Query 017920
Match_columns 364
No_of_seqs 212 out of 1365
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:34:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017920.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017920hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0253 DapF Diaminopimelate e 100.0 4.1E-75 8.8E-80 547.5 31.9 271 79-363 1-272 (272)
2 PRK13577 diaminopimelate epime 100.0 5E-70 1.1E-74 522.3 33.7 273 79-363 1-274 (281)
3 PLN02536 diaminopimelate epime 100.0 1.3E-68 2.8E-73 508.3 31.2 256 104-363 11-267 (267)
4 TIGR00652 DapF diaminopimelate 100.0 2.6E-65 5.7E-70 486.5 33.2 266 79-363 1-268 (268)
5 PRK00450 dapF diaminopimelate 100.0 5.6E-62 1.2E-66 464.6 33.8 272 77-364 1-273 (274)
6 TIGR00654 PhzF_family phenazin 100.0 2.3E-47 5E-52 367.9 24.5 261 81-363 11-297 (297)
7 COG0384 Predicted epimerase, P 100.0 5.9E-34 1.3E-38 271.9 26.5 260 81-363 12-291 (291)
8 PRK10281 hypothetical protein; 100.0 4.1E-34 9E-39 276.1 25.1 261 81-363 11-299 (299)
9 PF02567 PhzC-PhzF: Phenazine 100.0 2.6E-33 5.6E-38 267.7 17.4 253 81-359 4-281 (281)
10 KOG3033 Predicted PhzC/PhzF-ty 100.0 1.6E-28 3.4E-33 224.8 20.1 266 79-363 11-286 (286)
11 PF01678 DAP_epimerase: Diamin 99.9 8.6E-26 1.9E-30 190.2 13.8 119 81-202 1-120 (121)
12 PRK13969 proline racemase; Pro 99.9 3.4E-22 7.3E-27 194.8 26.9 268 78-364 6-323 (334)
13 PF01678 DAP_epimerase: Diamin 99.8 1.1E-20 2.4E-25 159.1 12.5 115 235-356 2-121 (121)
14 PRK13971 hydroxyproline-2-epim 99.8 1.7E-16 3.8E-21 154.5 28.8 266 78-364 5-321 (333)
15 PRK13970 hydroxyproline-2-epim 99.7 3.1E-16 6.8E-21 150.9 23.2 264 78-364 4-300 (311)
16 PF05544 Pro_racemase: Proline 99.5 5.7E-12 1.2E-16 122.6 27.2 264 82-364 2-315 (325)
17 COG3938 Proline racemase [Amin 99.4 4.9E-10 1.1E-14 105.7 25.5 269 78-364 6-323 (341)
18 PF04303 PrpF: PrpF protein; 96.8 0.2 4.3E-06 50.1 19.6 274 78-363 3-370 (371)
19 TIGR00654 PhzF_family phenazin 96.6 0.017 3.8E-07 55.7 10.7 96 237-345 16-115 (297)
20 PF02567 PhzC-PhzF: Phenazine 96.6 0.03 6.5E-07 53.4 12.0 89 238-339 10-101 (281)
21 TIGR02334 prpF probable AcnD-a 96.2 0.34 7.4E-06 48.6 17.4 74 290-363 296-385 (390)
22 TIGR00652 DapF diaminopimelate 96.2 0.08 1.7E-06 50.5 12.2 102 84-191 147-250 (268)
23 PRK13577 diaminopimelate epime 96.0 0.17 3.7E-06 48.6 13.8 104 79-189 149-254 (281)
24 PRK10281 hypothetical protein; 96.0 0.065 1.4E-06 52.1 10.8 94 237-343 16-112 (299)
25 PRK00450 dapF diaminopimelate 94.7 0.45 9.8E-06 45.3 11.9 55 133-189 198-252 (274)
26 COG0384 Predicted epimerase, P 93.9 0.57 1.2E-05 45.5 10.6 96 237-345 17-115 (291)
27 COG0253 DapF Diaminopimelate e 92.3 2.8 6E-05 40.3 12.5 102 84-191 150-253 (272)
28 PRK13969 proline racemase; Pro 91.4 0.83 1.8E-05 45.2 8.2 69 289-358 75-151 (334)
29 KOG3033 Predicted PhzC/PhzF-ty 89.6 1 2.2E-05 42.6 6.6 71 121-191 192-267 (286)
30 PRK13971 hydroxyproline-2-epim 89.5 1.4 3.1E-05 43.5 7.9 77 279-356 62-147 (333)
31 COG2828 Uncharacterized protei 85.6 9.7 0.00021 37.3 10.7 73 291-363 286-373 (378)
32 PRK13970 hydroxyproline-2-epim 83.3 0.92 2E-05 44.4 2.8 68 288-357 72-140 (311)
33 PLN02536 diaminopimelate epime 80.5 11 0.00025 35.9 9.2 62 280-341 31-95 (267)
34 PF05544 Pro_racemase: Proline 77.4 17 0.00037 35.9 9.4 74 288-362 66-147 (325)
35 TIGR02334 prpF probable AcnD-a 73.3 32 0.0007 34.8 10.3 109 78-188 203-356 (390)
36 PF04303 PrpF: PrpF protein; 66.2 55 0.0012 33.0 10.2 109 78-188 190-343 (371)
37 COG3938 Proline racemase [Amin 60.0 18 0.00039 35.2 5.2 61 290-351 76-144 (341)
38 COG1903 CbiD Cobalamin biosynt 39.2 39 0.00084 33.9 4.1 38 301-340 13-54 (367)
39 PRK00075 cbiD cobalt-precorrin 29.9 65 0.0014 32.3 4.0 38 301-340 12-53 (361)
40 TIGR03239 GarL 2-dehydro-3-deo 24.8 1.2E+02 0.0026 28.6 4.7 14 86-99 31-44 (249)
41 TIGR00312 cbiD cobalamin biosy 24.5 1.1E+02 0.0024 30.5 4.6 29 305-334 2-30 (347)
42 COG2263 Predicted RNA methylas 22.3 42 0.00092 30.7 1.0 18 302-321 50-67 (198)
43 PRK10128 2-keto-3-deoxy-L-rham 20.7 1.6E+02 0.0034 28.2 4.6 15 86-100 37-51 (267)
44 PRK10558 alpha-dehydro-beta-de 20.4 1.6E+02 0.0034 27.9 4.6 15 86-100 38-52 (256)
45 KOG0460 Mitochondrial translat 20.3 62 0.0014 32.5 1.8 14 238-251 168-181 (449)
No 1
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-75 Score=547.49 Aligned_cols=271 Identities=50% Similarity=0.890 Sum_probs=243.1
Q ss_pred eEEEeeeCCCCcEEEEeCCCCCCCCCCHHHHHHhhhccCCcccceEEEEecC-CCCCcEEEEEEeCCCCcCCCcchhHHH
Q 017920 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPG-VNGTDYTMRIFNSDGSEPEMCGNGVRC 157 (364)
Q Consensus 79 i~F~K~~g~GNdfvvid~~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~-~~~ad~~mRiFnpDGsE~emCGNgtrc 157 (364)
|+|+||||+||||||||.++... ..+++++++||||++||||||++||+++ ++++||+|||||+||||++|||||+||
T Consensus 1 ~~F~KmhG~GNdfivvd~~~~~~-~~~~~~a~~l~~r~~giGaDgvl~i~~p~s~~~d~~~rifN~DGS~ae~CGNG~Rc 79 (272)
T COG0253 1 MEFSKMHGLGNDFIVVDEFDKKD-EETPELARALCDRHFGIGADGVLFVEPPRSPGADFHLRIFNSDGSEAEMCGNGARC 79 (272)
T ss_pred CeeEEEcCCCCcEEEEecccccc-ccCHHHHHHHHhcccCcCCceEEEEecCCCCCCCEEEEEEeCCCCHHhhcccHHHH
Confidence 68999999999999999998753 5789999999999999999999999865 468899999999999999999999999
Q ss_pred HHHHHHHHccCCCCcEEEEEeCCeeEEEEEeeCceEEEEcCCCccCCCCCCCccccCccccccccceeeCCeeEEEEEEE
Q 017920 158 FARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVS 237 (364)
Q Consensus 158 ~a~~L~~~~g~~~~~~i~ieT~aG~l~v~v~~~g~v~V~mg~p~~~~~~ip~~~~~~~~~~~l~~~l~i~~~~~~~~~Vs 237 (364)
+|+||++ +++..++++.++|.+|++.+++..++.++|+|+.|.|.+..+|.. .+.+...+.+......+.+|+
T Consensus 80 ~a~~l~~-~~~~~~~~~~v~T~~G~~~~~~~~~~~v~VdMg~p~~~~~~ip~~------~~~~~~~~~~~~~~~~~~~vs 152 (272)
T COG0253 80 FARFLAE-RGLVKKKEISVETLAGILKVKVHDDNTVSVDMGLPSFKPAEIPLL------EEKVEEQYGLGEETVTFYAVS 152 (272)
T ss_pred HHHHHHH-hcCCcCccEEEEeccceEEEEEecCCEEEEEcCCCccccccCCch------hhhccccccccccceeEEEEe
Confidence 9999999 888877789999999999999998889999999999999988853 111122222222334567899
Q ss_pred cCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEeCCCeEEEEEeeCCCCCCCCchhhHHHHHHHH
Q 017920 238 MGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317 (364)
Q Consensus 238 ~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~~~~~i~~R~fErGvgEt~ACGTGa~A~a~aa 317 (364)
|||||+|++++ +++..+++.+||.++.|+.||+++||.|+++.++++|++||||||+|||+|||||+||+++++
T Consensus 153 ~GnPH~V~~Vd------dv~~~~~~~~g~~l~~h~~Fp~~vNV~F~~v~~~~~i~vrv~ERG~G~T~ACGTGa~Aa~~~a 226 (272)
T COG0253 153 MGNPHLVIFVD------DVETANLEELGPLLESHELFPEGVNVGFVQVLSRDAIRLRVYERGAGETLACGTGACAAAVVA 226 (272)
T ss_pred cCCCeEEEEeC------CcccchhhhhhhhhhcCccCCCceEEEEEEeCCCCcEEEEEeecCCcccccchhHHHHHHHHH
Confidence 99999999999 788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCceEEEccCccEEEEEeecCCeEEEEeceEEEEEEEEEe
Q 017920 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363 (364)
Q Consensus 318 ~~~g~~~~~~~V~~~GG~L~V~~~~~~~~V~i~G~A~~V~~G~i~i 363 (364)
++.|+.+..++|.+|||.|.|+|++++.+++|+|||++||+|++++
T Consensus 227 ~~~~~~~~~v~V~~pGG~L~i~~~~~g~~v~m~G~a~~v~~G~~~~ 272 (272)
T COG0253 227 ARLGLLDRKVTVHLPGGTLEIEWKDDGKPVYMTGPATRVAEGKLYI 272 (272)
T ss_pred HHhccCCCcEEEEcCCCeEEEEEEcCCceEEEEecEEEEEeeEEcC
Confidence 9999999999999999999999987544799999999999999864
No 2
>PRK13577 diaminopimelate epimerase; Provisional
Probab=100.00 E-value=5e-70 Score=522.26 Aligned_cols=273 Identities=38% Similarity=0.759 Sum_probs=240.5
Q ss_pred eEEEeeeCCCCcEEEEeCCCCCCCCCCHHHHHHhhhccCCcccceEEEEecCCCCCcEEEEEEeCCCCcCCCcchhHHHH
Q 017920 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCF 158 (364)
Q Consensus 79 i~F~K~~g~GNdfvvid~~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~~~~ad~~mRiFnpDGsE~emCGNgtrc~ 158 (364)
|+|+||||+||||+|||+++.. ..++++++++||||++|||+||++++.++++.+||+||||||||||++|||||+||+
T Consensus 1 ~~f~K~~g~GNdfvVvd~~~~~-~~~~~~~~~~i~~R~~gig~Dg~i~~~~~~~~~d~~mrifn~DGseaemCGNg~Rc~ 79 (281)
T PRK13577 1 MKFYKYHALGNDYLVIDPRDAP-FDPSADAIRRICHRHFGVGSDGILFGPLPSEGADFGLRIFNPDGSEAEKSGNGLRIF 79 (281)
T ss_pred CcEEEecCCCCCEEEEECCCCC-CCCCHHHHHHhhccccCcCCCEEEEEecCCCCCCEEEEEEcCCCCHHHhccccHHHH
Confidence 5799999999999999998753 246789999999999999999999965544578999999999999999999999999
Q ss_pred HHHHHHHccCCCCcEEEEEeCCeeEEEEEeeCc-eEEEEcCCCccCCCCCCCccccCccccccccceeeCCeeEEEEEEE
Q 017920 159 ARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG-KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVS 237 (364)
Q Consensus 159 a~~L~~~~g~~~~~~i~ieT~aG~l~v~v~~~g-~v~V~mg~p~~~~~~ip~~~~~~~~~~~l~~~l~i~~~~~~~~~Vs 237 (364)
++||++ +++.+++.++|||.+|++++++..++ .++|+|++|.+.+..+|... +..+.+...+.+++..+++++|+
T Consensus 80 a~~l~~-~~~~~~~~~~ieT~aG~~~~~v~~~~~~v~v~mg~p~~~~~~~~~~~---~~~~~i~~~l~i~~~~~~~~~vs 155 (281)
T PRK13577 80 SRYLWD-QGLVDDEPFTIETKGGIVECQVLDAGRTIQVEMGKVSFGSTDIPVAG---EDREVLNEKLDVDGRRLTYCAAT 155 (281)
T ss_pred HHHHHH-cCCCCCCcEEEEECCceEEEEEECCCcEEEEECCCceeccccCCccc---ccccccceEeeeCCcEEeEEEEE
Confidence 999998 88777778999999999999986443 69999999999887777521 11123445566766678899999
Q ss_pred cCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEeCCCeEEEEEeeCCCCCCCCchhhHHHHHHHH
Q 017920 238 MGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317 (364)
Q Consensus 238 ~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~~~~~i~~R~fErGvgEt~ACGTGa~A~a~aa 317 (364)
+||||+|++++ +++..++..+|+.+++|+.||+++|++|+++.++++|++|+||||+|||+|||||+||+|+|+
T Consensus 156 ~G~PH~Vv~V~------~~~~~~~~~~g~~~~~~~~fp~~~Nv~f~~~~~~~~i~~R~~ErG~g~T~AcGTga~A~a~~~ 229 (281)
T PRK13577 156 IGNPHCVVLLD------EISEELARELGPLIETHPRFPNRTNVQFLKVLDRNTIQIEIWERGAGYTLASGSSSCAAAAVA 229 (281)
T ss_pred CCCCcEEEEeC------CcchhhHHhhCccccccCCCCCCceEEEEEEccCCeEEEEEECCCCCCCccCHHHHHHHHHHH
Confidence 99999999999 777788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCceEEEccCccEEEEEeecCCeEEEEeceEEEEEEEEEe
Q 017920 318 VLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363 (364)
Q Consensus 318 ~~~g~~~~~~~V~~~GG~L~V~~~~~~~~V~i~G~A~~V~~G~i~i 363 (364)
+++|+.+.+++|++|||.|.|+|+. ++.|+|+|+|++||+|++.+
T Consensus 230 ~~~g~~~~~~~V~~pGG~l~v~~~~-~~~v~l~G~a~~v~~G~~~~ 274 (281)
T PRK13577 230 HRLGLCDSSITVHMPGGQIDIEIKD-DFHVSMTGPVTKVAEGSLSP 274 (281)
T ss_pred HHhCCCCCeEEEEcCCCEEEEEEEC-CCcEEEEcCCEEEEEEEEEH
Confidence 9999888789999999999999974 34799999999999999864
No 3
>PLN02536 diaminopimelate epimerase
Probab=100.00 E-value=1.3e-68 Score=508.30 Aligned_cols=256 Identities=79% Similarity=1.336 Sum_probs=220.1
Q ss_pred CCHHHHHHhhhccCCcccceEEEEecCCCCCcEEEEEEeCCCCcCCCcchhHHHHHHHHHHHccCCC-CcEEEEEeCCee
Q 017920 104 ITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGL 182 (364)
Q Consensus 104 ~~~~~~~~lcdR~~GIGaDgvlfV~p~~~~ad~~mRiFnpDGsE~emCGNgtrc~a~~L~~~~g~~~-~~~i~ieT~aG~ 182 (364)
++++++++|||||+||||||++||.++.+.+||+||||||||||++|||||+||+++||++ ++..+ +++++++|.+|+
T Consensus 11 ~~~~~~~~lc~R~~GiGaDgli~i~~~~~~ad~~mrifN~DGSea~mCGNg~Rc~a~~l~~-~~~~~~~~~~~ieT~aG~ 89 (267)
T PLN02536 11 LTPEQAVKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGIRCFARFIAE-LENLQGKNSYKIHTGAGL 89 (267)
T ss_pred CCHHHHHHhcccCCCcCCCEEEEEecCCCCccEEEEEEcCCCChhhhCccHHHHHHHHHHH-cCCCCCCceEEEEeCCcc
Confidence 4689999999999999999999998764468999999999999999999999999999999 77663 358999999999
Q ss_pred EEEEEeeCceEEEEcCCCccCCCCCCCccccCccccccccceeeCCeeEEEEEEEcCCCeEEEEeccCCcccccchhhHh
Q 017920 183 IVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLA 262 (364)
Q Consensus 183 l~v~v~~~g~v~V~mg~p~~~~~~ip~~~~~~~~~~~l~~~l~i~~~~~~~~~Vs~GnpH~Vv~v~~~~~~~~l~~~~l~ 262 (364)
+.+++..++.++|+|++|.|.+.++|...........+...+.+.+..+++.+|+|||||+|+++++.. .++..++.
T Consensus 90 i~~~v~~~~~v~V~mg~p~~~~~~ip~~~~~~~~~~~~~~~~~i~~~~~~~~~Vs~GnPH~VifV~~~~---~~~~~~~~ 166 (267)
T PLN02536 90 IIPEMQADGQVKVDMGEPILKGPEVPTKLAATKDGAVVQAELDVDGKTWLVTCVSMGNPHCVTFGEKEL---KVDDLPLE 166 (267)
T ss_pred EEEEEeCCCEEEEeccCcccccccCcccccccccccceeeEEeeCCcEEEEEEEECCCCCEEEEECCcc---ccCcCChH
Confidence 999986556799999999998888875210001111122334455556788899999999999998211 28888999
Q ss_pred hhCcccccCCCCCCceeEEEEEEeCCCeEEEEEeeCCCCCCCCchhhHHHHHHHHHHhCCCCCceEEEccCccEEEEEee
Q 017920 263 EIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKE 342 (364)
Q Consensus 263 ~lg~~le~~~~fp~~~Nv~fv~v~~~~~i~~R~fErGvgEt~ACGTGa~A~a~aa~~~g~~~~~~~V~~~GG~L~V~~~~ 342 (364)
++|+.+++|+.||+++||+|+++.++++|++||||||+|||+|||||+||+|++++++|+.+..+.|.+|||.|.|+|.+
T Consensus 167 ~~g~~i~~~~~FP~~~NV~f~~v~~~~~i~~rt~ERGvg~TlACGTGacA~a~~a~~~g~~~~~v~V~~~GG~L~i~~~~ 246 (267)
T PLN02536 167 KIGPKFEHHEMFPARTNTEFVQVVSRSHLKMRVWERGAGATLACGTGACALVVAAVLEGRADRNCTVDLPGGPLEIEWRE 246 (267)
T ss_pred HhChhccccCCCCCCcEEEEEEEcCCCEEEEEEeccCCchhhccCccHHHHHHHHHHhCCCCCcEEEEcCCcEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999964
Q ss_pred cCCeEEEEeceEEEEEEEEEe
Q 017920 343 EDNHVYMTGPAEVVFYGSVLL 363 (364)
Q Consensus 343 ~~~~V~i~G~A~~V~~G~i~i 363 (364)
++++|+|+|||++||+|++.+
T Consensus 247 ~~~~v~m~Gpa~~v~~g~~~~ 267 (267)
T PLN02536 247 SDNHIYMTGPAELVFYGEIRL 267 (267)
T ss_pred CCceEEEEeCeEEEEEEEEEC
Confidence 345799999999999999864
No 4
>TIGR00652 DapF diaminopimelate epimerase.
