BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017920
(364 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EJX|A Chain A, Crystal Structure Of Diaminopimelate Epimerase From
Arabidopsis Thaliana In Complex With Ll-Azidap
pdb|3EJX|B Chain B, Crystal Structure Of Diaminopimelate Epimerase From
Arabidopsis Thaliana In Complex With Ll-Azidap
pdb|3EJX|C Chain C, Crystal Structure Of Diaminopimelate Epimerase From
Arabidopsis Thaliana In Complex With Ll-Azidap
pdb|3EJX|D Chain D, Crystal Structure Of Diaminopimelate Epimerase From
Arabidopsis Thaliana In Complex With Ll-Azidap
pdb|3EJX|E Chain E, Crystal Structure Of Diaminopimelate Epimerase From
Arabidopsis Thaliana In Complex With Ll-Azidap
pdb|3EJX|F Chain F, Crystal Structure Of Diaminopimelate Epimerase From
Arabidopsis Thaliana In Complex With Ll-Azidap
pdb|3EKM|A Chain A, Crystal Structure Of Diaminopimelate Epimerase Form
Arabidopsis Thaliana In Complex With Irreversible
Inhibitor Dl-Azidap
pdb|3EKM|B Chain B, Crystal Structure Of Diaminopimelate Epimerase Form
Arabidopsis Thaliana In Complex With Irreversible
Inhibitor Dl-Azidap
pdb|3EKM|C Chain C, Crystal Structure Of Diaminopimelate Epimerase Form
Arabidopsis Thaliana In Complex With Irreversible
Inhibitor Dl-Azidap
pdb|3EKM|D Chain D, Crystal Structure Of Diaminopimelate Epimerase Form
Arabidopsis Thaliana In Complex With Irreversible
Inhibitor Dl-Azidap
pdb|3EKM|E Chain E, Crystal Structure Of Diaminopimelate Epimerase Form
Arabidopsis Thaliana In Complex With Irreversible
Inhibitor Dl-Azidap
pdb|3EKM|F Chain F, Crystal Structure Of Diaminopimelate Epimerase Form
Arabidopsis Thaliana In Complex With Irreversible
Inhibitor Dl-Azidap
Length = 317
Score = 502 bits (1293), Expect = e-142, Method: Compositional matrix adjust.
Identities = 236/312 (75%), Positives = 262/312 (83%), Gaps = 1/312 (0%)
Query: 52 SASSMSSIHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAK 111
+A+SM ++ A E S SFLD++E+G LHFVKYHGLGNDFILVDNR+S+EP+IT EQAAK
Sbjct: 1 AAASMDAVTA-EKFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAK 59
Query: 112 LCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGK 171
LCDRNFG+GADGVIFAMPGVNGTDY MRIFNSDGSEPEMCGNGVRCFARFIAELENL GK
Sbjct: 60 LCDRNFGVGADGVIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGK 119
Query: 172 QSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKW 231
SFT+HTGAGLIVPEIQDDG+VKVDMG PILKA DVPT LS NK ++VV++EL VDGV W
Sbjct: 120 HSFTIHTGAGLIVPEIQDDGQVKVDMGTPILKAQDVPTKLSGNKGEAVVEAELVVDGVSW 179
Query: 232 NVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQL 291
NVTCVSMGNPHC+TFG K G NLKVD LNL EIGPKFEHH +FPARTNTEFVE++S S L
Sbjct: 180 NVTCVSMGNPHCITFGKKGGPNLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHL 239
Query: 292 KMRVWERXXXXXXXXXXXXXXXXXXXXLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTG 351
KMRVWER LEG A+R+CTVDLPGGPL+IEWK+EDNH+YMTG
Sbjct: 240 KMRVWERGAGATLACGTGACALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTG 299
Query: 352 PAEVVFYGSVLL 363
PAE VFYGS LL
Sbjct: 300 PAEAVFYGSALL 311
>pdb|1GQZ|A Chain A, Refinement Of Haemophilus Influenzae Diaminopimelate
Epimerase At 1.7a
pdb|2GKE|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex
With An Irreversible Inhibitor Ll-Azidap
pdb|2GKJ|A Chain A, Crystal Structure Of Diaminopimelate Epimerase In Complex
With An Irreversible Inhibitor Dl-Azidap
Length = 274
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 154/288 (53%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
+ F K HGLGNDF++VD + TPE +L +R+ GIG D + I P D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ +V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXX 315
+ N+ ++GP E H FP R N F++II+ +K+RV+ER
Sbjct: 167 IQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 XXXLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
++G VDLPGG L IEW + +YMTG A ++ G + L
Sbjct: 227 VGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274
>pdb|1BWZ|A Chain A, Diaminopimelate Epimerase From Hemophilus Influenzae
Length = 274
