|gb|EKG98391.1| diaminopimelate epimerase [Escherichia coli FRIK920]
gi|408080214|gb|EKH14298.1| diaminopimelate epimerase [Escherichia coli FDA507]
gi|408088399|gb|EKH21771.1| diaminopimelate epimerase [Escherichia coli FDA504]
gi|408094571|gb|EKH27588.1| diaminopimelate epimerase [Escherichia coli FRIK1999]
gi|408100754|gb|EKH33236.1| diaminopimelate epimerase [Escherichia coli FRIK1997]
gi|408112472|gb|EKH44122.1| diaminopimelate epimerase [Escherichia coli NE037]
gi|408124975|gb|EKH55615.1| diaminopimelate epimerase [Escherichia coli PA4]
gi|408134778|gb|EKH64594.1| diaminopimelate epimerase [Escherichia coli PA23]
gi|408136803|gb|EKH66533.1| diaminopimelate epimerase [Escherichia coli PA49]
gi|408143738|gb|EKH73012.1| diaminopimelate epimerase [Escherichia coli PA45]
gi|408152118|gb|EKH80567.1| diaminopimelate epimerase [Escherichia coli TT12B]
gi|408157161|gb|EKH85327.1| diaminopimelate epimerase [Escherichia coli MA6]
gi|408161311|gb|EKH89277.1| diaminopimelate epimerase [Escherichia coli 5905]
gi|408170364|gb|EKH97573.1| diaminopimelate epimerase [Escherichia coli CB7326]
gi|408177253|gb|EKI04068.1| diaminopimelate epimerase [Escherichia coli EC96038]
gi|408180257|gb|EKI06882.1| diaminopimelate epimerase [Escherichia coli 5412]
gi|408189617|gb|EKI15328.1| diaminopimelate epimerase [Escherichia coli TW15901]
gi|408197362|gb|EKI22625.1| diaminopimelate epimerase [Escherichia coli ARS4.2123]
gi|408197805|gb|EKI23056.1| diaminopimelate epimerase [Escherichia coli TW00353]
gi|408211279|gb|EKI35831.1| diaminopimelate epimerase [Escherichia coli PA38]
gi|408223532|gb|EKI47301.1| diaminopimelate epimerase [Escherichia coli EC1735]
gi|408224951|gb|EKI48648.1| diaminopimelate epimerase [Escherichia coli N1]
gi|408235013|gb|EKI58000.1| diaminopimelate epimerase [Escherichia coli EC1736]
gi|408237784|gb|EKI60630.1| diaminopimelate epimerase [Escherichia coli EC1737]
gi|408243010|gb|EKI65558.1| diaminopimelate epimerase [Escherichia coli EC1846]
gi|408251837|gb|EKI73551.1| diaminopimelate epimerase [Escherichia coli EC1847]
gi|408256130|gb|EKI77523.1| diaminopimelate epimerase [Escherichia coli EC1848]
gi|408262786|gb|EKI83700.1| diaminopimelate epimerase [Escherichia coli EC1849]
gi|408271039|gb|EKI91188.1| diaminopimelate epimerase [Escherichia coli EC1850]
gi|408274170|gb|EKI94195.1| diaminopimelate epimerase [Escherichia coli EC1856]
gi|408282180|gb|EKJ01518.1| diaminopimelate epimerase [Escherichia coli EC1862]
gi|408288458|gb|EKJ07281.1| diaminopimelate epimerase [Escherichia coli EC1864]
gi|408293086|gb|EKJ11550.1| diaminopimelate epimerase [Escherichia coli EC1865]
gi|408303353|gb|EKJ20815.1| diaminopimelate epimerase [Escherichia coli EC1868]
gi|408304503|gb|EKJ21928.1| diaminopimelate epimerase [Escherichia coli EC1866]
gi|408315839|gb|EKJ32138.1| diaminopimelate epimerase [Escherichia coli EC1869]
gi|408321292|gb|EKJ37331.1| diaminopimelate epimerase [Escherichia coli EC1870]
gi|408323026|gb|EKJ38995.1| diaminopimelate epimerase [Escherichia coli NE098]
gi|408333996|gb|EKJ48904.1| diaminopimelate epimerase [Escherichia coli FRIK523]
gi|408340396|gb|EKJ54891.1| diaminopimelate epimerase [Escherichia coli 0.1288]
gi|408341933|gb|EKJ56369.1| diaminopimelate epimerase [Escherichia coli 0.1304]
gi|408457421|gb|EKJ81217.1| diaminopimelate epimerase [Escherichia coli AD30]
gi|408544787|gb|EKK22233.1| diaminopimelate epimerase [Escherichia coli 5.2239]
gi|408545320|gb|EKK22756.1| diaminopimelate epimerase [Escherichia coli 3.4870]
gi|408545841|gb|EKK23264.1| diaminopimelate epimerase [Escherichia coli 6.0172]
gi|408563217|gb|EKK39357.1| diaminopimelate epimerase [Escherichia coli 8.0566]
gi|408564360|gb|EKK40470.1| diaminopimelate epimerase [Escherichia coli 8.0569]
gi|408575648|gb|EKK51301.1| diaminopimelate epimerase [Escherichia coli 10.0833]
gi|408578559|gb|EKK54076.1| diaminopimelate epimerase [Escherichia coli 8.2524]
gi|408588302|gb|EKK62885.1| diaminopimelate epimerase [Escherichia coli 10.0869]
gi|408593294|gb|EKK67618.1| diaminopimelate epimerase [Escherichia coli 88.0221]
gi|408598986|gb|EKK72918.1| diaminopimelate epimerase [Escherichia coli 8.0416]
gi|408608671|gb|EKK82057.1| diaminopimelate epimerase [Escherichia coli 10.0821]
gi|421936932|gb|EKT94576.1| diaminopimelate epimerase [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421945956|gb|EKU03126.1| diaminopimelate epimerase [Escherichia coli O111:H8 str.
CFSAN001632]
gi|421948395|gb|EKU05415.1| diaminopimelate epimerase [Escherichia coli O26:H11 str.
CFSAN001629]
gi|427201302|gb|EKV71695.1| diaminopimelate epimerase [Escherichia coli 88.1042]
gi|427201441|gb|EKV71823.1| diaminopimelate epimerase [Escherichia coli 89.0511]
gi|427204719|gb|EKV74991.1| diaminopimelate epimerase [Escherichia coli 88.1467]
gi|427217571|gb|EKV86629.1| diaminopimelate epimerase [Escherichia coli 90.0091]
gi|427221277|gb|EKV90138.1| diaminopimelate epimerase [Escherichia coli 90.2281]
gi|427224256|gb|EKV92973.1| diaminopimelate epimerase [Escherichia coli 90.0039]
gi|427237722|gb|EKW05246.1| diaminopimelate epimerase [Escherichia coli 93.0056]
gi|427238106|gb|EKW05626.1| diaminopimelate epimerase [Escherichia coli 93.0055]
gi|427242472|gb|EKW09879.1| diaminopimelate epimerase [Escherichia coli 94.0618]
gi|427255789|gb|EKW22030.1| diaminopimelate epimerase [Escherichia coli 95.0183]
gi|427257409|gb|EKW23535.1| diaminopimelate epimerase [Escherichia coli 95.0943]
gi|427258140|gb|EKW24243.1| diaminopimelate epimerase [Escherichia coli 95.1288]
gi|427273037|gb|EKW37737.1| diaminopimelate epimerase [Escherichia coli 96.0428]
gi|427274891|gb|EKW39529.1| diaminopimelate epimerase [Escherichia coli 96.0427]
gi|427280512|gb|EKW44870.1| diaminopimelate epimerase [Escherichia coli 96.0939]
gi|427288987|gb|EKW52584.1| diaminopimelate epimerase [Escherichia coli 96.0932]
gi|427295776|gb|EKW58858.1| diaminopimelate epimerase [Escherichia coli 96.0107]
gi|427297618|gb|EKW60648.1| diaminopimelate epimerase [Escherichia coli 97.0003]
gi|427307781|gb|EKW70206.1| diaminopimelate epimerase [Escherichia coli 97.1742]
gi|427310772|gb|EKW73005.1| diaminopimelate epimerase [Escherichia coli 97.0007]
gi|427315484|gb|EKW77480.1| diaminopimelate epimerase [Escherichia coli 99.0672]
gi|427324974|gb|EKW86429.1| diaminopimelate epimerase [Escherichia coli 99.0678]
gi|427326386|gb|EKW87804.1| diaminopimelate epimerase [Escherichia coli 99.0713]
gi|429250710|gb|EKY35359.1| diaminopimelate epimerase [Escherichia coli 96.0109]
gi|429251236|gb|EKY35850.1| diaminopimelate epimerase [Escherichia coli 97.0010]
gi|429355551|gb|EKY92239.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-02030]
gi|429355741|gb|EKY92426.1| diaminopimelate epimerase [Escherichia coli O104:H4 str.
11-02033-1]
gi|429357121|gb|EKY93795.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-02092]
gi|429371185|gb|EKZ07744.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-02093]
gi|429371389|gb|EKZ07946.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-02281]
gi|429375419|gb|EKZ11954.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-02318]
gi|429387215|gb|EKZ23657.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-02913]
gi|429389777|gb|EKZ26196.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-03439]
gi|429390483|gb|EKZ26895.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-03943]
gi|429400917|gb|EKZ37228.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. 11-04080]
gi|429401884|gb|EKZ38178.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-9990]
gi|429404459|gb|EKZ40734.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-9450]
gi|429412690|gb|EKZ48881.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-4984]
gi|429415631|gb|EKZ51792.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-4986]
gi|429422950|gb|EKZ59059.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-4987]
gi|429427497|gb|EKZ63579.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-4988]
gi|429431802|gb|EKZ67845.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-5603]
gi|429439307|gb|EKZ75294.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-5604]
gi|429443674|gb|EKZ79624.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec12-0465]
gi|429448299|gb|EKZ84214.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-6006]
gi|429454063|gb|EKZ89928.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec12-0466]
gi|429458526|gb|EKZ94350.1| diaminopimelate epimerase [Escherichia coli O104:H4 str. Ec11-9941]
gi|430872057|gb|ELB95676.1| diaminopimelate epimerase [Escherichia coli KTE2]
gi|430873075|gb|ELB96654.1| diaminopimelate epimerase [Escherichia coli KTE4]
gi|430883021|gb|ELC06028.1| diaminopimelate epimerase [Escherichia coli KTE5]
gi|430890825|gb|ELC13385.1| diaminopimelate epimerase [Escherichia coli KTE10]
gi|430895554|gb|ELC17816.1| diaminopimelate epimerase [Escherichia coli KTE12]
gi|430913869|gb|ELC34988.1| diaminopimelate epimerase [Escherichia coli KTE21]
gi|430922529|gb|ELC43281.1| diaminopimelate epimerase [Escherichia coli KTE26]
gi|430935893|gb|ELC56188.1| diaminopimelate epimerase [Escherichia coli KTE44]
gi|430950302|gb|ELC69688.1| diaminopimelate epimerase [Escherichia coli KTE181]
gi|430962760|gb|ELC80612.1| diaminopimelate epimerase [Escherichia coli KTE189]
gi|430970868|gb|ELC87913.1| diaminopimelate epimerase [Escherichia coli KTE191]
gi|430977222|gb|ELC94073.1| diaminopimelate epimerase [Escherichia coli KTE193]
gi|430985127|gb|ELD01734.1| diaminopimelate epimerase [Escherichia coli KTE204]
gi|430995328|gb|ELD11625.1| diaminopimelate epimerase [Escherichia coli KTE206]
gi|431001681|gb|ELD17257.1| diaminopimelate epimerase [Escherichia coli KTE208]
gi|431003528|gb|ELD19011.1| diaminopimelate epimerase [Escherichia coli KTE210]
gi|431013398|gb|ELD27131.1| diaminopimelate epimerase [Escherichia coli KTE212]
gi|431017001|gb|ELD30518.1| diaminopimelate epimerase [Escherichia coli KTE213]
gi|431025688|gb|ELD38786.1| diaminopimelate epimerase [Escherichia coli KTE216]
gi|431047444|gb|ELD57444.1| diaminopimelate epimerase [Escherichia coli KTE228]
gi|431059782|gb|ELD69129.1| diaminopimelate epimerase [Escherichia coli KTE233]
gi|431066684|gb|ELD75308.1| diaminopimelate epimerase [Escherichia coli KTE235]
gi|431066923|gb|ELD75541.1| diaminopimelate epimerase [Escherichia coli KTE234]
gi|431080704|gb|ELD87498.1| diaminopimelate epimerase [Escherichia coli KTE47]
gi|431089449|gb|ELD95263.1| diaminopimelate epimerase [Escherichia coli KTE51]
gi|431104193|gb|ELE08796.1| diaminopimelate epimerase [Escherichia coli KTE55]
gi|431111502|gb|ELE15401.1| diaminopimelate epimerase [Escherichia coli KTE56]
gi|431117370|gb|ELE20609.1| diaminopimelate epimerase [Escherichia coli KTE58]
gi|431127293|gb|ELE29595.1| diaminopimelate epimerase [Escherichia coli KTE62]
gi|431150638|gb|ELE51688.1| diaminopimelate epimerase [Escherichia coli KTE75]
gi|431160122|gb|ELE60640.1| diaminopimelate epimerase [Escherichia coli KTE77]
gi|431166928|gb|ELE67231.1| diaminopimelate epimerase [Escherichia coli KTE80]
gi|431175855|gb|ELE75842.1| diaminopimelate epimerase [Escherichia coli KTE81]
gi|431176992|gb|ELE76932.1| diaminopimelate epimerase [Escherichia coli KTE83]
gi|431196498|gb|ELE95424.1| diaminopimelate epimerase [Escherichia coli KTE111]
gi|431197024|gb|ELE95891.1| diaminopimelate epimerase [Escherichia coli KTE116]
gi|431207192|gb|ELF05462.1| diaminopimelate epimerase [Escherichia coli KTE119]
gi|431209654|gb|ELF07725.1| diaminopimelate epimerase [Escherichia coli KTE142]
gi|431216865|gb|ELF14457.1| diaminopimelate epimerase [Escherichia coli KTE143]
gi|431218887|gb|ELF16312.1| diaminopimelate epimerase [Escherichia coli KTE156]
gi|431230674|gb|ELF26449.1| diaminopimelate epimerase [Escherichia coli KTE162]
gi|431234384|gb|ELF29785.1| diaminopimelate epimerase [Escherichia coli KTE161]
gi|431239864|gb|ELF34330.1| diaminopimelate epimerase [Escherichia coli KTE171]
gi|431251070|gb|ELF45088.1| diaminopimelate epimerase [Escherichia coli KTE8]
gi|431269847|gb|ELF61148.1| diaminopimelate epimerase [Escherichia coli KTE9]
gi|431270549|gb|ELF61712.1| diaminopimelate epimerase [Escherichia coli KTE45]
gi|431278980|gb|ELF69951.1| diaminopimelate epimerase [Escherichia coli KTE42]
gi|431293197|gb|ELF83577.1| diaminopimelate epimerase [Escherichia coli KTE29]
gi|431299654|gb|ELF89225.1| diaminopimelate epimerase [Escherichia coli KTE22]
gi|431305323|gb|ELF93652.1| diaminopimelate epimerase [Escherichia coli KTE46]
gi|431315292|gb|ELG03215.1| diaminopimelate epimerase [Escherichia coli KTE48]
gi|431321452|gb|ELG09053.1| diaminopimelate epimerase [Escherichia coli KTE50]
gi|431323237|gb|ELG10785.1| diaminopimelate epimerase [Escherichia coli KTE54]
gi|431323821|gb|ELG11287.1| diaminopimelate epimerase [Escherichia coli KTE59]
gi|431335004|gb|ELG22148.1| diaminopimelate epimerase [Escherichia coli KTE65]
gi|431335474|gb|ELG22612.1| diaminopimelate epimerase [Escherichia coli KTE78]
gi|431347749|gb|ELG34627.1| diaminopimelate epimerase [Escherichia coli KTE79]
gi|431352537|gb|ELG39306.1| diaminopimelate epimerase [Escherichia coli KTE91]
gi|431359632|gb|ELG46265.1| diaminopimelate epimerase [Escherichia coli KTE101]
gi|431373420|gb|ELG59026.1| diaminopimelate epimerase [Escherichia coli KTE118]
gi|431377673|gb|ELG62799.1| diaminopimelate epimerase [Escherichia coli KTE123]
gi|431381165|gb|ELG65797.1| diaminopimelate epimerase [Escherichia coli KTE136]
gi|431382057|gb|ELG66402.1| diaminopimelate epimerase [Escherichia coli KTE135]
gi|431384942|gb|ELG68932.1| diaminopimelate epimerase [Escherichia coli KTE140]
gi|431400810|gb|ELG84174.1| diaminopimelate epimerase [Escherichia coli KTE146]
gi|431413201|gb|ELG95995.1| diaminopimelate epimerase [Escherichia coli KTE158]
gi|431417415|gb|ELG99878.1| diaminopimelate epimerase [Escherichia coli KTE154]
gi|431434492|gb|ELH16141.1| diaminopimelate epimerase [Escherichia coli KTE173]
gi|431435080|gb|ELH16693.1| diaminopimelate epimerase [Escherichia coli KTE190]
gi|431439916|gb|ELH21247.1| diaminopimelate epimerase [Escherichia coli KTE175]
gi|431459344|gb|ELH39657.1| diaminopimelate epimerase [Escherichia coli KTE184]
gi|431466721|gb|ELH46738.1| diaminopimelate epimerase [Escherichia coli KTE196]
gi|431467336|gb|ELH47346.1| diaminopimelate epimerase [Escherichia coli KTE202]
gi|431476149|gb|ELH55943.1| diaminopimelate epimerase [Escherichia coli KTE203]
gi|431477534|gb|ELH57302.1| diaminopimelate epimerase [Escherichia coli KTE197]
gi|431487966|gb|ELH67607.1| diaminopimelate epimerase [Escherichia coli KTE211]
gi|431520854|gb|ELH98173.1| diaminopimelate epimerase [Escherichia coli KTE229]
gi|431521752|gb|ELH98991.1| diaminopimelate epimerase [Escherichia coli KTE227]
gi|431526213|gb|ELI02972.1| diaminopimelate epimerase [Escherichia coli KTE104]
gi|431526398|gb|ELI03152.1| diaminopimelate epimerase [Escherichia coli KTE105]
gi|431530154|gb|ELI06839.1| diaminopimelate epimerase [Escherichia coli KTE106]
gi|431545839|gb|ELI20484.1| diaminopimelate epimerase [Escherichia coli KTE112]
gi|431551976|gb|ELI25939.1| diaminopimelate epimerase [Escherichia coli KTE117]
gi|431561787|gb|ELI35149.1| diaminopimelate epimerase [Escherichia coli KTE120]
gi|431565180|gb|ELI38318.1| diaminopimelate epimerase [Escherichia coli KTE122]
gi|431577585|gb|ELI50216.1| diaminopimelate epimerase [Escherichia coli KTE125]
gi|431578282|gb|ELI50890.1| diaminopimelate epimerase [Escherichia coli KTE128]
gi|431592986|gb|ELI63551.1| diaminopimelate epimerase [Escherichia coli KTE131]
gi|431606680|gb|ELI76054.1| diaminopimelate epimerase [Escherichia coli KTE138]
gi|431611954|gb|ELI81213.1| diaminopimelate epimerase [Escherichia coli KTE139]
gi|431623490|gb|ELI92159.1| diaminopimelate epimerase [Escherichia coli KTE148]
gi|431642015|gb|ELJ09741.1| diaminopimelate epimerase [Escherichia coli KTE163]
gi|431652995|gb|ELJ20112.1| diaminopimelate epimerase [Escherichia coli KTE166]
gi|431669731|gb|ELJ36100.1| diaminopimelate epimerase [Escherichia coli KTE176]
gi|431673064|gb|ELJ39295.1| diaminopimelate epimerase [Escherichia coli KTE177]
gi|431683109|gb|ELJ48748.1| diaminopimelate epimerase [Escherichia coli KTE179]
gi|431683722|gb|ELJ49350.1| diaminopimelate epimerase [Escherichia coli KTE180]
gi|431687655|gb|ELJ53199.1| diaminopimelate epimerase [Escherichia coli KTE232]
gi|431697550|gb|ELJ62656.1| diaminopimelate epimerase [Escherichia coli KTE82]
gi|431712908|gb|ELJ77175.1| diaminopimelate epimerase [Escherichia coli KTE90]
gi|431715527|gb|ELJ79675.1| diaminopimelate epimerase [Escherichia coli KTE95]
gi|431716619|gb|ELJ80726.1| diaminopimelate epimerase [Escherichia coli KTE94]
gi|432344553|gb|ELL39143.1| diaminopimelate epimerase [Escherichia coli J96]
gi|432346343|gb|ELL40827.1| diaminopimelate epimerase [Escherichia coli J96]
gi|441608574|emb|CCP95658.1| Diaminopimelate epimerase [Escherichia coli O10:K5(L):H4 str. ATCC
23506]
gi|441654649|emb|CCQ00615.1| Diaminopimelate epimerase [Escherichia coli O5:K4(L):H4 str. ATCC
23502]
gi|443424389|gb|AGC89293.1| diaminopimelate epimerase [Escherichia coli APEC O78]
gi|444534977|gb|ELV15142.1| diaminopimelate epimerase [Escherichia coli 99.0814]
gi|444536475|gb|ELV16492.1| diaminopimelate epimerase [Escherichia coli 09BKT078844]
gi|444545285|gb|ELV24212.1| diaminopimelate epimerase [Escherichia coli 99.0815]
gi|444554425|gb|ELV31989.1| diaminopimelate epimerase [Escherichia coli 99.0816]
gi|444554589|gb|ELV32146.1| diaminopimelate epimerase [Escherichia coli 99.0839]
gi|444559312|gb|ELV36546.1| diaminopimelate epimerase [Escherichia coli 99.0848]
gi|444568970|gb|ELV45613.1| diaminopimelate epimerase [Escherichia coli 99.1753]
gi|444572333|gb|ELV48772.1| diaminopimelate epimerase [Escherichia coli 99.1775]
gi|444575830|gb|ELV52055.1| diaminopimelate epimerase [Escherichia coli 99.1793]
gi|444587970|gb|ELV63368.1| diaminopimelate epimerase [Escherichia coli 99.1805]
gi|444589270|gb|ELV64612.1| diaminopimelate epimerase [Escherichia coli ATCC 700728]
gi|444589448|gb|ELV64783.1| diaminopimelate epimerase [Escherichia coli PA11]
gi|444603175|gb|ELV77886.1| diaminopimelate epimerase [Escherichia coli PA19]
gi|444603260|gb|ELV77970.1| diaminopimelate epimerase [Escherichia coli PA13]
gi|444612449|gb|ELV86742.1| diaminopimelate epimerase [Escherichia coli PA2]
gi|444619025|gb|ELV93086.1| diaminopimelate epimerase [Escherichia coli PA47]
gi|444620242|gb|ELV94251.1| diaminopimelate epimerase [Escherichia coli PA48]
gi|444626750|gb|ELW00540.1| diaminopimelate epimerase [Escherichia coli PA8]
gi|444635241|gb|ELW08673.1| diaminopimelate epimerase [Escherichia coli 7.1982]
gi|444637089|gb|ELW10465.1| diaminopimelate epimerase [Escherichia coli 99.1781]
gi|444642167|gb|ELW15371.1| diaminopimelate epimerase [Escherichia coli 99.1762]
gi|444651718|gb|ELW24514.1| diaminopimelate epimerase [Escherichia coli PA35]
gi|444656996|gb|ELW29498.1| diaminopimelate epimerase [Escherichia coli 3.4880]
gi|444659833|gb|ELW32227.1| diaminopimelate epimerase [Escherichia coli 95.0083]
gi|444666672|gb|ELW38732.1| diaminopimelate epimerase [Escherichia coli 99.0670]
gi|449313560|gb|EMD03765.1| diaminopimelate epimerase [Escherichia coli O08]
gi|449314189|gb|EMD04363.1| diaminopimelate epimerase [Escherichia coli S17]
gi|449316181|gb|EMD06302.1| diaminopimelate epimerase [Escherichia coli SEPT362]
Length = 274
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|148208|gb|AAA67605.1| diaminopimelate epimerase [Escherichia coli str. K-12 substr.
MG1655]
Length = 275
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 162/289 (56%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MMQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+
Sbjct: 60 HYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVXTANGRMVLTVTDDDLVRVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 MGEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVD 166
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 DVDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAV 226
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 AVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275
>gi|297537396|ref|YP_003673165.1| diaminopimelate epimerase [Methylotenera versatilis 301]
gi|297256743|gb|ADI28588.1| diaminopimelate epimerase [Methylotenera versatilis 301]
Length = 276
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 164/287 (57%), Gaps = 21/287 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
LHF K G GNDFI+++ + +P ++T EQ L R FGIG D ++ D+
Sbjct: 5 LHFTKMQGAGNDFIVINGID--QPFQLTAEQIQTLAHRQFGIGFDQLLLVETS-KVADFK 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCF RF+ + + L+ K +V T +G+I P+++++G V V+M
Sbjct: 62 YRIFNADGSEVAQCGNGARCFVRFVVD-QKLSNKHEISVETASGIITPKLENNGLVTVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L S+VP A + V L+V + ++ VSMGNPH V VD
Sbjct: 121 GAPRLSPSEVPFIADAAANSYV----LEVADQQITISAVSMGNPHAVQI---------VD 167
Query: 258 KLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ +A +G + E H FP R N F++II +K+RV+ERG+G TLACGTGACA V
Sbjct: 168 DVEIAPVVALGSQIEVHPRFPERVNAGFMQIIDEHHIKLRVFERGSGETLACGTGACAAV 227
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA + G + V GG L I W+ ++ V MTGPA VF G++
Sbjct: 228 VAGIQLGRLQSPVKVSARGGELHIAWQGGNSPVMMTGPAVAVFTGNI 274
>gi|159795186|pdb|2Q9J|A Chain A, Crystal Structure Of The C217s Mutant Of Diaminopimelate
Epimerase
Length = 274
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 166/288 (57%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
+ F K HGLGNDF++VD + TPE +L +R+ GIG D + I P D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE GNG RCFARF+ L+ L K+ +V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQXGNGARCFARFVT-LKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ N+ ++GP E H FP R N F++II+ +K+RV+ERGAG T A G+GACA V
Sbjct: 167 IQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQASGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+++G VDLPGG L IEW + +YMTG A ++ G + L
Sbjct: 227 VGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274
>gi|261823391|ref|YP_003261497.1| diaminopimelate epimerase [Pectobacterium wasabiae WPP163]
gi|261607404|gb|ACX89890.1| diaminopimelate epimerase [Pectobacterium wasabiae WPP163]
gi|385873859|gb|AFI92379.1| Diaminopimelate epimerase [Pectobacterium sp. SCC3193]
Length = 274
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 165/291 (56%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFAKMHGLGNDFMVVDAV-TQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + VP + +++++ + V C VSMGNPHCV ++
Sbjct: 119 GEPNFEPQQVPFRAVKAEKTYIMRAD------EHTVLCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A++ GP E H FP R N F++I+ +++RV+ERGAG T ACG+GACA
Sbjct: 164 VDDVETAKVETLGPLLESHERFPERANIGFMQIVDSQTVRLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V +L+G + V LPGG LDI+W + ++MTGPA V+ G + L
Sbjct: 224 AVAVGILQGSLSAKVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDGFIHL 274
>gi|417228443|ref|ZP_12030201.1| diaminopimelate epimerase [Escherichia coli 5.0959]
gi|386207778|gb|EII12283.1| diaminopimelate epimerase [Escherichia coli 5.0959]
Length = 274
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLTEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|422019074|ref|ZP_16365624.1| diaminopimelate epimerase [Providencia alcalifaciens Dmel2]
gi|414103616|gb|EKT65190.1| diaminopimelate epimerase [Providencia alcalifaciens Dmel2]
Length = 274
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 162/290 (55%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P D+
Sbjct: 1 MQFSKMHGLGNDFMVVDGV-TQNVYFSPELICRLADRHTGVGFDQLLLVEAPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L KQ V T +G + I ++ V V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKQKIKVSTQSGRMTLTINENDDVCVNM 118
Query: 198 GEPILKASDVP-TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
GEP + +VP ++ A K + E V VSMGNPHCV ++V
Sbjct: 119 GEPDFEPQNVPFRAVKAEKTYIIRAQERTV-----FAGVVSMGNPHCV---------VQV 164
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + AE+ GP E H FP R N F+E++S +++RV+ERGAG T ACG+GACA
Sbjct: 165 DNVQTAEVEVLGPALESHERFPERANIGFMEVVSADYIRLRVYERGAGETQACGSGACAA 224
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V V +G R VDLPGG LDI W + +YMTGPA V+ G + +
Sbjct: 225 VAVGVGQGLLANRVRVDLPGGSLDISWDGPGSPLYMTGPATHVYDGVIQI 274
>gi|289578518|ref|YP_003477145.1| diaminopimelate epimerase [Thermoanaerobacter italicus Ab9]
gi|289528231|gb|ADD02583.1| diaminopimelate epimerase [Thermoanaerobacter italicus Ab9]
Length = 274
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 121/290 (41%), Positives = 169/290 (58%), Gaps = 21/290 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYT 137
+ F K HGLGNDFI+++ + + E A KLCDR+FGIGADG++ P G+ D
Sbjct: 1 MKFTKMHGLGNDFIVIEALENVD---YSELAVKLCDRHFGIGADGLLVVEPSGI--ADIR 55
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-QDDGKV--- 193
MRIFN+DGSE EMCGNG RCFA+++ E + K+ TV T AG+I+PE+ +GKV
Sbjct: 56 MRIFNADGSEAEMCGNGSRCFAKYVYE-RGIVKKEKMTVETLAGVIMPEVFVKNGKVESV 114
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
KV MG PI + S +P Q + + +DG + +T + +G PH + F +N
Sbjct: 115 KVYMGNPIFETSKIPIKTDK---QKFINEPVKIDGKVYKLTSIRVGVPHTIVFVESLDEN 171
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ + E+G K E S+F TN +FV++ + +R WERG G TLACG+GACA
Sbjct: 172 M------IKELGSKIEKSSLFSQGTNVDFVKVEDKENIFVRTWERGVGLTLACGSGACAS 225
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA+ + G ER V G L +EW EDN +Y++G E VF G + L
Sbjct: 226 AVASAVLGKTERNVNVHFKAGKLFVEWL-EDNSIYLSGKVEEVFRGEIEL 274
>gi|167770781|ref|ZP_02442834.1| hypothetical protein ANACOL_02128 [Anaerotruncus colihominis DSM
17241]
gi|167667376|gb|EDS11506.1| diaminopimelate epimerase [Anaerotruncus colihominis DSM 17241]
Length = 276
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 124/288 (43%), Positives = 167/288 (57%), Gaps = 22/288 (7%)
Query: 85 HGLGNDFILVDNRNSTEPRITPEQAAKLC-DRNFGIGADGVIFAMPGVNGTDYTMRIFNS 143
HGLGND++ ++ N PE+ A++ DR+FGIG+DG+I P + D+ MR+FN+
Sbjct: 2 HGLGNDYVYINCLNQKLKH--PEEIARIVSDRHFGIGSDGLILICPS-DRADFQMRMFNA 58
Query: 144 DGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL--IVPEIQDDG---KVKVDMG 198
DGSE MCGNG+RC +++ + + L + S + T +G+ + + DG V+VDMG
Sbjct: 59 DGSEGNMCGNGIRCVGKYVYD-QGLTERTSIQIETKSGVRSLDLTLGPDGTVSSVRVDMG 117
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
+ LKA D+P + + + V G + VTCVSMGNPH V F VD
Sbjct: 118 KASLKAKDIPVETDYD---DFISQPMLVRGEVYLVTCVSMGNPHAVVFCDD------VDN 168
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
L LAEIGP FE H FP NTEF+++I LKMRVWERG+G T ACGTGACA V AA+
Sbjct: 169 LPLAEIGPLFERHEKFPEGVNTEFIQLIDHKTLKMRVWERGSGETFACGTGACASVAAAI 228
Query: 319 LEGHA--ERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
+ + + TV L GG L I D V M GPA VF G + L+
Sbjct: 229 VNENCDFDEEVTVRLLGGDLKITV-HSDYTVLMDGPAVHVFDGDIELD 275
>gi|422296261|ref|ZP_16383934.1| diaminopimelate epimerase [Pseudomonas avellanae BPIC 631]
gi|407992622|gb|EKG34211.1| diaminopimelate epimerase [Pseudomonas avellanae BPIC 631]
Length = 276
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 131/290 (45%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I +I+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKGGIIELDIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L ++P +A + +S LDVDG + VSMGNPH V L+V
Sbjct: 120 MGPPRLVPEEIPFQ-AAEQAKSY---SLDVDGQTVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A + GPK EHH FPAR N F+ ++ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINNAPVHTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276
>gi|295083886|emb|CBK65409.1| diaminopimelate epimerase [Bacteroides xylanisolvens XB1A]
Length = 271
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 125/292 (42%), Positives = 168/292 (57%), Gaps = 38/292 (13%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAA-KLCDRNFGIGADGVIFAMPGV-NGTDY 136
+ F K HG GND+I VD + P PE+ A + + GIG+DG+I + GV + D+
Sbjct: 5 IKFTKMHGTGNDYIYVDT--TRYPIADPEKKAIEWSKFHTGIGSDGLI--LIGVSDKADF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
+MRIFN+DGSE MCGNG RC +++ E L K T+ T +G+ + ++Q +GK
Sbjct: 61 SMRIFNADGSEAMMCGNGSRCVGKYVYEY-GLTDKTEITLDTLSGIKILKLQVEGKTVST 119
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKW--NVTCVSMGNPHCVTFGTKE 250
V VDMG P Q E+D G K+ T VSMGNPH VTF
Sbjct: 120 VTVDMGSP----------------QET--GEIDW-GKKYPFQSTKVSMGNPHLVTFIDD- 159
Query: 251 GQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
+ ++NL EIGP+ E+H +FP RTN EF +I+ ++MRVWERG+G T ACGTGA
Sbjct: 160 -----ITRINLPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGA 214
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
CA VAA + G A R+ V + GG + IEW E H+ MTGPA VF G ++
Sbjct: 215 CATAVAAFINGLAGRKSDVIMDGGTVTIEWDETSGHILMTGPATKVFDGEIV 266
>gi|422620375|ref|ZP_16689055.1| diaminopimelate epimerase [Pseudomonas syringae pv. japonica str.
