Query 017920
Match_columns 364
No_of_seqs 212 out of 1365
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 07:03:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017920.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017920hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ejx_A DAP epimerase, diaminop 100.0 1.4E-84 5E-89 625.8 33.8 312 52-364 1-312 (317)
2 3fve_A DAP epimerase, diaminop 100.0 2.6E-73 8.8E-78 543.8 31.3 259 78-363 1-283 (290)
3 2gke_A DAP epimerase, diaminop 100.0 5.3E-63 1.8E-67 469.9 32.0 271 79-363 1-274 (274)
4 2otn_A Diaminopimelate epimera 100.0 4.1E-62 1.4E-66 471.7 32.9 284 69-363 13-304 (308)
5 3edn_A Phenazine biosynthesis 100.0 9.4E-56 3.2E-60 425.2 20.9 257 80-363 11-299 (299)
6 1qya_A ORFB, hypothetical prot 100.0 1.2E-52 4E-57 405.0 16.5 269 68-363 3-305 (307)
7 1xub_A Phenazine biosynthesis 100.0 5.2E-51 1.8E-55 392.3 23.0 253 81-363 30-298 (298)
8 1ym5_A YHI9, hypothetical 32.6 100.0 2.9E-51 1E-55 394.3 18.1 261 80-364 12-295 (300)
9 1u0k_A Gene product PA4716; sc 100.0 1.6E-50 5.5E-55 386.9 20.8 255 81-364 13-285 (288)
10 1s7j_A Phenazine biosynthesis 100.0 3.8E-50 1.3E-54 379.5 21.2 245 80-364 10-261 (262)
11 2azp_A Hypothetical protein PA 100.0 3E-46 1E-50 361.9 27.1 265 77-364 4-305 (318)
12 1w61_A B-cell mitogen; racemas 100.0 1.2E-40 4E-45 333.0 30.5 268 78-364 45-380 (414)
13 4dun_A Putative phenazine bios 100.0 3.4E-40 1.2E-44 311.8 21.6 246 81-364 12-262 (263)
14 1tm0_A Proline racemase; struc 100.0 1.2E-34 4.2E-39 284.3 25.5 268 78-364 6-323 (350)
15 2pw0_A PRPF methylaconitate is 98.8 7.3E-07 2.5E-11 87.7 23.8 279 75-363 8-394 (397)
16 3g7k_A 3-methylitaconate isome 98.4 0.00033 1.1E-08 68.4 29.2 276 76-363 4-374 (391)
17 4dun_A Putative phenazine bios 96.6 0.011 3.7E-07 55.1 10.7 97 238-350 18-115 (263)
18 1ym5_A YHI9, hypothetical 32.6 96.6 0.012 4.1E-07 55.5 10.9 99 87-189 158-270 (300)
19 3edn_A Phenazine biosynthesis 96.5 0.0092 3.2E-07 56.2 9.6 91 238-341 18-110 (299)
20 1u0k_A Gene product PA4716; sc 96.5 0.013 4.3E-07 55.0 10.5 99 238-349 19-123 (288)
21 1qya_A ORFB, hypothetical prot 96.5 0.0093 3.2E-07 56.4 9.6 101 238-352 27-131 (307)
22 2gke_A DAP epimerase, diaminop 96.4 0.05 1.7E-06 50.4 13.8 100 86-190 154-254 (274)
23 1s7j_A Phenazine biosynthesis 96.4 0.023 7.9E-07 52.5 11.1 99 238-352 17-116 (262)
24 1xub_A Phenazine biosynthesis 96.1 0.017 6E-07 54.4 8.9 101 238-352 36-140 (298)
25 2otn_A Diaminopimelate epimera 95.7 0.095 3.2E-06 49.5 12.2 61 133-194 228-289 (308)
26 2azp_A Hypothetical protein PA 95.5 0.14 4.8E-06 48.4 12.6 97 86-187 161-275 (318)
27 1tm0_A Proline racemase; struc 93.0 0.37 1.3E-05 46.3 9.3 71 280-351 63-143 (350)
28 1w61_A B-cell mitogen; racemas 91.1 1.5 5E-05 43.3 11.2 62 288-350 113-187 (414)
29 3ejx_A DAP epimerase, diaminop 89.3 6 0.00021 37.5 13.5 63 280-342 72-137 (317)
30 2pw0_A PRPF methylaconitate is 89.0 1.8 6.2E-05 42.3 9.8 109 78-188 212-365 (397)
31 3fve_A DAP epimerase, diaminop 88.5 1.5 5.2E-05 41.1 8.6 55 289-343 71-126 (290)
32 3g7k_A 3-methylitaconate isome 76.3 22 0.00075 34.6 11.4 109 77-187 192-348 (391)
33 1sr8_A Cobalamin biosynthesis 21.1 55 0.0019 30.6 2.9 38 301-340 41-80 (298)
No 1
>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A*
Probab=100.00 E-value=1.4e-84 Score=625.79 Aligned_cols=312 Identities=81% Similarity=1.348 Sum_probs=254.2
Q ss_pred ccccccccccCccccccccccccCCcceEEEeeeCCCCcEEEEeCCCCCCCCCCHHHHHHhhhccCCcccceEEEEecCC
Q 017920 52 SASSMSSIHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGV 131 (364)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~F~K~~g~GNdfvvid~~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~~ 131 (364)
+++||. +..+++.+++|++++++++.|+|+||||+||||||||+++.....++++++++||||++||||||++||.|+.
T Consensus 1 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~F~KmhG~GNDFvviD~~~~~~~~~~~~~~~~lcdR~~GIGaDGll~v~~~~ 79 (317)
T 3ejx_A 1 AAASMD-AVTAEKFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGV 79 (317)
T ss_dssp -------------------------CEEEEEEEEETTEEEEEEECTTCSSCSSCHHHHHHHTCTTTSSCCSEEEEEEECS
T ss_pred Cccccc-ccccccCCchhhhhhccCCceeEEEEcCCCCcEEEEeCCCccccCCCHHHHHHhhccCCCCCCCeEEEEcCCC
Confidence 368899 8899999999999998888999999999999999999987643457899999999999999999999998875
Q ss_pred CCCcEEEEEEeCCCCcCCCcchhHHHHHHHHHHHccCCCCcEEEEEeCCeeEEEEEeeCceEEEEcCCCccCCCCCCCcc
Q 017920 132 NGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSL 211 (364)
Q Consensus 132 ~~ad~~mRiFnpDGsE~emCGNgtrc~a~~L~~~~g~~~~~~i~ieT~aG~l~v~v~~~g~v~V~mg~p~~~~~~ip~~~ 211 (364)
+.+||+||||||||||++|||||+||+|+||++.+|+.++++++|||.+|++++++..++.++|+|+.|.|.+.+||...
T Consensus 80 ~~aD~~mr~FN~DGSEaemCGNGtRc~A~~l~~~~g~~~~~~~~ieT~aG~l~v~~~~dg~V~VdMg~P~f~~~~iP~~~ 159 (317)
T 3ejx_A 80 NGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQVKVDMGTPILKAQDVPTKL 159 (317)
T ss_dssp TTCSEEEEEEETTSCCCSCCHHHHHHHHHHHHHHTTCCSCCBCCEEETTEEEEEEECTTSCEEEECCCCBCCGGGTTCCS
T ss_pred CCCCEEEEEEcCCCCeeccCccHHHHHHHHHHHhcCCCCCceEEEEeCCeEEEEEEcCCCEEEEECCCCccCcccccccc
Confidence 57999999999999999999999999999999833666667899999999999999877789999999999999998754
Q ss_pred ccCccccccccceeeCCeeEEEEEEEcCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEeCCCeE
Q 017920 212 SANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQL 291 (364)
Q Consensus 212 ~~~~~~~~l~~~l~i~~~~~~~~~Vs~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~~~~~i 291 (364)
....+.+.+...+.+.+..+.+.+|+|||||+|+++++++..++++.+|+.++||.+|+|+.||+++||+|+++.++++|
T Consensus 160 ~~~~~~~~~~~~i~~~~~~~~~~~VsmGNPH~V~fvd~~~~~~dv~~~~l~~~Gp~ie~h~~FP~g~NV~Fv~v~~~~~i 239 (317)
T 3ejx_A 160 SGNKGEAVVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGPNLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHL 239 (317)
T ss_dssp CCSBTTBCCSEEEEETTEEEEEEEEESSSEEEEESSBTTCCCCCGGGSCHHHHHHHHHTCTTCTTCCEEEEEEEEETTEE
T ss_pred ccccccceeeEEEEeCCeEEEEEEEccCCCeEEEEEcCcccccCccccchhhhhhhhccCCcCCCCcEEEEEEEccCCEE
Confidence 32223344455667777778889999999999999983222225788899999999999999999999999999999999
Q ss_pred EEEEeeCCCCCCCCchhhHHHHHHHHHHhCCCCCceEEEccCccEEEEEeecCCeEEEEeceEEEEEEEEEeC
Q 017920 292 KMRVWERGAGATLACGTGACAVVVAAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364 (364)
Q Consensus 292 ~~R~fErGvgEt~ACGTGa~A~a~aa~~~g~~~~~~~V~~~GG~L~V~~~~~~~~V~i~G~A~~V~~G~i~i~ 364 (364)
++||||||+|||+|||||+||+|++++++|+.+.+++|.+|||.|.|+|.+++++|+|+|||++||+|+..+|
T Consensus 240 ~~Rv~ERGvGeTlACGTGacAaavaa~~~g~~~~~v~V~~pGG~L~I~~~~~~~~v~mtGpA~~Vf~G~~~~~ 312 (317)
T 3ejx_A 240 KMRVWERGAGATLACGTGACALVVAAVLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGSALLH 312 (317)
T ss_dssp EEEEEBTTTBSCSCCHHHHHHHHHHHHHTTSSCSEEEEEETTEEEEEEECTTTSCEEEEECCEEEEEEEEEC-
T ss_pred EEEEEECCCCcccCchHHHHHHHHHHHHhCCCCCeEEEECCCCEEEEEEECCCCeEEEEeCCEEEEEEEEehh
Confidence 9999999999999999999999999999999988999999999999999765568999999999999998765
No 2
>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid biosynthesis, isomerase, lysine biosy; 2.60A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.6e-73 Score=543.82 Aligned_cols=259 Identities=34% Similarity=0.549 Sum_probs=223.2
Q ss_pred ceEEEeeeCCCCcEEEEeCCCCCCCCCCHHHHHHhhhccCCcccceEEEEecCC---------------CCCcEEEEEEe
Q 017920 78 FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGV---------------NGTDYTMRIFN 142 (364)
Q Consensus 78 ~i~F~K~~g~GNdfvvid~~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~~---------------~~ad~~mRiFn 142 (364)
.|+|+||||+||||||||+++.. ..++++++++|||||+||||||+|+|.++. +.+||+|||||
T Consensus 1 ~~~F~K~hG~GNDFvvid~~~~~-~~~~~~~~~~lcdR~~GIGaDGli~v~~~~~~~~~~~~~~~~~~~~~ad~~mr~fN 79 (290)
T 3fve_A 1 HMIFAKGHGTQNDFVLLPDVDAE-LVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDSLPEGVRVTDWYMDYRN 79 (290)
T ss_dssp CEEEEEEESSSCEEEEEECTTCC-SCCCHHHHHHHHCTTTSCCCSEEEEEEEHHHHHHTTSCSSCCTTCCTTSEEEEEEE
T ss_pred CCeEEEEEeCCCcEEEEECCCCc-CCCCHHHHHHhcccCCCCCCCEEEEEeccccccccccccccccCCCCCCEEEEEEC
Confidence 37999999999999999998764 357799999999999999999999998742 35899999999
Q ss_pred CCCCcCCCcchhHHHHHHHHHHHccCCCCcEEEEEeCCeeEEEEEeeC----ceEEEEcCCCccCCCCCCCccccCcccc
Q 017920 143 SDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDD----GKVKVDMGEPILKASDVPTSLSANKDQS 218 (364)
Q Consensus 143 pDGsE~emCGNgtrc~a~~L~~~~g~~~~~~i~ieT~aG~l~v~v~~~----g~v~V~mg~p~~~~~~ip~~~~~~~~~~ 218 (364)
|||||++|||||+||+|+||++ +|+.++++++|||.+|++++++..+ +.++|+|+.|.+.+..
T Consensus 80 ~DGSEaemCGNg~Rc~a~~l~~-~g~~~~~~~~ieT~aG~~~v~~~~~~~~~~~V~VdMg~P~~~~~~------------ 146 (290)
T 3fve_A 80 ADGSAAQMCGNGVRVFAHYLRA-SGLEVRDEFVVGSLAGPRPVTCHHVEAAYADVSVDMGKANRLGAG------------ 146 (290)
T ss_dssp TTSCBCCTTCTTHHHHHHHHHH-TTSCCCSEEEEECTTCCEEEEEEEECSSEEEEEEECCCCEEEEEE------------
T ss_pred CCCCccccccchHHHHHHHHHH-hCCCCCceEEEEeCCeEEEEEEEcCCCceeEEEEECCCceeCCCc------------
Confidence 9999999999999999999999 8887777899999999999998754 5799999999885421
Q ss_pred ccccceeeCCeeEEEEEEEcCCCeEEEEeccCCcccccc--hhhHhhhC--cccccCCCCCCceeEEEEEEeCCCeEEEE
Q 017920 219 VVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVD--KLNLAEIG--PKFEHHSVFPARTNTEFVEIISPSQLKMR 294 (364)
Q Consensus 219 ~l~~~l~i~~~~~~~~~Vs~GnpH~Vv~v~~~~~~~~l~--~~~l~~lg--~~le~~~~fp~~~Nv~fv~v~~~~~i~~R 294 (364)
.+.+++..+++.+|+|||||+|++++ +++ .+++..+| |.++ |++||+++||+|+++.++++|++|
T Consensus 147 ----~~~~~~~~~~~~~vs~GnPH~V~~v~------d~~~~~~~~~~~g~~p~~~-~~~fP~g~NV~fv~v~~~~~i~~R 215 (290)
T 3fve_A 147 ----EAVVGGRRFHGLAVDVGNPHLACVDS------QLTVDGLAALDVGAPVSFD-GAQFPDGVNVEVLTAPVDGAVWMR 215 (290)
T ss_dssp ----EBC-----CEEEEEESSSEEEEEEET------TCCTTTTCSCCCC--CCBC-TTTCTTCCEEEEEECCBTTEEEEE
T ss_pred ----eEEecCceeeEEEEECCCCeEEEEec------CCcccccchhhcccccccC-cccCCCCeEEEEEEEcCCCeEEEE
Confidence 12233455678899999999999999 666 44555677 7785 489999999999999999999999
Q ss_pred EeeCCCCCCCCchhhHHHHHHHHHH-hCCCCCceEEEccCccEEEEEeecCCeEEEEeceEEEEEEEEEe
Q 017920 295 VWERGAGATLACGTGACAVVVAAVL-EGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363 (364)
Q Consensus 295 ~fErGvgEt~ACGTGa~A~a~aa~~-~g~~~~~~~V~~~GG~L~V~~~~~~~~V~i~G~A~~V~~G~i~i 363 (364)
+||||+|||+|||||+||+|+++.+ +|+.+..++|++|||.|+|+|+ +++|+|+|||++||+|++.+
T Consensus 216 v~ERGvgeTlaCGTGacA~a~~~~~~~g~~~~~v~v~~~GG~L~i~~~--~~~v~l~G~A~~v~~G~~~~ 283 (290)
T 3fve_A 216 VHERGVGETRSCGTGTVAAAVAALAAVGSPTGTLTVHVPGGEVVVTVT--DATSFLRGPSVLVARGDLAD 283 (290)
T ss_dssp EEBTTTBSCSCCHHHHHHHHHHHHHHTTCSSEEEEEEETTEEEEEEEC--SSCEEEEEEEEEEEEEEECH
T ss_pred EEeCCCccCcCccHHHHHHHHHHHHHcCCCCceEEEEcCCCEEEEEEe--CCEEEEEeCcEEEEEEEEEh
Confidence 9999999999999999999987765 5887778999999999999996 35899999999999999864
No 3
>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex, covalently bound inhibitor, isomer; HET: ZDP; 1.35A {Haemophilus influenzae} SCOP: d.21.1.1 d.21.1.1 PDB: 1gqz_A* 2gkj_A* 2q9h_A* 2q9j_A 1bwz_A
Probab=100.00 E-value=5.3e-63 Score=469.93 Aligned_cols=271 Identities=41% Similarity=0.758 Sum_probs=232.0
Q ss_pred eEEEeeeCCCCcEEEEeCCCCCCCCCCHHHHHHhhhccCCcccceEEEEecC-CCCCcEEEEEEeCCCCcCCCcchhHHH
Q 017920 79 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPG-VNGTDYTMRIFNSDGSEPEMCGNGVRC 157 (364)
Q Consensus 79 i~F~K~~g~GNdfvvid~~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~-~~~ad~~mRiFnpDGsE~emCGNgtrc 157 (364)
|.|+|||+.||||||+|++... ..+++++||+||+|++|+|+||++||.|+ .+.+||+||||||||+|++||||||||
T Consensus 1 ~~Ftk~~~~GNp~Vv~d~~~~~-~~l~~~~~q~ia~e~~G~g~~et~fv~~~~~~~~d~~~r~F~pdG~E~~~CGh~t~~ 79 (274)
T 2gke_A 1 MQFSKMHGLGNDFVVVDGVTQN-VFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQCGNGARC 79 (274)