Probab=100.00 E-value=2.6e-65 Score=486.47 Aligned_cols=266 Identities=52% Similarity=0.923 Sum_probs=231.4
Q ss_pred eEEEeeeCCCCcEEEEeCCCCCCCCCCHHHHHHhhhccCCcccceEEEEecCCCCCcEEEEEEeCCCCcCCCcchhHHHH
Q 017920 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCF 158 (364)
Q Consensus 79 i~F~K~~g~GNdfvvid~~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~~~~ad~~mRiFnpDGsE~emCGNgtrc~ 158 (364)
|+|+||||+||||||||+++... ..+++++++||+|++|||+||++||.|.++.+||+||||||||||++||||||||+
T Consensus 1 ~~f~K~~g~gNdfviid~~~~~~-~~~~~~~~~l~~r~~~ig~d~~~fv~~~~~~ad~~~r~Fnpdg~e~~~CGh~t~~~ 79 (268)
T TIGR00652 1 MRFSKMHGLGNDFVLVDDFDAEL-VFEPEFVRQVCDRHFGIGADGVLFVEPGSPEADYKMRIFNSDGSEAEMCGNGIRCF 79 (268)
T ss_pred CcEEEEecCCCcEEEEECCCCCC-CCCHHHHHHhcccCccccccEEEEEcCCCCCccEEEEEEeCCCCHHHhCcCcHHHH
Confidence 57999999999999999987542 24578899999999999999999998744678999999999999999999999999
Q ss_pred HHHHHHHccCCCCcEEEEEeCCeeEEEEEeeCceEEEEcCCCccCCCCCCCccccCccccccccceeeC--CeeEEEEEE
Q 017920 159 ARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVD--GVKWNVTCV 236 (364)
Q Consensus 159 a~~L~~~~g~~~~~~i~ieT~aG~l~v~v~~~g~v~V~mg~p~~~~~~ip~~~~~~~~~~~l~~~l~i~--~~~~~~~~V 236 (364)
++||++ ++..+++++++||.+|++++++..++.++++|++|.+.+..++.. ...+.+. ...++++++
T Consensus 80 a~~l~~-~~~~~~~~~~~et~~G~v~v~~~~~~~i~v~m~~p~~~~~~~~~~----------~~~~~l~~~~~~~~~~~v 148 (268)
T TIGR00652 80 AKFVYE-HGLVNKKDISVETLAGLIVLEVKSENKVKVDMGEPNFKPAEIPLT----------VWKFEEPEVGLFGEILAV 148 (268)
T ss_pred HHHHHH-cCCCCCCeEEEEeCCCcEEEEEecCCEEEEECCCCccccccCccc----------cccccccccccEeeEEEE
Confidence 999999 776666789999999999999866557999999998876544421 0111111 124788999
Q ss_pred EcCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEeCCCeEEEEEeeCCCCCCCCchhhHHHHHHH
Q 017920 237 SMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVA 316 (364)
Q Consensus 237 s~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~~~~~i~~R~fErGvgEt~ACGTGa~A~a~a 316 (364)
++||||+|++++ +++.+++..+++.+++|+.||+++||+|++..++++|++|+||||+|||+|||||+||+|++
T Consensus 149 stG~ph~vv~v~------~~~~l~~~~~~~~~~~~~~fp~~~nV~~~~~~~~~~i~~R~ferg~get~acGTGa~A~a~a 222 (268)
T TIGR00652 149 DTGNPHLVVFVD------DVEGLNLLILGPLLEYHERFPEGVNVNFVQVKNDDTIKLRTYERGAGETLACGTGACASAAA 222 (268)
T ss_pred ecCCCcEEEEeC------CcCcccHHHhccccccCCCCCCCeEEEEEEECcCCEEEEEEecCCCCcccccHHHHHHHHHH
Confidence 999999999999 77788889999999999999999999999988888999999999999999999999999999
Q ss_pred HHHhCCCCCceEEEccCccEEEEEeecCCeEEEEeceEEEEEEEEEe
Q 017920 317 AVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363 (364)
Q Consensus 317 a~~~g~~~~~~~V~~~GG~L~V~~~~~~~~V~i~G~A~~V~~G~i~i 363 (364)
++++|+.+..++|.++||.|.|+|.. +++|+|+|+|++|++|++++
T Consensus 223 ~~~~g~~~~~~~v~~~~G~l~v~~~~-~g~i~l~G~a~~v~~G~i~~ 268 (268)
T TIGR00652 223 ALKLGGTPKKVTVHLPGGELEIEWKE-DGHVYMTGPAVLVFDGELFL 268 (268)
T ss_pred HHHhCCCCCCEEEEcCCCEEEEEEEC-CCcEEEEeCCEEEEEEEEeC
Confidence 99999887779999999999999974 34799999999999999874
No 5
>PRK00450 dapF diaminopimelate epimerase; Provisional
Probab=100.00 E-value=5.6e-62 Score=464.57 Aligned_cols=272 Identities=52% Similarity=0.946 Sum_probs=231.8
Q ss_pred cceEEEeeeCCCCcEEEEeCCCCCCCCCCHHHHHHhhhccCCcccceEEEEecC-CCCCcEEEEEEeCCCCcCCCcchhH
Q 017920 77 GFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPG-VNGTDYTMRIFNSDGSEPEMCGNGV 155 (364)
Q Consensus 77 ~~i~F~K~~g~GNdfvvid~~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~-~~~ad~~mRiFnpDGsE~emCGNgt 155 (364)
|+|+|+||||+||||||||++.. ...++++++||+|++|||+||++||.++ ++.+||+||||||||||++||||||
T Consensus 1 ~~~~f~k~~~~gNdf~~~~~~~~---~~~~~~~~~~~~r~~gig~det~Fv~~~~~~~ad~~~R~Ftp~gsEv~~CGHat 77 (274)
T PRK00450 1 MKMKFTKMHGLGNDFVVIDARTQ---ELTPELARKLCDRHFGIGADGLLLVEPPSSPGADFRMRIFNADGSEAEMCGNGA 77 (274)
T ss_pred CCceEEEEecCCCCEEEEeCCCC---cCcHHHHHHhhccCCccCCCeEEEEccCCCCCCCEEEEEEECCCCHHHcCcchH
Confidence 57999999999999999999865 2457889999999999999999999864 4578999999999999999999999
Q ss_pred HHHHHHHHHHccCCCCcEEEEEeCCeeEEEEEeeCceEEEEcCCCccCCCCCCCccccCccccccccceeeCCeeEEEEE
Q 017920 156 RCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC 235 (364)
Q Consensus 156 rc~a~~L~~~~g~~~~~~i~ieT~aG~l~v~v~~~g~v~V~mg~p~~~~~~ip~~~~~~~~~~~l~~~l~i~~~~~~~~~ 235 (364)
||++++|.+ .+...++++.++|.+|++++++..++.++++|+.|.+....++.. . .+.+...+.+.+..++++.
T Consensus 78 ~~~a~~L~~-~g~~~~~~~~~~t~~G~l~v~~~~~~~i~~~~~~P~~~~~~~~~~----~-~~~l~~~l~~~~~~~~~~~ 151 (274)
T PRK00450 78 RCFARFLYE-KGLTNKTEIRVETLAGIIEAEVEDDGLVTVDMGEPRFEPAEIPLA----E-EDVIEKEYILGGQTVEVTA 151 (274)
T ss_pred HHHHHHHHH-cCCCCCCeEEEEeCCceEEEEEecCCEEEEECCCCccCcccCccc----c-ccccceeeeeCCcEEEEEE
Confidence 999999999 777666689999999999999865557899999998865444321 1 1112233443344567889
Q ss_pred EEcCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEeCCCeEEEEEeeCCCCCCCCchhhHHHHHH
Q 017920 236 VSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315 (364)
Q Consensus 236 Vs~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~~~~~i~~R~fErGvgEt~ACGTGa~A~a~ 315 (364)
+++|+||+|++++ +++..++..++|.++.+..||.++|+.++.+.+++++++|+||||+|||++||||+||+|+
T Consensus 152 v~~G~~~lvv~v~------~~~~~~l~~l~pd~~~~~~~~~~~nv~~~~~~~~~~~~~R~F~~gv~Ed~a~GTg~~a~a~ 225 (274)
T PRK00450 152 VSMGNPHAVIFVD------DVDAADVEELGPLLENHPRFPEGVNVNFVQVVDRDHIRLRVYERGVGETLACGTGACAAAV 225 (274)
T ss_pred EECCCCcEEEEeC------CCCcCchhHhchhcccCCCCCCCeEEEEEEEccCCEEEEEEecCCCCcccccccchHHHHH
Confidence 9999999999999 5555677899999998888999999999988777789999999999999999999999999
Q ss_pred HHHHhCCCCCceEEEccCccEEEEEeecCCeEEEEeceEEEEEEEEEeC
Q 017920 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364 (364)
Q Consensus 316 aa~~~g~~~~~~~V~~~GG~L~V~~~~~~~~V~i~G~A~~V~~G~i~i~ 364 (364)
|++++|+....+++.+|||.|.|+++. +++|+|+|+|+++++|+|.+.
T Consensus 226 ~~~~~g~~~~~~~v~~r~G~l~v~~~~-~~~V~i~G~a~~v~~G~i~~~ 273 (274)
T PRK00450 226 AAIRLGLLDRKVTVHLPGGDLTIEWKG-DGHVYMTGPATLVFDGEIDLE 273 (274)
T ss_pred HHHHhCCCCCcEEEEcCCCEEEEEEEC-CCcEEEEeCcEEEEEEEEEec
Confidence 999988875568999999999999963 258999999999999999863
No 6
>TIGR00654 PhzF_family phenazine biosynthesis protein PhzF family. Members of this family show a distant global similarity to diaminopimelate epimerases, which can be taken as the outgroup. One member of this family has been shown to act as an enzyme in the biosynthesis of the antibiotic phenazine in Pseudomonas aureofaciens. The function in other species is unclear.
Probab=100.00 E-value=2.3e-47 Score=367.93 Aligned_cols=261 Identities=18% Similarity=0.204 Sum_probs=195.8
Q ss_pred EEeeeCCCCcEEEEeCCCCCCCCCCHHHHHHhhhccCCcccceEEEEecC-CCCCcEEEEEEeCCCCcCCCcchhHHHHH
Q 017920 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPG-VNGTDYTMRIFNSDGSEPEMCGNGVRCFA 159 (364)
Q Consensus 81 F~K~~g~GNdfvvid~~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~-~~~ad~~mRiFnpDGsE~emCGNgtrc~a 159 (364)
|+|+|+.||||+||+..+ .+++++|++||+| +|+||++||.++ ...+||+|||||| |+|++||||||||++
T Consensus 11 Ft~~~~~GN~~~Vv~~~~----~l~~~~mq~iA~~---~~~~et~Fv~~~~~~~~~~~~R~Fnp-g~E~~~CGh~tl~aa 82 (297)
T TIGR00654 11 FTSQPFMGNPAAVVNFAE----ILSEEEMQAIANE---TNYSETTFLLKPSSEKYDYRLRIFTP-RSELPFAGHPTIGSC 82 (297)
T ss_pred ccCCCCCCCceEEEcCCC----CCCHHHHHHHHHH---hCCCceEEEcCCCCCCCceEEEEECC-CCccCcCCchHHHHH
Confidence 999999999999887653 3679999999998 589999999864 3567899999999 899999999999999
Q ss_pred HHHHHHccCC-CCcEEEEEeCCeeEEEEEee-Cce--EEEEcCCCccCCCCCCCccccCccccccccceeeC----CeeE
Q 017920 160 RFIAELENLN-GKQSFTVHTGAGLIVPEIQD-DGK--VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVD----GVKW 231 (364)
Q Consensus 160 ~~L~~~~g~~-~~~~i~ieT~aG~l~v~v~~-~g~--v~V~mg~p~~~~~~ip~~~~~~~~~~~l~~~l~i~----~~~~ 231 (364)
++|.+ .+.. .++.+.++|++|++++++.. ++. ++|+|+.|.+.+.+++.. .+ +...+.+. ...+
T Consensus 83 ~~l~~-~~~~~~~~~~~~et~aG~v~v~~~~~~~~~~i~v~~~~p~~~~~~~~~~------~~-~~~~lg~~~~~~~~~~ 154 (297)
T TIGR00654 83 YALLE-FTKLTTATTLVQECKAGAVPVTINEKNGDLRISLEQPMPDFEPISGEMR------AD-LAKALGLTEDDFIKGL 154 (297)
T ss_pred HHHHH-cCCCCCCccEEEEcCceEEEEEEEecCCcEEEEEECCCCcccCCCchhH------HH-HHHHhCCChHHhcccC
Confidence 99998 6654 35679999999999999964 333 899999999877544420 11 11223222 2246
Q ss_pred EEEEEEcCCCeEEEEeccCCcccccch--hhH---hhhCcccccCCCCCCceeEEEEEEeCCCeEEEEEeeCCC--CCCC
Q 017920 232 NVTCVSMGNPHCVTFGTKEGQNLKVDK--LNL---AEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGA--GATL 304 (364)
Q Consensus 232 ~~~~Vs~GnpH~Vv~v~~~~~~~~l~~--~~l---~~lg~~le~~~~fp~~~Nv~fv~v~~~~~i~~R~fErGv--gEt~ 304 (364)
+++++++||||+|+++++.+ .++. .|+ .++++.++.+..|+...|. ++.++.++++|+|+|++ +||+
T Consensus 155 ~~~~v~~G~ph~vv~v~~~~---~l~~~~~d~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~R~f~p~~g~~EDp 228 (297)
T TIGR00654 155 PIQLLSTGPEWIVIPLKDEE---ACFNASPNFAMLAHQLKQNDHVGVIPFGPKK---EAAGKNDYHGRMFAPVIGIYEDP 228 (297)
T ss_pred CcEEEecCCCeEEEEeCCHH---HHHhCCCCHHHHHHHHhhcCccEEEEEecCC---CCCCCceEEEEeCCCCCCCcCCC
Confidence 78899999999999998433 1221 133 4445555555444433332 12235579999999965 5999
Q ss_pred CchhhHHHHHHHHHHhCCCCC--ceEEEc-----cCccEEEEEeecCC---eEEEEeceEEEEEEEEEe
Q 017920 305 ACGTGACAVVVAAVLEGHAER--RCTVDL-----PGGPLDIEWKEEDN---HVYMTGPAEVVFYGSVLL 363 (364)
Q Consensus 305 ACGTGa~A~a~aa~~~g~~~~--~~~V~~-----~GG~L~V~~~~~~~---~V~i~G~A~~V~~G~i~i 363 (364)
|||||+||++.|+..++..+. .++|+| |+|.|.|+|..+++ .|+|+|+|++|++|++++
T Consensus 229 atGSa~~ala~~l~~~~~~~~~~~~~v~QG~~~~R~g~l~v~~~~~~~~~~~v~i~G~a~~v~~G~i~~ 297 (297)
T TIGR00654 229 VTGSGSGALGAYLQHVYKNEKTHDITIEQGGALGRDGLMEATVKKEGDNSTKVYIAGTAVTVIDGKIKI 297 (297)
T ss_pred cccHHHHHHHHHHHHcCCCCCCceEEEECccCcCCCeEEEEEEEecCCcEEEEEEcCEEEEEEEEEEEC
Confidence 999999999988887775443 477773 23799999975433 799999999999999975
No 7
>COG0384 Predicted epimerase, PhzC/PhzF homolog [General function prediction only]
Probab=100.00 E-value=5.9e-34 Score=271.92 Aligned_cols=260 Identities=19% Similarity=0.245 Sum_probs=188.4
Q ss_pred EEeeeCCCCcEEEEeCCCCCCCCCCHHHHHHhhhccCCcccceEEEEecCCCCCcEEEEEEeCCCCcCCCcchhHHHHHH
Q 017920 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFAR 160 (364)
Q Consensus 81 F~K~~g~GNdfvvid~~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~~~~ad~~mRiFnpDGsE~emCGNgtrc~a~ 160 (364)
|++-...||+--||...+ .+++++||+|+.. ++.+++.||.++++.+||++|||||++ |++||||+|+++++
T Consensus 12 Ft~~~~~GNp~aVv~~a~----~Lsd~~MQ~IA~e---~n~SET~Fv~~~~~~~~~rlR~FTP~~-Evpf~GHaTlga~~ 83 (291)
T COG0384 12 FTSKPFGGNPLAVVLDAD----GLSDEQMQAIARE---FNLSETAFVLPPDDPADARLRIFTPTT-EVPFAGHATLGAAH 83 (291)
T ss_pred ecCCCCCCCceEEEeCCC----CCCHHHHHHHHHH---hCCceeEEEcCCCCcCceEEEEeCCCc-ccccCCCHHHHHHH
Confidence 888899999996654333 4789999999986 789999999988544799999999986 99999999999988
Q ss_pred HHHHHccCC-CCcEEEEEeCCeeEEEEEeeCceEEEEcCCCccCCCCCCCccccCccccccccceeeC----CeeEEEEE
Q 017920 161 FIAELENLN-GKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVD----GVKWNVTC 235 (364)
Q Consensus 161 ~L~~~~g~~-~~~~i~ieT~aG~l~v~v~~~g~v~V~mg~p~~~~~~ip~~~~~~~~~~~l~~~l~i~----~~~~~~~~ 235 (364)
+|.+ .+.. ....+++||++|++++++..++. +..|.+|.+.+..... .+.+.+.+.|.+. ...+++++
T Consensus 84 ~l~~-~~~~~~~~~~~~e~~aG~v~i~~~~~~~-~~~~~~p~~~~~~~~~-----~~~~~la~aLgL~~~~~~~~~~~~~ 156 (291)
T COG0384 84 VLAE-LGGLSNDTTLTLETKAGLVPVTVERGGG-QAEFDLPQLPPPEEIE-----AEPAELAEALGLEEDDLLPEHPPQV 156 (291)
T ss_pred HHHH-hcCCCccceEEEEeccCeEEEEEEeCCC-ceEEccCCCCCccccc-----cCHHHHHHHcCCChHHcccccCceE
Confidence 8888 5544 34589999999999999986432 1666666654321110 1112234555554 12367899
Q ss_pred EEcCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCC-Ccee-EEEEE--EeCCCeEEEEEeeCCC--CCCCCchhh
Q 017920 236 VSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFP-ARTN-TEFVE--IISPSQLKMRVWERGA--GATLACGTG 309 (364)
Q Consensus 236 Vs~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp-~~~N-v~fv~--v~~~~~i~~R~fErGv--gEt~ACGTG 309 (364)
+|+|.||++|++++.+ . +.++.|.+......+ .+.+ .-|.. ...+..++.|+|.+++ .|||||||+
T Consensus 157 ~stG~~~l~v~l~s~~------a--v~~~~pd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~R~FaP~~Gi~EDPaTGSA 228 (291)
T COG0384 157 VSTGLPDLLVPLESLE------A--LDALRPDFSALTELSAGGGGVYVFAREGAGAEADFHARMFAPGIGVVEDPATGSA 228 (291)
T ss_pred eecCCceEEEEeCCHH------H--HHhcCCCHHHHHhhcccccceEEEEeccCCCCCcEEEEecccccCCCCCCCcchh
Confidence 9999999999999433 2 233334333221111 1111 11221 2345689999998855 599999999
Q ss_pred HHHHHHHHHHhCCCC--CceEEEc-----cCccEEEEEeecC--CeEEEEeceEEEEEEEEEe
Q 017920 310 ACAVVVAAVLEGHAE--RRCTVDL-----PGGPLDIEWKEED--NHVYMTGPAEVVFYGSVLL 363 (364)
Q Consensus 310 a~A~a~aa~~~g~~~--~~~~V~~-----~GG~L~V~~~~~~--~~V~i~G~A~~V~~G~i~i 363 (364)
+|+++.|+..++... ..+.++| |+|.|.++++.++ ..|+|+|.|+.+++|++.+
T Consensus 229 ~~~La~yl~~~~~~~~~~~~~~~QG~~~gR~s~i~~~~~~~~~~~~v~vgG~av~~~~g~l~l 291 (291)
T COG0384 229 AGALAAYLAKHGGLPDKLRLLIEQGTELGRPSRIEVRVDEDGNKEAVRVGGRAVTVAEGELEL 291 (291)
T ss_pred hhHHHHHHHHhCCCCCcccEEEEeccccCCCcEEEEEEeccCCceEEEEeeEEEEEEEEEEeC
Confidence 999999999988864 4677776 6789999997543 4799999999999999875
No 8
>PRK10281 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-34 Score=276.09 Aligned_cols=261 Identities=16% Similarity=0.168 Sum_probs=181.7
Q ss_pred EEeeeCCCCcEEEE-eCCCCCCCCCCHHHHHHhhhccCCcccceEEEEecCCC-CCcEEEEEEeCCCCcCCCcchhHHHH
Q 017920 81 FVKYHGLGNDFILV-DNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCF 158 (364)
Q Consensus 81 F~K~~g~GNdfvvi-d~~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~~~-~ad~~mRiFnpDGsE~emCGNgtrc~ 158 (364)
|+.-...||+.-|| |+. .+++++||+|+.+ ++..++.||.++.. .++|++|||||.+ |++||||||+++
T Consensus 11 Ft~~~f~GNpaaVv~~a~-----~L~~~~Mq~IAre---~n~SETaFv~~~~~~~~~~~lR~FTP~~-Ev~fcGHaTlaa 81 (299)
