Your job contains 1 sequence.
>017922
MTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTAD
DLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRR
PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETERA
RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKG
NQSKDSYGRPQKLVEFQSNAGIIASLYVRKMVCDEPSNQIVVKKRTFEGEENAGVSKKHN
IKWINEEEKIADTNQCKCEDHLKVIERLKRELREKDFQISMQDKNISDLKKKVAEMKDQK
SRRR
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017922
(364 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2083163 - symbol:SDN1 "small RNA degrading nuc... 826 2.2e-82 1
TAIR|locus:2155563 - symbol:SDN3 "small RNA degrading nuc... 772 1.1e-76 1
TAIR|locus:2169717 - symbol:SDN2 "small RNA degrading nuc... 735 9.6e-73 1
TAIR|locus:2083153 - symbol:AT3G50090 species:3702 "Arabi... 623 7.1e-61 1
TAIR|locus:2145244 - symbol:AT5G25800 species:3702 "Arabi... 296 1.6e-25 1
UNIPROTKB|E1BR93 - symbol:LOC427001 "Uncharacterized prot... 292 9.1e-25 1
UNIPROTKB|F1P5D1 - symbol:LOC427001 "Uncharacterized prot... 292 9.5e-25 1
POMBASE|SPAC637.09 - symbol:SPAC637.09 "ribonuclease H70 ... 288 1.6e-24 1
ASPGD|ASPL0000067196 - symbol:AN7566 species:162425 "Emer... 285 4.7e-24 1
DICTYBASE|DDB_G0291590 - symbol:rexo1 "RNA exonuclease 1"... 277 3.1e-23 1
SGD|S000003508 - symbol:RNH70 "3'-5' exoribonuclease" spe... 270 1.0e-22 1
UNIPROTKB|Q8IX06 - symbol:REXO1L1 "Exonuclease GOR" speci... 269 2.1e-22 1
WB|WBGene00015462 - symbol:C05C8.5 species:6239 "Caenorha... 267 5.2e-22 1
UNIPROTKB|A0PJM3 - symbol:REXO1L2P "Putative exonuclease ... 266 9.6e-22 1
UNIPROTKB|F5GW92 - symbol:REXO1L10P "Protein REXO1L10P" s... 266 1.4e-21 1
CGD|CAL0006149 - symbol:orf19.6195 species:5476 "Candida ... 264 5.4e-21 1
ZFIN|ZDB-GENE-030131-1650 - symbol:rexo1 "REX1, RNA exonu... 264 1.2e-20 1
UNIPROTKB|Q2T9U5 - symbol:Q2T9U5 "Putative RNA exonucleas... 259 4.1e-20 1
UNIPROTKB|F1SDH3 - symbol:LOC100525449 "Uncharacterized p... 261 4.2e-20 1
FB|FBgn0035707 - symbol:CG8368 species:7227 "Drosophila m... 257 6.4e-20 1
FB|FBgn0036405 - symbol:CG6833 species:7227 "Drosophila m... 236 9.5e-20 1
UNIPROTKB|E2RFH4 - symbol:LOC479820 "Uncharacterized prot... 256 1.0e-19 1
UNIPROTKB|E2RFH9 - symbol:LOC479820 "Uncharacterized prot... 256 1.1e-19 1
UNIPROTKB|E2QX02 - symbol:REXO1 "Uncharacterized protein"... 258 1.2e-19 1
MGI|MGI:1914182 - symbol:Rexo1 "REX1, RNA exonuclease 1 h... 256 2.3e-19 1
UNIPROTKB|G4MYV4 - symbol:MGG_15523 "Uncharacterized prot... 253 2.7e-19 1
UNIPROTKB|Q96IC2 - symbol:44M2.3 "Putative RNA exonucleas... 253 3.1e-19 1
UNIPROTKB|E1BDF8 - symbol:LOC788506 "Uncharacterized prot... 255 3.3e-19 1
RGD|1305412 - symbol:Exnef "exonuclease NEF-sp" species:1... 251 5.3e-19 1
UNIPROTKB|F1M6V9 - symbol:Exnef "Protein Exnef" species:1... 251 5.3e-19 1
RGD|1564472 - symbol:RGD1564472 "similar to Transcription... 246 7.4e-19 1
UNIPROTKB|Q8N1G1 - symbol:REXO1 "RNA exonuclease 1 homolo... 249 2.1e-18 1
UNIPROTKB|F1P0Z1 - symbol:REXO1 "Uncharacterized protein"... 246 5.0e-18 1
FB|FBgn0261548 - symbol:CG42666 species:7227 "Drosophila ... 239 1.9e-17 1
WB|WBGene00013244 - symbol:Y56A3A.33 species:6239 "Caenor... 230 2.6e-17 1
UNIPROTKB|H3BQ98 - symbol:LOC81691 "Protein LOC81691" spe... 215 2.6e-17 1
ZFIN|ZDB-GENE-120215-216 - symbol:si:ch73-209e20.4 "si:ch... 232 2.9e-17 1
FB|FBgn0039544 - symbol:CG12877 species:7227 "Drosophila ... 237 4.8e-17 1
UNIPROTKB|Q9GZR2 - symbol:REXO4 "RNA exonuclease 4" speci... 227 1.2e-16 1
POMBASE|SPBC1604.09c - symbol:SPBC1604.09c "exoribonuclea... 209 1.3e-16 1
UNIPROTKB|F1P8U5 - symbol:F1P8U5 "Uncharacterized protein... 224 1.6e-16 1
WB|WBGene00012465 - symbol:Y17G7B.12 species:6239 "Caenor... 208 1.6e-16 1
UNIPROTKB|F1N3K9 - symbol:LOC100335177 "Uncharacterized p... 224 2.0e-16 1
UNIPROTKB|Q66UW5 - symbol:Isg20 "Interferon-stimulated ge... 202 7.8e-16 1
UNIPROTKB|I3LB04 - symbol:ISG20 "Uncharacterized protein"... 201 1.0e-15 1
UNIPROTKB|F1PBR5 - symbol:REXO4 "Uncharacterized protein"... 219 1.0e-15 1
UNIPROTKB|F1RPB4 - symbol:F1RPB4 "Uncharacterized protein... 224 1.2e-15 1
MGI|MGI:2684957 - symbol:Rexo4 "REX4, RNA exonuclease 4 h... 219 1.2e-15 1
UNIPROTKB|H9KZR7 - symbol:H9KZR7 "Uncharacterized protein... 217 1.3e-15 1
UNIPROTKB|I3LLP7 - symbol:I3LLP7 "Uncharacterized protein... 225 1.3e-15 1
UNIPROTKB|I3L751 - symbol:REXO4 "Uncharacterized protein"... 218 1.5e-15 1
UNIPROTKB|F1NQP7 - symbol:Gga.48606 "Uncharacterized prot... 217 1.8e-15 1
TAIR|locus:2086320 - symbol:AT3G15080 species:3702 "Arabi... 201 2.0e-15 1
RGD|1306220 - symbol:Rexo4 "REX4, RNA exonuclease 4 homol... 216 2.4e-15 1
UNIPROTKB|E2R2F5 - symbol:ISG20 "Uncharacterized protein"... 196 3.7e-15 1
ZFIN|ZDB-GENE-061013-448 - symbol:zgc:152968 "zgc:152968"... 225 4.3e-15 2
RGD|1306407 - symbol:Isg20 "interferon stimulated exonucl... 193 8.0e-15 1
UNIPROTKB|E1BNM5 - symbol:ISG20 "Uncharacterized protein"... 192 1.0e-14 1
UNIPROTKB|G3N2Q8 - symbol:ISG20 "Uncharacterized protein"... 192 1.0e-14 1
UNIPROTKB|Q96AZ6 - symbol:ISG20 "Interferon-stimulated ge... 190 1.7e-14 1
UNIPROTKB|F6X5D6 - symbol:ISG20 "Uncharacterized protein"... 189 2.2e-14 1
UNIPROTKB|F1N5B5 - symbol:REXO4 "Uncharacterized protein"... 207 2.6e-14 1
SGD|S000005440 - symbol:REX4 "Putative RNA exonuclease po... 198 4.4e-14 1
CGD|CAL0003518 - symbol:orf19.5220 species:5476 "Candida ... 193 1.8e-13 1
ASPGD|ASPL0000065793 - symbol:AN10955 species:162425 "Eme... 193 3.0e-13 1
UNIPROTKB|E2R7T9 - symbol:REXO4 "Uncharacterized protein"... 194 1.1e-12 1
UNIPROTKB|H3BM72 - symbol:LOC81691 "Protein LOC81691" spe... 171 2.2e-12 1
UNIPROTKB|Q8WTP8 - symbol:AEN "Apoptosis-enhancing nuclea... 186 3.4e-12 1
POMBASE|SPAC1782.08c - symbol:rex3 "exonuclease Rex3 (pre... 191 3.8e-12 1
WB|WBGene00004095 - symbol:pqe-1 species:6239 "Caenorhabd... 196 5.1e-12 1
ZFIN|ZDB-GENE-070928-8 - symbol:isg20l2 "interferon stimu... 183 7.4e-12 1
DICTYBASE|DDB_G0281327 - symbol:rexo4 "RNA exonuclease 4"... 180 1.2e-11 1
UNIPROTKB|Q5REE2 - symbol:AEN "Apoptosis-enhancing nuclea... 181 1.4e-11 1
UNIPROTKB|F1RHI9 - symbol:ISG20L2 "Uncharacterized protei... 178 3.7e-11 1
TAIR|locus:2066406 - symbol:AT2G48100 species:3702 "Arabi... 178 3.8e-11 1
MGI|MGI:2140076 - symbol:Isg20l2 "interferon stimulated e... 178 4.7e-11 1
MGI|MGI:1915298 - symbol:Aen "apoptosis enhancing nucleas... 176 6.0e-11 1
CGD|CAL0006310 - symbol:orf19.4948 species:5476 "Candida ... 178 6.0e-11 1
RGD|1359413 - symbol:Isg20l2 "interferon stimulated exonu... 177 6.2e-11 1
UNIPROTKB|Q2YDK1 - symbol:ISG20L2 "Interferon-stimulated ... 176 6.8e-11 1
UNIPROTKB|J9PA78 - symbol:AEN "Uncharacterized protein" s... 174 9.1e-11 1
RGD|1305051 - symbol:Aen "apoptosis enhancing nuclease" s... 174 9.9e-11 1
UNIPROTKB|F1PWV6 - symbol:AEN "Uncharacterized protein" s... 174 1.0e-10 1
UNIPROTKB|F1MZX4 - symbol:LOC614749 "Uncharacterized prot... 173 1.2e-10 1
UNIPROTKB|F8WG03 - symbol:Aen "Apoptosis-enhancing nuclea... 174 1.2e-10 1
UNIPROTKB|Q9H9L3 - symbol:ISG20L2 "Interferon-stimulated ... 173 1.6e-10 1
UNIPROTKB|H9L3P1 - symbol:H9L3P1 "Uncharacterized protein... 171 2.1e-10 1
UNIPROTKB|H9L3P2 - symbol:H9L3P2 "Uncharacterized protein... 171 2.1e-10 1
UNIPROTKB|E2QS77 - symbol:ISG20L2 "Uncharacterized protei... 170 3.3e-10 1
SGD|S000004097 - symbol:REX3 "RNA exonuclease" species:49... 171 3.8e-10 1
UNIPROTKB|F1SRT3 - symbol:AEN "Uncharacterized protein" s... 168 4.6e-10 1
MGI|MGI:1928895 - symbol:Isg20 "interferon-stimulated pro... 164 1.0e-09 1
TAIR|locus:2086839 - symbol:AT3G27970 species:3702 "Arabi... 152 4.1e-08 1
UNIPROTKB|H0YMM4 - symbol:ISG20 "Interferon-stimulated ge... 126 1.9e-07 1
UNIPROTKB|E1C018 - symbol:AEN "Uncharacterized protein" s... 143 2.8e-07 1
ASPGD|ASPL0000070457 - symbol:AN4357 species:162425 "Emer... 146 4.5e-07 1
TAIR|locus:2170533 - symbol:AT5G40310 species:3702 "Arabi... 134 4.2e-06 1
UNIPROTKB|H3BLY5 - symbol:ISG20 "Interferon-stimulated ge... 111 8.1e-06 1
ASPGD|ASPL0000071877 - symbol:AN5013 species:162425 "Emer... 116 2.0e-05 2
DICTYBASE|DDB_G0269694 - symbol:pan2 "polyA specific ribo... 133 4.4e-05 1
WARNING: Descriptions of 8 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2083163 [details] [associations]
symbol:SDN1 "small RNA degrading nuclease 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0010587 "miRNA catabolic process" evidence=IDA]
InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR012677
SMART:SM00479 Pfam:PF00929 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
GO:GO:0008408 EMBL:AL132978 KO:K14570 GO:GO:0010587 EMBL:BT030315
IPI:IPI00540352 PIR:T45863 RefSeq:NP_190579.2 UniGene:At.35533
ProteinModelPortal:A3KPE8 SMR:A3KPE8 PaxDb:A3KPE8 PRIDE:A3KPE8
EnsemblPlants:AT3G50100.1 GeneID:824172 KEGG:ath:AT3G50100