T ss_dssp CEEEEEEETTEEEEEEECSSSC-CCCCHHHHHHHHCTTTSCCCSEEEEEECCSSTTSSEEEEEEETTSCEESCCHHHHHH
T ss_pred CeEEEEecCCCCEEEECCCccc-CCCCHHHHHHhhCcCCCcccceEEEECCCCCCCCCEEEEEECCCCChHHhCcChHHH
Confidence 6899999999999989987542 24789999999999999999999999875 347899999999999999999999999
Q ss_pred HHHHHHHHccCCCCcEEEEEeCCeeEEEEEeeCceEEEEcCCCccCCCCCCCccccCcccccccccee--eCCeeEEEEE
Q 017920 158 FARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELD--VDGVKWNVTC 235 (364)
Q Consensus 158 ~a~~L~~~~g~~~~~~i~ieT~aG~l~v~v~~~g~v~V~mg~p~~~~~~ip~~~~~~~~~~~l~~~l~--i~~~~~~~~~ 235 (364)
+|+||++ +|+.++++++++|.+|++++++..++.++|+|+.|.+.+.++|... .+ +...+. ..+..+++.+
T Consensus 80 ~a~~l~~-~g~~~~~~~~~et~aG~~~v~~~~~~~v~v~~~~p~~~~~~~~~~~-----~~-~~~~l~l~~~~~~~~~~~ 152 (274)
T 2gke_A 80 FARFVTL-KGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGEPIWEPAKIPFTA-----NK-FEKNYILRTDIQTVLCGA 152 (274)
T ss_dssp HHHHHHH-TTSCCCSEEEEECSSCEEEEEECTTSCEEEECCCCBCCGGGTTCCC-----SS-CCSSEEEECSSCEEEEEE
T ss_pred HHHHHHH-hCCCCCceEEEEeCCceEEEEEeCCCeEEEECCCcccccccCcccc-----cc-ccceeEEEeCCcEEEEEE
Confidence 9999999 8877777899999999999998645579999999988665555310 00 112232 3344567889
Q ss_pred EEcCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEeCCCeEEEEEeeCCCCCCCCchhhHHHHHH
Q 017920 236 VSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVV 315 (364)
Q Consensus 236 Vs~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~~~~~i~~R~fErGvgEt~ACGTGa~A~a~ 315 (364)
+++||||+|++++ +++.+++.++++.++.|+.||+++||+|+++.++.++++|+||||++||+|||||+||+++
T Consensus 153 v~~G~~h~vv~v~------~~~~~~l~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~~R~f~~Gv~Ed~acGSg~~A~a~ 226 (274)
T 2gke_A 153 VSMGNPHCVVQVD------DIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVA 226 (274)
T ss_dssp EESSSEEEEEECS------CTTTSCHHHHHHHHHTCTTCTTCCEEEEEEEEETTEEEEEEEETTTEECSCCHHHHHHHHH
T ss_pred EECCcCEEEEEeC------CCChhhHHHHhHHHhhCccCCCCcEEEEEEEeCCCEEEEEEECCCCCCCCCchHHHHHHHH
Confidence 9999999999998 6677788999999999999999999999987777889999999999999999999999999
Q ss_pred HHHHhCCCCCceEEEccCccEEEEEeecCCeEEEEeceEEEEEEEEEe
Q 017920 316 AAVLEGHAERRCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363 (364)
Q Consensus 316 aa~~~g~~~~~~~V~~~GG~L~V~~~~~~~~V~i~G~A~~V~~G~i~i 363 (364)
|+.++|+.+..+++.++||.|.|+|+.++++|+|+|+|++|++|++.+
T Consensus 227 ~~~~~g~~~~~~~v~~~gG~l~v~~~~~~~~v~l~G~a~~v~~G~i~~ 274 (274)
T 2gke_A 227 VGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 (274)
T ss_dssp HHHHTTSSCSEEEEEETTEEEEEEECCTTSCEEEEECCEEEEEEECCC
T ss_pred HHHHhCCCCCcEEEEcCCCEEEEEEEcCCCeEEEEeCcEEEEEEEEeC
Confidence 999999877678899999999999965333799999999999999854
No 4
>2otn_A Diaminopimelate epimerase; DAP, lysine ME lanthionine, isomerase; 2.40A {Bacillus anthracis str}
Probab=100.00 E-value=4.1e-62 Score=471.69 Aligned_cols=284 Identities=42% Similarity=0.759 Sum_probs=236.3
Q ss_pred ccccccCCcc-eEEEeeeCCCCcEEEEeCCCCCCCCCCHHHHH-HhhhccCCcccceEEEEecCCCCCcEEEEEEeCCCC
Q 017920 69 SFLDRRESGF-LHFVKYHGLGNDFILVDNRNSTEPRITPEQAA-KLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGS 146 (364)
Q Consensus 69 ~~~~~~~~~~-i~F~K~~g~GNdfvvid~~~~~~~~~~~~~~~-~lcdR~~GIGaDgvlfV~p~~~~ad~~mRiFnpDGs 146 (364)
...-|+..|+ |.|+|||++||||||+|+......++++++|| +||+|++|||+||++||.|+ +.+||+|||||||||
T Consensus 13 ~~~~~~~~m~~~~Ftk~~~~GN~~vVid~~~~~~~~l~~~~mq~~ia~e~~Gig~d~~~~v~p~-~~ad~~~R~Ftpdgs 91 (308)
T 2otn_A 13 GLVPRGSHMSQFSFTKMHGLGNSYIYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-DVAPVKMRMFNNDGS 91 (308)
T ss_dssp --CCCSCEEEEEEEEEEEETTEEEEEEETTTCCCCGGGHHHHHHHHHCTTTSCCCSEEEEEECC-SSSSEEEEEEETTSC
T ss_pred CcCCCCCccceEEEEEecCCCCCEEEEeCCCcccccCCHHHHHHHHhCCCCCccceEEEEeccC-CCCcEEEEEEcCCCC
Confidence 5566777776 99999999999999999765321115678999 99999999999999999763 578999999999999
Q ss_pred cCCCcchhHHHHHHHHHHHccCCCCcEEEEEeCCeeEEEEEe-eCceE---EEEcCCCccCCCCCCCccccCcccccccc
Q 017920 147 EPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQ-DDGKV---KVDMGEPILKASDVPTSLSANKDQSVVKS 222 (364)
Q Consensus 147 E~emCGNgtrc~a~~L~~~~g~~~~~~i~ieT~aG~l~v~v~-~~g~v---~V~mg~p~~~~~~ip~~~~~~~~~~~l~~ 222 (364)
|++||||||||+|+||++ .|+.++++++|||.+|++++++. .++.+ +++|+.|.+.+.+++.... .....+..
T Consensus 92 E~~~CGh~t~~~a~~l~~-~g~~~~~~~~~eT~aG~l~v~~~~~~~~v~~v~v~~~~P~~~~~~~~~~~~--~~~~~~~l 168 (308)
T 2otn_A 92 EGKSCGNGLRCVAKYAYE-HKLVEDTVFTIETLAGIVTAEVTVEEGKVTLAKIDMGAPRLTRAEIPMLGE--GETPFIRE 168 (308)
T ss_dssp EECCTTTTHHHHHHHHHH-TTSCSSSEEEEEETTEEEEEEEEESSSSEEEEEEEEECCBCSGGGTTCCSS--CCSSSEEE
T ss_pred hHHhCcChHHHHHHHHHH-cCCCCCCeEEEEeCCeEEEEEEEeCCCEEEEEEEECCCceecccceeeecc--ccccceeE
Confidence 999999999999999999 88777778999999999999984 45567 9999999886654543100 00000001
Q ss_pred ceeeCCeeEEEEEEEcCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEeCCCeEEEEEeeCCCCC
Q 017920 223 ELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGA 302 (364)
Q Consensus 223 ~l~i~~~~~~~~~Vs~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~~~~~i~~R~fErGvgE 302 (364)
.+.+.+..++++.+++|+||+|++++ +++..++.++++.++.|+.||.++|++|+++.++.++++|+||||++|
T Consensus 169 ~i~~~~~~~~~~~v~~G~ph~vv~v~------~~~~~~l~~l~p~~~~~~~~~~~~nv~~v~v~~~~~~~~R~fe~Gv~E 242 (308)
T 2otn_A 169 NFLYNNHRYAFTAVSMGNPHAVIFVD------DVEQAPLTTLGPVLETHEMFPERVNVEFIEILNEEEMNFRVWERGSGV 242 (308)
T ss_dssp EEEETTEEEEEEEEESSSEEEEEECS------CGGGSCTTTHHHHHHTCTTCTTCCEEEEEEEEETTEEEEEEECSSSCB
T ss_pred EEEECCEEEEEEEEeCCCCcEEEEcC------CcCHHHHHHHHHHHhhCccCCCCeeEEEEEEeCCCeEEEEEeCCCCCC
Confidence 22334555677889999999999998 666667788999999999999999999999888889999999999999
Q ss_pred CCCchhhHHHHHHHHHHhCCCCC--ceEEEccCccEEEEEeecCCeEEEEeceEEEEEEEEEe
Q 017920 303 TLACGTGACAVVVAAVLEGHAER--RCTVDLPGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLL 363 (364)
Q Consensus 303 t~ACGTGa~A~a~aa~~~g~~~~--~~~V~~~GG~L~V~~~~~~~~V~i~G~A~~V~~G~i~i 363 (364)
|+|||||+||+++|++++|+.+. .++|++|||.|.|+|.. +++|+|+|+|++|++|++.+
T Consensus 243 d~acGSg~~A~a~~~~~~g~~~~~~~~~v~~rgG~L~v~~~~-~~~V~l~G~a~~v~~G~l~~ 304 (308)
T 2otn_A 243 TQACGTGACAAVVASILNGKMERGKEITVHLAGGDLMIAWTE-EGNVLMKGPAEVICRGVYEY 304 (308)
T ss_dssp CSCCHHHHHHHHHHHHHTTSSCTTCCEEEECSSCEEEEEECT-TSCEEEEEECEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCCceEEEEEEc-CCcEEEEcCcEEEEEEEEEe
Confidence 99999999999999999998775 79999999999999963 34799999999999999975
No 5
>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis}
Probab=100.00 E-value=9.4e-56 Score=425.16 Aligned_cols=257 Identities=19% Similarity=0.282 Sum_probs=213.5
Q ss_pred EEEeeeCCCCcE-EEEeCCCCCCCCCCHHHHHHhhhccCCcccceEEEEecCCCCCcEEEEEEeCCCCcCCCcchhHHHH
Q 017920 80 HFVKYHGLGNDF-ILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCF 158 (364)
Q Consensus 80 ~F~K~~g~GNdf-vvid~~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~~~~ad~~mRiFnpDGsE~emCGNgtrc~ 158 (364)
.|+|||+.|||| ||+|+. .+++++|++||+| +|+||++||.|+ +.+||+|||||| |||++||||||||+
T Consensus 11 ~Ft~~~~~GNp~aVv~d~~-----~l~~~~mq~iA~~---~~~~et~fv~~~-~~ad~~~R~Fnp-gsE~~~CGh~t~~~ 80 (299)
T 3edn_A 11 AFTNKPNMGNPAGIVLDAD-----GLTEEEMQRIAEK---VGFNETSFVLSS-EVADIRMRYFTP-GYEMDLCGHGTVGT 80 (299)
T ss_dssp ESCSSTTSSEEEEEESCCT-----TCCHHHHHHHHHH---HCSSCEEEEECC-SSSSEEEEEECS-SCEESCCHHHHHHH
T ss_pred EeeCCCCCCCCEEEEECCC-----CCCHHHHHHHHHH---hCCCeEEEEecC-CCCCEEEEEECC-CCccccCccHHHHH
Confidence 399999999999 666664 3678999999998 899999999986 458999999999 99999999999999
Q ss_pred HHHHHHHccCC-CCcEEEEEeCCeeEEEEEe--eCc--eEEEEcCCCccCCCCCCCccccCccccccccceeeC----Ce
Q 017920 159 ARFIAELENLN-GKQSFTVHTGAGLIVPEIQ--DDG--KVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVD----GV 229 (364)
Q Consensus 159 a~~L~~~~g~~-~~~~i~ieT~aG~l~v~v~--~~g--~v~V~mg~p~~~~~~ip~~~~~~~~~~~l~~~l~i~----~~ 229 (364)
|+||++ +|+. .++++++||.+|++++++. .++ .++|+|+.|.+.+..++.. + +...|.+. +.
T Consensus 81 a~~l~~-~g~~~~~~~~~~eT~aG~l~v~~~~~~~~~~~v~v~~~~p~~~~~~~~~~-------~-~~~~l~~~~~~~~~ 151 (299)
T 3edn_A 81 IYALRE-RGLLEEKASLTIETKAGILPIQIGVNENGETFIKMRQTAPQFKDFAGSKE-------E-LAHSIGLEVNDLDV 151 (299)
T ss_dssp HHHHHH-TTCSCSCSEEEEEETTEEEEEEEEECTTSCEEEEEECCCCEEEECCSCHH-------H-HHHHTTCCGGGBCT
T ss_pred HHHHHH-cCCCCCCCEEEEEcCceEEEEEEEEcCCCcEEEEEEcCCccccCCCCCHH-------H-HHHHhCCChhHccc
Confidence 999999 7776 4678999999999999987 344 6899999999876544321 1 11222221 22
Q ss_pred eEEEEEEEcCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEe------CCCeEEEEEee---CCC
Q 017920 230 KWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEII------SPSQLKMRVWE---RGA 300 (364)
Q Consensus 230 ~~~~~~Vs~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~------~~~~i~~R~fE---rGv 300 (364)
.++++++++||||+|++++ +++. +.+++|.++.++.||+++|++|+++. ++.++++|+|| ||+
T Consensus 152 ~~~~~~vs~G~ph~vv~v~------~~~~--l~~~~p~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~R~f~p~~~Gv 223 (299)
T 3edn_A 152 SLPIVYGSTGNWTVIVPVK------NLDV--CERMKPNNEVFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGT 223 (299)
T ss_dssp TSCCEEEESSSEEEEEEBS------CHHH--HHHCCCCGGGHHHHCSSSTTCEEEEEESCCSSTTCSEEECEECCTTSSC
T ss_pred CCCeEEEEcCCCeEEEEeC------CHHH--HhhCCCCHHHHHHHHhhcCccEEEEEEecCCCCCccEEEeccccccCCC
Confidence 4678899999999999998 5544 57899999998889999999998875 45679999999 899
Q ss_pred CCCCCchhhHHHHHHHHHHhCCCC--C--ceEEEc-----cCccEEEEEeec-C---CeEEEEeceEEEEEEEEEe
Q 017920 301 GATLACGTGACAVVVAAVLEGHAE--R--RCTVDL-----PGGPLDIEWKEE-D---NHVYMTGPAEVVFYGSVLL 363 (364)
Q Consensus 301 gEt~ACGTGa~A~a~aa~~~g~~~--~--~~~V~~-----~GG~L~V~~~~~-~---~~V~i~G~A~~V~~G~i~i 363 (364)
+||+|||||+||+|.|+.+++..+ . .+.+.| |||.|.|+|+.+ + .+|+|+|+|++|++|+|.|
T Consensus 224 ~EdpatGSa~~ala~~l~~~~~~~~~~~~~~~v~Qg~~~~rgG~l~v~~~~~~~~~~~~v~l~G~a~~v~~G~i~i 299 (299)
T 3edn_A 224 IEDPVTGTASGVMGAYYATYVEKDFDHEMELIVEQGQEIHKDGRVTVYVTKDVESEKLQIDIAGTAVYVKEFEVLI 299 (299)
T ss_dssp SEESSCHHHHHHHHHHHHHHTCCCCSSEEEEEEEECGGGTCCEEEEEEEECCTTCSSCEEEEEECEEEEEEEEEEC
T ss_pred cCCCcccHHHHHHHHHHHHcCCCCCCCceEEEEeccCccCCCeEEEEEEEecCCCCeeEEEEEeEEEEEEEEEEEC
Confidence 999999999999999888887654 2 477887 999999999763 2 3899999999999999986
No 6
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiot biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A
Probab=100.00 E-value=1.2e-52 Score=405.05 Aligned_cols=269 Identities=13% Similarity=0.174 Sum_probs=201.1
Q ss_pred cccccccCCcceE------EEeeeCCCCcE-EEEeCCCCCCCCCCHHHHHHhhhccCCcccceEEEEecCCCCCcEEEEE
Q 017920 68 TSFLDRRESGFLH------FVKYHGLGNDF-ILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRI 140 (364)
Q Consensus 68 ~~~~~~~~~~~i~------F~K~~g~GNdf-vvid~~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~~~~ad~~mRi 140 (364)
+|.|.++. |.++ |+|+|+.|||| ||+|+. .+++++||+||+| +|+||++||.|. +.+||+|||
T Consensus 3 ~~~~~~~~-m~~~~~~vD~Ft~~~~~GNp~aVv~~~~-----~l~~~~mq~iA~e---~~~set~fv~p~-~~~d~~~R~ 72 (307)
T 1qya_A 3 TSLYKKAG-LKPQVYHVDAFTSQPFRGNSAGVVFPAD-----NLSEAQMQLIARE---LGHSETAFLLHS-DDSDVRIRY 72 (307)
T ss_dssp ---------CCCEEEEEEETCSSTTCSEEEEEEECCT-----TCCHHHHHHHHHH---HCCSCEEEEECC-SSSSEEEEE
T ss_pred ccccccCC-CceEEEEEEeccCCCCCcceeEEEeCCC-----CCCHHHHHHHHHH---hCCceEEEEEec-CCCceEEEE
Confidence 45566554 3332 89999999999 555554 3678999999987 689999999864 468999999
Q ss_pred EeCCCCcCCCcchhHHHHHHHHHHHccCCCCc-EEEEEeCCeeEEEEEeeC---ceEEEEcCCCccCCCCCCCccccCcc
Q 017920 141 FNSDGSEPEMCGNGVRCFARFIAELENLNGKQ-SFTVHTGAGLIVPEIQDD---GKVKVDMGEPILKASDVPTSLSANKD 216 (364)
Q Consensus 141 FnpDGsE~emCGNgtrc~a~~L~~~~g~~~~~-~i~ieT~aG~l~v~v~~~---g~v~V~mg~p~~~~~~ip~~~~~~~~ 216 (364)
|||| +|++||||||||+|+ |++ .|+..++ ++.+||.+|++++++..+ +.++++|+.|.+.+ .++.. ..