M301072]
gi|330900735|gb|EGH32154.1| diaminopimelate epimerase [Pseudomonas syringae pv. japonica str.
M301072]
Length = 276
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 128/290 (44%), Positives = 168/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKSGIIELDIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P VP + + + +DVDG + VSMGNPH V L+V
Sbjct: 120 MGPPRF----VPDEIPFEAAEQAISYTVDVDGQNIEMAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A ++GPK EHH FPAR N F+ ++ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINNAPVHQLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276
>gi|161486052|ref|NP_756589.2| diaminopimelate epimerase [Escherichia coli CFT073]
gi|386641443|ref|YP_006108241.1| diaminopimelate epimerase [Escherichia coli ABU 83972]
gi|432414073|ref|ZP_19656725.1| diaminopimelate epimerase [Escherichia coli KTE39]
gi|432438766|ref|ZP_19681142.1| diaminopimelate epimerase [Escherichia coli KTE188]
gi|432458951|ref|ZP_19701124.1| diaminopimelate epimerase [Escherichia coli KTE201]
gi|432493061|ref|ZP_19734889.1| diaminopimelate epimerase [Escherichia coli KTE214]
gi|432506701|ref|ZP_19748418.1| diaminopimelate epimerase [Escherichia coli KTE220]
gi|432526282|ref|ZP_19763393.1| diaminopimelate epimerase [Escherichia coli KTE230]
gi|432571083|ref|ZP_19807587.1| diaminopimelate epimerase [Escherichia coli KTE53]
gi|432595022|ref|ZP_19831332.1| diaminopimelate epimerase [Escherichia coli KTE60]
gi|432605246|ref|ZP_19841455.1| diaminopimelate epimerase [Escherichia coli KTE67]
gi|432653463|ref|ZP_19889199.1| diaminopimelate epimerase [Escherichia coli KTE87]
gi|432785795|ref|ZP_20019970.1| diaminopimelate epimerase [Escherichia coli KTE63]
gi|432976033|ref|ZP_20164864.1| diaminopimelate epimerase [Escherichia coli KTE209]
gi|432997592|ref|ZP_20186171.1| diaminopimelate epimerase [Escherichia coli KTE218]
gi|433002187|ref|ZP_20190704.1| diaminopimelate epimerase [Escherichia coli KTE223]
gi|433060333|ref|ZP_20247363.1| diaminopimelate epimerase [Escherichia coli KTE124]
gi|433089536|ref|ZP_20275893.1| diaminopimelate epimerase [Escherichia coli KTE137]
gi|433117740|ref|ZP_20303518.1| diaminopimelate epimerase [Escherichia coli KTE153]
gi|433127443|ref|ZP_20312982.1| diaminopimelate epimerase [Escherichia coli KTE160]
gi|433141516|ref|ZP_20326752.1| diaminopimelate epimerase [Escherichia coli KTE167]
gi|433151469|ref|ZP_20336463.1| diaminopimelate epimerase [Escherichia coli KTE174]
gi|433214839|ref|ZP_20398411.1| diaminopimelate epimerase [Escherichia coli KTE99]
gi|442603434|ref|ZP_21018324.1| Diaminopimelate epimerase [Escherichia coli Nissle 1917]
gi|29839329|sp|Q8FBN6.2|DAPF_ECOL6 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|307555935|gb|ADN48710.1| diaminopimelate epimerase [Escherichia coli ABU 83972]
gi|430932523|gb|ELC52944.1| diaminopimelate epimerase [Escherichia coli KTE39]
gi|430959645|gb|ELC77956.1| diaminopimelate epimerase [Escherichia coli KTE188]
gi|430978971|gb|ELC95760.1| diaminopimelate epimerase [Escherichia coli KTE201]
gi|431030685|gb|ELD43691.1| diaminopimelate epimerase [Escherichia coli KTE214]
gi|431034596|gb|ELD46522.1| diaminopimelate epimerase [Escherichia coli KTE220]
gi|431047342|gb|ELD57343.1| diaminopimelate epimerase [Escherichia coli KTE230]
gi|431096863|gb|ELE02318.1| diaminopimelate epimerase [Escherichia coli KTE53]
gi|431125522|gb|ELE27924.1| diaminopimelate epimerase [Escherichia coli KTE60]
gi|431144268|gb|ELE45975.1| diaminopimelate epimerase [Escherichia coli KTE67]
gi|431186580|gb|ELE86120.1| diaminopimelate epimerase [Escherichia coli KTE87]
gi|431325701|gb|ELG13082.1| diaminopimelate epimerase [Escherichia coli KTE63]
gi|431485167|gb|ELH64831.1| diaminopimelate epimerase [Escherichia coli KTE209]
gi|431501783|gb|ELH80759.1| diaminopimelate epimerase [Escherichia coli KTE218]
gi|431504459|gb|ELH83085.1| diaminopimelate epimerase [Escherichia coli KTE223]
gi|431565580|gb|ELI38659.1| diaminopimelate epimerase [Escherichia coli KTE124]
gi|431600482|gb|ELI70152.1| diaminopimelate epimerase [Escherichia coli KTE137]
gi|431630339|gb|ELI98676.1| diaminopimelate epimerase [Escherichia coli KTE153]
gi|431639678|gb|ELJ07528.1| diaminopimelate epimerase [Escherichia coli KTE160]
gi|431655369|gb|ELJ22402.1| diaminopimelate epimerase [Escherichia coli KTE167]
gi|431666783|gb|ELJ33408.1| diaminopimelate epimerase [Escherichia coli KTE174]
gi|431731282|gb|ELJ94788.1| diaminopimelate epimerase [Escherichia coli KTE99]
gi|441715858|emb|CCQ04301.1| Diaminopimelate epimerase [Escherichia coli Nissle 1917]
Length = 274
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +P+ +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP ANK V+ + + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVP--FRANK----VEKTYIMRAAEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|410093899|ref|ZP_11290363.1| diaminopimelate epimerase [Pseudomonas viridiflava UASWS0038]
gi|409758682|gb|EKN43957.1| diaminopimelate epimerase [Pseudomonas viridiflava UASWS0038]
Length = 276
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 167/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ G+G D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGVGFDQLLLVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKSGIIELDIRSDGQISVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L ++P A LDVDG + VSMGNPH V L+V
Sbjct: 120 MGPPRLIPDEIPFQAPAQ----ATSYTLDVDGQSVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A E+GPK EHH FPAR N F+ I+ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINNAPVHELGPKIEHHPRFPARVNVGFLHIVDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAITQGWMMSPLLIDLPGGRLSIEWAGPGHPVMMTGPAVRVYEGQVRL 276
>gi|259906884|ref|YP_002647240.1| diaminopimelate epimerase [Erwinia pyrifoliae Ep1/96]
gi|387869594|ref|YP_005800964.1| protein dapF [Erwinia pyrifoliae DSM 12163]
gi|224962506|emb|CAX53961.1| Diaminopimelate epimerase [Erwinia pyrifoliae Ep1/96]
gi|283476677|emb|CAY72506.1| dapF [Erwinia pyrifoliae DSM 12163]
Length = 274
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 164/291 (56%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K V T +G ++ + D +V V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKSEIRVSTQSGRMILSVTQDERVCVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + +P ANK +++ + V+ V C VSMGNPHCV L+
Sbjct: 119 GEPNFEPQQIP--FRANKAENIYL----MRAVEQTVMCGVVSMGNPHCV---------LQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A + GP E H FP R N F+E++ +++RV+ERGAG T ACG+GACA
Sbjct: 164 VDNVKTAAVETLGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + + + VDLPGG L+I WK + ++MTGPA V+ G + L
Sbjct: 224 AVAVGIQQALLAEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDGFIHL 274
>gi|307728184|ref|YP_003905408.1| diaminopimelate epimerase [Burkholderia sp. CCGE1003]
gi|307582719|gb|ADN56117.1| diaminopimelate epimerase [Burkholderia sp. CCGE1003]
Length = 287
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 161/292 (55%), Gaps = 16/292 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HG GNDF+++D T+P ++P Q L DR+FG+GAD ++ P V G D+
Sbjct: 3 LKFTKMHGAGNDFVVLDG--YTQPVNLSPAQVRALADRHFGVGADQLLLVEKPTVEGVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN DG E E CGNG RCF +F+ + L ++S V G I +Q++G+V VD
Sbjct: 61 RYRIFNCDGGEVEHCGNGARCFVKFVRD-SGLTDQRSVRVQVQKGTITLTMQENGEVLVD 119
Query: 197 MGEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
MG P+ + VP + ++ + LDV+G ++ VSMGNPH V
Sbjct: 120 MGAPVFEPERVPFATKGIQGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVVDD---- 175
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V+ + GP E H+ FP R N F++I+ S++K+RV+ERGAG TLACGTGACA
Sbjct: 176 --VEAFPVLVEGPVIERHARFPQRVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAA 233
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEW--KEEDNHVYMTGPAEVVFYGSVLL 363
V A + G + V GG L I W +E + M GPA VF G + L
Sbjct: 234 VAAGIRRGLLDSPVLVHTHGGKLTISWDSSQESEPLLMAGPATTVFQGEIEL 285
>gi|152977227|ref|YP_001376744.1| diaminopimelate epimerase [Bacillus cytotoxicus NVH 391-98]
gi|189082825|sp|A7GUE1.1|DAPF_BACCN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|152025979|gb|ABS23749.1| Diaminopimelate epimerase [Bacillus cytotoxicus NVH 391-98]
Length = 288
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 165/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E I E+ A K+ +RN GIGADG+I P
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEHIPEEELALVAEKVSNRNTGIGADGMILICPS-EVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
MR+FN+DGSE + CGNG+RC A++ E L + FT+ T AG++ E+ +
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETIFTIETLAGIVTAEVTVENDIVTL 120
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
VK+DMG P L +++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 VKIDMGAPRLTRAELP--MLGEGETPFIREDFLFHNQRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E+H +FP R N EF+EI++ +++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLENHEMFPERVNVEFIEILNETEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE V M GPAEV+ +G
Sbjct: 233 SVVAAILNGKMERGKEITVHLAGGDLMITWTEEGT-VMMKGPAEVICHG 280
>gi|227888606|ref|ZP_04006411.1| diaminopimelate epimerase [Escherichia coli 83972]
gi|300985707|ref|ZP_07177562.1| diaminopimelate epimerase [Escherichia coli MS 45-1]
gi|301047309|ref|ZP_07194395.1| diaminopimelate epimerase [Escherichia coli MS 185-1]
gi|386631748|ref|YP_006151468.1| diaminopimelate epimerase [Escherichia coli str. 'clone D i2']
gi|386636668|ref|YP_006156387.1| diaminopimelate epimerase [Escherichia coli str. 'clone D i14']
gi|422364117|ref|ZP_16444645.1| diaminopimelate epimerase [Escherichia coli MS 153-1]
gi|26110979|gb|AAN83163.1|AE016769_278 Diaminopimelate epimerase [Escherichia coli CFT073]
gi|227834445|gb|EEJ44911.1| diaminopimelate epimerase [Escherichia coli 83972]
gi|300300828|gb|EFJ57213.1| diaminopimelate epimerase [Escherichia coli MS 185-1]
gi|300407981|gb|EFJ91519.1| diaminopimelate epimerase [Escherichia coli MS 45-1]
gi|315293148|gb|EFU52500.1| diaminopimelate epimerase [Escherichia coli MS 153-1]
gi|355422647|gb|AER86844.1| diaminopimelate epimerase [Escherichia coli str. 'clone D i2']
gi|355427567|gb|AER91763.1| diaminopimelate epimerase [Escherichia coli str. 'clone D i14']
Length = 275
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 162/289 (56%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +P+ +L DR+ G+G D ++ P + D+
Sbjct: 1 MMQFSKMHGLGNDFMVVDA-VTQNVFFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+
Sbjct: 60 HYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP + S VP ANK V+ + + + C VSMGNPHCV Q
Sbjct: 119 MGEPNFEPSAVP--FRANK----VEKTYIMRAAEQTILCGVVSMGNPHCVI------QVD 166
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 DVDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAV 226
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 AVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275
>gi|423213942|ref|ZP_17200471.1| diaminopimelate epimerase [Bacteroides xylanisolvens CL03T12C04]
gi|392693285|gb|EIY86519.1| diaminopimelate epimerase [Bacteroides xylanisolvens CL03T12C04]
Length = 271
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 125/292 (42%), Positives = 168/292 (57%), Gaps = 38/292 (13%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAA-KLCDRNFGIGADGVIFAMPGV-NGTDY 136
+ F K HG GND+I VD + P PE+ A + + GIG+DG+I + GV + D+
Sbjct: 5 IKFTKMHGAGNDYIYVDT--TRYPIADPEKKAIEWSKFHTGIGSDGLI--LIGVSDKADF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
+MRIFN+DGSE MCGNG RC +++ E L K T+ T +G+ + ++Q +GK
Sbjct: 61 SMRIFNADGSEAMMCGNGSRCVGKYVYEY-GLTDKTEITLDTLSGIKILKLQVEGKTVST 119
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKW--NVTCVSMGNPHCVTFGTKE 250
V VDMG P Q E+D G K+ T VSMGNPH VTF
Sbjct: 120 VTVDMGSP----------------QET--GEIDW-GKKYPFQSTKVSMGNPHLVTFIDD- 159
Query: 251 GQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
+ ++NL EIGP+ E+H +FP RTN EF +I+ ++MRVWERG+G T ACGTGA
Sbjct: 160 -----ITRINLPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGA 214
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
CA VAA + G A R+ V + GG + IEW E H+ MTGPA VF G ++
Sbjct: 215 CATAVAAFINGLAGRKSDVIMDGGTVTIEWDETSGHILMTGPATKVFDGEIV 266
>gi|397685610|ref|YP_006522929.1| diaminopimelate epimerase [Pseudomonas stutzeri DSM 10701]
gi|395807166|gb|AFN76571.1| diaminopimelate epimerase [Pseudomonas stutzeri DSM 10701]
Length = 276
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 127/290 (43%), Positives = 167/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ G+G D ++ P + D+
Sbjct: 2 LLRFTKMHGLGNDFMVID-LISQHAHIQPKHARQWGDRHTGVGFDQLLLVEPPHDPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I I+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTTKRRIRVETKGGVIELNIRADGQIGVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L VP+ + D + L VDG + + +SMGNPH V L+V
Sbjct: 120 MGPPRL----VPSEIPFQADAEALSYPLKVDGQQLEIAAISMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D L+ A E+GP+ EHH FP R N F++++ ++RVWERGAG T ACGTGACA
Sbjct: 167 DDLDKAPVHELGPRIEHHPRFPQRVNAGFLQVVDRQHARLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAIRQGWMDSPVQIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276
>gi|333916672|ref|YP_004490404.1| diaminopimelate epimerase [Delftia sp. Cs1-4]
gi|333746872|gb|AEF92049.1| Diaminopimelate epimerase [Delftia sp. Cs1-4]
Length = 286
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 122/292 (41%), Positives = 161/292 (55%), Gaps = 23/292 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPG-VNGTDYT 137
+ F K G GNDF+++D + ++ Q L R FG+GAD ++ P G D+
Sbjct: 3 IRFTKMQGAGNDFVVLDE-TAGPLGLSAAQYRFLAHRQFGVGADQILTVRPSPAEGIDFE 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
I N+DG E E CGNG RCFAR++ + + L GK V T AGLI PE+ DG+V VDM
Sbjct: 62 YVIHNADGGEVEQCGNGARCFARYVHD-KGLTGKSVIRVQTLAGLIAPELHADGRVTVDM 120
Query: 198 GEPILK--------ASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTK 249
G+P+L+ A VP L A + + +L + W + VSMGNPH V
Sbjct: 121 GQPVLEPSLVPFNSADLVPRPLGAAQQWPL---QLGDEATVW-IAPVSMGNPHAVQLVDD 176
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
VD +A GP E H+ FP R N F++I+ Q+++RV+ERGAG TLACGTG
Sbjct: 177 ------VDHAPVATWGPLIERHARFPQRVNAGFMQIVDRGQIRLRVYERGAGETLACGTG 230
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
ACA VVA + G + R V GG L IEW + V MTGPAE VF G +
Sbjct: 231 ACAAVVAGIRWGLLDARVDVHTRGGRLTIEW--DGGAVRMTGPAEFVFEGQI 280
>gi|334126146|ref|ZP_08500125.1| diaminopimelate epimerase [Enterobacter hormaechei ATCC 49162]
gi|333385806|gb|EGK57032.1| diaminopimelate epimerase [Enterobacter hormaechei ATCC 49162]
Length = 278
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 164/292 (56%), Gaps = 23/292 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 4 MMQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHVGVGFDQLLVVEPPYDPDLDF 62
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+
Sbjct: 63 HYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTDDELVRVN 121
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP + S VP + + ++++ + V C VSMGNPHCV +
Sbjct: 122 MGEPNFEPSAVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCV---------I 166
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+VD + A + GP E H FP R N F++++ +++RV+ERGAG T ACG+GAC
Sbjct: 167 QVDDVQTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGAC 226
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A V + +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 AAVAVGISQGLLAEEVRVELPGGRLDIAWKGAGHPLYMTGPATHVYDGFIHL 278
>gi|288937768|ref|YP_003441827.1| diaminopimelate epimerase [Klebsiella variicola At-22]
gi|365144568|ref|ZP_09348784.1| diaminopimelate epimerase [Klebsiella sp. 4_1_44FAA]
gi|378976312|ref|YP_005224453.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|402783075|ref|YP_006638621.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
1084]
gi|419976101|ref|ZP_14491503.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|419981878|ref|ZP_14497148.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|419987408|ref|ZP_14502528.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|419992978|ref|ZP_14507927.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|419999214|ref|ZP_14513992.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|420004983|ref|ZP_14519613.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|420010576|ref|ZP_14525047.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|420016816|ref|ZP_14531103.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|420027879|ref|ZP_14541866.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|420039311|ref|ZP_14552947.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|420045186|ref|ZP_14558657.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|420051116|ref|ZP_14564407.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|420061811|ref|ZP_14574794.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|420068088|ref|ZP_14580873.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|420073513|ref|ZP_14586138.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|420079318|ref|ZP_14591765.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|420085315|ref|ZP_14597545.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|421908863|ref|ZP_16338695.1| Diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|421917220|ref|ZP_16346782.1| Diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|425078990|ref|ZP_18482092.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
WGLW1]
gi|425084053|ref|ZP_18487150.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
WGLW2]
gi|425084637|ref|ZP_18487730.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
WGLW3]
gi|425094082|ref|ZP_18497165.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
WGLW5]
gi|428151178|ref|ZP_18998921.1| Diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|428934210|ref|ZP_19007738.1| diaminopimelate epimerase [Klebsiella pneumoniae JHCK1]
gi|428939144|ref|ZP_19012259.1| diaminopimelate epimerase [Klebsiella pneumoniae VA360]
gi|449058283|ref|ZP_21736573.1| diaminopimelate epimerase [Klebsiella pneumoniae hvKP1]
gi|288892477|gb|ADC60795.1| diaminopimelate epimerase [Klebsiella variicola At-22]
gi|363647991|gb|EHL87178.1| diaminopimelate epimerase [Klebsiella sp. 4_1_44FAA]
gi|364515723|gb|AEW58851.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397341363|gb|EJJ34543.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|397342005|gb|EJJ35174.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|397344693|gb|EJJ37824.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|397358607|gb|EJJ51323.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|397359592|gb|EJJ52285.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|397363636|gb|EJJ56274.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|397374440|gb|EJJ66776.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|397378273|gb|EJJ70486.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|397392590|gb|EJJ84378.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|397403287|gb|EJJ94864.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|397409836|gb|EJK01136.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|397410206|gb|EJK01493.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|397427016|gb|EJK17807.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|397429864|gb|EJK20570.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|397437846|gb|EJK28389.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|397443838|gb|EJK34139.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|397449330|gb|EJK39470.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|402543913|gb|AFQ68062.1| Diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
1084]
gi|405589270|gb|EKB62840.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
WGLW1]
gi|405597663|gb|EKB70926.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
WGLW2]
gi|405608875|gb|EKB81798.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
WGLW3]
gi|405610244|gb|EKB83053.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
WGLW5]
gi|410117230|emb|CCM81320.1| Diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|410120468|emb|CCM89407.1| Diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|426303377|gb|EKV65550.1| diaminopimelate epimerase [Klebsiella pneumoniae JHCK1]
gi|426304499|gb|EKV66642.1| diaminopimelate epimerase [Klebsiella pneumoniae VA360]
gi|427538851|emb|CCM95059.1| Diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|448875424|gb|EMB10442.1| diaminopimelate epimerase [Klebsiella pneumoniae hvKP1]
Length = 274
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + V C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSQVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ S +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK ++MTGPA V+ G + L
Sbjct: 227 VGIQQGLLAETVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 274
>gi|167553870|ref|ZP_02347614.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|168467638|ref|ZP_02701475.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|418762494|ref|ZP_13318622.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418764323|ref|ZP_13320423.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418773191|ref|ZP_13329182.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418777940|ref|ZP_13333861.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418779087|ref|ZP_13334993.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418785627|ref|ZP_13341457.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418802627|ref|ZP_13358253.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|419788028|ref|ZP_14313727.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419792714|ref|ZP_14318345.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|195630012|gb|EDX48672.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|205321786|gb|EDZ09625.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|392618237|gb|EIX00644.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392618369|gb|EIX00770.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392730234|gb|EIZ87480.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392736284|gb|EIZ93448.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392742674|gb|EIZ99760.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392743439|gb|EJA00511.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392751527|gb|EJA08476.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392753931|gb|EJA10851.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392777179|gb|EJA33864.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
Length = 274
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 163/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + + VP + + ++++ V+ + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPAQVPFRANKAEKTYIMRA------VEQTILCGVVSMGNPHCVI------QVDN 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA ++ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274
>gi|300721448|ref|YP_003710723.1| diaminopimelate epimerase [Xenorhabdus nematophila ATCC 19061]
gi|297627940|emb|CBJ88486.1| diaminopimelate epimerase [Xenorhabdus nematophila ATCC 19061]
Length = 280
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 169/292 (57%), Gaps = 23/292 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
++ F K HGLGNDF++VD + +PE +L DRN GIG D ++ P D+
Sbjct: 6 YMQFSKMHGLGNDFMVVDAV-TQNVYFSPELICRLADRNTGIGFDQLLVVEAPYDPDLDF 64
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T +G +V + +D +++V+
Sbjct: 65 HYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIKVSTRSGQMVLSVTNDDQIRVN 123
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP + VP + + ++++ V+ V C V+MGNPHCV +
Sbjct: 124 MGEPDFEPQRVPFRANKAEKTYIIRA------VERTVLCGVVAMGNPHCV---------I 168
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+V+ +N A++ GP E+H FP R N F++I++ +++RV+ERGAG T ACG+GAC
Sbjct: 169 QVEDVNTADVEVLGPALENHERFPERVNVGFMQIMNRGHIRLRVFERGAGETRACGSGAC 228
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A V + + + + +VDLPGG L I W ++MTGPA V+ G + L
Sbjct: 229 AAVAVGIQQDLLDNQVSVDLPGGSLQIRWDGPGKPLFMTGPATHVYDGMIHL 280
>gi|410619826|ref|ZP_11330717.1| diaminopimelate epimerase [Glaciecola polaris LMG 21857]
gi|410160604|dbj|GAC34855.1| diaminopimelate epimerase [Glaciecola polaris LMG 21857]
Length = 276
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 168/289 (58%), Gaps = 19/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF+++DN + + E+ ++L DRNFGIG D ++ P + D+
Sbjct: 3 VQFSKMHGLGNDFVVIDNV-TQNVFFSKEKISQLADRNFGIGFDQLLVVEPPYDPEQDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSE CGNG RCFARF+ +++ L + V T AG +V + DG++ V+M
Sbjct: 62 YRIFNSDGSEVSQCGNGARCFARFV-KMKGLTNRNKIVVSTKAGRLVLYHERDGQITVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP+ + + +P L ANK +++ + + + VSMGNPHCV L VD
Sbjct: 121 GEPMFEPAKIP--LKANKQENIYI--IRENEHTFFCGAVSMGNPHCV---------LLVD 167
Query: 258 KLNLAE---IGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ A+ IG H FP N F++I++ +K+RV+ERG G TLACG+GACA V
Sbjct: 168 DIETADVEGIGKMLVAHERFPEGANIGFMQILNSGHIKLRVYERGVGETLACGSGACAAV 227
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
++ + TVDLPGG L I W+ + + MTG AE VF G++ L
Sbjct: 228 AVGQMQKKLSKDVTVDLPGGTLKIRWQGPGSILKMTGTAEHVFDGNITL 276
>gi|430759418|ref|YP_007215275.1| Diaminopimelate epimerase [Thioalkalivibrio nitratireducens DSM
14787]
gi|430009042|gb|AGA31794.1| Diaminopimelate epimerase [Thioalkalivibrio nitratireducens DSM
14787]
Length = 278
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 121/289 (41%), Positives = 156/289 (53%), Gaps = 21/289 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTD--Y 136
L F K HGLGNDF+++D + PE L DR+FGIG D V+ V+ + +
Sbjct: 3 LAFTKMHGLGNDFVVIDGVRQ-RVNLDPEAIRFLADRHFGIGCDQVLLVERPVDPSRALF 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E E CGNG RCFA F+ E + L + V T +G I ++ DG+V V+
Sbjct: 62 RYRIFNADGGEVEQCGNGARCFAVFVRE-QGLTQADTIPVETLSGPIELRVEADGQVTVN 120
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P +P D+ L+VDG + VSMGNPH V L V
Sbjct: 121 MGRPRFHPDQLPFLAPTEVDEY----PLEVDGEPLRIGAVSMGNPHAV---------LLV 167
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A +GP EHH FP R N F + + ++ +RVWERGAG TLACGTGACA
Sbjct: 168 DAVATAPVERLGPAIEHHPRFPDRVNVGFAAVRARDRIDLRVWERGAGETLACGTGACAA 227
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWK-EEDNHVYMTGPAEVVFYGSV 361
+ A G + R VDLPGG L + W E D V+MTGPA VF+G +
Sbjct: 228 MAVARRRGLVDTRVRVDLPGGSLVLSWSGESDQPVWMTGPATTVFHGRI 276
>gi|313113441|ref|ZP_07799030.1| diaminopimelate epimerase [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310624168|gb|EFQ07534.1| diaminopimelate epimerase [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 279
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 126/287 (43%), Positives = 158/287 (55%), Gaps = 18/287 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVI-FAMPGVNGTDYT 137
L F K G ND+I +D R S P + KL R+F IGADG+I G D
Sbjct: 3 LSFTKMQGCANDYIYLDCRKSGVPENIAALSEKLSRRHFSIGADGIICICAAQTAGADGM 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
MRIFN+DGSE MCGNG+RC A ++ + K++ + T +GL + G +V+M
Sbjct: 63 MRIFNADGSEGRMCGNGIRCVAEWL--YTHGIAKETLAIDTLSGLKTVTHKGAGLWQVEM 120
Query: 198 GEPILKASDVPTSLSANK--DQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
G S +P SL A ++ +V EL VDG W+VTC+S+GNPHCVT
Sbjct: 121 G----AYSAMPASLPAVNMGEEPLVDKELTVDGKTWHVTCISVGNPHCVTVVED------ 170
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD L L EIGP FEHH+ FP R NTEFV+++ + LKMRVWERG+G T ACGTG CA V
Sbjct: 171 VDSLKLEEIGPAFEHHANFPERINTEFVQVVDATHLKMRVWERGSGETWACGTGTCATVA 230
Query: 316 AAVLEG--HAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
A G A V L GG L I + MTG AE V G+
Sbjct: 231 ALTELGICPAGEDIHVQLRGGVLTIR-VLPGRQLLMTGAAETVCEGT 276
>gi|407794793|ref|ZP_11141814.1| diaminopimelate epimerase [Idiomarina xiamenensis 10-D-4]
gi|407210729|gb|EKE80604.1| diaminopimelate epimerase [Idiomarina xiamenensis 10-D-4]
Length = 275
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 120/292 (41%), Positives = 163/292 (55%), Gaps = 24/292 (8%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L+F K HGLGNDF+++DN + + EQ +L DR+ GIG D ++ P + D+
Sbjct: 2 LLNFTKMHGLGNDFVVIDNV-TQNVFLNEEQIRQLADRHRGIGFDQLLLVEPPYDPDLDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ L+ L+ KQ V T AG + ++ D +V VD
Sbjct: 61 HYRIFNADGSEVAQCGNGARCFARFV-RLKGLSHKQHLKVSTKAGKMTLHLEKDNQVTVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP+ +DVP + + V+++ + C V MGNPHCV L
Sbjct: 120 MGEPLFNPADVPFRANKTELTYVIRA------AEQTFLCGVVGMGNPHCV---------L 164
Query: 255 KVDKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
VD + +AE G H FP N F++ ++ + +RV+ERG G T ACG+GAC
Sbjct: 165 HVDDIAQAPVAEHGRLLTQHERFPEGVNVGFMQTLNRQHVHLRVFERGVGETQACGSGAC 224
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A VV +L+G + VDLPGG L I W+ E V MTGPAE VF G + L
Sbjct: 225 AAVVVGILQGKLDNLVQVDLPGGRLTIRWR-EGQPVKMTGPAEWVFDGQITL 275
>gi|288550566|ref|ZP_05970924.2| diaminopimelate epimerase [Enterobacter cancerogenus ATCC 35316]
gi|288314631|gb|EFC53569.1| diaminopimelate epimerase [Enterobacter cancerogenus ATCC 35316]
Length = 276
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 163/292 (55%), Gaps = 23/292 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 2 MMQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+
Sbjct: 61 HYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTDDELVRVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP + S VP + + ++++ + V C VSMGNPHCV +
Sbjct: 120 MGEPNFEPSAVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCV---------I 164
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+VD + A + GP E H FP R N F++++ +++RV+ERGAG T ACG+GAC
Sbjct: 165 QVDDVETAAVETLGPVLESHDRFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGAC 224