TAIR:At3g50100 HOGENOM:HOG000083886 InParanoid:A3KPE8 OMA:DYRTDIT
PhylomeDB:A3KPE8 ProtClustDB:CLSN2925541 Genevestigator:A3KPE8
Uniprot:A3KPE8
Length = 409
Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
Identities = 162/277 (58%), Positives = 212/277 (76%)
Query: 1 MTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTAD 60
M S M AVDCEMVLCEDG+EGLVR+ VVDR+LKV +DE VKP K V DYR++ITG+TA+
Sbjct: 135 MESTNMVAVDCEMVLCEDGTEGLVRVGVVDRDLKVILDEFVKPNKPVVDYRTDITGITAE 194
Query: 61 DLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVD--EY 118
D+ + S+ +IQ+ ++ LS GTILVGHSLN DLEVLK+DHP+VIDT+L+FKY + +
Sbjct: 195 DIENASLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKIDHPKVIDTALVFKYPNTRKL 254
Query: 119 RRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETE 178
RRPSL NLCKS+LGYE+RK G PH+C+ DASAAMKL LA++E+RVD + +E + E E
Sbjct: 255 RRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKLALAVVEKRVDTTIKPSKE-MLEVE 313
Query: 179 RARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENV 238
+A+LFLH+IP VPSEEL V+ G FT++ K K +G Y AFA+F S ++A+QAFE++
Sbjct: 314 KAKLFLHKIPNNVPSEELEQVLSGKFTLDVKQAKT-QGRYYCAFALFHSSEDADQAFEHI 372
Query: 239 KGNQSKDSYGRPQKLVEFQSNAGIIASLYVRKMVCDE 275
G + DS G PQK+V + ++G AS+YVRKMV DE
Sbjct: 373 DGIEMTDSLGLPQKVVIIKLSSGSRASIYVRKMVQDE 409
>TAIR|locus:2155563 [details] [associations]
symbol:SDN3 "small RNA degrading nuclease 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0016592 "mediator complex" evidence=IDA]
InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00479 Pfam:PF00929 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0004527
GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
EMBL:AB020742 GO:GO:0016592 KO:K14570 UniGene:At.28408
UniGene:At.71151 EMBL:AY080843 EMBL:BT001977 IPI:IPI00524191
RefSeq:NP_201525.2 ProteinModelPortal:Q8RXK2 SMR:Q8RXK2
IntAct:Q8RXK2 STRING:Q8RXK2 PaxDb:Q8RXK2 PRIDE:Q8RXK2
EnsemblPlants:AT5G67240.1 GeneID:836859 KEGG:ath:AT5G67240
TAIR:At5g67240 HOGENOM:HOG000154279 InParanoid:Q8RXK2 OMA:LYVRKMV
PhylomeDB:Q8RXK2 ProtClustDB:CLSN2918891 Genevestigator:Q8RXK2
Uniprot:Q8RXK2
Length = 782
Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
Identities = 166/346 (47%), Positives = 230/346 (66%)
Query: 3 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL 62
S M ++DCEMV CEDGS+ LVR+ VDR+LKV +D+ VKP+K V DY+++ITG+TA+DL
Sbjct: 142 STRMLSIDCEMVTCEDGSQALVRVGAVDRDLKVVLDKFVKPDKPVIDYKTDITGVTAEDL 201
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVD--EYRR 120
T S+A+IQK++++ LS GTILVGH L+NDL+VL++DH RVIDTS +F++VD + +R
Sbjct: 202 ERATLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRIDHARVIDTSYVFEFVDAPKTQR 261
Query: 121 PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAV-PLLQEDVAETER 179
PSL NLCKSVLG E+R G HNC+ DA+AAMKLVLA +E+ + P + VAE R
Sbjct: 262 PSLNNLCKSVLGQEVRMDGAAHNCVHDAAAAMKLVLAAVEKGAATLIQPTEEMMVAEKRR 321
Query: 180 ---------ARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQE 230
A+LFLH+IP VPSEELHGV+ G+FT+ K K G A FSSP+E
Sbjct: 322 QEARQEAGKAQLFLHKIPHDVPSEELHGVLSGNFTLVVKPPKT--GGYSTAVVDFSSPEE 379
Query: 231 ANQAFENVKGNQSKDSYGRPQKLVEFQSNAGIIASLYVRKMVCDEPSNQIVVKKRTFEGE 290
AN+AFENV+G+ +KD G PQK + ++G+ SL+VRKMV D+ +I +R E
Sbjct: 380 ANEAFENVEGDVAKDKSGLPQKKAVLKLSSGLAVSLFVRKMVQDDSPCEISTSERA-RAE 438
Query: 291 ENAGVSKKHNIKWINEEEKIADTNQCKCEDHLKVIERLKRELREKD 336
EN SK+ + EE K A NQ + + + ++ ++ ++
Sbjct: 439 ENNVSSKRQKTEDETEETKEATVNQREADKTKLFLHKIPHDVPSQE 484
Score = 325 (119.5 bits), Expect = 2.7e-28, P = 2.7e-28
Identities = 84/189 (44%), Positives = 111/189 (58%)
Query: 176 ETERARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAF 235
E ++ +L LH+IP VPS+EL VI G FT+E KR +G Y A F+SP+EAN+AF
Sbjct: 604 EADKTKLLLHKIPLNVPSQELKVVITGQFTLEVMPPKR-KGRYYNAVVTFNSPEEANKAF 662
Query: 236 ENVKGNQSKDSYGRPQKLVEFQSNAGIIASLYVRKMVCDEPSNQIVVKKRTFEGEENAGV 295
E VKG K+ G QK+V F+ ++G A LYVRKMV DE K E NA
Sbjct: 663 EKVKGEAVKEKGGLAQKMVAFKLSSGSGACLYVRKMVQDESEE---TK------EANANH 713
Query: 296 SKKHNIKWINE-EEKI-ADTNQCKCEDHLKVIERLKRELREKDFQISMQDKNISDLKKKV 353
+ ++K + E +EK+ A CE H K IE LK++L K+ QI QDK I++LK K+
Sbjct: 714 CEDDHLKEMEELKEKLKAMEFAISCEGHSKEIEELKQKLNAKEHQIQAQDKIIANLKMKL 773
Query: 354 AEMKDQKSR 362
E K KSR
Sbjct: 774 -EKKQSKSR 781
Score = 312 (114.9 bits), Expect = 6.9e-27, P = 6.9e-27
Identities = 67/164 (40%), Positives = 102/164 (62%)
Query: 176 ETERARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAF 235
E ++ +LFLH+IP VPS+ELHGV+ GDFT++ K KR +G Y A F+SP+EAN+AF
Sbjct: 465 EADKTKLFLHKIPHDVPSQELHGVLNGDFTLDVKPPKR-KGGYYNAVVDFNSPEEANEAF 523
Query: 236 ENVKGNQSKDSYGRPQKLVEFQSNAGIIASLYVRKMVCDEPSNQIVVKKRTFEGEENAGV 295
ENV+G+ KD G PQK+V F+ ++G SLYVRKMV D+ +I KR E N
Sbjct: 524 ENVEGDVVKDKTGLPQKMVVFKLSSGSGVSLYVRKMVHDDSPGEISTTKRARTEESNMS- 582
Query: 296 SKKHNIKWINEEEKIADTNQCKCEDHLKVIERLKRELREKDFQI 339
SK+ + +EE K A+ Q + + ++ ++ + ++ ++
Sbjct: 583 SKRQKTEDESEETKEANAKQREADKTKLLLHKIPLNVPSQELKV 626
>TAIR|locus:2169717 [details] [associations]
symbol:SDN2 "small RNA degrading nuclease 2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003676 GO:GO:0004527 GO:GO:0090305 eggNOG:COG0847
InterPro:IPR013520 SUPFAM:SSF53098 EMBL:AB005241 KO:K14570
HOGENOM:HOG000083886 EMBL:BT009685 EMBL:AK118437 IPI:IPI00548498
IPI:IPI00892313 RefSeq:NP_001119175.1 RefSeq:NP_196173.1
UniGene:At.43773 ProteinModelPortal:Q9FFG1 SMR:Q9FFG1 IntAct:Q9FFG1
PaxDb:Q9FFG1 PRIDE:Q9FFG1 EnsemblPlants:AT5G05540.1 GeneID:830437
KEGG:ath:AT5G05540 TAIR:At5g05540 InParanoid:Q9FFG1 OMA:QAFENIA
PhylomeDB:Q9FFG1 ProtClustDB:CLSN2686647 Genevestigator:Q9FFG1
Uniprot:Q9FFG1
Length = 466
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 165/334 (49%), Positives = 214/334 (64%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
M A+DCEMVLCEDGSE +VR+ VDR+LKV +DE VKP + V DYR+ ITGLTA DL
Sbjct: 142 MIAIDCEMVLCEDGSEAVVRVAAVDRDLKVILDEFVKPNQPVVDYRTFITGLTAQDLEKA 201
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKY-VDEYRRP--- 121
T S+ +IQ+++ +S TILVG SLN+DL+VLK+DH RVIDTSL+FKY D RRP
Sbjct: 202 TISVVDIQEKLLMFISEDTILVGQSLNHDLKVLKVDHARVIDTSLVFKYNYDGTRRPLRL 261
Query: 122 ---SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETE 178
SL LCK +LGYE++K+G PHNC+ DA AAMKLVLAI++ + +VPL +E + E E
Sbjct: 262 KRPSLNYLCKCILGYEVQKEGVPHNCVHDAEAAMKLVLAILDNGAETSVPLSKE-MLEAE 320
Query: 179 RARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENV 238
+++L+LHRIP VP EEL+GV+ D E K K+ Y+A +F SP+EANQAFEN+
Sbjct: 321 KSKLYLHRIPCNVPYEELNGVVSRDIPHEVKPSKKQDRHYYSAIVVFKSPEEANQAFENI 380
Query: 239 KGNQSKDSYGRPQKLVEFQSNAGIIASLYV--RKMVCDEPSNQIVVKKRTFEGEENAGVS 296
G+ KDS G QK + F + LYV RKMV D+ +++ EEN S
Sbjct: 381 AGDFGKDSRGLSQKQI-FLEPSSSEPRLYVLVRKMVEDDLVGEVIA-------EENNASS 432
Query: 297 KKHNIKWINEEEKIADTNQCKCEDHLKVIERLKR 330
KK K N + D +CK K +KR
Sbjct: 433 KKR--KRENHSKGTRDRRRCKPLSRRKQRSNVKR 464
>TAIR|locus:2083153 [details] [associations]
symbol:AT3G50090 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003676 GO:GO:0004527 GO:GO:0090305 eggNOG:COG0847
InterPro:IPR013520 SUPFAM:SSF53098 EMBL:AL132978 KO:K14570
HOGENOM:HOG000083886 IPI:IPI00524773 PIR:T45862 RefSeq:NP_190578.1
UniGene:At.53865 ProteinModelPortal:Q9SN09 SMR:Q9SN09
EnsemblPlants:AT3G50090.1 GeneID:824171 KEGG:ath:AT3G50090
TAIR:At3g50090 InParanoid:Q9SN09 OMA:FLHRIPH PhylomeDB:Q9SN09
ProtClustDB:CLSN2914751 Genevestigator:Q9SN09 Uniprot:Q9SN09
Length = 322
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 141/276 (51%), Positives = 180/276 (65%)
Query: 1 MTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTAD 60
M N M A+DCEMVLCEDG+EG+VR+ VDRNLKV +DE VKP K V DYR+ ITG+TA+
Sbjct: 70 MIPNQMLALDCEMVLCEDGTEGVVRVGAVDRNLKVILDEFVKPHKPVVDYRTAITGVTAE 129
Query: 61 DLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVD--EY 118
D+ T SL +IQ++++ LS G IL+ DHP VIDTSL+FKY + +
Sbjct: 130 DVQKATLSLVDIQEKLRPFLSAGAILI-------------DHPIVIDTSLVFKYPNSRKL 176
Query: 119 RRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETE 178
RRPSL LC SVLGYE++K G H+C+ DA+AAMKL LA+I++RVD + L +E E
Sbjct: 177 RRPSLNTLCMSVLGYEVQKAGVSHHCVHDAAAAMKLALAVIKKRVDTTITLTKE----AE 232
Query: 179 RARLFLHRIPTKVPSEELHGVI-----PGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQ 233
++RLFLHRIP + SEEL + P +FTI+ K K +G Y A IF S EANQ
Sbjct: 233 KSRLFLHRIPHHLSSEELKKDLALKFFPKNFTIDVKPAKT-QGGYYCAVVIFGSSVEANQ 291
Query: 234 AFENVKGNQSKDSYGRPQKLVEFQSNAGIIASLYVR 269
AFENV G + DS G PQKL+ I++ YVR
Sbjct: 292 AFENVNGYKETDSSGLPQKLISCS-----ISTFYVR 322
>TAIR|locus:2145244 [details] [associations]
symbol:AT5G25800 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR006055 InterPro:IPR012337
InterPro:IPR017849 SMART:SM00479 Pfam:PF00929 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003676 GO:GO:0004527
GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
Gene3D:3.40.720.10 EMBL:AC005405 KO:K14570 EMBL:AY128370
