BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017920
(364 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LFG2|DAPF_ARATH Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana
GN=DAPF PE=1 SV=1
Length = 362
Score = 565 bits (1456), Expect = e-160, Method: Compositional matrix adjust.
Identities = 272/365 (74%), Positives = 302/365 (82%), Gaps = 5/365 (1%)
Query: 1 MAITTTRSLSVTPVTRR--SATPINPLRSSSLSYSLTRPFGSNLTLKVPSFRVSASSMSS 58
M I ++SV P +RR +A N SSLS+ F K PS RVSA++
Sbjct: 1 MEIAAVSTVSVAPQSRRVSNAFSRNLGSVSSLSFGF---FEKEYCFKSPSLRVSAAASMD 57
Query: 59 IHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFG 118
E S SFLD++E+G LHFVKYHGLGNDFILVDNR+S+EP+IT EQAAKLCDRNFG
Sbjct: 58 AVTAEKFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFG 117
Query: 119 IGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 178
+GADGVIFAMPGVNGTDY MRIFNSDGSEPEMCGNGVRCFARFIAELENL GK SFT+HT
Sbjct: 118 VGADGVIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHT 177
Query: 179 GAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSM 238
GAGLIVPEIQDDG+VKVDMG PILKA DVPT LS NK ++VV++EL VDGV WNVTCVSM
Sbjct: 178 GAGLIVPEIQDDGQVKVDMGTPILKAQDVPTKLSGNKGEAVVEAELVVDGVSWNVTCVSM 237
Query: 239 GNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWER 298
GNPHC+TFG K G NLKVD LNL EIGPKFEHH +FPARTNTEFVE++S S LKMRVWER
Sbjct: 238 GNPHCITFGKKGGPNLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWER 297
Query: 299 GAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFY 358
GAGATLACGTGACA+VVAAVLEG A+R+CTVDLPGGPL+IEWK+EDNH+YMTGPAE VFY
Sbjct: 298 GAGATLACGTGACALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFY 357
Query: 359 GSVLL 363
GS LL
Sbjct: 358 GSALL 362
>sp|Q2QNF7|DAPF_ORYSJ Diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp.
japonica GN=DAPF PE=2 SV=1
Length = 354
Score = 490 bits (1262), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/323 (73%), Positives = 277/323 (85%), Gaps = 3/323 (0%)
Query: 42 LTLK-VPSFRVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGLGNDFILVDNRNS 99
LTL+ P+ R ++M+ + P SA+ +FL+RRES LHFVKY GLGNDFI+VDNR+S
Sbjct: 32 LTLRGNPTARRCVAAMA-VSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMVDNRDS 90
Query: 100 TEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFA 159
P++TPE+AAKLCDRNFG+GADGVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFA
Sbjct: 91 AVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFA 150
Query: 160 RFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSV 219
RFIAELENL G SF +HTGAGLI+PEIQ+DGKVKVDMG+PIL D+PT L + K+++V
Sbjct: 151 RFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPILSGPDIPTKLPSTKNEAV 210
Query: 220 VKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTN 279
V+++L VDG W VTCVSMGNPHCVTFGTKE + L VD L L++IGPKFEHH +FPARTN
Sbjct: 211 VQADLAVDGSTWQVTCVSMGNPHCVTFGTKELKVLHVDDLKLSDIGPKFEHHEMFPARTN 270
Query: 280 TEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIE 339
TEFVE++S S LKMRVWERGAGATLACGTGACAVVVAAVLEG AER+C VDLPGGPL+IE
Sbjct: 271 TEFVEVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIE 330
Query: 340 WKEEDNHVYMTGPAEVVFYGSVL 362
W+E+DNH+YMTGPAE VFYGS +
Sbjct: 331 WREDDNHIYMTGPAEAVFYGSAV 353
>sp|A2ZLS4|DAPF_ORYSI Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa
subsp. indica GN=DAPF PE=3 SV=1
Length = 357
Score = 489 bits (1260), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/323 (73%), Positives = 277/323 (85%), Gaps = 3/323 (0%)
Query: 42 LTLK-VPSFRVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGLGNDFILVDNRNS 99
LTL+ P+ R ++M+ + P SA+ +FL+RRES LHFVKY GLGNDFI++DNR+S
Sbjct: 35 LTLRGNPTARRCVAAMA-VSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMMDNRDS 93
Query: 100 TEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFA 159
P++TPE+AAKLCDRNFG+GADGVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFA
Sbjct: 94 AVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFA 153
Query: 160 RFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSV 219
RFIAELENL G SF +HTGAGLI+PEIQ+DGKVKVDMG+PIL D+PT L + K+++V
Sbjct: 154 RFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPILSGPDIPTKLPSTKNEAV 213
Query: 220 VKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTN 279
V+++L VDG W VTCVSMGNPHCVTFGTKE + L VD L L++IGPKFEHH +FPARTN
Sbjct: 214 VQADLAVDGSTWQVTCVSMGNPHCVTFGTKELKVLHVDDLKLSDIGPKFEHHEMFPARTN 273
Query: 280 TEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIE 339
TEFVE++S S LKMRVWERGAGATLACGTGACAVVVAAVLEG AER+C VDLPGGPL+IE
Sbjct: 274 TEFVEVLSRSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAERKCVVDLPGGPLEIE 333
Query: 340 WKEEDNHVYMTGPAEVVFYGSVL 362
W+E+DNH+YMTGPAE VFYGS +
Sbjct: 334 WREDDNHIYMTGPAEAVFYGSAV 356
>sp|Q116P1|DAPF_TRIEI Diaminopimelate epimerase OS=Trichodesmium erythraeum (strain
IMS101) GN=dapF PE=1 SV=1
Length = 278
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/281 (67%), Positives = 222/281 (79%), Gaps = 8/281 (2%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F KYHGLGNDFIL+DNR+ +P +TPEQA +LCDRNFGIGADGVIFA+PGV TDYTMRI
Sbjct: 5 FTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPGVKQTDYTMRI 64
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 200
FNSDGSEPEMCGNG+RC A+FIAELEN N K + +HTGAG+IVPE+Q DG+V VDMG+P
Sbjct: 65 FNSDGSEPEMCGNGIRCLAKFIAELEN-NNKTKYNIHTGAGIIVPELQGDGQVTVDMGQP 123
Query: 201 ILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLN 260
L AS++PT+L AN D VV L+V G W VTCVSMGNPHC+TF V ++
Sbjct: 124 RLLASEIPTTL-ANADDKVVDQLLEVGGKSWFVTCVSMGNPHCITFVE------DVTAID 176
Query: 261 LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLE 320
LA+IGPKFEH+ VFP RTNTEF+++ISP +KMRVWERGAGATLACGTGACA VVA VL
Sbjct: 177 LAKIGPKFEHNPVFPERTNTEFIQVISPKYVKMRVWERGAGATLACGTGACASVVAGVLT 236
Query: 321 GHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+ ER TV+LPGG L+IEW D +YMTGPAE VF G +
Sbjct: 237 QNNERLVTVELPGGCLEIEWSTIDQKIYMTGPAEKVFTGII 277
>sp|P74667|DAPF_SYNY3 Diaminopimelate epimerase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=dapF PE=1 SV=1
Length = 279
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/282 (65%), Positives = 217/282 (76%), Gaps = 8/282 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KYHGLGNDFILVDNR STEP +TP+QA +LCDR+FGIGADGVIFA+PG GTDYTM
Sbjct: 3 LSFSKYHGLGNDFILVDNRQSTEPCLTPDQAQQLCDRHFGIGADGVIFALPGQGGTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
RIFNSDGSEPEMCGNG+RC A+F+A+LE + K ++ +HT AG+I P++ DG+VKVDMG
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAKFLADLEGVEEK-TYRIHTLAGVITPQLLADGQVKVDMG 121
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
EP L A +PT+L A + VV L V G W VTCVSMGNPHC+TF VD
Sbjct: 122 EPQLLAELIPTTL-APAGEKVVDLPLAVAGQTWAVTCVSMGNPHCLTFVD------DVDS 174
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
LNL EIGP FEHH F RTNTEF++++ +LKMRVWERGAG TLACGTGACA VVAAV
Sbjct: 175 LNLTEIGPLFEHHPQFSQRTNTEFIQVLGSDRLKMRVWERGAGITLACGTGACATVVAAV 234
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
L G +RRCTV+LPGG L+IEW +DN +YMTGPA+ VF G
Sbjct: 235 LTGRGDRRCTVELPGGNLEIEWSAQDNRLYMTGPAQRVFSGQ 276
>sp|Q8YVD0|DAPF2_NOSS1 Diaminopimelate epimerase 2 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=dapF2 PE=1 SV=2
Length = 279
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/284 (62%), Positives = 217/284 (76%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR S P ITPE+A ++CDR+FGIGADGVIFA+PG NGTDYTM
Sbjct: 3 IEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGENGTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A F+A+LE L+ K ++ +HT AG+I P++ DG++KVDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNKDTYRIHTLAGVITPQLTPDGQIKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+L A D V+ L+V+G W VTCVSMGNPHC+TF V