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A V + +G V+LPGG LDI WK +YMTGPA V+ G + L
Sbjct: 225 AAVAVGISQGLLAEEVRVELPGGRLDIAWKGPGQPLYMTGPAAHVYDGFIHL 276
>gi|390569626|ref|ZP_10249911.1| diaminopimelate epimerase [Burkholderia terrae BS001]
gi|389938486|gb|EIN00330.1| diaminopimelate epimerase [Burkholderia terrae BS001]
Length = 286
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 121/291 (41%), Positives = 164/291 (56%), Gaps = 15/291 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HG GNDF+++D T+P +T Q L +R+FG+GAD + + P V G D+
Sbjct: 3 LKFTKMHGAGNDFVVLDG--YTQPLNLTEAQVRALANRHFGVGADQLLVVEKPTVEGVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN DG E E CGNG RCF +F+ + L KQS V G+I +Q +G+V VD
Sbjct: 61 RYRIFNCDGGEVEHCGNGARCFVKFVRDTR-LTDKQSVRVQVQKGVITLTMQANGEVVVD 119
Query: 197 MGEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
MG P+ + + VP + L A + + LDV+G V+ VSMGNPH V
Sbjct: 120 MGAPVFEPAQVPFDASGLDARGEGNDALYPLDVNGATRWVSVVSMGNPHAVQIVDD---- 175
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V+ + GP E+H FP R N F++I+S S++K+RV+ERGAG TLACGTGACA
Sbjct: 176 --VEAFPVLVDGPVIENHPRFPQRVNAGFMQIVSRSEIKLRVYERGAGETLACGTGACAA 233
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWK-EEDNHVYMTGPAEVVFYGSVLL 363
V A + G + V GG L I W + ++ + M GPA VF G + L
Sbjct: 234 VAAGIRRGLLDAPVKVHTHGGTLTITWDGKPESALMMAGPAATVFEGEIEL 284
>gi|94309098|ref|YP_582308.1| diaminopimelate epimerase [Cupriavidus metallidurans CH34]
gi|166225747|sp|Q1LS37.1|DAPF_RALME RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|93352950|gb|ABF07039.1| diaminopimelate epimerase [Cupriavidus metallidurans CH34]
Length = 288
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 162/290 (55%), Gaps = 12/290 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
L F K HG GNDFI++D + + +T Q L +R+FGIGAD + I + D+
Sbjct: 3 LQFTKMHGAGNDFIVLDGIHQ-KLDLTDAQWRALANRHFGIGADQILIVEKSSRDDVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI N+DG E E CGNG RCF RF+ + + KQS V G+I ++QDDG+V VDM
Sbjct: 62 YRIVNADGGEVEHCGNGARCFVRFVTD-RGMTDKQSVRVEVMNGVITLKLQDDGQVTVDM 120
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
GEP L + VP L + L+V+G ++ VSMGNPH V
Sbjct: 121 GEPELTPARVPFIADGLPTRAEAQDTLYGLEVNGRTEWISPVSMGNPHAVQIVDD----- 175
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V++ + + GP EHH FP R N F++I+ + +++RV+ERGAG TLACGTGACA V
Sbjct: 176 -VEQFPVLQDGPVIEHHKSFPNRVNAGFMQIVDRNTVRLRVFERGAGETLACGTGACAAV 234
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VA + G + V GG L I W+ V MTGPA VF G++ L+
Sbjct: 235 VAGIRRGLLDSPVKVHTHGGDLTIAWQGAGQPVQMTGPATTVFEGTIDLS 284
>gi|215489137|ref|YP_002331568.1| diaminopimelate epimerase [Escherichia coli O127:H6 str. E2348/69]
gi|312969463|ref|ZP_07783665.1| diaminopimelate epimerase [Escherichia coli 2362-75]
gi|417758236|ref|ZP_12406296.1| diaminopimelate epimerase [Escherichia coli DEC2B]
gi|418999315|ref|ZP_13546891.1| diaminopimelate epimerase [Escherichia coli DEC1A]
gi|419004615|ref|ZP_13552122.1| diaminopimelate epimerase [Escherichia coli DEC1B]
gi|419010296|ref|ZP_13557703.1| diaminopimelate epimerase [Escherichia coli DEC1C]
gi|419015998|ref|ZP_13563331.1| diaminopimelate epimerase [Escherichia coli DEC1D]
gi|419020923|ref|ZP_13568219.1| diaminopimelate epimerase [Escherichia coli DEC1E]
gi|419026377|ref|ZP_13573589.1| diaminopimelate epimerase [Escherichia coli DEC2A]
gi|419031526|ref|ZP_13578665.1| diaminopimelate epimerase [Escherichia coli DEC2C]
gi|419037118|ref|ZP_13584188.1| diaminopimelate epimerase [Escherichia coli DEC2D]
gi|419042224|ref|ZP_13589238.1| diaminopimelate epimerase [Escherichia coli DEC2E]
gi|432804044|ref|ZP_20037993.1| diaminopimelate epimerase [Escherichia coli KTE84]
gi|254767103|sp|B7UNC6.1|DAPF_ECO27 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|215267209|emb|CAS11657.1| diaminopimelate epimerase [Escherichia coli O127:H6 str. E2348/69]
gi|312286010|gb|EFR13928.1| diaminopimelate epimerase [Escherichia coli 2362-75]
gi|377838934|gb|EHU04038.1| diaminopimelate epimerase [Escherichia coli DEC1C]
gi|377839068|gb|EHU04170.1| diaminopimelate epimerase [Escherichia coli DEC1A]
gi|377841731|gb|EHU06792.1| diaminopimelate epimerase [Escherichia coli DEC1B]
gi|377852848|gb|EHU17760.1| diaminopimelate epimerase [Escherichia coli DEC1D]
gi|377855901|gb|EHU20764.1| diaminopimelate epimerase [Escherichia coli DEC1E]
gi|377858247|gb|EHU23090.1| diaminopimelate epimerase [Escherichia coli DEC2A]
gi|377870211|gb|EHU34899.1| diaminopimelate epimerase [Escherichia coli DEC2B]
gi|377872186|gb|EHU36835.1| diaminopimelate epimerase [Escherichia coli DEC2C]
gi|377874251|gb|EHU38880.1| diaminopimelate epimerase [Escherichia coli DEC2D]
gi|377885995|gb|EHU50484.1| diaminopimelate epimerase [Escherichia coli DEC2E]
gi|431345135|gb|ELG32062.1| diaminopimelate epimerase [Escherichia coli KTE84]
Length = 274
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVFERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|262406324|ref|ZP_06082873.1| diaminopimelate epimerase [Bacteroides sp. 2_1_22]
gi|294646567|ref|ZP_06724203.1| diaminopimelate epimerase [Bacteroides ovatus SD CC 2a]
gi|294806632|ref|ZP_06765466.1| diaminopimelate epimerase [Bacteroides xylanisolvens SD CC 1b]
gi|298482836|ref|ZP_07001019.1| diaminopimelate epimerase [Bacteroides sp. D22]
gi|345511067|ref|ZP_08790620.1| diaminopimelate epimerase [Bacteroides sp. D1]
gi|229446301|gb|EEO52092.1| diaminopimelate epimerase [Bacteroides sp. D1]
gi|262355027|gb|EEZ04118.1| diaminopimelate epimerase [Bacteroides sp. 2_1_22]
gi|292638090|gb|EFF56472.1| diaminopimelate epimerase [Bacteroides ovatus SD CC 2a]
gi|294446168|gb|EFG14801.1| diaminopimelate epimerase [Bacteroides xylanisolvens SD CC 1b]
gi|298271036|gb|EFI12614.1| diaminopimelate epimerase [Bacteroides sp. D22]
Length = 271
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 125/292 (42%), Positives = 168/292 (57%), Gaps = 38/292 (13%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAA-KLCDRNFGIGADGVIFAMPGV-NGTDY 136
+ F K HG GND+I VD + P PE+ A + + GIG+DG+I + GV + D+
Sbjct: 5 IKFTKMHGAGNDYIYVDT--TRYPIADPEKKAIEWSKFHTGIGSDGLI--LIGVSDKADF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
+MRIFN+DGSE MCGNG RC +++ E L K T+ T +G+ + ++Q +GK
Sbjct: 61 SMRIFNADGSEAMMCGNGSRCVGKYVYEY-GLTDKTEITLDTLSGIKILKLQVEGKTVST 119
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKW--NVTCVSMGNPHCVTFGTKE 250
V VDMG P Q E+D G K+ T VSMGNPH VTF
Sbjct: 120 VTVDMGSP----------------QET--GEIDW-GKKYPFQSTKVSMGNPHLVTFIDD- 159
Query: 251 GQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
+ ++NL EIGP+ E+H +FP RTN EF +I+ ++MRVWERG+G T ACGTGA
Sbjct: 160 -----ITRINLPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGA 214
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
CA VAA + G A R+ V + GG + IEW E H+ MTGPA VF G ++
Sbjct: 215 CATAVAAFINGLAGRKSDVIMDGGTVTIEWDETSGHILMTGPATKVFDGEIV 266
>gi|254428919|ref|ZP_05042626.1| diaminopimelate epimerase [Alcanivorax sp. DG881]
gi|196195088|gb|EDX90047.1| diaminopimelate epimerase [Alcanivorax sp. DG881]
Length = 282
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 158/289 (54%), Gaps = 19/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPR----ITPEQAAKLCDRNFGIGADGVIFAMPGVNG- 133
L F K HGLGNDF+++D T P + ++ +L DRNFG+G D ++ P +
Sbjct: 3 LRFTKMHGLGNDFMVIDGIRQTLPETGLPLPADEIRRLGDRNFGVGFDQMLIVQPSRSAD 62
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKV 193
D+ RI N+DGSE CGNG RCFARF+ E + L K+ V T AG + + DD +V
Sbjct: 63 ADFRYRILNADGSEVSQCGNGARCFARFVRE-QGLTDKREIQVETAAGQMTLTVTDDEQV 121
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVK-WNVTCVSMGNPHCVTFGTKEGQ 252
VDMG P +P + A D S V G + W V V +GNPHC
Sbjct: 122 TVDMGAPRWAPDAIPMTAKAEAD-----SYFLVSGTQAWEVGAVGLGNPHCTLLVEN--- 173
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + +GP E H FP R N F++I+S +++++RV+ERGAG TLACG+GACA
Sbjct: 174 ---VDNAPVESVGPLLESHEQFPERVNVGFMQIVSRNEIRLRVYERGAGETLACGSGACA 230
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VV G + TV LPGG L + + + + MTGPA V+ G++
Sbjct: 231 AVVIGQRRGWLDAAVTVHLPGGTLQVCYDGQGG-IQMTGPASHVYDGAI 278
>gi|296105307|ref|YP_003615453.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|392981239|ref|YP_006479827.1| diaminopimelate epimerase [Enterobacter cloacae subsp. dissolvens
SDM]
gi|295059766|gb|ADF64504.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|392327172|gb|AFM62125.1| diaminopimelate epimerase [Enterobacter cloacae subsp. dissolvens
SDM]
Length = 274
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 164/291 (56%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVNQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + V C VSMGNPHCV ++
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A + GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA
Sbjct: 164 VDNVETAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 224 AVAVGISQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 274
>gi|187922356|ref|YP_001893998.1| diaminopimelate epimerase [Burkholderia phytofirmans PsJN]
gi|229807509|sp|B2T1P5.1|DAPF_BURPP RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|187713550|gb|ACD14774.1| Diaminopimelate epimerase [Burkholderia phytofirmans PsJN]
Length = 299
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 159/292 (54%), Gaps = 16/292 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HG GNDF+++D T+P +TP Q L DR+FG+GAD ++ P V G D+
Sbjct: 3 LKFTKMHGAGNDFVVLDG--YTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN DG E E CGNG RCF +F+ + L ++S V G I +Q++G+V VD
Sbjct: 61 RYRIFNCDGGEVEHCGNGARCFVKFVRD-SGLTDQRSVRVQVQKGTITLTMQENGEVLVD 119
Query: 197 MGEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
MG P+ VP L + + LDV+G ++ VSMGNPH V
Sbjct: 120 MGTPVFDPERVPFATKGLQGRGEGADTLWPLDVNGTTRWISVVSMGNPHAVQVVDD---- 175
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V+ + GP E H+ FP R N F++I+ S++K+RV+ERGAG TLACGTGACA
Sbjct: 176 --VEAFPVLVEGPVIERHARFPQRVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAA 233
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWK--EEDNHVYMTGPAEVVFYGSVLL 363
V A + G + V GG L I W + D + M GPA VF G + L
Sbjct: 234 VAAGIRRGLLDAPVLVHTHGGKLTITWDAAQADQPLLMAGPAATVFEGEIEL 285
>gi|345875458|ref|ZP_08827251.1| diaminopimelate epimerase [Neisseria weaveri LMG 5135]
gi|417957150|ref|ZP_12600077.1| diaminopimelate epimerase [Neisseria weaveri ATCC 51223]
gi|343968951|gb|EGV37172.1| diaminopimelate epimerase [Neisseria weaveri ATCC 51223]
gi|343969012|gb|EGV37232.1| diaminopimelate epimerase [Neisseria weaveri LMG 5135]
Length = 283
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 120/288 (41%), Positives = 166/288 (57%), Gaps = 14/288 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNST-EPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF++VD + +P P K +R+ GIG D ++ + D+
Sbjct: 5 LKFTKMHGLGNDFMVVDGISQVFDPLAAP--LTKWSNRHTGIGFDQLLLVEKASSEAVDF 62
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCF RF+A+ ++L K+ V T G+I P++ D G V V+
Sbjct: 63 RYRIFNADGSEVEQCGNGARCFVRFVAD-KHLTDKKEIVVETAKGIIFPKLADSGLVIVN 121
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG+P L+ S++P + A + + ++ + K V+CV+MGNPH V + + V
Sbjct: 122 MGQPKLRPSEIPFAAMAEEPDDALVYQVVLGSDKVGVSCVNMGNPHAVLV-VDDVASAPV 180
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
D+L G + E H FP R N F++++ +++RV+ERG G T ACGTGACA VVA
Sbjct: 181 DRL-----GAQIEPHIQFPQRVNVGFMQVVDKEHIRLRVYERGVGETQACGTGACAAVVA 235
Query: 317 AVLEG--HAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
V G A V LPGG L IEW + V MTGPAE VF G +L
Sbjct: 236 GVRLGLLSAGVPVQVSLPGGELFIEWAPGQD-VMMTGPAETVFEGEIL 282
>gi|354721308|ref|ZP_09035523.1| diaminopimelate epimerase [Enterobacter mori LMG 25706]
Length = 274
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 164/291 (56%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPELIRRLADRHVGVGFDQLLVVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVNQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + V C VSMGNPHCV ++
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A + GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA
Sbjct: 164 VDDVQTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 224 AVAVGISQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPATHVYDGFIHL 274
>gi|424801966|ref|ZP_18227508.1| Diaminopimelate epimerase [Cronobacter sakazakii 696]
gi|423237687|emb|CCK09378.1| Diaminopimelate epimerase [Cronobacter sakazakii 696]
Length = 274
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 167/291 (57%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +P+ +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPDMIRRLADRHQGVGFDQLLVVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D +V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKREIRVSTANGRMVLTVNEDEQVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP+ + S VP + + ++++ + V C VSMGNPHCV ++
Sbjct: 119 GEPVFEPSLVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A + GP E H FP R N F+++I+ +++RV+ERGAG T ACG+GAC
Sbjct: 164 VDDVATAPVETLGPLMESHERFPERANIGFMQVINTEHIRLRVFERGAGETQACGSGACG 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G + VDLPGG LDI WK N ++MTGPA V+ G + L
Sbjct: 224 AVAVGIQQGLLSAQVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDGFIHL 274
>gi|289624629|ref|ZP_06457583.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str.
NCPPB 3681]
gi|289651145|ref|ZP_06482488.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str.
2250]
gi|422585195|ref|ZP_16660283.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330870013|gb|EGH04722.1| diaminopimelate epimerase [Pseudomonas syringae pv. aesculi str.
0893_23]
Length = 276
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 128/290 (44%), Positives = 168/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKSGIIELDIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P VP + + + ++VDG + VSMGNPH V L+V
Sbjct: 120 MGPPRF----VPEEIPFEAPEQATRYNVEVDGQNIELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A E+GPK EHH FPAR N F+ ++ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINNAPVHELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276
>gi|71733279|ref|YP_277092.1| diaminopimelate epimerase [Pseudomonas syringae pv. phaseolicola
1448A]
gi|257482609|ref|ZP_05636650.1| diaminopimelate epimerase [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
gi|416013736|ref|ZP_11561716.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str.
B076]
gi|416022551|ref|ZP_11567700.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str.
race 4]
gi|422406164|ref|ZP_16483198.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str.
race 4]
gi|422594506|ref|ZP_16668797.1| diaminopimelate epimerase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422683416|ref|ZP_16741676.1| diaminopimelate epimerase [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
gi|123634628|sp|Q48C02.1|DAPF_PSE14 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|71553832|gb|AAZ33043.1| diaminopimelate epimerase [Pseudomonas syringae pv. phaseolicola
1448A]
gi|320326563|gb|EFW82614.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str.
B076]
gi|320331371|gb|EFW87312.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330881321|gb|EGH15470.1| diaminopimelate epimerase [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330984814|gb|EGH82917.1| diaminopimelate epimerase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331012750|gb|EGH92806.1| diaminopimelate epimerase [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
Length = 276
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 128/290 (44%), Positives = 168/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKSGIIELDIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P VP + + + ++VDG + VSMGNPH V L+V
Sbjct: 120 MGPPRF----VPEEIPFEAAEQATRYNVEVDGQNIELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A E+GPK EHH FPAR N F+ ++ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINNAPVHELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276
>gi|451928995|pdb|4IJZ|A Chain A, Crystal Structure Of Diaminopimelate Epimerase From
Escherichia Coli
gi|451928996|pdb|4IJZ|B Chain B, Crystal Structure Of Diaminopimelate Epimerase From
Escherichia Coli
Length = 280
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 114/286 (39%), Positives = 161/286 (56%), Gaps = 17/286 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+ +G V+LPGG LDI WK + +YMTGPA V+ G +
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFI 272
>gi|401677001|ref|ZP_10808981.1| diaminopimelate epimerase [Enterobacter sp. SST3]
gi|400215755|gb|EJO46661.1| diaminopimelate epimerase [Enterobacter sp. SST3]
Length = 274
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 164/291 (56%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVNQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + V C VSMGNPHCV ++
Sbjct: 119 GEPNFEPSVVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A + GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA
Sbjct: 164 VDDVETAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 224 AVAVGISQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 274
>gi|366158874|ref|ZP_09458736.1| diaminopimelate epimerase [Escherichia sp. TW09308]
gi|432374245|ref|ZP_19617276.1| diaminopimelate epimerase [Escherichia coli KTE11]
gi|430893667|gb|ELC15991.1| diaminopimelate epimerase [Escherichia coli KTE11]
Length = 274
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 163/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +P+ +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E+H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLENHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|423296043|ref|ZP_17274128.1| diaminopimelate epimerase [Bacteroides ovatus CL03T12C18]
gi|392670653|gb|EIY64131.1| diaminopimelate epimerase [Bacteroides ovatus CL03T12C18]
Length = 286
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 165/295 (55%), Gaps = 46/295 (15%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITP-EQAAKLCDRNFGIGADGVIFAMPGV-NGTDY 136
+ F K HG GND+I VD S P P ++A + + GIG+DG+I + GV + D+
Sbjct: 22 IKFTKMHGAGNDYIYVDT--SQYPIADPAKKAIEWSKFHTGIGSDGLI--LIGVSDKADF 77
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
+MRIFN+DGSE MCGNG RC +++ E L K T+ T +G+ + ++ +GK
Sbjct: 78 SMRIFNADGSEAMMCGNGSRCVGKYVYEY-GLTDKTEITLDTRSGIKILKLHVEGKTVSA 136
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWN------VTCVSMGNPHCVTF 246
V VDMG P L+ + ++W T VSMGNPH VTF
Sbjct: 137 VTVDMGSP-----------------------LETEEIQWGGKYPFRSTKVSMGNPHLVTF 173
Query: 247 GTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLAC 306
+ ++NL EIGP+ E+H +FP RTN EF +I+S ++MRVWERG+G T AC
Sbjct: 174 VED------ITQINLPEIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQAC 227
Query: 307 GTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
GTGACA VAA + G R+ V + GG + IEW E H+ MTGPA VF G +
Sbjct: 228 GTGACATAVAAFINGLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEI 282
>gi|385207305|ref|ZP_10034173.1| diaminopimelate epimerase [Burkholderia sp. Ch1-1]
gi|385179643|gb|EIF28919.1| diaminopimelate epimerase [Burkholderia sp. Ch1-1]
Length = 295
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 158/292 (54%), Gaps = 16/292 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HG GNDF+++D T+P +TP Q L DR+FG+GAD ++ P V G D+
Sbjct: 3 LKFTKMHGAGNDFVVLDG--YTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN DG E E CGNG RCF +F+ E L ++S V G + +Q++G+V VD
Sbjct: 61 RYRIFNCDGGEVEHCGNGARCFVKFVRE-RGLTDQRSVRVQVQKGTVTLTMQENGEVLVD 119
Query: 197 MGEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
MG P+ VP L ++ + LDV G ++ VSMGNPH V
Sbjct: 120 MGTPVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRWISAVSMGNPHAVQVVDD---- 175
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V+ + GP E H+ FP R N F++I+ S++++RV+ERGAG TLACGTGACA
Sbjct: 176 --VEAFPVLVEGPVIERHARFPQRVNAGFMQIVGRSEIRLRVYERGAGETLACGTGACAA 233
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWK--EEDNHVYMTGPAEVVFYGSVLL 363
V A + G + V GG L I W E + M GPA VF G + L
Sbjct: 234 VAAGIRRGRLDSPVLVHTHGGNLTISWDNTREGEPLLMAGPAVTVFEGEIEL 285
>gi|319901904|ref|YP_004161632.1| diaminopimelate epimerase [Bacteroides helcogenes P 36-108]
gi|319416935|gb|ADV44046.1| diaminopimelate epimerase [Bacteroides helcogenes P 36-108]
Length = 281
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 166/289 (57%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDR-NFGIGADGVIFAMPGVNGTDYT 137
+ F K HG GND+I VD + P PE+ +K + GIG+DG++ + + D++
Sbjct: 5 IKFTKMHGAGNDYIYVDT--TQYPVENPERLSKTWSTPHTGIGSDGLVL-IGKSDKADFS 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ--DDGKVK- 194
MRIFN+DGSE MCGN RC +++ + L K T+ T +G+ + ++ DGKV
Sbjct: 62 MRIFNADGSEAMMCGNASRCIGKYLFDY-GLTKKTEITLDTLSGIKILKLHVAADGKVNT 120
Query: 195 --VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
VDMG P +D P + N + + + + ++G ++ T VSMGNPH V F
Sbjct: 121 VTVDMGIP----ADEPVNYDGNGAKPMKEQPILIEGKRYVGTTVSMGNPHIVIFVND--- 173
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
+ +LA IGPK E+H +FP R N EF +++ Q++MRVWERG+G T ACGTGACA
Sbjct: 174 ---ITDTDLAAIGPKIENHPLFPGRINVEFAQVLGKGQIRMRVWERGSGITQACGTGACA 230
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VAA L G A R+ + + GG +DI+W HV MTG A VF G +
Sbjct: 231 TAVAAFLTGRAGRQSIIIMDGGSVDIDWDVASKHVLMTGGATKVFEGEI 279
>gi|399003749|ref|ZP_10706403.1| diaminopimelate epimerase [Pseudomonas sp. GM18]
gi|398121987|gb|EJM11596.1| diaminopimelate epimerase [Pseudomonas sp. GM18]
Length = 276
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 169/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T +G+I +I++DG++ V+
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKSGIIELDIRNDGQISVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L VP + V ++DVDG + VSMGNPH V L+V
Sbjct: 120 MGAPRL----VPAEIPFEAPSQAVSYQVDVDGTPVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I ++ ++RVWERG G T ACGTGACA
Sbjct: 167 SDINNAPVHELGPKIEHHPRFPARVNVGFLQVIDRNRAQLRVWERGTGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276
>gi|237719397|ref|ZP_04549878.1| diaminopimelate epimerase [Bacteroides sp. 2_2_4]
gi|293373283|ref|ZP_06619641.1| diaminopimelate epimerase [Bacteroides ovatus SD CMC 3f]
gi|229451257|gb|EEO57048.1| diaminopimelate epimerase [Bacteroides sp. 2_2_4]
gi|292631679|gb|EFF50299.1| diaminopimelate epimerase [Bacteroides ovatus SD CMC 3f]
Length = 269
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 165/295 (55%), Gaps = 46/295 (15%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITP-EQAAKLCDRNFGIGADGVIFAMPGV-NGTDY 136
+ F K HG GND+I VD S P P ++A + + GIG+DG+I + GV + D+
Sbjct: 5 IKFTKMHGAGNDYIYVDT--SQYPIADPAKKAIEWSKFHTGIGSDGLI--LIGVSDKADF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
+MRIFN+DGSE MCGNG RC +++ E L K T+ T +G+ + ++ +GK
Sbjct: 61 SMRIFNADGSEAMMCGNGSRCVGKYVYEY-GLTDKTEITLDTRSGIKILKLHVEGKTVSA 119
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWN------VTCVSMGNPHCVTF 246
V VDMG P L+ + ++W T VSMGNPH VTF
Sbjct: 120 VTVDMGSP-----------------------LETEEIQWGGKYPFRSTKVSMGNPHLVTF 156
Query: 247 GTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLAC 306
+ ++NL EIGP+ E+H +FP RTN EF +I+S ++MRVWERG+G T AC
Sbjct: 157 VED------ITRINLPEIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQAC 210
Query: 307 GTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
GTGACA VAA + G R+ V + GG + IEW E H+ MTGPA VF G +
Sbjct: 211 GTGACATAVAAFINGLTGRKSDVIMDGGTVTIEWNEISGHILMTGPATKVFDGEI 265
>gi|121595979|ref|YP_987875.1| diaminopimelate epimerase [Acidovorax sp. JS42]
gi|120608059|gb|ABM43799.1| diaminopimelate epimerase [Acidovorax sp. JS42]
Length = 315
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/294 (41%), Positives = 165/294 (56%), Gaps = 21/294 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI--TPEQAAKLCDRNFGIGADGVIFAMPGVN-GTD 135
+ F K G GNDF+++D T+ R+ TP Q L DR+FG+GAD ++ P G D
Sbjct: 26 IRFTKMQGAGNDFVVLDE---TQGRLGLTPAQYRFLADRHFGVGADQILIVRPSPGAGID 82
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ I N+DG + E CGNG RCFAR++ + + L + + V T AG+I P + DG+V V
Sbjct: 83 FEYVIHNADGGQVEQCGNGARCFARYVRD-KGLTAQDTIRVQTMAGVIAPHLTADGRVTV 141
Query: 196 DMGEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVT----CVSMGNPHCVTFGT 248
DMG P L+ + VP T L+ S K L +DG T VSMGNPH V
Sbjct: 142 DMGRPELEPARVPFDTTGLAPVSQGSGQKWPLALDGQASAATILIAVVSMGNPHAVQLVD 201
Query: 249 KEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
VD +A+ GP E H FP R N +++I++ ++++RV+ERGAG TLACGT
Sbjct: 202 D------VDTAPVAQTGPLIESHPRFPQRVNAGYLQIVNRGEVRLRVYERGAGETLACGT 255
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEE-DNHVYMTGPAEVVFYGSV 361
GACA VVA + G + R V GG L I+W + V+MTGPA VF G +
Sbjct: 256 GACAAVVAGIRLGLLDARVQVHTRGGLLTIDWAGGLQDPVFMTGPATTVFEGEI 309
>gi|365846079|ref|ZP_09386585.1| diaminopimelate epimerase [Yokenella regensburgei ATCC 43003]
gi|364574426|gb|EHM51886.1| diaminopimelate epimerase [Yokenella regensburgei ATCC 43003]
Length = 275
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 163/292 (55%), Gaps = 23/292 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MMQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLSDRHLGVGFDQLLIVEPPYDPELDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+
Sbjct: 60 HYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTDDDLVRVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP + S VP + + ++++ + + C VSMGNPHCV +
Sbjct: 119 MGEPNFEPSQVPFRANKAEKTYIMRA------AEQTIMCGVVSMGNPHCV---------I 163
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+VD + A + GP E H FP R N F++++ +++RV+ERGAG T ACG+GAC
Sbjct: 164 QVDDVETAAVETLGPVLESHERFPERANIGFMQVVKRDHIRLRVYERGAGETQACGSGAC 223
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A V + +G V+LPGG LDI WK ++MTGPA V+ G + L
Sbjct: 224 AAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 275
>gi|209965482|ref|YP_002298397.1| diaminopimelate epimerase [Rhodospirillum centenum SW]
gi|254767118|sp|B6IP82.1|DAPF_RHOCS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|209958948|gb|ACI99584.1| diaminopimelate epimerase [Rhodospirillum centenum SW]
Length = 291
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/282 (41%), Positives = 156/282 (55%), Gaps = 17/282 (6%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMR 139
F+K HGLGNDF+++D R P +T A + DR+ G+G D ++ P + D MR
Sbjct: 5 FLKMHGLGNDFVVLDARRDPLP-LTTAAARAIADRHTGVGCDQIVLLEPPRHPAADLFMR 63
Query: 140 IFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
I N DGSE CGN RC A +A + +G+ TV T GL+ ++ DG V VDMG
Sbjct: 64 ILNPDGSESGACGNATRCVASLVA---DGSGRAEVTVETATGLLRCRLRADGSVTVDMGP 120
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
L + +P L+A D V + G + CV MGNPH V F + +
Sbjct: 121 ARLDWTQIP--LAAAHDTLRVPAGA---GPLQDACCVGMGNPHAVFFVDD------AEAV 169
Query: 260 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVL 319
+LA +GP EHHS+FP R N E ++++P ++MRVWERGAG T ACG+G+CA +VAA
Sbjct: 170 DLATLGPVLEHHSLFPQRCNIEVAQVLAPDHIRMRVWERGAGITRACGSGSCATLVAAAR 229
Query: 320 EGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
G R ++L GG L IEW D HV MTGP F G +
Sbjct: 230 RGLTGRAAWIELDGGRLWIEW-HGDGHVLMTGPVATAFTGEL 270
>gi|255691506|ref|ZP_05415181.1| diaminopimelate epimerase [Bacteroides finegoldii DSM 17565]
gi|260622897|gb|EEX45768.1| diaminopimelate epimerase [Bacteroides finegoldii DSM 17565]
Length = 271
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/292 (42%), Positives = 168/292 (57%), Gaps = 38/292 (13%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAA-KLCDRNFGIGADGVIFAMPGV-NGTDY 136
+ F K HG GND+I VD + P PE+ A + + GIG+DG+I + GV + D+
Sbjct: 5 IKFTKMHGAGNDYIYVDT--TRYPIADPEKKAIEWSKFHTGIGSDGLI--LIGVSDKADF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
+MRIFN+DGSE MCGNG RC +++ E L K T+ T +G+ + ++Q +GK
Sbjct: 61 SMRIFNADGSEAMMCGNGSRCVGKYVYEY-GLTDKTEITLDTLSGIKILKLQVEGKTVST 119
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKW--NVTCVSMGNPHCVTFGTKE 250
V VDMG P Q E+D G K+ T VSMGNPH VTF
Sbjct: 120 VTVDMGSP----------------QET--GEIDW-GKKYPFQSTKVSMGNPHLVTFIDD- 159
Query: 251 GQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
+ ++NL EIGP+ E+H +FP RTN EF +I+ ++MRVWERG+G T ACGTGA
Sbjct: 160 -----ITRINLPEIGPELENHPLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGA 214
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
CA VAA + G A R+ V + GG + +EW E H+ MTGPA VF G ++
Sbjct: 215 CATAVAAFINGLAGRKSDVIMDGGTVTVEWDETSGHILMTGPATKVFDGEIV 266
>gi|110835193|ref|YP_694052.1| diaminopimelate epimerase [Alcanivorax borkumensis SK2]
gi|122959296|sp|Q0VM18.1|DAPF_ALCBS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|110648304|emb|CAL17780.1| diaminopimelate epimerase [Alcanivorax borkumensis SK2]
Length = 281
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/287 (38%), Positives = 155/287 (54%), Gaps = 16/287 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPR----ITPEQAAKLCDRNFGIGADGVIFAMPGVNGT 134
L F K HGLGNDF+++D + P + ++ +L DR FG+G D ++ P
Sbjct: 3 LRFTKMHGLGNDFMVIDGIRQSLPETGLPLPADEIRRLADRKFGVGFDQMLIVQPAQGDA 62
Query: 135 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVK 194
D+ RI N+DGSE CGNG RCFARF+ E + L K+S V T AG + + DD ++
Sbjct: 63 DFRYRILNADGSEVSQCGNGARCFARFVRE-QGLTDKKSIRVETAAGQMTLSVTDDDQIT 121
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG P +P + A D + S W+V V +GNPHC
Sbjct: 122 VDMGAPRWAPDAIPMTAKAEADNYFLVSGTQA----WDVGAVGLGNPHCTLLVEN----- 172
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
VD + +GP E H FP R N F++I+S +++++RV+ERGAG TLACG+GACA V
Sbjct: 173 -VDTAPVDTVGPLLESHEQFPERANVGFMQIVSRNEIRLRVYERGAGETLACGSGACAAV 231
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V + TV LPGG L + + + + MTGPA V+ G++
Sbjct: 232 VIGQRRDWLDDTVTVHLPGGTLHVCYDGQGG-IQMTGPASHVYDGAI 277
>gi|304315451|ref|YP_003850598.1| diaminopimelate epimerase [Methanothermobacter marburgensis str.
Marburg]
gi|302588910|gb|ADL59285.1| diaminopimelate epimerase [Methanothermobacter marburgensis str.