IPI:IPI00537859 IPI:IPI00915141 RefSeq:NP_197952.2 UniGene:At.30891
ProteinModelPortal:Q8L7M4 SMR:Q8L7M4 PaxDb:Q8L7M4 PRIDE:Q8L7M4
EnsemblPlants:AT5G25800.1 GeneID:832649 KEGG:ath:AT5G25800
TAIR:At5g25800 HOGENOM:HOG000244006 OMA:KETILVG PhylomeDB:Q8L7M4
ProtClustDB:CLSN2681069 Genevestigator:Q8L7M4 Uniprot:Q8L7M4
Length = 567
Score = 296 (109.3 bits), Expect = 1.6e-25, P = 1.6e-25
Identities = 104/359 (28%), Positives = 174/359 (48%)
Query: 8 AVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTC 67
A+DCEM + ++G E L R+ +VD +V +D+LV P + DY + +G+TA + GVT
Sbjct: 217 ALDCEMCITKEGLE-LTRVTLVDIQGQVLLDKLVMPTNPITDYNTRYSGITAVMMEGVTT 275
Query: 68 SLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVD-EYRRPSLYNL 126
+L +IQ+ KL+ TILVGHSL NDL LK+ H VIDT++++K+ + L L
Sbjct: 276 TLKDIQEEFLKLVFKETILVGHSLENDLLSLKISHNLVIDTAVLYKHPHGRSYKTKLRIL 335
Query: 127 CKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETERARLFLHR 186
K L EI++ + H+ +DA AAM L L I+ D P E R +L
Sbjct: 336 AKKFLAREIQESESGHDSAEDAKAAMDLALLKIKHGPDFGSP------PEVIRKKL---- 385
Query: 187 IPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDS 246
+ S + +I VKR ++ A + S + ++A + VK +S+
Sbjct: 386 LAVLNESGKTTSIIDN-----INIVKRYASESSNAIPVSSDDEALSKAVKEVKNKRSQFV 440
Query: 247 YGRPQKL-VEFQSNAGIIASLYVRKMVCDEPSNQIVVKKRTFEGEENAGVSKKHNIKWIN 305
+ + +L FQS A L R E + + K++ + N K +K +N
Sbjct: 441 WTQFSELNAHFQSRADDPQKLNSRLA---EMISLLTCNKKSGLKKSNVSPETKEILKKMN 497
Query: 306 EEEK----IADTNQC--KCEDH--LKVIERLKRELREKDFQISM-QDKNISDLKKKVAE 355
E + TN C H ++ R+++ L+++D +I ++K + L++ A+
Sbjct: 498 ERVQSLYAALPTNAMFIVCTGHGDTSIVHRVRKMLKDED-EIGFDREKLVKVLEELQAQ 555
>UNIPROTKB|E1BR93 [details] [associations]
symbol:LOC427001 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00479 Pfam:PF00929 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00630000089807
EMBL:AADN02064630 EMBL:AADN02064631 EMBL:AADN02064632
EMBL:AADN02064633 EMBL:AADN02064634 IPI:IPI00915205
ProteinModelPortal:E1BR93 Ensembl:ENSGALT00000039112
ArrayExpress:E1BR93 Uniprot:E1BR93
Length = 755
Score = 292 (107.8 bits), Expect = 9.1e-25, P = 9.1e-25
Identities = 71/178 (39%), Positives = 109/178 (61%)
Query: 3 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL 62
S+ ++ +DCEM L G+E +VR+ +VD + ++ELVKPE + +Y + +G+T L
Sbjct: 219 SSPLFGLDCEMCLTARGNE-VVRVSLVDAEGQCLLNELVKPESVIVNYCTRYSGVTRKML 277
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPS 122
+ V L +IQ R+KK+L + +LVGHSLN DL+ L++ HP VIDTSL+F +E RR
Sbjct: 278 LPVKTRLPDIQTRLKKILPHDAVLVGHSLNADLQALQMIHPSVIDTSLLFAR-NEGRRFK 336
Query: 123 LYNLCKSVLGYEIR-KKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETER 179
L L K+VLG EI+ ++ H+ +DA AA++L I++ L E + ER
Sbjct: 337 LKFLAKAVLGKEIQCEQRLGHDPAEDARAALELAQFFIKKGPVKVAELNLEMLLAAER 394
>UNIPROTKB|F1P5D1 [details] [associations]
symbol:LOC427001 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00479 Pfam:PF00929 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00630000089807
EMBL:AADN02064630 EMBL:AADN02064631 EMBL:AADN02064632
EMBL:AADN02064633 EMBL:AADN02064634 IPI:IPI00601052
Ensembl:ENSGALT00000003504 ArrayExpress:F1P5D1 Uniprot:F1P5D1
Length = 773
Score = 292 (107.8 bits), Expect = 9.5e-25, P = 9.5e-25
Identities = 71/178 (39%), Positives = 109/178 (61%)
Query: 3 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL 62
S+ ++ +DCEM L G+E +VR+ +VD + ++ELVKPE + +Y + +G+T L
Sbjct: 219 SSPLFGLDCEMCLTARGNE-VVRVSLVDAEGQCLLNELVKPESVIVNYCTRYSGVTRKML 277
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPS 122
+ V L +IQ R+KK+L + +LVGHSLN DL+ L++ HP VIDTSL+F +E RR
Sbjct: 278 LPVKTRLPDIQTRLKKILPHDAVLVGHSLNADLQALQMIHPSVIDTSLLFAR-NEGRRFK 336
Query: 123 LYNLCKSVLGYEIR-KKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETER 179
L L K+VLG EI+ ++ H+ +DA AA++L I++ L E + ER
Sbjct: 337 LKFLAKAVLGKEIQCEQRLGHDPAEDARAALELAQFFIKKGPVKVAELNLEMLLAAER 394
>POMBASE|SPAC637.09 [details] [associations]
symbol:SPAC637.09 "ribonuclease H70 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000467
"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=ISO] [GO:0034415 "tRNA 3'-trailer cleavage,
exonucleolytic" evidence=ISO] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=ISO] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 PomBase:SPAC637.09 Pfam:PF00929 GO:GO:0005634
EMBL:CU329670 GO:GO:0003676 eggNOG:COG0847 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0000467 GO:GO:0034476
OrthoDB:EOG4MKRQF GO:GO:0034415 PIR:T39001 RefSeq:NP_594627.2
STRING:O94443 EnsemblFungi:SPAC637.09.1 GeneID:2543505
HOGENOM:HOG000165759 NextBio:20804515 Uniprot:O94443
Length = 631
Score = 288 (106.4 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 63/150 (42%), Positives = 92/150 (61%)
Query: 8 AVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTC 67
A+DCEMV E+G E + R+ +VD +V DE VKPE V DY ++ +G+T + L VT
Sbjct: 278 AIDCEMVRTENGLE-IARVTIVDMKSEVIYDEFVKPESPVTDYVTQYSGITEEKLRNVTT 336
Query: 68 SLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV-DEYRRPSLYNL 126
L+++Q +KK + N T+L+GHSLN+DL LK HP +IDT+ I+ + +PSL L
Sbjct: 337 VLSDVQSYLKKTVDNNTVLLGHSLNSDLNCLKFTHPHIIDTANIYNHTRGPPSKPSLKWL 396
Query: 127 CKSVLGYEIRKKGT-PHNCLDDASAAMKLV 155
L EI+K G H+ +DA A + L+
Sbjct: 397 ATKWLRREIQKAGALGHDSAEDALACVDLL 426
>ASPGD|ASPL0000067196 [details] [associations]
symbol:AN7566 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003676 GO:GO:0005622 EMBL:AACD01000129 EMBL:BN001304
GO:GO:0004527 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
KO:K14570 OrthoDB:EOG4MKRQF HOGENOM:HOG000165759 RefSeq:XP_680835.1
ProteinModelPortal:Q5AVW4 EnsemblFungi:CADANIAT00000673
GeneID:2869567 KEGG:ani:AN7566.2 OMA:WARMREL Uniprot:Q5AVW4
Length = 723
Score = 285 (105.4 bits), Expect = 4.7e-24, P = 4.7e-24
Identities = 84/243 (34%), Positives = 131/243 (53%)
Query: 8 AVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTC 67
A+DCEM + E GS L R+ +V + +V +DELVKP V DY + +G+T + L VT
Sbjct: 347 ALDCEMCITEGGSSELTRISLVRWDGEVVLDELVKPRLPVIDYLTRFSGITKEMLDPVTT 406
Query: 68 SLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV-DEYRRPSLYNL 126
+L +IQ+++ +++ +ILVGHSLN+DL LKL HP ++DT ++ + R SL L
Sbjct: 407 TLRDIQQKLLNIITPRSILVGHSLNSDLNALKLTHPFIVDTVFLYPHPRGPPLRASLKWL 466
Query: 127 CKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVA-ETERARLFLH 185
+ LG EI+K T H+ ++DA A VL +++++ + D + E+ RL H
Sbjct: 467 TQKYLGKEIQKGTTGHDSIEDARA----VLELVKQKCEKGEQWGTSDASNESIFKRLSRH 522
Query: 186 RIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEAN-QAFEN-VKGNQS 243
P K P+ G ++ +R G A AI S EA + + V G++S
Sbjct: 523 SAPGK-PNVAAGGTGRTGAVVDWGNPERGLGAQ-ATVAIGCSDDEAVVKGIQAAVNGDES 580
Query: 244 KDS 246
K S
Sbjct: 581 KPS 583
>DICTYBASE|DDB_G0291590 [details] [associations]
symbol:rexo1 "RNA exonuclease 1" species:44689
"Dictyostelium discoideum" [GO:0005622 "intracellular"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IC] [GO:0008408 "3'-5' exonuclease
activity" evidence=ISS] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 dictyBase:DDB_G0291590 Pfam:PF00929 EMBL:AAFI02000177
GenomeReviews:CM000155_GR GO:GO:0003676 GO:GO:0005622
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0016070
GO:GO:0008408 KO:K14570 RefSeq:XP_635319.1
ProteinModelPortal:Q54EC1 EnsemblProtists:DDB0305007 GeneID:8628263
KEGG:ddi:DDB_G0291590 InParanoid:Q54EC1 OMA:EMLAIDC Uniprot:Q54EC1
Length = 694
Score = 277 (102.6 bits), Expect = 3.1e-23, P = 3.1e-23
Identities = 63/159 (39%), Positives = 96/159 (60%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
M A+DCEM E G L R+ +V+ KV ++ELV PEK + DY ++ +G+TAD L V
Sbjct: 328 MLAIDCEMCRTEGGQLELTRISIVNEQKKVVLNELVLPEKPIIDYLTQYSGITADTLKNV 387
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYN 125
T L++I +++KL+ T+L+GHSL NDL+ +K H ++IDTS+++ + SL
Sbjct: 388 TNRLSDIHAKLEKLVGVDTVLIGHSLENDLKAMKFIHRKIIDTSILYP-TGSSGKFSLKY 446
Query: 126 LCKSVLGYEIR--KKGT-PHNCLDDASAAMKLVLAIIER 161
L K L I+ K G H+ ++DA AAM L I++
Sbjct: 447 LTKKYLNRIIQSTKHGKLGHDSIEDARAAMDLAQLKIQK 485
>SGD|S000003508 [details] [associations]
symbol:RNH70 "3'-5' exoribonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0034415 "tRNA 3'-trailer cleavage, exonucleolytic"
evidence=IGI;IMP] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IGI] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IGI] [GO:0002107
"generation of mature 3'-end of 5S rRNA generated by RNA polymerase
III" evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 SGD:S000003508 Pfam:PF00929
GO:GO:0005634 EMBL:BK006941 GO:GO:0003723 eggNOG:COG0847
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0000175 EMBL:Z73062
GO:GO:0000467 EMBL:X84098 KO:K14570 GO:GO:0034476
GeneTree:ENSGT00630000089807 EMBL:Z73061 PIR:S64609
RefSeq:NP_011792.1 ProteinModelPortal:P53331 SMR:P53331
DIP:DIP-5564N IntAct:P53331 MINT:MINT-551078 STRING:P53331