Sbjct: 123 GLPRLLAGEIPTTLGA-ADGKVINQPLEVEGQTWEVTCVSMGNPHCITFVE------DVA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L IGPKFEHH FP RTNTEF++++S LKMRVWERGAG TLACGTGACA +VAA
Sbjct: 176 AIPLEIIGPKFEHHPAFPQRTNTEFIQVVSRDYLKMRVWERGAGITLACGTGACASLVAA 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL G ++R TV+LPGGPL+IEW E D +YMTGPA+ VF G +
Sbjct: 236 VLTGRSDRLATVELPGGPLEIEWSEVDQRIYMTGPADRVFTGKL 279
>sp|B1XP39|DAPF_SYNP2 Diaminopimelate epimerase OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=dapF PE=1 SV=1
Length = 281
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/286 (62%), Positives = 209/286 (73%), Gaps = 8/286 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KY GLGNDFIL+DNR T P +TPEQA +LCDR+FGIGADGVIFA+PG G DYTM
Sbjct: 3 LEFTKYQGLGNDFILLDNRQQTTPLVTPEQAIQLCDRHFGIGADGVIFALPGQAGADYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGK-QSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC ARFI LE N +++++HT AG+I P ++ D V+VDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLARFIDHLEGGNAPGKTYSIHTLAGMIRPRLETDALVRVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
GEPIL A+D+PT+L + Q+V L+V G W VTCVSMGNPHC+TF V
Sbjct: 123 GEPILTATDIPTTLKDSNGQAV-NQPLEVAGKTWMVTCVSMGNPHCITFVED------VA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L IG FEHH FP R NTEF+E++ P +KMRVWERGAG TLACGTGACA VVA
Sbjct: 176 AIALEVIGKDFEHHPAFPQRINTEFIEVVRPDYIKMRVWERGAGITLACGTGACASVVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VL GH +R CTV+LPGG L IEW DNH+YMTGPA + F G V L
Sbjct: 236 VLTGHCDRLCTVELPGGCLQIEWSAADNHIYMTGPAAISFQGQVTL 281
>sp|Q5N013|DAPF_SYNP6 Diaminopimelate epimerase OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=dapF PE=1 SV=1
Length = 280
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/286 (63%), Positives = 220/286 (76%), Gaps = 11/286 (3%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KYHGLGNDFILVDNR S EPR+TPEQA ++CDRNFG+GADGVIFA+PG +DY M
Sbjct: 3 LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPGSGDSDYVM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQS-FTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A+F++EL+ G QS + + TGAGLIVP + + G V VDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAKFLSELD--GGAQSRYRIATGAGLIVPTLTETGLVTVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G LK ++PT+L+ D+ VV+++L+V W VT VSMGNPHC+TF V
Sbjct: 121 GPAYLKPVEIPTTLTGTGDR-VVEADLEVGDRPWKVTTVSMGNPHCITFVE------DVA 173
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ LAEIGP FEHH VFP RTNTEFVE++ P LKMRVWERGAGATLACGTGACA +VAA
Sbjct: 174 AVPLAEIGPLFEHHPVFPQRTNTEFVEVVRPDYLKMRVWERGAGATLACGTGACATLVAA 233
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VL G ++R+ TV+LPGGPL IEW+ ED H++MTGPA VF GS+ L
Sbjct: 234 VLTGRSDRQATVELPGGPLQIEWR-EDGHLFMTGPAVKVFSGSMEL 278
>sp|Q31LW2|DAPF_SYNE7 Diaminopimelate epimerase OS=Synechococcus elongatus (strain PCC
7942) GN=dapF PE=1 SV=1
Length = 280
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/286 (63%), Positives = 220/286 (76%), Gaps = 11/286 (3%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KYHGLGNDFILVDNR S EPR+TPEQA ++CDRNFG+GADGVIFA+PG +DY M
Sbjct: 3 LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPGSGDSDYVM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQS-FTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A+F++EL+ G QS + + TGAGLIVP + + G V VDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAKFLSELD--GGAQSRYRIATGAGLIVPTLTETGLVTVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G LK ++PT+L+ D+ VV+++L+V W VT VSMGNPHC+TF V
Sbjct: 121 GPAYLKPVEIPTTLTGTGDR-VVEADLEVGDRPWKVTTVSMGNPHCITFVE------DVA 173
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ LAEIGP FEHH VFP RTNTEFVE++ P LKMRVWERGAGATLACGTGACA +VAA
Sbjct: 174 AVPLAEIGPLFEHHPVFPQRTNTEFVEVVRPDYLKMRVWERGAGATLACGTGACATLVAA 233
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VL G ++R+ TV+LPGGPL IEW+ ED H++MTGPA VF GS+ L
Sbjct: 234 VLTGRSDRQATVELPGGPLQIEWR-EDGHLFMTGPAVKVFSGSMEL 278
>sp|B2J3A7|DAPF_NOSP7 Diaminopimelate epimerase OS=Nostoc punctiforme (strain ATCC 29133
/ PCC 73102) GN=dapF PE=1 SV=1
Length = 279
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/284 (61%), Positives = 211/284 (74%), Gaps = 8/284 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+S+ P +TPEQA +LCDR+FGIGADGVIFA+PG NGTDYTM
Sbjct: 3 IEFTKYHGLGNDFILIDNRSSSLPVLTPEQAIQLCDRHFGIGADGVIFALPGENGTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEPEMCGNG+RC A F+A+LE + K S+ +HT G++ P++ DG VKVDM
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAGFLADLEGQSRNKDSYRIHTLGGVMTPQLLSDGLVKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+L A ++ V+ L+V G W VTCV+MGNPHC+TF V
Sbjct: 123 GLPRLLAGEIPTTL-APVEEKVISVPLEVAGKTWEVTCVNMGNPHCITFVE------DVA 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ L IGPKFEHH FP R NTEF++++ LKMRVWERGAG TLACGTGACA +VA
Sbjct: 176 AIELESIGPKFEHHPAFPQRINTEFIQVVRRDYLKMRVWERGAGITLACGTGACASLVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VL G +R TV+LPGGPL IEW E D VYMTGPAE VF G +
Sbjct: 236 VLTGKCDRTATVELPGGPLQIEWSEIDQRVYMTGPAERVFTGKL 279
>sp|B0JJ58|DAPF_MICAN Diaminopimelate epimerase OS=Microcystis aeruginosa (strain
NIES-843) GN=dapF PE=1 SV=1
Length = 281
Score = 362 bits (929), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 175/280 (62%), Positives = 209/280 (74%), Gaps = 8/280 (2%)
Query: 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140
F KY GLGNDFIL+DNR+S EP IT E A +CDR+FGIGADGVIFA+PG TDYTMRI
Sbjct: 5 FTKYQGLGNDFILIDNRHSPEPLITAEMAVAMCDRHFGIGADGVIFALPGQAETDYTMRI 64
Query: 141 FNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDMGE 199
FNSDGSEPEMCGNG+RC A+FIA LE N +++ +HT AG I+P ++ + +V VDMG
Sbjct: 65 FNSDGSEPEMCGNGIRCLAQFIARLEANNAIGRTYRIHTLAGTIIPRLEANEQVTVDMGP 124
Query: 200 PILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKL 259
P L S++PT+L ++ V+ L+V+G W VTCVSMGNPHCVTF + +
Sbjct: 125 PQLLGSEIPTTLVKGSEK-VLAVPLEVEGKDWLVTCVSMGNPHCVTFVGD------LASI 177
Query: 260 NLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVL 319
L IGPKFEHH VFP RTN EFVE+I+P +KMRVWERGAG TLACGTGACAVVVAA+L
Sbjct: 178 PLETIGPKFEHHPVFPQRTNVEFVEVIAPDYMKMRVWERGAGITLACGTGACAVVVAALL 237
Query: 320 EGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
G +RRCTV+LPGG L I W + DN VYMTGPA+ VF G
Sbjct: 238 TGKCDRRCTVELPGGCLQIHWSQTDNRVYMTGPAKAVFEG 277
>sp|B7KH06|DAPF_CYAP7 Diaminopimelate epimerase OS=Cyanothece sp. (strain PCC 7424)
GN=dapF PE=1 SV=1
Length = 281
Score = 358 bits (920), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 170/283 (60%), Positives = 208/283 (73%), Gaps = 10/283 (3%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KYHGLGNDFIL+DNR+ +EP ++PE A ++CDR+FGIGADGVIF +PG + TDY M
Sbjct: 3 IEFTKYHGLGNDFILIDNRHGSEPMVSPEMAVEMCDRHFGIGADGVIFVLPGTSQTDYQM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLN--GKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSEPEMCGNG+RC A+FIAELE GK S+ + T GL+ P ++ +V VD
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAQFIAELEKTTEVGK-SYRIDTLGGLMTPRLEAQEQVTVD 121
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L S++PT+L ++ + V+ ++V G W VTCVSMGNPHC+TF V
Sbjct: 122 MGLPRLLGSEIPTTL-VSRTEKVIDQPIEVAGQSWLVTCVSMGNPHCITFVED------V 174
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
+ L IGP+FEHH FP RTNTEF+E++ P LKMRVWERGAG TLACGTGACA VVA
Sbjct: 175 KSIALETIGPQFEHHVAFPQRTNTEFIEVLRPDYLKMRVWERGAGITLACGTGACASVVA 234
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VL G ++RRCTV+LPGG L I W E D HVYMTGPA+ VF G
Sbjct: 235 GVLTGKSDRRCTVELPGGCLSIYWSETDGHVYMTGPAKRVFTG 277
>sp|B7K1E7|DAPF_CYAP8 Diaminopimelate epimerase OS=Cyanothece sp. (strain PCC 8801)
GN=dapF PE=1 SV=1