T PRK10281 11 FTSQPFRGNSAGVVLNAD-----GLSEAQMQLIARE---LNHSETAFLLSSDDSSYDVRVRYFTPTV-EVPICGHATVAA 81 (299)
T ss_pred ccCCCCCCCceEEEcCCC-----CCCHHHHHHHHHH---hCCceEEEEccCCCCCCceEEEEECCCc-ccccCCcHHHHH
Confidence 77788899999555 443 4789999999986 78999999987632 3589999999986 999999999999
Q ss_pred HHHHHHHccCCCCcEEEEEeCCeeEEEEEee-Cce--EEEEcCCCccCCCCCCCccccCccccccccceeeC----CeeE
Q 017920 159 ARFIAELENLNGKQSFTVHTGAGLIVPEIQD-DGK--VKVDMGEPILKASDVPTSLSANKDQSVVKSELDVD----GVKW 231 (364)
Q Consensus 159 a~~L~~~~g~~~~~~i~ieT~aG~l~v~v~~-~g~--v~V~mg~p~~~~~~ip~~~~~~~~~~~l~~~l~i~----~~~~ 231 (364)
+++|.+ .+....+.+.++|++|.+++++.. ++. +++.++.|.+... ++. ...+.+.+.|.+. ...+
T Consensus 82 ~~~L~~-~~~~~~~~~~~~t~~G~v~v~~~~~~~~~~~~~~~~~p~~~~~-~~~-----~~~~~l~~~lgl~~~~i~~~~ 154 (299)
T PRK10281 82 HYVRAT-VLGLGNCTVWQTTLAGILPVDIEKENDDYRISMTQGTPEFEPP-LEG-----ETRAAIINALGLTEDDILPGL 154 (299)
T ss_pred HHHHHH-hCCCCCCcEEEEcCceEEEEEEEecCCeEEEEEecCCCcccCC-CCc-----cCHHHHHHHhCCChHHcCcCC
Confidence 999998 665555679999999999999964 333 4444444544321 110 0111133334432 1247
Q ss_pred EEEEEEcCCCeEEEEeccCCcccccch--hhHhhhCcccccCCCCCCceeEEEEEEe-C-CCeEEEEEeeC--CCCCCCC
Q 017920 232 NVTCVSMGNPHCVTFGTKEGQNLKVDK--LNLAEIGPKFEHHSVFPARTNTEFVEII-S-PSQLKMRVWER--GAGATLA 305 (364)
Q Consensus 232 ~~~~Vs~GnpH~Vv~v~~~~~~~~l~~--~~l~~lg~~le~~~~fp~~~Nv~fv~v~-~-~~~i~~R~fEr--GvgEt~A 305 (364)
|++.+++|+||+++++++.+. +.. .|++++....+... ..++-+ |..-. + ...++.|+|.+ |+.||||
T Consensus 155 p~~~~~~G~~~liv~l~~~~~---l~~~~pd~~~l~~l~~~~~--~~g~~v-~~~~~~~~~~~~~~R~FaP~~Gi~EDPa 228 (299)
T PRK10281 155 PIQVASTGHSKVMIPLKPEVD---LDALSPNLAALTAISKQIG--CNGFFP-FQIRPGKNEILTDGRMFAPAIGIVEDPV 228 (299)
T ss_pred CcEEEecCCceEEEEeCCHHH---HHhCCCCHHHHHHHHHhcC--CcEEEE-EEecCCCCCceEEEeeCCCCCCCccCcc
Confidence 889999999999999995442 222 13344433221111 012111 11111 1 23489999998 6779999
Q ss_pred chhhHHHHHHHHHHhCCCC-----CceEEEc-----cCccEEEEEeecCC---eEEEEeceEEEEEEEEEe
Q 017920 306 CGTGACAVVVAAVLEGHAE-----RRCTVDL-----PGGPLDIEWKEEDN---HVYMTGPAEVVFYGSVLL 363 (364)
Q Consensus 306 CGTGa~A~a~aa~~~g~~~-----~~~~V~~-----~GG~L~V~~~~~~~---~V~i~G~A~~V~~G~i~i 363 (364)
|||++||+|.|+.+.+..+ ..+.++| |+|.|.+++..+++ +|+|+|.|++|.+|+++|
T Consensus 229 TGSA~~aLa~yl~~~~~~~~~~~~~~~~~~QG~~~gR~g~l~~~~~~~~~~~~~V~vgG~av~v~~G~l~~ 299 (299)
T PRK10281 229 TGNANGPMGAYLVHHNLLPHDGKVLRFKGHQGRALGRDGTIEVTVTIRDNQPEKVTISGQAVILFHAEWAI 299 (299)
T ss_pred cchhhhHHHHHHHHcCCCCCCCceeEEEEEcCcCcCCCeEEEEEEEecCCCEEEEEEeeEEEEEEEEEEeC
Confidence 9999999999888877543 2355666 77899999864333 899999999999999975
No 9
>PF02567 PhzC-PhzF: Phenazine biosynthesis-like protein; InterPro: IPR003719 Five genes, phzF, phzA, phzB, phzC and phzD, encode enzymes for phenazine biosynthesis in the biological control bacterium Pseudomonas chlororaphis (also known as Pseudomonas aureofaciens). Protein PhzF is similar to 3-deoxy-D-arabino-heptulosonate-7-phosphate synthases of solanaceous plants. PhzC is responsible for the conversion of phenazine-I-carboxylic acid to 2-hydroxy-phenazine-I-carboxylic acid [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 1U0K_A 1QYA_B 1QY9_D 1SDJ_A 1U1X_A 1U1W_B 1T6K_A 1XUA_A 1XUB_A 1U1V_A ....
Probab=100.00 E-value=2.6e-33 Score=267.66 Aligned_cols=253 Identities=21% Similarity=0.312 Sum_probs=177.0
Q ss_pred EEeeeCCCCcE-EEEeCCCCCCCCCCHHHHHHhhhccCCcccceEEEEecCC-CCCcEEEEEEeCCCCcCCCcchhHHHH
Q 017920 81 FVKYHGLGNDF-ILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGV-NGTDYTMRIFNSDGSEPEMCGNGVRCF 158 (364)
Q Consensus 81 F~K~~g~GNdf-vvid~~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~~-~~ad~~mRiFnpDGsE~emCGNgtrc~ 158 (364)
|+.-...||+. ||++.. .+++++||+|+.+ ++..++.||.++. +.++|++|||||.+ |++||||||+++
T Consensus 4 Ft~~~f~GNp~aVv~~~~-----~l~~~~mq~iA~e---~n~sET~Fv~~~~~~~~~~~vR~FTp~~-Ev~fcGH~tlaa 74 (281)
T PF02567_consen 4 FTDRPFGGNPAAVVLDAD-----GLSDEQMQAIARE---FNLSETAFVLPSTDDEADYRVRIFTPTG-EVPFCGHATLAA 74 (281)
T ss_dssp T-SSTTSSEEEEEEESST-----TS-HHHHHHHHHH---HTSSEEEEEEEESSSTTSEEEEEEESSS-EESSSHHHHHHH
T ss_pred ccCCCCCCCeEEEEEcCC-----CCCHHHHHHHHHH---cCCCeeEEEEeccCCCceeEEEEEeccC-CCCCCCcHHHHH
Confidence 56667789998 555554 4778999999987 7899999998863 57899999999986 999999999999
Q ss_pred HHHHHHHccCCCCcEEEEEeCCeeEEEEEe--e--CceEEEEcCCCccCCCCCCCccccCccccccccceee--CCeeEE
Q 017920 159 ARFIAELENLNGKQSFTVHTGAGLIVPEIQ--D--DGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDV--DGVKWN 232 (364)
Q Consensus 159 a~~L~~~~g~~~~~~i~ieT~aG~l~v~v~--~--~g~v~V~mg~p~~~~~~ip~~~~~~~~~~~l~~~l~i--~~~~~~ 232 (364)
+++|.+ .+...+..+.++|++|.++++.. . ...+++.|..|.+....++ .+.+...+.+ ....++
T Consensus 75 a~~l~~-~~~~~~~~~~~~t~~G~l~v~~~~~~~~~~~~~~~~~~P~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 145 (281)
T PF02567_consen 75 AHALFE-RGGLDPGEIVFETKAGILPVEVIVEGDGGDEVFIEQEQPEFEPVPID--------REELAAALGLLGEDGVLP 145 (281)
T ss_dssp HHHHHH-HTTTSSSEEEEEETTEEEEEEEEEEECEEEEEEEEEEEEEEEEEECH--------HHHHHHHHHCHTSGTSS-
T ss_pred HHHHHH-hccccCceEEEEcCeEEEEEEEeeccccccccceeccCCCCccccch--------hhhhHHHHhhhcccccCc
Confidence 999999 77767789999999999999622 1 2256777887876443221 1111111111 112467
Q ss_pred EEEEEcCCCeEEEEeccCCcccccchh--hHhhhCcccccCCCCCCceeE-EEEEEeCCCeEEEEEeeC--CCCCCCCch
Q 017920 233 VTCVSMGNPHCVTFGTKEGQNLKVDKL--NLAEIGPKFEHHSVFPARTNT-EFVEIISPSQLKMRVWER--GAGATLACG 307 (364)
Q Consensus 233 ~~~Vs~GnpH~Vv~v~~~~~~~~l~~~--~l~~lg~~le~~~~fp~~~Nv-~fv~v~~~~~i~~R~fEr--GvgEt~ACG 307 (364)
++++++|++|+++++++.+ .+..+ |.+++...+.. .+... .+....++.+++.|+|.+ |+.||+|||
T Consensus 146 ~~~~~tg~~~llv~l~~~~---~l~~l~pd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~R~FaP~~Gi~EDpaTG 217 (281)
T PF02567_consen 146 PQVVSTGNPWLLVPLKSAE---ALAALKPDFAALLALCDR-----NGVHVFTFFTDDEDSDFHSRMFAPGIGIPEDPATG 217 (281)
T ss_dssp SEEEESSSEEEEEEBSCHH---HHHH---SHHHHHHHHTT-----CEEEEEEEEEESSTTEEEEEEEEGGGTEEEESS-H
T ss_pred eEEEECCCCcEEEEEeccc---ccccceechhhhcccccc-----cccccccccccCCCceEEEeeeecccCCCCCCCch
Confidence 8899999999999998432 12221 22112111111 11111 122234567899999987 567999999
Q ss_pred hhHHHHHHHHHHhCCCCC--ceEEEc-----cCccEEEEEee-----cCCeEEEEeceEEEEEE
Q 017920 308 TGACAVVVAAVLEGHAER--RCTVDL-----PGGPLDIEWKE-----EDNHVYMTGPAEVVFYG 359 (364)
Q Consensus 308 TGa~A~a~aa~~~g~~~~--~~~V~~-----~GG~L~V~~~~-----~~~~V~i~G~A~~V~~G 359 (364)
|++|+++.|+.+++..+. .+.+.| |+|.|.|+++. +..+|+|+|.|++|++|
T Consensus 218 SA~~~La~yl~~~~~~~~~~~~~i~QG~~~gR~g~i~v~~~~~~~~~~~~~V~vgG~av~v~~G 281 (281)
T PF02567_consen 218 SAAGALAAYLAEKGGKPGSHRFTIEQGQEMGRPGRIEVEVDGDRDGGEDERVRVGGRAVTVMEG 281 (281)
T ss_dssp HHHHHHHHHHHHHTTSSSCEEEEEEEEGGGTS-EEEEEEEEE-EETTEEEEEEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHhCCCCCCceEEEEcccEeCCCEEEEEEEEeeccCCCCceEEEEeEEEEEEeC
Confidence 999999999888887643 456666 77899999864 12489999999999998
No 10
>KOG3033 consensus Predicted PhzC/PhzF-type epimerase [General function prediction only]
Probab=99.96 E-value=1.6e-28 Score=224.82 Aligned_cols=266 Identities=17% Similarity=0.255 Sum_probs=179.7
Q ss_pred eEEEeeeCCCCcEEEEeCCCCCCCCCCHHHHHHhhhccCCcccceEEEEecCC--CCCcEEEEEEeCCCCcCCCcchhHH
Q 017920 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGV--NGTDYTMRIFNSDGSEPEMCGNGVR 156 (364)
Q Consensus 79 i~F~K~~g~GNdfvvid~~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~~--~~ad~~mRiFnpDGsE~emCGNgtr 156 (364)
--|++-...||+..+---.+ .+.+.+..|+|+.. | .-+++.|+.|.. +..+|.+|||||. +|+++|||||+
T Consensus 11 d~ft~~~f~gnpaav~~l~e---ne~d~e~Lq~iA~e-f--NlSET~Fl~pi~~~~~~~f~LRwFTp~-aEvplcGHaTL 83 (286)
T KOG3033|consen 11 DAFTEKAFKGNPAAVCFLEE---NERDDEYLQSIAAE-F--NLSETAFLIPIGGKKCSRFSLRWFTPT-AEVPLCGHATL 83 (286)
T ss_pred eeeecccccCCcceeeeccc---ccccHHHHHHHHHh-h--CcccceeeecCCCCcccceeEEEeccc-ccCcccCcchh
Confidence 34888889999954431112 23556777889974 4 556999987763 5678999999996 79999999999
Q ss_pred HHHHHHHHHccCCCCcEEEEEeCCeeEEEEEeeCceEEEEcCCCccCCCCCCCccccCccccccccceeeCCeeEEEE-E
Q 017920 157 CFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVT-C 235 (364)
Q Consensus 157 c~a~~L~~~~g~~~~~~i~ieT~aG~l~v~v~~~g~v~V~mg~p~~~~~~ip~~~~~~~~~~~l~~~l~i~~~~~~~~-~ 235 (364)
+.+|.|.. +++...+++.++|+.|.++++..+.+. ++|.-|......|... ++...++.+.+... ...++. +
T Consensus 84 asahvlf~-~~~n~n~~l~f~t~sG~l~akrd~~~~--ieln~P~y~~~si~~~---~~~~~~fska~~~~-~i~dv~~~ 156 (286)
T KOG3033|consen 84 ASAHVLFN-EIGNVNKELKFDTLSGILTAKRDELGS--IELNFPEYDTTSINIS---NELEGIFSKAEGPA-FIFDVIKC 156 (286)
T ss_pred hHHHHHHH-hccCCcceEEEEeecceEEEEeccccc--eEEccCcccccccccc---chHHHHHHHhhCCc-eeccchhc
Confidence 99999999 766667889999999999999865554 4555555433333211 11222233332211 111222 2
Q ss_pred EEcCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCC-CceeEEEEEEeC-CCeEEEEEeeC--CCCCCCCchhhHH
Q 017920 236 VSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFP-ARTNTEFVEIIS-PSQLKMRVWER--GAGATLACGTGAC 311 (364)
Q Consensus 236 Vs~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp-~~~Nv~fv~v~~-~~~i~~R~fEr--GvgEt~ACGTGa~ 311 (364)
+..+.-.++|.+++.....+++.. -..+..+...| +++-+.|+-..+ +.+..+|.|.+ ||.|||+||||+|
T Consensus 157 ~~~~p~~liVvl~~~~t~~elep~-----~~d~~di~~~p~~~~~v~~~g~~g~~~dy~~RyFAP~~GVnEDPvtGSa~c 231 (286)
T KOG3033|consen 157 VTPTPRKLIVVLDPWETVFELEPN-----RIDISDISTCPNNGMIVTFAGSSGSPYDYESRYFAPWVGVNEDPVTGSAHC 231 (286)
T ss_pred cCCCCceEEEEeCCcceeeecChh-----hhhhhhhhcCCCCceEEEEecCCCCCCceEeeeccccccccCCCCCCceee
Confidence 323334677777754433333321 11111121233 234555554333 56799999998 8889999999999
Q ss_pred HHH-HHHHHhCCCC-CceEEE-ccCccEEEEEeecCCeEEEEeceEEEEEEEEEe
Q 017920 312 AVV-VAAVLEGHAE-RRCTVD-LPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363 (364)
Q Consensus 312 A~a-~aa~~~g~~~-~~~~V~-~~GG~L~V~~~~~~~~V~i~G~A~~V~~G~i~i 363 (364)
|++ +|...+|+.+ ..++.. .|||.+.|.++.+..+|.|.|+|++|.+|+|.+
T Consensus 232 aL~~yws~~~~k~~~~afqas~~Rgg~~rv~l~~ea~rV~l~G~avtVl~G~i~v 286 (286)
T KOG3033|consen 232 ALGPYWSLILGKKDFYAFQASPTRGGLFRVSLKKEAQRVILNGGAVTVLRGEILV 286 (286)
T ss_pred ehHHHHHHHcCccceeeeeecccCCcEEEEEEcCCceEEEecCCcEEEEeeEEeC
Confidence 999 5666788877 468888 899999999986555999999999999999864
No 11
>PF01678 DAP_epimerase: Diaminopimelate epimerase; InterPro: IPR001653 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Two lysine biosynthesis pathways evolved separately in organisms, the diaminopimelic acid (DAP) and aminoadipic acid (AAA) pathways. The DAP pathway synthesizes L-lysine from aspartate and pyruvate, and diaminopimelic acid is an intermediate. This pathway is utilised by most bacteria, some archaea, some fungi, some algae, and plants. The AAA pathway synthesizes L-lysine from alpha-ketoglutarate and acetyl coenzyme A (acetyl-CoA), and alpha-aminoadipic acid is an intermediate. This pathway is utilised by most fungi, some algae, the bacterium Thermus thermophilus, and probably some archaea, such as Sulfolobus, Thermoproteus, and Pyrococcus. No organism is known to possess both pathways []. There four known variations of the DAP pathway in bacteria: the succinylase, acetylase, aminotransferase, and dehydrogenase pathways. These pathways share the steps converting L-aspartate to L-2,3,4,5- tetrahydrodipicolinate (THDPA), but the subsequent steps leading to the production of meso-diaminopimelate, the immediate precursor of L-lysine, are different []. The succinylase pathway acylates THDPA with succinyl-CoA to generate N-succinyl-LL-2-amino-6-ketopimelate and forms meso-DAP by subsequent transamination, desuccinylation, and epimerization. This pathway is utilised by proteobacteria and many firmicutes and actinobacteria. The acetylase pathway is analogous to the succinylase pathway but uses N-acetyl intermediates. This pathway is limited to certain Bacillus species, in which the corresponding genes have not been identified. The aminotransferase pathway converts THDPA directly to LL-DAP by diaminopimelate aminotransferase (DapL) without acylation. This pathway is shared by cyanobacteria, Chlamydia, the archaeon Methanothermobacter thermautotrophicus, and the plant Arabidopsis thaliana. The dehydrogenase pathway forms meso-DAP directly from THDPA, NADPH, and NH4 _ by using diaminopimelate dehydrogenase (Ddh). This pathway is utilised by some Bacillus and Brevibacterium species and Corynebacterium glutamicum. Most bacteria use only one of the four variants, although certain bacteria, such as C. glutamicum and Bacillus macerans, possess both the succinylase and dehydrogenase pathways. This entry represents diaminopimelate epimerase (5.1.1.7 from EC), which catalyses the isomerisation of L,L-dimaminopimelate to meso-DAP in the biosynthetic pathway leading from aspartate to lysine. It is a member of the broader family of PLP-independent amino acid racemases. This enzyme is a monomeric protein of about 30 kDa consisting of two domains which are homologus in structure though they share little sequence similarity []. Each domain consists of mixed beta-sheets which fold into a barrel around the central helix. The active site cleft is formed from both domains and contains two conserved cysteines thought to function as the acid and base in the catalytic reaction []. Other PLP-independent racemases such as glutamate racemase have been shown to share a similar structure and mechanism of catalysis.; GO: 0008837 diaminopimelate epimerase activity, 0009089 lysine biosynthetic process via diaminopimelate; PDB: 2OTN_A 3FVE_A 2Q9J_A 2GKJ_A 1GQZ_A 2Q9H_A 1BWZ_A 2GKE_A 3EKM_C 3EJX_D ....