Marburg]
Length = 290
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 164/293 (55%), Gaps = 23/293 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRI----TPEQAAKLCDRNFGIGADGVIFAMPGVNG 133
+ F K HGLGND++++D ST+ I PE ++C R F +GADGVIF P
Sbjct: 4 MVMFSKMHGLGNDYVVIDE--STQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPAAGD 61
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL--IVPEIQDDG 191
D RIFN+DGSE EMCGNG+RCF++F+ + + K+ V T AG+ + EI DDG
Sbjct: 62 GDIRFRIFNADGSEAEMCGNGIRCFSKFVYD-NAIVRKRKLDVETLAGIKTVELEIGDDG 120
Query: 192 KV---KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGT 248
V +VDMG K +P + + + L V+G +T +S+GNPH V F
Sbjct: 121 SVVSSRVDMGTATFKTDQIPMDVG---ECEFIDRFLPVEGEDIKLTALSVGNPHAVIFVD 177
Query: 249 KEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
G ++L +GP E+H +FP R N FVE++ PS++ M WERGAG T+ACGT
Sbjct: 178 DTGS------VDLKRLGPAIENHPLFPERINVHFVEVVDPSEIIMVTWERGAGPTMACGT 231
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHV--YMTGPAEVVFYG 359
GA A V+A V + V LPGG L I+ +E + YM G A +VF G
Sbjct: 232 GATASVIAGVKLEKLDDSVLVHLPGGELKIDVYQEGTELGAYMEGDAVLVFDG 284
>gi|300714800|ref|YP_003739603.1| diaminopimelate epimerase [Erwinia billingiae Eb661]
gi|299060636|emb|CAX57743.1| Diaminopimelate epimerase [Erwinia billingiae Eb661]
Length = 274
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 160/289 (55%), Gaps = 19/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K V T G +V + D V V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKNDIRVSTQTGRMVLSVTQDELVCVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEP VP ANK +++ + + V VSMGNPHCV L+VD
Sbjct: 119 GEPNFDPQQVP--FRANKAENLYLMRVAEQTIMCGV--VSMGNPHCV---------LQVD 165
Query: 258 KLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ A + GP E H FP R N F+E++S +++RV+ERGAG T ACG+GACA V
Sbjct: 166 SVKTAAVESLGPVLESHDRFPERVNVGFMEVVSREHIRLRVYERGAGETQACGSGACAAV 225
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ + + VDLPGG L+I WK + +YMTGPA V+ G + L
Sbjct: 226 AVGIQQALLAEKVRVDLPGGSLNIAWKGPGHPLYMTGPATHVYDGFIHL 274
>gi|30022977|ref|NP_834608.1| diaminopimelate epimerase [Bacillus cereus ATCC 14579]
gi|423657871|ref|ZP_17633170.1| diaminopimelate epimerase [Bacillus cereus VD200]
gi|81580413|sp|Q816D1.1|DAPF_BACCR RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|29898537|gb|AAP11809.1| Diaminopimelate epimerase [Bacillus cereus ATCC 14579]
gi|401288605|gb|EJR94351.1| diaminopimelate epimerase [Bacillus cereus VD200]
Length = 288
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/289 (43%), Positives = 165/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L + FT+ T AG++ E+ +DG V
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFTIETLAGIVTAEVTVEDGVVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTRAEIP--MLGESETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNEDEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE N V M GPAEV+ G
Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
>gi|299149107|ref|ZP_07042168.1| diaminopimelate epimerase [Bacteroides sp. 3_1_23]
gi|298512774|gb|EFI36662.1| diaminopimelate epimerase [Bacteroides sp. 3_1_23]
Length = 268
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 165/295 (55%), Gaps = 46/295 (15%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITP-EQAAKLCDRNFGIGADGVIFAMPGV-NGTDY 136
+ F K HG GND+I VD S P P ++A + + GIG+DG+I + GV + D+
Sbjct: 5 IKFTKMHGAGNDYIYVDT--SQYPIADPAKKAIEWSKFHTGIGSDGLI--LIGVSDKADF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
+MRIFN+DGSE MCGNG RC +++ E L K T+ T +G+ + ++ +GK
Sbjct: 61 SMRIFNADGSEAMMCGNGSRCVGKYVYEY-GLTDKTEITLDTRSGIKILKLHVEGKTVSA 119
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWN------VTCVSMGNPHCVTF 246
V VDMG P L+ + ++W T VSMGNPH VTF
Sbjct: 120 VTVDMGSP-----------------------LETEEIQWGGKYPFRSTKVSMGNPHLVTF 156
Query: 247 GTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLAC 306
+ ++NL EIGP+ E+H +FP RTN EF +I+S ++MRVWERG+G T AC
Sbjct: 157 VED------ITQINLPEIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQAC 210
Query: 307 GTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
GTGACA VAA + G R+ V + GG + IEW E H+ MTGPA VF G +
Sbjct: 211 GTGACATAVAAFINGLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEI 265
>gi|295095178|emb|CBK84268.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae NCTC
9394]
Length = 278
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 163/292 (55%), Gaps = 23/292 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 4 MMQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHVGVGFDQLLVVEPPYDPDLDF 62
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+
Sbjct: 63 HYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTDDELVRVN 121
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP S VP + + ++++ + V C VSMGNPHCV +
Sbjct: 122 MGEPNFDPSAVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCV---------I 166
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+VD + A + GP E H FP R N F++++ +++RV+ERGAG T ACG+GAC
Sbjct: 167 QVDDVQTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGAC 226
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A V + +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 AAVAVGISQGLLAEEVRVELPGGRLDIAWKGAGHPLYMTGPATHVYDGFIHL 278
>gi|188532372|ref|YP_001906169.1| diaminopimelate epimerase [Erwinia tasmaniensis Et1/99]
gi|229807512|sp|B2VI49.1|DAPF_ERWT9 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|188027414|emb|CAO95261.1| Diaminopimelate epimerase [Erwinia tasmaniensis Et1/99]
Length = 274
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 161/291 (55%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K V T +G +V I D V V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKNEIRVSTQSGRMVLSITQDELVCVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + +P ANK +++ + + V C VSMGNPHCV L+
Sbjct: 119 GEPNFEPQQIP--FRANKAENIYL----MRAAEQTVMCGVVSMGNPHCV---------LQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A + GP E H FP R N F+E++ +++RV+ERGAG T ACG+GACA
Sbjct: 164 VDNVKTAAVETLGPVLESHERFPERVNVGFMEVVHREHIRLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + + + VDLPGG L I WK + +YMTGPA V+ G + L
Sbjct: 224 AVAVGIQQASLAEKVRVDLPGGSLHIAWKGPGHPLYMTGPATHVYDGFIHL 274
>gi|401765711|ref|YP_006580718.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400177245|gb|AFP72094.1| diaminopimelate epimerase [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 274
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 164/291 (56%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVNQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTDDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + V C VSMGNPHCV ++
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A + GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA
Sbjct: 164 VDDVETAAVETLGPVLEGHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 224 AVAVGISQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 274
>gi|423451770|ref|ZP_17428623.1| diaminopimelate epimerase [Bacillus cereus BAG5X1-1]
gi|423521189|ref|ZP_17497662.1| diaminopimelate epimerase [Bacillus cereus HuA4-10]
gi|423557498|ref|ZP_17533801.1| diaminopimelate epimerase [Bacillus cereus MC67]
gi|401143974|gb|EJQ51507.1| diaminopimelate epimerase [Bacillus cereus BAG5X1-1]
gi|401179560|gb|EJQ86731.1| diaminopimelate epimerase [Bacillus cereus HuA4-10]
gi|401192904|gb|EJQ99912.1| diaminopimelate epimerase [Bacillus cereus MC67]
Length = 288
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 166/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIREEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E + + GK FT+ T AG++ E+ +D KV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGK-VFTIETLAGIVTAEVTVEDDKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L ++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTREEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAE--RRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G E + TV L GG L I W EE N V M GPAE++ G
Sbjct: 233 AVVAAILNGKMEHDKEITVHLAGGDLMIAWTEEGN-VLMKGPAEIICRG 280
>gi|421899651|ref|ZP_16330014.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
solanacearum MolK2]
gi|206590857|emb|CAQ56469.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
solanacearum MolK2]
Length = 307
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 157/290 (54%), Gaps = 12/290 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
LHF K HG GNDF+++D T TPEQ + DR+FG+GAD ++ D+
Sbjct: 18 LHFTKMHGAGNDFVVLDG-IETPIDFTPEQWRAIADRHFGVGADQLLLVERATRPDVDFR 76
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L K++ V G+ +Q DG+V VDM
Sbjct: 77 YRIFNHDGGEVEHCGNGARCFVKFVTD-RGLTDKRTIRVEVMHGIATLTMQPDGQVTVDM 135
Query: 198 GEPILKASD---VPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ +A+ VP L + + L V+ ++ VSMGNPH V
Sbjct: 136 GAPVFEAARLPFVPDGLPTRVEGRDAQHALQVNDRTAWLSTVSMGNPHAVQVVDD----- 190
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ + E GP E H+VFP R N F+EI+ +++RV+ERGAG TLACGTGACA V
Sbjct: 191 -AEAFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAV 249
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VA + G + V GG L I W E V MTGPA VF G++ L+
Sbjct: 250 VAGIRRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDLD 299
>gi|239813906|ref|YP_002942816.1| diaminopimelate epimerase [Variovorax paradoxus S110]
gi|259595065|sp|C5CND4.1|DAPF_VARPS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|239800483|gb|ACS17550.1| diaminopimelate epimerase [Variovorax paradoxus S110]
Length = 294
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/294 (41%), Positives = 156/294 (53%), Gaps = 19/294 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP----GVNGT 134
+ F K G GNDF+++D T +T Q L DR+FG+GAD ++ P G
Sbjct: 3 IRFTKMQGAGNDFVVLDETRGTLG-LTAAQYRFLADRHFGVGADQILTVRPPSKGAAEGV 61
Query: 135 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVK 194
D+ I N+DG E E CGNG RCF RF+ E +L K + V T AG+I P + DG+V
Sbjct: 62 DFQYVIHNADGGEVEQCGNGARCFMRFVRE-HHLTDKDTVRVETLAGIIEPRMGADGRVT 120
Query: 195 VDMGEPILKASDVPTSLSANKDQSV-------VKSELDVDGVKWNVTCVSMGNPHCVTFG 247
VDMG PI + + VP + Q + D +V +SMGNPH V
Sbjct: 121 VDMGPPIFEPARVPFDTAGLDPQPTGSWHTWHLALGTHADSAIVSVAVLSMGNPHAVQVV 180
Query: 248 TKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACG 307
VD +A GP EHH F R N F++++ S +K+RV+ERGAG TLACG
Sbjct: 181 DN------VDTAPVARQGPLIEHHPRFAQRVNAGFMQVVDRSHIKLRVFERGAGETLACG 234
Query: 308 TGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
TGACA VVA + G ERR V GG L I W+ E + V MTGPA VF G +
Sbjct: 235 TGACAAVVAGIRLGLLERRVDVQTHGGVLTIGWEGEGHPVLMTGPATTVFEGDI 288
>gi|398912949|ref|ZP_10656217.1| diaminopimelate epimerase [Pseudomonas sp. GM49]
gi|398930335|ref|ZP_10664484.1| diaminopimelate epimerase [Pseudomonas sp. GM48]
gi|398165315|gb|EJM53433.1| diaminopimelate epimerase [Pseudomonas sp. GM48]
gi|398181560|gb|EJM69118.1| diaminopimelate epimerase [Pseudomonas sp. GM49]
Length = 276
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 127/290 (43%), Positives = 171/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ G+G D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGVGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T +G+I +I++DG++ V+
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKSGIIELDIRNDGQISVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P + + ++DVDG + VSMGNPH V ++V
Sbjct: 120 MGAPRLVPADIPFQAT----EQAKSYQVDVDGTPVELAAVSMGNPHAV---------VRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I S+ ++RVWERG G T ACGTGACA
Sbjct: 167 SDINNAPVHELGPKIEHHPRFPARVNVGFLQVIDRSRAQLRVWERGTGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276
>gi|311281512|ref|YP_003943743.1| diaminopimelate epimerase [Enterobacter cloacae SCF1]
gi|308750707|gb|ADO50459.1| diaminopimelate epimerase [Enterobacter cloacae SCF1]
Length = 274
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 161/288 (55%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIHVSTANGRMVLSVTDDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + V C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSQVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKRDHIRLRVFERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK ++MTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 274
>gi|398837690|ref|ZP_10594982.1| diaminopimelate epimerase [Pseudomonas sp. GM102]
gi|398118705|gb|EJM08435.1| diaminopimelate epimerase [Pseudomonas sp. GM102]
Length = 276
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 169/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKLWGDRHTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T +G+I +I++DG++ V+
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKRLIRVETKSGIIELDIRNDGQISVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L VP + + ++DVDG + VSMGNPH V L+V
Sbjct: 120 MGAPRL----VPAEIPFQAPNQALSYQVDVDGTTVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I S+ ++RVWERGAG T ACGTGACA
Sbjct: 167 SDINNAPVHELGPKIEHHPRFPARVNVGFLQVIDRSRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276
>gi|351730474|ref|ZP_08948165.1| diaminopimelate epimerase [Acidovorax radicis N35]
Length = 293
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/294 (40%), Positives = 164/294 (55%), Gaps = 21/294 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI--TPEQAAKLCDRNFGIGADGVIFAMPG-VNGTD 135
+ F K G GNDF+++D T+ R+ + Q L DR+FG+GAD ++ P +G D
Sbjct: 3 IRFTKMQGAGNDFVVLDE---TQGRLGLSTAQYRFLADRHFGVGADQILTVRPSPADGID 59
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ I N+DG E E CGNG RCFARF+ + + L+GK + V T +G+I P + DG+V V
Sbjct: 60 FEYVIHNADGGEVEQCGNGARCFARFVHD-KGLSGKDTLRVQTKSGVIAPRLTPDGRVTV 118
Query: 196 DMGEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTC----VSMGNPHCVTFGT 248
DMG P+ + VP + L+A S K L +DG T VSMGNPH V
Sbjct: 119 DMGRPLFEPVQVPFDASGLTAVAQGSGQKWPLALDGKALTATVLVAVVSMGNPHAVQLVD 178
Query: 249 KEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
VD + E GP E H+ FP R N F++I+ + +++RV+ERG G TLACG+
Sbjct: 179 N------VDTAPVLEAGPLVERHARFPQRVNAGFLQIVDRTHVRLRVFERGVGETLACGS 232
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEED-NHVYMTGPAEVVFYGSV 361
GACA V A + G ++ VD GG L I W + V+MTGPA VF G +
Sbjct: 233 GACAAVAAGIRLGLLDKEVHVDTRGGRLTIAWSGAGTDSVFMTGPATTVFEGQI 286
>gi|422651139|ref|ZP_16713937.1| diaminopimelate epimerase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330964220|gb|EGH64480.1| diaminopimelate epimerase [Pseudomonas syringae pv. actinidiae str.
M302091]
Length = 276
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I +I+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKGGIIELDIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L ++P +A + +S LDVDG + VSMGNPH V L+V
Sbjct: 120 MGPPRLVPEEIPFQ-AAEQAKSY---SLDVDGQTVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N + +GPK EHH FPAR N F+ ++ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINNVPVHTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276
>gi|365859171|ref|ZP_09399045.1| diaminopimelate epimerase [Acetobacteraceae bacterium AT-5844]
gi|363712881|gb|EHL96548.1| diaminopimelate epimerase [Acetobacteraceae bacterium AT-5844]
Length = 291
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/293 (39%), Positives = 156/293 (53%), Gaps = 18/293 (6%)
Query: 71 LDRRESGFLHFVKYHGLGNDFILVDNRNS---TEPRITPEQAAKLCDRNFGIGADGVIFA 127
+ R +G + F K HGLGNDF++VD R ITP +AA + DR GIG D I
Sbjct: 1 MRRIWAGMIPFRKMHGLGNDFVVVDGRAPGALDAMAITPARAAAVADRYRGIGCDQFIVL 60
Query: 128 MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI 187
P G D MRI+N DGS+ E CGN RC A L G+ + T GL+ E
Sbjct: 61 EPAGEGADVFMRIWNPDGSQAEACGNATRCVASL---LMAETGRDKVVIQTVRGLLPSER 117
Query: 188 QDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFG 247
+DG ++VDMG D+P + K+ + V + N SMGNPH VTF
Sbjct: 118 LEDGDIRVDMGPATFGWQDIPLA----KEADTAHLPMTVGALS-NPAACSMGNPH-VTFF 171
Query: 248 TKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACG 307
+ +D L+ +GP+ EHH++ PAR N F +++ +++ +WERGAG TLACG
Sbjct: 172 VGD-----LDALDWKALGPQAEHHALLPARANIGFAQVVDTDHIRVGIWERGAGPTLACG 226
Query: 308 TGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
+GACA +V A G R+ VDLPGG L +EW+ D HV M GP F G
Sbjct: 227 SGACATLVNAHRRGLTGRKARVDLPGGTLLLEWR-LDGHVLMAGPVATAFLGQ 278
>gi|212694865|ref|ZP_03302993.1| hypothetical protein BACDOR_04399 [Bacteroides dorei DSM 17855]
gi|212662618|gb|EEB23192.1| diaminopimelate epimerase [Bacteroides dorei DSM 17855]
Length = 280
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/294 (40%), Positives = 160/294 (54%), Gaps = 31/294 (10%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAA-KLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K G GND+I V+ P P + + K + GIG+DG++ D++
Sbjct: 5 IKFTKMQGAGNDYIYVNTLR--HPIADPVRTSIKWSSCHTGIGSDGLVLIGKSTKA-DFS 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAE----------LENLNGKQSFTVHTGAGLIVPEI 187
MRIFN+DGSE MCGN RC +++ + LE L+G + +HT GL+
Sbjct: 62 MRIFNADGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENGLV---- 117
Query: 188 QDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFG 247
+V VDM P+L S + D ++ + VDG ++ T V MGNPH V F
Sbjct: 118 ---EEVTVDMDLPLLTNSRQINT----PDGKMLAKTITVDGKEYKGTFVCMGNPHLVIFI 170
Query: 248 TKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACG 307
+ +NL IGPK E+H +FP RTN EFVE++ L+MRVWERG+G T+ACG
Sbjct: 171 DD------IKNVNLPAIGPKLENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACG 224
Query: 308 TGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
TGACA VAA L A R+ V + GG L + W E D HVYMTGPA VF G +
Sbjct: 225 TGACATAVAAYLNHKAGRKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEI 278
>gi|423527224|ref|ZP_17503669.1| diaminopimelate epimerase [Bacillus cereus HuB1-1]
gi|402454387|gb|EJV86180.1| diaminopimelate epimerase [Bacillus cereus HuB1-1]
Length = 288
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/289 (43%), Positives = 164/289 (56%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L + FT+ T AG++ E+ +DGKV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFTIETLAGIVTAEVTVEDGKVIL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L ++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTREEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVED--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE N V M GPAE + G
Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEAICRG 280
>gi|73539904|ref|YP_294424.1| diaminopimelate epimerase [Ralstonia eutropha JMP134]
gi|123626043|sp|Q476V3.1|DAPF_RALEJ RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|72117317|gb|AAZ59580.1| diaminopimelate epimerase [Ralstonia eutropha JMP134]
Length = 288
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 161/289 (55%), Gaps = 12/289 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADG-VIFAMPGVNGTDYT 137
L F K HG GNDF+++D + + +T EQ L R+FG+GAD +I P D+
Sbjct: 3 LQFTKMHGAGNDFVVLDGIHQ-KLDLTTEQWRALASRHFGVGADQMLIVEKPTREDVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE E CGNG RCF RF+ + + + K+S V G+I +QDDG+V VDM
Sbjct: 62 YRIFNADGSEVEHCGNGARCFVRFVTD-KGMTDKRSVRVEVMNGVITLTLQDDGQVTVDM 120
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P L+ + VP L + L+++G ++ VSMGNPH V
Sbjct: 121 GAPELEPARVPFRPDGLPVRTQGEDIAYGLEINGRTAWISPVSMGNPHAVQVVDD----- 175
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V+ + + GP EHH+ FP R N F++++ ++RV+ERGAG TLACGTGACA V
Sbjct: 176 -VENFPVLQDGPLIEHHATFPNRVNAGFLQVVDRHTARLRVFERGAGETLACGTGACAAV 234
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA + G + V GG L+I W V MTGPA VF G++ L
Sbjct: 235 VAGIRRGLLDSPVKVHTHGGDLNIAWDGGAEPVRMTGPATTVFEGTIDL 283
>gi|423634189|ref|ZP_17609842.1| diaminopimelate epimerase [Bacillus cereus VD156]
gi|401281550|gb|EJR87458.1| diaminopimelate epimerase [Bacillus cereus VD156]
Length = 288
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 167/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I+ E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQISEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L + FT+ T AG++ E+ ++GKV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFTIETLAGIVTAEVTVEEGKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + ++ + ++ T VSMGNPH + F
Sbjct: 121 AKIDMGAPRLTRAEIP--MLGEDETPFIRENFLYNNHRYAFTAVSMGNPHAIIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE + V M GPAEV+ G
Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGS-VLMKGPAEVICRG 280
>gi|425302711|ref|ZP_18692589.1| diaminopimelate epimerase [Escherichia coli 07798]
gi|432468145|ref|ZP_19710221.1| diaminopimelate epimerase [Escherichia coli KTE205]
gi|432585337|ref|ZP_19821727.1| diaminopimelate epimerase [Escherichia coli KTE57]
gi|433075090|ref|ZP_20261725.1| diaminopimelate epimerase [Escherichia coli KTE129]
gi|433122427|ref|ZP_20308080.1| diaminopimelate epimerase [Escherichia coli KTE157]
gi|433185549|ref|ZP_20369782.1| diaminopimelate epimerase [Escherichia coli KTE85]
gi|408210370|gb|EKI34935.1| diaminopimelate epimerase [Escherichia coli 07798]
gi|430990503|gb|ELD06933.1| diaminopimelate epimerase [Escherichia coli KTE205]
gi|431114323|gb|ELE17867.1| diaminopimelate epimerase [Escherichia coli KTE57]
gi|431582793|gb|ELI54804.1| diaminopimelate epimerase [Escherichia coli KTE129]
gi|431638394|gb|ELJ06429.1| diaminopimelate epimerase [Escherichia coli KTE157]
gi|431701777|gb|ELJ66690.1| diaminopimelate epimerase [Escherichia coli KTE85]
Length = 274
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +P+ +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|423286225|ref|ZP_17265076.1| diaminopimelate epimerase [Bacteroides ovatus CL02T12C04]
gi|392674912|gb|EIY68354.1| diaminopimelate epimerase [Bacteroides ovatus CL02T12C04]
Length = 269
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 165/295 (55%), Gaps = 46/295 (15%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITP-EQAAKLCDRNFGIGADGVIFAMPGV-NGTDY 136
+ F K HG GND+I VD S P P ++A + + GIG+DG+I + GV + D+
Sbjct: 5 IKFAKMHGAGNDYIYVDT--SQYPIADPAKKAIEWSKFHTGIGSDGLI--LIGVSDKADF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
+MRIFN+DGSE MCGNG RC +++ E L K T+ T +G+ + ++ +GK
Sbjct: 61 SMRIFNADGSEAMMCGNGSRCVGKYVYEY-GLTDKTEITLDTRSGIKILKLHVEGKTVSA 119
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWN------VTCVSMGNPHCVTF 246
V VDMG P L+ + ++W T VSMGNPH VTF
Sbjct: 120 VTVDMGSP-----------------------LETEEIQWGGKYPFRSTKVSMGNPHLVTF 156
Query: 247 GTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLAC 306
+ ++NL EIGP+ E+H +FP RTN EF +I+S ++MRVWERG+G T AC
Sbjct: 157 VED------ITQINLPEIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQAC 210
Query: 307 GTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
GTGACA VAA + G R+ V + GG + IEW E H+ MTGPA VF G +
Sbjct: 211 GTGACATAVAAFINGLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEI 265
>gi|83745969|ref|ZP_00943025.1| Diaminopimelate epimerase [Ralstonia solanacearum UW551]
gi|207742011|ref|YP_002258403.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
solanacearum IPO1609]
gi|83727363|gb|EAP74485.1| Diaminopimelate epimerase [Ralstonia solanacearum UW551]
gi|206593397|emb|CAQ60324.1| diaminopimelate epimerase (dap epimerase) protein [Ralstonia
solanacearum IPO1609]
Length = 307
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 157/290 (54%), Gaps = 12/290 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
LHF K HG GNDF+++D T TPEQ + DR+FG+GAD ++ D+
Sbjct: 18 LHFTKMHGAGNDFVVLDG-IETPIDFTPEQWRAIADRHFGVGADQLLLVERSTRPDVDFR 76
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L K++ V G+ +Q DG+V VDM
Sbjct: 77 YRIFNHDGGEVEHCGNGARCFVKFVTD-RGLTDKRTIRVEVMHGIATLTMQPDGQVTVDM 135
Query: 198 GEPILKASD---VPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ +A+ VP L + + L V+ ++ VSMGNPH V
Sbjct: 136 GAPVFEAARLPFVPDGLPTRVEGRDAQHALQVNDRTAWLSTVSMGNPHAVQVVDD----- 190
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ + E GP E H+VFP R N F+EI+ +++RV+ERGAG TLACGTGACA V
Sbjct: 191 -TEAFPVLEDGPLIESHAVFPRRVNAGFMEIVDRHAIRLRVYERGAGETLACGTGACAAV 249
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VA + G + V GG L I W E V MTGPA VF G++ L+
Sbjct: 250 VAGIRRGLLDSPVKVATHGGGLTIAWAGEGEPVMMTGPATTVFEGTLDLD 299
>gi|339324370|ref|YP_004684063.1| diaminopimelate epimerase DapF [Cupriavidus necator N-1]
gi|338164527|gb|AEI75582.1| diaminopimelate epimerase DapF [Cupriavidus necator N-1]
Length = 288
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 160/289 (55%), Gaps = 12/289 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
L F K HG GNDF+++D + + +TP Q L R+FG+GAD + I P D+
Sbjct: 3 LQFTKMHGAGNDFVVLDGIHQ-QIDLTPAQWRALASRHFGVGADQILIVEKPSRPDVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI N+DGSE E CGNG RCF RF+ + + + K+S V G+I +QDDG+V VDM
Sbjct: 62 YRIVNADGSEVEHCGNGARCFVRFVTD-KGMTDKRSVRVEVMNGVITLTLQDDGQVTVDM 120
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P L+ + VP L + + L+V+G ++ VSMGNPH V
Sbjct: 121 GAPELEPARVPFRAEGLPTRAEGADTLYGLEVNGRTEWISAVSMGNPHAVQVVDN----- 175
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V+ + + GP EHH+ FP R N F+++ +++RV+ERGAG TLACGTGACA V
Sbjct: 176 -VENFPVLQDGPVVEHHAAFPNRVNAGFMQVQDRHTIRLRVYERGAGETLACGTGACAAV 234
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA + G + V GG L I W V MTGPA VF GS+ L
Sbjct: 235 VAGIRRGLLDSPVRVHTHGGELTIAWDGGAEPVRMTGPATTVFEGSIDL 283
>gi|409401335|ref|ZP_11251147.1| diaminopimelate epimerase [Acidocella sp. MX-AZ02]
gi|409129893|gb|EKM99708.1| diaminopimelate epimerase [Acidocella sp. MX-AZ02]
Length = 272
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/284 (42%), Positives = 159/284 (55%), Gaps = 16/284 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
L F+K HG GNDF+++D R T+P + PE K+ DR G+G D +I P G D
Sbjct: 1 MLPFIKMHGAGNDFVVLDGR-VTKPALAPEAIRKIADRRRGVGCDQLIIIEPDGAGADAF 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
MRI NSDGSE CGN RC A +AE +G + ++ T GL+ EI G V+VDM
Sbjct: 60 MRILNSDGSESGACGNATRCVAALLAEE---SGARHVSIRTAGGLLQAEILGPGLVEVDM 116
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L+ DVP + A+ + L + V C SMGNPH TF ++ +L ++
Sbjct: 117 GPPHLEWGDVPLAAPAD----TLHLPLALGPVADPAAC-SMGNPH-ATFFIEDFAHLPIE 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
IGP E + +FP R N F I SPS++++RVWERGAG TLACG+GACA +V A
Sbjct: 171 T-----IGPMLEKNRIFPERANIGFARIESPSRIRLRVWERGAGLTLACGSGACATLVNA 225
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
G R+ V++ GG L I W + HV M GPA F G +
Sbjct: 226 HRRGLTGRQAVVEMDGGELLITWTQA-GHVLMRGPAVTAFAGEI 268
>gi|260596033|ref|YP_003208604.1| diaminopimelate epimerase [Cronobacter turicensis z3032]
gi|260215210|emb|CBA27065.1| Diaminopimelate epimerase [Cronobacter turicensis z3032]
Length = 274
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 166/291 (57%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPEMIRRLADRHQGVGFDQLLVVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKREIRVSTANGRMVLTVNEDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP+ + S VP + + ++++ + V C VSMGNPHCV ++
Sbjct: 119 GEPVFEPSLVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A + GP E H FP R N F++I++ +++RV+ERGAG T ACG+GAC
Sbjct: 164 VDDVATAPVETLGPLMESHERFPERANIGFMQIMNTEHIRLRVFERGAGETQACGSGACG 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G + VDLPGG LDI WK N ++MTGPA V+ G + L
Sbjct: 224 AVAVGIQQGLLAAQVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDGFIHL 274
>gi|161505545|ref|YP_001572657.1| diaminopimelate epimerase [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|160866892|gb|ABX23515.1| hypothetical protein SARI_03710 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 275
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 162/289 (56%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MMQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G IV + +D V+V+
Sbjct: 60 HYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTTNGRIVLSVTEDELVRVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP + + VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 MGEPNFEPAQVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVD 166
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 NVDTAAVDTLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAV 226
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 AVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 275
>gi|75758928|ref|ZP_00739039.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218900087|ref|YP_002448498.1| diaminopimelate epimerase [Bacillus cereus G9842]
gi|228968042|ref|ZP_04129049.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|402563558|ref|YP_006606282.1| diaminopimelate epimerase [Bacillus thuringiensis HD-771]
gi|423566176|ref|ZP_17542451.1| diaminopimelate epimerase [Bacillus cereus MSX-A1]
gi|434378086|ref|YP_006612730.1| diaminopimelate epimerase [Bacillus thuringiensis HD-789]
gi|226724203|sp|B7IMV5.1|DAPF_BACC2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|74493602|gb|EAO56707.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218543171|gb|ACK95565.1| diaminopimelate epimerase [Bacillus cereus G9842]
gi|228791665|gb|EEM39260.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|401192490|gb|EJQ99505.1| diaminopimelate epimerase [Bacillus cereus MSX-A1]
gi|401792210|gb|AFQ18249.1| diaminopimelate epimerase [Bacillus thuringiensis HD-771]
gi|401876643|gb|AFQ28810.1| diaminopimelate epimerase [Bacillus thuringiensis HD-789]
Length = 288
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 167/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLVLVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L + FT+ T AG++ E+ ++GKV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFTIETLAGIVTAEVTVEEGKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTRAEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V++ L +GP E H +FP R N EF+EI++ +++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEQAPLTTLGPVLETHEMFPERVNVEFIEILNDAEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE N V M GPAEV+ G
Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
>gi|350563569|ref|ZP_08932390.1| diaminopimelate epimerase [Thioalkalimicrobium aerophilum AL3]
gi|349778704|gb|EGZ33055.1| diaminopimelate epimerase [Thioalkalimicrobium aerophilum AL3]
Length = 286
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/281 (40%), Positives = 156/281 (55%), Gaps = 13/281 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
+ F K HGLGNDF++VD N + +P L +R++G+G D + + P D+
Sbjct: 3 IKFSKMHGLGNDFMVVDAINQS-IEFSPGLVKALANRHWGVGFDQLLVVEKPQSTQADFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE + CGNG RCFARF+ + + L K+ V T +GLIV ++ DG+V+V+M
Sbjct: 62 YRIFNADGSEVQQCGNGARCFARFVYD-QGLTQKREIPVETASGLIVLYLEADGQVRVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P + P +L +Q ++DVD W + VSMGNPH V + V+
Sbjct: 121 GVPRFE----PNALPFEAEQQAPTYQIDVDHQAWLIGAVSMGNPHAVLMPFENVAQAPVE 176
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
L G E H FP R N F ++I +K+RV+ERGAG T ACGTGACA +
Sbjct: 177 SL-----GAALESHPRFPERVNVGFPQLIDAEYIKLRVFERGAGETQACGTGACAAMAVL 231
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEE-DNHVYMTGPAEVVF 357
L G + TV LPGG L I W + D ++MTGP VF
Sbjct: 232 RLWGKVSEQVTVSLPGGDLQIRWSGKLDEPLWMTGPVATVF 272
>gi|350560006|ref|ZP_08928846.1| diaminopimelate epimerase [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349782274|gb|EGZ36557.1| diaminopimelate epimerase [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 278
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/290 (42%), Positives = 157/290 (54%), Gaps = 23/290 (7%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTD-- 135
L F K HGLGNDF+++D R + + PE L DR+FGIG D V+ V+ +
Sbjct: 3 LAFTKMHGLGNDFVVIDGVRQQVD--LDPEAIRFLADRHFGIGCDQVLLVERPVDPSRAL 60
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ RIFN+DG E E CGNG RCFA F+ E + L + V T AG I +++ DG+V V
Sbjct: 61 FRYRIFNADGGEVEQCGNGARCFAVFVRE-QGLTQADTIPVETLAGPIELQVEPDGQVTV 119
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
+MG P +P D+ L+V G + VSMGNPH V L
Sbjct: 120 NMGRPRFHPDQLPFLAPIEADEY----PLEVAGESLRIGAVSMGNPHAV---------LL 166
Query: 256 VDKLNLAEIG---PKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A++G P E H FP R N F + S + +RVWERGAG TLACGTGACA
Sbjct: 167 VDAVATAQVGRLGPAIERHPRFPDRVNVGFAAVRSRDHIDLRVWERGAGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWK-EEDNHVYMTGPAEVVFYGSV 361
+ A G + R VDLPGG L + W E D V+MTGPA VF+G +
Sbjct: 227 AMAVARRRGLVDDRIRVDLPGGSLVLSWSGESDQPVWMTGPATTVFHGRI 276
>gi|229014125|ref|ZP_04171246.1| Diaminopimelate epimerase [Bacillus mycoides DSM 2048]
gi|229135766|ref|ZP_04264537.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST196]
gi|229169661|ref|ZP_04297362.1| Diaminopimelate epimerase [Bacillus cereus AH621]
gi|423368939|ref|ZP_17346370.1| diaminopimelate epimerase [Bacillus cereus VD142]
gi|423490096|ref|ZP_17466778.1| diaminopimelate epimerase [Bacillus cereus BtB2-4]
gi|423495820|ref|ZP_17472464.1| diaminopimelate epimerase [Bacillus cereus CER057]
gi|423497386|ref|ZP_17474003.1| diaminopimelate epimerase [Bacillus cereus CER074]
gi|423597777|ref|ZP_17573777.1| diaminopimelate epimerase [Bacillus cereus VD078]
gi|423660224|ref|ZP_17635393.1| diaminopimelate epimerase [Bacillus cereus VDM022]
gi|228613804|gb|EEK70928.1| Diaminopimelate epimerase [Bacillus cereus AH621]
gi|228647691|gb|EEL03755.1| Diaminopimelate epimerase [Bacillus cereus BDRD-ST196]
gi|228747079|gb|EEL96961.1| Diaminopimelate epimerase [Bacillus mycoides DSM 2048]
gi|401079053|gb|EJP87357.1| diaminopimelate epimerase [Bacillus cereus VD142]
gi|401149656|gb|EJQ57123.1| diaminopimelate epimerase [Bacillus cereus CER057]
gi|401163106|gb|EJQ70459.1| diaminopimelate epimerase [Bacillus cereus CER074]
gi|401239309|gb|EJR45741.1| diaminopimelate epimerase [Bacillus cereus VD078]
gi|401303885|gb|EJS09446.1| diaminopimelate epimerase [Bacillus cereus VDM022]
gi|402429775|gb|EJV61857.1| diaminopimelate epimerase [Bacillus cereus BtB2-4]
Length = 288
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 166/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIREEDLAIVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E + + GK FT+ T AG++ E+ +D KV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGK-VFTIETLAGIVTAEVTVEDDKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L ++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTREEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAE--RRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G E + TV L GG L I W EE N V M GPAE++ G
Sbjct: 233 AVVAAILNGKMEHGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEIICRG 280
>gi|262196452|ref|YP_003267661.1| diaminopimelate epimerase [Haliangium ochraceum DSM 14365]
gi|262079799|gb|ACY15768.1| diaminopimelate epimerase [Haliangium ochraceum DSM 14365]
Length = 326
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 171/325 (52%), Gaps = 51/325 (15%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-----------TPEQAAKLCDRNFGIGADGVIFA 127
+ F KYHGLGNDF++VD R+ P + +P LC+R FGIGADG++
Sbjct: 1 MRFGKYHGLGNDFLVVDLRD---PEVAAGTGHAGEVPSPAVVRALCERRFGIGADGIMAV 57
Query: 128 MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELE-NLNGKQSFTVHTGAGLIV-- 184
+P + D +R+ NSDGSE EMCGNG+RC +++ E + L G+++ + TGAGL+
Sbjct: 58 LPALGDGDARLRVLNSDGSEAEMCGNGLRCVVKYLGERDPALRGRETLNIETGAGLLRCR 117
Query: 185 -----PEIQDDG-----KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVT 234
+ D G +V VDMG P L+ + +P + ++ + L + G ++T
Sbjct: 118 AHRSDTALGDGGIAAIEQVTVDMGRPRLERAQIP--MHGPAEERCISEPLAIAGRPLDIT 175
Query: 235 CVSMGNPHCVTFGTKEGQNLKVDKLNLAE-IGPKFEHHSVFPARTNTEFVEI-------- 285
VSMGNPH + F G ++ LAE IGP E H FP TN E +
Sbjct: 176 AVSMGNPHAIAFVDVHG----AEQRALAELIGPSLERHPWFPRHTNVELAHLRRAPQSAA 231
Query: 286 -------ISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAE--RRCTVDLPGGPL 336
SP+ +++ VWERG G TLACGTGACA VAA L G A TV L GGPL
Sbjct: 232 DDDGDSADSPTVIELVVWERGCGITLACGTGACATAVAACLTGRARPGEAITVHLLGGPL 291
Query: 337 DIEWKEEDNHVYMTGPAEVVFYGSV 361
I E + V M GPA VF G V
Sbjct: 292 AITVGAELDSVRMRGPATHVFDGVV 316
>gi|407711853|ref|YP_006832418.1| diaminopimelate epimerase [Burkholderia phenoliruptrix BR3459a]
gi|407234037|gb|AFT84236.1| diaminopimelate epimerase [Burkholderia phenoliruptrix BR3459a]
Length = 287
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 162/292 (55%), Gaps = 16/292 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HG GNDF+++D T+P +TP Q L DR+FG+GAD ++ P V+G D+
Sbjct: 3 LKFTKMHGAGNDFVVLDG--YTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVDGVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN DG E E CGNG RCF +F+ + L ++S V G I +Q++G+V VD
Sbjct: 61 RYRIFNCDGGEVEHCGNGARCFVKFVRD-SGLTDQRSVRVQVQKGTITLTMQENGEVLVD 119
Query: 197 MGEPILKASDVPTS---LSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
MG P+ + VP + L ++ + LDV+G ++ VSMGNPH V
Sbjct: 120 MGSPVFEPERVPFATKGLEGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVVDD---- 175
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V+ + GP E H+ FP R N F++I+ S++++RV+ERGAG TLACGTGACA
Sbjct: 176 --VEAFPVLVEGPVIERHARFPQRVNAGFMQIVGRSEIRLRVYERGAGETLACGTGACAA 233
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEW--KEEDNHVYMTGPAEVVFYGSVLL 363
V A + G + V GG L I W + + M GPA VF G + L
Sbjct: 234 VAAGIRRGLLDAPVLVHTHGGTLTISWDSNKASEPLLMAGPATTVFQGEIEL 285
>gi|398900654|ref|ZP_10649641.1| diaminopimelate epimerase [Pseudomonas sp. GM50]
gi|398180483|gb|EJM68061.1| diaminopimelate epimerase [Pseudomonas sp. GM50]
Length = 276
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 169/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKLWGDRHTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T +G+I +I++DG++ V+
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKRLIRVETKSGIIELDIRNDGQISVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L VP + + ++DVDG + VSMGNPH V L+V
Sbjct: 120 MGAPRL----VPAEIPFEAPSQALSYQVDVDGTTVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I S+ ++RVWERGAG T ACGTGACA
Sbjct: 167 SDINNAPVHELGPKIEHHPRFPARVNVGFLQVIDRSRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276
>gi|48428755|gb|AAT42404.1| diaminopimelate epimerase [Collimonas fungivorans Ter331]
Length = 280
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/282 (41%), Positives = 161/282 (57%), Gaps = 14/282 (4%)
Query: 85 HGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPG-VNGTDYTMRIFNS 143
HG GNDF+++D + TP Q +L DR FG+GAD ++ G D+ RI+N+
Sbjct: 2 HGAGNDFVVIDAIHQ-HVDFTPAQWQRLGDRRFGVGADQMLVVEKSQAEGVDFRYRIYNA 60
Query: 144 DGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILK 203
DG E E CGNG R F +F+ + + L K++ V T +G+I P+++DDG++ V MG P+L
Sbjct: 61 DGGEVEQCGNGARAFVKFVTD-KGLTSKRAIRVETMSGIIEPKLEDDGRITVAMGAPVLA 119
Query: 204 ASDVPTSLSANKDQSVVKSE----LDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
+ VP S N D + + LDV G + ++ VSMGNPH V ++ + V
Sbjct: 120 PAAVPFDAS-NLDSRAMGEDTLWPLDVQGKQVWISVVSMGNPHAVQV-VEDSEAAPV--- 174
Query: 260 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVL 319
LAE GP EHH FP R N F++I+ +K+RV+ERGAG TLACGTGACA VVA +
Sbjct: 175 -LAE-GPLIEHHPRFPRRVNAGFMQIVDRHSIKLRVFERGAGETLACGTGACAAVVAGIR 232
Query: 320 EGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
G + V GG L I W V MTGPA VF G +
Sbjct: 233 RGLLDSPVAVQTHGGELSIAWAGGQQAVMMTGPAVSVFEGEI 274
>gi|213970727|ref|ZP_03398852.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1]
gi|301382615|ref|ZP_07231033.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato Max13]
gi|302133634|ref|ZP_07259624.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato NCPPB
1108]
gi|213924561|gb|EEB58131.1| diaminopimelate epimerase [Pseudomonas syringae pv. tomato T1]
Length = 276
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/290 (45%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I EI+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKGGIIELEIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L ++P +A + +S LDVDG + VSMGNPH V L+V
Sbjct: 120 MGPPRLVPEEIPFQ-AAEQAKSY---SLDVDGQTVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A + GPK EH+ FPAR N F+ ++ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINNAPVHTLGPKIEHNPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276
>gi|152972797|ref|YP_001337943.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|150957646|gb|ABR79676.1| diaminopimelate epimerase [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
Length = 275
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 162/289 (56%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MMQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGS+ CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+
Sbjct: 60 HYRIFNADGSDVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP + S VP + + ++++ + V C VSMGNPHCV Q
Sbjct: 119 MGEPNFEPSQVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCVI------QVD 166
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
VD + +GP E H FP R N F++++ S +++RV+ERGAG T ACG+GACA V
Sbjct: 167 DVDTAAVETLGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGACAAV 226
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK ++MTGPA V+ G + L
Sbjct: 227 AVGIQQGLLAETVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 275
>gi|398862193|ref|ZP_10617805.1| diaminopimelate epimerase [Pseudomonas sp. GM79]
gi|398231163|gb|EJN17159.1| diaminopimelate epimerase [Pseudomonas sp. GM79]
Length = 276
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 169/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKLWGDRHTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T +G+I +I++DG++ V+
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKRLIRVETKSGIIELDIRNDGQISVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L VP + + ++DVDG + VSMGNPH V L+V
Sbjct: 120 MGAPRL----VPAEIPFEAPNQALSYQVDVDGTTVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I S+ ++RVWERGAG T ACGTGACA
Sbjct: 167 SDINNAPVHELGPKIEHHPRFPARVNVGFLQVIDRSRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276
>gi|66043453|ref|YP_233294.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae B728a]
gi|422672764|ref|ZP_16732127.1| diaminopimelate epimerase [Pseudomonas syringae pv. aceris str.