PaxDb:P53331 PeptideAtlas:P53331 EnsemblFungi:YGR276C GeneID:853193
KEGG:sce:YGR276C CYGD:YGR276c HOGENOM:HOG000065977
OrthoDB:EOG4MKRQF NextBio:973350 Genevestigator:P53331
GermOnline:YGR276C GO:GO:0002107 GO:GO:0034415 Uniprot:P53331
Length = 553
Score = 270 (100.1 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 62/152 (40%), Positives = 99/152 (65%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL-VG 64
++A+DCEM L E G L R+ +V+ + +V +ELVKP+ + DY + +G+T + L VG
Sbjct: 225 IFALDCEMCLSEQGLV-LTRISLVNFDNEVIYEELVKPDVPIVDYLTRYSGITEEKLTVG 283
Query: 65 VTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIF--KYVDEYRRPS 122
+L E+QK + K++S IL+GHSL NDL+V+KL HP V+DT++I+ K D ++ PS
Sbjct: 284 AKKTLREVQKDLLKIISRSDILIGHSLQNDLKVMKLKHPLVVDTAIIYHHKAGDPFK-PS 342
Query: 123 LYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
L L ++ L I+ G H+ ++DA A ++L
Sbjct: 343 LKYLSETFLNKSIQN-GE-HDSVEDARACLEL 372
>UNIPROTKB|Q8IX06 [details] [associations]
symbol:REXO1L1 "Exonuclease GOR" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 GO:GO:0004527
GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
HOGENOM:HOG000112759 HOVERGEN:HBG107960 OrthoDB:EOG4PZJ5X
EMBL:AC093331 EMBL:AF495523 EMBL:AF023669 IPI:IPI00892939
RefSeq:NP_758439.4 UniGene:Hs.373854 ProteinModelPortal:Q8IX06
SMR:Q8IX06 STRING:Q8IX06 PhosphoSite:Q8IX06 DMDM:205831276
PaxDb:Q8IX06 PRIDE:Q8IX06 DNASU:254958 Ensembl:ENST00000379010
GeneID:254958 KEGG:hsa:254958 UCSC:uc022axf.1 CTD:254958
GeneCards:GC08M086568 H-InvDB:HIX0034285 H-InvDB:HIX0168820
H-InvDB:HIX0188684 H-InvDB:HIX0188686 H-InvDB:HIX0188687
H-InvDB:HIX0188688 H-InvDB:HIX0188689 H-InvDB:HIX0188690
HGNC:HGNC:24660 neXtProt:NX_Q8IX06 PharmGKB:PA142671078
InParanoid:Q8IX06 KO:K14570 OMA:RIARIPM GenomeRNAi:254958
NextBio:92431 Bgee:Q8IX06 CleanEx:HS_REXO1L1 Genevestigator:Q8IX06
Uniprot:Q8IX06
Length = 675
Score = 269 (99.8 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 61/159 (38%), Positives = 93/159 (58%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
+YA+DCEM G E L R+ VVD +++V D VKP+ + DY + +G+T D+
Sbjct: 501 IYALDCEMCYTTHGLE-LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 559
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFK-YVD-EYRRPSL 123
+ +L ++Q + S TIL+GHSL +DL LKL H V+DT+++F Y+ Y+R SL
Sbjct: 560 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKR-SL 618
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERR 162
NL L I+ HN +DASA ++LV+ + +R
Sbjct: 619 RNLAADYLAQIIQDSQDGHNSSEDASACLQLVMWKVRQR 657
>WB|WBGene00015462 [details] [associations]
symbol:C05C8.5 species:6239 "Caenorhabditis elegans"
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
KO:K14570 GeneTree:ENSGT00630000089807 EMBL:FO080353 PIR:T31744
RefSeq:NP_504838.1 ProteinModelPortal:O16312 SMR:O16312
PaxDb:O16312 EnsemblMetazoa:C05C8.5.1 EnsemblMetazoa:C05C8.5.2
GeneID:179116 KEGG:cel:CELE_C05C8.5 UCSC:C05C8.5 CTD:179116
WormBase:C05C8.5 HOGENOM:HOG000021553 InParanoid:O16312 OMA:DAWAAMR
NextBio:903992 Uniprot:O16312
Length = 594
Score = 267 (99.0 bits), Expect = 5.2e-22, P = 5.2e-22
Identities = 61/162 (37%), Positives = 95/162 (58%)
Query: 3 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL 62
S+ M++VDCEM + + L R+ +VD +D LVKPE + DY + +G+T D +
Sbjct: 218 SSPMFSVDCEMCETDVANRELTRISIVDEFENTILDTLVKPEGRITDYVTRWSGITPDMM 277
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVD---EYR 119
GVT +L ++QK ++ LL ILVGHSL +DL+ +K+ HP +D + Y + E+R
Sbjct: 278 EGVTTTLGDVQKAIQSLLPPDAILVGHSLEHDLQAMKMTHPFCLDVGHVLNYTNSNTEFR 337
Query: 120 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIER 161
SL NL + LG +I+ + H +DA AAM+L +E+
Sbjct: 338 N-SLKNLTELFLGAQIQSE-FGHCSYEDAWAAMRLAQLKLEK 377
>UNIPROTKB|A0PJM3 [details] [associations]
symbol:REXO1L2P "Putative exonuclease GOR-like protein"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 GO:GO:0090305 eggNOG:COG0847
InterPro:IPR013520 SUPFAM:SSF53098 EMBL:AF279874 IPI:IPI00937866
UniGene:Hs.535056 ProteinModelPortal:A0PJM3 SMR:A0PJM3 PRIDE:A0PJM3
UCSC:uc010mgi.2 GeneCards:GC08M086790 HGNC:HGNC:32239
neXtProt:NX_A0PJM3 HOGENOM:HOG000112759 HOVERGEN:HBG107960
InParanoid:A0PJM3 OrthoDB:EOG4PZJ5X ArrayExpress:A0PJM3
Genevestigator:A0PJM3 Uniprot:A0PJM3
Length = 583
Score = 266 (98.7 bits), Expect = 9.6e-22, P = 9.6e-22
Identities = 60/159 (37%), Positives = 93/159 (58%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
+YA+DCEM G E L R+ VVD +++V D VKP+ + DY + +G+T D+
Sbjct: 409 IYALDCEMCYTTHGLE-LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 467
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFK-YVD-EYRRPSL 123
+ +L ++Q + S TIL+GHSL +DL LKL H V+DT+++F Y+ Y+R SL
Sbjct: 468 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKR-SL 526
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERR 162
NL L I+ HN +DA+A ++LV+ + +R
Sbjct: 527 RNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQR 565
>UNIPROTKB|F5GW92 [details] [associations]
symbol:REXO1L10P "Protein REXO1L10P" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 IPI:IPI00937866
HGNC:HGNC:32239 KO:K14570 EMBL:AC232323 RefSeq:XP_002342903.1
Ensembl:ENST00000425429 Ensembl:ENST00000540724 GeneID:100288562
KEGG:hsa:100288562 OMA:VIHCTVV NextBio:20778309 Uniprot:F5GW92
Length = 675
Score = 266 (98.7 bits), Expect = 1.4e-21, P = 1.4e-21
Identities = 60/159 (37%), Positives = 93/159 (58%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
+YA+DCEM G E L R+ VVD +++V D VKP+ + DY + +G+T D+
Sbjct: 501 IYALDCEMCYTTHGLE-LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 559
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFK-YVD-EYRRPSL 123
+ +L ++Q + S TIL+GHSL +DL LKL H V+DT+++F Y+ Y+R SL
Sbjct: 560 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKR-SL 618
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERR 162
NL L I+ HN +DA+A ++LV+ + +R
Sbjct: 619 RNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQR 657
>CGD|CAL0006149 [details] [associations]
symbol:orf19.6195 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=IEA] [GO:0034415 "tRNA 3'-trailer cleavage,
exonucleolytic" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=IEA] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0002107 "generation of mature 3'-end of 5S rRNA generated by
RNA polymerase III" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 CGD:CAL0006149 Pfam:PF00929
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 eggNOG:COG0847
InterPro:IPR013520 SUPFAM:SSF53098 EMBL:AACQ01000038
EMBL:AACQ01000037 KO:K14570 RefSeq:XP_718702.1 RefSeq:XP_718786.1
ProteinModelPortal:Q5AAW5 GeneID:3639488 GeneID:3639626
KEGG:cal:CaO19.13575 KEGG:cal:CaO19.6195 Uniprot:Q5AAW5
Length = 744
Score = 264 (98.0 bits), Expect = 5.4e-21, P = 5.4e-21
Identities = 60/164 (36%), Positives = 103/164 (62%)
Query: 6 MYAVDCEMVLCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVG 64
+YA+DCE C+ G++ L R+ ++D KV +DELVKP++ + DY ++ +G+T + L
Sbjct: 338 IYALDCEF--CKAGAKQVLTRISLLDFEAKVVMDELVKPKEEITDYVTKYSGITEELLRD 395
Query: 65 VTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV-DEYRRPSL 123
VT ++ +IQ +S IL+GHSL +DL V+K+ H ++DTS+I+++ +PSL
Sbjct: 396 VTTTIEDIQNLFVNTVSQQDILIGHSLESDLNVMKIKHDNIVDTSIIYEHNRGPPSKPSL 455
Query: 124 YNLCKSVLGYEIRK---KGTPHNCLDDASAAMKLV-LAIIERRV 163
+L + L +I+ +G H+ ++DA A + LV L IIE ++
Sbjct: 456 KSLAEKHLNRQIQAGEGQGLGHSSIEDAKACLDLVKLKIIEGKL 499
>ZFIN|ZDB-GENE-030131-1650 [details] [associations]
symbol:rexo1 "REX1, RNA exonuclease 1 homolog (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
ZFIN:ZDB-GENE-030131-1650 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 KO:K14570
GeneTree:ENSGT00630000089807 CTD:57455 HOGENOM:HOG000039979
HOVERGEN:HBG090644 OMA:GGWETSY EMBL:BX511253 IPI:IPI00896271
RefSeq:NP_001119888.1 UniGene:Dr.64589 Ensembl:ENSDART00000079618
GeneID:564551 KEGG:dre:564551 NextBio:20885442 Uniprot:B0S6F3
Length = 1207
Score = 264 (98.0 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 61/153 (39%), Positives = 90/153 (58%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
+YA+DCEM + G E L R+ V++ LKV D VKP V DY + +G+TADDL
Sbjct: 1046 VYALDCEMCYTKQGLE-LTRVTVINSELKVVYDTFVKPGSRVVDYNTRFSGVTADDLENT 1104
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVD--EYRRPSL 123
T SL ++Q + + S +IL+GHSL +DL LKL H V+DT+++F + Y+R +L
Sbjct: 1105 TISLRDVQAVLLSMFSADSILIGHSLESDLFALKLIHSMVVDTAIVFPHRLGLPYKR-AL 1163
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 156
NL L I+ H+ +DA A M+L++
Sbjct: 1164 RNLMADYLKRIIQDNVGGHDSSEDARACMELMI 1196
>UNIPROTKB|Q2T9U5 [details] [associations]
symbol:Q2T9U5 "Putative RNA exonuclease NEF-sp"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00479 Pfam:PF00929 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0004527
GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