Probab=99.93 E-value=8.6e-26 Score=190.23 Aligned_cols=119 Identities=42% Similarity=0.704 Sum_probs=106.0
Q ss_pred EEeeeCCCCcEEEEeCCCCCCCCCCHHHHHHhhhccCCcccceEEEEecCCCCCcEEEEEEeCCCCcCCCcchhHHHHHH
Q 017920 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFAR 160 (364)
Q Consensus 81 F~K~~g~GNdfvvid~~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~~~~ad~~mRiFnpDGsE~emCGNgtrc~a~ 160 (364)
|+||||+||||+++|..... ....++.+++||+|++++|+||++|+... +.++++|||||+||+|..+||||+||+++
T Consensus 1 F~k~~G~ph~vi~vd~~~~~-~~~~~~~~~~~~~~~~~~~~dnv~fv~~~-~~~~~~~r~~n~~g~et~aCGnG~~~~a~ 78 (121)
T PF01678_consen 1 FAKMHGNPHDVIFVDDREEE-DDLDSELARAICDRHFFPGGDNVNFVEIS-DDADIRMRIFNRDGSETLACGNGCRCAAA 78 (121)
T ss_dssp EEEECSSEEEEEEEETTTCS-STCCHHHHHHHHTTTTSTT-SEEEEEEEE-CTTEEEEEEEETTSBEESTTHHHHHHHHH
T ss_pred CEEEeCCCcEEEEEcCcccc-cccchhhhhhhhccccCCcccceEEEEEe-cCCcEEEEEEECCCCeeeecCcHHHHHHH
Confidence 99999999999999998764 23457889999999999999999999864 67899999999999999999999999999
Q ss_pred HHHHHccCCCCcEEEEEeCCeeEEEEEeeCce-EEEEcCCCcc
Q 017920 161 FIAELENLNGKQSFTVHTGAGLIVPEIQDDGK-VKVDMGEPIL 202 (364)
Q Consensus 161 ~L~~~~g~~~~~~i~ieT~aG~l~v~v~~~g~-v~V~mg~p~~ 202 (364)
|+.+ .+...+++++++|.+|.+.+++..++. +.+.||+|.+
T Consensus 79 ~~~~-~~~~~~~~v~v~t~gG~l~v~~~~~~~~~~v~~G~a~~ 120 (121)
T PF01678_consen 79 YLLE-GGIVGKDEVTVETPGGILRVEVDEDGNNVVVLMGPARF 120 (121)
T ss_dssp HHHH-TTSSSSSEEEEEETTEEEEEEEETTSSSEEEEEEEEEE
T ss_pred HHHH-CCCCcceEEEEEeCCcEEEEEEEcCCCEEEEECCCCEE
Confidence 9999 776667899999999999999988766 8999999864
No 12
>PRK13969 proline racemase; Provisional
Probab=99.91 E-value=3.4e-22 Score=194.84 Aligned_cols=268 Identities=21% Similarity=0.315 Sum_probs=178.6
Q ss_pred ceEEEeeeCCCCcE-EEEeCCCCCCCCCC-HH-----------HHHHhhhccCC-cccceEEEEecCCCCCcEEEEEEeC
Q 017920 78 FLHFVKYHGLGNDF-ILVDNRNSTEPRIT-PE-----------QAAKLCDRNFG-IGADGVIFAMPGVNGTDYTMRIFNS 143 (364)
Q Consensus 78 ~i~F~K~~g~GNdf-vvid~~~~~~~~~~-~~-----------~~~~lcdR~~G-IGaDgvlfV~p~~~~ad~~mRiFnp 143 (364)
.++-..+|-.|+++ ||++.... .+..+ .+ +-+.|+.+-.| -.--|.+++.|.++++|+.|.||+.
T Consensus 6 ~~~~id~Ht~GEp~Riv~~G~p~-l~g~t~~ek~~~~~~~~D~lR~~L~~EPRGh~~m~g~ll~pp~~~~Ad~gvif~~~ 84 (334)
T PRK13969 6 SIQTIDSHTMGEPTRIVVGGLPK-IPGKTMAEKKEYLEENNDSLRTALMSEPRGHNDMFGSIYTEPADETADFGIIFMDG 84 (334)
T ss_pred eEEEEEccCCCCCEEEEecCCCC-CCCCCHHHHHHHHHHhHHHHHHHhhcCCCCCCccEEEEEeCCCCCCCCEEEEEEeC
Confidence 48889999999999 77755432 11111 11 12344433332 3344666665555679999999977
Q ss_pred CCCcCCCcchhHHHHHHHHHHHccCCCCc----EEEEEeCCeeEEEEEee-Cce---EEEEcCCCccCCC-CCCCccccC
Q 017920 144 DGSEPEMCGNGVRCFARFIAELENLNGKQ----SFTVHTGAGLIVPEIQD-DGK---VKVDMGEPILKAS-DVPTSLSAN 214 (364)
Q Consensus 144 DGsE~emCGNgtrc~a~~L~~~~g~~~~~----~i~ieT~aG~l~v~v~~-~g~---v~V~mg~p~~~~~-~ip~~~~~~ 214 (364)
+ +..+||||||||++.+|.+ .|+++.+ +++|||.+|++.+++.. ++. +++ |+.|.|... ++.
T Consensus 85 ~-gy~~MCGhgtI~vat~l~e-~G~v~~~~~~~~v~ieTPaGlV~a~~~~~~g~v~~Vs~-~nVPsf~~~~d~~------ 155 (334)
T PRK13969 85 G-GYLNMCGHGSIGAATCAVE-TGIVKVEEPYTHIKLEAPAGMINARVKVEDGKAKEVSI-VNVPAFLYKKDVE------ 155 (334)
T ss_pred C-cccccccChHHHHHHHHHH-cCCcCCCCCceeEEEECCceEEEEEEEEcCCeEEEEEE-EeeecchhhcCCe------
Confidence 5 4999999999999999999 8877543 69999999999998863 443 566 888888553 111
Q ss_pred ccccccccceeeCCe-eEEEEEEEcCCCeEEEEeccCCccc-ccchhhHhhhCccccc---------CCCCCCceeEEEE
Q 017920 215 KDQSVVKSELDVDGV-KWNVTCVSMGNPHCVTFGTKEGQNL-KVDKLNLAEIGPKFEH---------HSVFPARTNTEFV 283 (364)
Q Consensus 215 ~~~~~l~~~l~i~~~-~~~~~~Vs~GnpH~Vv~v~~~~~~~-~l~~~~l~~lg~~le~---------~~~fp~~~Nv~fv 283 (364)
+.+.+. .+.+.+..-|+...++-.++-.-.. ..+..++..+|+.|+. |+.||+..|+.++
T Consensus 156 ---------v~vp~~G~v~~Dia~GG~~yaiVda~~lG~~v~~~~~~~L~~~g~~I~~a~~~~~~~~HP~~p~~~~v~~v 226 (334)
T PRK13969 156 ---------IDVPDYGKVTLDISFGGSFFAIVDAEQLGIKISPANSQKLNDLGMKIRHAVNEQIEIKHPVLEHIKTVDLV 226 (334)
T ss_pred ---------EecCCcCcEEEEEEECCEEEEEEEHHHcCCccChhhHHHHHHHHHHHHHHHHhhccCCCCCCCCcCceEEE
Confidence 111110 2344555666666666322110000 2223456777877776 9999999999999
Q ss_pred EEeCCCeEEEE------EeeCCCCCCCCchhhHHHHHHHHHHhCCCCCc--e-EEEccCccEEEEEeec---CC----eE
Q 017920 284 EIISPSQLKMR------VWERGAGATLACGTGACAVVVAAVLEGHAERR--C-TVDLPGGPLDIEWKEE---DN----HV 347 (364)
Q Consensus 284 ~v~~~~~i~~R------~fErGvgEt~ACGTGa~A~a~aa~~~g~~~~~--~-~V~~~GG~L~V~~~~~---~~----~V 347 (364)
++.++.....+ +|++|..++..||||+||-.+.++.+|++... + .-+.-|+....++.+. ++ ..
T Consensus 227 ~~~~~~~~~~~~~rn~vv~~~G~~DRSPcGTGtsArlA~l~a~G~l~~g~~~~~eSiigs~F~~~~~~~~~~g~~~avip 306 (334)
T PRK13969 227 EIYDEAKHPDADYKNVVIFGQGQVDRSPCGTGTSAKMATLYAKGKLKVGEEFVYESIIGTKFKGKILEETKVGEYDAIIP 306 (334)
T ss_pred EEecCCCcccccceeEEEECCCceecCCCcHHHHHHHHHHHHcCCCCCCCceEEecccCceEEEEEEEEEEECCccEEEE
Confidence 98765544434 89999999999999999998888999987642 2 2333455444443321 21 46
Q ss_pred EEEeceEEEEEEEEEeC
Q 017920 348 YMTGPAEVVFYGSVLLN 364 (364)
Q Consensus 348 ~i~G~A~~V~~G~i~i~ 364 (364)
.|+|.|.+.-.-++.+|
T Consensus 307 ~i~G~A~itg~~~~~~d 323 (334)
T PRK13969 307 EITGSAYITGFNQFVID 323 (334)
T ss_pred EEEEEEEEEEEEEEEEC
Confidence 78899988888777664
No 13
>PF01678 DAP_epimerase: Diaminopimelate epimerase; InterPro: IPR001653 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Two lysine biosynthesis pathways evolved separately in organisms, the diaminopimelic acid (DAP) and aminoadipic acid (AAA) pathways. The DAP pathway synthesizes L-lysine from aspartate and pyruvate, and diaminopimelic acid is an intermediate. This pathway is utilised by most bacteria, some archaea, some fungi, some algae, and plants. The AAA pathway synthesizes L-lysine from alpha-ketoglutarate and acetyl coenzyme A (acetyl-CoA), and alpha-aminoadipic acid is an intermediate. This pathway is utilised by most fungi, some algae, the bacterium Thermus thermophilus, and probably some archaea, such as Sulfolobus, Thermoproteus, and Pyrococcus. No organism is known to possess both pathways []. There four known variations of the DAP pathway in bacteria: the succinylase, acetylase, aminotransferase, and dehydrogenase pathways. These pathways share the steps converting L-aspartate to L-2,3,4,5- tetrahydrodipicolinate (THDPA), but the subsequent steps leading to the production of meso-diaminopimelate, the immediate precursor of L-lysine, are different []. The succinylase pathway acylates THDPA with succinyl-CoA to generate N-succinyl-LL-2-amino-6-ketopimelate and forms meso-DAP by subsequent transamination, desuccinylation, and epimerization. This pathway is utilised by proteobacteria and many firmicutes and actinobacteria. The acetylase pathway is analogous to the succinylase pathway but uses N-acetyl intermediates. This pathway is limited to certain Bacillus species, in which the corresponding genes have not been identified. The aminotransferase pathway converts THDPA directly to LL-DAP by diaminopimelate aminotransferase (DapL) without acylation. This pathway is shared by cyanobacteria, Chlamydia, the archaeon Methanothermobacter thermautotrophicus, and the plant Arabidopsis thaliana. The dehydrogenase pathway forms meso-DAP directly from THDPA, NADPH, and NH4 _ by using diaminopimelate dehydrogenase (Ddh). This pathway is utilised by some Bacillus and Brevibacterium species and Corynebacterium glutamicum. Most bacteria use only one of the four variants, although certain bacteria, such as C. glutamicum and Bacillus macerans, possess both the succinylase and dehydrogenase pathways. This entry represents diaminopimelate epimerase (5.1.1.7 from EC), which catalyses the isomerisation of L,L-dimaminopimelate to meso-DAP in the biosynthetic pathway leading from aspartate to lysine. It is a member of the broader family of PLP-independent amino acid racemases. This enzyme is a monomeric protein of about 30 kDa consisting of two domains which are homologus in structure though they share little sequence similarity []. Each domain consists of mixed beta-sheets which fold into a barrel around the central helix. The active site cleft is formed from both domains and contains two conserved cysteines thought to function as the acid and base in the catalytic reaction []. Other PLP-independent racemases such as glutamate racemase have been shown to share a similar structure and mechanism of catalysis.; GO: 0008837 diaminopimelate epimerase activity, 0009089 lysine biosynthetic process via diaminopimelate; PDB: 2OTN_A 3FVE_A 2Q9J_A 2GKJ_A 1GQZ_A 2Q9H_A 1BWZ_A 2GKE_A 3EKM_C 3EJX_D ....
Probab=99.85 E-value=1.1e-20 Score=159.09 Aligned_cols=115 Identities=37% Similarity=0.646 Sum_probs=93.2
Q ss_pred EEEcCCCeEEEEeccCCcccccchhhH--hhhCcccccCCCCCCceeEEEEEEeCCCeEEEEEeeCCCCCCCCchhhHHH
Q 017920 235 CVSMGNPHCVTFGTKEGQNLKVDKLNL--AEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACA 312 (364)
Q Consensus 235 ~Vs~GnpH~Vv~v~~~~~~~~l~~~~l--~~lg~~le~~~~fp~~~Nv~fv~v~~~~~i~~R~fErGvgEt~ACGTGa~A 312 (364)
.+++|+||+++++++. +..+. .++++.+..++.||.+.||.|++..++..+++|+||||.+||++|||| |+
T Consensus 2 ~k~~G~ph~vi~vd~~------~~~~~~~~~~~~~~~~~~~~~~~dnv~fv~~~~~~~~~~r~~n~~g~et~aCGnG-~~ 74 (121)
T PF01678_consen 2 AKMHGNPHDVIFVDDR------EEEDDLDSELARAICDRHFFPGGDNVNFVEISDDADIRMRIFNRDGSETLACGNG-CR 74 (121)
T ss_dssp EEECSSEEEEEEEETT------TCSSTCCHHHHHHHHTTTTSTT-SEEEEEEEECTTEEEEEEEETTSBEESTTHHH-HH
T ss_pred EEEeCCCcEEEEEcCc------ccccccchhhhhhhhccccCCcccceEEEEEecCCcEEEEEEECCCCeeeecCcH-HH
Confidence 4689999999999943 33222 357888888889999999999999999999999999999999999999 66
Q ss_pred HHHHHHHhCC--CCCceEEEccCccEEEEEeecCC-eEEEEeceEEE
Q 017920 313 VVVAAVLEGH--AERRCTVDLPGGPLDIEWKEEDN-HVYMTGPAEVV 356 (364)
Q Consensus 313 ~a~aa~~~g~--~~~~~~V~~~GG~L~V~~~~~~~-~V~i~G~A~~V 356 (364)
+++++++.+. .+..++|.++||.|.|+|..++. .+.+.|+|++|
T Consensus 75 ~~a~~~~~~~~~~~~~v~v~t~gG~l~v~~~~~~~~~~v~~G~a~~V 121 (121)
T PF01678_consen 75 CAAAYLLEGGIVGKDEVTVETPGGILRVEVDEDGNNVVVLMGPARFV 121 (121)
T ss_dssp HHHHHHHHTTSSSSSEEEEEETTEEEEEEEETTSSSEEEEEEEEEE-
T ss_pred HHHHHHHHCCCCcceEEEEEeCCcEEEEEEEcCCCEEEEECCCCEEC
Confidence 6555555444 35689999999999999986555 48899999886
No 14
>PRK13971 hydroxyproline-2-epimerase; Provisional
Probab=99.79 E-value=1.7e-16 Score=154.48 Aligned_cols=266 Identities=18% Similarity=0.207 Sum_probs=157.6
Q ss_pred ceEEEeeeCCCCcE-EEEeCCCCCCCCCC-HHHHHHhhhccCC------------cccceEEEEecC-CCCCcEEEEEEe
Q 017920 78 FLHFVKYHGLGNDF-ILVDNRNSTEPRIT-PEQAAKLCDRNFG------------IGADGVIFAMPG-VNGTDYTMRIFN 142 (364)
Q Consensus 78 ~i~F~K~~g~GNdf-vvid~~~~~~~~~~-~~~~~~lcdR~~G------------IGaDgvlfV~p~-~~~ad~~mRiFn 142 (364)
.+.-.-+|..||++ ||++.... ....+ .+..++|.++.-. -.--| .||.|+ ++++||++||||
T Consensus 5 ~~~~VD~ht~Gep~rVV~~g~p~-l~g~tm~ek~~~~~~e~d~~r~~L~~EPRGh~~m~g-~~l~pp~~~~Ad~gvrfFt 82 (333)
T PRK13971 5 TFFCIDAHTCGNPVRLVAGGGPL-LQGATMSEKRAHFLREYDWIRTGLMFEPRGHDMMSG-SILYPPTRPDCDFAILFIE 82 (333)
T ss_pred eEEEEEecCCCcceeEEECCCCC-CCCcCHHHHHHHHHHHHHHHHHHhhcCCCCCccceE-EEEECCCCCCCCEEEEEEC
Confidence 47788899999999 66666521 11111 2333555543111 11124 455555 467899999999
Q ss_pred CCCCcCCCcchhHHHHHHHHHHHccCCC---CcEEEEEeCCeeEEEEEee-Cce-EEEEcCC-CccCC-CCCCCccccCc
Q 017920 143 SDGSEPEMCGNGVRCFARFIAELENLNG---KQSFTVHTGAGLIVPEIQD-DGK-VKVDMGE-PILKA-SDVPTSLSANK 215 (364)
Q Consensus 143 pDGsE~emCGNgtrc~a~~L~~~~g~~~---~~~i~ieT~aG~l~v~v~~-~g~-v~V~mg~-p~~~~-~~ip~~~~~~~ 215 (364)
|+| |.+||||+|+|++++|.+ .|.++ ...+++||.+|++++++.. ++. .+|.+-. |.|.. .+
T Consensus 83 p~~-e~~mcGH~TIg~a~~L~e-~G~i~~~~~~~~~letpaG~V~V~v~~~~g~v~~v~~~nvpsf~~~~d--------- 151 (333)
T PRK13971 83 TSG-CLPMCGHGTIGTVTAAIE-EGLVTPKTPGKLRLDTPAGLVDIEYEQDGEKVESVRLTNVPSYLAAED--------- 151 (333)
T ss_pred CCc-ccCcCccHHHHHHHHHHH-cCCCCCCCCCeEEEECCcEEEEEEEEEcCCeEEEEEEEccCCchhhCC---------
Confidence 998 999999999999999999 77653 3578999999999998864 333 3444422 23321 11
Q ss_pred cccccccceeeCCe-eEEEEEEEcCCCeEEEEeccCCcccccchh---hHhhhCccc--------c-cCCCCCCceeEEE
Q 017920 216 DQSVVKSELDVDGV-KWNVTCVSMGNPHCVTFGTKEGQNLKVDKL---NLAEIGPKF--------E-HHSVFPARTNTEF 282 (364)
Q Consensus 216 ~~~~l~~~l~i~~~-~~~~~~Vs~GnpH~Vv~v~~~~~~~~l~~~---~l~~lg~~l--------e-~~~~fp~~~Nv~f 282 (364)
..+.+.+. ...+.+.+-|+..+++-.+.-. +.++.. .+.++|..+ + .|+..|+...+.+
T Consensus 152 ------~~v~vp~~G~v~~Dia~GG~~ya~vda~~~g--l~l~~~~~~~l~~~g~~ik~a~~~~~~~~hp~~~~~~~i~~ 223 (333)
T PRK13971 152 ------LEVEIPGLGPLKVDVAYGGNFYAIVEPQENF--PGLDHYSASDILRWSPVLRQALNEKYEFVHPEDPRIRGVSH 223 (333)
T ss_pred ------cEEeCCCcceEEEEEEECCeEEEEEEHHHcC--CccChhHHHHHHHHHHHHHHHHHhhcCCcCCCCCCcCceEE
Confidence 11223221 3567778889988888655211 123222 233334222 1 2443444444555
Q ss_pred EEEeCCC------eEEEEEeeCCCCCCCCchhhHHHHHHHHHHhCCCCC--c-eEEEccCccEEEEEeec---CC----e
Q 017920 283 VEIISPS------QLKMRVWERGAGATLACGTGACAVVVAAVLEGHAER--R-CTVDLPGGPLDIEWKEE---DN----H 346 (364)
Q Consensus 283 v~v~~~~------~i~~R~fErGvgEt~ACGTGa~A~a~aa~~~g~~~~--~-~~V~~~GG~L~V~~~~~---~~----~ 346 (364)
+...++. .-.+-+|..|.-+---||||+||=-+.++..|++.. . +.-+.-|.....++.+. ++ .