Length = 281
Score = 353 bits (906), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 169/282 (59%), Positives = 207/282 (73%), Gaps = 8/282 (2%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KY GLGNDFIL+DNR+S P ++PEQA K+CDR+FGIGADGVIF +PG TDYTM
Sbjct: 3 IEFSKYQGLGNDFILIDNRSSHTPLVSPEQAIKMCDRHFGIGADGVIFVLPGTANTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFNSDGSEP+MCGNG+RC ARFIA LE +++ + T AG+I P ++ G+VKVDM
Sbjct: 63 RIFNSDGSEPQMCGNGIRCLARFIAHLEGGETLGKTYQIDTLAGVISPRLEAQGQVKVDM 122
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L A ++PT+L N + V+ L+V G W VTCVSMGNPHC+TF K+ V
Sbjct: 123 GTPYLLAKEIPTTL-GNSNDKVINHSLEVAGQTWLVTCVSMGNPHCITF-VKD-----VW 175
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
++L +GP+FEHH FP RTNTEF+E++ +KMRVWERGAG TLACGTGACA VVA
Sbjct: 176 GIDLPTLGPQFEHHPGFPERTNTEFIEVVRRDYVKMRVWERGAGITLACGTGACASVVAG 235
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VL +R C V+LPGG L IEW E DN +YMTGPAE+VF G
Sbjct: 236 VLTNQCDRYCIVELPGGNLTIEWSEMDNRIYMTGPAELVFTG 277
>sp|B0C312|DAPF_ACAM1 Diaminopimelate epimerase OS=Acaryochloris marina (strain MBIC
11017) GN=dapF PE=1 SV=1
Length = 283
Score = 352 bits (902), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 165/283 (58%), Positives = 202/283 (71%), Gaps = 9/283 (3%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F KY GLGNDFIL+DNR+ +P +TP+QA ++CDRNFGIG DGVIFA+P TDYTM
Sbjct: 3 VEFTKYQGLGNDFILIDNRHQAQPCLTPDQAVQMCDRNFGIGGDGVIFALPPEGDTDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELEN--LNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RI+NSDGSEPEMCGNG+RC ARF+A LE L ++ +HT AG I P +Q DG VKVD
Sbjct: 63 RIYNSDGSEPEMCGNGIRCLARFLAHLEGKPLQTDITYRIHTLAGTITPSLQADGLVKVD 122
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L ++PT+L D VV L+V G W VTCVSMGNPHC+TF +
Sbjct: 123 MGPPFLVPQEIPTTLGEGTD-PVVNQPLEVAGQSWPVTCVSMGNPHCITFVD------DL 175
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
+ ++ +GP+FEHH VFP R NTEF+++I P LKM VWERGAG TLACGTGACAV+VA
Sbjct: 176 EAIDFQTLGPQFEHHPVFPQRINTEFIQVIRPDYLKMLVWERGAGPTLACGTGACAVLVA 235
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VL G ++ + T++LPGGPL I W E V+MTGPAE VF G
Sbjct: 236 GVLTGKSQSQATIELPGGPLQIRWAGEGQSVFMTGPAEKVFTG 278
>sp|B8HU20|DAPF_CYAP4 Diaminopimelate epimerase OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=dapF PE=1 SV=1
Length = 280
Score = 339 bits (869), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 202/283 (71%), Gaps = 9/283 (3%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KY GLGNDFIL+DNRN P +TPEQA +CDR+FG+GADGVIF +P TDYTM
Sbjct: 3 LQFTKYQGLGNDFILIDNRNEATPLLTPEQAVDICDRHFGVGADGVIFLLPATGETDYTM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELEN--LNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFNSDGSEPEMCGNG+RC ARF A+LE L + +HT AG I P+++ DG+V VD
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLARFAADLEGHALTATPRYRIHTLAGTITPQVRSDGQVTVD 122
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG+P L A ++PT+L ++ V+ L V G W+VTCVSMGNPHC+TF V
Sbjct: 123 MGQPRLLAGEIPTTLKPAAEK-VIAQPLQVGGRSWSVTCVSMGNPHCITFVE------NV 175
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
++L +GP+FEHH FP R NTEF+E+I P LKMRVWERGAG TLACGTGACA +VA
Sbjct: 176 AAIDLHTLGPQFEHHPAFPQRINTEFIEVIRPDYLKMRVWERGAGMTLACGTGACAALVA 235
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
AVL +E R TV+LPGGPL+IEW V MTGPAE VF G
Sbjct: 236 AVLNDLSEPRATVELPGGPLEIEWSAPGQAVLMTGPAEQVFQG 278
>sp|Q2JLR0|DAPF_SYNJB Diaminopimelate epimerase OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=dapF PE=1 SV=1
Length = 285
Score = 337 bits (864), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 163/282 (57%), Positives = 208/282 (73%), Gaps = 4/282 (1%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KY GLGNDFILVDNR ++P ++PE+A LC+R FG+GADGVIF +PG G D++M
Sbjct: 5 LSFHKYQGLGNDFILVDNRWQSQPCLSPEEAVALCNRRFGVGADGVIFLLPGQEGADFSM 64
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
R+FNSDGSE EMCGNG+RC ARF+ +L ++ +HT AG IVP+++ DG V VDMG
Sbjct: 65 RLFNSDGSEAEMCGNGIRCLARFLQDLGIPGRDGAYQIHTLAGRIVPQVRADGLVTVDMG 124
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
P L A +PT+L D+ V++ L V G +W VT VSMGNPHCV F + +++
Sbjct: 125 IPRLLAKQIPTTL-VEPDEKVIRQPLAVAGREWRVTAVSMGNPHCVVFLEE---EGSLEE 180
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
L+LA +GP FEHH FP RTNTEFV+++SP++L++RVWERGAGATLACGTGACAV+VAAV
Sbjct: 181 LDLAAVGPLFEHHPAFPERTNTEFVQVLSPTRLRLRVWERGAGATLACGTGACAVLVAAV 240
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
LE AE + TV+LPGG L+I W HV+MTGPA VF G+
Sbjct: 241 LEERAESQATVELPGGNLEIRWDPSTQHVWMTGPALHVFSGT 282
>sp|Q8DGM2|DAPF_THEEB Diaminopimelate epimerase OS=Thermosynechococcus elongatus (strain
BP-1) GN=dapF PE=1 SV=1
Length = 286
Score = 325 bits (834), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 161/290 (55%), Positives = 201/290 (69%), Gaps = 14/290 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KY GLGNDF+L+DNR+ E +TPEQA CDR+FG+GADGVIF + G +DY M
Sbjct: 3 LSFQKYQGLGNDFLLIDNRHQEELLLTPEQAQFWCDRHFGVGADGVIFLLRGTGESDYRM 62
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ--SFTVHTGAGLIVPEIQDDGKVKVD 196
R++N+DGS +MCGNG+RC A+FI LE + + + + T AGLIVPE+Q DG+V VD
Sbjct: 63 RMYNADGSVAQMCGNGIRCLAKFIFALEGRSAGEIVRYRIDTLAGLIVPEVQADGQVTVD 122
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG+P L A +PT+L+A DQ VV L V +W VTCVSMGNPHCVTF V
Sbjct: 123 MGKPRLLAQQIPTTLAA-ADQKVVDVPLTVGDRQWLVTCVSMGNPHCVTFVE------DV 175
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
L+LA +GP+FEHH FP RTNTEFV+++ +L+MRVWERGAG TLACGTGACA +VA
Sbjct: 176 AALDLAVLGPQFEHHPAFPQRTNTEFVQVLGSDRLRMRVWERGAGMTLACGTGACATLVA 235
Query: 317 AVLEGHA-----ERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
AVL G + + TV+LPGG L I W H+YMTGPA VF G++
Sbjct: 236 AVLTGCLSPGGDQAQATVELPGGDLQIRWDLPSQHLYMTGPALAVFSGTL 285
>sp|Q2JUV6|DAPF_SYNJA Diaminopimelate epimerase OS=Synechococcus sp. (strain JA-3-3Ab)
GN=dapF PE=1 SV=1
Length = 285
Score = 321 bits (823), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 163/282 (57%), Positives = 207/282 (73%), Gaps = 4/282 (1%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F KY GLGNDFILVDNR+ +P +TPE+A LC+R FG+GADGVIF +PG G D++M
Sbjct: 5 LSFHKYQGLGNDFILVDNRHQPQPCLTPEEAVALCNRRFGVGADGVIFLLPGQEGADFSM 64
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG 198
R+FNSDGSE EMCGNG+RC ARF+ +L ++ +HT AG IVP+++ DG V VDMG
Sbjct: 65 RLFNSDGSEAEMCGNGIRCLARFLQDLGIPGQDGAYQIHTLAGRIVPQVRPDGLVTVDMG 124
Query: 199 EPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDK 258
P L A +PT+L A ++ VV+ L V G +W VT VSMGNPHCV F +EG +L ++
Sbjct: 125 IPRLLAGQIPTTL-AKPEEKVVRQPLQVGGREWAVTAVSMGNPHCVVF-LEEGGSL--EE 180
Query: 259 LNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAV 318
L+L +GP FEHH FP RTNTEF +++ P+ L++RVWERGAG TLACGTGACA +VAAV
Sbjct: 181 LDLERVGPLFEHHPAFPERTNTEFAQVLGPNYLRLRVWERGAGVTLACGTGACAALVAAV 240
Query: 319 LEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
LE AE + TV+LPGG L+I W + HV+MTGPA VF G+
Sbjct: 241 LEERAEPQATVELPGGNLEIRWDPDTQHVWMTGPALPVFSGT 282
>sp|A3DK16|DAPF_CLOTH Diaminopimelate epimerase OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=dapF PE=1 SV=1
Length = 280
Score = 283 bits (725), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 152/291 (52%), Positives = 193/291 (66%), Gaps = 18/291 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HGLGND+I V+ T + E A K+ DR+FGIG+DG++ MP D+ M
Sbjct: 1 MRFTKMHGLGNDYIYVNCFEETVENPS-EVAKKVSDRHFGIGSDGLVLIMPS-ERADFKM 58
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGK---VK 194
R+FNSDGSE EMCGN +RC +++ + + K V T AG+ V E+ DGK VK
Sbjct: 59 RMFNSDGSEAEMCGNAIRCVGKYVFD-RGMTNKNVIRVETLAGIKVLELTVQDGKAKLVK 117