M302273]
gi|75503931|sp|Q500B6.1|DAPF_PSEU2 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|63254160|gb|AAY35256.1| diaminopimelate epimerase [Pseudomonas syringae pv. syringae B728a]
gi|330970501|gb|EGH70567.1| diaminopimelate epimerase [Pseudomonas syringae pv. aceris str.
M302273]
Length = 276
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 168/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKSGIIELDIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P VP + + +DVDG ++ VSMGNPH V L+V
Sbjct: 120 MGPPRF----VPEEIPFEAAEQATCYTVDVDGQHVDMAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A E+GPK EHH FPAR N F+ ++ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINNAPVHELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276
>gi|422591144|ref|ZP_16665792.1| diaminopimelate epimerase [Pseudomonas syringae pv. morsprunorum
str. M302280]
gi|330878500|gb|EGH12649.1| diaminopimelate epimerase [Pseudomonas syringae pv. morsprunorum
str. M302280]
Length = 276
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 165/290 (56%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I +I+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKGGIIELDIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L VP + + LD DG + VSMGNPH V L+V
Sbjct: 120 MGPPRL----VPEEIPFQAAEQAKSYSLDADGQTVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A + GPK EHH FPAR N F+ ++ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINNAPVHTLGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHPVMMTGPATRVYEGQVRL 276
>gi|416900376|ref|ZP_11929651.1| diaminopimelate epimerase [Escherichia coli STEC_7v]
gi|417117468|ref|ZP_11968329.1| diaminopimelate epimerase [Escherichia coli 1.2741]
gi|327250659|gb|EGE62365.1| diaminopimelate epimerase [Escherichia coli STEC_7v]
gi|386140012|gb|EIG81167.1| diaminopimelate epimerase [Escherichia coli 1.2741]
Length = 274
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 161/288 (55%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVCVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|89074450|ref|ZP_01160927.1| diaminopimelate epimerase [Photobacterium sp. SKA34]
gi|89049738|gb|EAR55288.1| diaminopimelate epimerase [Photobacterium sp. SKA34]
Length = 276
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/287 (39%), Positives = 166/287 (57%), Gaps = 17/287 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
++F K HGLGNDF++VD + +P+ +L DR+ GIG D ++ P + TD+
Sbjct: 3 INFSKMHGLGNDFVVVDCV-TQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE E CGNG RCFARF++ ++ L K +V T AG ++ ++++D +V V+M
Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVS-MKGLTNKYHISVSTKAGKMLLKLENDNQVTVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
G PI + S +P + ++++ + + C SMGNPHCVT
Sbjct: 121 GGPIFEPSKIPMKAKQAEKTYILRAG------EQTLFCGAASMGNPHCVTVVDN------ 168
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD ++ +GP E H FP R N F+++I + +++RV+ERGAG TLACG+GACA V
Sbjct: 169 VDTADVDTLGPLLESHERFPERVNAGFMQVIDRNNVRLRVYERGAGETLACGSGACAAVA 228
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
+G + V LPGG L I W E ++MTGPA VF G +
Sbjct: 229 IGRSQGLLDENVKVSLPGGDLYIRWAGEGKPLFMTGPAAHVFDGQFI 275
>gi|50123103|ref|YP_052270.1| diaminopimelate epimerase [Pectobacterium atrosepticum SCRI1043]
gi|81643660|sp|Q6CZG8.1|DAPF_ERWCT RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|49613629|emb|CAG77080.1| diaminopimelate epimerase [Pectobacterium atrosepticum SCRI1043]
Length = 274
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFAKMHGLGNDFMVVDA-VTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + VP + +++++ + V C VSMGNPHCV Q
Sbjct: 119 GEPNFEPQQVPFRAVKAEKTYIMRAD------EHTVLCGVVSMGNPHCVI------QVED 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
V+ + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VETAKVETLGPLLESHERFPDRANIGFMQVVDSQTVRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+L+G + V LPGG LDI+W + ++MTGPA V+ G + L
Sbjct: 227 VGILQGLLSAKVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDGFIHL 274
>gi|149200003|ref|ZP_01877029.1| diaminopimelate epimerase [Lentisphaera araneosa HTCC2155]
gi|149136876|gb|EDM25303.1| diaminopimelate epimerase [Lentisphaera araneosa HTCC2155]
Length = 278
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/278 (41%), Positives = 155/278 (55%), Gaps = 12/278 (4%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADG-VIFAMPGVNGTDYTMR 139
F K HG GNDFI+V+ T P A +C R F +GAD +I ++ M
Sbjct: 6 FTKMHGCGNDFIVVNTFRETVPEDLSALAQDMCQRRFAVGADQFIILGSAESADANFRMD 65
Query: 140 IFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
I N+DGS+ EMCGN +RC A + A+ E L + T G+ I +DG V++ +
Sbjct: 66 ILNADGSKVEMCGNALRCAAVY-AKREGLIQSDELKIETMTGISFATILEDGNVRIAVAV 124
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P DV + + + + L + + +T VS+GNPH VT+ + +D L
Sbjct: 125 PSTTIVDV----GLDSEHPLFGTPLSAEQYTFPMTAVSVGNPHAVTYVDE------IDLL 174
Query: 260 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVL 319
NL +IGP FEHH VF R N EFV++I ++MRVWERG+G TLACG+GACAV VA+VL
Sbjct: 175 NLEKIGPLFEHHEVFKNRANIEFVKVIDDHHVEMRVWERGSGETLACGSGACAVAVASVL 234
Query: 320 EGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVF 357
G A+ V L GG L+IEW+ VYM+G A VF
Sbjct: 235 HGVAKSPMKVSLKGGDLEIEWEGRGKPVYMSGSASFVF 272
>gi|422803402|ref|ZP_16851890.1| diaminopimelate epimerase [Escherichia coli M863]
gi|323964054|gb|EGB59544.1| diaminopimelate epimerase [Escherichia coli M863]
Length = 275
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 161/289 (55%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 1 MMQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGIGFDQLLVVEPPYDPELDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V V+
Sbjct: 60 HYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVCVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 MGEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVD 166
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 DVDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAV 226
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 AVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 275
>gi|16762187|ref|NP_457804.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29143676|ref|NP_807018.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56415801|ref|YP_152876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161353579|ref|NP_462832.2| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|161617066|ref|YP_001591031.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|162139521|ref|YP_218833.2| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|167993885|ref|ZP_02574978.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168233879|ref|ZP_02658937.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168238400|ref|ZP_02663458.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|168244636|ref|ZP_02669568.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168263163|ref|ZP_02685136.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168822683|ref|ZP_02834683.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194443293|ref|YP_002043177.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194449106|ref|YP_002047959.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194471742|ref|ZP_03077726.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194735174|ref|YP_002116876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197249980|ref|YP_002148871.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197262124|ref|ZP_03162198.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197364731|ref|YP_002144368.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198243444|ref|YP_002217876.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200388367|ref|ZP_03214979.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204930238|ref|ZP_03221215.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|213052016|ref|ZP_03344894.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213417519|ref|ZP_03350661.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213425409|ref|ZP_03358159.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|238912950|ref|ZP_04656787.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289829105|ref|ZP_06546779.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|374979444|ref|ZP_09720780.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|375116763|ref|ZP_09761933.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|378452847|ref|YP_005240207.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378961528|ref|YP_005219014.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|378986636|ref|YP_005249792.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|386589313|ref|YP_006085713.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|409247623|ref|YP_006888319.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|416427293|ref|ZP_11693472.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416434879|ref|ZP_11697900.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416436856|ref|ZP_11698524.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416447473|ref|ZP_11705881.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416454719|ref|ZP_11710440.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416457498|ref|ZP_11712213.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416464143|ref|ZP_11716239.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|416475386|ref|ZP_11720609.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416489285|ref|ZP_11726115.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416496563|ref|ZP_11729189.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416507862|ref|ZP_11735688.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416517684|ref|ZP_11739585.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|416529334|ref|ZP_11744301.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416540109|ref|ZP_11750283.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416547096|ref|ZP_11754385.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416548860|ref|ZP_11755074.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|416562008|ref|ZP_11761854.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416572806|ref|ZP_11767470.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|416574864|ref|ZP_11768033.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416587449|ref|ZP_11776059.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416594734|ref|ZP_11780551.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416596075|ref|ZP_11781169.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416606158|ref|ZP_11787553.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416613358|ref|ZP_11791992.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|416624013|ref|ZP_11797757.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416634931|ref|ZP_11802823.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416639337|ref|ZP_11804471.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416649618|ref|ZP_11809990.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|416660781|ref|ZP_11815216.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416668622|ref|ZP_11819009.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416678409|ref|ZP_11822636.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416689493|ref|ZP_11825599.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416704579|ref|ZP_11830333.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416710666|ref|ZP_11834694.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416717796|ref|ZP_11840037.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416723397|ref|ZP_11844109.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416728973|ref|ZP_11847709.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416742421|ref|ZP_11855803.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416748199|ref|ZP_11858590.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416759482|ref|ZP_11864313.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416764219|ref|ZP_11867854.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416772757|ref|ZP_11873456.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|417436973|ref|ZP_12161705.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|418486080|ref|ZP_13055054.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418492948|ref|ZP_13059422.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418496832|ref|ZP_13063261.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418499715|ref|ZP_13066119.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418506066|ref|ZP_13072406.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418507154|ref|ZP_13073479.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418513700|ref|ZP_13079925.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|418526475|ref|ZP_13092451.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|418791443|ref|ZP_13347205.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418791702|ref|ZP_13347456.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418797739|ref|ZP_13353422.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|418807119|ref|ZP_13362685.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418811280|ref|ZP_13366814.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418818517|ref|ZP_13373988.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418821060|ref|ZP_13376486.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|418826254|ref|ZP_13381497.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|418829047|ref|ZP_13384039.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418836044|ref|ZP_13390934.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418842982|ref|ZP_13397788.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418847528|ref|ZP_13402282.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418851585|ref|ZP_13406295.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418855054|ref|ZP_13409716.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|418859155|ref|ZP_13413762.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418862352|ref|ZP_13416894.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|418865900|ref|ZP_13420366.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|419729891|ref|ZP_14256846.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419733440|ref|ZP_14260338.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419739261|ref|ZP_14266011.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419744313|ref|ZP_14270968.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419747557|ref|ZP_14274066.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|421359305|ref|ZP_15809600.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421361227|ref|ZP_15811492.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421369203|ref|ZP_15819386.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421370086|ref|ZP_15820257.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421375152|ref|ZP_15825266.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421381830|ref|ZP_15831884.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421383678|ref|ZP_15833712.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421388243|ref|ZP_15838235.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421395353|ref|ZP_15845290.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421399732|ref|ZP_15849626.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421401725|ref|ZP_15851592.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421408857|ref|ZP_15858655.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421410851|ref|ZP_15860623.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421417912|ref|ZP_15867620.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421420156|ref|ZP_15869835.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421424294|ref|ZP_15873938.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421428810|ref|ZP_15878413.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421436052|ref|ZP_15885586.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421438476|ref|ZP_15887972.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421442482|ref|ZP_15891932.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421447161|ref|ZP_15896564.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|421568565|ref|ZP_16014281.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421573163|ref|ZP_16018804.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421577836|ref|ZP_16023420.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421585428|ref|ZP_16030926.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|421882886|ref|ZP_16314135.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|422028184|ref|ZP_16374500.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422033235|ref|ZP_16379317.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|427556406|ref|ZP_18929823.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427573911|ref|ZP_18934414.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427595446|ref|ZP_18939328.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427620213|ref|ZP_18944210.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427643542|ref|ZP_18949098.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427658202|ref|ZP_18953822.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427663460|ref|ZP_18958724.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427680424|ref|ZP_18963617.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|427801510|ref|ZP_18969066.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|436590129|ref|ZP_20511962.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|436672767|ref|ZP_20517532.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|436801182|ref|ZP_20524775.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|436806460|ref|ZP_20526668.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436813879|ref|ZP_20532060.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436846010|ref|ZP_20539068.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436847869|ref|ZP_20539840.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436859979|ref|ZP_20547800.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436867030|ref|ZP_20552430.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436868657|ref|ZP_20553316.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436876233|ref|ZP_20557714.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436890168|ref|ZP_20565754.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436898421|ref|ZP_20570419.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436901975|ref|ZP_20572858.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436908540|ref|ZP_20575769.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436917072|ref|ZP_20580660.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436922699|ref|ZP_20584705.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436937828|ref|ZP_20592931.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436940086|ref|ZP_20594123.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436948414|ref|ZP_20598649.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436958497|ref|ZP_20603172.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436967325|ref|ZP_20607268.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436976269|ref|ZP_20611754.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|437000094|ref|ZP_20620566.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437008867|ref|ZP_20623602.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437014205|ref|ZP_20625406.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437026425|ref|ZP_20629788.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437037347|ref|ZP_20634203.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437053414|ref|ZP_20642495.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437061342|ref|ZP_20646896.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437063055|ref|ZP_20647784.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437071951|ref|ZP_20652206.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437083512|ref|ZP_20659186.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437092202|ref|ZP_20663728.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437098955|ref|ZP_20665642.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437119094|ref|ZP_20670715.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437131528|ref|ZP_20677431.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437139355|ref|ZP_20681765.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437142331|ref|ZP_20683677.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437149713|ref|ZP_20688282.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437158395|ref|ZP_20693304.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437165062|ref|ZP_20697390.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437173687|ref|ZP_20701879.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437184952|ref|ZP_20708679.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437234420|ref|ZP_20713712.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437265064|ref|ZP_20720261.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437273598|ref|ZP_20724767.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437284282|ref|ZP_20729486.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437318863|ref|ZP_20738144.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437320971|ref|ZP_20738450.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437342272|ref|ZP_20745288.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437395557|ref|ZP_20751339.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|437419337|ref|ZP_20754369.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437439030|ref|ZP_20757082.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437463856|ref|ZP_20763410.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437472385|ref|ZP_20765484.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437487624|ref|ZP_20769960.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437512336|ref|ZP_20777257.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437529090|ref|ZP_20780294.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437557226|ref|ZP_20785099.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437569663|ref|ZP_20787971.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437582260|ref|ZP_20792311.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437599747|ref|ZP_20796996.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437620799|ref|ZP_20804289.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437630214|ref|ZP_20806215.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437656126|ref|ZP_20810634.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437674567|ref|ZP_20816566.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437689544|ref|ZP_20820128.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437703300|ref|ZP_20824426.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437727914|ref|ZP_20830355.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437778152|ref|ZP_20836263.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|437817948|ref|ZP_20842832.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|437997716|ref|ZP_20854024.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|438088894|ref|ZP_20860109.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438102062|ref|ZP_20864769.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438107422|ref|ZP_20866729.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|440762781|ref|ZP_20941832.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440766581|ref|ZP_20945570.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440771670|ref|ZP_20950583.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|445130929|ref|ZP_21381539.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|445174882|ref|ZP_21397154.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445204746|ref|ZP_21401324.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|445227295|ref|ZP_21404220.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445241736|ref|ZP_21407734.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|445328672|ref|ZP_21413159.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445345144|ref|ZP_21418018.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445358869|ref|ZP_21422901.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|452122274|ref|YP_007472522.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|60392165|sp|P0A1F2.1|DAPF_SALTY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|60392166|sp|P0A1F3.1|DAPF_SALTI RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|81599710|sp|Q5PKM6.1|DAPF_SALPA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|189082839|sp|A9MY70.1|DAPF_SALPB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|229813242|sp|B5EZS3.1|DAPF_SALA4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|229813243|sp|B5FNU5.1|DAPF_SALDC RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|229813244|sp|B4TB37.1|DAPF_SALHS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|229813245|sp|B4SZ51.1|DAPF_SALNS RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|229813246|sp|B5BIV6.1|DAPF_SALPK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|229813247|sp|B4TNV9.1|DAPF_SALSV RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|25294024|pir||AC0919 diaminopimelate epimerase [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16504491|emb|CAD09373.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29139311|gb|AAO70878.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56130058|gb|AAV79564.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161366430|gb|ABX70198.1| hypothetical protein SPAB_04899 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194401956|gb|ACF62178.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194407410|gb|ACF67629.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194458106|gb|EDX46945.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194710676|gb|ACF89897.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197096208|emb|CAR61805.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197213683|gb|ACH51080.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197240379|gb|EDY22999.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197288720|gb|EDY28095.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|197937960|gb|ACH75293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199605465|gb|EDZ04010.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204320642|gb|EDZ05844.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205328124|gb|EDZ14888.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205332064|gb|EDZ18828.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205336529|gb|EDZ23293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205340934|gb|EDZ27698.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205348176|gb|EDZ34807.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|267996226|gb|ACY91111.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|312915065|dbj|BAJ39039.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320088357|emb|CBY98117.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|321225465|gb|EFX50522.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|322613024|gb|EFY09975.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322617388|gb|EFY14288.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625620|gb|EFY22442.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322627043|gb|EFY23836.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322631241|gb|EFY28004.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322638274|gb|EFY34973.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322642790|gb|EFY39377.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322646968|gb|EFY43470.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322650355|gb|EFY46768.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322656354|gb|EFY52648.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322657579|gb|EFY53849.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322665990|gb|EFY62171.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322666729|gb|EFY62906.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322671028|gb|EFY67158.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322679265|gb|EFY75317.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322681669|gb|EFY77696.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322686004|gb|EFY81992.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322716909|gb|EFZ08480.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|323192630|gb|EFZ77858.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323196496|gb|EFZ81646.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323203752|gb|EFZ88773.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323210742|gb|EFZ95618.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323215910|gb|EGA00643.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323221403|gb|EGA05821.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323227579|gb|EGA11735.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323231764|gb|EGA15875.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323236179|gb|EGA20256.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323239584|gb|EGA23632.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323244320|gb|EGA28328.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323249583|gb|EGA33495.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323250325|gb|EGA34211.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323256532|gb|EGA40263.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323259770|gb|EGA43403.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323265178|gb|EGA48676.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323268393|gb|EGA51865.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|353613176|gb|EHC65344.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|363552616|gb|EHL36900.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363553076|gb|EHL37348.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363559469|gb|EHL43635.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363559651|gb|EHL43804.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|363570679|gb|EHL54608.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|363572675|gb|EHL56565.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|363573461|gb|EHL57341.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|366054413|gb|EHN18768.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366054469|gb|EHN18823.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366056399|gb|EHN20723.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366066476|gb|EHN30643.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366070452|gb|EHN34562.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366081258|gb|EHN45207.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|366081722|gb|EHN45663.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366828703|gb|EHN55584.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372205594|gb|EHP19102.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|374355400|gb|AEZ47161.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|379987526|emb|CCF86408.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|381295584|gb|EIC36694.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381299608|gb|EIC40679.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381300159|gb|EIC41223.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381309168|gb|EIC50009.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|381316957|gb|EIC57694.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|383796357|gb|AFH43439.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|392755153|gb|EJA12067.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392768354|gb|EJA25110.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|392770489|gb|EJA27216.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|392779624|gb|EJA36288.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392780408|gb|EJA37061.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392785379|gb|EJA41958.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392791343|gb|EJA47831.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392802525|gb|EJA58737.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392805624|gb|EJA61747.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392806246|gb|EJA62357.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392807541|gb|EJA63611.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392808121|gb|EJA64174.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|392817100|gb|EJA73017.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392822625|gb|EJA78431.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|392830951|gb|EJA86593.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392836355|gb|EJA91939.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|392840873|gb|EJA96406.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|395982707|gb|EJH91906.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395985597|gb|EJH94766.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395993707|gb|EJI02799.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395999757|gb|EJI08773.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396005731|gb|EJI14705.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|396007647|gb|EJI16592.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|396012753|gb|EJI21648.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396020760|gb|EJI29599.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396021170|gb|EJI29997.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396026594|gb|EJI35360.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396026679|gb|EJI35444.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396034160|gb|EJI42862.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396039451|gb|EJI48077.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396045958|gb|EJI54548.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396047571|gb|EJI56143.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396055410|gb|EJI63896.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396060558|gb|EJI69001.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396060643|gb|EJI69085.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396072919|gb|EJI81226.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|396073400|gb|EJI81702.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396075244|gb|EJI83519.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|402526084|gb|EJW33363.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402529072|gb|EJW36320.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402529854|gb|EJW37082.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402530073|gb|EJW37296.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|414012321|gb|EKS96243.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414013674|gb|EKS97550.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414013725|gb|EKS97599.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414027491|gb|EKT10719.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414028440|gb|EKT11628.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414030682|gb|EKT13774.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414041727|gb|EKT24285.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414042538|gb|EKT25075.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414046935|gb|EKT29240.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414055647|gb|EKT37532.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|414062000|gb|EKT43369.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|434958351|gb|ELL51911.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434969399|gb|ELL62106.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434974699|gb|ELL67031.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434978151|gb|ELL70209.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434980131|gb|ELL72060.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|434987118|gb|ELL78768.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434991120|gb|ELL82640.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434993697|gb|ELL85096.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|435003902|gb|ELL94901.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|435006663|gb|ELL97539.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435010988|gb|ELM01734.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435011261|gb|ELM01982.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|435013519|gb|ELM04154.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435020286|gb|ELM10699.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435030335|gb|ELM20366.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435031935|gb|ELM21881.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435034914|gb|ELM24770.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435044003|gb|ELM33702.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435046928|gb|ELM36537.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435055958|gb|ELM45363.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435056043|gb|ELM45447.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435059389|gb|ELM48667.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435061684|gb|ELM50905.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435067442|gb|ELM56483.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435072502|gb|ELM61421.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435085693|gb|ELM74241.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435086721|gb|ELM75251.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435088046|gb|ELM76504.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435089345|gb|ELM77782.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435089400|gb|ELM77836.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435103445|gb|ELM91535.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435108055|gb|ELM96032.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435110852|gb|ELM98759.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435112015|gb|ELM99898.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435123989|gb|ELN11472.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435126011|gb|ELN13423.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435130608|gb|ELN17837.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435131722|gb|ELN18929.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435142452|gb|ELN29353.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435147525|gb|ELN34288.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435151487|gb|ELN38128.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435154475|gb|ELN41055.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435158374|gb|ELN44776.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435160328|gb|ELN46608.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435177483|gb|ELN62806.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435177793|gb|ELN63064.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435178525|gb|ELN63733.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435185573|gb|ELN70432.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435192086|gb|ELN76640.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435193051|gb|ELN77552.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435196887|gb|ELN81206.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435198715|gb|ELN82871.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435201670|gb|ELN85559.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435212779|gb|ELN95737.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435217885|gb|ELO00293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435226044|gb|ELO07639.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435230682|gb|ELO11973.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435232514|gb|ELO13609.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435241045|gb|ELO21433.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435245881|gb|ELO25909.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435250153|gb|ELO29895.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435256674|gb|ELO35969.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435263140|gb|ELO42207.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435264033|gb|ELO43055.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435272447|gb|ELO50848.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435278130|gb|ELO56002.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435282000|gb|ELO59639.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435283989|gb|ELO61501.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435291051|gb|ELO67938.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435293731|gb|ELO70395.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435303372|gb|ELO79260.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435308079|gb|ELO83088.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435317065|gb|ELO90128.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435323967|gb|ELO95945.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435333524|gb|ELP04326.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|435336125|gb|ELP06148.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|436420789|gb|ELP18646.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|436421929|gb|ELP19769.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|436422504|gb|ELP20340.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|444851263|gb|ELX76355.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|444858816|gb|ELX83789.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444861261|gb|ELX86146.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|444867069|gb|ELX91773.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444879454|gb|ELY03554.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444879726|gb|ELY03819.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444885749|gb|ELY09526.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|444890935|gb|ELY14226.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|451911278|gb|AGF83084.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 274
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + + VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPAQVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDN 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA ++ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274
>gi|423142429|ref|ZP_17130067.1| diaminopimelate epimerase [Salmonella enterica subsp. houtenae str.
ATCC BAA-1581]
gi|379050358|gb|EHY68251.1| diaminopimelate epimerase [Salmonella enterica subsp. houtenae str.