KO:K14570 GeneTree:ENSGT00630000089807 EMBL:BC111262
IPI:IPI00691015 RefSeq:NP_001033243.1 UniGene:Bt.53153
ProteinModelPortal:Q2T9U5 PRIDE:Q2T9U5 Ensembl:ENSBTAT00000008458
GeneID:532864 KEGG:bta:532864 HOGENOM:HOG000015091
HOVERGEN:HBG101031 InParanoid:Q2T9U5 OMA:KMIHPYV NextBio:20875829
ArrayExpress:Q2T9U5 Uniprot:Q2T9U5
Length = 783
Score = 259 (96.2 bits), Expect = 4.1e-20, P = 4.1e-20
Identities = 64/157 (40%), Positives = 92/157 (58%)
Query: 1 MTSNI-MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTA 59
+T N ++ +DCEM L G E L R+ +V +DELVKP+ + DY + +G+T
Sbjct: 224 VTDNSPLFGLDCEMCLTSKGRE-LTRISLVAEGGGCVMDELVKPDNKIVDYLTSFSGITK 282
Query: 60 DDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEY- 118
L VT L ++Q+R+K LL +LVGHSL+ DL LK+ HP VIDTSL+ YV E
Sbjct: 283 KILNPVTTKLKDVQRRLKILLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLL--YVREQG 340
Query: 119 RRPSLYNLCKSVLGYEIR-KKGTPHNCLDDASAAMKL 154
RR L L K++LG +I+ H+ +DA ++L
Sbjct: 341 RRFKLKFLAKAILGKDIQCPDRLGHDATEDARTTLEL 377
>UNIPROTKB|F1SDH3 [details] [associations]
symbol:LOC100525449 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 KO:K14570
GeneTree:ENSGT00630000089807 OMA:VAYDRSP EMBL:FP236669
EMBL:FP102751 RefSeq:XP_003123050.1 RefSeq:XP_003123064.2
UniGene:Ssc.70280 Ensembl:ENSSSCT00000014685
Ensembl:ENSSSCT00000014691 GeneID:100513338 GeneID:100525449
KEGG:ssc:100513338 KEGG:ssc:100525449 Uniprot:F1SDH3
Length = 1211
Score = 261 (96.9 bits), Expect = 4.2e-20, P = 4.2e-20
Identities = 61/153 (39%), Positives = 90/153 (58%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
+YA+DCEM G E L R+ VVD +L+V D V+P+ + DY + +G+T DL
Sbjct: 1050 IYALDCEMSYTTYGLE-LTRVTVVDTDLQVVYDTFVRPDNEIVDYNTRFSGVTEADLADT 1108
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVD--EYRRPSL 123
+ SL ++Q + + S+ TIL+GHSL +DL LK+ H V+DTS++F + Y+R SL
Sbjct: 1109 SISLRDVQAVLLSMFSSDTILIGHSLESDLLALKVIHSTVVDTSVLFPHRLGLPYKR-SL 1167
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 156
NL L I+ H+ +DASA M LV+
Sbjct: 1168 RNLMADYLRQIIQDNVDGHSSSEDASACMHLVI 1200
>FB|FBgn0035707 [details] [associations]
symbol:CG8368 species:7227 "Drosophila melanogaster"
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 EMBL:AE014296 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
KO:K14570 GeneTree:ENSGT00630000089807 EMBL:BT023775
RefSeq:NP_648050.1 RefSeq:NP_729177.1 UniGene:Dm.30144 SMR:Q9VRX7
IntAct:Q9VRX7 MINT:MINT-298361 EnsemblMetazoa:FBtr0076976
EnsemblMetazoa:FBtr0076977 GeneID:38740 KEGG:dme:Dmel_CG8368
UCSC:CG8368-RA FlyBase:FBgn0035707 InParanoid:Q9VRX7 OMA:DKFPRTK
OrthoDB:EOG49P8DJ GenomeRNAi:38740 NextBio:810128 Uniprot:Q9VRX7
Length = 681
Score = 257 (95.5 bits), Expect = 6.4e-20, P = 6.4e-20
Identities = 58/151 (38%), Positives = 88/151 (58%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
M+ VDCEM E G L R+ +V+ N + + LV P + DY ++ +G+TA+ + V
Sbjct: 356 MFGVDCEMCHTEAGCNELTRISIVNENYETVYETLVLPNNRITDYLTQYSGITAEIMEQV 415
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPS-LY 124
T L +QK + +LL ILVG SLN+DL +K+ HP VIDTS+ F RR + L
Sbjct: 416 TKRLDVVQKEVSELLPPDAILVGQSLNSDLNAMKMMHPYVIDTSVCFNTSGVRRRKTKLK 475
Query: 125 NLCKSVLGYEIRKKGTPHNCLDDASAAMKLV 155
+L K+ L I++ H+ ++D+ A +KLV
Sbjct: 476 DLAKTFLQEIIQENIDGHDSIEDSRATLKLV 506
>FB|FBgn0036405 [details] [associations]
symbol:CG6833 species:7227 "Drosophila melanogaster"
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 EMBL:AE014296 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 EMBL:AY060760 RefSeq:NP_001189105.1
RefSeq:NP_648689.1 UniGene:Dm.3871 SMR:Q9VUC3 IntAct:Q9VUC3
STRING:Q9VUC3 EnsemblMetazoa:FBtr0075774 EnsemblMetazoa:FBtr0302433
GeneID:39559 KEGG:dme:Dmel_CG6833 UCSC:CG6833-RA
FlyBase:FBgn0036405 InParanoid:Q9VUC3 OMA:GQEIQTG OrthoDB:EOG4PK0R4
GenomeRNAi:39559 NextBio:814273 Uniprot:Q9VUC3
Length = 290
Score = 236 (88.1 bits), Expect = 9.5e-20, P = 9.5e-20
Identities = 63/156 (40%), Positives = 88/156 (56%)
Query: 4 NIMYAVDCEMVLCEDGSEG--LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 61
N + A+DCEMV + L R+ +V+R V +D+ VKP K V DYR+ ++G+ D
Sbjct: 115 NRILAMDCEMVGVGHNTRDDMLARVSIVNRMGHVLLDKYVKPRKEVTDYRTSVSGIRPQD 174
Query: 62 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSL---IFKYVD 116
+ A +Q + KL+ +G ILVGH L NDL VL + HP + DTS + K +
Sbjct: 175 IANGE-DFAAVQNEVMKLI-HGRILVGHGLRNDLAVLGIRHPFHDIRDTSHYKPLCKLIS 232
Query: 117 EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAM 152
PSL L K+VLG EI+ G HN ++DA AAM
Sbjct: 233 NTHTPSLKRLTKAVLGQEIQT-GE-HNSVEDARAAM 266
>UNIPROTKB|E2RFH4 [details] [associations]
symbol:LOC479820 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00479 Pfam:PF00929 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00630000089807
EMBL:AAEX03004472 Ensembl:ENSCAFT00000028470 Uniprot:E2RFH4
Length = 733
Score = 256 (95.2 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 62/157 (39%), Positives = 92/157 (58%)
Query: 1 MTSNI-MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTA 59
+T N ++ +DCEM + G E L R+ +V +DELVKP+ + DY + +G+T
Sbjct: 178 ITDNSPLFGLDCEMCVTSKGRE-LTRISLVAEGGSCVMDELVKPDNKILDYLTSFSGITK 236
Query: 60 DDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEY- 118
L VT L ++Q+++K LL +LVGHSL+ DL LK+ HP VIDTSL+ YV E
Sbjct: 237 KILNPVTTRLKDVQRQLKSLLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLL--YVREQG 294
Query: 119 RRPSLYNLCKSVLGYEIR-KKGTPHNCLDDASAAMKL 154
RR L L K++LG +I+ H+ +DA ++L
Sbjct: 295 RRFKLKFLAKAILGKDIQCPNRLGHDATEDARTTLEL 331
>UNIPROTKB|E2RFH9 [details] [associations]
symbol:LOC479820 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00479 Pfam:PF00929 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00630000089807
OMA:KMIHPYV EMBL:AAEX03004472 Ensembl:ENSCAFT00000028467
Uniprot:E2RFH9
Length = 774
Score = 256 (95.2 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 62/157 (39%), Positives = 92/157 (58%)
Query: 1 MTSNI-MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTA 59
+T N ++ +DCEM + G E L R+ +V +DELVKP+ + DY + +G+T
Sbjct: 223 ITDNSPLFGLDCEMCVTSKGRE-LTRISLVAEGGSCVMDELVKPDNKILDYLTSFSGITK 281
Query: 60 DDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEY- 118
L VT L ++Q+++K LL +LVGHSL+ DL LK+ HP VIDTSL+ YV E
Sbjct: 282 KILNPVTTRLKDVQRQLKSLLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLL--YVREQG 339
Query: 119 RRPSLYNLCKSVLGYEIR-KKGTPHNCLDDASAAMKL 154
RR L L K++LG +I+ H+ +DA ++L
Sbjct: 340 RRFKLKFLAKAILGKDIQCPNRLGHDATEDARTTLEL 376
>UNIPROTKB|E2QX02 [details] [associations]
symbol:REXO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00630000089807 OMA:VAYDRSP EMBL:AAEX03012623
EMBL:AAEX03012624 Ensembl:ENSCAFT00000030942 Uniprot:E2QX02
Length = 1208
Score = 258 (95.9 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 60/153 (39%), Positives = 89/153 (58%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
+YA+DCEM G E L R+ VVD +++V D VKP+ + DY + +G+T DL
Sbjct: 1047 IYALDCEMSYTTYGLE-LTRVTVVDTDMQVVYDTFVKPDNEIVDYNTRFSGVTEADLADT 1105
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVD--EYRRPSL 123
+ SL ++Q + + S T+L+GHSL +DL LK+ H V+DTS++F + Y+R SL
Sbjct: 1106 SISLRDVQAVLLSMFSADTVLIGHSLESDLLALKVIHSTVVDTSVLFPHRLGLPYKR-SL 1164
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 156
NL L I+ H+ +DASA M LV+
Sbjct: 1165 RNLMADYLRQIIQDNVDGHSSSEDASACMHLVI 1197
>MGI|MGI:1914182 [details] [associations]
symbol:Rexo1 "REX1, RNA exonuclease 1 homolog (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 MGI:MGI:1914182
GO:GO:0005634 GO:GO:0003676 GO:GO:0004527 GO:GO:0090305
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 OrthoDB:EOG4PZJ5X
KO:K14570 GeneTree:ENSGT00630000089807 CTD:57455
HOGENOM:HOG000039979 HOVERGEN:HBG090644 OMA:VAYDRSP EMBL:AK173108
EMBL:AK006228 EMBL:AK144769 EMBL:BC039623 EMBL:BC052424
EMBL:BC069964 IPI:IPI00469996 IPI:IPI00759993 RefSeq:NP_080128.2
UniGene:Mm.1116 ProteinModelPortal:Q7TT28 SMR:Q7TT28 IntAct:Q7TT28
PhosphoSite:Q7TT28 PRIDE:Q7TT28 Ensembl:ENSMUST00000057910
GeneID:66932 KEGG:mmu:66932 UCSC:uc007gdq.1 UCSC:uc007gds.1
InParanoid:Q7TT28 NextBio:323057 Bgee:Q7TT28 CleanEx:MM_REXO1
Genevestigator:Q7TT28 GermOnline:ENSMUSG00000047417 Uniprot:Q7TT28
Length = 1213
Score = 256 (95.2 bits), Expect = 2.3e-19, P = 2.3e-19
Identities = 61/153 (39%), Positives = 90/153 (58%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
++A+DCEM G E L R+ VVD +++V D VKP+ V DY + +G+T DLV
Sbjct: 1052 VFALDCEMSYTTYGLE-LTRVTVVDTDMQVVYDTFVKPDNEVVDYNTRFSGVTEADLVDT 1110
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVD--EYRRPSL 123
+ +L ++Q + + S TIL+GHSL +DL LK+ H V+DTS++F + Y+R SL
Sbjct: 1111 SITLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHGTVVDTSVLFPHRLGLPYKR-SL 1169
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 156
NL L I+ H+ +DASA M LV+