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSE-LDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMGEPILK ++P N D+ + ++E +++DG ++ VTCVSMGNPH V++
Sbjct: 118 VDMGEPILKPENIPV----NSDKEIFRTEPVEIDGKEFKVTCVSMGNPHAVSYVKN---- 169
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
VD L +IGPK EHH +FP R N EFVE+I + LKMRVWERGAG TLACGTGACAV
Sbjct: 170 --VDIFPLEKIGPKMEHHPLFPKRINAEFVEVIDRTTLKMRVWERGAGETLACGTGACAV 227
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
+VA+VL G +ER+ TV L GG L IEW E +NHVYMTGPA VF G V LN
Sbjct: 228 LVASVLNGVSERKATVKLLGGDLIIEWNENNNHVYMTGPAVKVFEGEVDLN 278
>sp|B8FSD4|DAPF_DESHD Diaminopimelate epimerase OS=Desulfitobacterium hafniense (strain
DCB-2 / DSM 10664) GN=dapF PE=1 SV=1
Length = 283
Score = 279 bits (713), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 148/290 (51%), Positives = 183/290 (63%), Gaps = 18/290 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI--TPEQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ VK HGLGNDF+ +D+ + PE A KLC R FG+G DG+I +P + D
Sbjct: 1 MEIVKMHGLGNDFVFIDHFQGAPAELPDYPELARKLCHRQFGVGGDGLIMVLPS-DKADA 59
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---- 192
MRI NSDGSEPEMCGNG+RCFAR+I + + + V T AG++ ++ G
Sbjct: 60 RMRILNSDGSEPEMCGNGIRCFARYIYD-QGYVSQNPLQVETLAGILTLQLSITGDQVTG 118
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V+VDMGEPILK+ VP + + VV + LDVDG ++ T VSMGNPHCV F
Sbjct: 119 VRVDMGEPILKSEQVPVLIQGD---PVVGARLDVDGQEFEFTAVSMGNPHCVLFVED--- 172
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
+ L+ IGP E H +FP +TN EF+ + SP +L M+VWERGAG TLACGTGACA
Sbjct: 173 ---YETLDFERIGPAIEKHPLFPRKTNVEFIIVNSPRELTMKVWERGAGPTLACGTGACA 229
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVL 362
VVAAVL G ER+ TV LPGG L IEW EDN VYMTGPA VF G +L
Sbjct: 230 SVVAAVLNGRTERKVTVHLPGGDLLIEWG-EDNRVYMTGPAAYVFKGVLL 278
>sp|B0TGR9|DAPF_HELMI Diaminopimelate epimerase OS=Heliobacterium modesticaldum (strain
ATCC 51547 / Ice1) GN=dapF PE=1 SV=1
Length = 281
Score = 272 bits (696), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 145/295 (49%), Positives = 186/295 (63%), Gaps = 24/295 (8%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT-----PEQAAKLCDRNFGIGADGVIFAMPGVNG 133
+ FVK HGLGNDFI+V N+ EP + E A ++CDR++GIG DG+I P +
Sbjct: 1 MEFVKMHGLGNDFIVV---NAMEPPLLDREDWEEIAVRICDRHYGIGGDGLILLFPS-DK 56
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK- 192
D RI NSDGSEPEMCGNG+RC AR++ E + K+ V T AG+IVPEI D
Sbjct: 57 ADIRWRILNSDGSEPEMCGNGIRCLARYVYE-RGIVAKRRIEVETLAGIIVPEIITDAAG 115
Query: 193 ----VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGT 248
V VDMGEP L+ +P + V EL V VT +SMGNPHC+ +
Sbjct: 116 AVTGVCVDMGEPRLQRHQIPM---VGPEGPAVNQELVVGDAVVRVTALSMGNPHCLIYVN 172
Query: 249 KEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
+D+ + +GPK E H FPA+TN EFV++++P +++MRVWERGAG TLACGT
Sbjct: 173 D------IDEAPVTTLGPKVEVHPAFPAKTNVEFVQVVAPDEVQMRVWERGAGPTLACGT 226
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
GACA VV +VL G+ +R+ TV L GGPL IEW+EE+N VYMTGPA VF G + L
Sbjct: 227 GACATVVGSVLNGYTDRKVTVHLAGGPLHIEWREENNRVYMTGPAVEVFRGELPL 281
>sp|A6VFK8|DAPF_METM7 Diaminopimelate epimerase OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=dapF PE=1 SV=1
Length = 277
Score = 272 bits (695), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 142/289 (49%), Positives = 188/289 (65%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAAKLC-DRNFGIGADGVIFAMPGVNGTDY 136
+ F K HGLGND+I VD +T +I P + ++ DR+FGIG+DG++ +P D+
Sbjct: 1 MKFTKMHGLGNDYIYVD---ATSQKIENPNEISRFVSDRHFGIGSDGLVLILPS-EIADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE--IQDDG--K 192
MR+FNSDGSE EMCGN +RC +F+ + + + K + T+ T AG+ V E +++D
Sbjct: 57 KMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTITIETLAGIKVLEMTVENDKVVL 115
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
VKVDMGEPILKA +P ++ V+ E+ +N TCVSMGNPH +T+
Sbjct: 116 VKVDMGEPILKAETIPV---LSEKHPVIDEEITAKDYCYNFTCVSMGNPHAITYIEN--- 169
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V + L +IGP FE H FP +TN EFVE+I S +KMRVWERGAG TLACGTGACA
Sbjct: 170 ---VSEFPLEKIGPLFEFHEKFPRKTNVEFVELIDDSTIKMRVWERGAGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V+VA+VL+G+ R+ TV L GG L IEW E DNH+YMTGPA VF G +
Sbjct: 227 VLVASVLKGYVGRKATVKLLGGDLTIEWNESDNHIYMTGPATTVFEGEI 275
>sp|A4FXV0|DAPF_METM5 Diaminopimelate epimerase OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=dapF PE=1 SV=1
Length = 277
Score = 270 bits (691), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 141/289 (48%), Positives = 190/289 (65%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAAKLC-DRNFGIGADGVIFAMPGVNGTDY 136
+ F K HGLGND+I VD + +I P + +K DR+FGIG+DG++ +P + D+
Sbjct: 1 MKFTKMHGLGNDYIYVD---AISQKIENPNEISKFVSDRHFGIGSDGLVLILPS-DVADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FNSDGSE EMCGN +RC +F+ + + + K + ++ T AG+ V E+ ++GKV
Sbjct: 57 KMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTISIETLAGIKVLEMTVENGKVVL 115
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
KVDMGEPILKA +P ++ V+ E+ +N TCVSMGNPH +T+
Sbjct: 116 VKVDMGEPILKAETIPV---LSEKHPVIDEEITAKDYCYNFTCVSMGNPHAITYIEN--- 169
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V++ L +IGP FE H FP +TN EFVE+I S +KMRVWERGAG TLACGTGACA
Sbjct: 170 ---VEEFPLEKIGPLFEVHEKFPKKTNVEFVELIDDSTVKMRVWERGAGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V+ A+VL+G+ R+ TV L GG L IEW E+DNH+YMTGPA VF G +
Sbjct: 227 VLTASVLKGYVGRKATVKLLGGDLIIEWNEKDNHIYMTGPATTVFEGEI 275
>sp|Q6LYS1|DAPF_METMP Diaminopimelate epimerase OS=Methanococcus maripaludis (strain S2 /
LL) GN=dapF PE=1 SV=1
Length = 277
Score = 270 bits (689), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 141/289 (48%), Positives = 189/289 (65%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAAKLC-DRNFGIGADGVIFAMPGVNGTDY 136
+ F K HGLGND+I VD + +I P + +K DR+FGIG+DG++ +P + D+
Sbjct: 1 MKFTKMHGLGNDYIYVD---AISQKIENPNEISKFVSDRHFGIGSDGLVLILPS-DVADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV-- 193
MR+FNSDGSE EMCGN +RC +F+ + + + K + T+ T AG+ V E+ ++GKV
Sbjct: 57 KMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTITIETLAGIKVLEMTIENGKVVL 115
Query: 194 -KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
KVDMGEPILKA ++P ++ V+ E+ +N TCVSMGNPH +T+
Sbjct: 116 VKVDMGEPILKAEEIPV---LSEKHPVIDEEITAKDYCYNFTCVSMGNPHAITYIEN--- 169
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD+ L +IGP FE H FP +TN EFVE+I + +KMRVWERGAG TLACGTGACA
Sbjct: 170 ---VDEFPLEKIGPLFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V+ A+VL+G+ R+ TV L GG L IEW E D H+YMTGPA VF G +
Sbjct: 227 VLTASVLKGYVGRKATVKLLGGDLTIEWNEFDKHIYMTGPATTVFEGEI 275
>sp|A9AB27|DAPF_METM6 Diaminopimelate epimerase OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=dapF PE=1 SV=1
Length = 277
Score = 269 bits (687), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 141/289 (48%), Positives = 189/289 (65%), Gaps = 20/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAAKLC-DRNFGIGADGVIFAMPGVNGTDY 136
+ F K HGLGND+I VD + +I P + ++ DR+FGIG+DG++ +P + D+
Sbjct: 1 MKFTKMHGLGNDYIYVD---AISQKIENPNEISRFVSDRHFGIGSDGLVLILPS-DLADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPE--IQDDG--K 192
MR+FNSDGSE EMCGN +RC +F+ + + + K + T+ T AG+ V E I++D
Sbjct: 57 KMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTITIETLAGIKVLEMTIENDKVVL 115
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
VKVDMGEPILKA +P ++ V+ E+ +N TCVS+GNPH +T+
Sbjct: 116 VKVDMGEPILKAETIPV---LSEKHPVIDEEITAKDYCYNFTCVSIGNPHAITYIEN--- 169
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
V++ L +IGP FE H FP +TN EFVE+I S +KMRVWERGAG TLACGTGACA
Sbjct: 170 ---VEEFPLEKIGPLFEIHEKFPRKTNVEFVELIDDSTVKMRVWERGAGETLACGTGACA 226