T Consensus 73 Ftp~-~E~~~CGh~t~~~a~-l~~-~g~~~~~~~~~~et~aG~l~v~~~~~~~~~~v~~~~p~~~~~~-~i~~~----~~ 144 (307)
T 1qya_A 73 FTPT-VEVPICGHATVAAHY-VRA-KVLGLGNCTIWQTSLAGKHRVTIEKHNDDYRISLEQGTPGFEP-PLEGE----TR 144 (307)
T ss_dssp ECSS-SEECC--CHHHHHHH-HHH-HHHTCCSEEEEEECC--CEEEEEEEETTEEEEEEECCCCEECC-CBCTH----HH
T ss_pred ECCC-CEeCCCchHHHHHHH-HHH-hCCCCCCceEEEEcCCeEEEEEEEccCCcceEEEecCCCcccC-cCCcc----Ch
Confidence 9999 799999999999999 998 7766555 799999999999998643 46788888776641 23310 00
Q ss_pred ccccccceeeC----CeeEEEEEEEcCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEe----CC
Q 017920 217 QSVVKSELDVD----GVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEII----SP 288 (364)
Q Consensus 217 ~~~l~~~l~i~----~~~~~~~~Vs~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~----~~ 288 (364)
.+ +...+.+. ...++++++++|+||+|++++ +++. +.+++|.++.+..||+++|+.++.+. ++
T Consensus 145 ~~-~~~~lg~~~~~~~~~~~~~~v~~G~ph~vv~v~------~~~~--l~~l~p~~~~~~~~~~~~~~~~v~v~~~~~~~ 215 (307)
T 1qya_A 145 AA-IINALHLTEDDILPGLPIQVATTGHSKVMIPLK------PEVD--IDALSPDLNALTAISKKIGCNGFFPFQIRPGK 215 (307)
T ss_dssp HH-HHHHTTCCGGGBCTTCCBEEEESSSCEEEEEBC------TTSC--GGGCCCCHHHHHHHHHHHTCCCEEEEEECTTS
T ss_pred HH-HHHHcCCCHHHhcccCCcEEEeCCCCEEEEEEC------CHHH--HhhCCCCHHHHHHHHhhcCCcEEEEEEEcCCC
Confidence 11 11222221 123567889999999999998 4443 56889999988888888887776653 56
Q ss_pred CeEEEEEeeC--CCCCCCCchhhHHHHHHHHHHhCCCC----C-ceEEEc-----cCccEEEEEeecC---CeEEEEece
Q 017920 289 SQLKMRVWER--GAGATLACGTGACAVVVAAVLEGHAE----R-RCTVDL-----PGGPLDIEWKEED---NHVYMTGPA 353 (364)
Q Consensus 289 ~~i~~R~fEr--GvgEt~ACGTGa~A~a~aa~~~g~~~----~-~~~V~~-----~GG~L~V~~~~~~---~~V~i~G~A 353 (364)
.++++|+||| |++||+|||||+||+|+|+.++|+.+ . .+.|.| |||.|.|+|..++ ++|+|+|+|
T Consensus 216 ~~~~~R~f~p~~Gv~EdpacGSaa~ala~~~~~~g~~~~~~~~~~~~v~Qg~~~~rgG~l~v~~~~~~~~~~~V~l~G~a 295 (307)
T 1qya_A 216 NETDGRMFSPAIGIVEDPVTGNANGPMGAWLVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTA 295 (307)
T ss_dssp SEEEECEEEGGGTEEEESSCHHHHHHHHHHHHHTTCSCCCSSEEEEEEEECGGGTCCEEEEEEEEEETTEEEEEEEEECE
T ss_pred CeEEEEecCCcCCCCCCCCcccchHHHHHHHHHcCccCcCCCcceEEEEcccccCCCeEEEEEEEecCCCeeEEEEEEEE
Confidence 7899999999 99999999999999999999988876 2 588887 8999999996322 269999999
Q ss_pred EEEEEEEEEe
Q 017920 354 EVVFYGSVLL 363 (364)
Q Consensus 354 ~~V~~G~i~i 363 (364)
++|++|++.+
T Consensus 296 ~~v~~G~l~~ 305 (307)
T 1qya_A 296 VILFHAEWAI 305 (307)
T ss_dssp EEEEEEECSS
T ss_pred EEEEEEEEEE
Confidence 9999999865
No 7
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A
Probab=100.00 E-value=5.2e-51 Score=392.30 Aligned_cols=253 Identities=16% Similarity=0.195 Sum_probs=205.5
Q ss_pred EEeeeCCCCcEEEEeCCCCCCCCCCHHHHHHhhhccCCcccceEEEEecCCCCCcEEEEEEeCCCCcCCCcchhHHHHHH
Q 017920 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFAR 160 (364)
Q Consensus 81 F~K~~g~GNdfvvid~~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~~~~ad~~mRiFnpDGsE~emCGNgtrc~a~ 160 (364)
|+|+++.||++.||.... .+++++||+||++ +|+||++||.|+.+.+||+||||||| +|++||||||||+|+
T Consensus 30 Ft~~~~~GNp~aVv~~~~----~l~~~~mq~IA~e---~~~sEt~Fv~~~~~~~d~~lR~Ftp~-~E~~~CGhat~~~a~ 101 (298)
T 1xub_A 30 FASVPLEGNPVAVFFDAD----DLPPAQMQRIARE---MNLSESTFVLKPRNGGDALIRIFTPV-NELPFAGAPLLGTAI 101 (298)
T ss_dssp TCSSTTSSEEEEEECSGG----GSCHHHHHHHHHH---HCSSCEEEEECCSSSSSEEEEEECSS-CEESCCHHHHHHHHH
T ss_pred ccCCCCCCCcEEEEECCC----CCCHHHHHHHHHH---hCCceEEEEecCCCCCcEEEEEEcCC-CCcCcCchHHHHHHH
Confidence 889999999996664332 3678999999998 79999999988633689999999999 799999999999999
Q ss_pred HHHHHccCCCCcEEEEEeCCeeEEEEEeeC----ceEEEEcCCCccCCCCCCCccccCccccccccceeeCCeeEEEEEE
Q 017920 161 FIAELENLNGKQSFTVHTGAGLIVPEIQDD----GKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCV 236 (364)
Q Consensus 161 ~L~~~~g~~~~~~i~ieT~aG~l~v~v~~~----g~v~V~mg~p~~~~~~ip~~~~~~~~~~~l~~~l~i~~~~~~~~~V 236 (364)
||++ + + +++++.+||.+|++++++..+ +.++++|+.|.+.+...+ .+ +...|.+.+..++++++
T Consensus 102 ~l~~-~-~-~~~~~~~eT~aG~l~v~~~~~~~~~~~v~m~~p~~~~~~~~~~--------~~-~~~~lg~~~~~~~~~~v 169 (298)
T 1xub_A 102 ALGA-H-T-DNHRLYLETQMGTIAFELERQNGSVIAASMDQPIPTWTALGRD--------AE-LLKALGISDSTFPIEIY 169 (298)
T ss_dssp HHHT-T-C-CCSEEEEEETTEEEEEEEEEETTEEEEEEEECCCCEEEECSCH--------HH-HHHHHTCSCCSSCCEEE
T ss_pred HHHH-h-C-CCCeEEEEeCCEEEEEEEEcCCCceEEEEEECCCCcccCCCCh--------HH-HHHhcCCCCcCCCeEEE
Confidence 9998 6 4 567899999999999998654 256777766655432211 11 22334444444567889
Q ss_pred EcCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEeCCCeEEEEEeeC--CCCCCCCchhhHHHHH
Q 017920 237 SMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWER--GAGATLACGTGACAVV 314 (364)
Q Consensus 237 s~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~~~~~i~~R~fEr--GvgEt~ACGTGa~A~a 314 (364)
++|+||+|++++ +++ ++.+++|.++.+..||. +|+.|+...+ ..+++|+||| |++||||||||+||+|
T Consensus 170 ~~G~ph~vv~v~------~~~--~l~~l~p~~~~~~~~~~-~~v~~~~~~~-~~~~~R~f~p~~Gv~EdpatGSaa~Ala 239 (298)
T 1xub_A 170 HNGPRHVFVGLP------SID--ALSALHPDHRALSNFHD-MAINCFAGAG-RRWRSRMFSPAYGVVEDAATGSAAGPLA 239 (298)
T ss_dssp ESSSEEEEEECS------SHH--HHHHCCCCHHHHTTSCS-CEEEEEEEET-TEEEEEEEBGGGTBSSCSCCHHHHHHHH
T ss_pred ECCCCEEEEEEC------CHH--HHHhCCCCHHHHHhhhc-cEEEEEEcCC-CCEEEEeCccccCCCCcchhhHHHHHHH
Confidence 999999999998 544 36788999998888887 8999988744 4599999999 9999999999999999
Q ss_pred HHHHHhCCC-CC-ceEEEc-----cCccEEEEEeecCCe---EEEEeceEEEEEEEEEe
Q 017920 315 VAAVLEGHA-ER-RCTVDL-----PGGPLDIEWKEEDNH---VYMTGPAEVVFYGSVLL 363 (364)
Q Consensus 315 ~aa~~~g~~-~~-~~~V~~-----~GG~L~V~~~~~~~~---V~i~G~A~~V~~G~i~i 363 (364)
+|+.++|+. +. .+.+.| |||.|.|+|+.++++ |+|+|+|++|++|++.+
T Consensus 240 ~~l~~~g~~~~~~~~~v~QG~~~~rgG~L~v~~~~~~~~~~~V~l~G~a~~v~~G~i~~ 298 (298)
T 1xub_A 240 IHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL 298 (298)
T ss_dssp HHHHHTTSSCTTCCEEEEECGGGTCCEEEEEEEEEETTEEEEEEEEEEEEEEEEEEECC
T ss_pred HHHHHcCCCCCCCEEEEEcccccCCCEEEEEEEEcCCCcEEEEEEEEEEEEEEEEEEEC
Confidence 999998876 54 788988 999999999754444 99999999999999864
No 8
>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-51 Score=394.29 Aligned_cols=261 Identities=16% Similarity=0.213 Sum_probs=200.5
Q ss_pred EEEeeeCCCCcEEEEeC--CCCCCCCCCHHHHHHhhhccCCcccceEEEEecCC-CCCcEEEEEEeCCCCcCCCcchhHH
Q 017920 80 HFVKYHGLGNDFILVDN--RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGV-NGTDYTMRIFNSDGSEPEMCGNGVR 156 (364)
Q Consensus 80 ~F~K~~g~GNdfvvid~--~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~~-~~ad~~mRiFnpDGsE~emCGNgtr 156 (364)
.|+||++.||||+||+. .+. ..+++++||+||+| +|+||++||.++. +.+||+||||||| +|++|||||||
T Consensus 12 ~Ft~~~~~GNp~~Vv~~~~~d~--~~l~~~~mq~iA~~---~~~set~fv~~~~~~~~d~~lR~Ftp~-~E~~~CGh~t~ 85 (300)
T 1ym5_A 12 VFTEKPFMGNPVAVINFLEIDE--NEVSQEELQAIANW---TNLSETTFLFKPSDKKYDYKLRIFTPR-SELPFAGHPTI 85 (300)
T ss_dssp ETCSSTTSSEEEEEEECTTSCG--GGSCHHHHHHHHHH---HTSSCEEEEECCSSTTCSEEEEEECSS-CEESCCHHHHH
T ss_pred eccCCCCCCCCeEEEEeccCCC--CCCCHHHHHHHHHH---hCCCceEEEecCCCCCCcEEEEEEcCC-CCcCcCCCcHH
Confidence 49999999999999842 111 13678999999998 7999999998753 4689999999999 79999999999
Q ss_pred HHHHHHHHHccCCC-CcEEEEEeCCeeEEEEEeeCceEEEEcCCCccCCCCCCCccccCccccccccceeeCCeeEEEEE
Q 017920 157 CFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTC 235 (364)
Q Consensus 157 c~a~~L~~~~g~~~-~~~i~ieT~aG~l~v~v~~~g~v~V~mg~p~~~~~~ip~~~~~~~~~~~l~~~l~i~~~~~~~~~ 235 (364)
|+|+||++ .+... ++++.+||.+|++++++. ++. +.|+.|.+.+..++.. ..+.+...+.+. ..+++++
T Consensus 86 ~~a~~l~~-~g~~~~~~~~~~et~aG~l~v~~~-~~~--v~m~~p~~~~~~i~~~-----~~~~~~~~lg~~-~~~~~~~ 155 (300)
T 1ym5_A 86 GSCKAFLE-FTKNTTATSLVQECKIGAVPITIN-EGL--ISFKAPMADYESISSE-----MIADYEKAIGLK-FIKPPAL 155 (300)
T ss_dssp HHHHHHHH-HTTCSCCSEEEEEETTEEEEEEEE-TTE--EEEECSCCEEEECCHH-----HHHHHHHHHTSC-CSSCCEE
T ss_pred HHHHHHHH-hCCCCCCceEEEEeCCeEEEEEEc-CCE--EEEecCCCCccccCcc-----cHHHHHHhcCCC-ccCCcEE
Confidence 99999999 77665 578999999999999985 344 5577776543333310 011122234332 2345788
Q ss_pred EEcCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCc---eeEEE-EEEe---CCCeEEEEEeeC--CCCCCCCc
Q 017920 236 VSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPAR---TNTEF-VEII---SPSQLKMRVWER--GAGATLAC 306 (364)
Q Consensus 236 Vs~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~---~Nv~f-v~v~---~~~~i~~R~fEr--GvgEt~AC 306 (364)
+++|+||+|++++ +++. +..++|.++.+..||++ .++++ +... ++.++++|+||| |++||+||
T Consensus 156 v~~G~ph~vv~v~------~~~~--l~~l~p~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~R~f~p~~Gv~Edpat 227 (300)
T 1ym5_A 156 LHTGPEWIVALVE------DAET--CFNANPNFAMLAHQTKQNDHVGIILAGPKKEAAIKNSYEMRAFAPVINVYEDPVC 227 (300)
T ss_dssp EESSSEEEEEECS------CHHH--HHHCCCCHHHHHHHHHHHTCCEEEEEEECTTCSSTTEEEEEEEEGGGTEEEESSC
T ss_pred EEcCCCEEEEEEC------CHHH--HHhCCCCHHHHHHHHhhcCCcEEEEEEecCCCCCCceEEEEecccccCCCCCCcc
Confidence 9999999999998 5443 47788888887767532 24443 4433 456899999999 99999999
Q ss_pred hhhHHHHHHHHHHhCCCCC--ceEEE-----ccCccEEEEEeec-C--CeEEEEeceEEEEEEEEEeC
Q 017920 307 GTGACAVVVAAVLEGHAER--RCTVD-----LPGGPLDIEWKEE-D--NHVYMTGPAEVVFYGSVLLN 364 (364)
Q Consensus 307 GTGa~A~a~aa~~~g~~~~--~~~V~-----~~GG~L~V~~~~~-~--~~V~i~G~A~~V~~G~i~i~ 364 (364)
|||+||+|+|+.+++..+. .++|+ .|||.|.|+|+.+ + ++|+|+|+|++|++|++.+|
T Consensus 228 GSaa~ala~~~~~~~~~~~~~~~~v~QG~~~~rgG~L~v~~~~~~~~~~~V~v~G~a~~v~~G~i~~~ 295 (300)
T 1ym5_A 228 GSGSVALARYLQEVYKFEKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKVH 295 (300)
T ss_dssp HHHHHHHHHHHHHHHCCSSCEEEEEEECGGGTCCEEEEEEEEECTTSCEEEEEEECEEEEEEEEEEEC
T ss_pred hHHHHHHHHHHHHhCCCCCceEEEEEcccccCCCeEEEEEEEccCCCcceEEEEEEEEEEEEEEEEEe
Confidence 9999999988887765553 68899 7999999999643 2 36999999999999999875
No 9
>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein initiative, structural genomics, PSI, midwest center for ST genomics; 1.50A {Pseudomonas aeruginosa} SCOP: d.21.1.2 d.21.1.2
Probab=100.00 E-value=1.6e-50 Score=386.94 Aligned_cols=255 Identities=16% Similarity=0.185 Sum_probs=198.5
Q ss_pred EEeeeCCCCcEEEEeCCCCCCCCCCHHHHHHhhhccCCcccceEEEEecCCCCCcEEEEEEeCCCCcCCCcchhHHHHHH
Q 017920 81 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFAR 160 (364)
Q Consensus 81 F~K~~g~GNdfvvid~~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~~~~ad~~mRiFnpDGsE~emCGNgtrc~a~ 160 (364)
|+|||+.||||+||+... .++++++++||+| +|+||++||.|+.+.+||+||||||| +|++||||||||+|+
T Consensus 13 Ft~~~~~GNp~~Vv~~~~----~l~~~~mq~ia~~---~~~set~fv~~~~~~~d~~~R~Ftp~-~E~~~CGh~t~~~a~ 84 (288)
T 1u0k_A 13 FAERPLTGNGLAVFDDAS----ALDDAAMQAWTRE---LRQFESIFLLPGDDPRAFRARIFTLE-EELPFAGHPLLGAAA 84 (288)
T ss_dssp SCSSTTCSEEEEEESCCT----TCCHHHHHHHHHH---HCCSEEEEEEECSCTTEEEEEEEESS-CBCCSCCTHHHHHHH
T ss_pred ecCCCCCCCceEEEeCCC----CCCHHHHHHHHHH---hCCCeEEEEecCCCCCcEEEEEECCC-CeeCcCchHHHHHHH
Confidence 999999999998776543 3678999999997 69999999988533789999999999 799999999999999
Q ss_pred HHH-HHccCCCCcEEEEEeCCeeEEEEEe-eCce-EEEEc-CCCccCCCCCCCccccCccccccccceeeCCee---EEE
Q 017920 161 FIA-ELENLNGKQSFTVHTGAGLIVPEIQ-DDGK-VKVDM-GEPILKASDVPTSLSANKDQSVVKSELDVDGVK---WNV 233 (364)
Q Consensus 161 ~L~-~~~g~~~~~~i~ieT~aG~l~v~v~-~~g~-v~V~m-g~p~~~~~~ip~~~~~~~~~~~l~~~l~i~~~~---~~~ 233 (364)
||+ + .|+.+++++++||.+|++++++. +++. ++++| +.|.+.. .++.. ...+ +...+.+.... +++