T Consensus 224 v~~~~~~~~~~~~~rn~~v~~~g~vDRSPcGTGTsArlA~l~a~G~l~~ge~~~~eSiiGs~F~g~~~~~~~~g~~~avi 303 (333)
T PRK13971 224 VLWTGKPISPGADARNAVFYGDKAIDRSPCGTGTSARMAQLAAKGKLKVGDEFVHESIIGSLFEGRVEAAATVGGRPAIL 303 (333)
T ss_pred EEEEcCCCCcCCCccEEEEECCCceECCCCchhHHHHHHHHHhcCCCCCCCeEEEecccCCcEEEEEEEEEEECCccEEE
Confidence 5443221 122345677764444599999997666777787653 2 22333455444444321 22 4
Q ss_pred EEEEeceEEEEEEEEEeC
Q 017920 347 VYMTGPAEVVFYGSVLLN 364 (364)
Q Consensus 347 V~i~G~A~~V~~G~i~i~ 364 (364)
..|+|.|.+.-..++.+|
T Consensus 304 p~i~G~A~itg~~~~~id 321 (333)
T PRK13971 304 PSIEGWARVTGHNTIFVD 321 (333)
T ss_pred EEEEEEEEEEEEEEEEEC
Confidence 678899988888777664
No 15
>PRK13970 hydroxyproline-2-epimerase; Provisional
Probab=99.75 E-value=3.1e-16 Score=150.86 Aligned_cols=264 Identities=17% Similarity=0.211 Sum_probs=160.4
Q ss_pred ceEEEeeeCCCCcE-EEEeCCCCCCCCCCHHHHHHhhhccCCc---------ccc---eEEEEecCCCCCcEEEEEEeCC
Q 017920 78 FLHFVKYHGLGNDF-ILVDNRNSTEPRITPEQAAKLCDRNFGI---------GAD---GVIFAMPGVNGTDYTMRIFNSD 144 (364)
Q Consensus 78 ~i~F~K~~g~GNdf-vvid~~~~~~~~~~~~~~~~lcdR~~GI---------GaD---gvlfV~p~~~~ad~~mRiFnpD 144 (364)
++.-..+|..||+. ||++....-.-....++++.+.+++-.+ |.| |.+++.|.++++|+.++||+|+
T Consensus 4 ~i~~VDaHt~GeP~rVV~~G~p~l~G~t~~Ek~~~~~~~~d~~R~~l~~EPRG~~~M~gall~pP~~p~Ad~gvif~~~~ 83 (311)
T PRK13970 4 RIQIIDSHTGGEPTRLVVSGFPSLGGGTMAERRDVLAREHDRYRTACILEPRGSDVLVGALLCEPVSPDAAAGVIFFNNS 83 (311)
T ss_pred EEEEEEecCCCCceEEEecCCCCCCCCCHHHHHHHHHHhhChhhheeeeCCCCCccceeeeecCCCCcccCEEEEEEcCC
Confidence 57778899999999 6666653211123356777777642111 222 3344434356889999999999
Q ss_pred CCcCCCcchhHHHHHHHHHHHccCCCCcEEEEEeCCeeEEEEEeeCceEEEEcCCCccCCCCCCCccccCccccccccce
Q 017920 145 GSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSEL 224 (364)
Q Consensus 145 GsE~emCGNgtrc~a~~L~~~~g~~~~~~i~ieT~aG~l~v~v~~~g~v~V~mg~p~~~~~~ip~~~~~~~~~~~l~~~l 224 (364)
| +.+||||+|+|++.+|.+ .|++...+.+|||.+|+++++++.++.|++..- |.|-.. ....+
T Consensus 84 g-~~~mCGH~TIa~~t~l~e-~G~v~~~~~~ieTpaG~v~v~~~~~~~V~f~NV-Psf~~~--------------~d~~v 146 (311)
T PRK13970 84 G-YLGMCGHGTIGVVRTLHH-MGRIGPGVHRIETPVGTVEATLHDDLSVSVRNV-LAYRHA--------------KDVVV 146 (311)
T ss_pred C-cccccccchheeeeeeee-cceecCCcEEEEcCCceEEEEEECCCeEEEEec-chhhhh--------------CCCEE
Confidence 8 999999999999999999 888866667999999999999985545555443 333221 01123
Q ss_pred eeCCe-eEEEEEEEcCCCeEEEEeccCCcccccchh---hHhhhCccccc-------CCCCCCceeEEEEEEeC-CCe--
Q 017920 225 DVDGV-KWNVTCVSMGNPHCVTFGTKEGQNLKVDKL---NLAEIGPKFEH-------HSVFPARTNTEFVEIIS-PSQ-- 290 (364)
Q Consensus 225 ~i~~~-~~~~~~Vs~GnpH~Vv~v~~~~~~~~l~~~---~l~~lg~~le~-------~~~fp~~~Nv~fv~v~~-~~~-- 290 (364)
.+.+. ...+.+.+=|+...++-... ++++.. ++.++|..+.. |+ |+...+.+++..+ +..
T Consensus 147 ~vpg~G~v~~DiayGG~~yaivd~~~----l~l~~~~~~~l~~~g~~i~~a~~~~~~~~--~~~~~i~~v~~~~~~~~~~ 220 (311)
T PRK13970 147 DVPGYGPVKGDIAWGGNWFFLISDHG----QRVAGDNVAALTAYASAVRAGLERAGITG--ANGGEIDHIELFADDPEHD 220 (311)
T ss_pred ECCCCCcEEEEEEeCCeEEEEEcccc----CCCCcccHHHHHHHHHHHHHHHHhhccCC--CCCCcceEEEEecCCCCcC
Confidence 33321 35677788898877775321 122222 33444433321 32 4333455555443 221
Q ss_pred -EEEEEeeCCCCCCCCchhhHHHHHHHHHHhCCCCC--ce-EEEccCccEEEEEee-cCC-eEEEEeceEEEEEEEEEeC
Q 017920 291 -LKMRVWERGAGATLACGTGACAVVVAAVLEGHAER--RC-TVDLPGGPLDIEWKE-EDN-HVYMTGPAEVVFYGSVLLN 364 (364)
Q Consensus 291 -i~~R~fErGvgEt~ACGTGa~A~a~aa~~~g~~~~--~~-~V~~~GG~L~V~~~~-~~~-~V~i~G~A~~V~~G~i~i~ 364 (364)
-.+-+|..|.-+---||||+||=-+.++..|++.. .+ .-+.-|.....++.. .++ ...|+|.|.+.-..++.+|
T Consensus 221 ~rn~vv~~~g~vDRSPcGTGTsArlA~l~a~G~l~~ge~~~~eSiiGs~F~g~i~~~~~~viP~I~G~A~itg~~~~~id 300 (311)
T PRK13970 221 SRSFVLCPGHAYDRSPCGTGTSAKLACLAADGKLAPGVVWRQASVIGSVFSASYAAAEGGIVPTIRGSAHLSAEATLLIE 300 (311)
T ss_pred ceeEEEECCCccccCCCCccHHHHHHHHHHcCCCCCCCeEEEEeccCCcEEEEEEeecCCEEEEEEeEEEEEEEEEEEeC
Confidence 22345667754444599999997666777787653 22 233345444333321 122 4568888888888887764
No 16
>PF05544 Pro_racemase: Proline racemase; InterPro: IPR008794 This family consists of proline racemase (5.1.1.4 from EC) proteins which catalyse the interconversion of L- and D-proline in bacteria []. This family also contains several similar eukaryotic proteins including Q9NCP4 from SWISSPROT a sequence with B-cell mitogenic properties which has been characterised as a co-factor-independent proline racemase [].; GO: 0018112 proline racemase activity; PDB: 1TM0_A 2AZP_A 1W61_B 1W62_A.
Probab=99.54 E-value=5.7e-12 Score=122.63 Aligned_cols=264 Identities=20% Similarity=0.272 Sum_probs=148.9
Q ss_pred EeeeCCCCcE-EEEeCCCCCCCCCC-HHH-----------HHHhhhccCC-cccceEEEEecCCCCCcEEEEEEeCCCCc
Q 017920 82 VKYHGLGNDF-ILVDNRNSTEPRIT-PEQ-----------AAKLCDRNFG-IGADGVIFAMPGVNGTDYTMRIFNSDGSE 147 (364)
Q Consensus 82 ~K~~g~GNdf-vvid~~~~~~~~~~-~~~-----------~~~lcdR~~G-IGaDgvlfV~p~~~~ad~~mRiFnpDGsE 147 (364)
..+|-.|+++ ||+..... .+..+ .+. -+.|+.+-.| -.--|.+++.|.++++|+.+-||+++| =
T Consensus 2 VD~Ht~GEp~RIV~~G~p~-l~G~T~~Ek~~~~~~~~D~lR~~Lm~EPRGh~~M~Gall~pp~~~~Ad~Gvif~~~~g-y 79 (325)
T PF05544_consen 2 VDMHTGGEPTRIVTGGIPD-LPGNTMLEKREYFRENHDHLRRLLMFEPRGHADMYGALLVPPCDPEADFGVIFMHNEG-Y 79 (325)
T ss_dssp EEEEETTEEEEEEEESS----SSSSHHHHHHHHHHH-HHHHHHHHSTTTS-TT-EEEEEE--SSTTSSEEEEEEESSS-C
T ss_pred eeecCCCCCeEEEeCCcCC-CCCCCHHHHHHHHHHhHHHHHHhheeCCCCCCceEEEEEcCCCCCCCCEEEEEEcCCC-C
Confidence 3589999999 77765422 11212 111 2455544443 233355655554578999999999998 7
Q ss_pred CCCcchhHHHHHHHHHHHccCCCC----cEEEEEeCCeeEEEEEee-Cce-EEEEcC-CCccCCCCCCCccccCcccccc
Q 017920 148 PEMCGNGVRCFARFIAELENLNGK----QSFTVHTGAGLIVPEIQD-DGK-VKVDMG-EPILKASDVPTSLSANKDQSVV 220 (364)
Q Consensus 148 ~emCGNgtrc~a~~L~~~~g~~~~----~~i~ieT~aG~l~v~v~~-~g~-v~V~mg-~p~~~~~~ip~~~~~~~~~~~l 220 (364)
.+||||+|+|++.+|.+ .|++.. .+++|||.+|++.+++.- ++. .+|.+- .|.|-.. .
T Consensus 80 ~~McGh~tI~~~t~lve-~G~v~~~~~~t~v~letPaGlV~a~~~~~~g~v~~Vsf~nVPsf~~~--------------~ 144 (325)
T PF05544_consen 80 SPMCGHGTIAVATALVE-TGLVPMKEPETEVRLETPAGLVEATVEVEGGKVESVSFENVPSFVYA--------------L 144 (325)
T ss_dssp -SSTHHHHHHHHHHHHH-TTSS-SECCECEEEEEETTEEEEEEEEETSTSEEEEEEE-S-BEEEE--------------E
T ss_pred CCCcccHHHHHHHHHHH-CCcccCCCCCEEEEEECCCcEEEEEEEEeCCEEEEEEEeeEEeeeEe--------------c
Confidence 79999999999999999 888743 379999999999999875 332 233332 2333111 0
Q ss_pred ccceeeCCe-eEEEEEEEcCCCeEEEEeccCCcccccchh---hHhhhCcccc---------cCCCCCCce---eEEEEE
Q 017920 221 KSELDVDGV-KWNVTCVSMGNPHCVTFGTKEGQNLKVDKL---NLAEIGPKFE---------HHSVFPART---NTEFVE 284 (364)
Q Consensus 221 ~~~l~i~~~-~~~~~~Vs~GnpH~Vv~v~~~~~~~~l~~~---~l~~lg~~le---------~~~~fp~~~---Nv~fv~ 284 (364)
...+.+.+. ...+.+.+-|+..+++-.+... ++++.. .+.++|..+. .|+..|+.- .+.|..
T Consensus 145 d~~v~vpg~G~v~vDiayGG~fyaivda~~lG--l~l~~~~~~~L~~~g~~i~~a~~~~~~v~HP~~~~~~~i~~v~~~~ 222 (325)
T PF05544_consen 145 DVPVEVPGLGTVTVDIAYGGAFYAIVDAAQLG--LELEPENARELIRLGRAIKAALNAQIPVVHPENPDIRGIYGVIFTD 222 (325)
T ss_dssp EEEEEETTTCEEEEEEEESSSEEEEEEGGGCT----SSCCCHHHHHHHHHHHHHHHHHCH---CTC-TTS-SEEEEEEEE
T ss_pred CCEEECCCcccEEEEEEeCCEEEEEEEHHHcC--CCcChhhHHHHHHHHHHHHHHHHhhCCCcCCCccccCceeEEEEec
Confidence 112333322 4667788899988777665321 122222 2333343321 255545432 344444
Q ss_pred EeCCC--e-EEEEEeeCCCCCCCCchhhHHHHHHHHHHhCCCCC--ce-EEEccCccEEEEEeec---CC----eEEEEe
Q 017920 285 IISPS--Q-LKMRVWERGAGATLACGTGACAVVVAAVLEGHAER--RC-TVDLPGGPLDIEWKEE---DN----HVYMTG 351 (364)
Q Consensus 285 v~~~~--~-i~~R~fErGvgEt~ACGTGa~A~a~aa~~~g~~~~--~~-~V~~~GG~L~V~~~~~---~~----~V~i~G 351 (364)
..... . -.+-+|..|.-+---||||++|-.+.++.+|++.. .+ .-+.-|+....++.+. ++ ...|+|
T Consensus 223 ~~~~~~~~~rn~vv~~~g~vDRSPcGTGTsARlA~l~a~G~l~~ge~~~~eSiiGs~F~g~i~~~~~vg~~~avip~I~G 302 (325)
T PF05544_consen 223 PPDDPDAHSRNVVVFGDGQVDRSPCGTGTSARLALLHARGELKPGEPFVHESIIGSRFTGRIVEETEVGGFPAVIPEITG 302 (325)
T ss_dssp EECCCTSEEEEEEEETTTEE-SS--HHHHHHHHHHHHHTTSS-TT-EEEEEETTS-EEEEEEEEEEEETTCEEEEEEEEE
T ss_pred CCCCCCCcccEEEEECCCCeeeCCCchhHHHHHHHHHHCCCCCCCCcEEEecccCceEEEEEEEEEEECCccEEEEEEEE
Confidence 22222 1 22345667754444599999997777788888763 22 2334465544444321 22 477999
Q ss_pred ceEEEEEEEEEeC
Q 017920 352 PAEVVFYGSVLLN 364 (364)
Q Consensus 352 ~A~~V~~G~i~i~ 364 (364)
.|.+.-..++.+|
T Consensus 303 ~A~itG~~~~~~d 315 (325)
T PF05544_consen 303 RAYITGFSQFVLD 315 (325)
T ss_dssp -EEEEEEEEEEE-
T ss_pred EEEEEEEEEEEEc
Confidence 9999888888764
No 17
>COG3938 Proline racemase [Amino acid transport and metabolism]
Probab=99.37 E-value=4.9e-10 Score=105.68 Aligned_cols=269 Identities=20% Similarity=0.260 Sum_probs=159.5
Q ss_pred ceEEEeeeCCCCcE-EEEeCCCCCCCCCC-HHHHHHhhhccC------------CcccceEEEEecCCCCCcEEEEEEeC
Q 017920 78 FLHFVKYHGLGNDF-ILVDNRNSTEPRIT-PEQAAKLCDRNF------------GIGADGVIFAMPGVNGTDYTMRIFNS 143 (364)
Q Consensus 78 ~i~F~K~~g~GNdf-vvid~~~~~~~~~~-~~~~~~lcdR~~------------GIGaDgvlfV~p~~~~ad~~mRiFnp 143 (364)
.+.-...|..||.- +|+-.. .+.+..+ .++.+.+..++. +.--.+-+++.|.++++|+-+-|++|
T Consensus 6 ti~~id~HteGe~grvV~GG~-p~~pg~tm~Eq~~~~~~d~d~lR~~l~~EPRG~~~~~~~lL~Pp~~pda~aa~ii~ep 84 (341)
T COG3938 6 TIHCIDCHTEGEPGRVVVGGV-PPLPGATMWEQRRWFARDHDWLRNFLMFEPRGHDFRSGNLLVPPKRPDADAAVIIMEP 84 (341)
T ss_pred EEEEEccccCCcceeEEEcCC-CCCCCCcHHHHHHHHhcchHHHHHhheeCCCCCcceeeeEecCCCCCCccEEEEEEcc
Confidence 67888899999999 555433 2222222 345555554443 22233555554445789999999999
Q ss_pred CCCcCCCcchhHHHHHHHHHHHccCCC---C-cEEEEEeCCeeEEEEEe-eCce---EEEEcCCCccCCCCCCCccccCc
Q 017920 144 DGSEPEMCGNGVRCFARFIAELENLNG---K-QSFTVHTGAGLIVPEIQ-DDGK---VKVDMGEPILKASDVPTSLSANK 215 (364)
Q Consensus 144 DGsE~emCGNgtrc~a~~L~~~~g~~~---~-~~i~ieT~aG~l~v~v~-~~g~---v~V~mg~p~~~~~~ip~~~~~~~ 215 (364)
+| -.+||||+|+|++..|.+ .|++. + ..+.+||.+|++.++.+ .||+ |++.+- |.|-..