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V+VA+VL+G+ R+ TV L GG L IEW E DNH+YMTGPA VF G +
Sbjct: 227 VLVASVLKGYVGRKATVKLLGGDLTIEWNESDNHIYMTGPATTVFEGEI 275
>sp|Q3AC09|DAPF_CARHZ Diaminopimelate epimerase OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=dapF PE=1 SV=1
Length = 274
Score = 264 bits (674), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 141/288 (48%), Positives = 185/288 (64%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVD---NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTD 135
+ F+K HGLGNDF++VD N+N ++ + A K+CDR FGIGADG++ +P D
Sbjct: 1 MEFLKMHGLGNDFVVVDEIKNQNLVNKNLS-DLAKKICDRRFGIGADGLVLLLPS-EKAD 58
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
+ MRI NSDGSE EMCGN +RC AR+ E N K+ V T AG+I PE+ ++ V+V
Sbjct: 59 FKMRIINSDGSEAEMCGNAIRCVARYYVEKYN-PAKKQLEVETLAGIIKPEVLENNMVRV 117
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
DMG PILK ++P ++ ++ V L+V G K+ T VSMGNPH V F
Sbjct: 118 DMGRPILKPQEIPVAV----EEEPVNIPLEVLGQKFYFTAVSMGNPHAVIFVDS------ 167
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+ K+ L + GP E H +FP +TN EFVEI+SP+++K+ VWERGAGATLACGTGA AVVV
Sbjct: 168 LAKIELEKYGPLIETHPLFPRKTNVEFVEILSPAKVKVFVWERGAGATLACGTGASAVVV 227
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
A + GH + V LPGG L I W ++ VYMTGPAE+VF G L
Sbjct: 228 AGRILGHLQEDVEVVLPGGSLFINWVFGES-VYMTGPAEIVFKGEYFL 274
>sp|A5D193|DAPF_PELTS Diaminopimelate epimerase OS=Pelotomaculum thermopropionicum
(strain DSM 13744 / JCM 10971 / SI) GN=dapF PE=1 SV=1
Length = 280
Score = 263 bits (672), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 140/287 (48%), Positives = 183/287 (63%), Gaps = 17/287 (5%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+HF K HGLGNDFILVD + P P A K+CDR+FG+GADG++ +P + D +
Sbjct: 1 MHFTKAHGLGNDFILVDCFKEKVNPEDFPGLAVKMCDRHFGVGADGLVLLLPSPS-ADVS 59
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKVK-- 194
MRIFN DGSE EMCGN +RC A+++ E + V T AG+++PE+ ++G+V+
Sbjct: 60 MRIFNPDGSEAEMCGNAIRCVAKYLYE-RGMVKADRIRVETLAGVMIPELLVEEGRVRLV 118
Query: 195 -VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMGEP L+ S++P + V+ L+ G + +T VSMGNPHCV F Q+
Sbjct: 119 RVDMGEPRLERSEIPMEGPPGR---VLGEPLETGGAVYRITAVSMGNPHCVIFV----QD 171
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
L D + GP E H FP RTN EF+++++P ++KMRVWERGAG T+ACGTGACA
Sbjct: 172 L--DAVPFQTAGPLIETHPAFPRRTNVEFIQVLTPEEIKMRVWERGAGETMACGTGACAA 229
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
VVA VL G+ RR TV L G L IEW E HVYM+GPAE VF G
Sbjct: 230 VVAGVLNGYTGRRVTVHLKAGDLFIEWP-EGKHVYMSGPAEEVFSGE 275
>sp|B8IZX7|DAPF_DESDA Diaminopimelate epimerase OS=Desulfovibrio desulfuricans (strain
ATCC 27774 / DSM 6949) GN=dapF PE=1 SV=1
Length = 287
Score = 258 bits (659), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 141/294 (47%), Positives = 181/294 (61%), Gaps = 20/294 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITP--EQAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
L F K G+GND++ + N + RI E A K+ DR+FGIG+DG++ +P D
Sbjct: 5 LRFTKMQGIGNDYVYI---NGFQERIDSPGELARKISDRHFGIGSDGLVLILPSAT-ADV 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL-IVPEIQDDGKV-- 193
MR+FN+DGSE EMCGN VRC +++ + + K TV T AG+ IV + + GKV
Sbjct: 61 RMRMFNADGSESEMCGNAVRCVGKYVYD-HGIQVKDVITVETRAGVKIVRLLFEAGKVCG 119
Query: 194 -KVDMGEPILKASDVPTSLSANKD---QSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTK 249
VDMGEP L + +P + D Q V +DV+G + +T VSMGNPH V F
Sbjct: 120 ATVDMGEPELHPARIPVLTETSGDGSQQRFVARPVDVNGQLYEITAVSMGNPHAVIFMKG 179
Query: 250 EGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTG 309
+D L+L IGP+FEHH +FP RTNTEF E+IS ++++MRVWERGAG TLACGTG
Sbjct: 180 ------IDDLDLPRIGPRFEHHPLFPKRTNTEFAEVISSTKVRMRVWERGAGETLACGTG 233
Query: 310 ACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
ACAV VA VL G+A R V+L GG L I W E NHVYMTG A VF G +
Sbjct: 234 ACAVAVACVLNGYAGRDVEVELKGGSLHIHWDEASNHVYMTGGAVTVFSGEYYI 287
>sp|B1I545|DAPF_DESAP Diaminopimelate epimerase OS=Desulforudis audaxviator (strain
MP104C) GN=dapF PE=1 SV=1
Length = 278
Score = 257 bits (657), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 139/285 (48%), Positives = 169/285 (59%), Gaps = 14/285 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+ F K HGLGNDF++V+ + P A ++CDR G+GADG++ +P D M
Sbjct: 1 MEFTKMHGLGNDFVIVNGFGQSLPDDPGALARRVCDRRLGVGADGLVLLLPSA-AADLRM 59
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK---VKV 195
R+FN DGSEPEMCGN +RC A + A L K V T AGLI PEI DG V+V
Sbjct: 60 RVFNPDGSEPEMCGNAIRCVALY-ARRRGLVAKTQLEVETLAGLIRPEILLDGDRETVRV 118
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
DMG P L+ +++P A VV LD + VT VSMGNPHCV FG
Sbjct: 119 DMGRPRLERAEIPMRGPAG---PVVGEVLDAGERSFMVTAVSMGNPHCVVFGAD------ 169
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
+D + GP E H FPARTN EFVE++SP ++ +RVWERG G T ACGTGACAV V
Sbjct: 170 LDDAGFRKYGPLLEVHPAFPARTNVEFVEVLSPGEVAVRVWERGVGPTPACGTGACAVAV 229
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGS 360
A VL G RR V LPGG L IEW ++ VYM+GPAE VF G
Sbjct: 230 AGVLTGRTARRVHVRLPGGVLLIEWPDDAGPVYMSGPAEEVFDGK 274
>sp|Q7V7M5|DAPF_PROMM Diaminopimelate epimerase OS=Prochlorococcus marinus (strain MIT
9313) GN=dapF PE=1 SV=1
Length = 303
Score = 250 bits (638), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 130/286 (45%), Positives = 177/286 (61%), Gaps = 11/286 (3%)
Query: 78 FLHFVKYHGLGNDFILVDNRNS--TEPRITPEQAA--KLCDRNFGIGADGVIFAMPGVNG 133
L F KY GLGNDF+L+D R T+ I P+ A K+CDR+FGIGADG+I A+P
Sbjct: 4 MLQFSKYQGLGNDFLLIDGREDQLTQQVINPDPAWVRKICDRHFGIGADGLILALPPRAD 63
Query: 134 TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKV 193
D M+IFN+DGS EMCGNG+RC RF+A++E Q + + T AG+I P +Q+DG++
Sbjct: 64 GDLRMQIFNADGSLAEMCGNGIRCLTRFLADIEGDLCVQRWNIETLAGIICPVLQEDGQI 123
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG P L +PT+L+ + + E + +V V MGNPH + ++ +N
Sbjct: 124 CVDMGTPFLDPESIPTTLTIGS-AGLPQGECHLGSTSLHVAAVGMGNPHLIV-PVEDLEN 181
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
+ + G + E H FPA+TN F++I SP+QL++RVWERG+G TLACGTGACA
Sbjct: 182 IPFENW-----GQRLEKHHAFPAKTNVHFLKIHSPNQLEIRVWERGSGPTLACGTGACAS 236
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
+VA L G ++ V LPGG L I W V+MTGPAE +F G
Sbjct: 237 LVATCLLGLSDDHAEVLLPGGVLQISWPGRRGSVFMTGPAEPIFDG 282
>sp|B8CX90|DAPF_HALOH Diaminopimelate epimerase OS=Halothermothrix orenii (strain H 168 /
OCM 544 / DSM 9562) GN=dapF PE=1 SV=1
Length = 284
Score = 248 bits (634), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 131/290 (45%), Positives = 183/290 (63%), Gaps = 16/290 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYT 137
L F K HG GNDFI+V+ N + + + A +LC R+F IGADG+I +P + D+
Sbjct: 3 LSFTKMHGTGNDFIMVNGSNYPDLDFS-KLARQLCRRHFSIGADGLIIVLPPESVEHDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI----QDDGKV 193
MRIFN+DGSE EMCGNG+RCFA ++ E NL + + T AG+I PEI D +
Sbjct: 62 MRIFNADGSEAEMCGNGIRCFAHYLRE-NNLTTRDVLKIETLAGIITPEIVSYNGDKSLI 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
KV+MG P K+ ++P ++ D V L + K N+ CVSMGNPH + F
Sbjct: 121 KVNMGRPHFKSEEIPVNIEDELDY-VKNFPLKIGNKKLNINCVSMGNPHTIIFVED---- 175
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V+++ ++ G + EH+ +FP +TN EF++I S ++ MRVWERG+G TLACGTGACA
Sbjct: 176 --VNQIPVSTWGQEIEHNPLFPQKTNVEFIQIQSEDEIIMRVWERGSGITLACGTGACAS 233
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
VVA + G + TV LPGG L+IEW+E+D V+MTGPAE V+ G +++
Sbjct: 234 VVAGIKNGLLKNMVTVHLPGGDLNIEWQEQD--VFMTGPAESVYTGKIVI 281
>sp|B0SC36|DAPF_LEPBA Diaminopimelate epimerase OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / Ames) GN=dapF PE=1 SV=1
Length = 280