T Consensus 85 ~l~~~-~g~~~~~~~~~et~aG~~~v~~~~~~~~~~~v~m~~~p~~~~-~~~~~----~~~~-~~~~lg~~~~~~~~~~~ 157 (288)
T 1u0k_A 85 LLHHL-RGGDNEQHWTLHLASKSVALRSVRAGSGFYAEMDQGRAEFGA-TPDAG----TCRW-FAEAFSLSANDLSGHPP 157 (288)
T ss_dssp HHHHH-HCCSSCEEEEEECSSCEEEEEEEEETTEEEEEEEEEECEECC-CCCHH----HHHH-HHHHTTCCGGGBCSSCC
T ss_pred HHHHh-cCCCCCceEEEEeCCeEEEEEEEeCCCceeeEEEcCCCCccc-cCCcc----cHHH-HHHHhCCChHHhccCCc
Confidence 999 8 78776678999999999999986 3443 45666 5555422 22210 0011 11222222111 467
Q ss_pred EEEEcCCCeEEEEeccCCcccccchhhHhhhC--cccccCCCCC-CceeEEEEEEeCCCeEEEEEee-CCCCCCCCchhh
Q 017920 234 TCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIG--PKFEHHSVFP-ARTNTEFVEIISPSQLKMRVWE-RGAGATLACGTG 309 (364)
Q Consensus 234 ~~Vs~GnpH~Vv~v~~~~~~~~l~~~~l~~lg--~~le~~~~fp-~~~Nv~fv~v~~~~~i~~R~fE-rGvgEt~ACGTG 309 (364)
+++++||||+|++++ . .++.+++ |.++ +.+ | .++|+.|+. +++++++|+|| +|++||+|||||
T Consensus 158 ~~v~~G~p~~vv~v~-~--------~~l~~l~~~p~~~-~~~-~~~g~~~~~~~--~~~~~~~R~f~~~Gv~Ed~acGSg 224 (288)
T 1u0k_A 158 RVVSTGLPYLLLPVT-A--------EALGRARQVNDLQ-EAL-DKLGAAFVYLL--DVDGREGRTWDNLGLVEDVATGSA 224 (288)
T ss_dssp EEEESSSCEEEEEBC-H--------HHHHTCCCCSCCH-HHH-HHHTCSEEEEE--ETTTTEEECBCTTSCSBCSCCHHH
T ss_pred EEEeCCCCeEEEEec-H--------HHHhhhhcCCChh-Hhh-cccCceEEEEc--CCCeEEEEeccCCCCcCcccchHH
Confidence 789999999999985 2 2567788 8888 655 5 578886654 33479999999 999999999999
Q ss_pred HHHHHHHHHHhCCCC--CceEEEc-----cCccEEEEEeecCCeEEEEeceEEEEEEEEEeC
Q 017920 310 ACAVVVAAVLEGHAE--RRCTVDL-----PGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364 (364)
Q Consensus 310 a~A~a~aa~~~g~~~--~~~~V~~-----~GG~L~V~~~~~~~~V~i~G~A~~V~~G~i~i~ 364 (364)
+||+++|+.++|+.+ ..+.+.| |||.|.|+|..+ +.|+|+|+|++|++|++.++
T Consensus 225 a~ala~~~~~~g~~~~~~~~~v~Qg~~~~rgg~l~v~~~~~-~~v~l~G~a~~v~~G~l~~~ 285 (288)
T 1u0k_A 225 AGPVAAYLVEYGLAARGEPFVLHQGRFLERPSRLDVQVATD-GSVRVGGHVQLLARAELLTS 285 (288)
T ss_dssp HHHHHHHHHHTTSSCTTSCEEEEECGGGTCCEEEEEEECSS-SEEEEEEEEEEEEEEEECSC
T ss_pred HHHHHHHHHHcCCCCCCcEEEEECCCeeCCCcEEEEEEEcC-CcEEEEEEEEEEEEEEEEEe
Confidence 999999999988766 3788887 999999999642 35999999999999999764
No 10
>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural PSI, protein structure initiative; 2.30A {Enterococcus faecalis} SCOP: d.21.1.2
Probab=100.00 E-value=3.8e-50 Score=379.54 Aligned_cols=245 Identities=14% Similarity=0.165 Sum_probs=193.3
Q ss_pred EEEeeeCCCCcEEEEeCCCCCCCCCCHHHHHHhhhccCCcccceEEEEecCCCCCcEEEEEEeCCCCcCCCcchhHHHHH
Q 017920 80 HFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFA 159 (364)
Q Consensus 80 ~F~K~~g~GNdfvvid~~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~~~~ad~~mRiFnpDGsE~emCGNgtrc~a 159 (364)
-|+|||+.||||+||+..+ .+++++|++||+| +|+||++||.++ ++||+||||||| +|++||||||||+|
T Consensus 10 ~Ft~~~~~GNp~~Vv~~~~----~l~~~~~q~ia~~---~~~set~fv~~~--~~d~~~R~Ftp~-~E~~~CGh~t~~~a 79 (262)
T 1s7j_A 10 AFAEEVFKGNPAAVYVLEK----WLPEAVMQNIAIE---NNLSETAFTVKE--GQSYALRWFTPE-REIDLCGHATLATA 79 (262)
T ss_dssp ETCSSTTSSEEEEEEECSS----CCCHHHHHHHHHH---HCCSCEEEEEEE--TTEEEEEEECSS-SEESCCHHHHHHHH
T ss_pred eccCCCCCCCCeEEEECCC----CCCHHHHHHHHHH---hCCCEEEEEEcC--CCCEEEEEECCC-CccCcCchHHHHHH
Confidence 4999999999997775543 3678999999997 789999999875 579999999999 89999999999999
Q ss_pred HHHHHHccCCCCcEEEEEeCCeeEEEEEeeCceEEEEcCCCccCCCCCCCccccCccccccccceeeCCeeEEEEEEEcC
Q 017920 160 RFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMG 239 (364)
Q Consensus 160 ~~L~~~~g~~~~~~i~ieT~aG~l~v~v~~~g~v~V~mg~p~~~~~~ip~~~~~~~~~~~l~~~l~i~~~~~~~~~Vs~G 239 (364)
+||++ ++..+++++.+||.+|++++++.+ +. +.|+.|.+.+..++.. .+ +...+.+.. ..++++
T Consensus 80 ~~l~~-~g~~~~~~~~~et~~G~l~v~~~~-~~--v~m~~p~~~~~~~~~~------~~-~~~~l~~~~----~~~~~~- 143 (262)
T 1s7j_A 80 FVLFN-YYSVAEETLHFTSQSGPLAVTKKE-EY--YYLDFPYILPERIPIL------PE-YEAALGTKI----YEAYLG- 143 (262)
T ss_dssp HHHHH-HSCCCSSEEEEEETTEEEEEEEET-TE--EEEEEECCCCEECCCC------HH-HHHHHTSCC----SEEEES-
T ss_pred HHHHH-hcCCCCCeEEEEeCceEEEEEEEC-CE--EEEecCCCCccCCCCh------HH-HHHHcCCCh----HHeEec-
Confidence 99999 787766789999999999999854 34 5566666544334310 11 122233221 123565
Q ss_pred CCeEEEEeccCCcccccchhhHhhhCcccccCCCCCC--ceeEEEEEEeCCCeEEEEEeeC--CCCCCCCchhhHHHHHH
Q 017920 240 NPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPA--RTNTEFVEIISPSQLKMRVWER--GAGATLACGTGACAVVV 315 (364)
Q Consensus 240 npH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~--~~Nv~fv~v~~~~~i~~R~fEr--GvgEt~ACGTGa~A~a~ 315 (364)
||+|++++ +++ ++.+++|.++.+..||. ++|+ |++. ++.++++|+||| |++||+|||||+||+|+
T Consensus 144 -ph~vv~v~------~~~--~l~~~~p~~~~~~~~~~~~gv~v-f~~~-~~~~~~~R~f~p~~Gv~Ed~acGS~~~ala~ 212 (262)
T 1s7j_A 144 -RDLFFVLK------DEE--TVAKITPDFSALKALDLGVGVIV-TASG-DSVDFVSRTFFPKLRINEDPVCGSAHANLIP 212 (262)
T ss_dssp -SSEEEECS------CHH--HHHHCCCCHHHHHHCSSCSSEEE-EEEC-SSSSEEEEEEEGGGTEEEESCCSTTHHHHHH
T ss_pred -CeEEEEEC------CHH--HHHhCCCCHHHHHhhcccCcEEE-EEec-CCCeEEEEeccccCCCCCcCcchHHHHHHHH
Confidence 99999998 443 46789999998888986 7888 7764 667899999999 89999999999999997
Q ss_pred HHHHhCCCCCceEEEc---cCccEEEEEeecCCeEEEEeceEEEEEEEEEeC
Q 017920 316 AAVLEGHAERRCTVDL---PGGPLDIEWKEEDNHVYMTGPAEVVFYGSVLLN 364 (364)
Q Consensus 316 aa~~~g~~~~~~~V~~---~GG~L~V~~~~~~~~V~i~G~A~~V~~G~i~i~ 364 (364)
|+.++ .....+.+.| |||.|.|+|++ ++|+|+|+|++|++|++.+.
T Consensus 213 ~~~~~-~~~~~~~v~Qg~~rgG~l~v~~~~--~~V~i~G~a~~v~~G~l~~~ 261 (262)
T 1s7j_A 213 YWGKR-LNQTTLSAYQVSPRGGFLTCEVKE--NRVIIGGTAKLFAKGEAYLP 261 (262)
T ss_dssp HHHHH-HTCSEEEEEECSSSCCEEEEEEET--TEEEEEECEEEEEEEEEEC-
T ss_pred HHHHh-CCCceEEEEecCCCCEEEEEEEEC--CEEEEEEEEEEEEEEEEEEe
Confidence 76654 2233678877 99999999963 58999999999999999763
No 11
>2azp_A Hypothetical protein PA1268; PA1268,APC5861,sulfur SAD, structural genomics, PSI, protein structure initiative; 2.13A {Pseudomonas aeruginosa}
Probab=100.00 E-value=3e-46 Score=361.94 Aligned_cols=265 Identities=16% Similarity=0.225 Sum_probs=201.2
Q ss_pred cceEEEeeeCCCCcE-EEEeCC-CCCCCCCC-HHHHHHhhhc----cCCcccc--------eEEEEecCCCCCcEEEEEE
Q 017920 77 GFLHFVKYHGLGNDF-ILVDNR-NSTEPRIT-PEQAAKLCDR----NFGIGAD--------GVIFAMPGVNGTDYTMRIF 141 (364)
Q Consensus 77 ~~i~F~K~~g~GNdf-vvid~~-~~~~~~~~-~~~~~~lcdR----~~GIGaD--------gvlfV~p~~~~ad~~mRiF 141 (364)
..+.|+|+|+.|||| ||+|+. ..+ ..+ ++++++||++ ++||++| +++++.|.++.+||+||||
T Consensus 4 ~~~~~vd~ft~GNp~~Vv~~~~~~l~--~~~~~~~mq~ia~e~~~~r~~l~sEprg~~~~~t~fl~~p~~~~ad~~~r~F 81 (318)
T 2azp_A 4 QRIRIIDSHTGGEPTRLVIGGFPDLG--QGDMAERRRLLGERHDAWRAACILEPRGSDVLVGALLCAPVDPEACAGVIFF 81 (318)
T ss_dssp EEEEEEEEEETTEEEEEEEECSCCCC--SSCHHHHHHHHHHHCHHHHHHHHSTTTSCTTCEEEEEECCSSTTSSEEEEEE
T ss_pred cEEEEEEecCCCcceEEEeCCCCCCC--CCCHHHHHHHHHHhhchhhheeeeccCCCCCceEEEEECCCCCCCcEEEEEE
Confidence 368999999999999 666775 211 112 6788877765 5578888 6666544334689999999
Q ss_pred eCCCCcCCCcchhHHHHHHHHHHHccCCCCcEEEEEeCCeeEEEEEeeCceEEEEcC-CCccCCCCCCCccccCcccccc
Q 017920 142 NSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMG-EPILKASDVPTSLSANKDQSVV 220 (364)
Q Consensus 142 npDGsE~emCGNgtrc~a~~L~~~~g~~~~~~i~ieT~aG~l~v~v~~~g~v~V~mg-~p~~~~~~ip~~~~~~~~~~~l 220 (364)
|||| |++||||||||+|+||++ .|+.+++++++||.+|++++++.+++.+ +|. .|.+.+.. +.
T Consensus 82 tp~g-E~~~CGh~t~~~a~~l~~-~g~~~~~~~~~eT~aG~v~v~~~~~~~v--~m~~~P~~~~~~-~~----------- 145 (318)
T 2azp_A 82 NNSG-YLGMCGHGTIGLVASLAH-LGRIGPGVHRIETPVGEVEATLHEDGSV--SVRNVPAYRYRR-QV----------- 145 (318)
T ss_dssp CSSS-BCSCCHHHHHHHHHHHHH-TTSCCSEEEEEECTTCCEEEEECTTSCE--EEECSCBEEEEE-EE-----------
T ss_pred cCCC-ccCcCccHHHHHHHHHHH-cCCCCCCEEEEEeCcEEEEEEEecCCeE--EEEecCcccccC-Cc-----------
Confidence 9999 999999999999999999 8877667899999999999998644455 565 66653211 10
Q ss_pred ccceeeCC-eeEEEEEEEcCCCeEEEEeccCCccccc-chhhHhhhCccc-----ccCCCCCCceeEEEEEEeC-CCeEE
Q 017920 221 KSELDVDG-VKWNVTCVSMGNPHCVTFGTKEGQNLKV-DKLNLAEIGPKF-----EHHSVFPARTNTEFVEIIS-PSQLK 292 (364)
Q Consensus 221 ~~~l~i~~-~~~~~~~Vs~GnpH~Vv~v~~~~~~~~l-~~~~l~~lg~~l-----e~~~~fp~~~Nv~fv~v~~-~~~i~ 292 (364)
.+.+.+ ..+++.++++|+||+|+++++. .+.. +..++.++++.+ +.|+.||+++|+.++.+.+ +.+++
T Consensus 146 --~~~~~~lg~~~~~~v~~G~~~~vv~v~~~--~l~p~d~~~l~~l~~~i~~~~~~~~~~~p~~~nv~~v~v~~~~~~~~ 221 (318)
T 2azp_A 146 --SVEVPGIGRVSGDIAWGGNWFFLVAGHGQ--RLAGDNLDALTAYTVAVQQALDDQDIRGEDGGAIDHIELFADDPHAD 221 (318)
T ss_dssp --EEEETTTEEEEEEEEESSSEEEEEESCCC--CCSTTCHHHHHHHHHHHHHHHHHTTCBCTTSCBCCEEEEEEEETTEE
T ss_pred --eEecccCCceeEEEEeCCceEEEEECCCc--ccccccHHHHHHHHHHHHHHHhhcCCCcCCcCceEEEEEEeCCCCcc
Confidence 011111 1456778999999999999832 0111 344567777766 4588999999999998877 57799
Q ss_pred EEEe----eCCCCCCCCchhhHHHHHHHHHHhCCCCC--c-eEEEccCccEEEEEe----ecCCeE--EEEeceEEEEEE
Q 017920 293 MRVW----ERGAGATLACGTGACAVVVAAVLEGHAER--R-CTVDLPGGPLDIEWK----EEDNHV--YMTGPAEVVFYG 359 (364)
Q Consensus 293 ~R~f----ErGvgEt~ACGTGa~A~a~aa~~~g~~~~--~-~~V~~~GG~L~V~~~----~~~~~V--~i~G~A~~V~~G 359 (364)
+|+| |+|++| +|||||+||+++|++++|+.+. . ++++.+||.+.+++. ..++.| +|+|+|++|++|
T Consensus 222 ~R~fv~~p~~Gv~E-~acGSg~~A~a~~l~~~g~~~~~~~~~q~~~~G~~~~l~v~~~~~~~~~~V~~~i~G~A~~v~~G 300 (318)
T 2azp_A 222 SRNFVLCPGKAYDR-SPCGTGTSAKLACLAADGKLLPGQPWRQASVIGSQFEGRYEWLDGQPGGPIVPTIRGRAHVSAEA 300 (318)
T ss_dssp EEEEEECTTSCBCS-SCCHHHHHHHHHHHHHTTSSCTTCCEEEECTTSCEEEEEEEEGGGCTTSCEEEEEEECEEEEEEE
T ss_pred EEEEEEeCCCcccc-CCCHHHHHHHHHHHHHcCCCCCCCeEEEEEecCCCEEEEEEEEecccCCEEEEEEEEEEEEEEEE
Confidence 9999 899999 9999999999999998887653 4 578889998555544 134467 999999999999
Q ss_pred EEEeC
Q 017920 360 SVLLN 364 (364)
Q Consensus 360 ~i~i~ 364 (364)
++.++
T Consensus 301 ~l~~~ 305 (318)
T 2azp_A 301 TLLLA 305 (318)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99874
No 12
>1w61_A B-cell mitogen; racemase, racemase pyridoxal phosphate-independent, stereo inversion, acid/base catalysis, homodimer, alpha/beta domains; 2.1A {Trypanosoma cruzi} PDB: 1w62_A
Probab=100.00 E-value=1.2e-40 Score=332.96 Aligned_cols=268 Identities=17% Similarity=0.211 Sum_probs=199.6
Q ss_pred ceEEEeeeCCCCcEEEE-eCCC-CCCCCC----------CHHHHHHhhhccCC-cccceEEEEecCCCCCcEEEEEEeCC
Q 017920 78 FLHFVKYHGLGNDFILV-DNRN-STEPRI----------TPEQAAKLCDRNFG-IGADGVIFAMPGVNGTDYTMRIFNSD 144 (364)
Q Consensus 78 ~i~F~K~~g~GNdfvvi-d~~~-~~~~~~----------~~~~~~~lcdR~~G-IGaDgvlfV~p~~~~ad~~mRiFnpD 144 (364)
.+.|+|||++||||.|| |+.. .....+ .....+.||+|++| +|+||++++.|.++.+||+|||||||
T Consensus 45 ~~~~vd~h~~GNp~~VV~d~~~~l~~~t~~e~~~~~~~e~~~~r~~l~~EprG~~g~~g~fl~pp~~~~AD~~vRiFnpd 124 (414)
T 1w61_A 45 SFTCIDMHTEGEAARIVTSGLPHIPGSNMAEKKAYLQENMDYLRRGIMLEPRGHDDMFGAFLFDPIEEGADLGIVFMDTG 124 (414)
T ss_dssp EEEEEEEEETTEEEEEEEECCCCCCCSSHHHHHHHHHHHCHHHHHHHHSBTTSCTTCEEEEEECCCSTTCSEEEEEEESS
T ss_pred EEEEEEeCCCCCCEEEEeCCCCCCCCCCHHHHHHHHHhccHHHHHHhhcccCCCcceeEEEEECCCCCCCCEEEEEECCC
Confidence 58999999999999777 7621 110011 12256788999998 99999998866445799999999999
Q ss_pred CCcCCCcchhHHHHHHHHHHHccC--CC----CcEEEEEeCCeeEEEEEe-eCc---e---EEEEcCCCccCC-CCCCCc
Q 017920 145 GSEPEMCGNGVRCFARFIAELENL--NG----KQSFTVHTGAGLIVPEIQ-DDG---K---VKVDMGEPILKA-SDVPTS 210 (364)
Q Consensus 145 GsE~emCGNgtrc~a~~L~~~~g~--~~----~~~i~ieT~aG~l~v~v~-~~g---~---v~V~mg~p~~~~-~~ip~~ 210 (364)
| |++||||||||+++||++ .|+ .+ +..++|||.+|++++++. +++ . ++++| .|.|.. .+++.