Score = 177 bits (450), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 153/288 (53%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
+ F K HGLGNDF++VD + TPE +L +R+ GIG D + I P D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ +V T G +V ++D +++V+M
Sbjct: 60 YRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDISVSTQKGNMVLTVKDMNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXX 315
+ N+ ++GP E H FP R N F++II+ +K+RV+ER
Sbjct: 167 IQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 XXXLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
++G VDLPGG L IEW + +YMTG A ++ G + L
Sbjct: 227 VGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274
>pdb|2Q9J|A Chain A, Crystal Structure Of The C217s Mutant Of Diaminopimelate
Epimerase
Length = 274
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 153/288 (53%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
+ F K HGLGNDF++VD + TPE +L +R+ GIG D + I P D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE GNG RCFARF+ L+ L K+ +V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQXGNGARCFARFVT-LKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXX 315
+ N+ ++GP E H FP R N F++II+ +K+RV+ER
Sbjct: 167 IQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQASGSGACAAVA 226
Query: 316 XXXLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
++G VDLPGG L IEW + +YMTG A ++ G + L
Sbjct: 227 VGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274
>pdb|2Q9H|A Chain A, Crystal Structure Of The C73s Mutant Of Diaminopimelate
Epimerase
Length = 274
Score = 177 bits (449), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 153/288 (53%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGV-IFAMPGVNGTDYT 137
+ F K HGLGNDF++VD + TPE +L +R+ GIG D + I P D+
Sbjct: 1 MQFSKMHGLGNDFVVVDGV-TQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE GNG RCFARF+ L+ L K+ +V T G +V ++DD +++V+M
Sbjct: 60 YRIFNADGSEVSQSGNGARCFARFVT-LKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEPI + + +P + + + ++++++ V C VSMGNPHCV Q
Sbjct: 119 GEPIWEPAKIPFTANKFEKNYILRTDIQT------VLCGAVSMGNPHCVV------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXX 315
+ N+ ++GP E H FP R N F++II+ +K+RV+ER
Sbjct: 167 IQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVA 226
Query: 316 XXXLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
++G VDLPGG L IEW + +YMTG A ++ G + L
Sbjct: 227 VGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274
>pdb|4IJZ|A Chain A, Crystal Structure Of Diaminopimelate Epimerase From
Escherichia Coli
pdb|4IJZ|B Chain B, Crystal Structure Of Diaminopimelate Epimerase From
Escherichia Coli
Length = 280
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 147/286 (51%), Gaps = 17/286 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXX 315
VD + +GP E H FP R N F++++ +++RV+ER
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 XXXLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+G V+LPGG LDI WK + +YMTGPA V+ G +
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFI 272
>pdb|4IK0|A Chain A, Crystal Structure Of Diaminopimelate Epimerase Y268a
Mutant From Escherichia Coli
pdb|4IK0|B Chain B, Crystal Structure Of Diaminopimelate Epimerase Y268a
Mutant From Escherichia Coli
Length = 280
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 143/278 (51%), Gaps = 17/278 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
+ F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P + D+
Sbjct: 1 MQFSKMHGLGNDFMVVDA-VTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G +V + DD V+V+M
Sbjct: 60 YRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNM 118
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC--VSMGNPHCVTFGTKEGQNLK 255
GEP + S VP + + ++++ + + C VSMGNPHCV Q
Sbjct: 119 GEPNFEPSAVPFRANKAEKTYIMRA------AEQTILCGVVSMGNPHCVI------QVDD 166
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXXXXX 315
VD + +GP E H FP R N F++++ +++RV+ER
Sbjct: 167 VDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVA 226
Query: 316 XXXLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPA 353