Score = 248 bits (632), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 134/288 (46%), Positives = 176/288 (61%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
++F K G+GND++ +D + R++PEQ KL DRNFGIG DGVIF + N ++ M
Sbjct: 3 INFTKMEGIGNDYVYID-ATKNDIRLSPEQIQKLSDRNFGIGGDGVIF-IRNSNSGEFQM 60
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQD--DGKVK-- 194
++NSDGS EMCGNGVRC +F+ + L Q T+ TG G++ +++ +GKV+
Sbjct: 61 DMYNSDGSSSEMCGNGVRCVGKFVYD-HGLTKNQKPTIETGKGVLTLDLKTGTNGKVEMV 119
Query: 195 -VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMGEPILK S VP D+ V+ ++V G +++ T VSMGNPHCV +
Sbjct: 120 TVDMGEPILKPSLVPIVWKG--DEPVINQVIEVQGKQYHFTAVSMGNPHCVIYVDD---- 173
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D + EIGP E+H FP R N EFV I L R WERG G TLACGTGACAV
Sbjct: 174 --ADDFPVREIGPIIENHPFFPRRVNVEFVSIKGKDHLYQRTWERGTGETLACGTGACAV 231
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA++L G R +DL GG L IEW +E+ V+MTGPA+ VF G V
Sbjct: 232 TVASILNGKTGRSVRIDLRGGTLHIEW-QENGSVFMTGPAKEVFSGEV 278
>sp|B2KDH2|DAPF_ELUMP Diaminopimelate epimerase OS=Elusimicrobium minutum (strain Pei191)
GN=dapF PE=1 SV=1
Length = 274
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/283 (47%), Positives = 179/283 (63%), Gaps = 15/283 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQA--AKLCDRNFGIGADGVIFAMPGVNGTDY 136
+ FVKY GLGNDFIL+D + +I A KLCDR+FGIGADG+I P + DY
Sbjct: 1 MEFVKYQGLGNDFILID---CVKIKIDGLNALGKKLCDRHFGIGADGLIAVFPSAS-ADY 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
+RI NSDG+EPEMCGNG+RC RF+ + + ++ T T AG I E+ + VKVD
Sbjct: 57 KIRIINSDGTEPEMCGNGIRCAMRFV--FDYIKPQRKLTFETLAGPIKTELLAENLVKVD 114
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L A+ +P ++S + D V + ++G K T VSMGNPH V F +
Sbjct: 115 MGAPKLTAAQIPLNIS-DSDGRAVDIPVKLEGGKIKGTGVSMGNPHFVIFVED------I 167
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
K ++A+ G + E+++ FP +TN EFV++I+PS+L M+VWERG G TLACGTGACA +VA
Sbjct: 168 KKTDVAKTGKEVENNTAFPQKTNVEFVQVITPSRLCMKVWERGVGITLACGTGACASLVA 227
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
VL ER V+L GG L +EW ++ V+MTGPA VF G
Sbjct: 228 GVLNNKTERLALVELDGGQLTVEWPDDGASVFMTGPATEVFSG 270
>sp|A4J568|DAPF_DESRM Diaminopimelate epimerase OS=Desulfotomaculum reducens (strain
MI-1) GN=dapF PE=1 SV=1
Length = 284
Score = 247 bits (630), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/289 (47%), Positives = 184/289 (63%), Gaps = 23/289 (7%)
Query: 79 LHFVKYHGLGNDFILVD---NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAM-PGVNGT 134
++F K HGLGNDFILV+ + T+ T A ++CDR FGIGADG++ GV
Sbjct: 1 MYFTKVHGLGNDFILVNAGTGQGFTDDCST--LAKEVCDRKFGIGADGLVLLYDSGV--A 56
Query: 135 DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI-QDDGKV 193
D M+I NSDGSE EMCGN +RC A+++ + + K V T AG+IVP+I Q +G V
Sbjct: 57 DVRMKIVNSDGSEAEMCGNAIRCVAKYLYD-HGIIKKDEIKVETLAGIIVPQIIQQEGSV 115
Query: 194 K---VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKE 250
K VDMGEP ++ +++P V+ EL V+G + VT VSMGNPHC+ F
Sbjct: 116 KAVRVDMGEPRVERAEIPM---IGPPGQVIGEELAVNGKVYLVTAVSMGNPHCIIFVPD- 171
Query: 251 GQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGA 310
++ ++L ++GP+ E H FP +TN EFV+++ P++++M VWERGAG T+ACGTGA
Sbjct: 172 -----LEDISLTQVGPQIEVHPAFPKKTNVEFVQVLGPNEVRMVVWERGAGPTMACGTGA 226
Query: 311 CAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
CAV VA VL G ER TV LPGG L IEW E+ +YMTGPA VF G
Sbjct: 227 CAVAVAGVLNGFTERMVTVHLPGGSLMIEWA-ENGRIYMTGPATEVFSG 274
>sp|Q2RK34|DAPF_MOOTA Diaminopimelate epimerase OS=Moorella thermoacetica (strain ATCC
39073) GN=dapF PE=1 SV=1
Length = 279
Score = 244 bits (624), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 141/290 (48%), Positives = 177/290 (61%), Gaps = 15/290 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
+HFVK HGLGNDF+LV+ P P A ++C R FGIGADG+I +P M
Sbjct: 1 MHFVKMHGLGNDFVLVNAMTEKVPGDLPGLARRVCHRRFGIGADGLILVLPS-EQARLRM 59
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK----VK 194
RIFN DGSEPEMCGNG+RCFAR++ E G++ V T AG+I P + +G V+
Sbjct: 60 RIFNPDGSEPEMCGNGIRCFARYVYETGLAEGEE-LQVETLAGIIKPRLILEGGRVAGVR 118
Query: 195 VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNL 254
VDMG P L+ +P A V+ ++V+G W TCVSMGNPHCV F
Sbjct: 119 VDMGAPHLEREQIPM---AGTGSPVLDEPIEVNGETWRGTCVSMGNPHCVFFVED----- 170
Query: 255 KVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
V + +GP EHH +FP RTN EF+++++ +L+MRVWERGAG T+ACGTGACA
Sbjct: 171 -VTGAPVTTVGPVVEHHPLFPRRTNVEFIQVLNREELRMRVWERGAGETMACGTGACAAA 229
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VA L G + R+ TV L G L IEW DNHVYMTGPA VF G L+
Sbjct: 230 VAGALTGRSNRKVTVHLAAGDLQIEWSPVDNHVYMTGPAVEVFRGDFPLD 279
>sp|B6YS11|DAPF_AZOPC Diaminopimelate epimerase OS=Azobacteroides pseudotrichonymphae
genomovar. CFP2 GN=dapF PE=1 SV=1
Length = 275
Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 126/286 (44%), Positives = 174/286 (60%), Gaps = 18/286 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-AAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
+ F K HG GND+I +D E PE+ A +L DR+ GIG+DG++ MP + +
Sbjct: 1 MKFTKMHGAGNDYIYIDC--FKEKIDCPEELAIRLSDRHKGIGSDGLVLIMPS-DKCSFR 57
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL----IVPEIQDDGKV 193
MR+FNSDGSE +MCGN +RC +++ + K + T+ T AG+ + P KV
Sbjct: 58 MRMFNSDGSEAQMCGNAIRCVGKYVYD-NGYTRKLNITIETLAGVKQLELFPTNDKIRKV 116
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
KV+MG+PIL A D+P K ++ +D +W +T VSMGNPH V F K
Sbjct: 117 KVNMGKPILLAKDIPVIWEKEK---LIYETIDFSSEQWILTAVSMGNPHVVIFVEK---- 169
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
V +L++ IG + EHH +FP + N +FVEI+S KMRVWERG+G T ACGTGACA
Sbjct: 170 --VSRLDVKRIGKEIEHHPMFPEKINVDFVEILSLYHAKMRVWERGSGETQACGTGACAA 227
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYG 359
+VA+VL G R+ T+ L GG L++EW E+ HV+MTG A +VF G
Sbjct: 228 LVASVLNGKLNRKATISLLGGDLELEWDEKTEHVFMTGDASLVFIG 273
>sp|B3PEI8|DAPF_CELJU Diaminopimelate epimerase OS=Cellvibrio japonicus (strain Ueda107)
GN=dapF PE=1 SV=1
Length = 276
Score = 238 bits (606), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 130/286 (45%), Positives = 168/286 (58%), Gaps = 13/286 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
+ F K HGLGNDF+++D + T R+TPE+ KL DR+FG+G D V+ +P D+
Sbjct: 3 IRFSKMHGLGNDFVVIDGISQTV-RLTPEKIRKLADRHFGVGCDQVLLVEIPEQPNVDFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DGSE E CGNG RCFA F+ E L GK+ V T G+I +QDD +V VDM
Sbjct: 62 YRIFNCDGSEVENCGNGARCFAVFVRE-RRLTGKRVIRVETAGGIIELRVQDDEQVSVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P L +P + DQ V LDV G +++ VSMGNPH V V
Sbjct: 121 GVPRL----LPEKIPFVADQQAVTYPLDVAGQVCSISAVSMGNPHAVMLVDD------VK 170
Query: 258 KLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317
+ ++GP E+H FPAR N F++++S ++ +RV+ERGAG TLACGTGACA VV
Sbjct: 171 SAPVGQLGPLVENHPRFPARVNAGFLQVVSRDEINLRVYERGAGETLACGTGACAAVVTG 230
Query: 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
L G V+LPGG L I W E + V MTGPA VF+G + L
Sbjct: 231 RLRGLLNDTVKVNLPGGSLRISWPGEGHSVIMTGPAVTVFHGQIKL 276
>sp|C0QAP3|DAPF_DESAH Diaminopimelate epimerase OS=Desulfobacterium autotrophicum (strain
ATCC 43914 / DSM 3382 / HRM2) GN=dapF PE=1 SV=1
Length = 283
Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/290 (47%), Positives = 177/290 (61%), Gaps = 18/290 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPE--QAAKLCDRNFGIGADGVIFAMPGVNGTDY 136
L+F K GLGNDF+++D+RN + P A KLC R FG+G DG+I + D
Sbjct: 3 LNFTKMEGLGNDFVMLDDRNGAIVQTVPYPVLAKKLCSRRFGVGGDGIIIIIDS-ETADV 61
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEI--QDDGKVK 194
+IFN DGSEPEMCGNG+RCFA+ + E + + KQ FTV T AG I+PEI D +V+
Sbjct: 62 GFKIFNPDGSEPEMCGNGMRCFAKLVFE-QGIVTKQRFTVETLAGTIIPEILLSDTRQVE 120
Query: 195 ---VDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEG 251