T Consensus 125 G-e~~mCGHgTi~~a~~L~e-~Gl~~v~~~~~~~~i~lET~aGlV~v~v~~~dg~~~~v~~V~v~~-~P~f~~~~~i~v- 200 (414)
T 1w61_A 125 G-YLNMCGHNSIAAVTAAVE-TGIVSVPAKATNVPVVLDTPAGLVRGTAHLQSGTESEVSNASIIN-VPSFLYQQDVVV- 200 (414)
T ss_dssp C-CCSCCHHHHHHHHHHHHH-TTSSCCCTTCSEEEEEEEETTEEEEEEEEECTTCSSCEEEEEEEC-SCBEEEEEEEEE-
T ss_pred C-chhcCcCcHHHHHHHHHH-cCCcccCCCCCCceEEEEcCCeEEEEEEEeCCCccceEEEEEEee-eecccccccCce-
Confidence 9 899999999999999999 887 65 467999999999999986 444 3 66776 676632 22221
Q ss_pred cccCccccccccceeeCC--eeEEEEEEEcCCCeEEEEeccCCc-ccccchhhHhhhCcccc---------cCCCCCCce
Q 017920 211 LSANKDQSVVKSELDVDG--VKWNVTCVSMGNPHCVTFGTKEGQ-NLKVDKLNLAEIGPKFE---------HHSVFPART 278 (364)
Q Consensus 211 ~~~~~~~~~l~~~l~i~~--~~~~~~~Vs~GnpH~Vv~v~~~~~-~~~l~~~~l~~lg~~le---------~~~~fp~~~ 278 (364)
...+ ..+++.+++.|++++++.+.+-+. ...++..++.++|+.++ .|+.||+++
T Consensus 201 --------------~~~~~lg~~~~~i~~gG~~~~iV~~~s~g~~v~~~~~~~L~~~g~~i~~a~~~~~~~~Hp~fp~~~ 266 (414)
T 1w61_A 201 --------------VLPKPYGEVRVDIAFGGNFFAIVPAEQLGIDISVQNLSRLQEAGELLRTEINRSVKVQHPQLPHIN 266 (414)
T ss_dssp --------------ECCTTTCEEEEEEEESSSEEEEEEGGGGTCCSSSTTHHHHHHHHHHHHHHHHHHCCCCCSSCTTCC
T ss_pred --------------eccccCCceeeEEEECCeEEEEEEEEEcccccCcccHHHHHHHHHHHHHHHHhhccccCccCCCcc
Confidence 1111 145677888999999888874332 11234457888898887 899999999
Q ss_pred eEEEEEEeCCCe------EEEEEeeCCC-CCCCCchhhHHHHHHHHHHhCCCCC--ceEEE-ccCccEEEEEeec----C
Q 017920 279 NTEFVEIISPSQ------LKMRVWERGA-GATLACGTGACAVVVAAVLEGHAER--RCTVD-LPGGPLDIEWKEE----D 344 (364)
Q Consensus 279 Nv~fv~v~~~~~------i~~R~fErGv-gEt~ACGTGa~A~a~aa~~~g~~~~--~~~V~-~~GG~L~V~~~~~----~ 344 (364)
|++|+++.++.. ..+|+||||+ +|| +||||+||++++++++|+... .+.++ ..|+....++... +
T Consensus 267 nv~~v~v~~~~~~~~~~~R~~~v~erG~ides-pcGTGa~A~aa~l~~~G~l~~g~~~~~esiiGs~f~gri~~~~~~~~ 345 (414)
T 1w61_A 267 TVDCVEIYGPPTNPEANYKNVVIFGNRQADRS-PCGTGTSAKMATLYAKGQLRIGETFVYESILGSLFQGRVLGEERIPG 345 (414)
T ss_dssp SEEEEEEEECCSSTTCSEEEEEEETTTEECSS-CCHHHHHHHHHHHHHTTCCCTTCCEEEEETTSCEEEEEEEEEEEEET
T ss_pred cEEEEEEEeCCCCCceeEEEEEEeCCCccCCC-CChhhHHHHHHHHHHcCCCCCCCeEEEEEccCcEEEEEEEEEeeccC
Confidence 999999876554 7788999998 778 699999999999999998763 33333 3455443333210 1
Q ss_pred --------------C-eEEEEeceEEEEEEEEEeC
Q 017920 345 --------------N-HVYMTGPAEVVFYGSVLLN 364 (364)
Q Consensus 345 --------------~-~V~i~G~A~~V~~G~i~i~ 364 (364)
. .++|+|.|.++.+|++.+|
T Consensus 346 ~~~~i~~~~~~~~~~v~~~I~G~A~i~g~~~l~ld 380 (414)
T 1w61_A 346 VKVPVTKDAEEGMLVVTAEITGKAFIMGFNTMLFD 380 (414)
T ss_dssp CCCTTCCTTSSEEEEEEEEEEECEEEEEEEEEEEC
T ss_pred cccceeeccccCCceEEEEEEEEEEEEEEEEEEEC
Confidence 1 4889999999999999875
No 13
>4dun_A Putative phenazine biosynthesis PHZC/PHZF protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: BTB; 1.76A {Clostridium difficile}
Probab=100.00 E-value=3.4e-40 Score=311.76 Aligned_cols=246 Identities=15% Similarity=0.176 Sum_probs=184.0
Q ss_pred EEeeeCCCCcEEEE-eCCCCCCCCCCHHHHHHhhhccCCcccceEEEEecCCCCCcEEEEEEeCCCCcCCCcchhHHHHH
Q 017920 81 FVKYHGLGNDFILV-DNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFA 159 (364)
Q Consensus 81 F~K~~g~GNdfvvi-d~~~~~~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~~~~ad~~mRiFnpDGsE~emCGNgtrc~a 159 (364)
|+|+++.||++.|+ +.. .+++++||+|+++ .|.++++||.++ ++||+||||||| +|++||||||||++
T Consensus 12 Ft~~~~~GNp~aVv~~~~-----~l~~~~mq~iA~e---~~~sET~Fv~~~--~~d~~lR~Ftp~-~Ev~~CGHatl~~a 80 (263)
T 4dun_A 12 FATKLFKGNPAGVCVLDR-----RIPLELMQKIAEE---NNLPETAFVVKG--KGNYELRWFTPK-AEIDLCGHATLAAA 80 (263)
T ss_dssp TCSSTTCSEEEEEEEESS-----CCCHHHHHHHHHH---HCSSEEEEEEEE--TTEEEEEEECSS-CEESCCHHHHHHHH
T ss_pred eeCCCCCCCCEEEEECCC-----CCCHHHHHHHHHH---hCCCeEEEEEeC--CCcEEEEEEeCC-cEeccCCcHHHHHH
Confidence 99999999999664 543 4789999999997 588999999885 579999999999 79999999999999
Q ss_pred HHHHHHccCCCCcEEEEEeCCeeEEEEEeeCceEEEEcCCCccCCCCCCCccccCccccccccceeeCCeeEEEEEEEcC
Q 017920 160 RFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMG 239 (364)
Q Consensus 160 ~~L~~~~g~~~~~~i~ieT~aG~l~v~v~~~g~v~V~mg~p~~~~~~ip~~~~~~~~~~~l~~~l~i~~~~~~~~~Vs~G 239 (364)
++|++ ++...++++.++|.+|.+++++.++ .++++|+.|.+.+...+ +.+.+.|.+... .+.+|
T Consensus 81 ~~l~~-~~~~~~~~~~~et~aG~l~v~~~~~-~i~m~~p~~~~~~~~~~---------~~l~~aLg~~~~-----~v~~g 144 (263)
T 4dun_A 81 YVISN-FIDVNVKKIDFFTQSGKLEVTRNGN-LYEMIFPEIMPIEIELS---------PQQANLIGCVPS-----DVYSS 144 (263)
T ss_dssp HHHHH-HTSTTCSEEEEEETTEEEEEEEETT-EEEEEEECCCCEECCCC---------HHHHHHSSSCCS-----EEEES
T ss_pred HHHHH-hcCCCCCeEEEEeCCeEEEEEEeCC-EEEEeCCCCCccCCCCH---------HHHHHHcCCCHH-----HeEcC
Confidence 99999 7766667899999999999998654 68999988876543211 124445554322 23458
Q ss_pred CCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEeCCCeEEEEEeeCCC-CCCCCchhhHHHHHHHHH
Q 017920 240 NPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGA-GATLACGTGACAVVVAAV 318 (364)
Q Consensus 240 npH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~~~~~i~~R~fErGv-gEt~ACGTGa~A~a~aa~ 318 (364)
. |++++++++ ..+.++.|+++....+++...+......++.++++|+|+++. +|||+|||++|+++.|+.
T Consensus 145 ~-~~~v~l~~~--------~~l~~l~pd~~~l~~l~~~~gv~v~~~~~~~d~~~R~FaP~~G~EDPvTGSa~~aLa~yl~ 215 (263)
T 4dun_A 145 R-DLILLLNSE--------QEVINYKPNYAQLRKLTDWLGIIITAQGSNTDFVSRYFCPELDSEDPVTGSSHCNLIPYWS 215 (263)
T ss_dssp S-SEEEECSCH--------HHHHHCCCCHHHHTTCTTCSCEEEEEECSSSSEEEEEEETTTTEEESCCSTTHHHHHHHHH
T ss_pred C-cEEEEECCH--------HHHHhCCCCHHHHHHhcCCceEEEEecCCCceEEEEeecCCCCCCCcccchhhHHHHHHHH
Confidence 4 899999832 244566666655444433223332223345679999999965 699999999999997664
Q ss_pred -HhCCCCC-ceEEEccCccEEEEEeecCCe-EEEEeceEEEEEEEEEeC
Q 017920 319 -LEGHAER-RCTVDLPGGPLDIEWKEEDNH-VYMTGPAEVVFYGSVLLN 364 (364)
Q Consensus 319 -~~g~~~~-~~~V~~~GG~L~V~~~~~~~~-V~i~G~A~~V~~G~i~i~ 364 (364)
++|+... ..|...|||.|.|++++ ++ |+|+|+|+++++|++.+.
T Consensus 216 ~~l~~~~~~~~Q~~~R~G~l~v~~~~--~~~V~vgG~av~v~~G~i~~~ 262 (263)
T 4dun_A 216 EKLGKHKMVAAQLSNRGGIIQCEVLK--DNTVKISGEAVLFMQGTIKID 262 (263)
T ss_dssp HHHTCSEEEEEECSSSCEEEEEEECS--SSEEEEEECEEEEEEEEECC-
T ss_pred HhcCCCcEEEEEEECCCEEEEEEEEC--CcEEEEEeEEEEEEEEEEEcc
Confidence 4565321 23444599999999963 46 999999999999999763
No 14
>1tm0_A Proline racemase; structural genomics, alpha-beta protein THAT resembles doubl barrel, in EACH of which AN alpha helix is sandwiched, PSI; 2.80A {Brucella melitensis} SCOP: d.21.1.3
Probab=100.00 E-value=1.2e-34 Score=284.30 Aligned_cols=268 Identities=19% Similarity=0.266 Sum_probs=179.6
Q ss_pred ceEEEeeeCCCCcE-EEEeCC-CCCCCCC---------CHHHHHHhhhccCC-cccceEEEEecCCCCCcEEEEEEeCCC
Q 017920 78 FLHFVKYHGLGNDF-ILVDNR-NSTEPRI---------TPEQAAKLCDRNFG-IGADGVIFAMPGVNGTDYTMRIFNSDG 145 (364)
Q Consensus 78 ~i~F~K~~g~GNdf-vvid~~-~~~~~~~---------~~~~~~~lcdR~~G-IGaDgvlfV~p~~~~ad~~mRiFnpDG 145 (364)
.+.-.-.|..||+. ||++.. ..+...+ .+++.++||+|++| +|.||++++.|.++++||+||||||||
T Consensus 6 ~~~~vd~~t~Gnp~~vv~~~~~~l~~~~m~~~~~~~~~~~~~r~~l~~eprG~~g~~g~fv~~p~~~~aD~~~rifn~dg 85 (350)
T 1tm0_A 6 VIHIVGCHAEGEVGDVIVGGVAPPPGETVWEQSRFIANDETLRNFVLNKPRGGVFRHVNLLVPPKDPRAQMGFIIMEPAD 85 (350)
T ss_dssp CEEEEEEEETTEECEEEEESCCCCSSSSHHHHHHHHHHHCHHHHHHHSTTTSCSSCCEEEEECCCSSSCSEEEECCCSSC
T ss_pred EEEEEEeCCCCcceEEEeCCcCCCCchhHHHHHHHHHhhhHHHHHhhcCCCCCCCccEEEEeCCCCCCCCEEEEEEECCC
Confidence 46666678899999 667764 2211111 01234578889998 999998877554457999999999999
Q ss_pred CcCCCcchhHHHHHHHHHHHccCCC----CcEEEEEeCCeeEEEEEe-eCceE-EEEc-CCCccCC-CCCCCccccCccc
Q 017920 146 SEPEMCGNGVRCFARFIAELENLNG----KQSFTVHTGAGLIVPEIQ-DDGKV-KVDM-GEPILKA-SDVPTSLSANKDQ 217 (364)
Q Consensus 146 sE~emCGNgtrc~a~~L~~~~g~~~----~~~i~ieT~aG~l~v~v~-~~g~v-~V~m-g~p~~~~-~~ip~~~~~~~~~ 217 (364)
|.+||||||||+++||++ .|+.+ +++++|||.+|++++++. .++.+ +|.| ..|.|.. .+++
T Consensus 86 -e~~mCGhgt~~~a~~l~e-~Glv~~~~~~~~~~ieT~aG~v~v~v~~~~g~v~~v~~~~~P~f~~~~~i~--------- 154 (350)
T 1tm0_A 86 -TPPMSGSNSICVSTVLLD-SGIIAMQEPVTHMVLEAPGGIIEVEAECRNGKAERISVRNVPSFADRLDAP--------- 154 (350)
T ss_dssp -CCSCCHHHHHHHHHHHHH-HTSSCCCSSEEEEEEECSSCEEEEEEEECSSSEEEEEEECCCBEECCCSEE---------
T ss_pred -ccccccchHHHHHHHHHH-cCCCCCCCCCcEEEEECCCeEEEEEEEeCCCcEEEEEEeccccccccccCc---------
Confidence 789999999999999999 88775 467999999999999986 44533 4444 2666632 1222
Q ss_pred cccccceeeCC-eeEEEEEEEcCCCeEEEEeccCCccc-ccchhhHhhhCccccc---------CCCCCCceeEEEEEEe
Q 017920 218 SVVKSELDVDG-VKWNVTCVSMGNPHCVTFGTKEGQNL-KVDKLNLAEIGPKFEH---------HSVFPARTNTEFVEII 286 (364)
Q Consensus 218 ~~l~~~l~i~~-~~~~~~~Vs~GnpH~Vv~v~~~~~~~-~l~~~~l~~lg~~le~---------~~~fp~~~Nv~fv~v~ 286 (364)
+...+ ..+++.+++.|+||+++.+.+..... ..+..++.++++.++. |+. |+++|++|+++.
T Consensus 155 ------~~~~~lg~~~~~i~~~G~~~~iv~~~~~g~~v~~~~~~~l~~~g~~i~~~~~~~~~~~hp~-p~~~nv~~v~~~ 227 (350)
T 1tm0_A 155 ------LDVTGLGTIMVDTAYGGDSFVIVDAAQIGMKIEPGQARELAEIGVKITKAANEQLGFRHPE-RDWRHISFCQIT 227 (350)
T ss_dssp ------EECSSSSEEEEEEEESSSEEEEEEGGGTC---CHHHHHHHHHHHHHHHCC------CCBTT-BSCCSCCEEEEE
T ss_pred ------eecCCcCcEEEEEEECCEEEEEEEeecccCccCchhHHHHHHHHHHHHHHHHhhcccCCCC-cCCcceeEEEEE
Confidence 11111 13567789999999999887432111 1123456677777654 888 999999999988
Q ss_pred CCCe--------EEEEEeeCCC-CCCCCchhhHHHHHHHHHHhCCCCC--ceEEEc-cC----ccEEEEEeecCC---eE
Q 017920 287 SPSQ--------LKMRVWERGA-GATLACGTGACAVVVAAVLEGHAER--RCTVDL-PG----GPLDIEWKEEDN---HV 347 (364)
Q Consensus 287 ~~~~--------i~~R~fErGv-gEt~ACGTGa~A~a~aa~~~g~~~~--~~~V~~-~G----G~L~V~~~~~~~---~V 347 (364)
++.+ ..+|+||||+ +||+ ||||+||++++++++|+.+. .+.+++ -| |.+.+.....+. .+
T Consensus 228 ~~~~~~~~~~~~r~~rv~~~G~~~etp-cGTga~A~aa~l~~~G~l~~g~~~~~e~~iG~~f~g~i~~~~~~~~~~~v~~ 306 (350)
T 1tm0_A 228 EPVTREGDVLTGVNTVAIRPAKFDRSP-TGTGCSARMAVLHAKGQMKAGERFIGKSVLGTEFHCRLDKVLELGGKPAISP 306 (350)
T ss_dssp CCCEESSSEEEECEEC----------C-CHHHHHHHHHHHHHTTSCCTTCEEEECCC--CCEEEEEEEEEEETTEEEEEE
T ss_pred ecCCCcccccceEEEEEeCCCCcCCCC-CHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCEEEEEEEEEEECCeeEEEE
Confidence 7653 2567799998 7885 99999999999999998763 333332 22 334332222221 48
Q ss_pred EEEeceEEEEEEEEEeC
Q 017920 348 YMTGPAEVVFYGSVLLN 364 (364)
Q Consensus 348 ~i~G~A~~V~~G~i~i~ 364 (364)
+|+|.|.++.+|++.+|
T Consensus 307 ~I~G~A~~~~~~~~~~d 323 (350)
T 1tm0_A 307 IISGRAWVTGTSQLMLD 323 (350)
T ss_dssp EEEECEEEEEEEEECCC
T ss_pred EEeEEEEEEEEEEEEEC
Confidence 89999999999999875
No 15
>2pw0_A PRPF methylaconitate isomerase; propionate catabolism, diaminopimelate epimerase like, aconi binding, unknown function; HET: TRC; 1.57A {Shewanella oneidensis} PDB: 2pvz_A 2h9f_A
Probab=98.84 E-value=7.3e-07 Score=87.65 Aligned_cols=279 Identities=18% Similarity=0.231 Sum_probs=159.0
Q ss_pred CCcceEEEeeeCCCCcEEEEeCCCCCCCC-----CCHHHHHHhh---h---ccC-Cccc-----ceEEEEecC-CCCCcE
Q 017920 75 ESGFLHFVKYHGLGNDFILVDNRNSTEPR-----ITPEQAAKLC---D---RNF-GIGA-----DGVIFAMPG-VNGTDY 136 (364)
Q Consensus 75 ~~~~i~F~K~~g~GNdfvvid~~~~~~~~-----~~~~~~~~lc---d---R~~-GIGa-----DgvlfV~p~-~~~ad~ 136 (364)
.+++|+.+=|.|-=-.=+++...+.+... ..++...++. | |+. |+|. +=+.+|.|+ .+++|+
T Consensus 8 ~~~~ip~~~mRGGTSkG~ff~~~dLP~~~~~~~~~rd~~ll~~mGSpdp~~rQiDG~GG~~s~tSKvaIv~ps~~pdaDv 87 (397)
T 2pw0_A 8 PQIKVAATYMRGGTSKGVFFRLQDLPEAAQVPGPARDALLLRVIGSPDPYAKQIDGMGGATSSTSKTVILSHSSKANHDV 87 (397)
T ss_dssp CCEEEEEEEEEETTEEEEEEEGGGSCGGGSSSSHHHHHHHHHHHTCSCTTSSCTTSSCCSSTTTSEEEEEEECCSTTCSE
T ss_pred ccccccEEEEeccccceeEEcHhHCCCccccchhhHHHHHHHHhCCCCcccccccccCCCCCCcceEEEEeCCCCCCCCe
Confidence 34568888888844444777776653211 0111122222 2 221 4442 235667666 468898
Q ss_pred EEEEEeCC------CCcCCCcchhHHHHHHHHHHHccCCC----C----cEEEE-EeCCe-eEEEEEee-CceEE-----
Q 017920 137 TMRIFNSD------GSEPEMCGNGVRCFARFIAELENLNG----K----QSFTV-HTGAG-LIVPEIQD-DGKVK----- 194 (364)
Q Consensus 137 ~mRiFnpD------GsE~emCGNgtrc~a~~L~~~~g~~~----~----~~i~i-eT~aG-~l~v~v~~-~g~v~----- 194 (364)
.+.|.-.. + =..||||.+.|++-|+.+ +|++. . ..++| +|+.| ++.+++.- +|.+.