+G V+LPGG LDI WK + +YMTGPA
Sbjct: 227 VGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPA 264
>pdb|2OTN|A Chain A, Crystal Structure Of The Catalytically Active Form Of
Diaminopimelate Epimerase From Bacillus Anthracis
pdb|2OTN|B Chain B, Crystal Structure Of The Catalytically Active Form Of
Diaminopimelate Epimerase From Bacillus Anthracis
Length = 308
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 148/289 (51%), Gaps = 24/289 (8%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AAKLCDRNFGIGADGVIFAMPGVNGTDY 136
F K HGLGN +I V N E +I E A K+ + N GIGADG+I P +
Sbjct: 26 FTKMHGLGNSYIYV---NMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPV 81
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FN+DGSE + CGNG+RC A++ E L FT+ T AG++ E+ ++GKV
Sbjct: 82 KMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEDTVFTIETLAGIVTAEVTVEEGKVTL 140
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
K+DMG P L +++P + + ++ + ++ T VSMGNPH V F
Sbjct: 141 AKIDMGAPRLTRAEIP--MLGEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDD--- 195
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERXXXXXXXXXXXXXX 312
V++ L +GP E H +FP R N EF+EI++ ++ RVWER
Sbjct: 196 ---VEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGVTQACGTGACA 252
Query: 313 XXXXXXLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
L G ER TV L GG L I W EE N V M GPAEV+ G
Sbjct: 253 AVVASILNGKMERGKEITVHLAGGDLMIAWTEEGN-VLMKGPAEVICRG 300
>pdb|3FVE|A Chain A, Crystal Structure Of Diaminopimelate Epimerase
Mycobacterium Tuberculosis Dapf
Length = 290
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 108/238 (45%), Gaps = 42/238 (17%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIF-------------- 126
F K HG NDF+L+ + ++ E +T + A LCDR G+GADGV+
Sbjct: 4 FAKGHGTQNDFVLLPDVDA-ELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLD 62
Query: 127 AMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVP 185
++P GV TD+ M N+DGS +MCGNGVR FA ++ L + F V + AG P
Sbjct: 63 SLPEGVRVTDWYMDYRNADGSAAQMCGNGVRVFAHYL-RASGLEVRDEFVVGSLAG---P 118
Query: 186 EIQDDGKVKVDMGEPI----LKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNP 241
P+ ++A+ S+ K + E V G +++ V +GNP
Sbjct: 119 -------------RPVTCHHVEAAYADVSVDMGKANRLGAGEAVVGGRRFHGLAVDVGNP 165
Query: 242 HCVTFGTKEGQNLKVDKLNLAEIG-PKFEHHSVFPARTNTEFVEIISPSQLKMRVWER 298
H ++ L VD L ++G P + FP N E + + MRV ER
Sbjct: 166 HLACVDSQ----LTVDGLAALDVGAPVSFDGAQFPDGVNVEVLTAPVDGAVWMRVHER 219
>pdb|3EDM|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3EDM|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3EDM|C Chain C, Crystal Structure Of A Short Chain Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3EDM|D Chain D, Crystal Structure Of A Short Chain Dehydrogenase From
Agrobacterium Tumefaciens
Length = 259
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 239 GNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRV 295
G P + + T +G + + E+GPK ++V P +T F + + +++ RV
Sbjct: 151 GGPGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFTKPEVRERV 207
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|D Chain D, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|F Chain F, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|H Chain H, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 766
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 89 NDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIF-NSDGSE 147
N+F+ +++ + EP++ ++ K+ N G A G+N Y+M + S G
Sbjct: 373 NNFMAINSADHNEPKLPKDKRLKIAIVNVGAPAG-------GINSAVYSMATYCMSQGHR 425
Query: 148 PEMCGNGVRCFARFIAELENLNGKQSFTVHT------GAGLIVPEIQDDGKV 193
P NG AR + +LN K + G + PE D G +
Sbjct: 426 PYAIYNGWSGLARH-ESVRSLNWKDMLGWQSRGGSEIGTNRVTPEEADLGMI 476
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,519,832
Number of Sequences: 62578
Number of extensions: 418005
Number of successful extensions: 849
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 788
Number of HSP's gapped (non-prelim): 13
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)