Sbjct: 1170 RNLMADYLRQIIQDNVDGHSSSEDASACMHLVI 1202
>UNIPROTKB|G4MYV4 [details] [associations]
symbol:MGG_15523 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 EMBL:CM001232
RefSeq:XP_003713422.1 ProteinModelPortal:G4MYV4
EnsemblFungi:MGG_15523T0 GeneID:12987077 KEGG:mgr:MGG_15523
Uniprot:G4MYV4
Length = 720
Score = 253 (94.1 bits), Expect = 2.7e-19, P = 2.7e-19
Identities = 59/158 (37%), Positives = 99/158 (62%)
Query: 6 MYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 61
++A+DCEM C G L R+ ++ + +V +DELVKP + DY ++ +G+T +
Sbjct: 313 IFAIDCEM--CRTGPTNHDLSLTRVTILSWDGEVVMDELVKPSLPILDYLTQFSGITKEM 370
Query: 62 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYR-R 120
L VT +L +IQKR+ +LL+ +ILVGHSL++D++ L++ HP V+DTS++F +
Sbjct: 371 LEPVTTTLPDIQKRLLELLTPRSILVGHSLDSDMKALQMAHPFVVDTSILFPNPSSPNGK 430
Query: 121 PSLYNLCKSVLGYEIRK-KGT--PHNCLDDASAAMKLV 155
SL +L LG +++K +G+ H+ +DA A+ LV
Sbjct: 431 HSLKHLASKYLGRQVQKDEGSLKGHDSYEDALTALDLV 468
>UNIPROTKB|Q96IC2 [details] [associations]
symbol:44M2.3 "Putative RNA exonuclease NEF-sp"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00479 Pfam:PF00929 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC004381
GO:GO:0004527 GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520
SUPFAM:SSF53098 EMBL:CH471228 HOVERGEN:HBG101031 OMA:KMIHPYV
EMBL:AF332193 EMBL:AL136763 EMBL:AK057254 EMBL:AK314458
EMBL:BC007646 EMBL:BC068503 EMBL:AL162035 IPI:IPI00021754
IPI:IPI00307029 PIR:T47187 RefSeq:NP_001138396.1
RefSeq:NP_001185982.1 RefSeq:NP_112203.2 UniGene:Hs.177926
ProteinModelPortal:Q96IC2 SMR:Q96IC2 IntAct:Q96IC2
PhosphoSite:Q96IC2 DMDM:74760869 PaxDb:Q96IC2 PRIDE:Q96IC2
DNASU:81691 GeneID:81691 KEGG:hsa:81691 UCSC:uc002dhv.3
UCSC:uc002dhx.3 GeneCards:GC16P020817 HPA:HPA040755 HPA:HPA040868
neXtProt:NX_Q96IC2 InParanoid:Q96IC2 OrthoDB:EOG44F69Z
PhylomeDB:Q96IC2 GenomeRNAi:81691 NextBio:72040 Bgee:Q96IC2
Genevestigator:Q96IC2 Uniprot:Q96IC2
Length = 774
Score = 253 (94.1 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 62/151 (41%), Positives = 88/151 (58%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
++ +DCEM L G E L R+ +V +DELVKPE + DY + +G+T L V
Sbjct: 228 LFGLDCEMCLTSKGRE-LTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPV 286
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEY-RRPSLY 124
T L ++Q+++K LL +LVGHSL+ DL LK+ HP VIDTSL+ YV E RR L
Sbjct: 287 TTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLL--YVREQGRRFKLK 344
Query: 125 NLCKSVLGYEIR-KKGTPHNCLDDASAAMKL 154
L K +LG +I+ H+ +DA ++L
Sbjct: 345 FLAKVILGKDIQCPDRLGHDATEDARTILEL 375
>UNIPROTKB|E1BDF8 [details] [associations]
symbol:LOC788506 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0005634 GO:GO:0003676
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 KO:K14570
GeneTree:ENSGT00630000089807 CTD:57455 OMA:VAYDRSP
EMBL:DAAA02020285 IPI:IPI00700340 RefSeq:NP_001179237.1
UniGene:Bt.25942 Ensembl:ENSBTAT00000026945 GeneID:512048
KEGG:bta:512048 NextBio:20870228 Uniprot:E1BDF8
Length = 1211
Score = 255 (94.8 bits), Expect = 3.3e-19, P = 3.3e-19
Identities = 59/153 (38%), Positives = 90/153 (58%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
+YA+DCEM G E L R+ VVD +L+V D V+P+ + DY + +G+T DL
Sbjct: 1050 VYALDCEMSYTTYGLE-LTRVTVVDTDLQVVYDTFVRPDNEIVDYNTRFSGVTEADLADT 1108
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVD--EYRRPSL 123
+ SL ++Q + + S+ T+L+GHSL +DL L++ H V+DTS++F + Y+R SL
Sbjct: 1109 SISLRDVQAVLLSMFSSDTVLIGHSLESDLLCLQVIHSTVVDTSVLFPHRLGLPYKR-SL 1167
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 156
NL L I+ H+ +DASA M LV+
Sbjct: 1168 RNLMADYLRQIIQDNVDGHSSSEDASACMHLVI 1200
>RGD|1305412 [details] [associations]
symbol:Exnef "exonuclease NEF-sp" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00479 Pfam:PF00929 RGD:1305412 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0004527
GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
KO:K14570 HOGENOM:HOG000015091 HOVERGEN:HBG101031 OrthoDB:EOG44F69Z
EMBL:BC128775 IPI:IPI00565694 RefSeq:NP_001073174.1
UniGene:Rn.203990 ProteinModelPortal:A1A5R7 PhosphoSite:A1A5R7
PRIDE:A1A5R7 GeneID:309036 KEGG:rno:309036 UCSC:RGD:1305412
CTD:309036 InParanoid:A1A5R7 NextBio:660038 Genevestigator:A1A5R7
Uniprot:A1A5R7
Length = 754
Score = 251 (93.4 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 63/157 (40%), Positives = 96/157 (61%)
Query: 3 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL 62
S+ ++ +DCE+ L G E L R+ +V +DELVKP+ + DY + +G+T + L
Sbjct: 219 SSPLFGLDCEVCLTSMGKE-LTRISLVAEGGYCLMDELVKPDFKILDYLTSFSGITKEIL 277
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEY-RRP 121
VT L ++QK +++LL +LVGH L+ DL VLK+ HP VIDTSL+ Y+ + RR
Sbjct: 278 NPVTTKLKDVQKLLRELLPPDAVLVGHCLDLDLRVLKIIHPYVIDTSLL--YIGKQGRRF 335
Query: 122 SLYNLCKSVLGYEIR---KKGTPHNCLDDASAAMKLV 155
L L K +LG +I+ K G H+ ++DA A++LV
Sbjct: 336 KLTFLAKVILGKDIQCPNKLG--HDGIEDARTALELV 370
>UNIPROTKB|F1M6V9 [details] [associations]
symbol:Exnef "Protein Exnef" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006055 InterPro:IPR012337
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00479 Pfam:PF00929 RGD:1305412 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 GeneTree:ENSGT00630000089807 IPI:IPI00565694
Ensembl:ENSRNOT00000019654 Uniprot:F1M6V9
Length = 754
Score = 251 (93.4 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 63/157 (40%), Positives = 96/157 (61%)
Query: 3 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL 62
S+ ++ +DCE+ L G E L R+ +V +DELVKP+ + DY + +G+T + L
Sbjct: 219 SSPLFGLDCEVCLTSMGKE-LTRISLVAEGGYCLMDELVKPDFKILDYLTSFSGITKEIL 277
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEY-RRP 121
VT L ++QK +++LL +LVGH L+ DL VLK+ HP VIDTSL+ Y+ + RR
Sbjct: 278 NPVTTKLKDVQKLLRELLPPDAVLVGHCLDLDLRVLKIIHPYVIDTSLL--YIGKQGRRF 335
Query: 122 SLYNLCKSVLGYEIR---KKGTPHNCLDDASAAMKLV 155
L L K +LG +I+ K G H+ ++DA A++LV
Sbjct: 336 KLTFLAKVILGKDIQCPNKLG--HDGIEDARTALELV 370
>RGD|1564472 [details] [associations]
symbol:RGD1564472 "similar to Transcription elongation factor B
polypeptide 3 binding protein 1" species:10116 "Rattus norvegicus"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 RGD:1564472 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00630000089807
IPI:IPI00767432 Ensembl:ENSRNOT00000049320 Uniprot:F1LWS9
Length = 465
Score = 246 (91.7 bits), Expect = 7.4e-19, P = 7.4e-19
Identities = 58/152 (38%), Positives = 84/152 (55%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
+YA+DCEM G E L R+ VVD + V D VKP+ + DY + +G+T DL
Sbjct: 304 IYALDCEMSYTTHGLE-LTRVTVVDTDQHVIYDTFVKPDNEIVDYNTMFSGVTETDLANT 362
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV--DEYRRPSL 123
L ++Q + L S TIL+GHSL +DL LK H V+DTS++F + ++R SL
Sbjct: 363 RVRLCDVQAVLLSLFSTETILIGHSLESDLLALKFIHGTVVDTSVLFPHHRGPPFKR-SL 421
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLV 155
L L I+ H+ ++DA+A M+LV
Sbjct: 422 RGLTSQYLNRIIQTDSGGHSSIEDATACMQLV 453
>UNIPROTKB|Q8N1G1 [details] [associations]
symbol:REXO1 "RNA exonuclease 1 homolog" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0005634 GO:GO:0003676 GO:GO:0004527 GO:GO:0090305
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 EMBL:AC012615
OrthoDB:EOG4PZJ5X KO:K14570 EMBL:AB032964 EMBL:BC032244
IPI:IPI00297396 RefSeq:NP_065746.3 UniGene:Hs.192477
ProteinModelPortal:Q8N1G1 SMR:Q8N1G1 IntAct:Q8N1G1
MINT:MINT-1401484 STRING:Q8N1G1 PhosphoSite:Q8N1G1 DMDM:296452990
PaxDb:Q8N1G1 PRIDE:Q8N1G1 Ensembl:ENST00000170168 GeneID:57455
KEGG:hsa:57455 UCSC:uc002lua.4 CTD:57455 GeneCards:GC19M001815
H-InvDB:HIX0014594 H-InvDB:HIX0027481 HGNC:HGNC:24616 HPA:HPA042155
HPA:HPA042552 MIM:609614 neXtProt:NX_Q8N1G1 PharmGKB:PA142671077
HOGENOM:HOG000039979 HOVERGEN:HBG090644 InParanoid:Q8N1G1
OMA:VAYDRSP GenomeRNAi:57455 NextBio:63632 ArrayExpress:Q8N1G1
Bgee:Q8N1G1 CleanEx:HS_REXO1 Genevestigator:Q8N1G1
GermOnline:ENSG00000079313 Uniprot:Q8N1G1
Length = 1221
Score = 249 (92.7 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 59/153 (38%), Positives = 87/153 (56%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
+YA+DCEM G E L R+ VVD ++ V D VKP+ + DY + +G+T DL
Sbjct: 1060 IYALDCEMSYTTYGLE-LTRVTVVDTDVHVVYDTFVKPDNEIVDYNTRFSGVTEADLADT 1118
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVD--EYRRPSL 123
+ +L ++Q + + S TIL+GHSL +DL LK+ H V+DTS++F + Y+R SL
Sbjct: 1119 SVTLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHSTVVDTSVLFPHRLGLPYKR-SL 1177
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 156
NL L I+ H+ +DA A M LV+
Sbjct: 1178 RNLMADYLRQIIQDNVDGHSSSEDAGACMHLVI 1210
>UNIPROTKB|F1P0Z1 [details] [associations]
symbol:REXO1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00630000089807 OMA:VAYDRSP EMBL:AADN02066720
IPI:IPI00599868 Ensembl:ENSGALT00000001557 Uniprot:F1P0Z1