T Consensus 85 s~-~~pMsGsntIc~~T~lle-~G~v~m~eP~t~l~letP~GlV~~~a~crdGk~E~V~l~Nv-Psf~~~---------- 151 (341)
T COG3938 85 SG-CLPMSGSNTICVVTVLLE-SGLVPMQEPETVLRLETPAGLVEATAECRDGKVERVRLRNV-PSFLHR---------- 151 (341)
T ss_pred CC-CCCcCCCCchhhhhHHHH-cCCccCCCCceEEEEecCCcEEEEEEEecCCcEEEEEEEcc-hhhHhh----------
Confidence 98 679999999999999999 89874 3 68999999999999998 6774 666554 333211
Q ss_pred cccccccceeeCCe-eEEEEEEEcCCCeEEEEeccCCcccc-cchhhHhhhCccccc---------CCCCCCceeEEEEE
Q 017920 216 DQSVVKSELDVDGV-KWNVTCVSMGNPHCVTFGTKEGQNLK-VDKLNLAEIGPKFEH---------HSVFPARTNTEFVE 284 (364)
Q Consensus 216 ~~~~l~~~l~i~~~-~~~~~~Vs~GnpH~Vv~v~~~~~~~~-l~~~~l~~lg~~le~---------~~~fp~~~Nv~fv~ 284 (364)
+...+++.+. .+.+.+.+-||...||-.+.....++ -+..++.+++.+++. |+..|+---+.|++
T Consensus 152 ----ld~~vevpglG~l~vDiAYGG~~yaiVd~~~~g~~l~~~~A~~L~~~g~~i~~a~n~~~~f~HPe~p~i~~~s~~~ 227 (341)
T COG3938 152 ----LDASVEVPGLGRLTVDIAYGGNFYAIVDAQANGFDLAPDEAGELVALGVKIRQALNEQLDFVHPENPDIRGVSHCQ 227 (341)
T ss_pred ----cCCeEecCCcceEEEEEeeCceEEEEEehHHcCcccCccchHHHHHhHHHHHHHHhhhcCccCCCCCccCceeEEE
Confidence 1122333322 34566677899888775432111111 112355566655432 44445433466665
Q ss_pred EeC-----CCeEEEEE-eeCCCCCCCCchhhHHHHHHHHHHhCCCC--Cc-eEEEccCccEEEEEee--c-CC----eEE
Q 017920 285 IIS-----PSQLKMRV-WERGAGATLACGTGACAVVVAAVLEGHAE--RR-CTVDLPGGPLDIEWKE--E-DN----HVY 348 (364)
Q Consensus 285 v~~-----~~~i~~R~-fErGvgEt~ACGTGa~A~a~aa~~~g~~~--~~-~~V~~~GG~L~V~~~~--~-~~----~V~ 348 (364)
..+ ...++--+ +-+|.-+---||||+.|=-+.++-+|+.. .. ...+.=|.....++.. + .+ .-.
T Consensus 228 ~~~~~~~~~~~~Rnav~~~p~~~DRSPcGTGtSArmA~L~AkGklk~Gd~~~~~SiIGS~F~grve~~~ev~grpaI~P~ 307 (341)
T COG3938 228 FAGPPVRPGADLRNAVFYGPKAIDRSPCGTGTSARMAVLHAKGKLKVGDEFIHESIIGSEFEGRVEALTEVAGRPAIVPS 307 (341)
T ss_pred EeCCCcCcCccccceEEECCCccccCCCCCchhHHHHHHHhcCCccCCcceeeeeeeeeeEeeEEEEEeecCCCCcccce
Confidence 432 12233223 34565555569999988655555567654 22 3344445544443322 1 11 235
Q ss_pred EEeceEEEEEEEEEeC
Q 017920 349 MTGPAEVVFYGSVLLN 364 (364)
Q Consensus 349 i~G~A~~V~~G~i~i~ 364 (364)
|+|.|-+.-.-++.|+
T Consensus 308 I~Gra~itG~~t~~lD 323 (341)
T COG3938 308 ISGRAWITGEHTIFLD 323 (341)
T ss_pred eccceEEeeeeeEEcC
Confidence 7777777766666553
No 18
>PF04303 PrpF: PrpF protein; InterPro: IPR007400 PrpF is a protein found in the 2-methylcitrate pathway. It is structurally similar to DAP epimerase and proline racemase. This protein is likely to acts to isomerise trans-aconitate to cis-aconitate []. ; PDB: 2H9F_A 2PVZ_B 2PW0_A 3G7K_D.
Probab=96.78 E-value=0.2 Score=50.12 Aligned_cols=274 Identities=20% Similarity=0.262 Sum_probs=140.5
Q ss_pred ceEEEeeeCCCCcEEEEeCCCCCCC-CCCHHHHHHhh---hcc--CCccc-----ceEEEEecCC-CCCcEEEEEEeCCC
Q 017920 78 FLHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLC---DRN--FGIGA-----DGVIFAMPGV-NGTDYTMRIFNSDG 145 (364)
Q Consensus 78 ~i~F~K~~g~GNdfvvid~~~~~~~-~~~~~~~~~lc---dR~--~GIGa-----DgvlfV~p~~-~~ad~~mRiFnpDG 145 (364)
.|+.+=|.|-=-.=+++...+.+.. ...++...++. |.+ .|+|. +=+.+|.|+. +++|+...|.--.=
T Consensus 3 ~ip~~~mRGGTSkg~ff~~~dLP~d~~~~d~ill~~mGSpD~~QiDGlGG~~s~tSKvaIV~~S~~~~~DVdY~F~QV~i 82 (371)
T PF04303_consen 3 RIPCVFMRGGTSKGLFFHADDLPADPAERDRILLAAMGSPDPRQIDGLGGGTSSTSKVAIVSPSSRPDADVDYTFAQVGI 82 (371)
T ss_dssp EEEEEEEEETTEEEEEEEGGGS-GGGHHHHHHHHHHHT-S-TT-TTSSS-SSGGGSEEEEEEE--STT-SEEEEEEEE-S
T ss_pred eeeEEEEeccCccEeEEchhhCCCChHHHHHHHHHHcCCCCccccCCccCCCcccceEEEEECCCCCCcceEEEEEEEec
Confidence 5666667774444477777665311 01112222332 222 16665 5577887763 46676655542210
Q ss_pred -----CcCCCcchhHHHHHHHHHHHccCCCC----cEEEEE-eCCe-eEEEEEe-eCc------------------eEEE
Q 017920 146 -----SEPEMCGNGVRCFARFIAELENLNGK----QSFTVH-TGAG-LIVPEIQ-DDG------------------KVKV 195 (364)
Q Consensus 146 -----sE~emCGNgtrc~a~~L~~~~g~~~~----~~i~ie-T~aG-~l~v~v~-~~g------------------~v~V 195 (364)
.-..-|||=+-+++-|..+ +|++.. ..++|. |+.| ++.+++. .+| .|++
T Consensus 83 ~~~~vD~~~NCGN~~saVgpfAi~-~GLV~~~~~~t~VrI~ntNTgkii~a~vp~~~G~~~~~Gd~~I~GVpGtga~I~L 161 (371)
T PF04303_consen 83 DEPRVDWSGNCGNMSSAVGPFAIE-EGLVPASEPITTVRIRNTNTGKIIEAHVPVPDGRVVYEGDFAIDGVPGTGAPIRL 161 (371)
T ss_dssp SSS-EE-SS--TTCHHHHHHHHHH-TTSSGGGSSEEEEEEEETTTTEEEEEEEEEETTEE---SSB--TTSSS-B--EEE
T ss_pred CCCccccCCCcccHHHHhHHHHHH-CCCccCCCCcEEEEEEECCCCCEEEEEEEcCCCeeeecCceeeCCcCCCCCCEEE
Confidence 1235799999999999999 998742 245554 4544 3333332 121 2555
Q ss_pred EcCCCccC--CCCCCCccccCccccccccceeeCCeeEEEEEEEcCCCeEEEEeccCCc-----ccccch--h---hHhh
Q 017920 196 DMGEPILK--ASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQ-----NLKVDK--L---NLAE 263 (364)
Q Consensus 196 ~mg~p~~~--~~~ip~~~~~~~~~~~l~~~l~i~~~~~~~~~Vs~GnpH~Vv~v~~~~~-----~~~l~~--~---~l~~ 263 (364)
++-.|.=. ..-.|.. . ....+.+++..+++.+|+.|||-++|--++-.- ..+++. . -+++
T Consensus 162 ~F~dp~Ga~TG~LlPTG----~----~~D~i~~~g~~i~vSlvDaanP~Vfv~A~dlGl~G~E~p~~l~a~~~ll~~lE~ 233 (371)
T PF04303_consen 162 DFLDPAGAKTGKLLPTG----N----AVDTIDGPGGTIEVSLVDAANPVVFVRASDLGLTGTELPAELDADPELLARLEA 233 (371)
T ss_dssp EEESGBTTTTSSSSTTS----S----SSEEEEETTEEEEEEEEEBSSEEEEEECGGGT--S---HHHHHT-HHHHHHHHH
T ss_pred EecCCCCCCCCCcCCCC----C----eEEEEEcCCceEEEEEEEcCCcEEEEEHHHcCCCCccCHHHHhcCHHHHHHHHH
Confidence 55444211 1112221 0 123355556678899999999976665443110 001110 0 0111
Q ss_pred h--------C--ccccc---CCCCCCceeEEEEEEeC-----C--------CeEEEEEeeCCCCCCCCchhhHHHHHHHH
Q 017920 264 I--------G--PKFEH---HSVFPARTNTEFVEIIS-----P--------SQLKMRVWERGAGATLACGTGACAVVVAA 317 (364)
Q Consensus 264 l--------g--~~le~---~~~fp~~~Nv~fv~v~~-----~--------~~i~~R~fErGvgEt~ACGTGa~A~a~aa 317 (364)
+ | ...+. .+..| .+.++.... . -+|.+|+|-.|.-=-.-.+||++|+|+++
T Consensus 234 IR~~aa~~mGl~~d~~~a~~~~~~P---Ki~lVs~p~~y~~~~G~~v~~~~~di~~R~~s~~~~H~A~~~Tgavcla~Aa 310 (371)
T PF04303_consen 234 IRRAAAVRMGLLGDVEDAVNSPAVP---KIALVSPPADYTTSGGETVKADDIDIVVRYFSMGKCHKAIAVTGAVCLAAAA 310 (371)
T ss_dssp HHHHHHHHTTS-SSGGGGGG-SSSS---EEEEEESS--EE-TTS-EE-GGG-SEEEEEEETTEE-SS--HHHHHHHHHHH
T ss_pred HHHHHHHhcCccCChHHhcccCCCC---EEEEEeCCccccCCCCcccccccccEEEEEecCCCcchhhhhHHHHHHHHHH
Confidence 1 1 11111 11133 234443211 1 25889999877654555788898888776
Q ss_pred HHhCC---------CCCceEEEccCccEEEEEeec--CC---eEEEEeceEEEEEEEEEe
Q 017920 318 VLEGH---------AERRCTVDLPGGPLDIEWKEE--DN---HVYMTGPAEVVFYGSVLL 363 (364)
Q Consensus 318 ~~~g~---------~~~~~~V~~~GG~L~V~~~~~--~~---~V~i~G~A~~V~~G~i~i 363 (364)
...|- ....++|..|.|.|.|.+..+ ++ .+.+.=.|..+++|++++
T Consensus 311 ~i~GTv~~~~~~~~~~~~v~IgHPSG~l~v~~~~~~~~~~v~~~~v~RTARrLm~G~v~v 370 (371)
T PF04303_consen 311 RIPGTVVHELARGRAPGEVRIGHPSGVLEVGVEVDGDDGEVESAGVYRTARRLMEGEVFV 370 (371)
T ss_dssp HSTTSHHHHHTTSST-SEEEEEETTEEEEEEEEEEEETTEEEEEEEEE-EEEEEEEEEEE
T ss_pred hcCCCcccccccccccccEEEecCCeEEEEEEEEeccCCceeEEEEEEehhhheeEEEEe
Confidence 55432 224688999999988876532 23 566777899999999986
No 19
>TIGR00654 PhzF_family phenazine biosynthesis protein PhzF family. Members of this family show a distant global similarity to diaminopimelate epimerases, which can be taken as the outgroup. One member of this family has been shown to act as an enzyme in the biosynthesis of the antibiotic phenazine in Pseudomonas aureofaciens. The function in other species is unclear.
Probab=96.62 E-value=0.017 Score=55.67 Aligned_cols=96 Identities=14% Similarity=0.187 Sum_probs=65.0
Q ss_pred EcCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEE--eCCCeEEEEEeeCCCCCCCCchhhHHHHH
Q 017920 237 SMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEI--ISPSQLKMRVWERGAGATLACGTGACAVV 314 (364)
Q Consensus 237 s~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v--~~~~~i~~R~fErGvgEt~ACGTGa~A~a 314 (364)
..|||-+||...+ .++...+.+++..+. ++ ..-|+.. .....+++|+|-+| .|-+-||-|++|++
T Consensus 16 ~~GN~~~Vv~~~~-----~l~~~~mq~iA~~~~----~~---et~Fv~~~~~~~~~~~~R~Fnpg-~E~~~CGh~tl~aa 82 (297)
T TIGR00654 16 FMGNPAAVVNFAE-----ILSEEEMQAIANETN----YS---ETTFLLKPSSEKYDYRLRIFTPR-SELPFAGHPTIGSC 82 (297)
T ss_pred CCCCceEEEcCCC-----CCCHHHHHHHHHHhC----CC---ceEEEcCCCCCCCceEEEEECCC-CccCcCCchHHHHH
Confidence 3799998887542 455555566666542 22 2456543 22346899999995 68888999999887
Q ss_pred HHHHHhCCCC--CceEEEccCccEEEEEeecCC
Q 017920 315 VAAVLEGHAE--RRCTVDLPGGPLDIEWKEEDN 345 (364)
Q Consensus 315 ~aa~~~g~~~--~~~~V~~~GG~L~V~~~~~~~ 345 (364)
.++...+... ..+.++...|.+.+++..+++
T Consensus 83 ~~l~~~~~~~~~~~~~~et~aG~v~v~~~~~~~ 115 (297)
T TIGR00654 83 YALLEFTKLTTATTLVQECKAGAVPVTINEKNG 115 (297)
T ss_pred HHHHHcCCCCCCccEEEEcCceEEEEEEEecCC
Confidence 7776665432 357888899999998864333
No 20
>PF02567 PhzC-PhzF: Phenazine biosynthesis-like protein; InterPro: IPR003719 Five genes, phzF, phzA, phzB, phzC and phzD, encode enzymes for phenazine biosynthesis in the biological control bacterium Pseudomonas chlororaphis (also known as Pseudomonas aureofaciens). Protein PhzF is similar to 3-deoxy-D-arabino-heptulosonate-7-phosphate synthases of solanaceous plants. PhzC is responsible for the conversion of phenazine-I-carboxylic acid to 2-hydroxy-phenazine-I-carboxylic acid [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 1U0K_A 1QYA_B 1QY9_D 1SDJ_A 1U1X_A 1U1W_B 1T6K_A 1XUA_A 1XUB_A 1U1V_A ....
Probab=96.59 E-value=0.03 Score=53.38 Aligned_cols=89 Identities=21% Similarity=0.360 Sum_probs=69.8
Q ss_pred cCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEe--CCCeEEEEEeeCCCCCCCCchhhHHHHHH
Q 017920 238 MGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEII--SPSQLKMRVWERGAGATLACGTGACAVVV 315 (364)
Q Consensus 238 ~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~--~~~~i~~R~fErGvgEt~ACGTGa~A~a~ 315 (364)
.|||=.||+..+ .++...+.++++.+.. | ..-|+... +...+++|+|-+. +|-+-||-++.|++.
T Consensus 10 ~GNp~aVv~~~~-----~l~~~~mq~iA~e~n~----s---ET~Fv~~~~~~~~~~~vR~FTp~-~Ev~fcGH~tlaaa~ 76 (281)
T PF02567_consen 10 GGNPAAVVLDAD-----GLSDEQMQAIAREFNL----S---ETAFVLPSTDDEADYRVRIFTPT-GEVPFCGHATLAAAH 76 (281)
T ss_dssp SSEEEEEEESST-----TS-HHHHHHHHHHHTS----S---EEEEEEEESSSTTSEEEEEEESS-SEESSSHHHHHHHHH
T ss_pred CCCeEEEEEcCC-----CCCHHHHHHHHHHcCC----C---eeEEEEeccCCCceeEEEEEecc-CCCCCCCcHHHHHHH
Confidence 599989998763 4666677788776543 2 35677755 5678999999986 899999999999998
Q ss_pred HHHHhCCCC-CceEEEccCccEEEE
Q 017920 316 AAVLEGHAE-RRCTVDLPGGPLDIE 339 (364)
Q Consensus 316 aa~~~g~~~-~~~~V~~~GG~L~V~ 339 (364)
++...+... ..+.+..+.|.|.|+
T Consensus 77 ~l~~~~~~~~~~~~~~t~~G~l~v~ 101 (281)
T PF02567_consen 77 ALFERGGLDPGEIVFETKAGILPVE 101 (281)
T ss_dssp HHHHHTTTSSSEEEEEETTEEEEEE
T ss_pred HHHHhccccCceEEEEcCeEEEEEE
Confidence 888888754 468899999999996
No 21
>TIGR02334 prpF probable AcnD-accessory protein PrpF. The 2-methylcitrate cycle is one of at least five degradation pathways for propionate via propionyl-CoA. Degradation of propionate toward pyruvate consumes oxaloacetate and releases succinate. Oxidation of succinate back into oxaloacetate by the TCA cycle makes the 2-methylcitrate pathway a cycle. This family consists of PrpF, an incompletely characterized protein that appears to be an essential accessory protein for the Fe/S-dependent 2-methylisocitrate dehydratase AcnD (TIGR02333). This protein is related to but distinct from FldA (part of Pfam family pfam04303), a putative fluorene degradation protein of Sphingomonas sp. LB126.
Probab=96.25 E-value=0.34 Score=48.62 Aligned_cols=74 Identities=26% Similarity=0.306 Sum_probs=51.8
Q ss_pred eEEEEEeeCCCCCCCCchhhHHHHHHHHHHhCCCC---------CceEEEccCccEEEEEeec--CC--eE---EEEece
Q 017920 290 QLKMRVWERGAGATLACGTGACAVVVAAVLEGHAE---------RRCTVDLPGGPLDIEWKEE--DN--HV---YMTGPA 353 (364)
Q Consensus 290 ~i~~R~fErGvgEt~ACGTGa~A~a~aa~~~g~~~---------~~~~V~~~GG~L~V~~~~~--~~--~V---~i~G~A 353 (364)
+|.+|.|-.|.-=-.--.||+.++|+++..-|-+- ..+.|..|.|.|.|.+..+ ++ .| .+.=.|
T Consensus 296 di~~R~~s~~~~H~A~~vTgav~la~Aa~ipGTv~~~~~~~~~~~~v~igHPsG~l~v~~~~~~~~~~~~v~~~~v~RTA 375 (390)
T TIGR02334 296 DLLVRALSMGKLHHAMMGTAAVAIGTAAAVPGTLVNLAAGGGERSAVRFGHPSGTLRVGAEASQVNGQWTVTKAIMSRSA 375 (390)
T ss_pred CEEEEEecCCCCchhhhHHHHHHHHHHHhcCCchhhhccCCCCcceEEEeCCCeEEEEEEEEecCCCceEEEEEEEEEeh
Confidence 68899998876544456788888888776655321 1467888999998887632 22 22 244567
Q ss_pred EEEEEEEEEe
Q 017920 354 EVVFYGSVLL 363 (364)
Q Consensus 354 ~~V~~G~i~i 363 (364)
..+++|++++
T Consensus 376 Rrlm~G~v~v 385 (390)
T TIGR02334 376 RVLMEGWVRV 385 (390)
T ss_pred hhhccEEEec
Confidence 7899999875
No 22
>TIGR00652 DapF diaminopimelate epimerase.