VDMGEPIL+ +P N+ Q V ++ V G ++T VSMGNPH V F
Sbjct: 121 AICVDMGEPILEPDRIP--FKCNR-QRAVNEQIQVKGETVSITAVSMGNPHAVIFVDD-- 175
Query: 252 QNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGAC 311
V K++L +G E H +FPA+TN EFV +++ +L MRVWERGAG TLACGTGA
Sbjct: 176 ----VKKIDLENLGRAIETHELFPAKTNVEFVTVLNDQELVMRVWERGAGETLACGTGAS 231
Query: 312 AVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
AV+VAA L G V L GG L I W ++ NH++ TGPA VF G +
Sbjct: 232 AVLVAASLNGLTRETALVHLAGGDLSIHWDQQSNHLFKTGPATHVFTGRI 281
>sp|C4Z900|DAPF_EUBR3 Diaminopimelate epimerase OS=Eubacterium rectale (strain ATCC 33656
/ VPI 0990) GN=dapF PE=1 SV=1
Length = 285
Score = 236 bits (603), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/293 (44%), Positives = 176/293 (60%), Gaps = 21/293 (7%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRIT-PEQAA-KLCDRNFGIGADGVIFAMPGVNGTDY 136
+ F K HG GND++ V N E ++ P + + + DR+FGIG+DG+I P + D+
Sbjct: 1 MKFTKMHGCGNDYVYV---NLFEEKLDDPARVSIYVSDRHFGIGSDGLITIGPS-DKADF 56
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGL----IVPEIQDDGK 192
MRI+N+DGSE EMCGNG+RC A+++ + L K +V TGAG+ + E +
Sbjct: 57 RMRIYNADGSEAEMCGNGIRCVAKYVYD-HKLTDKTEISVETGAGIKYLTLYVEENKVSQ 115
Query: 193 VKVDMGEPILKASDVPT----SLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGT 248
V+VDMGEPIL D+P + + D V+ + +W++TCVSMGNPH V F
Sbjct: 116 VRVDMGEPILTPGDIPVVKADGSAYSDDYRVIDEPISAGNREWHMTCVSMGNPHAVVFVD 175
Query: 249 KEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGT 308
V L + GP FE+H +FP RTNTEFVEI+S ++ KMRVWERG+ T ACGT
Sbjct: 176 D------VAGFELEKYGPLFENHKMFPKRTNTEFVEILSRNEAKMRVWERGSAETWACGT 229
Query: 309 GACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
G CA V+A +L + + V L GG L IE+ E NHV+MTGPA VF G +
Sbjct: 230 GTCATVMACILNKKTDNKVLVHLRGGDLTIEYIPETNHVFMTGPATEVFSGEI 282
>sp|Q21P78|DAPF_SACD2 Diaminopimelate epimerase OS=Saccharophagus degradans (strain 2-40
/ ATCC 43961 / DSM 17024) GN=dapF PE=1 SV=1
Length = 277
Score = 235 bits (600), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/285 (45%), Positives = 168/285 (58%), Gaps = 14/285 (4%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HGLGNDF+++D S ITPE+A +L DR+FG+G D V+ P D+
Sbjct: 3 LRFTKMHGLGNDFVMIDAI-SQRVTITPERARQLADRHFGVGCDQVLVVETPDSPDADFK 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN DGSE E CGNG RCFA F+ + L K TV T G +V +Q+D +V VDM
Sbjct: 62 YRIFNHDGSEVENCGNGARCFAVFVRQ-RGLTAKSVITVETAVGRMVLHVQEDDQVTVDM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGV-KWNVTCVSMGNPHCVTFGTKEGQNLKV 256
G PIL +D+P + Q L G + VSMGNPH V + + + V
Sbjct: 121 GAPILSPADIPLA----APQQATSYTLPTQGAGDITIGAVSMGNPHAV-YCVNDCKTAPV 175
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
+ L GP+ E H FP + N F++++SPS++ +RV+ERGAG TLACGTGACA VVA
Sbjct: 176 ETL-----GPEIEAHPHFPKKVNAGFMQVVSPSEINLRVYERGAGETLACGTGACAAVVA 230
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
L+G E V+LPGG L I W+ D+ V MTGPA VF+G V
Sbjct: 231 GRLQGLLENTVKVNLPGGSLSITWEGVDSPVMMTGPATTVFHGQV 275
>sp|Q72W63|DAPF_LEPIC Diaminopimelate epimerase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=dapF PE=1 SV=1
Length = 281
Score = 234 bits (596), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 172/289 (59%), Gaps = 19/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYT 137
L F K G+GND++ +D+ RN R+TPEQ K+ DRNFGIG+DGVIF G D+
Sbjct: 4 LKFTKMEGIGNDYVYIDSTRNDI--RLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFM 60
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK----- 192
M ++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++
Sbjct: 61 MDMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTSSKNPKIETGAGILEVDLKIGSGNKVDL 119
Query: 193 VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ 252
V VDMG+P+L S +P + +++++ L++ T VSMGNPHCV F
Sbjct: 120 VSVDMGKPVLVPSQIP--VVWKNEETIIDQPLEIGDKNLKFTAVSMGNPHCVIFVDDS-- 175
Query: 253 NLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
D+ + IGP E HS+FP R N EFV I L R WERGAG TLACGTGACA
Sbjct: 176 ----DEFPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACA 231
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
V+VA L G + + +DL GG L I+W+E N + MTGPA +F G +
Sbjct: 232 VMVAGNLTGRSGKDVQIDLRGGTLRIQWQESGN-ILMTGPAREIFSGEI 279
>sp|Q8F9V5|DAPF_LEPIN Diaminopimelate epimerase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=dapF
PE=1 SV=1
Length = 281
Score = 231 bits (588), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 170/288 (59%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G+GND++ +D+ + R+TPEQ K+ DRNFGIG+DGVIF G D+ M
Sbjct: 4 LKFTKMEGIGNDYVYIDS-TRNDIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFMM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGK-----V 193
++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++ V
Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTSSKNPKIETGAGILEVDLKIGSGNKVDLV 120
Query: 194 KVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
VDMG+P+L S +P + +++++ L++ T VSMGNPHCV F
Sbjct: 121 SVDMGKPVLVPSQIP--VVWKNEETIIDQPLEIGDKNLKFTAVSMGNPHCVIFVDDS--- 175
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+ + IGP E HS+FP R N EFV I L R WERGAG TLACGTGACAV
Sbjct: 176 ---DEFPVRGIGPLIERHSIFPKRVNVEFVTIRGKDHLYQRTWERGAGETLACGTGACAV 232
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+VA L + + +DL GG L I+W+E N + MTGPA +F G +
Sbjct: 233 MVAGNLTRRSGKDVQIDLRGGTLRIQWQESGN-ILMTGPAREIFSGEI 279
>sp|Q2SQ64|DAPF_HAHCH Diaminopimelate epimerase OS=Hahella chejuensis (strain KCTC 2396)
GN=dapF PE=1 SV=1
Length = 276
Score = 230 bits (587), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/288 (45%), Positives = 170/288 (59%), Gaps = 19/288 (6%)
Query: 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDY 136
+ F K HGLGNDF++VD S PEQ +L DRNFG+G D ++ P G D+
Sbjct: 2 LIKFTKMHGLGNDFMVVD-LISQHAHFRPEQVRRLADRNFGVGFDQLLIVEPPGRPDADF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DGSE E CGNG RCFARF+ E L K++ V T G+I + DG V VD
Sbjct: 61 RYRIFNADGSEVEQCGNGARCFARFVKE-NRLTNKKNIRVETKKGIIELIVNKDGLVTVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P L +D+P A +++ ++V+GV + ++ VSMGNPH V L V
Sbjct: 120 MGAPRLAPADIP--FVAETQEAI--YPIEVNGVMYEISAVSMGNPHGV---------LVV 166
Query: 257 DKLNLA---EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D +N A ++G E+H FP R N F++++ K+RV+ERGAG TLACGTGACA
Sbjct: 167 DDVNKAPVHKLGKALENHPRFPERANIGFLQVVHRRFAKLRVFERGAGETLACGTGACAA 226
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VVA L G +R+ + LPGG L I W+ E + V MTGPA VF G V
Sbjct: 227 VVAGRLRGLLDRKVEIKLPGGNLKISWEGEGHPVMMTGPAVRVFDGQV 274
>sp|Q04X60|DAPF_LEPBL Diaminopimelate epimerase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=dapF PE=1 SV=1
Length = 281
Score = 230 bits (587), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 169/288 (58%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G+GND+I +D+ + R+TPEQ K+ +RNFGIG+DGVIF G D+ M
Sbjct: 4 LKFTKMEGIGNDYIYIDSTQAN-IRLTPEQIQKISNRNFGIGSDGVIFIRNSKQG-DFMM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD-- 196
++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++ KVD
Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTNSKNPKIETGAGVLEVDLKIGSGNKVDFV 120
Query: 197 ---MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
MG+PIL S +P + +++++ ++ G T VSMGNPHCV F
Sbjct: 121 SVNMGKPILVPSKIPVNWK--DEEAIIDQTFEIAGKNLKFTAVSMGNPHCVIFVDD---- 174
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+ + IGP E H +FP R N EFV + R WERGAG TLACGTGACAV
Sbjct: 175 --CDQFPVTGIGPLIERHPIFPKRINVEFVTVRGKDHFYQRTWERGAGETLACGTGACAV 232
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA L G + + +DL GG L I+W+E N V MTGPA+ +F G +
Sbjct: 233 TVAGNLTGKSGKEVKIDLRGGTLRIQWQESGN-VLMTGPAKEIFSGEI 279