Length = 1217
Score = 246 (91.7 bits), Expect = 5.0e-18, P = 5.0e-18
Identities = 56/153 (36%), Positives = 90/153 (58%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
++A+DCEM + G E L R+ V++ +LKV D VKP+ V DY + +G+T +DL
Sbjct: 1056 IFALDCEMCYTKQGLE-LTRVTVINSDLKVVYDTFVKPDTKVVDYNTRFSGVTEEDLENT 1114
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVD--EYRRPSL 123
+ +L ++Q + + S TIL+GHSL +DL LKL H V+DT+++F + Y+R +L
Sbjct: 1115 SITLRDVQAVLLNMFSADTILIGHSLESDLFALKLIHGTVVDTAIVFPHRLGLPYKR-AL 1173
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 156
L L I+ H+ +DA A M+L++
Sbjct: 1174 RTLMADYLKRIIQDNVEGHDSSEDARACMELMI 1206
>FB|FBgn0261548 [details] [associations]
symbol:CG42666 species:7227 "Drosophila melanogaster"
[GO:0004527 "exonuclease activity" evidence=ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 EMBL:AE014298 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00630000089807 FlyBase:FBgn0261548 UniGene:Dm.19
GeneID:31136 KEGG:dme:Dmel_CG42666 GenomeRNAi:31136 NextBio:772085
EMBL:AY069617 RefSeq:NP_569945.1 SMR:Q8T023
EnsemblMetazoa:FBtr0302654 UCSC:CG14801-RB InParanoid:Q8T023
Uniprot:Q8T023
Length = 787
Score = 239 (89.2 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 59/165 (35%), Positives = 98/165 (59%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
+YA+DCEM G + + ++ +V N ++ + V+P + DY ++ +G+T DL
Sbjct: 620 VYALDCEMSYTGRGLD-VTKVSLVALNGQLVYEHFVRPVCDIIDYNTQYSGITETDLCSG 678
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVD--EYRRPSL 123
SLAE+Q+ + +L++ TIL+GH L NDL L+L H +IDTS+ F + + YRR +L
Sbjct: 679 AKSLAEVQRDLLQLITADTILIGHGLENDLRALRLVHNTLIDTSISFPHCNGFPYRR-AL 737
Query: 124 YNLCKSVLGYEIRK-KGTP-HNCLDDASAAMKLVLAIIERRVDNA 166
+L K L +I+ GT H+ +D+ A M+L+L + R +D A
Sbjct: 738 RHLTKVHLKRDIQAGDGTTGHSSFEDSRACMELMLWRVNRELDPA 782
>WB|WBGene00013244 [details] [associations]
symbol:Y56A3A.33 species:6239 "Caenorhabditis elegans"
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0006974
GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
EMBL:AL132860 KO:K14570 GeneTree:ENSGT00630000089807
RefSeq:NP_499565.1 ProteinModelPortal:Q9U220 SMR:Q9U220
EnsemblMetazoa:Y56A3A.33.1 EnsemblMetazoa:Y56A3A.33.2 GeneID:176636
KEGG:cel:CELE_Y56A3A.33 UCSC:Y56A3A.33 CTD:176636
WormBase:Y56A3A.33 HOGENOM:HOG000019974 InParanoid:Q9U220
OMA:HTLNGLE NextBio:893398 ArrayExpress:Q9U220 Uniprot:Q9U220
Length = 365
Score = 230 (86.0 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 54/157 (34%), Positives = 93/157 (59%)
Query: 3 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL 62
SN ++A+DCE+V +G E + R+ +VD KV +D P V + S +G+T D+
Sbjct: 178 SNKVFALDCELVHTLNGLE-VARVSLVDMKGKVLLDTFALPVFEVISFNSTFSGVTEKDM 236
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYR--- 119
SL + ++ +L+++ T+LVGHSL +DL+ L+L H VIDT+++F VD R
Sbjct: 237 ESAI-SLEACRLQLFQLINSETLLVGHSLESDLKALRLVHHNVIDTAVLFSIVDPSRSYI 295
Query: 120 -RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLV 155
+ SL NL K L +++ + + H+ ++D+ M+L+
Sbjct: 296 LKLSLQNLAKKYLCKDVQSEASGHSSIEDSHTCMELL 332
>UNIPROTKB|H3BQ98 [details] [associations]
symbol:LOC81691 "Protein LOC81691" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
EMBL:AC004381 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
Ensembl:ENST00000565340 Bgee:H3BQ98 Uniprot:H3BQ98
Length = 143
Score = 215 (80.7 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 52/120 (43%), Positives = 73/120 (60%)
Query: 37 IDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLE 96
+DELVKPE + DY + +G+T L VT L ++Q+++K LL +LVGHSL+ DL
Sbjct: 1 MDELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLR 60
Query: 97 VLKLDHPRVIDTSLIFKYVDEY-RRPSLYNLCKSVLGYEIR-KKGTPHNCLDDASAAMKL 154
LK+ HP VIDTSL+ YV E RR L L K +LG +I+ H+ +DA ++L
Sbjct: 61 ALKMIHPYVIDTSLL--YVREQGRRFKLKFLAKVILGKDIQCPDRLGHDATEDARTILEL 118
>ZFIN|ZDB-GENE-120215-216 [details] [associations]
symbol:si:ch73-209e20.4 "si:ch73-209e20.4"
species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
ZFIN:ZDB-GENE-120215-216 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00520000055542
KO:K01175 EMBL:FP243383 IPI:IPI00613534 RefSeq:XP_002665913.1
ProteinModelPortal:F1QJP9 Ensembl:ENSDART00000121769
GeneID:100333127 KEGG:dre:100333127 Bgee:F1QJP9 Uniprot:F1QJP9
Length = 418
Score = 232 (86.7 bits), Expect = 2.9e-17, P = 2.9e-17
Identities = 56/153 (36%), Positives = 93/153 (60%)
Query: 8 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCEMV + G + L R+ +V+ K D+ VKP + V DYR+ ++G+ DD+
Sbjct: 235 AMDCEMVGVGYKGEDSILARVSLVNHFGKCIYDKYVKPTEKVTDYRTAVSGIRPDDIKNG 294
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDEYRRP 121
+ +QK + ++L G ILVGH+++NDL++L LDHP+ + DT F+ + RP
Sbjct: 295 E-DIKTVQKEVAQILK-GRILVGHAIHNDLKILLLDHPKKMIRDTQRYKPFRQKVKSSRP 352
Query: 122 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
+L NLC+ +L ++++ G H+ + DA A M+L
Sbjct: 353 ALRNLCRQILNVQVQQ-GE-HSSVQDAQATMRL 383
>FB|FBgn0039544 [details] [associations]
symbol:CG12877 species:7227 "Drosophila melanogaster"
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 EMBL:AE014297 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
KO:K14570 GeneTree:ENSGT00630000089807 EMBL:BT133134
RefSeq:NP_001034073.1 UniGene:Dm.14943 SMR:Q2PDP6
EnsemblMetazoa:FBtr0100446 GeneID:43333 KEGG:dme:Dmel_CG12877
UCSC:CG12877-RC FlyBase:FBgn0039544 OMA:GGWETSY OrthoDB:EOG4FTTFN
GenomeRNAi:43333 NextBio:833402 Uniprot:Q2PDP6
Length = 991
Score = 237 (88.5 bits), Expect = 4.8e-17, P = 4.8e-17
Identities = 54/163 (33%), Positives = 90/163 (55%)
Query: 2 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 61
T +YA+DCEM G E L R+ VVD N + D LVKP+ + DY + +G+T
Sbjct: 829 TKKDIYALDCEMCYTTHGIE-LTRVTVVDINGRSVYDALVKPDNQIVDYNTTYSGITEAM 887
Query: 62 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKY-VDEYRR 120
L T ++ ++Q + + T+LVGHSL +DL+ LKL H V+DTS++F + + ++
Sbjct: 888 LSNETRTIRDVQAVLMSMFHAKTVLVGHSLESDLKALKLIHDVVVDTSVLFPHKMGPPKK 947
Query: 121 PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRV 163
+L LC L I++ H+ +DA ++L+ + ++
Sbjct: 948 RALKTLCIENLKRIIQESEAGHDSAEDAEVCIQLIKYYLRNKI 990
>UNIPROTKB|Q9GZR2 [details] [associations]
symbol:REXO4 "RNA exonuclease 4" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=NAS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0005730
EMBL:CH471090 GO:GO:0003700 GO:GO:0003676 GO:GO:0004527
GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
EMBL:AL158826 KO:K01175 EMBL:AF295774 EMBL:AF273304 EMBL:AL136894
EMBL:AK025493 EMBL:AK314333 EMBL:BC009274 IPI:IPI00010653
IPI:IPI00513877 RefSeq:NP_065118.2 UniGene:Hs.438409
ProteinModelPortal:Q9GZR2 SMR:Q9GZR2 IntAct:Q9GZR2 STRING:Q9GZR2
PhosphoSite:Q9GZR2 DMDM:71153418 SWISS-2DPAGE:Q9GZR2 PaxDb:Q9GZR2
PRIDE:Q9GZR2 DNASU:57109 Ensembl:ENST00000371935
Ensembl:ENST00000371942 Ensembl:ENST00000445916
Ensembl:ENST00000453165 Ensembl:ENST00000454825
Ensembl:ENST00000562216 Ensembl:ENST00000568937
Ensembl:ENST00000569763 Ensembl:ENST00000570226 GeneID:57109
KEGG:hsa:57109 UCSC:uc004cdm.3 CTD:57109 GeneCards:GC09M136271
HGNC:HGNC:12820 HPA:HPA047006 MIM:602930 neXtProt:NX_Q9GZR2
PharmGKB:PA37414 HOGENOM:HOG000231626 HOVERGEN:HBG000999
InParanoid:Q9GZR2 OMA:QKEVAEM OrthoDB:EOG4VX263 PhylomeDB:Q9GZR2
GenomeRNAi:57109 NextBio:62959 ArrayExpress:Q9GZR2 Bgee:Q9GZR2
CleanEx:HS_REXO4 Genevestigator:Q9GZR2 GermOnline:ENSG00000148300
Uniprot:Q9GZR2
Length = 422
Score = 227 (85.0 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 59/157 (37%), Positives = 94/157 (59%)
Query: 8 AVDCEMV-LCEDGSEGLV-RLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCEMV + G E + R+ +V++ K D+ VKP + V DYR+ ++G+ ++L
Sbjct: 245 ALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQG 304
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDEYRRP 121
L +QK + ++L G ILVGH+L+NDL+VL LDHP+ + DT FK + RP
Sbjct: 305 E-ELEVVQKEVAEMLK-GRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKSGRP 362
Query: 122 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAI 158
SL L + +LG ++++ H + DA AAM+L + +
Sbjct: 363 SLRLLSEKILGLQVQQ--AEHCSIQDAQAAMRLYVMV 397
>POMBASE|SPBC1604.09c [details] [associations]
symbol:SPBC1604.09c "exoribonuclease Rex4 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=ISO] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 PomBase:SPBC1604.09c Pfam:PF00929 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003676
eggNOG:COG0847 HOGENOM:HOG000182422 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006364 KO:K01175 OMA:NDIPESQ
PIR:T39505 RefSeq:NP_596631.1 ProteinModelPortal:O94375
STRING:O94375 EnsemblFungi:SPBC1604.09c.1 GeneID:2540203
KEGG:spo:SPBC1604.09c OrthoDB:EOG4TB7M4 NextBio:20801335
Uniprot:O94375
Length = 260
Score = 209 (78.6 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 54/151 (35%), Positives = 88/151 (58%)