Probab=96.16 E-value=0.08 Score=50.45 Aligned_cols=102 Identities=22% Similarity=0.224 Sum_probs=64.7
Q ss_pred eeCCCCcEEEEeCCCCCCCCCCHHHHHHhhhccCCcccce--EEEEecCCCCCcEEEEEEeCCCCcCCCcchhHHHHHHH
Q 017920 84 YHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADG--VIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARF 161 (364)
Q Consensus 84 ~~g~GNdfvvid~~~~~~~~~~~~~~~~lcdR~~GIGaDg--vlfV~p~~~~ad~~mRiFnpDGsE~emCGNgtrc~a~~ 161 (364)
.-..||+++|+.-.+.. .+.........+++- .-.++ +-|+... +..++++|+|-+--.|-+-||-|.-|+|.+
T Consensus 147 ~vstG~ph~vv~v~~~~--~l~~~~~~~~~~~~~-~fp~~~nV~~~~~~-~~~~i~~R~ferg~get~acGTGa~A~a~a 222 (268)
T TIGR00652 147 AVDTGNPHLVVFVDDVE--GLNLLILGPLLEYHE-RFPEGVNVNFVQVK-NDDTIKLRTYERGAGETLACGTGACASAAA 222 (268)
T ss_pred EEecCCCcEEEEeCCcC--cccHHHhccccccCC-CCCCCeEEEEEEEC-cCCEEEEEEecCCCCcccccHHHHHHHHHH
Confidence 45579999776433221 121111112222221 11122 3343332 456799999999767999999999999888
Q ss_pred HHHHccCCCCcEEEEEeCCeeEEEEEeeCc
Q 017920 162 IAELENLNGKQSFTVHTGAGLIVPEIQDDG 191 (364)
Q Consensus 162 L~~~~g~~~~~~i~ieT~aG~l~v~v~~~g 191 (364)
++. .|..+. .+.+....|.+.+++..++
T Consensus 223 ~~~-~g~~~~-~~~v~~~~G~l~v~~~~~g 250 (268)
T TIGR00652 223 ALK-LGGTPK-KVTVHLPGGELEIEWKEDG 250 (268)
T ss_pred HHH-hCCCCC-CEEEEcCCCEEEEEEECCC
Confidence 888 676644 4899999999988887544
No 23
>PRK13577 diaminopimelate epimerase; Provisional
Probab=96.03 E-value=0.17 Score=48.64 Aligned_cols=104 Identities=20% Similarity=0.160 Sum_probs=64.6
Q ss_pred eEEEeeeCCCCcEEEEeCCCCCCCCCCHHHHHHhhhccCCccc--ceEEEEecCCCCCcEEEEEEeCCCCcCCCcchhHH
Q 017920 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGA--DGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVR 156 (364)
Q Consensus 79 i~F~K~~g~GNdfvvid~~~~~~~~~~~~~~~~lcdR~~GIGa--DgvlfV~p~~~~ad~~mRiFnpDGsE~emCGNgtr 156 (364)
+++.-.+ .||+++|+.-.+.....+ ......+- .+ ..-. -.+-|+... +...+++|+|-+.--|-.-||-|.-
T Consensus 149 ~~~~~vs-~G~PH~Vv~V~~~~~~~~-~~~g~~~~-~~-~~fp~~~Nv~f~~~~-~~~~i~~R~~ErG~g~T~AcGTga~ 223 (281)
T PRK13577 149 LTYCAAT-IGNPHCVVLLDEISEELA-RELGPLIE-TH-PRFPNRTNVQFLKVL-DRNTIQIEIWERGAGYTLASGSSSC 223 (281)
T ss_pred EeEEEEE-CCCCcEEEEeCCcchhhH-HhhCcccc-cc-CCCCCCceEEEEEEc-cCCeEEEEEECCCCCCCccCHHHHH
Confidence 4555455 899997775433210000 11111121 11 1111 144556443 4457999999995346778999999
Q ss_pred HHHHHHHHHccCCCCcEEEEEeCCeeEEEEEee
Q 017920 157 CFARFIAELENLNGKQSFTVHTGAGLIVPEIQD 189 (364)
Q Consensus 157 c~a~~L~~~~g~~~~~~i~ieT~aG~l~v~v~~ 189 (364)
|+|.+++. .|..+ ..+++++.+|.+.+++..
T Consensus 224 A~a~~~~~-~g~~~-~~~~V~~pGG~l~v~~~~ 254 (281)
T PRK13577 224 AAAAVAHR-LGLCD-SSITVHMPGGQIDIEIKD 254 (281)
T ss_pred HHHHHHHH-hCCCC-CeEEEEcCCCEEEEEEEC
Confidence 99888888 67654 469999999999998864
No 24
>PRK10281 hypothetical protein; Provisional
Probab=95.99 E-value=0.065 Score=52.11 Aligned_cols=94 Identities=15% Similarity=0.177 Sum_probs=65.6
Q ss_pred EcCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEeCC--CeEEEEEeeCCCCCCCCchhhHHHHH
Q 017920 237 SMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISP--SQLKMRVWERGAGATLACGTGACAVV 314 (364)
Q Consensus 237 s~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~~~--~~i~~R~fErGvgEt~ACGTGa~A~a 314 (364)
..|||=.||+..+ .++...+.++++.+.. + -..|+...+. ..+++|.|-+. +|=+-||-++.|++
T Consensus 16 f~GNpaaVv~~a~-----~L~~~~Mq~IAre~n~----S---ETaFv~~~~~~~~~~~lR~FTP~-~Ev~fcGHaTlaa~ 82 (299)
T PRK10281 16 FRGNSAGVVLNAD-----GLSEAQMQLIARELNH----S---ETAFLLSSDDSSYDVRVRYFTPT-VEVPICGHATVAAH 82 (299)
T ss_pred CCCCceEEEcCCC-----CCCHHHHHHHHHHhCC----c---eEEEEccCCCCCCceEEEEECCC-cccccCCcHHHHHH
Confidence 3699999997542 5666677788776543 2 2456542222 36999999987 58888999999887
Q ss_pred HHHHHhCCCC-CceEEEccCccEEEEEeec
Q 017920 315 VAAVLEGHAE-RRCTVDLPGGPLDIEWKEE 343 (364)
Q Consensus 315 ~aa~~~g~~~-~~~~V~~~GG~L~V~~~~~ 343 (364)
.++...+..+ ..+..+...|.|.|++..+
T Consensus 83 ~~L~~~~~~~~~~~~~~t~~G~v~v~~~~~ 112 (299)
T PRK10281 83 YVRATVLGLGNCTVWQTTLAGILPVDIEKE 112 (299)
T ss_pred HHHHHhCCCCCCcEEEEcCceEEEEEEEec
Confidence 6666655543 3567777889999988543
No 25
>PRK00450 dapF diaminopimelate epimerase; Provisional
Probab=94.72 E-value=0.45 Score=45.26 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=45.1
Q ss_pred CCcEEEEEEeCCCCcCCCcchhHHHHHHHHHHHccCCCCcEEEEEeCCeeEEEEEee
Q 017920 133 GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQD 189 (364)
Q Consensus 133 ~ad~~mRiFnpDGsE~emCGNgtrc~a~~L~~~~g~~~~~~i~ieT~aG~l~v~v~~ 189 (364)
..++++|+|.+-.-|-+-||-|.-++|.|+.. .+.. ...+++....|.+.+++..
T Consensus 198 ~~~~~~R~F~~gv~Ed~a~GTg~~a~a~~~~~-~g~~-~~~~~v~~r~G~l~v~~~~ 252 (274)
T PRK00450 198 RDHIRLRVYERGVGETLACGTGACAAAVAAIR-LGLL-DRKVTVHLPGGDLTIEWKG 252 (274)
T ss_pred CCEEEEEEecCCCCcccccccchHHHHHHHHH-hCCC-CCcEEEEcCCCEEEEEEEC
Confidence 45799999999646999999999999999887 6665 3457888889999888753
No 26
>COG0384 Predicted epimerase, PhzC/PhzF homolog [General function prediction only]
Probab=93.91 E-value=0.57 Score=45.47 Aligned_cols=96 Identities=15% Similarity=0.206 Sum_probs=66.0
Q ss_pred EcCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEeCC-CeEEEEEeeCCCCCCCCchhhHHHHHH
Q 017920 237 SMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISP-SQLKMRVWERGAGATLACGTGACAVVV 315 (364)
Q Consensus 237 s~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~~~-~~i~~R~fErGvgEt~ACGTGa~A~a~ 315 (364)
..|||=.|+.-.+ .++..++.+++..+... -..|+...+. ...++|+|-+. .|=+-||-.+.+++.
T Consensus 17 ~~GNp~aVv~~a~-----~Lsd~~MQ~IA~e~n~S-------ET~Fv~~~~~~~~~rlR~FTP~-~Evpf~GHaTlga~~ 83 (291)
T COG0384 17 FGGNPLAVVLDAD-----GLSDEQMQAIAREFNLS-------ETAFVLPPDDPADARLRIFTPT-TEVPFAGHATLGAAH 83 (291)
T ss_pred CCCCceEEEeCCC-----CCCHHHHHHHHHHhCCc-------eeEEEcCCCCcCceEEEEeCCC-cccccCCCHHHHHHH
Confidence 4799998888442 67788888998876543 2456653333 47999999986 455559999888644
Q ss_pred HHHHhCCCC--CceEEEccCccEEEEEeecCC
Q 017920 316 AAVLEGHAE--RRCTVDLPGGPLDIEWKEEDN 345 (364)
Q Consensus 316 aa~~~g~~~--~~~~V~~~GG~L~V~~~~~~~ 345 (364)
++...+... ..+..+..-|.|.|.+..+++
T Consensus 84 ~l~~~~~~~~~~~~~~e~~aG~v~i~~~~~~~ 115 (291)
T COG0384 84 VLAELGGLSNDTTLTLETKAGLVPVTVERGGG 115 (291)
T ss_pred HHHHhcCCCccceEEEEeccCeEEEEEEeCCC
Confidence 444444433 357788899998888776543
No 27
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism]
Probab=92.25 E-value=2.8 Score=40.30 Aligned_cols=102 Identities=23% Similarity=0.292 Sum_probs=64.5
Q ss_pred eeCCCCcEEEEeCCCCCCCCCCHHHHHHhhhccCCcccce--EEEEecCCCCCcEEEEEEeCCCCcCCCcchhHHHHHHH
Q 017920 84 YHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADG--VIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARF 161 (364)
Q Consensus 84 ~~g~GNdfvvid~~~~~~~~~~~~~~~~lcdR~~GIGaDg--vlfV~p~~~~ad~~mRiFnpDGsE~emCGNgtrc~a~~ 161 (364)
.--+||+=+|+--.+... ..-......|.... ...++ +.|+... +....+||.|--..-|-.-||-|+-+++..
T Consensus 150 ~vs~GnPH~V~~Vddv~~-~~~~~~g~~l~~h~--~Fp~~vNV~F~~v~-~~~~i~vrv~ERG~G~T~ACGTGa~Aa~~~ 225 (272)
T COG0253 150 AVSMGNPHLVIFVDDVET-ANLEELGPLLESHE--LFPEGVNVGFVQVL-SRDAIRLRVYERGAGETLACGTGACAAAVV 225 (272)
T ss_pred EEecCCCeEEEEeCCccc-chhhhhhhhhhcCc--cCCCceEEEEEEeC-CCCcEEEEEeecCCcccccchhHHHHHHHH
Confidence 445799985553322111 11123445555432 22233 3455443 345689999988656777899999666666
Q ss_pred HHHHccCCCCcEEEEEeCCeeEEEEEeeCc
Q 017920 162 IAELENLNGKQSFTVHTGAGLIVPEIQDDG 191 (364)
Q Consensus 162 L~~~~g~~~~~~i~ieT~aG~l~v~v~~~g 191 (364)
... .++.+. .++|++++|.|.++..+++
T Consensus 226 a~~-~~~~~~-~v~V~~pGG~L~i~~~~~g 253 (272)
T COG0253 226 AAR-LGLLDR-KVTVHLPGGTLEIEWKDDG 253 (272)
T ss_pred HHH-hccCCC-cEEEEcCCCeEEEEEEcCC
Confidence 666 666654 7999999999999887765
No 28
>PRK13969 proline racemase; Provisional
Probab=91.42 E-value=0.83 Score=45.18 Aligned_cols=69 Identities=20% Similarity=0.375 Sum_probs=53.8
Q ss_pred CeEEEEEeeCCCCCCCCchhhHHHHHHHHHHhCCCCC-----ceEEEccCccEEEEEeecCC---eEEEEeceEEEEE
Q 017920 289 SQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAER-----RCTVDLPGGPLDIEWKEEDN---HVYMTGPAEVVFY 358 (364)
Q Consensus 289 ~~i~~R~fErGvgEt~ACGTGa~A~a~aa~~~g~~~~-----~~~V~~~GG~L~V~~~~~~~---~V~i~G~A~~V~~ 358 (364)
.++.+++|+.+ |+-+-||.|+-+++.++...|.++. .+.++.|.|.+.+.+..+++ .|.+.+-..+++.
T Consensus 75 Ad~gvif~~~~-gy~~MCGhgtI~vat~l~e~G~v~~~~~~~~v~ieTPaGlV~a~~~~~~g~v~~Vs~~nVPsf~~~ 151 (334)
T PRK13969 75 ADFGIIFMDGG-GYLNMCGHGSIGAATCAVETGIVKVEEPYTHIKLEAPAGMINARVKVEDGKAKEVSIVNVPAFLYK 151 (334)
T ss_pred CCEEEEEEeCC-cccccccChHHHHHHHHHHcCCcCCCCCceeEEEECCceEEEEEEEEcCCeEEEEEEEeeecchhh
Confidence 57889999754 8888999999999999999997652 37889999999988864444 3676666665554
No 29
>KOG3033 consensus Predicted PhzC/PhzF-type epimerase [General function prediction only]
Probab=89.62 E-value=1 Score=42.63 Aligned_cols=71 Identities=17% Similarity=0.245 Sum_probs=48.9
Q ss_pred cceEEEE--ecCCCCCcEEEEEEeCC--CCcCCCcchhHHHHHHHHHHHccCCCCcEEEEE-eCCeeEEEEEeeCc
Q 017920 121 ADGVIFA--MPGVNGTDYTMRIFNSD--GSEPEMCGNGVRCFARFIAELENLNGKQSFTVH-TGAGLIVPEIQDDG 191 (364)
Q Consensus 121 aDgvlfV--~p~~~~ad~~mRiFnpD--GsE~emCGNgtrc~a~~L~~~~g~~~~~~i~ie-T~aG~l~v~v~~~g 191 (364)
.|+++.. .++....||.+|+|-|- -.|-+-||+|--++++|+....|..+-.-++.- +.+|.+.+.++++.
T Consensus 192 ~~~~~v~~~g~~g~~~dy~~RyFAP~~GVnEDPvtGSa~caL~~yws~~~~k~~~~afqas~~Rgg~~rv~l~~ea 267 (286)
T KOG3033|consen 192 NNGMIVTFAGSSGSPYDYESRYFAPWVGVNEDPVTGSAHCALGPYWSLILGKKDFYAFQASPTRGGLFRVSLKKEA 267 (286)
T ss_pred CCceEEEEecCCCCCCceEeeeccccccccCCCCCCceeeehHHHHHHHcCccceeeeeecccCCcEEEEEEcCCc
Confidence 3444443 33335789999999882 237799999999999999884332222235555 88899998887653
No 30
>PRK13971 hydroxyproline-2-epimerase; Provisional
Probab=89.51 E-value=1.4 Score=43.55 Aligned_cols=77 Identities=23% Similarity=0.402 Sum_probs=52.9
Q ss_pred eEEEEEEe--CCCeEEEEEeeCCCCCCCCchhhHHHHHHHHHHhCCCC----CceEEEccCccEEEEEeecCC---eEEE
Q 017920 279 NTEFVEII--SPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAE----RRCTVDLPGGPLDIEWKEEDN---HVYM 349 (364)
Q Consensus 279 Nv~fv~v~--~~~~i~~R~fErGvgEt~ACGTGa~A~a~aa~~~g~~~----~~~~V~~~GG~L~V~~~~~~~---~V~i 349 (364)
+..|+... ++.++.+|+|.+. +|-+-||.++.+++.++...|.++ ..+.++.+.|.+.|++..+++ .|.+
T Consensus 62 ~g~~l~pp~~~~Ad~gvrfFtp~-~e~~mcGH~TIg~a~~L~e~G~i~~~~~~~~~letpaG~V~V~v~~~~g~v~~v~~ 140 (333)
T PRK13971 62 SGSILYPPTRPDCDFAILFIETS-GCLPMCGHGTIGTVTAAIEEGLVTPKTPGKLRLDTPAGLVDIEYEQDGEKVESVRL 140 (333)
T ss_pred eEEEEECCCCCCCCEEEEEECCC-cccCcCccHHHHHHHHHHHcCCCCCCCCCeEEEECCcEEEEEEEEEcCCeEEEEEE
Confidence 34555322 3346999999985 688889999999988888888653 246788899999888764433 3444
Q ss_pred EeceEEE
Q 017920 350 TGPAEVV 356 (364)
Q Consensus 350 ~G~A~~V 356 (364)
...-.++
T Consensus 141 ~nvpsf~ 147 (333)
T PRK13971 141 TNVPSYL 147 (333)
T ss_pred EccCCch
Confidence 4433333
No 31
>COG2828 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.63 E-value=9.7 Score=37.26 Aligned_cols=73 Identities=27% Similarity=0.419 Sum_probs=45.3
Q ss_pred EEEEEeeCCCCCCCCchhhHHHHHHHHHHhCC----------CCCceEEEccCccEEEEEeecC--C---eEEEEeceEE
Q 017920 291 LKMRVWERGAGATLACGTGACAVVVAAVLEGH----------AERRCTVDLPGGPLDIEWKEED--N---HVYMTGPAEV 355 (364)
Q Consensus 291 i~~R~fErGvgEt~ACGTGa~A~a~aa~~~g~----------~~~~~~V~~~GG~L~V~~~~~~--~---~V~i~G~A~~ 355 (364)
+++|.|-.|----.=-|||+.|.+-++..-|- ....+.+.-|.|.|+|....++ + +..|.=.|..