ATCC BAA-1581]
Length = 274
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + + VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPAQVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDN 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+D + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 IDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 274
>gi|417792748|ref|ZP_12440070.1| diaminopimelate epimerase [Cronobacter sakazakii E899]
gi|429117779|ref|ZP_19178697.1| Diaminopimelate epimerase [Cronobacter sakazakii 701]
gi|449309975|ref|YP_007442331.1| diaminopimelate epimerase [Cronobacter sakazakii SP291]
gi|333953179|gb|EGL71159.1| diaminopimelate epimerase [Cronobacter sakazakii E899]
gi|426320908|emb|CCK04810.1| Diaminopimelate epimerase [Cronobacter sakazakii 701]
gi|449100008|gb|AGE88042.1| diaminopimelate epimerase [Cronobacter sakazakii SP291]
Length = 274
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 167/291 (57%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +P+ +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPDMIRRLADRHQGVGFDQLLVVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D +V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKREIRVSTANGRMVLTVNEDEQVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP+ + S VP + + ++++ + V C VSMGNPHCV ++
Sbjct: 119 GEPVFEPSLVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A + GP E H FP R N F+++++ +++RV+ERGAG T ACG+GAC
Sbjct: 164 VDDVATAPVETLGPLMESHERFPERANIGFMQVMNTEHIRLRVFERGAGETQACGSGACG 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G + VDLPGG LDI WK N ++MTGPA V+ G + L
Sbjct: 224 AVAVGIQQGLLSAQVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDGFIHL 274
>gi|365972656|ref|YP_004954217.1| diaminopimelate epimerase [Enterobacter cloacae EcWSU1]
gi|365751569|gb|AEW75796.1| Diaminopimelate epimerase [Enterobacter cloacae EcWSU1]
Length = 278
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 164/292 (56%), Gaps = 23/292 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 4 MMQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDF 62
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+
Sbjct: 63 HYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTDDDLVRVN 121
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP + S VP + + ++++ + V C VSMGNPHCV +
Sbjct: 122 MGEPNFEPSAVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCV---------I 166
Query: 255 KVDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+VD + A + GP E H FP R N F++++ +++RV+ERGAG T ACG+GAC
Sbjct: 167 QVDDVETAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGAC 226
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A V + +G V+LPGG LDI WK + ++MTGPA V+ G + L
Sbjct: 227 AAVAVGIAQGLLAEEVRVELPGGRLDIAWKGPGHPLFMTGPAVHVYDGFIHL 278
>gi|167617503|ref|ZP_02386134.1| diaminopimelate epimerase [Burkholderia thailandensis Bt4]
Length = 289
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 162/292 (55%), Gaps = 14/292 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HG GNDF+++D + P +T L DR+FGIGAD ++ P V+G D+
Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGADFK 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DG E E CGNG RCF +F+ + L K S V G+I +QD+G+V VDM
Sbjct: 63 YRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTDKASVRVEVKHGVITLTMQDNGEVVVDM 121
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P+ + + VP + L ++ + L V+G ++ VSMGNPH V + +
Sbjct: 122 GAPVFEPARVPFDTSGLDGRREGADTLWPLPVNGATRWISVVSMGNPHAVQI-VDDAEAF 180
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V LA+ GP E FP R N F++I+S ++K+RV+ERGAG TLACGTGACA V
Sbjct: 181 PV----LAD-GPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAV 235
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLL 363
A + G + V GG L I W ++E + M GPA VF G + L
Sbjct: 236 AAGIRRGQLDSPVIVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDL 287
>gi|167036275|ref|YP_001671506.1| diaminopimelate epimerase [Pseudomonas putida GB-1]
gi|189082837|sp|B0KQ41.1|DAPF_PSEPG RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|166862763|gb|ABZ01171.1| Diaminopimelate epimerase [Pseudomonas putida GB-1]
Length = 276
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 169/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T +G+IV ++Q+DG+V VD
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVETKSGIIVLDVQNDGQVSVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P +P + D + L+VDG ++ VSMGNPH V L+V
Sbjct: 120 MGPPRF----IPAEIPFVADAQALSYPLEVDGQLHSIAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A E+GPK E+H FP R N F+++I + +RVWERGAG T ACGTGACA
Sbjct: 167 DDVRTAPVHELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + ++DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPVSLDLPGGRLHIEWAGPGKPVLMTGPAVRVYEGQVRL 276
>gi|423595855|ref|ZP_17571885.1| diaminopimelate epimerase [Bacillus cereus VD048]
gi|401221749|gb|EJR28363.1| diaminopimelate epimerase [Bacillus cereus VD048]
Length = 288
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 166/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIREEDLAIVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E + + GK FT+ T AG++ E+ +D KV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGK-VFTIETLAGIVTAEVTVEDDKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L ++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTREEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAE--RRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G E + TV L GG L I W EE N V M GPAE++ G
Sbjct: 233 AVVAAILNGKMEHGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEIICRG 280
>gi|222112167|ref|YP_002554431.1| diaminopimelate epimerase [Acidovorax ebreus TPSY]
gi|254767102|sp|B9MFT0.1|DAPF_DIAST RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|221731611|gb|ACM34431.1| diaminopimelate epimerase [Acidovorax ebreus TPSY]
Length = 292
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/294 (41%), Positives = 165/294 (56%), Gaps = 21/294 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI--TPEQAAKLCDRNFGIGADGVIFAMPGVN-GTD 135
+ F K G GNDF+++D T+ R+ TP Q L DR+FG+GAD ++ P G D
Sbjct: 3 IRFTKMQGAGNDFVVLDE---TQGRLGLTPAQYRFLADRHFGVGADQILTVRPSPGAGID 59
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ I N+DG + E CGNG RCFAR++ + + L + + V T AG+I P + DG+V V
Sbjct: 60 FEYVIHNADGGQVEQCGNGARCFARYVRD-KGLTAQDTIRVQTMAGVIAPHLTADGRVTV 118
Query: 196 DMGEPILKASDVP---TSLSANKDQSVVKSELDVDG----VKWNVTCVSMGNPHCVTFGT 248
DMG P L+ + VP T L+ S K L +DG V VSMGNPH V
Sbjct: 119 DMGRPELEPARVPFDTTGLAPVSQGSGQKWPLALDGQASEATLLVAVVSMGNPHAVQLVD 178
Query: 249 KEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
VD +A+ GP E H FP R N +++I++ ++++RV+ERGAG TLACGT
Sbjct: 179 D------VDTAPVAQTGPLIESHPRFPQRVNAGYLQIVNRGEVRLRVYERGAGETLACGT 232
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEE-DNHVYMTGPAEVVFYGSV 361
GACA VVA + G + R V GG L I+W + V+MTGPA VF G +
Sbjct: 233 GACAAVVAGIRLGLLDARVQVHTRGGLLTIDWAGGLQDPVFMTGPATTVFEGEI 286
>gi|410100556|ref|ZP_11295516.1| diaminopimelate epimerase [Parabacteroides goldsteinii CL02T12C30]
gi|409215591|gb|EKN08590.1| diaminopimelate epimerase [Parabacteroides goldsteinii CL02T12C30]
Length = 270
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 163/289 (56%), Gaps = 31/289 (10%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPE-QAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K HG GND+I V+ P PE QA + + GIG+DG++ + D++
Sbjct: 5 VRFTKMHGAGNDYIYVNTM--AYPLENPEKQAVRWSALHTGIGSDGLVL-IGSSEKADFS 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAG-----LIVPEIQDDGK 192
MRIFN+DGSE MCGN RC +++ + L K++ T+ T +G LIV + +
Sbjct: 62 MRIFNADGSEAMMCGNASRCIGKYVYD-AGLTDKKTVTLETLSGIKELQLIVSDDDTVSE 120
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V VDMG P + S + EL+V G + T VSMGNPH V F
Sbjct: 121 VTVDMGTPEIGESAL---------------ELEVGGQVYIGTVVSMGNPHLVIFVND--- 162
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
++ ++L IGPK E H+ FP RTN EFVE++ +++MRVWERG+G T ACGTGACA
Sbjct: 163 ---INDIDLPAIGPKLETHAFFPDRTNVEFVEVLKDDEVRMRVWERGSGITQACGTGACA 219
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VVA+V+ G +R+ V + GGPL I W E VYMTG A VF G +
Sbjct: 220 TVVASVVCGKTKRKTKVFMDGGPLTIHWDENSGKVYMTGGAVTVFEGII 268
>gi|423513595|ref|ZP_17490125.1| diaminopimelate epimerase [Bacillus cereus HuA2-1]
gi|402445260|gb|EJV77133.1| diaminopimelate epimerase [Bacillus cereus HuA2-1]
Length = 288
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 166/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIREEDLAIVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E + + GK FT+ T AG++ E+ +D KV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGK-VFTIETLAGIVTAEVTVEDDKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L ++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTREEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAE--RRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G E + T+ L GG L I W EE N V M GPAE++ G
Sbjct: 233 AVVAAILNGKMEHGKEITIHLAGGDLMIAWTEEGN-VLMKGPAEIICRG 280
>gi|432545643|ref|ZP_19782465.1| diaminopimelate epimerase [Escherichia coli KTE236]
gi|432551122|ref|ZP_19787870.1| diaminopimelate epimerase [Escherichia coli KTE237]
gi|432604643|ref|ZP_19840869.1| diaminopimelate epimerase [Escherichia coli KTE66]
gi|432624178|ref|ZP_19860190.1| diaminopimelate epimerase [Escherichia coli KTE76]
gi|432817598|ref|ZP_20051348.1| diaminopimelate epimerase [Escherichia coli KTE115]
gi|432855811|ref|ZP_20083502.1| diaminopimelate epimerase [Escherichia coli KTE144]
gi|432871700|ref|ZP_20091730.1| diaminopimelate epimerase [Escherichia coli KTE147]
gi|431070536|gb|ELD78839.1| diaminopimelate epimerase [Escherichia coli KTE236]
gi|431075975|gb|ELD83491.1| diaminopimelate epimerase [Escherichia coli KTE237]
gi|431136577|gb|ELE38435.1| diaminopimelate epimerase [Escherichia coli KTE66]
gi|431155709|gb|ELE56455.1| diaminopimelate epimerase [Escherichia coli KTE76]
gi|431360014|gb|ELG46635.1| diaminopimelate epimerase [Escherichia coli KTE115]
gi|431397096|gb|ELG80557.1| diaminopimelate epimerase [Escherichia coli KTE144]
gi|431407662|gb|ELG90871.1| diaminopimelate epimerase [Escherichia coli KTE147]
Length = 274
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTNDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|91786956|ref|YP_547908.1| diaminopimelate epimerase [Polaromonas sp. JS666]
gi|91696181|gb|ABE43010.1| diaminopimelate epimerase [Polaromonas sp. JS666]
Length = 299
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 159/289 (55%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGV-NGTDY 136
+ F K G GNDF+++D ++ Q L DR+FG+GAD ++ P G D+
Sbjct: 10 LIRFTKMQGAGNDFVMLDETRG-RLNLSTAQYRFLADRHFGVGADQILSVRPSPGEGIDF 68
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
I N+DG E E CGNG RCF RF+ E + L K + V T +G+I P +Q DG+V VD
Sbjct: 69 EYVIHNADGGEVEQCGNGARCFVRFVRE-QGLTSKDAVRVKTLSGVIEPRMQADGRVTVD 127
Query: 197 MGEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTC----VSMGNPHCVTFGTK 249
MG P+ + + +P L+A S K L ++ + T +SMGNPH V
Sbjct: 128 MGAPVFELARIPFDAAGLTAQPAGSWEKWPLTLEDKALSATVSIAVLSMGNPHAVQLVDD 187
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
VD + E GP EHH FP R N F++++S S++++RV+ERGAG TLACGTG
Sbjct: 188 ------VDTAPVLETGPLIEHHMRFPKRVNAGFMQVVSRSRIRLRVYERGAGETLACGTG 241
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEE-DNHVYMTGPAEVVF 357
ACA VVA + G + R V GG L IEW D V MTGPA VF
Sbjct: 242 ACAAVVAGIRWGLLDARVDVQTRGGQLTIEWAGGFDAPVMMTGPATTVF 290
>gi|333982105|ref|YP_004511315.1| diaminopimelate epimerase [Methylomonas methanica MC09]
gi|333806146|gb|AEF98815.1| Diaminopimelate epimerase [Methylomonas methanica MC09]
Length = 275
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/285 (40%), Positives = 162/285 (56%), Gaps = 13/285 (4%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
++F K HGLGNDF+++D + +T EQ + DR+FG+G D ++ P D+
Sbjct: 1 MINFTKMHGLGNDFVVIDAIGQ-DINLTAEQVHFIADRHFGVGCDQLLLVERPVRENADF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E CGNG RCFARF+ E + L K TV T AG ++ D G + V+
Sbjct: 60 KYRIFNADGGEVAQCGNGARCFARFVRE-KKLTAKDEVTVDTNAGQLLLRFIDGGLITVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P +P + KD++V S L+ DG + + +SMGNPH V Q V
Sbjct: 119 MGVPKHAPEQIPLLM---KDEAVQYS-LEYDGGIVSFSALSMGNPHAVI------QVEDV 168
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
L +GP E H VF R N F+++++ ++K+RV+ERGA TLACG+GACA VVA
Sbjct: 169 VSAPLETVGPWLEKHPVFSERVNVGFMQVVNRQRIKLRVYERGAAETLACGSGACAAVVA 228
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+ +G + +V LPGG L IEW V+M+GPA V+ G +
Sbjct: 229 GIEQGLLDSNVSVGLPGGDLLIEWAGRGQPVFMSGPAVSVYEGQI 273
>gi|423519618|ref|ZP_17496099.1| diaminopimelate epimerase [Bacillus cereus HuA2-4]
gi|401157759|gb|EJQ65155.1| diaminopimelate epimerase [Bacillus cereus HuA2-4]
Length = 288
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 166/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIREEDLAIVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E + + GK FT+ T AG++ E+ +D KV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGK-VFTIETLAGIVTAEVTVEDDKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L ++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGVPRLTREEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAE--RRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G E + TV L GG L I W EE N V M GPAE++ G
Sbjct: 233 AVVAAILNGKMEHGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEIICRG 280
>gi|423092984|ref|ZP_17080780.1| diaminopimelate epimerase [Pseudomonas fluorescens Q2-87]
gi|397882302|gb|EJK98789.1| diaminopimelate epimerase [Pseudomonas fluorescens Q2-87]
Length = 276
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/290 (44%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T +G+I +++ DG++ V+
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKSGIIELDVRSDGQIGVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P A + +++VDG + VSMGNPH V L+V
Sbjct: 120 MGAPRLVPADIPFEAPAQ----ALSYQVEVDGATVELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK EHH FPAR N F+++I + ++RVWERGAG T ACGTGACA
Sbjct: 167 ADINSAPVHELGPKIEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276
>gi|88813058|ref|ZP_01128300.1| Diaminopimelate epimerase [Nitrococcus mobilis Nb-231]
gi|88789691|gb|EAR20816.1| Diaminopimelate epimerase [Nitrococcus mobilis Nb-231]
Length = 277
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 164/289 (56%), Gaps = 19/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K LGNDFI++D + T ++ +Q +L +R GIG D V+ A P TD
Sbjct: 4 LRFTKMQALGNDFIVIDAMSQTVA-LSSDQIRQLSNRRLGIGCDQVLLAERPQRPDTDIR 62
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
R+FN+DG E E CGNGVRC ARF+ E + L + V T GL + + DDG + V+M
Sbjct: 63 YRVFNADGGEVEHCGNGVRCLARFLHE-KALLEQHELRVETRNGLTLVHLCDDGAIAVNM 121
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P+L+ +P K S + L ++ + + VSMGNPH V L+VD
Sbjct: 122 GPPVLEPERIP--FRPTKQAS--EYALALEDKRIMIGAVSMGNPHAV---------LQVD 168
Query: 258 KLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
++ A I GP H+ FP R N F+++IS ++++RV+ERGAG T ACGTGACA V
Sbjct: 169 DIDSAPIDTFGPLIMEHADFPQRVNVGFMQVISRDRIRLRVYERGAGETPACGTGACAAV 228
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V+ L G + R V+LPGG L I W D V+MTGPA V+ G + L
Sbjct: 229 VSGRLRGLLDARVKVNLPGGELMIYWDGGDTSVWMTGPALTVYEGEIRL 277
>gi|205354492|ref|YP_002228293.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207859149|ref|YP_002245800.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|289810546|ref|ZP_06541175.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|375003813|ref|ZP_09728151.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|375125376|ref|ZP_09770540.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|378447291|ref|YP_005234923.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|378701813|ref|YP_005183771.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|378991235|ref|YP_005254399.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|379703195|ref|YP_005244923.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|383498557|ref|YP_005399246.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|417329957|ref|ZP_12114673.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
gi|417344985|ref|ZP_12125213.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
gi|417353758|ref|ZP_12130377.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|417361758|ref|ZP_12135573.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|417369394|ref|ZP_12140598.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|417392264|ref|ZP_12155161.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|417471039|ref|ZP_12167098.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|417521672|ref|ZP_12183321.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Uganda str. R8-3404]
gi|417542854|ref|ZP_12194186.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|6960255|gb|AAF33445.1| 98% identity with E. coli diaminopimelate epimerase (DAPF)
(SP:P08885) [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|16422511|gb|AAL22791.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|62130049|gb|AAX67752.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|205274273|emb|CAR39292.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|206710952|emb|CAR35320.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|261249070|emb|CBG26931.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|301160462|emb|CBW19992.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|323132294|gb|ADX19724.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|326629626|gb|EGE35969.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|332990782|gb|AEF09765.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|353074134|gb|EHB39896.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|353563495|gb|EHC29835.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
gi|353563673|gb|EHC29955.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|353583149|gb|EHC43597.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|353584338|gb|EHC44477.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|353612568|gb|EHC64919.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|353623809|gb|EHC73002.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|353640858|gb|EHC85732.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Uganda str. R8-3404]
gi|353657855|gb|EHC98197.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|357953512|gb|EHJ80030.1| Diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
gi|380465378|gb|AFD60781.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
Length = 275
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 162/289 (56%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MMQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+
Sbjct: 60 HYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTEDELVRVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP + + VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 MGEPNFEPAQVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVD 166
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 NVDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAV 226
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA ++ G + L
Sbjct: 227 AVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 275
>gi|113866258|ref|YP_724747.1| diaminopimelate epimerase [Ralstonia eutropha H16]
gi|123134519|sp|Q0KF42.1|DAPF_RALEH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|113525034|emb|CAJ91379.1| diaminopimelate epimerase [Ralstonia eutropha H16]
Length = 288
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 160/289 (55%), Gaps = 12/289 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
L F K HG GNDF+++D + + +TP Q L R+FG+GAD + I P D+
Sbjct: 3 LQFTKMHGAGNDFVVLDGIHQ-QIDLTPAQWRALASRHFGVGADQILIVEKPSRPDVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI N+DGSE E CGNG RCF RF+ + + + K+S V G+I +QDDG+V VDM
Sbjct: 62 YRIVNADGSEVEHCGNGARCFVRFVTD-KGMTDKRSVRVEVMNGVITLTLQDDGQVTVDM 120
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G P L+ + VP L + + L+V+G ++ VSMGNPH V
Sbjct: 121 GAPELEPARVPFRAEGLPTRAEGADTLYGLEVNGRTEWISVVSMGNPHAVQVVDD----- 175
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V+ + + GP EHH+ FP R N F+++ +++RV+ERGAG TLACGTGACA V
Sbjct: 176 -VENFPVLQDGPVVEHHAAFPNRVNAGFMQVQDRHAIRLRVYERGAGETLACGTGACAAV 234
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA + G + V GG L I W V MTGPA VF GS+ L
Sbjct: 235 VAGIRRGLLDSPVRVHTHGGDLTIAWDGGAEPVRMTGPATTVFEGSIDL 283
>gi|423484994|ref|ZP_17461683.1| diaminopimelate epimerase [Bacillus cereus BAG6X1-2]
gi|401136394|gb|EJQ43984.1| diaminopimelate epimerase [Bacillus cereus BAG6X1-2]
Length = 288
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 164/289 (56%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIREEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L FT+ T AG++ E+ +D KV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIETLAGIVTAEVTVEDDKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L ++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTREEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVND--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V++ L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE N V M GPAEV+ +G
Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICHG 280
>gi|156935866|ref|YP_001439782.1| diaminopimelate epimerase [Cronobacter sakazakii ATCC BAA-894]
gi|429107074|ref|ZP_19168943.1| Diaminopimelate epimerase [Cronobacter malonaticus 681]
gi|166224257|sp|A7MQK2.1|DAPF_ENTS8 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|156534120|gb|ABU78946.1| hypothetical protein ESA_03749 [Cronobacter sakazakii ATCC BAA-894]
gi|426293797|emb|CCJ95056.1| Diaminopimelate epimerase [Cronobacter malonaticus 681]
Length = 274
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 167/291 (57%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +P+ +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPDMIRRLADRHQGVGFDQLLVVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D +V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKREIRVSTANGRMVLTVNEDEQVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP+ + S VP + + ++++ + V C VSMGNPHCV ++
Sbjct: 119 GEPVFEPSLVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A + GP E H FP R N F+++++ +++RV+ERGAG T ACG+GAC
Sbjct: 164 VDDVATAPVETLGPLMESHERFPERANIGFMQVMNTEHIRLRVFERGAGETQACGSGACG 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G + VDLPGG LDI WK N ++MTGPA V+ G + L
Sbjct: 224 AVAVGIQQGLLAAQVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDGFIHL 274
>gi|26991904|ref|NP_747329.1| diaminopimelate epimerase [Pseudomonas putida KT2440]
gi|24987027|gb|AAN70793.1|AE016723_5 diaminopimelate epimerase [Pseudomonas putida KT2440]
Length = 287
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/295 (43%), Positives = 171/295 (57%), Gaps = 19/295 (6%)
Query: 73 RRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGV 131
R + L F K HGLGNDF+++D S I P+ A + DR+ G+G D + I P
Sbjct: 8 RSKPMLLRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNN 66
Query: 132 NGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG 191
D+ RIFN+DGSE E CGNG RCFARF+ + + L K+ V T +G+IV ++Q+DG
Sbjct: 67 PEVDFRYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVETKSGIIVLDVQNDG 125
Query: 192 KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
+V VDMG P +P + D + L+VDG ++ VSMGNPH V
Sbjct: 126 QVSVDMGPPRF----IPAEIPFVADAQALNYPLEVDGQLHSIAAVSMGNPHAV------- 174
Query: 252 QNLKVDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
L+VD + A E+GPK E+H FP R N F+++I + +RVWERGAG T ACGT
Sbjct: 175 --LRVDDVQTAPVHELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGT 232
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
GACA VAA+ +G + ++DLPGG L IEW V MTGPA V+ G V L
Sbjct: 233 GACAAAVAAISQGWMDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 287
>gi|187734112|ref|YP_001882503.1| diaminopimelate epimerase [Shigella boydii CDC 3083-94]
gi|229813249|sp|B2TUW5.1|DAPF_SHIB3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|187431104|gb|ACD10378.1| diaminopimelate epimerase [Shigella boydii CDC 3083-94]
Length = 274
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVIEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VS+GNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSIGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|420277940|ref|ZP_14780218.1| diaminopimelate epimerase [Escherichia coli PA40]
gi|425195868|ref|ZP_18592623.1| diaminopimelate epimerase [Escherichia coli NE1487]
gi|425208723|ref|ZP_18604505.1| diaminopimelate epimerase [Escherichia coli FRIK2001]
gi|390755751|gb|EIO25282.1| diaminopimelate epimerase [Escherichia coli PA40]
gi|408105678|gb|EKH37825.1| diaminopimelate epimerase [Escherichia coli NE1487]
gi|408118670|gb|EKH49789.1| diaminopimelate epimerase [Escherichia coli FRIK2001]
Length = 274
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 161/288 (55%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + + P E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLAPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|152980602|ref|YP_001354891.1| diaminopimelate epimerase [Janthinobacterium sp. Marseille]
gi|151280679|gb|ABR89089.1| diaminopimelate epimerase [Janthinobacterium sp. Marseille]
Length = 276
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/281 (41%), Positives = 154/281 (54%), Gaps = 12/281 (4%)
Query: 85 HGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADG-VIFAMPGVNGTDYTMRIFNS 143
HG GNDF+++D N TP Q L DR FG+GAD ++ P G D+ RI+N+
Sbjct: 2 HGAGNDFVVIDAINQA-INFTPAQWQYLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNA 60
Query: 144 DGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILK 203
DG E E CGNG R F RF+ + + L K++ V T +G+I P ++ +G++ VDMG PIL
Sbjct: 61 DGGEVEQCGNGARAFVRFVTD-KKLTDKRAIKVETMSGIIEPRLEANGQITVDMGAPILN 119
Query: 204 ASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLN 260
DVP L + LD+ G ++ VSMGNPH V V++
Sbjct: 120 PEDVPFDTRDLLCKAEGEDTLWPLDIKGETNWISVVSMGNPHAVQVVAD------VEEAP 173
Query: 261 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLE 320
+ E G EHH FP R N F++I+ +K+RV+ERGAG TLACGTGACA VVA +
Sbjct: 174 VREDGVLIEHHPRFPKRVNAGFMQILDQHHIKLRVFERGAGETLACGTGACAAVVAGIRR 233
Query: 321 GHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
G V GG L I W D+ V MTGPA VF G +
Sbjct: 234 GLLVSPVKVQTRGGELVIAWGGRDSPVMMTGPAVTVFEGEI 274
>gi|383815919|ref|ZP_09971325.1| diaminopimelate epimerase [Serratia sp. M24T3]
gi|383295209|gb|EIC83537.1| diaminopimelate epimerase [Serratia sp. M24T3]
Length = 274
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 164/291 (56%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DRN G+G D ++ P + D+
Sbjct: 1 MQFAKMHGLGNDFMVVDAV-TQNVYFSPELIRRLSDRNRGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ ++ L K+ V T G + + +D V+V+M
Sbjct: 60 YRIFNADGSEVMQCGNGARCFARFV-RIKGLTNKREIQVSTQNGRMTLTVTEDELVEVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + +P + ++++E + V C VSMGNPHCV L+
Sbjct: 119 GEPIFEPQQIPFRAPKPEKTYILRAE------EHTVLCGVVSMGNPHCV---------LQ 163
Query: 256 VDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A +GP E H FP R N F+++I + +K+RV+ERGAG T ACG+GACA
Sbjct: 164 VDDVVTAGVEHLGPLLESHERFPERVNVGFMQVIHTASIKLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G VDLPGG L+I WK + ++MTGPA V+ G + L
Sbjct: 224 AVAIGIHQGLLAEEVQVDLPGGSLNIRWKGPGHPLFMTGPATHVYDGFIHL 274
>gi|325271630|ref|ZP_08138132.1| diaminopimelate epimerase [Pseudomonas sp. TJI-51]
gi|324103234|gb|EGC00579.1| diaminopimelate epimerase [Pseudomonas sp. TJI-51]
Length = 276
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T +G+IV ++Q+DG+V VD
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVETKSGIIVLDVQNDGQVSVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P +++P D + L+VDG ++ VSMGNPH V L+V
Sbjct: 120 MGPPRFTPAEIPFV----ADAQALNYPLEVDGQLHSIAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A E+GPK E+H FP R N F+++I + +RVWERGAG T ACGTGACA
Sbjct: 167 DDVRTAPVHELGPKIENHPRFPQRVNAGFLQVIDRHRANLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + ++DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPVSLDLPGGRLHIEWAGPGKPVVMTGPAVRVYEGQVRL 276
>gi|160896900|ref|YP_001562482.1| diaminopimelate epimerase [Delftia acidovorans SPH-1]
gi|160362484|gb|ABX34097.1| Diaminopimelate epimerase [Delftia acidovorans SPH-1]
Length = 286
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/292 (41%), Positives = 160/292 (54%), Gaps = 23/292 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPG-VNGTDYT 137
+ F K G GNDF+++D + ++ Q L R FG+GAD ++ P G D+
Sbjct: 3 IRFTKMQGAGNDFVVLDE-TAGPLGLSAAQYRFLAHRQFGVGADQILTVRPSPAEGIDFE 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
I N+DG E E CGNG RCFAR++ + + L GK V T AGLI PE+ DG+V VDM
Sbjct: 62 YVIHNADGGEVEQCGNGARCFARYVHD-KGLTGKSVIRVQTLAGLIAPELHADGRVTVDM 120
Query: 198 GEPILK--------ASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTK 249
G+P+L+ A VP L A + + +L + W + VSMGNPH V
Sbjct: 121 GQPVLEPSLVPFNGADLVPRPLGAAQQWPL---QLGDEATVW-IAPVSMGNPHAVQLVDD 176
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
VD +A GP E H FP R N F++I+ Q+++RV+ERGAG TLACGTG
Sbjct: 177 ------VDHAPVATWGPLIERHVRFPQRVNAGFMQIVDRGQIRLRVYERGAGETLACGTG 230
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
ACA VVA + G + R V GG L IEW + V MTGPAE VF G +
Sbjct: 231 ACAAVVAGIRWGLLDARVDVHTRGGRLTIEW--DGGAVRMTGPAEFVFEGQI 280
>gi|423123007|ref|ZP_17110691.1| diaminopimelate epimerase [Klebsiella oxytoca 10-5246]
gi|376391760|gb|EHT04430.1| diaminopimelate epimerase [Klebsiella oxytoca 10-5246]
Length = 274
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 164/291 (56%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTEDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + V C VSMGNPHCV ++
Sbjct: 119 GEPNFEPSQVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A + GP E H FP R N F++++ ++++RV+ERGAG T ACG+GACA
Sbjct: 164 VDNVETAAVETLGPVMESHERFPERANIGFMQVVERDRIRLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G V+LPGG LDI WK ++MTGPA V+ G + L
Sbjct: 224 AVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGQPLFMTGPAAHVYDGFIHL 274
>gi|424901755|ref|ZP_18325271.1| diaminopimelate epimerase [Burkholderia thailandensis MSMB43]
gi|390932130|gb|EIP89530.1| diaminopimelate epimerase [Burkholderia thailandensis MSMB43]
Length = 282
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 159/289 (55%), Gaps = 20/289 (6%)
Query: 85 HGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNS 143
HG GNDF+++D + P +T Q L DR+FGIGAD ++ P V+G D+ RIFN
Sbjct: 2 HGAGNDFVVLDGYSRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNC 61
Query: 144 DGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILK 203
DG E E CGNG RCF +F+ + L + S V G+I +QD+G+V VDMG P+ +
Sbjct: 62 DGGEVEHCGNGARCFVKFVRD-RGLTDEASVRVEVKHGVITLTMQDNGEVVVDMGAPVFE 120
Query: 204 ASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLN 260
+ VP + L ++ + L V+G ++ VSMGNPH V VD
Sbjct: 121 PARVPFDASGLEGRREGADTLWPLPVNGATRWISVVSMGNPHAVQI---------VDDAK 171
Query: 261 LAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
A + GP E H FP R N F++I+S ++ +RV+ERGAG TLACGTGACA V A
Sbjct: 172 AAPVLADGPAIERHPRFPQRVNAGFMQIVSRHEVNLRVYERGAGETLACGTGACAAVAAG 231
Query: 318 VLEGHAERRCTVDLPGGPLDIEW---KEEDNHVYMTGPAEVVFYGSVLL 363
+ G + TV GG L I W ++E + M GPA VF G + L
Sbjct: 232 IRRGQLDSPVTVHTHGGTLTISWDGARDERAPLKMAGPATTVFEGVIEL 280
>gi|292486678|ref|YP_003529548.1| diaminopimelate epimerase [Erwinia amylovora CFBP1430]
gi|292897915|ref|YP_003537284.1| diaminopimelate epimerase [Erwinia amylovora ATCC 49946]
gi|428783604|ref|ZP_19001099.1| diaminopimelate epimerase [Erwinia amylovora ACW56400]
gi|291197763|emb|CBJ44858.1| diaminopimelate epimerase [Erwinia amylovora ATCC 49946]
gi|291552095|emb|CBA19132.1| Diaminopimelate epimerase [Erwinia amylovora CFBP1430]
gi|312170744|emb|CBX79006.1| Diaminopimelate epimerase [Erwinia amylovora ATCC BAA-2158]
gi|426277890|gb|EKV55613.1| diaminopimelate epimerase [Erwinia amylovora ACW56400]
Length = 274
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 164/291 (56%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVYFSPELIRRLADRHLGIGFDQLLIVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K V T +G ++ + D V V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKSEIRVSTQSGRMILSVTQDELVCVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + +P ANK +++ + V+ V C VSMGNPHCV ++
Sbjct: 119 GEPGFEPQQIP--FRANKAENIYL----MRAVEQTVMCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A + GP E H FP R N F+E++ +++RV+ERGAG T ACG+GACA
Sbjct: 164 VDNVKTAAVETLGPVLESHERFPERVNVGFMEVMHREHIRLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G + VDLPGG L+I WK + ++MTGPA V+ G + L
Sbjct: 224 AVAVGIQQGLLAEKVRVDLPGGSLNIAWKGPGHPLFMTGPATHVYDGFIHL 274
>gi|440745480|ref|ZP_20924772.1| diaminopimelate epimerase [Pseudomonas syringae BRIP39023]
gi|440372484|gb|ELQ09285.1| diaminopimelate epimerase [Pseudomonas syringae BRIP39023]
Length = 276
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 167/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKSGIIELDIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P VP + + +DVDG + VSMGNPH V L+V
Sbjct: 120 MGPPRF----VPEEIPFEAAEQATCYTVDVDGQNIEMAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A E+GPK EHH FPAR N F+ ++ + ++RVWERGAG T ACGTGACA
Sbjct: 167 DDINNAPVHELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276
>gi|423300544|ref|ZP_17278569.1| diaminopimelate epimerase [Bacteroides finegoldii CL09T03C10]
gi|408472842|gb|EKJ91367.1| diaminopimelate epimerase [Bacteroides finegoldii CL09T03C10]
Length = 269
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/295 (40%), Positives = 165/295 (55%), Gaps = 46/295 (15%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITP-EQAAKLCDRNFGIGADGVIFAMPGV-NGTDY 136
+ F K HG GND+I VD + P P ++A + + GIG+DG+I + GV + D+
Sbjct: 5 IKFTKMHGAGNDYIYVDT--TQYPIADPAKKAIEWSKFHTGIGSDGLI--LIGVSDKADF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
+MRIFN+DGSE MCGNG RC +++ E L K T+ T +G+ + ++ +GK
Sbjct: 61 SMRIFNADGSEAMMCGNGSRCVGKYVYEY-GLTDKTEITLDTRSGIKILKLHVEGKTVSA 119
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWN------VTCVSMGNPHCVTF 246
V VDMG P L+ + ++W T VSMGNPH VTF
Sbjct: 120 VTVDMGSP-----------------------LETEEIQWGGKYPFRSTKVSMGNPHLVTF 156
Query: 247 GTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLAC 306
+ ++NL EIGP+ E+H +FP RTN EF +I+S ++MRVWERG+G T AC