>sp|Q04W97|DAPF_LEPBJ Diaminopimelate epimerase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197) GN=dapF PE=1 SV=1
Length = 281
Score = 230 bits (587), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 169/288 (58%), Gaps = 17/288 (5%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTM 138
L F K G+GND+I +D+ + R+TPEQ K+ +RNFGIG+DGVIF G D+ M
Sbjct: 4 LKFTKMEGIGNDYIYIDSTQAN-IRLTPEQIQKISNRNFGIGSDGVIFIRNSKQG-DFMM 61
Query: 139 RIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD-- 196
++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++ KVD
Sbjct: 62 DMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTNSKNPKIETGAGVLEVDLKIGSGNKVDFV 120
Query: 197 ---MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN 253
MG+PIL S +P + +++++ ++ G T VSMGNPHCV F
Sbjct: 121 SVNMGKPILVPSKIPVNWK--DEEAIIDQTFEIAGKNLKFTAVSMGNPHCVIFVDD---- 174
Query: 254 LKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAV 313
D+ + IGP E H +FP R N EFV + R WERGAG TLACGTGACAV
Sbjct: 175 --CDQFPVTGIGPLIERHPIFPKRINVEFVTVRGKDHFYQRTWERGAGETLACGTGACAV 232
Query: 314 VVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
VA L G + + +DL GG L I+W+E N V MTGPA+ +F G +
Sbjct: 233 TVAGNLTGKSGKEVKIDLRGGTLRIQWQESGN-VLMTGPAKEIFSGEI 279
>sp|C5BUL6|DAPF_TERTT Diaminopimelate epimerase OS=Teredinibacter turnerae (strain ATCC
39867 / T7901) GN=dapF PE=1 SV=1
Length = 276
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 170/289 (58%), Gaps = 19/289 (6%)
Query: 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYT 137
L F K HGLGNDF+++D S + ITPE+A KL DR+FG+G D V+ P D+
Sbjct: 3 LRFTKMHGLGNDFVMIDAI-SQKVTITPERARKLADRHFGVGCDQVLVVESPDNPDADFR 61
Query: 138 MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDM 197
RIFN+DGSE E CGNG RCFA F+ + L K V T AGL+ + DD +V V+M
Sbjct: 62 YRIFNNDGSEVENCGNGARCFAVFVRQ-RQLTAKSDIVVETAAGLLRLHVLDDNQVTVNM 120
Query: 198 GEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD 257
G P+L + +P + + L +D ++ ++ VSMGNPH VT VD
Sbjct: 121 GVPVLAPAQIPFVTPHEQPEY----PLQLDNMEITISAVSMGNPHAVTL---------VD 167
Query: 258 KLN---LAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVV 314
L + +G + E H+ FP R N F+E+IS ++K+RV+ERG G TLACGTGACA V
Sbjct: 168 NLASFPVKTLGAQIETHAQFPNRVNAGFMELISRQEVKLRVFERGVGETLACGTGACAAV 227
Query: 315 VAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363
V+ ++ G + V LPGG L I W+ + V MTGPA+ VF+G V L
Sbjct: 228 VSGIVRGLLDTTVAVHLPGGSLSITWEGAEKPVMMTGPAKAVFHGQVKL 276
>sp|Q46L14|DAPF_PROMT Diaminopimelate epimerase OS=Prochlorococcus marinus (strain
NATL2A) GN=dapF PE=1 SV=1
Length = 284
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 159/286 (55%), Gaps = 11/286 (3%)
Query: 80 HFVKYHGLGNDFILVDNRNSTEPRITPEQA----AKLCDRNFGIGADGVIFAMPGVNGTD 135
+F KY GLGNDFI+ D R++ + + LC+RNFGIGADG+I + N
Sbjct: 4 NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCF 63
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
M+I+NSDGSEPEMCGNG+RC F+ + +N + T AGLI+ I + +KV
Sbjct: 64 VRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIETKAGLILTYIDGNENIKV 123
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
+MGEPIL D+PT L N V + + NV SMGNPH + F
Sbjct: 124 NMGEPILSPLDIPTKLLMNS-LKVPNGVITLKDQILNVYAASMGNPHMIVFVN------D 176
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
++ + E G E H+ FP TN FVEII S +K++VWERG G TLACGTGACA +V
Sbjct: 177 IEGIPFQEWGSFLEKHNTFPNDTNVHFVEIIDKSNIKVKVWERGCGPTLACGTGACACLV 236
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
G V LPGG L++EW + V+M GPA VF G +
Sbjct: 237 VTSKLGKTLNNANVYLPGGKLEVEWPNQSGPVFMQGPALKVFSGEI 282
>sp|Q0ACL9|DAPF_ALHEH Diaminopimelate epimerase OS=Alkalilimnicola ehrlichei (strain
MLHE-1) GN=dapF PE=1 SV=1
Length = 279
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 126/292 (43%), Positives = 170/292 (58%), Gaps = 21/292 (7%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNG-TDY 136
+ F K GLGNDF+++D R EP +PEQ + DR +G+G D V+ A P D+
Sbjct: 3 VRFTKMQGLGNDFVVIDAVRQPVEP--SPEQIRHIADRRYGVGCDQVLLATPARRSQADF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENL-NGKQSFTVHTGAGLIVPEIQDDGKVKV 195
IFN DGS+ E CGNGVRC ARF+ + + G+ + T GL + DDG V V
Sbjct: 61 GYLIFNPDGSQAEHCGNGVRCLARFLDDRGLVPAGRHELVIETINGLSRVRLCDDGPVTV 120
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
DMG P+L+ +P + + EL+V+G + VSMGNPH V L+
Sbjct: 121 DMGAPVLEPPHIPFRAPSRAREY----ELEVEGQVVRLGAVSMGNPHAV---------LR 167
Query: 256 VDKLNLAEI---GPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312
VD ++ A + GP E HS FP R N F+++++P+ +++RV+ERGAG TLACGTGACA
Sbjct: 168 VDDVDSAPVETLGPAIESHSRFPRRVNVGFMQVLTPTHIRLRVYERGAGETLACGTGACA 227
Query: 313 VVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364
VV+ L G E VDLPGG L I W + HV+MTGPAE VF G + L+
Sbjct: 228 AVVSGRLRGWLEEAVDVDLPGGRLVIHWAGDGEHVWMTGPAETVFEGEIRLD 279
>sp|A2C243|DAPF_PROM1 Diaminopimelate epimerase OS=Prochlorococcus marinus (strain
NATL1A) GN=dapF PE=1 SV=1
Length = 284
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 159/286 (55%), Gaps = 11/286 (3%)
Query: 80 HFVKYHGLGNDFILVDNRNSTEPRITPEQA----AKLCDRNFGIGADGVIFAMPGVNGTD 135
+F KY GLGNDFI+ D R++ + + LC+RNFGIGADG+I + N
Sbjct: 4 NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCF 63
Query: 136 YTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKV 195
M+I+NSDGSEPEMCGNG+RC F+ + +N + T AGLI+ I + +KV
Sbjct: 64 VRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIETKAGLILTSIDCNENIKV 123
Query: 196 DMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLK 255
+MGEPIL D+PT L N V + + NV SMGNPH + F
Sbjct: 124 NMGEPILSPLDIPTKLLMNS-LKVPNGVITLKDQILNVYAASMGNPHMIVFVN------D 176
Query: 256 VDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315
++ + E G E H+ FP TN FVEII S +K++VWERG G TLACGTGACA +V
Sbjct: 177 IEGIPFQEWGSFLEKHNTFPNDTNVHFVEIIDKSNIKVKVWERGCGPTLACGTGACACLV 236
Query: 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
G V LPGG L++EW + V+M GPA VF G +
Sbjct: 237 VTSKLGKTLNNANVYLPGGKLEVEWPNQSGPVFMQGPALKVFSGEI 282
>sp|Q5P2V2|DAPF_AROAE Diaminopimelate epimerase OS=Aromatoleum aromaticum (strain EbN1)
GN=dapF PE=1 SV=1
Length = 277
Score = 228 bits (581), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 124/285 (43%), Positives = 162/285 (56%), Gaps = 15/285 (5%)
Query: 79 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDY 136
L F K HGLGNDF+++D R S + +TPEQ +L DR+FGIG D ++ D+
Sbjct: 3 LRFTKMHGLGNDFVVIDAIRQSVD--LTPEQVRRLADRHFGIGCDQLLVVEEATRPDVDF 60
Query: 137 TMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVD 196
RIFN+DG E E CGNG RCF RF+ E + L K+ V T +G+I P+++DDG V VD
Sbjct: 61 RYRIFNADGGEVEQCGNGARCFVRFVHE-QGLTAKRRIRVETRSGIIAPQLEDDGLVTVD 119
Query: 197 MGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKV 256
MG P+L+ + VP D + LDV G +T VSMGNPH V
Sbjct: 120 MGVPVLEPARVPFV----SDSDAIVQPLDVGGETVAITAVSMGNPHAVQVVADVDAAPVA 175
Query: 257 DKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316
+ G E H FPAR N FV+++ ++++RV+ERGAG TLACGTGACA VV
Sbjct: 176 AQ------GALIERHPRFPARVNAGFVQVVDAHRIRLRVFERGAGETLACGTGACAAVVT 229
Query: 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSV 361
+L A+ V+ GG LDI W+ V MTGPA VF G +
Sbjct: 230 VILRELAQSPVRVETRGGELDIAWEGPGQPVLMTGPAVTVFAGEI 274
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,353,922
Number of Sequences: 539616
Number of extensions: 6123766
Number of successful extensions: 15989
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 13610
Number of HSP's gapped (non-prelim): 584
length of query: 364
length of database: 191,569,459
effective HSP length: 119
effective length of query: 245
effective length of database: 127,355,155
effective search space: 31202012975
effective search space used: 31202012975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)