T Consensus 88 dylF~Qv~i~~~~Vd-~s~nCGN~s~aVgpfAIe-~GLV~~~~~~~~~~t~VrI~~tntGk~I~a~v~~~~G~v~~~Gd~ 165 (397)
T 2pw0_A 88 DYLFGQVSIDKPFVD-WSGNCGNLTAAVGAFAIS-NGLIDAARIPRNGVCTVRIWQANIGKTIIAHVPITDGAVQETGDF 165 (397)
T ss_dssp EEEEEEECSSSSCEE-CSSCCTTTHHHHHHHHHH-TTCSCGGGCCSSEEEEEEEEETTTTEEEEEEEEEETTEECCCCSB
T ss_pred EEEEEEcccccCcCc-CCCCCcchHHHHHHHHHH-CCCCCCcccCCCCcEEEEEEecCCCCEEEEEEEecCCEEeecCCE
Confidence 88887664 3 468999999999999999 99986 2 35888 99999 88777653 44321
Q ss_pred -------------EEcCCCc-----cCCCCCCCccccCccccccccceeeCC-eeEEEEEEEcCCCeEEEEeccCCcc--
Q 017920 195 -------------VDMGEPI-----LKASDVPTSLSANKDQSVVKSELDVDG-VKWNVTCVSMGNPHCVTFGTKEGQN-- 253 (364)
Q Consensus 195 -------------V~mg~p~-----~~~~~ip~~~~~~~~~~~l~~~l~i~~-~~~~~~~Vs~GnpH~Vv~v~~~~~~-- 253 (364)
+++-.|. -...-.|. ......+.+.+ ..+++.+++.|||.++|-.++..-.
T Consensus 166 ~idGVpg~aa~i~l~Fldp~G~~~~~tG~llPT--------G~~~D~i~vpg~g~v~vtlid~G~p~v~V~A~dlG~~g~ 237 (397)
T 2pw0_A 166 ELDGVTFPAAEVQIEFMNPAADDDGEGGCMFPT--------GNLVDVLEVPGIGRFNATMINAGIPTIFINAEDLGYTGT 237 (397)
T ss_dssp CCTTCSSCBCCEEEEEESCBC--------CCTT--------SCSSEEEEETTTEEEEEEEEEBSSEEEEEEGGGGTCCSC
T ss_pred EEeCCCCCCCceeeeeccccccccCCCcccCCC--------CCcceEEEcCCCCCEEEEEEeCCceEEEEEHHHcCCCCc
Confidence 1111110 00000010 00112344433 3577889999999888865532100
Q ss_pred ---cccch-hhH----hhh----Cccccc--CCCC-CCc---eeEEEEEEeC-------------CCeEEEEEeeCCCCC
Q 017920 254 ---LKVDK-LNL----AEI----GPKFEH--HSVF-PAR---TNTEFVEIIS-------------PSQLKMRVWERGAGA 302 (364)
Q Consensus 254 ---~~l~~-~~l----~~l----g~~le~--~~~f-p~~---~Nv~fv~v~~-------------~~~i~~R~fErGvgE 302 (364)
.+++. .++ ++| +..+.. |+.- |.. -.+.|+.... ...+.+|+|-.|.-.
T Consensus 238 E~p~~i~~d~~ll~~~e~IR~~aa~~mgl~~~~~~a~~~~~vPkv~~vs~p~~~~~~~g~~~~~~~~~i~vr~~s~g~~H 317 (397)
T 2pw0_A 238 ELQDDINSDNAALAKFETIRAHGALRMGLIKHIDEAASRQHTPKIAFVAPPKSYASSSGKTVAAEDVDLLVRALSMGKLH 317 (397)
T ss_dssp CCHHHHTTCHHHHHHHHHHHHHHHHHTTSCSSGGGGGGCCSSSEEEEEESCCCEECTTSCEECGGGCSEEEEEEETTEEC
T ss_pred cCHHHhccCHHHHHHHHHHHHHHHhhCCccCChhHccccCCCCEEEEEeCCCccccccccccccccCcEEEEEeeCCCcc
Confidence 01100 011 111 111111 2110 111 1355554221 125899999998777
Q ss_pred CCCchhhHHHHHHHHHHhC--------CCC-CceEEEccCccEEEEEeec--CC-----eEEEEeceEEEEEEEEEe
Q 017920 303 TLACGTGACAVVVAAVLEG--------HAE-RRCTVDLPGGPLDIEWKEE--DN-----HVYMTGPAEVVFYGSVLL 363 (364)
Q Consensus 303 t~ACGTGa~A~a~aa~~~g--------~~~-~~~~V~~~GG~L~V~~~~~--~~-----~V~i~G~A~~V~~G~i~i 363 (364)
---||||++|.|.++..-| ..+ ..+++..|.|.|.|....+ ++ ...|.=.|..+++|++++
T Consensus 318 rS~~gTGava~a~Aa~i~GTv~~~~~~~~~~~~v~i~HPsG~~~v~~~~~~~~~~~~~~~a~~~RTAR~lm~G~v~v 394 (397)
T 2pw0_A 318 HAMMGTAAVAIGTAAAIPGTLVNLAAGGGEKEAVRFGHPSGTLRVGAQAVQENGEWTVIKAIMSRSARVLMEGFVRV 394 (397)
T ss_dssp SSCCHHHHHHHHHHHTSTTSHHHHHTTSSCCSEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEECEEEEEEEEEEE
T ss_pred cCcCcHHHHHHHHHHhcCCcHHHHHhccCCCCeEEEeCCCeEEEEEEEEecCCCcceEEEEEEEeehhheeeeEEeC
Confidence 7779999999987765432 222 3578889999998876532 33 345678899999999986
No 16
>3g7k_A 3-methylitaconate isomerase; DAPF family fold, closed conformation, open conformation; 2.70A {Eubacterium barkeri}
Probab=98.44 E-value=0.00033 Score=68.41 Aligned_cols=276 Identities=17% Similarity=0.208 Sum_probs=155.7
Q ss_pred CcceEEEeeeCCCCcEEEEeCCCCCCCC-CCHHHHHHhh-----hccCCccc-----ceEEEEecC-CCCCcEEEEEEeC
Q 017920 76 SGFLHFVKYHGLGNDFILVDNRNSTEPR-ITPEQAAKLC-----DRNFGIGA-----DGVIFAMPG-VNGTDYTMRIFNS 143 (364)
Q Consensus 76 ~~~i~F~K~~g~GNdfvvid~~~~~~~~-~~~~~~~~lc-----dR~~GIGa-----DgvlfV~p~-~~~ad~~mRiFnp 143 (364)
+.+|+.+=|.|-=-.=+++...+.+... ..++...++. +..-|+|. +=+.+|.|+ .+++|+.+.|..-
T Consensus 4 ~~~iP~~~mRGGTSKG~ff~~~DLP~d~~~rd~iLl~vmGSPdprQiDGmGGa~s~TSKvaIv~ps~~p~~DvdylF~QV 83 (391)
T 3g7k_A 4 QMRIPCVIMRAGTSKGIFLKGNDLPADQELRDKVILRIFGSPDVRQIDGLAGADPLTSKLAIIGPSTHPDADVDYTFAQV 83 (391)
T ss_dssp EEEEEEEEEEETTEEEEEEEGGGSCSSHHHHHHHHHHHHTCSCTTCTTSSSCSSGGGSEEEEEEECCSTTCSEEEEEEEE
T ss_pred cccccEEEEeccCccEeeEcHHHCCCCHHHHHHHHHHHcCCCCccccCcccCCccccceEEEEECCCCCCCCEEEEEEEe
Confidence 3468888888844444777776653210 0111222332 12236664 335667776 3578888888755
Q ss_pred C-----CCcCCCcchhHHHHHHHHHHHccCCCC----cEEEEE-eCCe-eEEEEEe-eCceE------------------
Q 017920 144 D-----GSEPEMCGNGVRCFARFIAELENLNGK----QSFTVH-TGAG-LIVPEIQ-DDGKV------------------ 193 (364)
Q Consensus 144 D-----GsE~emCGNgtrc~a~~L~~~~g~~~~----~~i~ie-T~aG-~l~v~v~-~~g~v------------------ 193 (364)
. -.-..+|||.+.+++-|+.+ +|++.. ..++|+ |+.| ++.+++. .+|.+
T Consensus 84 ~i~~~~Vd~s~nCGN~~aaVgpfAie-~GLV~~~~~~t~VRI~n~Ntgk~i~a~v~~~~G~v~~~Gd~~idGVpgtaa~I 162 (391)
T 3g7k_A 84 SITDAVVDYNGNCGNISAGVGPFAID-ESFVKAVEPMTRVCIHNTNTGKLLYAEVEVEDGKAKVSGDCKIDGVPGTNAPE 162 (391)
T ss_dssp CSSSSCEECSSCCHHHHHHHHHHHHH-TTSSCCCSSEEEEEEEETTTCCEEEEEEEEETTEECCCCSBCCTTSSSCBCCE
T ss_pred cccCCccccCCCccchHHHHHHHHHH-CCCccCCCCcEEEEEEecCCCCEEEEEEEecCCEEeecCCEEECCccCCCCce
Confidence 2 01357999999999999999 998852 368888 6887 6666654 23332
Q ss_pred EEEcCCCcc--CCCCCCCccccCccccccccceeeCCeeEEEEEEEcCCCeEEEEeccCCcc--c---ccch--h---hH
Q 017920 194 KVDMGEPIL--KASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQN--L---KVDK--L---NL 261 (364)
Q Consensus 194 ~V~mg~p~~--~~~~ip~~~~~~~~~~~l~~~l~i~~~~~~~~~Vs~GnpH~Vv~v~~~~~~--~---~l~~--~---~l 261 (364)
.+++-.|.= ...-.|.. . ....+.+.+..+++.+++.|||.+++-.++..-. + +++. . -+
T Consensus 163 ~l~F~~paGs~tG~LlPTG------~--~~D~i~vp~g~v~vt~id~g~P~v~v~A~dlG~~G~E~p~~l~ad~~ll~rl 234 (391)
T 3g7k_A 163 LMDFSDTAGAATGKVLPTG------N--VVDVLSTSKGDIDVSIVDVANPCIFVHAKDVNMTGTETPDVINGNADLLAYL 234 (391)
T ss_dssp EEECGGGBTTTTSSSSTTS------C--SCEEECCTTCCEEEEEEEBSSEEEEEESGGGTCCSCCCHHHHHTCHHHHHHH
T ss_pred EEEeeCcCCCcCcccCCCC------C--ceeEEEeCCCcEEEEEEecCccEEEEEHHHcCCCCccCHHHHhcCHHHHHHH
Confidence 222211100 00001110 0 0112333333478899999999887765531100 0 0110 0 01
Q ss_pred hhh----------Ccccc---c-CCCCCCceeEEEEEEeC--------------CCeEEEEEeeCCCCCCCCchhhHHHH
Q 017920 262 AEI----------GPKFE---H-HSVFPARTNTEFVEIIS--------------PSQLKMRVWERGAGATLACGTGACAV 313 (364)
Q Consensus 262 ~~l----------g~~le---~-~~~fp~~~Nv~fv~v~~--------------~~~i~~R~fErGvgEt~ACGTGa~A~ 313 (364)
+.+ ++..+ . .+..| .+.|+.... +-+|.+|.|-.|.-=..--+||+.|+
T Consensus 235 E~IR~~aa~~MGL~~~~~~a~~~~~~~P---Ki~lVspp~~~~~~~~G~~i~~~~~Di~vR~~sm~~~H~a~~~Tgav~l 311 (391)
T 3g7k_A 235 EEIRAKCCVKIGMAATEKEASEKSPAFP---MIAFVTKPEDYVDFSTGNTISGDDVDLVSRLMFMQVLHKTYAGTATACT 311 (391)
T ss_dssp HHHHHHHHHHTTSCSSHHHHHHHCSSSS---EEEEEESCCCEECTTTCCEECTTSCSEEEEEECSSSBCSSCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCChhHhccccCCCC---eEEEEeCCCccccccCCccccccccCEEEEEecCCCcchhhhhHHHHHH
Confidence 222 11111 0 12234 244544211 11599999988776666678999998
Q ss_pred HHHHHHhCC--------CC--CceEEEccCccEEEEEeecCC---eEEEEeceEEEEEEEEEe
Q 017920 314 VVAAVLEGH--------AE--RRCTVDLPGGPLDIEWKEEDN---HVYMTGPAEVVFYGSVLL 363 (364)
Q Consensus 314 a~aa~~~g~--------~~--~~~~V~~~GG~L~V~~~~~~~---~V~i~G~A~~V~~G~i~i 363 (364)
|.++..-|- .. ..+++..|.|.|.|....+++ .+.|.=.|..+++|++++
T Consensus 312 a~Aa~ipGTv~~~~~~~~~~~~~v~igHPsG~l~v~~~~~~g~v~~a~~~RTAR~Lm~G~V~v 374 (391)
T 3g7k_A 312 GSAARIPGTIVNQVLRDTGDEDTVRIGHPAGVIPVVSIVKDGKVEKAALIRTARRIMEGYVYV 374 (391)
T ss_dssp HHHHHSTTSHHHHHCCCCTTCCEEEEEETTEEEEEEEEEETTEEEEEEEEECEEEEEEEEEEE
T ss_pred HHHHhCCCcHHHHhhccCCCCceEEEecCCEEEEEEEEcCCCcEEEEEEEecchhcceeEEEe
Confidence 877655432 11 257888899999887632233 466888999999999875
No 17
>4dun_A Putative phenazine biosynthesis PHZC/PHZF protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: BTB; 1.76A {Clostridium difficile}
Probab=96.65 E-value=0.011 Score=55.13 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=70.6
Q ss_pred cCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEeCCCeEEEEEeeCCCCCCCCchhhHHHHHHHH
Q 017920 238 MGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317 (364)
Q Consensus 238 ~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~~~~~i~~R~fErGvgEt~ACGTGa~A~a~aa 317 (364)
.|||-.|++..+ .++...+.+++..+. ++ -.-|+... ...+++|+|-+. .|=+-||-|+-|++.++
T Consensus 18 ~GNp~aVv~~~~-----~l~~~~mq~iA~e~~----~s---ET~Fv~~~-~~d~~lR~Ftp~-~Ev~~CGHatl~~a~~l 83 (263)
T 4dun_A 18 KGNPAGVCVLDR-----RIPLELMQKIAEENN----LP---ETAFVVKG-KGNYELRWFTPK-AEIDLCGHATLAAAYVI 83 (263)
T ss_dssp CSEEEEEEEESS-----CCCHHHHHHHHHHHC----SS---EEEEEEEE-TTEEEEEEECSS-CEESCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCC-----CCCHHHHHHHHHHhC----CC---eEEEEEeC-CCcEEEEEEeCC-cEeccCCcHHHHHHHHH
Confidence 599988887652 566666677766542 22 24455543 467999999998 89999999999988877
Q ss_pred HHhCCCC-CceEEEccCccEEEEEeecCCeEEEE
Q 017920 318 VLEGHAE-RRCTVDLPGGPLDIEWKEEDNHVYMT 350 (364)
Q Consensus 318 ~~~g~~~-~~~~V~~~GG~L~V~~~~~~~~V~i~ 350 (364)
...|... ..+.++.+.|.|.+++.+ +.+.|.