T Consensus 286 llvR~~sm~k~H~Al~~TgAvaiatA~a~pGtv~~~la~~~g~~~~V~~~HPSG~l~v~~~~~~~~~tv~~a~~~RtAR~ 365 (378)
T COG2828 286 LLVRAFSMGKLHHALAGTGAVAIATAAAVPGTVLVNLAAGGGERKNVRFEHPSGTLDVGLEAEGQDGTVTRASMSRTARK 365 (378)
T ss_pred HHHHhhcccchhHHHhhhhHHHhhHhhhcCCcHHHHhhccCCccceEEeeCCCCcEEEeeeeccCCCcEEEEEeehhhhh
Confidence 44788866421111236666666544433322 1224778889999999876532 2 4557888888
Q ss_pred EEEEEEEe
Q 017920 356 VFYGSVLL 363 (364)
Q Consensus 356 V~~G~i~i 363 (364)
.|+|.+++
T Consensus 366 lmeG~V~~ 373 (378)
T COG2828 366 LMEGWVRV 373 (378)
T ss_pred hhcceEec
Confidence 99998875
No 32
>PRK13970 hydroxyproline-2-epimerase; Provisional
Probab=83.29 E-value=0.92 Score=44.38 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=51.0
Q ss_pred CCeEEEEEeeCCCCCCCCchhhHHHHHHHHHHhCCCC-CceEEEccCccEEEEEeecCCeEEEEeceEEEE
Q 017920 288 PSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAE-RRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVF 357 (364)
Q Consensus 288 ~~~i~~R~fErGvgEt~ACGTGa~A~a~aa~~~g~~~-~~~~V~~~GG~L~V~~~~~~~~V~i~G~A~~V~ 357 (364)
+.++.+|+|+++ |+-+-||.|+.|++.++...|.++ ....++.|.|.+.+++. +++.|.+..--.+++
T Consensus 72 ~Ad~gvif~~~~-g~~~mCGH~TIa~~t~l~e~G~v~~~~~~ieTpaG~v~v~~~-~~~~V~f~NVPsf~~ 140 (311)
T PRK13970 72 DAAAGVIFFNNS-GYLGMCGHGTIGVVRTLHHMGRIGPGVHRIETPVGTVEATLH-DDLSVSVRNVLAYRH 140 (311)
T ss_pred ccCEEEEEEcCC-CcccccccchheeeeeeeecceecCCcEEEEcCCceEEEEEE-CCCeEEEEecchhhh
Confidence 346899999975 688899999999988888888875 34688999999999887 334566554433333
No 33
>PLN02536 diaminopimelate epimerase
Probab=80.55 E-value=11 Score=35.87 Aligned_cols=62 Identities=13% Similarity=0.163 Sum_probs=44.4
Q ss_pred EEEEEEe-CCCeEEEEEeeCCCCCCCCchhhHHHHHHHHHHhCCCC--CceEEEccCccEEEEEe
Q 017920 280 TEFVEII-SPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAE--RRCTVDLPGGPLDIEWK 341 (364)
Q Consensus 280 v~fv~v~-~~~~i~~R~fErGvgEt~ACGTGa~A~a~aa~~~g~~~--~~~~V~~~GG~L~V~~~ 341 (364)
+-|+... ....+++|+|-+--.|-.-||-|+-+++.|++..+... ..+.++...|.+.+++.
T Consensus 31 li~i~~~~~~ad~~mrifN~DGSea~mCGNg~Rc~a~~l~~~~~~~~~~~~~ieT~aG~i~~~v~ 95 (267)
T PLN02536 31 VIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGIRCFARFIAELENLQGKNSYKIHTGAGLIIPEMQ 95 (267)
T ss_pred EEEEecCCCCccEEEEEEcCCCChhhhCccHHHHHHHHHHHcCCCCCCceEEEEeCCccEEEEEe
Confidence 4555432 22468999998743454459999988888888877653 36889999999988774
No 34
>PF05544 Pro_racemase: Proline racemase; InterPro: IPR008794 This family consists of proline racemase (5.1.1.4 from EC) proteins which catalyse the interconversion of L- and D-proline in bacteria []. This family also contains several similar eukaryotic proteins including Q9NCP4 from SWISSPROT a sequence with B-cell mitogenic properties which has been characterised as a co-factor-independent proline racemase [].; GO: 0018112 proline racemase activity; PDB: 1TM0_A 2AZP_A 1W61_B 1W62_A.
Probab=77.35 E-value=17 Score=35.91 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=52.8
Q ss_pred CCeEEEEEeeCCCCCCCCchhhHHHHHHHHHHhCCCCC-----ceEEEccCccEEEEEeecCC---eEEEEeceEEEEEE
Q 017920 288 PSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAER-----RCTVDLPGGPLDIEWKEEDN---HVYMTGPAEVVFYG 359 (364)
Q Consensus 288 ~~~i~~R~fErGvgEt~ACGTGa~A~a~aa~~~g~~~~-----~~~V~~~GG~L~V~~~~~~~---~V~i~G~A~~V~~G 359 (364)
+.++-+-+|+. .|..+-||.|+-|++.|+...|.++. .+.+..|.|.+.+++.-+++ .|.+..--.++++-
T Consensus 66 ~Ad~Gvif~~~-~gy~~McGh~tI~~~t~lve~G~v~~~~~~t~v~letPaGlV~a~~~~~~g~v~~Vsf~nVPsf~~~~ 144 (325)
T PF05544_consen 66 EADFGVIFMHN-EGYSPMCGHGTIAVATALVETGLVPMKEPETEVRLETPAGLVEATVEVEGGKVESVSFENVPSFVYAL 144 (325)
T ss_dssp TSSEEEEEEES-SSC-SSTHHHHHHHHHHHHHTTSS-SECCECEEEEEETTEEEEEEEEETSTSEEEEEEE-S-BEEEEE
T ss_pred CCCEEEEEEcC-CCCCCCcccHHHHHHHHHHHCCcccCCCCCEEEEEECCCcEEEEEEEEeCCEEEEEEEeeEEeeeEec
Confidence 34566666675 47888999999999999999998752 46788899999888876554 57777766666665
Q ss_pred EEE
Q 017920 360 SVL 362 (364)
Q Consensus 360 ~i~ 362 (364)
.+.
T Consensus 145 d~~ 147 (325)
T PF05544_consen 145 DVP 147 (325)
T ss_dssp EEE
T ss_pred CCE
Confidence 544
No 35
>TIGR02334 prpF probable AcnD-accessory protein PrpF. The 2-methylcitrate cycle is one of at least five degradation pathways for propionate via propionyl-CoA. Degradation of propionate toward pyruvate consumes oxaloacetate and releases succinate. Oxidation of succinate back into oxaloacetate by the TCA cycle makes the 2-methylcitrate pathway a cycle. This family consists of PrpF, an incompletely characterized protein that appears to be an essential accessory protein for the Fe/S-dependent 2-methylisocitrate dehydratase AcnD (TIGR02333). This protein is related to but distinct from FldA (part of Pfam family pfam04303), a putative fluorene degradation protein of Sphingomonas sp. LB126.
Probab=73.35 E-value=32 Score=34.78 Aligned_cols=109 Identities=12% Similarity=0.085 Sum_probs=65.8
Q ss_pred ceEEEeeeCCCCcEEEEeCCCCCCC-CCCH-------------HHHHHhhhccCCccc-----------ceEEEEecCCC
Q 017920 78 FLHFVKYHGLGNDFILVDNRNSTEP-RITP-------------EQAAKLCDRNFGIGA-----------DGVIFAMPGVN 132 (364)
Q Consensus 78 ~i~F~K~~g~GNdfvvid~~~~~~~-~~~~-------------~~~~~lcdR~~GIGa-----------DgvlfV~p~~~ 132 (364)
.++-+=. -+||++|+|++.+.... ..++ +.++..+...+|+.. .=+.||.++.+
T Consensus 203 ~i~vS~I-DaanP~Vfv~A~dlGl~G~E~p~~l~~~~~ll~~lE~IR~~aa~~mGL~~~~~~~~~~~~~PKi~lvs~p~~ 281 (390)
T TIGR02334 203 TFKATLI-NAGIPTVFVNAEDLGYTGTELQDAINGDPAALAMFETIRAYGALRMGLISDLEEAATRQHTPKVAFVAPPAD 281 (390)
T ss_pred eEEEEEE-ECCCcEEEEEHHHcCCCCccCHHHHhchHHHHHHHHHHHHHHHHHcCCCCCcccccccCCCCeEEEEeCCCc
Confidence 3444433 36999999988643100 0111 124455555678722 22566666521
Q ss_pred ------------CCcEEEEEEeCCCCcCCCcchhHHHHHHHHHHHccCCC----C----cEEEEEeCCeeEEEEEe
Q 017920 133 ------------GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNG----K----QSFTVHTGAGLIVPEIQ 188 (364)
Q Consensus 133 ------------~ad~~mRiFnpDGsE~emCGNgtrc~a~~L~~~~g~~~----~----~~i~ieT~aG~l~v~v~ 188 (364)
+.|+..|+|.+-----.+-.-|++|+|....- .|-+. . ..++|+..+|.+.+.+.
T Consensus 282 y~~~~G~~v~~~~~di~~R~~s~~~~H~A~~vTgav~la~Aa~i-pGTv~~~~~~~~~~~~v~igHPsG~l~v~~~ 356 (390)
T TIGR02334 282 YTASSGKLVNAAEIDLLVRALSMGKLHHAMMGTAAVAIGTAAAV-PGTLVNLAAGGGERSAVRFGHPSGTLRVGAE 356 (390)
T ss_pred cccCCCccccccccCEEEEEecCCCCchhhhHHHHHHHHHHHhc-CCchhhhccCCCCcceEEEeCCCeEEEEEEE
Confidence 23788999988543445566788888887765 55321 1 26889999999888664
No 36
>PF04303 PrpF: PrpF protein; InterPro: IPR007400 PrpF is a protein found in the 2-methylcitrate pathway. It is structurally similar to DAP epimerase and proline racemase. This protein is likely to acts to isomerise trans-aconitate to cis-aconitate []. ; PDB: 2H9F_A 2PVZ_B 2PW0_A 3G7K_D.
Probab=66.18 E-value=55 Score=32.97 Aligned_cols=109 Identities=13% Similarity=0.206 Sum_probs=65.6
Q ss_pred ceEEEeeeCCCCcEEEEeCCCCCCC-CCCH-------------HHHHHhhhccCCcc-----------cceEEEEecCC-
Q 017920 78 FLHFVKYHGLGNDFILVDNRNSTEP-RITP-------------EQAAKLCDRNFGIG-----------ADGVIFAMPGV- 131 (364)
Q Consensus 78 ~i~F~K~~g~GNdfvvid~~~~~~~-~~~~-------------~~~~~lcdR~~GIG-----------aDgvlfV~p~~- 131 (364)
.++.+=.. .||++|+|++.+.... ..++ +.++.-+.+.+|+- ..=+.+|.|+.
T Consensus 190 ~i~vSlvD-aanP~Vfv~A~dlGl~G~E~p~~l~a~~~ll~~lE~IR~~aa~~mGl~~d~~~a~~~~~~PKi~lVs~p~~ 268 (371)
T PF04303_consen 190 TIEVSLVD-AANPVVFVRASDLGLTGTELPAELDADPELLARLEAIRRAAAVRMGLLGDVEDAVNSPAVPKIALVSPPAD 268 (371)
T ss_dssp EEEEEEEE-BSSEEEEEECGGGT--S---HHHHHT-HHHHHHHHHHHHHHHHHTTS-SSGGGGGG-SSSSEEEEEESS--
T ss_pred eEEEEEEE-cCCcEEEEEHHHcCCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCccCChHHhcccCCCCEEEEEeCCcc
Confidence 45555444 5999999998754211 0111 12445555566632 23356776663
Q ss_pred ---CC--------CcEEEEEEeCCCCcCCCcchhHHHHHHHHHHHccCC--------CCcEEEEEeCCeeEEEEEe
Q 017920 132 ---NG--------TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLN--------GKQSFTVHTGAGLIVPEIQ 188 (364)
Q Consensus 132 ---~~--------ad~~mRiFnpDGsE~emCGNgtrc~a~~L~~~~g~~--------~~~~i~ieT~aG~l~v~v~ 188 (364)
.. .|...|+|.+..---.+-+-|..|+|....- .|-+ ....++|+..+|.+.+.+.
T Consensus 269 y~~~~G~~v~~~~~di~~R~~s~~~~H~A~~~Tgavcla~Aa~i-~GTv~~~~~~~~~~~~v~IgHPSG~l~v~~~ 343 (371)
T PF04303_consen 269 YTTSGGETVKADDIDIVVRYFSMGKCHKAIAVTGAVCLAAAARI-PGTVVHELARGRAPGEVRIGHPSGVLEVGVE 343 (371)
T ss_dssp EE-TTS-EE-GGG-SEEEEEEETTEE-SS--HHHHHHHHHHHHS-TTSHHHHHTTSST-SEEEEEETTEEEEEEEE
T ss_pred ccCCCCcccccccccEEEEEecCCCcchhhhhHHHHHHHHHHhc-CCCcccccccccccccEEEecCCeEEEEEEE
Confidence 22 3678999988654556777888998887655 4421 2357999999999998775
No 37
>COG3938 Proline racemase [Amino acid transport and metabolism]
Probab=60.04 E-value=18 Score=35.24 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=42.9
Q ss_pred eEEEEEeeCCCCCCCCchhhHHHHHHHHHHhCCCC-----CceEEEccCccEEEEEeecCC---eEEEEe
Q 017920 290 QLKMRVWERGAGATLACGTGACAVVVAAVLEGHAE-----RRCTVDLPGGPLDIEWKEEDN---HVYMTG 351 (364)
Q Consensus 290 ~i~~R~fErGvgEt~ACGTGa~A~a~aa~~~g~~~-----~~~~V~~~GG~L~V~~~~~~~---~V~i~G 351 (364)
..-+-++|+ .|--+-||+++.+++.++...|.+. ....++.|+|.+.++.+-.++ +|+|.-
T Consensus 76 ~aa~ii~ep-s~~~pMsGsntIc~~T~lle~G~v~m~eP~t~l~letP~GlV~~~a~crdGk~E~V~l~N 144 (341)
T COG3938 76 DAAVIIMEP-SGCLPMSGSNTICVVTVLLESGLVPMQEPETVLRLETPAGLVEATAECRDGKVERVRLRN 144 (341)
T ss_pred cEEEEEEcc-CCCCCcCCCCchhhhhHHHHcCCccCCCCceEEEEecCCcEEEEEEEecCCcEEEEEEEc
Confidence 344445565 2556779999999888888888865 236788899999999873333 466553
No 38
>COG1903 CbiD Cobalamin biosynthesis protein CbiD [Coenzyme metabolism]
Probab=39.17 E-value=39 Score=33.87 Aligned_cols=38 Identities=37% Similarity=0.460 Sum_probs=21.9
Q ss_pred CCCCCchhhHHHHHHHH---HHhCCCCCceEEEccCcc-EEEEE
Q 017920 301 GATLACGTGACAVVVAA---VLEGHAERRCTVDLPGGP-LDIEW 340 (364)
Q Consensus 301 gEt~ACGTGa~A~a~aa---~~~g~~~~~~~V~~~GG~-L~V~~ 340 (364)
|.| +||.|+|+|.++ .+.|.....+.|..|.|. |.|.+
T Consensus 13 G~T--TGtcAtAAAkAa~l~l~~g~~~~~V~V~tP~G~~lev~v 54 (367)
T COG1903 13 GYT--TGTCATAAAKAALLALLNGEKVDTVKVPTPAGIRLEVPV 54 (367)
T ss_pred Ccc--hhHHHHHHHHHHHHHHhcCCcceeEEeccCCCceEEEEE
Confidence 455 555555544333 233555567888899885 54444
No 39
>PRK00075 cbiD cobalt-precorrin-6A synthase; Reviewed
Probab=29.94 E-value=65 Score=32.33 Aligned_cols=38 Identities=39% Similarity=0.509 Sum_probs=23.4
Q ss_pred CCCCCchhhHHHHHHHHH--Hh-CCCCCceEEEccCcc-EEEEE
Q 017920 301 GATLACGTGACAVVVAAV--LE-GHAERRCTVDLPGGP-LDIEW 340 (364)
Q Consensus 301 gEt~ACGTGa~A~a~aa~--~~-g~~~~~~~V~~~GG~-L~V~~ 340 (364)
|.| +||.++|+|.++. ++ |.....+.|.+|.|. |.+.+
T Consensus 12 G~T--TGtcAaAAAkAA~~~L~~g~~~~~V~I~lP~G~~l~i~v 53 (361)
T PRK00075 12 GYT--TGSCAAAAAKAALLALLTGEFPDTVEIDLPKGLRLEIPV 53 (361)
T ss_pred ccC--HHHHHHHHHHHHHHHHhhCCCCceEEEECCCCCEEEEEE
Confidence 566 6666666653332 23 666678999999873 44443
No 40
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=24.77 E-value=1.2e+02 Score=28.60 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=12.1
Q ss_pred CCCCcEEEEeCCCC
Q 017920 86 GLGNDFILVDNRNS 99 (364)
Q Consensus 86 g~GNdfvvid~~~~ 99 (364)
-+|=|||+||..+.
T Consensus 31 ~~G~D~v~iD~EHg 44 (249)
T TIGR03239 31 LAGFDWLLLDGEHA 44 (249)
T ss_pred hcCCCEEEEecccC
Confidence 37999999999875
No 41
>TIGR00312 cbiD cobalamin biosynthesis protein CbiD. role_id
Probab=24.48 E-value=1.1e+02 Score=30.48 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=18.1
Q ss_pred CchhhHHHHHHHHHHhCCCCCceEEEccCc
Q 017920 305 ACGTGACAVVVAAVLEGHAERRCTVDLPGG 334 (364)
Q Consensus 305 ACGTGa~A~a~aa~~~g~~~~~~~V~~~GG 334 (364)
+|.++++.+|+ +.+.|.....+.|.+|.|
T Consensus 2 tcAaAAAkAA~-~~l~g~~~~~V~i~lP~G 30 (347)
T TIGR00312 2 ACASAIAAVET-LLTKGCPDSVVLELLEPG 30 (347)
T ss_pred hHHHHHHHHHH-HHhcCCCCCeEEEeCCCC
Confidence 35555554443 333476667788998887
No 42
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=22.35 E-value=42 Score=30.67 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=12.7
Q ss_pred CCCCchhhHHHHHHHHHHhC
Q 017920 302 ATLACGTGACAVVVAAVLEG 321 (364)
Q Consensus 302 Et~ACGTGa~A~a~aa~~~g 321 (364)
-|+.||||..|+++ .++|
T Consensus 50 ~DlG~GTG~La~ga--~~lG 67 (198)
T COG2263 50 LDLGAGTGILAIGA--ALLG 67 (198)
T ss_pred EEcCCCcCHHHHHH--HhcC
Confidence 57889999877654 4445
No 43
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=20.73 E-value=1.6e+02 Score=28.23 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=12.3
Q ss_pred CCCCcEEEEeCCCCC
Q 017920 86 GLGNDFILVDNRNST 100 (364)
Q Consensus 86 g~GNdfvvid~~~~~ 100 (364)
-+|-|||+||..+..
T Consensus 37 ~~GfD~v~iD~EHg~ 51 (267)
T PRK10128 37 TSGYDWLLIDGEHAP 51 (267)
T ss_pred HcCCCEEEEccccCC
Confidence 368999999998763
No 44
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=20.40 E-value=1.6e+02 Score=27.95 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=12.6
Q ss_pred CCCCcEEEEeCCCCC
Q 017920 86 GLGNDFILVDNRNST 100 (364)
Q Consensus 86 g~GNdfvvid~~~~~ 100 (364)
-+|=|||+||..+..
T Consensus 38 ~~G~D~v~iD~EHg~ 52 (256)
T PRK10558 38 LAGFDWLVLDGEHAP 52 (256)
T ss_pred hcCCCEEEEccccCC
Confidence 479999999998763
No 45
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=20.25 E-value=62 Score=32.45 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=11.5
Q ss_pred cCCCeEEEEeccCC
Q 017920 238 MGNPHCVTFGTKEG 251 (364)
Q Consensus 238 ~GnpH~Vv~v~~~~ 251 (364)
+|++|+|||+...+
T Consensus 168 VGV~~ivvfiNKvD 181 (449)
T KOG0460|consen 168 VGVKHIVVFINKVD 181 (449)
T ss_pred cCCceEEEEEeccc
Confidence 68999999998544
Done!