Sbjct: 157 VED------ITRINLPEIGPELENHPLFPDRTNVEFAQIVSKDTIRMRVWERGSGITQAC 210
Query: 307 GTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
GTGACA VAA + G R+ V + GG + IEW E H+ MTGPA VF G +
Sbjct: 211 GTGACATAVAAFINGLTGRKSDVIMDGGTVTIEWDEISGHILMTGPATKVFDGEI 265
>gi|49481006|ref|YP_038958.1| diaminopimelate epimerase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|196032886|ref|ZP_03100299.1| diaminopimelate epimerase [Bacillus cereus W]
gi|196043802|ref|ZP_03111039.1| diaminopimelate epimerase [Bacillus cereus 03BB108]
gi|206976422|ref|ZP_03237329.1| diaminopimelate epimerase [Bacillus cereus H3081.97]
gi|217962402|ref|YP_002340974.1| diaminopimelate epimerase [Bacillus cereus AH187]
gi|225866910|ref|YP_002752288.1| diaminopimelate epimerase [Bacillus cereus 03BB102]
gi|375286927|ref|YP_005107366.1| diaminopimelate epimerase [Bacillus cereus NC7401]
gi|376268843|ref|YP_005121555.1| diaminopimelate epimerase [Bacillus cereus F837/76]
gi|423355405|ref|ZP_17333029.1| diaminopimelate epimerase [Bacillus cereus IS075]
gi|423375491|ref|ZP_17352828.1| diaminopimelate epimerase [Bacillus cereus AND1407]
gi|423571828|ref|ZP_17548066.1| diaminopimelate epimerase [Bacillus cereus MSX-A12]
gi|81613513|sp|Q6HBW8.1|DAPF_BACHK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|226724205|sp|B7HUS8.1|DAPF_BACC7 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|254767091|sp|C1EX98.1|DAPF_BACC3 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|49332562|gb|AAT63208.1| diaminopimelate epimerase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|195994315|gb|EDX58270.1| diaminopimelate epimerase [Bacillus cereus W]
gi|196025138|gb|EDX63808.1| diaminopimelate epimerase [Bacillus cereus 03BB108]
gi|206745346|gb|EDZ56746.1| diaminopimelate epimerase [Bacillus cereus H3081.97]
gi|217064842|gb|ACJ79092.1| diaminopimelate epimerase [Bacillus cereus AH187]
gi|225789422|gb|ACO29639.1| diaminopimelate epimerase [Bacillus cereus 03BB102]
gi|358355454|dbj|BAL20626.1| diaminopimelate epimerase [Bacillus cereus NC7401]
gi|364514643|gb|AEW58042.1| Diaminopimelate epimerase [Bacillus cereus F837/76]
gi|401083737|gb|EJP91992.1| diaminopimelate epimerase [Bacillus cereus IS075]
gi|401092177|gb|EJQ00311.1| diaminopimelate epimerase [Bacillus cereus AND1407]
gi|401199423|gb|EJR06325.1| diaminopimelate epimerase [Bacillus cereus MSX-A12]
Length = 288
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 166/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L FT+ T AG++ E+ ++GKV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIETLAGIVTAEVTVEEGKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTRAEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V++ L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVA++L G ER TV L GG L I W EE N V M GPAEV+ +G
Sbjct: 233 AVVASILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICHG 280
>gi|384189048|ref|YP_005574944.1| diaminopimelate epimerase [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410677383|ref|YP_006929754.1| diaminopimelate epimerase DapF [Bacillus thuringiensis Bt407]
gi|452201455|ref|YP_007481536.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|326942757|gb|AEA18653.1| diaminopimelate epimerase [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409176512|gb|AFV20817.1| diaminopimelate epimerase DapF [Bacillus thuringiensis Bt407]
gi|452106848|gb|AGG03788.1| Diaminopimelate epimerase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 288
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/289 (43%), Positives = 165/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L + FT+ T AG++ E+ +DG V
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFTIETLAGIVTAEVTVEDGFVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTRAEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVED--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE N V M GPAEV+ G
Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
>gi|218233484|ref|YP_002369736.1| diaminopimelate epimerase [Bacillus cereus B4264]
gi|226724204|sp|B7HBI0.1|DAPF_BACC4 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|218161441|gb|ACK61433.1| diaminopimelate epimerase [Bacillus cereus B4264]
Length = 288
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/289 (43%), Positives = 165/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L + FT+ T AG++ E+ +DG V
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFTIETLAGIVTAEVTVEDGVVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTRAEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE N V M GPAEV+ G
Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
>gi|427399724|ref|ZP_18890962.1| diaminopimelate epimerase [Massilia timonae CCUG 45783]
gi|425721486|gb|EKU84399.1| diaminopimelate epimerase [Massilia timonae CCUG 45783]
Length = 286
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 158/289 (54%), Gaps = 13/289 (4%)
Query: 79 LHFVKYHGLGNDFILVD--NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTD 135
L F K HG GNDF+++D N+ ++ + +L DR FGIGAD ++ V+ G
Sbjct: 3 LKFTKMHGAGNDFVVIDAINQEIDVDGMSADGWQRLADRRFGIGADQILVVERPVDAGVV 62
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ RIFN+DGSE E CGNG R F RF+ E + L ++S V T +G+I P ++DDG V V
Sbjct: 63 FRYRIFNNDGSEVEQCGNGSRAFVRFVVE-KGLTQERSIRVQTMSGVINPRLEDDGNVTV 121
Query: 196 DMGEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
DMG P L ++VP L + L V G ++ VSMGNPH V
Sbjct: 122 DMGAPRLDPAEVPFDSAGLDGKPEGEDTLWPLPVGGEATQISVVSMGNPHAVQV------ 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + + GP EHH FP R N +++++ +++RV ERGAG TLACGTGACA
Sbjct: 176 VHNVDTALVEQTGPLIEHHERFPKRVNAGYMQVVDRHHIRLRVHERGAGETLACGTGACA 235
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VVA + G + V GG L I W VY++GPA VF G V
Sbjct: 236 AVVAGIRRGLLDSPVRVSARGGELSIAWAGAGQPVYLSGPAVSVFEGEV 284
>gi|423417140|ref|ZP_17394229.1| diaminopimelate epimerase [Bacillus cereus BAG3X2-1]
gi|401108558|gb|EJQ16489.1| diaminopimelate epimerase [Bacillus cereus BAG3X2-1]
Length = 288
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/289 (43%), Positives = 163/289 (56%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIREEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L FT+ T AG++ E+ +D KV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIETLAGIVTAEVTVEDDKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L ++P + D ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTREEIP--MLGEGDTPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF++I++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNIEFIQILNDEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE N V M GPAEV+ G
Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
>gi|386014499|ref|YP_005932776.1| protein DapF [Pseudomonas putida BIRD-1]
gi|313501205|gb|ADR62571.1| DapF [Pseudomonas putida BIRD-1]
Length = 276
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/290 (44%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ G+G D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T +G+IV ++Q+DG+V VD
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVETKSGIIVLDVQNDGQVSVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P +P + D + L+VDG ++ VSMGNPH V L+V
Sbjct: 120 MGPPRF----IPAEIPFVADAQALSYPLEVDGQLHSIAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D ++ A E+GPK E+H FP R N F+++I + +RVWERGAG T ACGTGACA
Sbjct: 167 DDVHTAPVHELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + ++DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276
>gi|437257279|ref|ZP_20715871.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435167435|gb|ELN53359.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
Length = 274
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + + VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPAQVPFRANKAEKTYIMRAAEQI------ILCGVVSMGNPHCVI------QVDN 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA ++ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274
>gi|42784120|ref|NP_981367.1| diaminopimelate epimerase [Bacillus cereus ATCC 10987]
gi|402554950|ref|YP_006596221.1| diaminopimelate epimerase [Bacillus cereus FRI-35]
gi|81568769|sp|Q72YE7.1|DAPF_BACC1 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|42740051|gb|AAS43975.1| diaminopimelate epimerase [Bacillus cereus ATCC 10987]
gi|401796160|gb|AFQ10019.1| diaminopimelate epimerase [Bacillus cereus FRI-35]
Length = 288
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 165/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L FT+ T AG++ E+ ++GKV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIETLAGIVTAEVTVEEGKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTRAEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD+ L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VDQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVA++L G ER TV L GG L I W EE N V M GPAEV+ G
Sbjct: 233 AVVASILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
>gi|423573387|ref|ZP_17549506.1| diaminopimelate epimerase [Bacillus cereus MSX-D12]
gi|401214934|gb|EJR21655.1| diaminopimelate epimerase [Bacillus cereus MSX-D12]
Length = 288
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 166/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L FT+ T AG++ E+ ++GKV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIETLAGIVTAEVTVEEGKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTRAEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V++ L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVA++L G ER TV L GG L I W EE N V M GPAEV+ +G
Sbjct: 233 AVVASILNGKMERGKEITVHLAGGDLMIAWAEEGN-VLMKGPAEVICHG 280
>gi|398939617|ref|ZP_10668710.1| diaminopimelate epimerase [Pseudomonas sp. GM41(2012)]
gi|398163939|gb|EJM52088.1| diaminopimelate epimerase [Pseudomonas sp. GM41(2012)]
Length = 276
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ V+
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKRQIRVETKSGIIELDIRSDGQIGVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L VP + + ++DVDG ++ VSMGNPH V L+V
Sbjct: 120 MGAPRL----VPAEIPFEAPEQATSYQVDVDGTLVDLAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+N A E+GPK E+HS FPAR N F+++I S+ ++RVWERG G T ACGTGACA
Sbjct: 167 SDINNAPVHELGPKIENHSRFPARVNVGFLQVIDRSRAQLRVWERGTGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL 276
>gi|340001396|ref|YP_004732280.1| diaminopimelate epimerase [Salmonella bongori NCTC 12419]
gi|339514758|emb|CCC32528.1| diaminopimelate epimerase [Salmonella bongori NCTC 12419]
Length = 274
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTEDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + + VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPAQVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDN 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVDTLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEDVRVELPGGRLDIAWKGPGHPLYMTGPAAHVYDGFIHL 274
>gi|206970158|ref|ZP_03231111.1| diaminopimelate epimerase [Bacillus cereus AH1134]
gi|365163088|ref|ZP_09359211.1| diaminopimelate epimerase [Bacillus sp. 7_6_55CFAA_CT2]
gi|423427058|ref|ZP_17404089.1| diaminopimelate epimerase [Bacillus cereus BAG3X2-2]
gi|423438358|ref|ZP_17415339.1| diaminopimelate epimerase [Bacillus cereus BAG4X12-1]
gi|423507561|ref|ZP_17484129.1| diaminopimelate epimerase [Bacillus cereus HD73]
gi|449091959|ref|YP_007424400.1| diaminopimelate epimerase [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|116062043|dbj|BAF34654.1| diaminopimelate epimerase [Bacillus cereus]
gi|206734735|gb|EDZ51904.1| diaminopimelate epimerase [Bacillus cereus AH1134]
gi|363617373|gb|EHL68772.1| diaminopimelate epimerase [Bacillus sp. 7_6_55CFAA_CT2]
gi|401109673|gb|EJQ17595.1| diaminopimelate epimerase [Bacillus cereus BAG3X2-2]
gi|401117811|gb|EJQ25646.1| diaminopimelate epimerase [Bacillus cereus BAG4X12-1]
gi|402443842|gb|EJV75736.1| diaminopimelate epimerase [Bacillus cereus HD73]
gi|449025716|gb|AGE80879.1| diaminopimelate epimerase [Bacillus thuringiensis serovar kurstaki
str. HD73]
Length = 288
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 125/289 (43%), Positives = 165/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L + FT+ T AG++ E+ +DG V
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFTIETLAGIVTAEVTVEDGVVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTRAEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNNDEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE N V M GPAEV+ G
Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
>gi|323524463|ref|YP_004226616.1| diaminopimelate epimerase [Burkholderia sp. CCGE1001]
gi|323381465|gb|ADX53556.1| diaminopimelate epimerase [Burkholderia sp. CCGE1001]
Length = 287
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 161/292 (55%), Gaps = 16/292 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HG GNDF+++D T+P +TP Q L DR+FG+GAD ++ P V+G D+
Sbjct: 3 LKFTKMHGAGNDFVVLDG--YTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVDGVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN DG E E CGNG RCF +F+ + L ++S V G I +Q++G+V VD
Sbjct: 61 RYRIFNCDGGEVEHCGNGARCFVKFVRD-SGLTDQRSVRVQVQKGTITLTMQENGEVLVD 119
Query: 197 MGEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
MG P+ + VP L ++ + LDV+G ++ VSMGNPH V
Sbjct: 120 MGLPVFEPERVPFATKGLEGRREGADTLWPLDVNGTTRWISVVSMGNPHAVQVVDD---- 175
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V+ + GP E H+ FP R N F++I+ S++++RV+ERGAG TLACGTGACA
Sbjct: 176 --VEAFPVLVEGPVIERHARFPQRVNAGFMQIVGRSEIRLRVYERGAGETLACGTGACAA 233
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEW--KEEDNHVYMTGPAEVVFYGSVLL 363
V A + G + V GG L I W + + M GPA VF G + L
Sbjct: 234 VAAGIRRGLLDAPVLVHTHGGTLTISWDSNKASEPLLMAGPATTVFQGEIEL 285
>gi|423411285|ref|ZP_17388405.1| diaminopimelate epimerase [Bacillus cereus BAG3O-2]
gi|423432930|ref|ZP_17409934.1| diaminopimelate epimerase [Bacillus cereus BAG4O-1]
gi|401108301|gb|EJQ16233.1| diaminopimelate epimerase [Bacillus cereus BAG3O-2]
gi|401113181|gb|EJQ21051.1| diaminopimelate epimerase [Bacillus cereus BAG4O-1]
Length = 288
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 125/289 (43%), Positives = 165/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L + FT+ T AG++ E+ +DG V
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFTIETLAGIVTAEVTVEDGVVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTRAEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNNDEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE N V M GPAEV+ G
Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
>gi|300313578|ref|YP_003777670.1| diaminopimelate epimerase [Herbaspirillum seropedicae SmR1]
gi|300076363|gb|ADJ65762.1| diaminopimelate epimerase protein [Herbaspirillum seropedicae SmR1]
Length = 287
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 162/289 (56%), Gaps = 12/289 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGV-NGTDYT 137
+ F K HG GNDF+++D N + ++P Q + DR FGIGAD ++ G D+
Sbjct: 3 IKFTKMHGAGNDFVVLDAINQS-ISLSPAQWQFIADRRFGIGADQMLVVEKARGEGVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RI+N+DG E E CGNG R F +F+ + + L K++ V T +G+I P ++DDG++ VDM
Sbjct: 62 YRIYNADGGEVEQCGNGARAFVKFVTD-KGLTSKRAIRVETMSGVIEPRLEDDGQITVDM 120
Query: 198 GEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
G PIL +DVP L + LDV G ++ VSMGNPH V ++ +
Sbjct: 121 GAPILTPADVPFDSHGLQHRNEAEDTLWPLDVAGKTTWISVVSMGNPHAVQV-VEDSEAA 179
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V L+E GP E H FP R N F++++ + +RV+ERGAG TLACGTGACA V
Sbjct: 180 PV----LSE-GPLIERHERFPKRVNAGFMQVVDRHHVNLRVYERGAGETLACGTGACAAV 234
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VA + G + V GG L+I W V MTGPA V+ G + L
Sbjct: 235 VAGIRRGLLDSPVAVQTHGGVLNIAWAGPGEAVMMTGPAVSVYEGEIEL 283
>gi|238756292|ref|ZP_04617607.1| Diaminopimelate epimerase [Yersinia ruckeri ATCC 29473]
gi|238705498|gb|EEP97900.1| Diaminopimelate epimerase [Yersinia ruckeri ATCC 29473]
Length = 278
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 164/291 (56%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 5 MQFSKMHGLGNDFMVVDAV-TQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFH 63
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ ++ L K+ V T G +V + DD V V+M
Sbjct: 64 YRIFNADGSEVSQCGNGARCFARFV-RIKGLTNKRDIRVSTQTGRMVLSVTDDEMVSVNM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + +P + ++++ + V C VSMGNPHCV L+
Sbjct: 123 GEPNFEPQAIPFKAIKAEKTYILRA------AEHTVLCGVVSMGNPHCV---------LQ 167
Query: 256 VDKL---NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + N+ +GP+ E+H FP R N F++++S +++RV+ERGAG T ACG+GACA
Sbjct: 168 VDDVSAANVELLGPELENHERFPERANIGFMQVVSRQHIRLRVYERGAGETQACGSGACA 227
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + + + V+LPGG LDI WK +YMTGPA V+ G + L
Sbjct: 228 AVAVGIQQALLDEDVHVELPGGSLDISWKGLGQPLYMTGPATHVYDGFIHL 278
>gi|32171422|sp|Q88CF3.1|DAPF_PSEPK RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
Length = 276
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 128/290 (44%), Positives = 169/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ G+G D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T +G+IV ++Q+DG+V VD
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVETKSGIIVLDVQNDGQVSVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P +P + D + L+VDG ++ VSMGNPH V L+V
Sbjct: 120 MGPPRF----IPAEIPFVADAQALNYPLEVDGQLHSIAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + A E+GPK E+H FP R N F+++I + +RVWERGAG T ACGTGACA
Sbjct: 167 DDVQTAPVHELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + ++DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276
>gi|407697847|ref|YP_006822635.1| diaminopimelate epimerase [Alcanivorax dieselolei B5]
gi|407255185|gb|AFT72292.1| Diaminopimelate epimerase [Alcanivorax dieselolei B5]
Length = 292
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 159/292 (54%), Gaps = 20/292 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITP----EQAAKLCDRNFGIGADGVIFAMPG-VNG 133
L F K HGLGNDF++VD P P E+ +L DR+FGIG D ++ P G
Sbjct: 3 LKFTKMHGLGNDFVVVDGVRQPLPENGPPLPAEELRRLGDRHFGIGFDQMLVVQPARKEG 62
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKV 193
D+ RIFNSDGSE CGNG RCFARF+ + E L K V T AG + + DDG V
Sbjct: 63 VDFRYRIFNSDGSEVNQCGNGARCFARFVRD-EELTDKHEIRVETAAGEMTLRVTDDGLV 121
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG P +P + A D+ + + + + V+ V +GNPHCV
Sbjct: 122 TVDMGAPRWAPEAIPFTAKAEADRYFLVAGNN----GYEVSAVGLGNPHCVLLVEN---- 173
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
VD + +GP E H FP R N F+++I +++++RV+ERGAG TLACG+GACA
Sbjct: 174 --VDNAPVDTVGPLLESHEQFPERVNVGFMQVIGRNEIRLRVYERGAGETLACGSGACAA 231
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIE--WKEEDNH--VYMTGPAEVVFYGSV 361
V+ G + TV L GG L + + +D H V MTGPA V+ G++
Sbjct: 232 VLCGQRLGLLDDTVTVHLLGGTLQVHYPYSSQDGHSGVLMTGPASRVYDGAI 283
>gi|261416204|ref|YP_003249887.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385791069|ref|YP_005822192.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261372660|gb|ACX75405.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302325663|gb|ADL24864.1| diaminopimelate epimerase [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 284
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 126/306 (41%), Positives = 164/306 (53%), Gaps = 45/306 (14%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-AAKLCDRNFGIGADGVIFAMP-------- 129
++F K+ GLGNDF+L++ S + EQ KLCDR FGIGADGV+ P
Sbjct: 1 MNFSKWTGLGNDFVLLEPGESLDFSSGFEQRIIKLCDRRFGIGADGVVVVTPMDGDGCLV 60
Query: 130 --GV----------NGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE--LENLNGKQSFT 175
G+ NG D+ MRIFN+DGSE MCGN RC A++I L + F
Sbjct: 61 LNGISEGPVSKAVANGVDFEMRIFNADGSEAAMCGNATRCVAKYIQTRGLAKDANTKVFN 120
Query: 176 VHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC 235
+HT +GL+ P + DDG+V VDMG P T L + K L D +
Sbjct: 121 LHTKSGLVRPALLDDGRVCVDMGLP-------RTFLGSIK--------LTADCYDFTAET 165
Query: 236 VSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRV 295
VSMGNPH V F ++K+ L G E FP R N EF ++++P +++MRV
Sbjct: 166 VSMGNPHAVIFVDD------IEKIQLENWGSVLEVDRQFPDRCNIEFAQVVAPGKIRMRV 219
Query: 296 WERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEV 355
WERG G T+ACGTG+CA +VAA G V L GG L I+ EED V MTGPA+
Sbjct: 220 WERGCGVTMACGTGSCATLVAAQRTGRVGVEADVILDGGTLHIK-HEEDGPVLMTGPAQE 278
Query: 356 VFYGSV 361
VF G++
Sbjct: 279 VFKGTI 284
>gi|387812854|ref|YP_005428331.1| diaminopimelate epimerase [Marinobacter hydrocarbonoclasticus ATCC
49840]
gi|381337861|emb|CCG93908.1| diaminopimelate epimerase [Marinobacter hydrocarbonoclasticus ATCC
49840]
Length = 283
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/265 (43%), Positives = 153/265 (57%), Gaps = 18/265 (6%)
Query: 103 RITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARF 161
R+ P+ +L DRNFGIG D ++ P G+ D+ RIFN+DGSE E CGNG RCFARF
Sbjct: 10 RLAPDTIRELADRNFGIGFDQLLVVEPPGLPDVDFRYRIFNADGSEVEQCGNGARCFARF 69
Query: 162 IAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVK 221
+ + + L K+ V T G+I ++ DG V V+MG P L +P + KD V
Sbjct: 70 VRD-QRLTNKRVIRVQTAKGVIELKVGRDGLVAVNMGVPELNPPAIPFAADQRKDVYTV- 127
Query: 222 SELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEI---GPKFEHHSVFPART 278
DV+G ++ +SMGNPH V L VD ++ A + GP+ E H FPAR
Sbjct: 128 ---DVNGQTVELSAISMGNPHGV---------LVVDNVDTAPVESLGPQLEKHPRFPARA 175
Query: 279 NTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDI 338
N F+++I ++RV+ERG+G TLACG+GACA VVA L G + R V+L GG L I
Sbjct: 176 NIGFLQVIDRRHARLRVFERGSGETLACGSGACAAVVAGCLRGLLDSRVEVELRGGRLVI 235
Query: 339 EWKEEDNHVYMTGPAEVVFYGSVLL 363
EW+ E V M GPA VF G + L
Sbjct: 236 EWQGEGTPVMMEGPATTVFEGQLRL 260
>gi|163796736|ref|ZP_02190694.1| Diaminopimelate epimerase [alpha proteobacterium BAL199]
gi|159177990|gb|EDP62537.1| Diaminopimelate epimerase [alpha proteobacterium BAL199]
Length = 278
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 119/284 (41%), Positives = 155/284 (54%), Gaps = 17/284 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPE-QAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
L F K HGLGNDF++VD R P E Q + DR G+G D + +P NG
Sbjct: 4 LAFTKMHGLGNDFVVVDGR--VHPATLSEVQYRAVGDRRRGVGYDQFLTILPARNGGTAY 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
M I N DG+E + CGNG RC A A L G+ + T AG ++ DG+V VDM
Sbjct: 62 MAIHNPDGTEAQACGNGTRCVA---AVLMGETGQSEVAIETIAGRLICTDAGDGRVTVDM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G L +P + D + + G T V+MGNPH V F +
Sbjct: 119 GPANLDWRAIPLA----SDTDTLSVTVPEAGTFGPATAVNMGNPHAVFFVPD------AE 168
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++L+ +GP+ EH +VFP R N EFV +++ +L+MRVWER AG T ACG+GACA +VAA
Sbjct: 169 AVDLSTVGPRIEHSAVFPERANIEFVTVLARDRLRMRVWERSAGITQACGSGACAALVAA 228
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V G ERR TV L GGPL+I W+ D HV MTGP F G++
Sbjct: 229 VRRGLTERRATVVLDGGPLEIFWR-SDGHVEMTGPVATSFAGTL 271
>gi|451928997|pdb|4IK0|A Chain A, Crystal Structure Of Diaminopimelate Epimerase Y268a
Mutant From Escherichia Coli
gi|451928998|pdb|4IK0|B Chain B, Crystal Structure Of Diaminopimelate Epimerase Y268a
Mutant From Escherichia Coli
Length = 280
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 112/278 (40%), Positives = 157/278 (56%), Gaps = 17/278 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPA 353
+ +G V+LPGG LDI WK + +YMTGPA
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPA 264
>gi|423608715|ref|ZP_17584607.1| diaminopimelate epimerase [Bacillus cereus VD102]
gi|401237350|gb|EJR43805.1| diaminopimelate epimerase [Bacillus cereus VD102]
Length = 288
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 166/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L FT+ T AG++ E+ ++GKV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIETLAGIVTAEVTVEEGKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTRAEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V++ L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVA++L G ER TV L GG L I W EE N V M GPAEV+ +G
Sbjct: 233 AVVASILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICHG 280
>gi|384182782|ref|YP_005568544.1| diaminopimelate epimerase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|324328866|gb|ADY24126.1| diaminopimelate epimerase [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 288
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 165/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINIGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L FT+ T AG++ E+ ++GKV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIETLAGIVTAEVTVEEGKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTRAEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V++ L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVA++L G ER TV L GG L I W EE N V M GPAEV+ G
Sbjct: 233 AVVASILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
>gi|423307061|ref|ZP_17285060.1| diaminopimelate epimerase [Bacteroides uniformis CL03T00C23]
gi|423308356|ref|ZP_17286346.1| diaminopimelate epimerase [Bacteroides uniformis CL03T12C37]
gi|392676954|gb|EIY70374.1| diaminopimelate epimerase [Bacteroides uniformis CL03T00C23]
gi|392687592|gb|EIY80884.1| diaminopimelate epimerase [Bacteroides uniformis CL03T12C37]
Length = 282
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 163/290 (56%), Gaps = 19/290 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDR-NFGIGADGVIFAMPGVNGTDYT 137
+ F K HG GND+I VD + P PE+ A+ + GIG+DG++ + + D++
Sbjct: 5 IKFTKMHGAGNDYIYVDT--TQYPISHPEELARAWSAPHTGIGSDGLVL-IGSSDKADFS 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKVK-- 194
MRIFN+DGSE MCGN RC +++ + L K T+ T +G+ + + DGKV
Sbjct: 62 MRIFNADGSEARMCGNASRCIGKYLFDY-GLTSKTEITLDTLSGIRMLNLHLADGKVNSV 120
Query: 195 -VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG P +D P + + + ++VDG ++ T VSMGNPH V F
Sbjct: 121 TVDMGIP----ADEPADYDGKGAKPMKEQPIEVDGERYVGTTVSMGNPHLVIFVND---- 172
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
++ ++L IGPK E+H +FP R N EF +I+ +++MRVWERG+G T ACGTGACA
Sbjct: 173 --IEAIDLTVIGPKLENHPLFPGRINVEFAQILGEGKIRMRVWERGSGITQACGTGACAT 230
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA L G A R + + GG L I W HV MTG A VF G + L
Sbjct: 231 AVAAFLTGRAGRESIIIMDGGSLTIRWDIATRHVLMTGEATKVFDGKIEL 280
>gi|395446119|ref|YP_006386372.1| diaminopimelate epimerase [Pseudomonas putida ND6]
gi|397697139|ref|YP_006535022.1| diaminopimelate epimerase [Pseudomonas putida DOT-T1E]
gi|388560116|gb|AFK69257.1| diaminopimelate epimerase [Pseudomonas putida ND6]
gi|397333869|gb|AFO50228.1| diaminopimelate epimerase [Pseudomonas putida DOT-T1E]
Length = 276
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 128/290 (44%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + + L K+ V T +G+IV ++Q+DG+V V+
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVETKSGIIVLDVQNDGQVSVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P +P + D L+VDG +++ VSMGNPH V L+V
Sbjct: 120 MGPPRF----IPAEIPFVADAQAPSYPLEVDGQLYSIAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D ++ A E+GPK E+H FP R N F+++I + +RVWERGAG T ACGTGACA
Sbjct: 167 DDVSTAPVHELGPKIENHPRFPQRVNAGFIQVIDRHRANLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + ++DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPVSLDLPGGRLHIEWAGPGKPVMMTGPAVRVYEGQVRL 276
>gi|330826619|ref|YP_004389922.1| diaminopimelate epimerase [Alicycliphilus denitrificans K601]
gi|329311991|gb|AEB86406.1| Diaminopimelate epimerase [Alicycliphilus denitrificans K601]
Length = 292
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 120/294 (40%), Positives = 161/294 (54%), Gaps = 21/294 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI--TPEQAAKLCDRNFGIGADGVIFAMPG-VNGTD 135
+ F K G GNDF+++D T R+ TP Q L DR+FG+GAD ++ P G D
Sbjct: 3 IRFTKMQGAGNDFVVLDE---TRERLGLTPAQYRFLADRHFGVGADQILTVRPSPAEGID 59
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ I N+DG + + CGNG RCFAR++ + + L K V T AG+I PE+ DG+V V
Sbjct: 60 FEYLIHNADGGQVQQCGNGARCFARYVRD-KGLTAKDRIRVQTMAGVIAPELTADGRVTV 118
Query: 196 DMGEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVT----CVSMGNPHCVTFGT 248
DMG P+L + +P L SV K L +DG T VSMGNPH V
Sbjct: 119 DMGRPVLDPARLPFDTAGLVPVPQGSVKKWPLALDGQAPQATVMIVAVSMGNPHAVQLVD 178
Query: 249 KEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
VD +A GP E H FP R N +++++ +++++RV+ERGAG TLACGT
Sbjct: 179 D------VDSAPVARTGPLIEGHPRFPQRVNAGYLQVVGRTEVRLRVYERGAGETLACGT 232
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEE-DNHVYMTGPAEVVFYGSV 361
GACA VVA + G + R V GG L I W + V+MTGPA VF G +
Sbjct: 233 GACAAVVAGIGLGLLDARVDVHTRGGLLTIAWAGGLQDPVFMTGPATTVFEGQI 286
>gi|423471121|ref|ZP_17447865.1| diaminopimelate epimerase [Bacillus cereus BAG6O-2]
gi|402432601|gb|EJV64657.1| diaminopimelate epimerase [Bacillus cereus BAG6O-2]
Length = 288
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 166/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIREEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E + + GK FT+ T AG++ E+ +D KV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGK-VFTIETLAGIVTAEVTVEDDKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L ++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTREEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAE--RRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G E + TV L GG L I W +E N V M GPAE++ G
Sbjct: 233 AVVAAILNGKMEHDKEITVHLAGGDLMIAWTKEGN-VLMKGPAEIICRG 280
>gi|88797198|ref|ZP_01112788.1| diaminopimelate epimerase [Reinekea blandensis MED297]
gi|88780067|gb|EAR11252.1| diaminopimelate epimerase [Reinekea sp. MED297]
Length = 274
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 161/287 (56%), Gaps = 20/287 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
L F K HGLGNDF+++D ++ E + DR+FG+G D ++ P D+
Sbjct: 3 LKFTKMHGLGNDFMVIDGVTQA-VELSAELIEQWADRHFGVGFDQLLLVEPPTRPDRDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE E CGNG RCFARF+ + L + V T G + ++D+G+V VDM
Sbjct: 62 YRIFNADGSEVENCGNGARCFARFVLD-NQLIQNTTIRVETAGGDLELRVEDNGEVTVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P + +P D +++V +++ +++GNPHCVT +VD
Sbjct: 121 GRPRTRPDKIPFL----ADDKAALYDINVLDETLSISAINVGNPHCVT---------RVD 167
Query: 258 KLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
+ A++ GP E H FP R N F++I+ S +++RV+ERG G TLACGTGACA V
Sbjct: 168 DVLTADVERLGPALEDHERFPQRVNAGFMQIVDRSNIRLRVFERGVGETLACGTGACAAV 227
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA VL G + +V LPGG L I W E N + MTGPA V+ G +
Sbjct: 228 VAGVLNGWLDHTVSVTLPGGKLTIHWAGEGN-ILMTGPATRVYEGVI 273
>gi|270296607|ref|ZP_06202806.1| diaminopimelate epimerase [Bacteroides sp. D20]
gi|270272594|gb|EFA18457.1| diaminopimelate epimerase [Bacteroides sp. D20]
Length = 282
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 163/290 (56%), Gaps = 19/290 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDR-NFGIGADGVIFAMPGVNGTDYT 137
+ F K HG GND+I VD + P PE+ A+ + GIG+DG++ + + D++
Sbjct: 5 IKFTKMHGAGNDYIYVDT--TQYPISHPEELARAWSAPHTGIGSDGLVL-IGSSDKADFS 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKVK-- 194
MRIFN+DGSE MCGN RC +++ + L K T+ T +G+ + + DGKV
Sbjct: 62 MRIFNADGSEARMCGNASRCIGKYLFDY-GLTSKTEITLDTLSGIRMLNLHLADGKVNSV 120
Query: 195 -VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG P +D P + + + ++VDG ++ T VSMGNPH V F
Sbjct: 121 TVDMGIP----ADEPADYDGKGAKPMKEQPIEVDGERYVGTTVSMGNPHLVIFVND---- 172
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
++ + L IGPK E+H +FP R N EF +I+ +++MRVWERG+G T ACGTGACA
Sbjct: 173 --IEAIGLTVIGPKLENHPLFPGRINVEFAQILGEGKIRMRVWERGSGITQACGTGACAT 230
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA L G A R + + GG L+I W HV MTG A VF G + L
Sbjct: 231 AVAAFLTGRAGRESIIIMDGGSLNIRWDIATRHVLMTGEATKVFDGKIEL 280
>gi|218906133|ref|YP_002453967.1| diaminopimelate epimerase [Bacillus cereus AH820]
gi|226724202|sp|B7JDJ2.1|DAPF_BACC0 RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|218535645|gb|ACK88043.1| diaminopimelate epimerase [Bacillus cereus AH820]
Length = 288
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 166/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L FT+ T AG++ E+ ++GKV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIETLAGIVTAEVTVEEGKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTRAEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V++ L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVA++L G ER TV L GG L I W EE N V M GPAEV+ +G
Sbjct: 233 AVVASILNGKMERGKEITVHLAGGDLMIAWIEEGN-VLMKGPAEVICHG 280
>gi|218131255|ref|ZP_03460059.1| hypothetical protein BACEGG_02861 [Bacteroides eggerthii DSM 20697]
gi|217986557|gb|EEC52892.1| diaminopimelate epimerase [Bacteroides eggerthii DSM 20697]
Length = 283
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/293 (39%), Positives = 168/293 (57%), Gaps = 21/293 (7%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAK-LCDRNFGIGADGVIFAMPGVNG-TD 135
+ F K HG GND+I VD + P PE+ +K + GIG+DG++ + G +G D
Sbjct: 4 IIKFTKMHGAGNDYIYVDT--TRYPIGNPEKLSKEWSALHTGIGSDGLV--LIGRSGKAD 59
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK--- 192
++MRIFN+DGSE +MCGN RC +++ + + L K T+ T +G+ ++ +
Sbjct: 60 FSMRIFNADGSEAKMCGNASRCIGKYLYDYK-LTSKTEITLDTLSGIKTLKLHVENNKVD 118
Query: 193 -VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
V VDMG P + P + + + + +++DGV++ T VSMGNPH V F
Sbjct: 119 TVTVDMGIPACE----PACYDGKEGKPMKEHPIEIDGVRYTGTTVSMGNPHLVIFVND-- 172
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+ K++L IGPK E+H FP R N EF +++ +++MRVWERG+G T ACGTGAC
Sbjct: 173 ----ITKVDLPVIGPKLENHPFFPGRINVEFAQVLGEGRIRMRVWERGSGITQACGTGAC 228
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
A VAA L G + R+ TV + GG L IEW HV+MTG A VF G N
Sbjct: 229 ATAVAAFLTGRSGRKATVIMDGGALTIEWDVATGHVFMTGNAIRVFDGEAETN 281
>gi|410722008|ref|ZP_11361325.1| diaminopimelate epimerase [Methanobacterium sp. Maddingley MBC34]
gi|410597939|gb|EKQ52541.1| diaminopimelate epimerase [Methanobacterium sp. Maddingley MBC34]
Length = 290
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 116/301 (38%), Positives = 165/301 (54%), Gaps = 31/301 (10%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQ--AAKLCDRNFGIGADGVIFAMPGVNGTD 135
L F K HGLGND++++D + A++LC R F +GADGVIF +P G D
Sbjct: 6 ILLFHKMHGLGNDYVVIDESIEEIIPEEKKPEIASELCTRGFSVGADGVIFVVPSA-GED 64
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAE----------LENLNGKQSFTVHTGAGLIVP 185
RIFNSDGSE EMCGNG+RCF +++ E +E L G + T+H G++
Sbjct: 65 IRFRIFNSDGSEAEMCGNGIRCFGKYVYENDVLKQKKMSVETLGGTKELTLHVENGIV-- 122
Query: 186 EIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVT 245
++V+MG K S++P ++ + EL VD +T +S+GNPH +
Sbjct: 123 -----KSIRVNMGIATFKTSEIPMDCD---EEEFIDQELLVDDEPLKLTAISVGNPHAII 174