T Consensus 84 ~~~~~~~~~~~~~et~aG~l~v~~~~--~~i~m~ 115 (263)
T 4dun_A 84 SNFIDVNVKKIDFFTQSGKLEVTRNG--NLYEMI 115 (263)
T ss_dssp HHHTSTTCSEEEEEETTEEEEEEEET--TEEEEE
T ss_pred HHhcCCCCCeEEEEeCCeEEEEEEeC--CEEEEe
Confidence 7777654 468889999999998753 456654
No 18
>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.012 Score=55.50 Aligned_cols=99 Identities=23% Similarity=0.368 Sum_probs=65.7
Q ss_pred CCCcEEEEeCCCCC---CCCCCHHHHHHhhhccCCcccceEEEEecCC---CCCcEEEEEEeC--CCCcCCCcchhHHHH
Q 017920 87 LGNDFILVDNRNST---EPRITPEQAAKLCDRNFGIGADGVIFAMPGV---NGTDYTMRIFNS--DGSEPEMCGNGVRCF 158 (364)
Q Consensus 87 ~GNdfvvid~~~~~---~~~~~~~~~~~lcdR~~GIGaDgvlfV~p~~---~~ad~~mRiFnp--DGsE~emCGNgtrc~ 158 (364)
.||+++|+.-.+.. .....-+...+++++ .+..|+.+..+.. +..++++|+|.| ---|=+-||-|.-|+
T Consensus 158 ~G~ph~vv~v~~~~~l~~l~p~~~~~~~~~~~---~~~~gv~v~~~~~~~~~~~~~~~R~f~p~~Gv~EdpatGSaa~al 234 (300)
T 1ym5_A 158 TGPEWIVALVEDAETCFNANPNFAMLAHQTKQ---NDHVGIILAGPKKEAAIKNSYEMRAFAPVINVYEDPVCGSGSVAL 234 (300)
T ss_dssp SSSEEEEEECSCHHHHHHCCCCHHHHHHHHHH---HTCCEEEEEEECTTCSSTTEEEEEEEEGGGTEEEESSCHHHHHHH
T ss_pred cCCCEEEEEECCHHHHHhCCCCHHHHHHHHhh---cCCcEEEEEEecCCCCCCceEEEEecccccCCCCCCcchHHHHHH
Confidence 69999776332210 011223455667765 3445666533321 356899999998 323779999999999
Q ss_pred HHHHHHHccCCCC-cEEEEE-----eCCeeEEEEEee
Q 017920 159 ARFIAELENLNGK-QSFTVH-----TGAGLIVPEIQD 189 (364)
Q Consensus 159 a~~L~~~~g~~~~-~~i~ie-----T~aG~l~v~v~~ 189 (364)
|.|+.+ .+.... ..++++ ...|.|.+++..
T Consensus 235 a~~~~~-~~~~~~~~~~~v~QG~~~~rgG~L~v~~~~ 270 (300)
T 1ym5_A 235 ARYLQE-VYKFEKTTDITISEGGRLKRNGLMLASIKK 270 (300)
T ss_dssp HHHHHH-HHCCSSCEEEEEEECGGGTCCEEEEEEEEE
T ss_pred HHHHHH-hCCCCCceEEEEEcccccCCCeEEEEEEEc
Confidence 999998 665433 368999 899999998853
No 19
>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis}
Probab=96.54 E-value=0.0092 Score=56.21 Aligned_cols=91 Identities=23% Similarity=0.379 Sum_probs=65.1
Q ss_pred cCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEeCCCeEEEEEeeCCCCCCCCchhhHHHHHHHH
Q 017920 238 MGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317 (364)
Q Consensus 238 ~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~~~~~i~~R~fErGvgEt~ACGTGa~A~a~aa 317 (364)
.|||-.|++.. + .++...+.+|+..+... -+-|+...+...+++|+|-+| .|=+-||-|+-|+|.++
T Consensus 18 ~GNp~aVv~d~-~----~l~~~~mq~iA~~~~~~-------et~fv~~~~~ad~~~R~Fnpg-sE~~~CGh~t~~~a~~l 84 (299)
T 3edn_A 18 MGNPAGIVLDA-D----GLTEEEMQRIAEKVGFN-------ETSFVLSSEVADIRMRYFTPG-YEMDLCGHGTVGTIYAL 84 (299)
T ss_dssp SSEEEEEESCC-T----TCCHHHHHHHHHHHCSS-------CEEEEECCSSSSEEEEEECSS-CEESCCHHHHHHHHHHH
T ss_pred CCCCEEEEECC-C----CCCHHHHHHHHHHhCCC-------eEEEEecCCCCCEEEEEECCC-CccccCccHHHHHHHHH
Confidence 69998777533 1 45555566666554332 144665444457999999984 68788999999998888
Q ss_pred HHhCCC--CCceEEEccCccEEEEEe
Q 017920 318 VLEGHA--ERRCTVDLPGGPLDIEWK 341 (364)
Q Consensus 318 ~~~g~~--~~~~~V~~~GG~L~V~~~ 341 (364)
+..|.. ...+.++...|.|.+++.
T Consensus 85 ~~~g~~~~~~~~~~eT~aG~l~v~~~ 110 (299)
T 3edn_A 85 RERGLLEEKASLTIETKAGILPIQIG 110 (299)
T ss_dssp HHTTCSCSCSEEEEEETTEEEEEEEE
T ss_pred HHcCCCCCCCEEEEEcCceEEEEEEE
Confidence 888775 346889999999999886
No 20
>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein initiative, structural genomics, PSI, midwest center for ST genomics; 1.50A {Pseudomonas aeruginosa} SCOP: d.21.1.2 d.21.1.2
Probab=96.53 E-value=0.013 Score=54.99 Aligned_cols=99 Identities=12% Similarity=0.102 Sum_probs=68.6
Q ss_pred cCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEeC-CCeEEEEEeeCCCCCCCCchhhHHHHHHH
Q 017920 238 MGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIIS-PSQLKMRVWERGAGATLACGTGACAVVVA 316 (364)
Q Consensus 238 ~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~~-~~~i~~R~fErGvgEt~ACGTGa~A~a~a 316 (364)
.|||-.|+...+ .++...+.++...+. +. -+-|+...+ ...+++|+|.+. .|=+-||-|+-|+|.+
T Consensus 19 ~GNp~~Vv~~~~-----~l~~~~mq~ia~~~~----~s---et~fv~~~~~~~d~~~R~Ftp~-~E~~~CGh~t~~~a~~ 85 (288)
T 1u0k_A 19 TGNGLAVFDDAS-----ALDDAAMQAWTRELR----QF---ESIFLLPGDDPRAFRARIFTLE-EELPFAGHPLLGAAAL 85 (288)
T ss_dssp CSEEEEEESCCT-----TCCHHHHHHHHHHHC----CS---EEEEEEECSCTTEEEEEEEESS-CBCCSCCTHHHHHHHH
T ss_pred CCCceEEEeCCC-----CCCHHHHHHHHHHhC----CC---eEEEEecCCCCCcEEEEEECCC-CeeCcCchHHHHHHHH
Confidence 699987775331 344444555654432 12 245665423 567999999998 8988999999999988
Q ss_pred HH-HhCCCCC-ceEEEccCccEEEEEeecCCe---EEE
Q 017920 317 AV-LEGHAER-RCTVDLPGGPLDIEWKEEDNH---VYM 349 (364)
Q Consensus 317 a~-~~g~~~~-~~~V~~~GG~L~V~~~~~~~~---V~i 349 (364)
++ ..|.... .+.++.+.|.|.+++..+++. |.|
T Consensus 86 l~~~~g~~~~~~~~~et~aG~~~v~~~~~~~~~~~v~m 123 (288)
T 1u0k_A 86 LHHLRGGDNEQHWTLHLASKSVALRSVRAGSGFYAEMD 123 (288)
T ss_dssp HHHHHCCSSCEEEEEECSSCEEEEEEEEETTEEEEEEE
T ss_pred HHHhcCCCCCceEEEEeCCeEEEEEEEeCCCceeeEEE
Confidence 88 7887653 588999999999997533333 555
No 21
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiot biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A
Probab=96.52 E-value=0.0093 Score=56.39 Aligned_cols=101 Identities=13% Similarity=0.159 Sum_probs=64.3
Q ss_pred cCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEeCCCeEEEEEeeCCCCCCCCchhhHHHHHHHH
Q 017920 238 MGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317 (364)
Q Consensus 238 ~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~~~~~i~~R~fErGvgEt~ACGTGa~A~a~aa 317 (364)
.|||-.|++..+ .++...+.+++..+. +.+ +-|+...+...+++|+|-+. .|=+-||-|+-|+|. +
T Consensus 27 ~GNp~aVv~~~~-----~l~~~~mq~iA~e~~----~se---t~fv~p~~~~d~~~R~Ftp~-~E~~~CGh~t~~~a~-l 92 (307)
T 1qya_A 27 RGNSAGVVFPAD-----NLSEAQMQLIARELG----HSE---TAFLLHSDDSDVRIRYFTPT-VEVPICGHATVAAHY-V 92 (307)
T ss_dssp CSEEEEEEECCT-----TCCHHHHHHHHHHHC----CSC---EEEEECCSSSSEEEEEECSS-SEECC--CHHHHHHH-H
T ss_pred CcceeEEEeCCC-----CCCHHHHHHHHHHhC----Cce---EEEEEecCCCceEEEEECCC-CEeCCCchHHHHHHH-H
Confidence 599988876432 344445566665432 222 44555333457999999998 898889999998887 7
Q ss_pred HHhCCCCC--ceEEEccCccEEEEEeecC--CeEEEEec
Q 017920 318 VLEGHAER--RCTVDLPGGPLDIEWKEED--NHVYMTGP 352 (364)
Q Consensus 318 ~~~g~~~~--~~~V~~~GG~L~V~~~~~~--~~V~i~G~ 352 (364)
+..|.... .+.++...|.|.+++..++ +.+.|.=+
T Consensus 93 ~~~g~~~~~~~~~~et~aG~l~v~~~~~~~~~~v~~~~p 131 (307)
T 1qya_A 93 RAKVLGLGNCTIWQTSLAGKHRVTIEKHNDDYRISLEQG 131 (307)
T ss_dssp HHHHHTCCSEEEEEECC--CEEEEEEEETTEEEEEEECC
T ss_pred HHhCCCCCCceEEEEcCCeEEEEEEEccCCcceEEEecC
Confidence 76665543 5788899999999875432 34555443
No 22
>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex, covalently bound inhibitor, isomer; HET: ZDP; 1.35A {Haemophilus influenzae} SCOP: d.21.1.1 d.21.1.1 PDB: 1gqz_A* 2gkj_A* 2q9h_A* 2q9j_A 1bwz_A
Probab=96.43 E-value=0.05 Score=50.38 Aligned_cols=100 Identities=17% Similarity=0.205 Sum_probs=64.1
Q ss_pred CCCCcEEEEeCCCCCCCCCCHHHHHHhhhccCCcc-cceEEEEecCCCCCcEEEEEEeCCCCcCCCcchhHHHHHHHHHH
Q 017920 86 GLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIG-ADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 164 (364)
Q Consensus 86 g~GNdfvvid~~~~~~~~~~~~~~~~lcdR~~GIG-aDgvlfV~p~~~~ad~~mRiFnpDGsE~emCGNgtrc~a~~L~~ 164 (364)
..||+++|+.-.+.. .+.-.......+.+--.. .-++.|+... +..++++|+|-|---|=+-||-|+-|++.|+..
T Consensus 154 ~~G~~h~vv~v~~~~--~~~l~~~~~~~~~~~~~p~~~~v~~~~~~-~~~~~~~R~f~~Gv~Ed~acGSg~~A~a~~~~~ 230 (274)
T 2gke_A 154 SMGNPHCVVQVDDIQ--TANVEQLGPLLESHERFPERVNAGFMQII-NKEHIKLRVYERGAGETQACGSGACAAVAVGIM 230 (274)
T ss_dssp ESSSEEEEEECSCTT--TSCHHHHHHHHHTCTTCTTCCEEEEEEEE-ETTEEEEEEEETTTEECSCCHHHHHHHHHHHHH
T ss_pred ECCcCEEEEEeCCCC--hhhHHHHhHHHhhCccCCCCcEEEEEEEe-CCCEEEEEEECCCCCCCCCchHHHHHHHHHHHH
Confidence 369999887654322 121222233332221111 1245665432 345799999988434788999999999999988
Q ss_pred HccCCCCcEEEEEeCCeeEEEEEeeC
Q 017920 165 LENLNGKQSFTVHTGAGLIVPEIQDD 190 (364)
Q Consensus 165 ~~g~~~~~~i~ieT~aG~l~v~v~~~ 190 (364)
.|..+. .+++...+|.+.+++..+
T Consensus 231 -~g~~~~-~~~v~~~gG~l~v~~~~~ 254 (274)
T 2gke_A 231 -QGLLNN-NVQVDLPGGSLMIEWNGV 254 (274)
T ss_dssp -TTSSCS-EEEEEETTEEEEEEECCT
T ss_pred -hCCCCC-cEEEEcCCCEEEEEEEcC
Confidence 776544 577888999999888543
No 23
>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural PSI, protein structure initiative; 2.30A {Enterococcus faecalis} SCOP: d.21.1.2
Probab=96.38 E-value=0.023 Score=52.47 Aligned_cols=99 Identities=19% Similarity=0.192 Sum_probs=69.9
Q ss_pred cCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEeCCCeEEEEEeeCCCCCCCCchhhHHHHHHHH
Q 017920 238 MGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIISPSQLKMRVWERGAGATLACGTGACAVVVAA 317 (364)
Q Consensus 238 ~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~~~~~i~~R~fErGvgEt~ACGTGa~A~a~aa 317 (364)
.|||-.|+...+ .++...+.+++..+.. .+ +-|+... ...+++|+|-+. .|=+-||-|+-|+|.++
T Consensus 17 ~GNp~~Vv~~~~-----~l~~~~~q~ia~~~~~----se---t~fv~~~-~~d~~~R~Ftp~-~E~~~CGh~t~~~a~~l 82 (262)
T 1s7j_A 17 KGNPAAVYVLEK-----WLPEAVMQNIAIENNL----SE---TAFTVKE-GQSYALRWFTPE-REIDLCGHATLATAFVL 82 (262)
T ss_dssp SSEEEEEEECSS-----CCCHHHHHHHHHHHCC----SC---EEEEEEE-TTEEEEEEECSS-SEESCCHHHHHHHHHHH
T ss_pred CCCCeEEEECCC-----CCCHHHHHHHHHHhCC----CE---EEEEEcC-CCCEEEEEECCC-CccCcCchHHHHHHHHH
Confidence 699988886542 3444455666554321 22 3455433 467999999998 89888999999998888
Q ss_pred HHhCCCC-CceEEEccCccEEEEEeecCCeEEEEec
Q 017920 318 VLEGHAE-RRCTVDLPGGPLDIEWKEEDNHVYMTGP 352 (364)
Q Consensus 318 ~~~g~~~-~~~~V~~~GG~L~V~~~~~~~~V~i~G~ 352 (364)
+..|... ..+.++...|.|.+++.. +.+.|+=|
T Consensus 83 ~~~g~~~~~~~~~et~~G~l~v~~~~--~~v~m~~p 116 (262)
T 1s7j_A 83 FNYYSVAEETLHFTSQSGPLAVTKKE--EYYYLDFP 116 (262)
T ss_dssp HHHSCCCSSEEEEEETTEEEEEEEET--TEEEEEEE
T ss_pred HHhcCCCCCeEEEEeCceEEEEEEEC--CEEEEecC
Confidence 8888765 468899999999998742 45666655
No 24
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A
Probab=96.11 E-value=0.017 Score=54.38 Aligned_cols=101 Identities=16% Similarity=0.229 Sum_probs=67.7
Q ss_pred cCCCeEEEEeccCCcccccchhhHhhhCcccccCCCCCCceeEEEEEEeC-CCeEEEEEeeCCCCCCCCchhhHHHHHHH
Q 017920 238 MGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIIS-PSQLKMRVWERGAGATLACGTGACAVVVA 316 (364)
Q Consensus 238 ~GnpH~Vv~v~~~~~~~~l~~~~l~~lg~~le~~~~fp~~~Nv~fv~v~~-~~~i~~R~fErGvgEt~ACGTGa~A~a~a 316 (364)
.|||-.||+..+ .++...+.+++..+.. . -+-|+...+ ...+++|+|-+. .|=+-||-|+-|+|.+
T Consensus 36 ~GNp~aVv~~~~-----~l~~~~mq~IA~e~~~----s---Et~Fv~~~~~~~d~~lR~Ftp~-~E~~~CGhat~~~a~~ 102 (298)
T 1xub_A 36 EGNPVAVFFDAD-----DLPPAQMQRIAREMNL----S---ESTFVLKPRNGGDALIRIFTPV-NELPFAGAPLLGTAIA 102 (298)
T ss_dssp SSEEEEEECSGG-----GSCHHHHHHHHHHHCS----S---CEEEEECCSSSSSEEEEEECSS-CEESCCHHHHHHHHHH
T ss_pred CCCcEEEEECCC-----CCCHHHHHHHHHHhCC----c---eEEEEecCCCCCcEEEEEEcCC-CCcCcCchHHHHHHHH
Confidence 599988886542 4555555666655422 2 255665332 356999999998 8988899999888876
Q ss_pred HHHhCCCCCceEEEccCccEEEEEeecC---CeEEEEec
Q 017920 317 AVLEGHAERRCTVDLPGGPLDIEWKEED---NHVYMTGP 352 (364)
Q Consensus 317 a~~~g~~~~~~~V~~~GG~L~V~~~~~~---~~V~i~G~ 352 (364)
++.. .....+.++...|.|.|++..++ ..+.|.=|
T Consensus 103 l~~~-~~~~~~~~eT~aG~l~v~~~~~~~~~~~v~m~~p 140 (298)
T 1xub_A 103 LGAH-TDNHRLYLETQMGTIAFELERQNGSVIAASMDQP 140 (298)
T ss_dssp HHTT-CCCSEEEEEETTEEEEEEEEEETTEEEEEEEECC
T ss_pred HHHh-CCCCeEEEEeCCEEEEEEEEcCCCceEEEEEECC
Confidence 6544 32235788899999999876433 24565533
No 25
>2otn_A Diaminopimelate epimerase; DAP, lysine ME lanthionine, isomerase; 2.40A {Bacillus anthracis str}
Probab=95.74 E-value=0.095 Score=49.50 Aligned_cols=61 Identities=16% Similarity=0.302 Sum_probs=48.5
Q ss_pred CCcEEEEEEeCCCCcCCCcchhHHHHHHHHHHHccCCCCc-EEEEEeCCeeEEEEEeeCceEE