Query: 246 FGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLA 305
F T + + +D L GP E+H FP RTN FV ++SP +++M WERGAG T+A
Sbjct: 175 F-TDNLEGVALDHL-----GPLIENHDAFPERTNVHFVGVVSPQEVEMLTWERGAGFTMA 228
Query: 306 CGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHV--YMTGPAEVVFYGSVLL 363
CGTGA + V+A G ++ V LPGG L I E+D + +M G A VF G + L
Sbjct: 229 CGTGATSTVIAGYKMGLLQKDVLVHLPGGDLQITVYEKDGKLGAFMEGDAVSVFEGIMEL 288
Query: 364 N 364
+
Sbjct: 289 D 289
>gi|423583135|ref|ZP_17559246.1| diaminopimelate epimerase [Bacillus cereus VD014]
gi|401209195|gb|EJR15954.1| diaminopimelate epimerase [Bacillus cereus VD014]
Length = 288
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 166/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L + FT+ T AG++ E+ ++GKV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFTIETLAGIVTAEVTVEEGKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + ++ + ++ T VSMGNPH + F
Sbjct: 121 AKIDMGAPRLTRAEIP--MLGEDETPFIRENFLYNNHRYAFTAVSMGNPHAIIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE + V M GPAEV+ G
Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGS-VLMKGPAEVICRG 280
>gi|419357522|ref|ZP_13898767.1| diaminopimelate epimerase [Escherichia coli DEC13C]
gi|378195623|gb|EHX56119.1| diaminopimelate epimerase [Escherichia coli DEC13C]
Length = 274
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 161/288 (55%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
EP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 DEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|319764398|ref|YP_004128335.1| diaminopimelate epimerase [Alicycliphilus denitrificans BC]
gi|317118959|gb|ADV01448.1| diaminopimelate epimerase [Alicycliphilus denitrificans BC]
Length = 292
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 120/294 (40%), Positives = 161/294 (54%), Gaps = 21/294 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI--TPEQAAKLCDRNFGIGADGVIFAMPG-VNGTD 135
+ F K G GNDF+++D T R+ TP Q L DR+FG+GAD ++ P G D
Sbjct: 3 IRFTKMQGAGNDFVVLDE---TRERLGLTPAQYRFLADRHFGVGADQILTVRPSPAEGID 59
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ I N+DG + + CGNG RCFAR++ + + L K V T AG+I PE+ DG+V V
Sbjct: 60 FEYLIHNADGGQVQQCGNGARCFARYVRD-KGLTAKDRIRVQTMAGVIAPELTADGRVTV 118
Query: 196 DMGEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVT----CVSMGNPHCVTFGT 248
DMG P+L + +P L SV K L +DG T VSMGNPH V
Sbjct: 119 DMGRPVLDPARLPFDTAGLVPVPQGSVKKWPLALDGKAPQATVMIVAVSMGNPHAVQLVD 178
Query: 249 KEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
VD +A GP E H FP R N +++++ +++++RV+ERGAG TLACGT
Sbjct: 179 D------VDSAPVARTGPLIEGHPRFPQRVNAGYLQVVGRTEVRLRVYERGAGETLACGT 232
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEE-DNHVYMTGPAEVVFYGSV 361
GACA VVA + G + R V GG L I W + V+MTGPA VF G +
Sbjct: 233 GACAAVVAGIGLGLLDARVDVHTRGGLLTIAWAGGLQDPVFMTGPATTVFEGQI 286
>gi|421503007|ref|ZP_15949959.1| diaminopimelate epimerase [Pseudomonas mendocina DLHK]
gi|400346464|gb|EJO94822.1| diaminopimelate epimerase [Pseudomonas mendocina DLHK]
Length = 276
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 172/290 (59%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D S + P+ A + DR+ G+G D ++ P + D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LISQHAHVQPKHAKQWGDRHTGVGFDQLLIVEPPSHPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K++ V T +G+I +Q+DG+V V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTTKKTIRVETKSGVIELRVQNDGQVCVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L+ + VP +Q+ + +DV+G + +SMGNPH V L+V
Sbjct: 120 MGAPRLEPAQVPF----QAEQAALTYRVDVEGQSVELAALSMGNPHAV---------LRV 166
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D ++ A + GPK EHH FP R N F++++ ++RVWERGAG T ACGTGACA
Sbjct: 167 DNVDSAPVHTLGPKLEHHPRFPQRVNVGFLQVLDRKHARLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + ++LPGG L IEW E V MTGPA V+ G V L
Sbjct: 227 AVAAIRQGWMDSPLQLELPGGKLSIEWAGEGQPVMMTGPAARVYEGQVRL 276
>gi|15679334|ref|NP_276451.1| diaminopimelate epimerase [Methanothermobacter thermautotrophicus
str. Delta H]
gi|2622441|gb|AAB85812.1| diaminopimelate epimerase [Methanothermobacter thermautotrophicus
str. Delta H]
Length = 289
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 167/293 (56%), Gaps = 18/293 (6%)
Query: 78 FLHFVKYHGLGNDFILVDN--RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTD 135
+ F K HGLGND++++D + PE ++C R F +GADGVIF P D
Sbjct: 4 MILFSKMHGLGNDYVVIDESAQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPASGEGD 63
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV- 193
RIFN+DGSE EMCGNG+RCF++F+ + + K+ V T AG+ E++ +DG V
Sbjct: 64 IRFRIFNADGSEAEMCGNGIRCFSKFVYD-NAIVRKRRLEVETLAGIKTVELEVEDGAVV 122
Query: 194 --KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
+VDMG K +P + ++ + L V+G +T +S+GNPH + F +
Sbjct: 123 SSRVDMGTATFKTDQIPMDV---EEYEFIDRFLPVEGEDIKLTALSVGNPHAIIF-VDDA 178
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+ + +D+L GP E+H +FP R N FVE++SPS++ M WERGAG T+ACGTGA
Sbjct: 179 EGVDLDRL-----GPAIENHPLFPERINVHFVEVVSPSEIIMVTWERGAGPTMACGTGAT 233
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHV--YMTGPAEVVFYGSVL 362
A V+A V + V LPGG L I+ ++ + YM G A +VF G +L
Sbjct: 234 ASVIAGVKLEKLDDSVLVHLPGGELKIDVYQDGTELGAYMEGDAVMVFDGILL 286
>gi|229163916|ref|ZP_04291856.1| Diaminopimelate epimerase [Bacillus cereus R309803]
gi|228619537|gb|EEK76423.1| Diaminopimelate epimerase [Bacillus cereus R309803]
Length = 288
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 165/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L + FT+ T AG++ E+ ++GKV
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFTIETLAGIVTAEVTVEEGKVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L ++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTREEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVED--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V++ L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEEAPLTTLGPVLETHEMFPERVNVEFIEILNDEEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE N V M GPAEV+ G
Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
>gi|229105556|ref|ZP_04236190.1| Diaminopimelate epimerase [Bacillus cereus Rock3-28]
gi|228677826|gb|EEL32069.1| Diaminopimelate epimerase [Bacillus cereus Rock3-28]
Length = 288
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 165/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQILEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L + FT+ T AG++ E+ +DG V
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFTIETLAGIVTAEVTVEDGVVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTRAEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAE--RRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G E + TV L GG L I W EE N V M GPAEV+ G
Sbjct: 233 AVVAAILNGKLEHGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
>gi|417692134|ref|ZP_12341338.1| diaminopimelate epimerase [Shigella boydii 5216-82]
gi|332084674|gb|EGI89862.1| diaminopimelate epimerase [Shigella boydii 5216-82]
Length = 274
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFA F+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFACFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G + V+LPGG LDI WK + +YMTGPA V+ G + L
Sbjct: 227 VGIQQGLLDEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL 274
>gi|114561632|ref|YP_749145.1| diaminopimelate epimerase [Shewanella frigidimarina NCIMB 400]
gi|122300905|sp|Q088K8.1|DAPF_SHEFN RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|114332925|gb|ABI70307.1| diaminopimelate epimerase [Shewanella frigidimarina NCIMB 400]
Length = 275
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 166/287 (57%), Gaps = 13/287 (4%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+HF K HGLGNDF++VD + +PEQ +L DRNFGIG D ++ P + D+
Sbjct: 1 MIHFTKMHGLGNDFMVVDGV-TQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ + L K V T +G I I+ DG V V+
Sbjct: 60 HYRIFNADGSEVEQCGNGARCFARFVRN-KGLTQKNKIRVSTNSGKITLRIERDGNVTVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P+++ S +P ++ ++++ + + +SMGNPHCV Q V
Sbjct: 119 MGVPVIEPSQIPFKAKKSEKTYLLQTPMQT----YLCGAISMGNPHCVI------QVEDV 168
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
+N+ EIG H FP N F+++I+P +K+RV+ERGA TLACGTGACA
Sbjct: 169 QTVNVDEIGSSLTRHERFPKGVNVGFMQVINPGHIKLRVYERGAAETLACGTGACAAAAV 228
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
L+ +++ VDLPGG L I W+ E ++MTGPAE V+ G + L
Sbjct: 229 GQLQDKLDKQVRVDLPGGSLIINWEGEGKPLWMTGPAEHVYDGQIQL 275
>gi|337278583|ref|YP_004618054.1| Diaminopimelate epimerase [Ramlibacter tataouinensis TTB310]
gi|334729659|gb|AEG92035.1| Candidate Diaminopimelate epimerase [Ramlibacter tataouinensis
TTB310]
Length = 289
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 157/291 (53%), Gaps = 16/291 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPG-VNGTDYT 137
+ F K G GNDF+++D + +TP Q L DR+FGIGAD ++ P G D+
Sbjct: 3 IRFTKMQGAGNDFVVLDETRAPLA-LTPAQYRWLADRHFGIGADQILSVRPSPAPGIDFA 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
I N+DG E E CGNG RCF RF+ E L K + V T ++ + DG+V VDM
Sbjct: 62 YAIHNADGGEVEHCGNGARCFVRFVRE-RGLTDKATVKVQTVNQVLELRMLPDGRVTVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSE---LDVDGV----KWNVTCVSMGNPHCVTFGTKE 250
G P+ VP + + + V + L + G V +SMGNPH V
Sbjct: 121 GAPVFDLPAVPFDAAGLRPEPVGAWQAWPLTLPGAGDRAAVRVAVLSMGNPHAVA----- 175
Query: 251 GQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
+ VD ++A +GP E H+ FP R N F++++S +++RVWERGAG TLACGTGA
Sbjct: 176 -EVEDVDTASVATLGPLIEGHARFPRRVNAGFMQVLSRGAIRLRVWERGAGETLACGTGA 234
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
CA VVA + G +RR V GG L IEW E V MTGPA VF G +
Sbjct: 235 CAAVVAGIRLGRLDRRVDVHTRGGVLTIEWAGEGQPVLMTGPATTVFEGEI 285
>gi|265750458|ref|ZP_06086521.1| diaminopimelate epimerase [Bacteroides sp. 3_1_33FAA]
gi|263237354|gb|EEZ22804.1| diaminopimelate epimerase [Bacteroides sp. 3_1_33FAA]
Length = 280
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 159/294 (54%), Gaps = 31/294 (10%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAA-KLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K G GND+I V+ P P + + K + GIG+DG++ D++
Sbjct: 5 IKFTKMQGAGNDYIYVNTLR--HPIADPVRTSIKWSSCHTGIGSDGLVLIGKSTKA-DFS 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAE----------LENLNGKQSFTVHTGAGLIVPEI 187
MRIFN+DGSE MCGN RC +++ + LE L+G + +HT GL+
Sbjct: 62 MRIFNADGSEAMMCGNASRCIGKYVYDNKLTQKEVITLETLSGIKILKLHTENGLV---- 117
Query: 188 QDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFG 247
+V VDM P+L S + D ++ + VDG ++ T V MGNPH V F
Sbjct: 118 ---EEVTVDMDLPLLTNSRQINT----PDGKMLAKTITVDGKEYKGTFVCMGNPHLVIFI 170
Query: 248 TKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACG 307
+ +NL IGPK E+H +FP RTN EFVE++ L+MRVWERG+G T+ACG
Sbjct: 171 DD------IKNVNLPAIGPKLENHPLFPERTNVEFVEVLPDGSLRMRVWERGSGITMACG 224
Query: 308 TGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
TGACA VAA L R+ V + GG L + W E D HVYMTGPA VF G +
Sbjct: 225 TGACATAVAAYLNHKTGRKSRVRMDGGDLQVHWNETDGHVYMTGPAVKVFDGEI 278
>gi|425902286|ref|ZP_18878877.1| diaminopimelate epimerase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397881813|gb|EJK98301.1| diaminopimelate epimerase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 277
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 129/291 (44%), Positives = 170/291 (58%), Gaps = 20/291 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DRN G+G D + I P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRNTGVGFDQLLIVEAPSNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I ++++DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTTKRQIRVETKSGIIELDVRNDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDG-VKWNVTCVSMGNPHCVTFGTKEGQNLK 255
MG P L +P A + +++VDG + VSMGNPH V L+
Sbjct: 120 MGAPRLVPEQIPFVAPAQ----ALSYQVEVDGQTTVELAAVSMGNPHAV---------LR 166
Query: 256 VDKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+ +N A E+GPK EHH FPAR N F+++I + ++RVWERGAG T ACGTGACA
Sbjct: 167 VNDINSAPVHELGPKIEHHPRFPARVNVGFIQVIDRQRAQLRVWERGAGETQACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW V MTGPA V+ G V L
Sbjct: 227 AAVAAISQGWMDSPLLIDLPGGRLSIEWAGPGQPVKMTGPAVRVYEGQVRL 277
>gi|298156138|gb|EFH97244.1| Diaminopimelate epimerase [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
Length = 276
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 127/290 (43%), Positives = 167/290 (57%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ VD
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKSGIIELDIRSDGQISVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P VP + + + ++VDG + VSMGNPH V L+V
Sbjct: 120 MGPPRF----VPEEIPFEAAEQATRYNVEVDGQNIELAAVSMGNPHAV---------LRV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A E+GPK EHH FPAR N F+ ++ + ++RVWER AG T ACGTGACA
Sbjct: 167 DDINNAPVHELGPKIEHHPRFPARVNVGFLHVVDRQRAQLRVWERSAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + +DLPGG L IEW + V MTGPA V+ G V L
Sbjct: 227 AVAAISQGWMDSPLLIDLPGGRLSIEWAGPGHSVMMTGPAVRVYEGQVRL 276
>gi|91781473|ref|YP_556679.1| diaminopimelate epimerase [Burkholderia xenovorans LB400]
gi|123169125|sp|Q146W2.1|DAPF_BURXL RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|91685427|gb|ABE28627.1| diaminopimelate epimerase [Burkholderia xenovorans LB400]
Length = 287
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 158/292 (54%), Gaps = 16/292 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDY 136
L F K HG GNDF+++D T+P +TP Q L DR+FG+GAD ++ P V G D+
Sbjct: 3 LKFTKMHGAGNDFVVLDG--YTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN DG E E CGNG RCF +F+ E L ++S V G I +Q++G+V VD
Sbjct: 61 RYRIFNCDGGEVEHCGNGARCFVKFVRE-RGLTDQRSVRVQVQKGTITLTMQENGEVLVD 119
Query: 197 MGEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
MG P+ VP L ++ + LDV G ++ VSMGNPH V
Sbjct: 120 MGTPVFDPERVPFATKGLEGRREGADTLWPLDVSGTTRWISVVSMGNPHAVQVVGD---- 175
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V+ + GP E H+ FP R N F++I+ +++++RV+ERGAG TLACGTGACA
Sbjct: 176 --VEAFPVLAEGPVIERHARFPQRVNAGFMQIVGRNEIRLRVYERGAGETLACGTGACAA 233
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWK--EEDNHVYMTGPAEVVFYGSVLL 363
V A + G + V GG L I W E + M GPA VF G + L
Sbjct: 234 VAAGIRRGLLDSPVRVHTHGGDLTISWDSTREGEPLLMAGPAVTVFEGEIEL 285
>gi|378957086|ref|YP_005214573.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|438141974|ref|ZP_20875183.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|357207697|gb|AET55743.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|434939620|gb|ELL46411.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
Length = 274
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFV-RLKGLINKRDIRVSTANGRMVLSVTEDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + + VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPAQVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDN 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA ++ G + L
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 274
>gi|251787834|ref|YP_003002555.1| diaminopimelate epimerase [Dickeya zeae Ech1591]
gi|247536455|gb|ACT05076.1| diaminopimelate epimerase [Dickeya zeae Ech1591]
Length = 274
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 162/288 (56%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVYFSPELIRRLSDRHCGVGFDQLLIVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTSKREINVSTHNGRMVLSVTEDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + VP + ++++ + V C VSMGNPHCV Q
Sbjct: 119 GEPNFEPQQVPFRAVKPEKTYILRA------AERTVLCGVVSMGNPHCVL------QVEN 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD ++ E+GP E+H FP R N F+++++P +++RV+ERGAG T ACG+GACA V
Sbjct: 167 VDSASVEELGPLLENHERFPERANVGFMQVVNPHLIRLRVFERGAGETQACGSGACAAVA 226
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V LPGG LDI W ++MTGPA V+ G + L
Sbjct: 227 VGIQQGLLAADVKVQLPGGELDIHWDGPGQPLFMTGPATHVYDGFIHL 274
>gi|146305307|ref|YP_001185772.1| diaminopimelate epimerase [Pseudomonas mendocina ymp]
gi|166225744|sp|A4XNX4.1|DAPF_PSEMY RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
gi|145573508|gb|ABP83040.1| diaminopimelate epimerase [Pseudomonas mendocina ymp]
Length = 276
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 172/290 (59%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D S + P+ A + DR+ G+G D ++ P + D+
Sbjct: 2 LLRFTKMHGLGNDFMVLD-LISQHAHVQPKHAKQWGDRHTGVGFDQLLIVEPPSHPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K++ V T +G+I +Q+DG+V V+
Sbjct: 61 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTTKKTIRVETKSGVIELRVQNDGQVCVN 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L+ + VP +Q+ + +DV+G + +SMGNPH V L+V
Sbjct: 120 MGAPRLEPAQVPF----QAEQAALTYRVDVEGQSVELAALSMGNPHAV---------LRV 166
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D ++ A + GPK EHH FP R N F++++ ++RVWERGAG T ACGTGACA
Sbjct: 167 DNVDSAPVHTLGPKLEHHPRFPQRVNVGFLQVLDRKHARLRVWERGAGETQACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + ++LPGG L IEW E V MTGPA V+ G V L
Sbjct: 227 AVAAIRQGWMDSPVQLELPGGKLSIEWAGEGQPVMMTGPAARVYEGQVRL 276
>gi|8247916|sp|O27389.2|DAPF_METTH RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase
Length = 286
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 167/293 (56%), Gaps = 18/293 (6%)
Query: 78 FLHFVKYHGLGNDFILVDN--RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTD 135
+ F K HGLGND++++D + PE ++C R F +GADGVIF P D
Sbjct: 1 MILFSKMHGLGNDYVVIDESAQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPASGEGD 60
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV- 193
RIFN+DGSE EMCGNG+RCF++F+ + + K+ V T AG+ E++ +DG V
Sbjct: 61 IRFRIFNADGSEAEMCGNGIRCFSKFVYD-NAIVRKRRLEVETLAGIKTVELEVEDGAVV 119
Query: 194 --KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
+VDMG K +P + ++ + L V+G +T +S+GNPH + F +
Sbjct: 120 SSRVDMGTATFKTDQIPMDV---EEYEFIDRFLPVEGEDIKLTALSVGNPHAIIF-VDDA 175
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
+ + +D+L GP E+H +FP R N FVE++SPS++ M WERGAG T+ACGTGA
Sbjct: 176 EGVDLDRL-----GPAIENHPLFPERINVHFVEVVSPSEIIMVTWERGAGPTMACGTGAT 230
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHV--YMTGPAEVVFYGSVL 362
A V+A V + V LPGG L I+ ++ + YM G A +VF G +L
Sbjct: 231 ASVIAGVKLEKLDDSVLVHLPGGELKIDVYQDGTELGAYMEGDAVMVFDGILL 283
>gi|421079849|ref|ZP_15540785.1| Diaminopimelate epimerase [Pectobacterium wasabiae CFBP 3304]
gi|401705336|gb|EJS95523.1| Diaminopimelate epimerase [Pectobacterium wasabiae CFBP 3304]
Length = 274
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 164/291 (56%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFAKMHGLGNDFMVVDA-VTQNVYFSPELIRRLADRHCGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIAVSTQTGRMVLSVTDDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + VP + +++++ + V C VSMGNPHCV ++
Sbjct: 119 GEPNFEPQQVPFRAVKAEKTYIMRAD------EHTVLCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A++ GP E H FP R N F++I+ +++RV+ERGAG T ACG+GACA
Sbjct: 164 VDDVETAKVETLGPLLESHERFPERANIGFMQIVDSQTVRLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G + V LPGG LDI+W + ++MTGPA V+ G + L
Sbjct: 224 AVAVGIQQGLLSAKVRVSLPGGELDIQWDGPGHPLFMTGPATHVYDGFIHL 274
>gi|399518948|ref|ZP_10759756.1| dapF [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399112772|emb|CCH36314.1| dapF [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 306
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/290 (42%), Positives = 170/290 (58%), Gaps = 19/290 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D S + P+ A + DR+ G+G D ++ P + D+
Sbjct: 32 LLRFTKMHGLGNDFMVLD-LISQHAHVQPKHAKQWGDRHVGVGFDQLLIVEPPSHPDVDF 90
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +Q+DG+V V+
Sbjct: 91 RYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTTKKVIRVETKSGIIELRVQNDGQVCVN 149
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L+ VP DQ+ + +DV+G + +SMGNPH V L+V
Sbjct: 150 MGAPRLQPEQVPF----QADQAALTYRVDVEGQSVELAVLSMGNPHAV---------LRV 196
Query: 257 DKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D ++ A + GPK EHH FP R N F++++ ++RVWERGAG T ACGTGACA
Sbjct: 197 DNVDDAPVHTLGPKLEHHPRFPQRVNVGFLQVLDRKHARLRVWERGAGETQACGTGACAA 256
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VAA+ +G + ++LPGG L IEW E V MTGPA V+ G + L
Sbjct: 257 AVAAIRQGWMDSPVQLELPGGKLSIEWAGEGQPVMMTGPAARVYEGQIRL 306
>gi|330993222|ref|ZP_08317159.1| Diaminopimelate epimerase [Gluconacetobacter sp. SXCC-1]
gi|329759773|gb|EGG76280.1| Diaminopimelate epimerase [Gluconacetobacter sp. SXCC-1]
Length = 274
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/281 (40%), Positives = 155/281 (55%), Gaps = 20/281 (7%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPG-VNGTDYTMR 139
F+K HGLGNDF++VD R +TP + A LCDR+ GIG D + P G D +R
Sbjct: 5 FLKMHGLGNDFVVVDERTHRH-DLTPARIAALCDRHTGIGCDQFVTLRPACAEGADVFVR 63
Query: 140 IFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
FN+DGSE CGN RC A +A +G+ + T AG++ + G V VDMG
Sbjct: 64 FFNADGSESGACGNASRCVADLVARE---SGRAQVGLQTRAGVLSATLVRPGVVTVDMGV 120
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P +DVP + +++ L + G + VSMGNPH F D +
Sbjct: 121 PAQGWADVPLA------EAMDTLHLPMAG---DPAAVSMGNPHATFFLPAP------DGM 165
Query: 260 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVL 319
+ GP+ EHH +FP R N F + S +++RVWERG+G T ACG+GACA VV AV
Sbjct: 166 DPCVAGPELEHHPLFPQRANIGFAHVTSRGSMRLRVWERGSGLTRACGSGACAAVVNAVR 225
Query: 320 EGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
G +R CTV++ GG L+I W+ +D HV MTGPA F G+
Sbjct: 226 RGLVDRTCTVEMDGGKLEITWRGDDGHVLMTGPATTSFTGT 266
>gi|407707440|ref|YP_006831025.1| protein crcB [Bacillus thuringiensis MC28]
gi|407385125|gb|AFU15626.1| Diaminopimelate epimerase [Bacillus thuringiensis MC28]
Length = 288
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 125/289 (43%), Positives = 164/289 (56%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQILEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L + F + T AG++ E+ +DG V
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFAIETLAGIVTAEVTVEDGVVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + V+ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTRAEIP--MLGEGETPFVRENFLFNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE N V M GPAEV+ G
Sbjct: 233 AVVAAILNGKLERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
>gi|423621996|ref|ZP_17597774.1| diaminopimelate epimerase [Bacillus cereus VD148]
gi|401262664|gb|EJR68805.1| diaminopimelate epimerase [Bacillus cereus VD148]
Length = 288
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 125/289 (43%), Positives = 164/289 (56%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQILEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L + F + T AG++ E+ +DG V
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFAIETLAGIVTAEVTVEDGVVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + V+ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTRAEIP--MLGEGETPFVRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE N V M GPAEV+ G
Sbjct: 233 AVVAAILNGKLERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
>gi|389842680|ref|YP_006344764.1| diaminopimelate epimerase [Cronobacter sakazakii ES15]
gi|387853156|gb|AFK01254.1| diaminopimelate epimerase [Cronobacter sakazakii ES15]
Length = 274
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 166/291 (57%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +P+ +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVFFSPDMIRRLADRHQGVGFDQLLVVEPPYDPDLDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKREIRVSTANGRMVLTVNEDELVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP+ + S VP + + ++++ + V C VSMGNPHCV ++
Sbjct: 119 GEPVFEPSLVPFRANKAEKTYIMRA------AEQTVLCGVVSMGNPHCV---------IQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD + A + GP E H FP R N F+++++ +++RV+ERGAG T ACG+GAC
Sbjct: 164 VDDVATAPVETLGPLMESHERFPERANIGFMQVMNTEHIRLRVFERGAGETQACGSGACG 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + +G + VDLPGG LDI WK N ++MTGPA V+ G + L
Sbjct: 224 AVAVGIQQGLLSAQVRVDLPGGRLDIAWKGPGNPLFMTGPATHVYDGFIHL 274
>gi|448239964|ref|YP_007404017.1| diaminopimelate epimerase [Serratia marcescens WW4]
gi|445210328|gb|AGE15998.1| diaminopimelate epimerase [Serratia marcescens WW4]
Length = 274
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 162/291 (55%), Gaps = 23/291 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDAV-TQNVYFSPELIRRLADRHLGVGFDQMLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTQTGRMVLSVTDDDLVCVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP VP + + ++++ + V C VSMGNPHCV L+
Sbjct: 119 GEPNFDPQAVPFRAAKAEKTYIMRA------AEHTVLCGVVSMGNPHCV---------LQ 163
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD +N A++ GP E H FP R N F++++S +K+RV+ERGAG T ACG+GACA
Sbjct: 164 VDDVNTAKVELLGPVLEGHERFPERANIGFMQVVSRDHIKLRVYERGAGETQACGSGACA 223
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V + + V+LPGG L I WK N ++MTGPA V+ G + L
Sbjct: 224 AVAVGIQQELLSEEVHVELPGGSLHIRWKGPGNPLFMTGPATHVYDGFIHL 274
>gi|162148089|ref|YP_001602550.1| diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5]
gi|161786666|emb|CAP56249.1| putative diaminopimelate epimerase [Gluconacetobacter
diazotrophicus PAl 5]
Length = 278
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 120/288 (41%), Positives = 158/288 (54%), Gaps = 29/288 (10%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGV-NGTDYTMR 139
F K HGLGNDF++VD R + +TP + A L DR+ GIG D + P +G D +R
Sbjct: 4 FHKMHGLGNDFVVVDER-AERYGLTPARIAALADRHRGIGCDQFVVLQPATRDGADVLVR 62
Query: 140 IFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
FN+DG+E CGN RC A + E G++ + T AGL+ + D G V VDMG
Sbjct: 63 FFNADGTEAGACGNASRCVAALLWRQE---GRRETVLQTRAGLLPARVDDAGVVTVDMGR 119
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P L DVP + +A+ L + G + SMGNPH F D L
Sbjct: 120 PALDWRDVPLARAADT------LHLPLAG---DPAAASMGNPHATFF--------LDDML 162
Query: 260 NLAEI--GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+L + GP EH +FP R N F + S ++L++RVWERG+G TLACG+GACA VV A
Sbjct: 163 DLDPVVAGPLLEHDPLFPERANIGFAHVRSRTELRLRVWERGSGLTLACGSGACAAVVNA 222
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDN-----HVYMTGPAEVVFYGS 360
V G ER CTV + GG L + W+ +D+ HV MTGPA V F G+
Sbjct: 223 VRRGLVERTCTVGMDGGALSVSWRAQDDPGEGGHVLMTGPATVSFVGT 270
>gi|423548210|ref|ZP_17524568.1| diaminopimelate epimerase [Bacillus cereus HuB5-5]
gi|401176239|gb|EJQ83435.1| diaminopimelate epimerase [Bacillus cereus HuB5-5]
Length = 288
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 164/289 (56%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQILEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDG---K 192
MR+FN+DGSE + CGNG+RC A++ E L + F + T AG++ E+ +DG
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFAIETLAGIVTAEVTVEDGVVTL 120
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
VK+DMG P L +++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 VKIDMGAPRLTRAEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ ++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDDEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE N V M GPAEV+ G
Sbjct: 233 AVVAAILNGKLERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
>gi|325579220|ref|ZP_08149176.1| diaminopimelate epimerase [Haemophilus parainfluenzae ATCC 33392]
gi|325159455|gb|EGC71589.1| diaminopimelate epimerase [Haemophilus parainfluenzae ATCC 33392]
Length = 285
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 178/292 (60%), Gaps = 17/292 (5%)
Query: 75 ESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-G 133
+ G + F K HGLGNDF++VD + TPE +L DR+ GIG D ++ P +
Sbjct: 8 KEGNMQFSKMHGLGNDFVVVDAV-TQNAYFTPETIKRLADRHRGIGFDQLLIVEPPYDPD 66
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKV 193
D+ RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V +++DG++
Sbjct: 67 LDFHYRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDIAVSTQKGKMVLTVKEDGQI 125
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEG 251
+V+MGEPI + + +P + + + ++++++ V C VSMGNPHCV
Sbjct: 126 RVNMGEPIWEPNKIPFTANKFEKNYILRTDVQT------VLCGAVSMGNPHCVV------ 173
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
Q ++ N+AE+GP E+H FP R N F+++++ + +K+RV+ERGAG T ACG+GAC
Sbjct: 174 QVDNIETANVAELGPLLENHERFPERVNAGFMQVVNRNHIKLRVYERGAGETQACGSGAC 233
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A +++G + + VDLPGG L IEW+ + +YMTG A ++ G++ L
Sbjct: 234 AAAAVGIMQGLLDNKVQVDLPGGSLLIEWEGVGSPLYMTGDATHIYDGNIHL 285
>gi|209542703|ref|YP_002274932.1| diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5]
gi|209530380|gb|ACI50317.1| Diaminopimelate epimerase [Gluconacetobacter diazotrophicus PAl 5]
Length = 279
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 120/288 (41%), Positives = 158/288 (54%), Gaps = 29/288 (10%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGV-NGTDYTMR 139
F K HGLGNDF++VD R + +TP + A L DR+ GIG D + P +G D +R
Sbjct: 5 FHKMHGLGNDFVVVDER-AERYGLTPARIAALADRHRGIGCDQFVVLQPATRDGADVLVR 63
Query: 140 IFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
FN+DG+E CGN RC A + E G++ + T AGL+ + D G V VDMG
Sbjct: 64 FFNADGTEAGACGNASRCVAALLWRQE---GRRETVLQTRAGLLPARVDDAGVVTVDMGR 120
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P L DVP + +A+ L + G + SMGNPH F D L
Sbjct: 121 PALDWRDVPLARAADT------LHLPLAG---DPAAASMGNPHATFF--------LDDML 163
Query: 260 NLAEI--GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+L + GP EH +FP R N F + S ++L++RVWERG+G TLACG+GACA VV A
Sbjct: 164 DLDPVVAGPLLEHDPLFPERANIGFAHVRSRTELRLRVWERGSGLTLACGSGACAAVVNA 223
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDN-----HVYMTGPAEVVFYGS 360
V G ER CTV + GG L + W+ +D+ HV MTGPA V F G+
Sbjct: 224 VRRGLVERTCTVGMDGGALSVSWRAQDDPGEGGHVLMTGPATVSFVGT 271
>gi|423218904|ref|ZP_17205400.1| diaminopimelate epimerase [Bacteroides caccae CL03T12C61]
gi|392626521|gb|EIY20567.1| diaminopimelate epimerase [Bacteroides caccae CL03T12C61]
Length = 287
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 161/288 (55%), Gaps = 32/288 (11%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAA-KLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K HG GND+I VD N P PE+ A + + GIG+DG+I + + D++
Sbjct: 22 IKFTKMHGAGNDYIYVDTTNY--PIAAPEKKAIEWSKFHTGIGSDGLIL-IGNSDKADFS 78
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK----V 193
MRIFN+DGSE MCGNG RC +++ E L K T+ T +G+ + ++ +GK V
Sbjct: 79 MRIFNADGSEAMMCGNGSRCVGKYVYEY-GLTDKTEITLDTLSGIKILKLHVEGKTVTAV 137
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG P L+ +V D + T VSMGNPH VTF
Sbjct: 138 TVDMGSP-LETGEVHFE----------------DKYPFRSTRVSMGNPHLVTFVDD---- 176
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ ++NL EIGP+ E+H +FP RTN EF +I+ ++MRVWERG+G T ACGTGACA
Sbjct: 177 --ITQINLPEIGPELENHHLFPDRTNVEFAQIVCKDTIRMRVWERGSGITQACGTGACAT 234
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VAA + R+ + + GG + IEW E H+ MTGPA VF G +
Sbjct: 235 AVAAFINELTGRKSDIIMDGGTVTIEWDEASGHILMTGPATKVFDGEI 282
>gi|330444896|ref|ZP_08308551.1| diaminopimelate epimerase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489206|dbj|GAA03048.1| diaminopimelate epimerase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 276
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 165/288 (57%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
++F K HGLGNDF++VD + +P+ +L DR+ GIG D ++ P + TD+
Sbjct: 3 INFSKMHGLGNDFVVVDCV-TQNVFFSPDAIRRLADRHRGIGFDQLLVVEPPYDPETDFH 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE E CGNG RCFARF++ ++ L K +V T AG ++ ++++D +V V+M
Sbjct: 62 YRIFNADGSEVEQCGNGARCFARFVS-MKGLTNKYHISVSTKAGKMILKLENDNQVTVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
G PI + + +P + ++++ + C SMGNPHCVT
Sbjct: 121 GVPIFEPNKIPMKAKQAEKTYILRAG------DQTLFCGAASMGNPHCVTVVDN------ 168
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
VD ++ +GP E H FP R N F++++ + +++RV+ERGAG T ACG+GACA V
Sbjct: 169 VDTADVDTLGPLLESHERFPERVNAGFMQVLDRNNVRLRVYERGAGETQACGSGACAAVA 228
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
L+G + V LPGG L I W E ++MTGPA VF G L
Sbjct: 229 IGRLQGLLDENVKVSLPGGDLHIRWAGEGKPLFMTGPAAHVFDGQFNL 276
>gi|423619342|ref|ZP_17595175.1| diaminopimelate epimerase [Bacillus cereus VD115]
gi|401251379|gb|EJR57657.1| diaminopimelate epimerase [Bacillus cereus VD115]
Length = 288
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 165/289 (57%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L + F + T AG++ E+ +DG V
Sbjct: 62 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETVFAIETLAGIVTAEVTVEDGVVTL 120
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + ++ + ++ T VSMGNPH V F
Sbjct: 121 AKIDMGAPRLTRAEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V+K L +GP E H +FP R N EF+EI++ +++ RVWERG+G T ACGTGACA
Sbjct: 176 ---VEKAPLTTLGPVLETHEMFPERVNVEFIEILNDAEMNFRVWERGSGVTQACGTGACA 232
Query: 313 VVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VVAA+L G ER TV L GG L I W EE N V M GPAEV+ G
Sbjct: 233 AVVAAILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 280
>gi|224585762|ref|YP_002639561.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224470290|gb|ACN48120.1| diaminopimelate epimerase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 275
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 162/289 (56%), Gaps = 17/289 (5%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
+ F K HGLGNDF++VD + +PE +L DR+ G+G + ++ P + D+
Sbjct: 1 MMQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLSDRHLGVGFEQLLVVEPPYDPELDF 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + +D V+V+
Sbjct: 60 HYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLSVTEDELVRVN 118
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNL 254
MGEP + + VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 MGEPNFEPAQVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVD 166
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
VD + +GP E H FP R N F++++ +++RV+ERGAG T ACG+GACA V
Sbjct: 167 NVDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRACGSGACAAV 226
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
+ +G V+LPGG LDI WK + +YMTGPA ++ G + L
Sbjct: 227 AVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL 275
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,912,941,555
Number of Sequences: 23463169
Number of extensions: 255875084
Number of successful extensions: 592937
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3251
Number of HSP's successfully gapped in prelim test: 384
Number of HSP's that attempted gapping in prelim test: 574543
Number of HSP's gapped (non-prelim): 3843
length of query: 364
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 220
effective length of database: 8,980,499,031
effective search space: 1975709786820
effective search space used: 1975709786820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)