Q 017920 133 GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ-SFTVHTGAGLIVPEIQDDGKVK 194 (364)
Q Consensus 133 ~ad~~mRiFnpDGsE~emCGNgtrc~a~~L~~~~g~~~~~-~i~ieT~aG~l~v~v~~~g~v~ 194 (364)
..++++|+|-|---|=+-||-|+-|++.|+.. .|..+.. .++++...|.|.+++..++.|+
T Consensus 228 ~~~~~~R~fe~Gv~Ed~acGSg~~A~a~~~~~-~g~~~~~~~~~v~~rgG~L~v~~~~~~~V~ 289 (308)
T 2otn_A 228 EEEMNFRVWERGSGVTQACGTGACAAVVASIL-NGKMERGKEITVHLAGGDLMIAWTEEGNVL 289 (308)
T ss_dssp TTEEEEEEECSSSCBCSCCHHHHHHHHHHHHH-TTSSCTTCCEEEECSSCEEEEEECTTSCEE
T ss_pred CCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHH-hCCCCCCcEEEEEeCCceEEEEEEcCCcEE
Confidence 45799999998556888999999999999998 7776542 6899999999988875333333
No 26
>2azp_A Hypothetical protein PA1268; PA1268,APC5861,sulfur SAD, structural genomics, PSI, protein structure initiative; 2.13A {Pseudomonas aeruginosa}
Probab=95.53 E-value=0.14 Score=48.42 Aligned_cols=97 Identities=13% Similarity=0.062 Sum_probs=58.4
Q ss_pred CCCCcEEEEeCCCCCCCCCCHHHHHHhhhc--------c--C--CcccceEEEEecCCCCCcEEEEEE--eCCC--CcCC
Q 017920 86 GLGNDFILVDNRNSTEPRITPEQAAKLCDR--------N--F--GIGADGVIFAMPGVNGTDYTMRIF--NSDG--SEPE 149 (364)
Q Consensus 86 g~GNdfvvid~~~~~~~~~~~~~~~~lcdR--------~--~--GIGaDgvlfV~p~~~~ad~~mRiF--npDG--sE~e 149 (364)
..||+++|+...+......+.+...+++.+ + + +.+..++.+..+ ..++++|+| -|.+ -| +
T Consensus 161 ~~G~~~~vv~v~~~~l~p~d~~~l~~l~~~i~~~~~~~~~~~p~~~nv~~v~v~~~---~~~~~~R~fv~~p~~Gv~E-~ 236 (318)
T 2azp_A 161 WGGNWFFLVAGHGQRLAGDNLDALTAYTVAVQQALDDQDIRGEDGGAIDHIELFAD---DPHADSRNFVLCPGKAYDR-S 236 (318)
T ss_dssp ESSSEEEEEESCCCCCSTTCHHHHHHHHHHHHHHHHHTTCBCTTSCBCCEEEEEEE---ETTEEEEEEEECTTSCBCS-S
T ss_pred eCCceEEEEECCCcccccccHHHHHHHHHHHHHHHhhcCCCcCCcCceEEEEEEeC---CCCccEEEEEEeCCCcccc-C
Confidence 359999888765421111023444455422 1 1 223556666543 347999999 4432 37 9
Q ss_pred CcchhHHHHHHHHHHHccCCCCc-EE-EEEeCCeeEEEEE
Q 017920 150 MCGNGVRCFARFIAELENLNGKQ-SF-TVHTGAGLIVPEI 187 (364)
Q Consensus 150 mCGNgtrc~a~~L~~~~g~~~~~-~i-~ieT~aG~l~v~v 187 (364)
-||-|+-|++.||.+ +|..+++ .+ +....+|...+++
T Consensus 237 acGSg~~A~a~~l~~-~g~~~~~~~~~q~~~~G~~~~l~v 275 (318)
T 2azp_A 237 PCGTGTSAKLACLAA-DGKLLPGQPWRQASVIGSQFEGRY 275 (318)
T ss_dssp CCHHHHHHHHHHHHH-TTSSCTTCCEEEECTTSCEEEEEE
T ss_pred CCHHHHHHHHHHHHH-cCCCCCCCeEEEEEecCCCEEEEE
Confidence 999999999999999 7766532 44 4445566654444
No 27
>1tm0_A Proline racemase; structural genomics, alpha-beta protein THAT resembles doubl barrel, in EACH of which AN alpha helix is sandwiched, PSI; 2.80A {Brucella melitensis} SCOP: d.21.1.3
Probab=92.97 E-value=0.37 Score=46.34 Aligned_cols=71 Identities=13% Similarity=0.243 Sum_probs=53.1
Q ss_pred EEEEEEe--CCCeEEEEEeeCCCCCCCCchhhHHHHHHHHHHhCCCC-----CceEEEccCccEEEEEeecCC---eEEE
Q 017920 280 TEFVEII--SPSQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAE-----RRCTVDLPGGPLDIEWKEEDN---HVYM 349 (364)
Q Consensus 280 v~fv~v~--~~~~i~~R~fErGvgEt~ACGTGa~A~a~aa~~~g~~~-----~~~~V~~~GG~L~V~~~~~~~---~V~i 349 (364)
..|+... +...+++|+|.+. ||-+-||-|+-+++.+++..|..+ ..+.++.+.|.+.+++..+++ .|.|
T Consensus 63 g~fv~~p~~~~aD~~~rifn~d-ge~~mCGhgt~~~a~~l~e~Glv~~~~~~~~~~ieT~aG~v~v~v~~~~g~v~~v~~ 141 (350)
T 1tm0_A 63 VNLLVPPKDPRAQMGFIIMEPA-DTPPMSGSNSICVSTVLLDSGIIAMQEPVTHMVLEAPGGIIEVEAECRNGKAERISV 141 (350)
T ss_dssp EEEEECCCSSSCSEEEECCCSS-CCCSCCHHHHHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEEECSSSEEEEEE
T ss_pred EEEEeCCCCCCCCEEEEEEECC-CccccccchHHHHHHHHHHcCCCCCCCCCcEEEEECCCeEEEEEEEeCCCcEEEEEE
Confidence 4555432 2457999999985 478999999999998888888765 247788999999998853333 4677
Q ss_pred Ee
Q 017920 350 TG 351 (364)
Q Consensus 350 ~G 351 (364)
.+
T Consensus 142 ~~ 143 (350)
T 1tm0_A 142 RN 143 (350)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 28
>1w61_A B-cell mitogen; racemase, racemase pyridoxal phosphate-independent, stereo inversion, acid/base catalysis, homodimer, alpha/beta domains; 2.1A {Trypanosoma cruzi} PDB: 1w62_A
Probab=91.05 E-value=1.5 Score=43.31 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=49.0
Q ss_pred CCeEEEEEeeCCCCCCCCchhhHHHHHHHHHHhCC--CC-----CceEEEccCccEEEEEeecCC------eEEEE
Q 017920 288 PSQLKMRVWERGAGATLACGTGACAVVVAAVLEGH--AE-----RRCTVDLPGGPLDIEWKEEDN------HVYMT 350 (364)
Q Consensus 288 ~~~i~~R~fErGvgEt~ACGTGa~A~a~aa~~~g~--~~-----~~~~V~~~GG~L~V~~~~~~~------~V~i~ 350 (364)
...+++|+|.+. ||-+-||-|+-+++.+++..|. .+ ..+.++.+.|.+.+++..+++ .|.+.
T Consensus 113 ~AD~~vRiFnpd-Ge~~mCGHgTi~~a~~L~e~Gl~~v~~~~~~~~i~lET~aGlV~v~v~~~dg~~~~v~~V~v~ 187 (414)
T 1w61_A 113 GADLGIVFMDTG-GYLNMCGHNSIAAVTAAVETGIVSVPAKATNVPVVLDTPAGLVRGTAHLQSGTESEVSNASII 187 (414)
T ss_dssp TCSEEEEEEESS-CCCSCCHHHHHHHHHHHHHTTSSCCCTTCSEEEEEEEETTEEEEEEEEECTTCSSCEEEEEEE
T ss_pred CCCEEEEEECCC-CchhcCcCcHHHHHHHHHHcCCcccCCCCCCceEEEEcCCeEEEEEEEeCCCccceEEEEEEe
Confidence 457999999985 4889999999999988888887 64 247789999999998853333 36665
No 29
>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A*
Probab=89.35 E-value=6 Score=37.50 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=46.8
Q ss_pred EEEEEEe-CCCeEEEEEeeCCCCCCCCchhhHHHHHHHHHH-hCCCC-CceEEEccCccEEEEEee
Q 017920 280 TEFVEII-SPSQLKMRVWERGAGATLACGTGACAVVVAAVL-EGHAE-RRCTVDLPGGPLDIEWKE 342 (364)
Q Consensus 280 v~fv~v~-~~~~i~~R~fErGvgEt~ACGTGa~A~a~aa~~-~g~~~-~~~~V~~~GG~L~V~~~~ 342 (364)
+-|+... ....+++|+|.+--.|-.-||-|+-++|.|++. .|..+ ..+.+..+.|.+.+++..
T Consensus 72 ll~v~~~~~~aD~~mr~FN~DGSEaemCGNGtRc~A~~l~~~~g~~~~~~~~ieT~aG~l~v~~~~ 137 (317)
T 3ejx_A 72 VIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQD 137 (317)
T ss_dssp EEEEEECSTTCSEEEEEEETTSCCCSCCHHHHHHHHHHHHHHTTCCSCCBCCEEETTEEEEEEECT
T ss_pred EEEEcCCCCCCCEEEEEEcCCCCeeccCccHHHHHHHHHHHhcCCCCCceEEEEeCCeEEEEEEcC
Confidence 4455443 346799999988434666699999998888887 67764 368899999999888753
No 30
>2pw0_A PRPF methylaconitate isomerase; propionate catabolism, diaminopimelate epimerase like, aconi binding, unknown function; HET: TRC; 1.57A {Shewanella oneidensis} PDB: 2pvz_A 2h9f_A
Probab=88.99 E-value=1.8 Score=42.33 Aligned_cols=109 Identities=12% Similarity=0.092 Sum_probs=71.3
Q ss_pred ceEEEeeeCCCCcEEEEeCCCCCCC-CCCHHH-------------HHHhhhccCCcc-----------cceEEEEecCCC
Q 017920 78 FLHFVKYHGLGNDFILVDNRNSTEP-RITPEQ-------------AAKLCDRNFGIG-----------ADGVIFAMPGVN 132 (364)
Q Consensus 78 ~i~F~K~~g~GNdfvvid~~~~~~~-~~~~~~-------------~~~lcdR~~GIG-----------aDgvlfV~p~~~ 132 (364)
.++.+-.. .||+|++|++.+.... ..+++. ++..+...+|+. ..-+.|+.++.+
T Consensus 212 ~v~vtlid-~G~p~v~V~A~dlG~~g~E~p~~i~~d~~ll~~~e~IR~~aa~~mgl~~~~~~a~~~~~vPkv~~vs~p~~ 290 (397)
T 2pw0_A 212 RFNATMIN-AGIPTIFINAEDLGYTGTELQDDINSDNAALAKFETIRAHGALRMGLIKHIDEAASRQHTPKIAFVAPPKS 290 (397)
T ss_dssp EEEEEEEE-BSSEEEEEEGGGGTCCSCCCHHHHTTCHHHHHHHHHHHHHHHHHTTSCSSGGGGGGCCSSSEEEEEESCCC
T ss_pred CEEEEEEe-CCceEEEEEHHHcCCCCccCHHHhccCHHHHHHHHHHHHHHHhhCCccCChhHccccCCCCEEEEEeCCCc
Confidence 45555444 5999999998754211 111222 345555667775 344888877632
Q ss_pred CC------------cEEEEEEeCCCCcCCCcchhHHHHHHHHHHHccCC--------CCcEEEEEeCCeeEEEEEe
Q 017920 133 GT------------DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLN--------GKQSFTVHTGAGLIVPEIQ 188 (364)
Q Consensus 133 ~a------------d~~mRiFnpDGsE~emCGNgtrc~a~~L~~~~g~~--------~~~~i~ieT~aG~l~v~v~ 188 (364)
.. |...|+|-+-.---.+||=|+.|.|....- .|-+ ....++|+..+|.+.+..+
T Consensus 291 ~~~~~g~~~~~~~~~i~vr~~s~g~~HrS~~gTGava~a~Aa~i-~GTv~~~~~~~~~~~~v~i~HPsG~~~v~~~ 365 (397)
T 2pw0_A 291 YASSSGKTVAAEDVDLLVRALSMGKLHHAMMGTAAVAIGTAAAI-PGTLVNLAAGGGEKEAVRFGHPSGTLRVGAQ 365 (397)
T ss_dssp EECTTSCEECGGGCSEEEEEEETTEECSSCCHHHHHHHHHHHTS-TTSHHHHHTTSSCCSEEEEEETTEEEEEEEE
T ss_pred cccccccccccccCcEEEEEeeCCCcccCcCcHHHHHHHHHHhc-CCcHHHHHhccCCCCeEEEeCCCeEEEEEEE
Confidence 22 688999988544457999999998887654 3311 2356999999999988764
No 31
>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid biosynthesis, isomerase, lysine biosy; 2.60A {Mycobacterium tuberculosis}
Probab=88.51 E-value=1.5 Score=41.11 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=44.1
Q ss_pred CeEEEEEeeCCCCCCCCchhhHHHHHHHHHHhCCCCC-ceEEEccCccEEEEEeec
Q 017920 289 SQLKMRVWERGAGATLACGTGACAVVVAAVLEGHAER-RCTVDLPGGPLDIEWKEE 343 (364)
Q Consensus 289 ~~i~~R~fErGvgEt~ACGTGa~A~a~aa~~~g~~~~-~~~V~~~GG~L~V~~~~~ 343 (364)
..+++|+|.+--.|-.-||-|+-++|.|++..|..+. .+.+..+.|.+.+++..+
T Consensus 71 ad~~mr~fN~DGSEaemCGNg~Rc~a~~l~~~g~~~~~~~~ieT~aG~~~v~~~~~ 126 (290)
T 3fve_A 71 TDWYMDYRNADGSAAQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCHHV 126 (290)
T ss_dssp TSEEEEEEETTSCBCCTTCTTHHHHHHHHHHTTSCCCSEEEEECTTCCEEEEEEEE
T ss_pred CCEEEEEECCCCCccccccchHHHHHHHHHHhCCCCCceEEEEeCCeEEEEEEEcC
Confidence 5799999998334666699999888888888887653 688999999999887643
No 32
>3g7k_A 3-methylitaconate isomerase; DAPF family fold, closed conformation, open conformation; 2.70A {Eubacterium barkeri}
Probab=76.32 E-value=22 Score=34.59 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=71.6
Q ss_pred cceEEEeeeCCCCcEEEEeCCCCCCC-CCCHH-------------HHHHhhhccCCcccc------------eEEEEecC
Q 017920 77 GFLHFVKYHGLGNDFILVDNRNSTEP-RITPE-------------QAAKLCDRNFGIGAD------------GVIFAMPG 130 (364)
Q Consensus 77 ~~i~F~K~~g~GNdfvvid~~~~~~~-~~~~~-------------~~~~lcdR~~GIGaD------------gvlfV~p~ 130 (364)
+.++.+=..+ ||+|++|++.+.... .++++ .++..+...+|++-| =+.||.|+
T Consensus 192 g~v~vt~id~-g~P~v~v~A~dlG~~G~E~p~~l~ad~~ll~rlE~IR~~aa~~MGL~~~~~~a~~~~~~~PKi~lVspp 270 (391)
T 3g7k_A 192 GDIDVSIVDV-ANPCIFVHAKDVNMTGTETPDVINGNADLLAYLEEIRAKCCVKIGMAATEKEASEKSPAFPMIAFVTKP 270 (391)
T ss_dssp CCEEEEEEEB-SSEEEEEESGGGTCCSCCCHHHHHTCHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHCSSSSEEEEEESC
T ss_pred CcEEEEEEec-CccEEEEEHHHcCCCCccCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCChhHhccccCCCCeEEEEeCC
Confidence 3566665554 999999988643211 11221 245556677888843 34677665
Q ss_pred CC-------------CCcEEEEEEeCCCCcCCCcchhHHHHHHHHHHHccC-----C----CCcEEEEEeCCeeEEEEE
Q 017920 131 VN-------------GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENL-----N----GKQSFTVHTGAGLIVPEI 187 (364)
Q Consensus 131 ~~-------------~ad~~mRiFnpDGsE~emCGNgtrc~a~~L~~~~g~-----~----~~~~i~ieT~aG~l~v~v 187 (364)
.+ +.|...|+|.+-.---.+-+-|..|+|....- .|- . ....++|+..+|.+.+.+
T Consensus 271 ~~~~~~~~G~~i~~~~~Di~vR~~sm~~~H~a~~~Tgav~la~Aa~i-pGTv~~~~~~~~~~~~~v~igHPsG~l~v~~ 348 (391)
T 3g7k_A 271 EDYVDFSTGNTISGDDVDLVSRLMFMQVLHKTYAGTATACTGSAARI-PGTIVNQVLRDTGDEDTVRIGHPAGVIPVVS 348 (391)
T ss_dssp CCEECTTTCCEECTTSCSEEEEEECSSSBCSSCCHHHHHHHHHHHHS-TTSHHHHHCCCCTTCCEEEEEETTEEEEEEE
T ss_pred CccccccCCccccccccCEEEEEecCCCcchhhhhHHHHHHHHHHhC-CCcHHHHhhccCCCCceEEEecCCEEEEEEE
Confidence 32 13789999988555567788899999887654 441 1 124699999999998876
No 33
>1sr8_A Cobalamin biosynthesis protein (CBID); structural genomics, PSI, protein structure initiative, center for structural genomics, MCSG; 1.90A {Archaeoglobus fulgidus} SCOP: e.54.1.1
Probab=21.07 E-value=55 Score=30.58 Aligned_cols=38 Identities=34% Similarity=0.488 Sum_probs=21.6
Q ss_pred CCCCCchhhHHHHHHHHHHh-CCCCCceEEEccCcc-EEEEE
Q 017920 301 GATLACGTGACAVVVAAVLE-GHAERRCTVDLPGGP-LDIEW 340 (364)
Q Consensus 301 gEt~ACGTGa~A~a~aa~~~-g~~~~~~~V~~~GG~-L~V~~ 340 (364)
|.| +||.|+|+|.+|.+. -.....+.|.+|.|. +.+.+
T Consensus 41 GyT--TGtcAaAAAkAA~~~L~~~~~~V~I~lP~G~~~~i~v 80 (298)
T 1sr8_A 41 GIT--TGTTASAAAVAAIASLKEKVEKVKVSTPAGVDVEVEV 80 (298)
T ss_dssp EEC--HHHHHHHHHHHHHHGGGSCEEEEEECCTTSCCEEEEE
T ss_pred CcC--HHHHHHHHHHHHHHHHHcCCceEEEECCCCCEEEEEE
Confidence 566 666666666444442 122346788888774 55444
Done!