Query: 8 AVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTC 67
A+DCEMV D L R+ +V+ + V D V+P++ V D+R+ ++G+ + +
Sbjct: 95 AMDCEMVGVADDMSVLARVSIVNYHGHVVYDTYVRPKEKVTDWRTWVSGVKSFHMRDAP- 153
Query: 68 SLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKY--VDEYRRPSL 123
S ++Q + K+L N +LVGH+++NDL+VL L HPR + DTS Y + + R P L
Sbjct: 154 SFEKVQAEVAKILDN-RVLVGHAVHNDLKVLLLSHPRRMIRDTSRFSGYRKLAKGRTPGL 212
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
L + +LG +I+ G H+ + DA A M+L
Sbjct: 213 KKLAEVILGRDIQS-GQ-HSSVQDAQATMEL 241
>UNIPROTKB|F1P8U5 [details] [associations]
symbol:F1P8U5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00630000089807 EMBL:AAEX03007922 OMA:FAVNCEV
Ensembl:ENSCAFT00000002678 Uniprot:F1P8U5
Length = 369
Score = 224 (83.9 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 53/152 (34%), Positives = 87/152 (57%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
++AV+CE+ G E L ++ VVD +L+V D VKP+ V DY + ++G+ DDL
Sbjct: 209 VFAVNCEVCYTAKGLE-LTQVTVVDPSLQVVYDTFVKPDDEVIDYNTRLSGVVEDDLKNT 267
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKY-VDEYRRPSLY 124
S+ ++Q + L S T+L+GHS + L LKL H V+DT+++F + + + SL
Sbjct: 268 KTSIRDVQAILLNLFSADTVLIGHSFEHSLYALKLIHSSVVDTTILFPHRLGLPHKRSLK 327
Query: 125 NLCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 156
+L L I + +N ++A+A M+LVL
Sbjct: 328 SLVADYL-QRIIQDDDHNNSSENATACMELVL 358
>WB|WBGene00012465 [details] [associations]
symbol:Y17G7B.12 species:6239 "Caenorhabditis elegans"
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 eggNOG:COG0847 HOGENOM:HOG000182422
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00520000055542
EMBL:AL023828 PIR:T26504 RefSeq:NP_496560.1
ProteinModelPortal:Q9XXI3 SMR:Q9XXI3 STRING:Q9XXI3 PaxDb:Q9XXI3
EnsemblMetazoa:Y17G7B.12.1 EnsemblMetazoa:Y17G7B.12.2 GeneID:174842
KEGG:cel:CELE_Y17G7B.12 UCSC:Y17G7B.12 CTD:174842
WormBase:Y17G7B.12 InParanoid:Q9XXI3 OMA:TAKCTIL NextBio:885742
Uniprot:Q9XXI3
Length = 269
Score = 208 (78.3 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 52/158 (32%), Positives = 92/158 (58%)
Query: 8 AVDCEMVLCEDG--SEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCE V G ++ L R+ +V+ K+ D+ VKP + V D+R+ ++G+ ++++
Sbjct: 104 AIDCEYVGAGMGGTTDILARISIVNELGKIVYDKFVKPTEKVTDFRTAVSGIRPENMIKA 163
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTS---LIFKYVDEYRR 120
Q + KL+ +G I++GH+++ND VLKL+H R + DT+ ++ + +
Sbjct: 164 I-PFDRAQTEVSKLI-DGRIVIGHAVHNDFRVLKLNHIRKLTRDTAKCTILKNMANHHGT 221
Query: 121 PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAI 158
PSL L K VLG EI++ G H+ + DA A++L A+
Sbjct: 222 PSLKKLAKEVLGIEIQR-GE-HDSITDARVALRLYEAV 257
>UNIPROTKB|F1N3K9 [details] [associations]
symbol:LOC100335177 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00630000089807 EMBL:DAAA02022135 EMBL:DAAA02022136
IPI:IPI00687563 Ensembl:ENSBTAT00000048722 OMA:FAVNCEV
Uniprot:F1N3K9
Length = 387
Score = 224 (83.9 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 53/152 (34%), Positives = 85/152 (55%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
++A+ CE G E R+ VVD +L+V D VKP++ V DY + +G+ DDL +
Sbjct: 226 VFAMSCEACYTAKGLEP-TRVTVVDPSLQVVYDTFVKPDEEVIDYNTRFSGVAEDDLKNM 284
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKY-VDEYRRPSLY 124
S+ ++Q + L S TIL+GHS + L LKL H ++DT+++F + + R SL
Sbjct: 285 KTSVRDVQAILLNLFSADTILIGHSFEHSLYALKLIHTSIVDTTVLFPHPLGLPHRRSLK 344
Query: 125 NLCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 156
L L I+ + H+ ++A+A M+LVL
Sbjct: 345 GLVADYLQRVIQDEVGGHSSSENATACMELVL 376
>UNIPROTKB|Q66UW5 [details] [associations]
symbol:Isg20 "Interferon-stimulated gene 20 kDa protein"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008859 "exoribonuclease II activity" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0005634
GO:GO:0046872 GO:GO:0045087 GO:GO:0051607 GO:GO:0003723
GO:GO:0090305 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0006364
GO:GO:0008859 CTD:3669 HOVERGEN:HBG052149 KO:K12579 EMBL:AY702647
RefSeq:NP_001005351.2 UniGene:Ssc.42771 ProteinModelPortal:Q66UW5
SMR:Q66UW5 GeneID:448855 KEGG:ssc:448855 Uniprot:Q66UW5
Length = 181
Score = 202 (76.2 bits), Expect = 7.8e-16, P = 7.8e-16
Identities = 61/177 (34%), Positives = 96/177 (54%)
Query: 3 SNIMYAVDCEMVLCEDGSE-GLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 61
S + A+DCEMV E GL R +V+ + V D+ ++PE + DYR+ ++G+T
Sbjct: 4 SREVVAMDCEMVGMGPRRESGLARCSLVNVHGAVLYDKFIQPEGEITDYRTRVSGVTPQH 63
Query: 62 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTS---LIFKY-- 114
+VG T A + + +LL G ++VGH L +D + LK D R + DTS L+++
Sbjct: 64 MVGAT-PFAVARLEILQLLK-GKLVVGHDLKHDFQALKEDMNRYTIYDTSTDMLLWREAK 121
Query: 115 VDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIER-RVDNAVPLL 170
+D RR SL LC+ +L I+ H+ ++DA A M+L I +R R +P L
Sbjct: 122 LDHCRRVSLRVLCERLLHKSIQNSLLGHSSVEDAKATMELY-QISQRIRARRGLPRL 177
>UNIPROTKB|I3LB04 [details] [associations]
symbol:ISG20 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016605 "PML body" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0016605 GO:GO:0003676
GO:GO:0009615 GO:GO:0006401 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 GO:GO:0000175 GO:GO:0000738
GO:GO:0008310 OMA:ARCSLVD EMBL:FP017226 Ensembl:ENSSSCT00000024643
Uniprot:I3LB04
Length = 174
Score = 201 (75.8 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 58/170 (34%), Positives = 95/170 (55%)
Query: 8 AVDCEMV-LCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 66
A+DCEMV L GL R +VD + V D+ ++PE + DYR+ ++G+TA ++ G T
Sbjct: 9 AMDCEMVGLGPFRESGLARCSLVDFHGTVLYDKFIRPEGEITDYRTPVSGITARNMEGAT 68
Query: 67 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLK--LDHPRVIDTS---LIFKYVD-EY-R 119
A + + +LL G ++VGH L +D + LK + + + DT+ L+++ D Y R
Sbjct: 69 -PFAVARLEILQLLK-GKLVVGHDLKHDFKALKENMSNYTIYDTAQDRLLWREADLHYCR 126
Query: 120 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRV-DNAVP 168
R SL L + +LG I+ HN ++DA A M+L + RR+ + +P
Sbjct: 127 RVSLRLLSQRLLGRRIQDSVLGHNSVEDARATMELYR--LSRRIREQGLP 174
>UNIPROTKB|F1PBR5 [details] [associations]
symbol:REXO4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 EMBL:AAEX03006772
Ensembl:ENSCAFT00000031428 Uniprot:F1PBR5
Length = 411
Score = 219 (82.2 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 58/157 (36%), Positives = 91/157 (57%)
Query: 8 AVDCEMVLC-EDGSEGLV-RLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCEMV G E + R+ +V++ K D+ VKP + V DYR+ ++G+ ++L
Sbjct: 234 AMDCEMVGAGPKGEESVAARVSIVNQYGKCVYDKYVKPTQPVTDYRTAVSGIRPENLKQG 293
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDEYRRP 121
+QK + +L G ILVGH+L+NDL+VL LDHP+ + DT FK + RP
Sbjct: 294 E-KFEVVQKEVADMLK-GRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKSGRP 351
Query: 122 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAI 158
SL L + +LG ++++ H + DA AAM+L + +
Sbjct: 352 SLKLLAERILGIQVQQ--AEHCSIQDAQAAMRLYILV 386
>UNIPROTKB|F1RPB4 [details] [associations]
symbol:F1RPB4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00479 Pfam:PF00929 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00630000089807
OMA:KMIHPYV EMBL:FP016068 EMBL:CU464004 Ensembl:ENSSSCT00000008605
Uniprot:F1RPB4
Length = 790
Score = 224 (83.9 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 65/178 (36%), Positives = 95/178 (53%)
Query: 2 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADY-RSE-ITGLTA 59
T + + +D L G E L R+ +V +DELVKP+ + DY SE +G+T
Sbjct: 227 THSHLSGLDNNRCLTSKGRE-LTRISLVAEGGCCVMDELVKPDNKIVDYLTSESFSGITK 285
Query: 60 DDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEY- 118
L VT L ++Q+++K LL +LVGHSL+ DL LK+ HP VIDTSL+ YV E
Sbjct: 286 KILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLL--YVREQG 343
Query: 119 RRPSLYNLCKSVLGYEIR-KKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVA 175
RR L L K++LG +I+ H+ ++DA ++L ++ L E VA
Sbjct: 344 RRFKLKFLAKTILGKDIQCPDRLGHDAIEDARTTLELARYFLKYGPKKIAELNLETVA 401
>MGI|MGI:2684957 [details] [associations]
symbol:Rexo4 "REX4, RNA exonuclease 4 homolog (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 MGI:MGI:2684957
GO:GO:0005730 GO:GO:0003676 GO:GO:0004527 GO:GO:0090305
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 KO:K01175 CTD:57109
HOGENOM:HOG000231626 HOVERGEN:HBG000999 EMBL:AK079733 EMBL:AK138894
EMBL:BC060147 IPI:IPI00407108 RefSeq:NP_997117.2 UniGene:Mm.291874
ProteinModelPortal:Q6PAQ4 SMR:Q6PAQ4 PhosphoSite:Q6PAQ4
PaxDb:Q6PAQ4 PRIDE:Q6PAQ4 DNASU:227656 Ensembl:ENSMUST00000114020
GeneID:227656 KEGG:mmu:227656 UCSC:uc008iwn.1 InParanoid:Q6PAQ4
OMA:EWESIAR ChiTaRS:REXO4 NextBio:378724 Bgee:Q6PAQ4
CleanEx:MM_REXO4 Genevestigator:Q6PAQ4
GermOnline:ENSMUSG00000052406 Uniprot:Q6PAQ4
Length = 432
Score = 219 (82.2 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 57/157 (36%), Positives = 91/157 (57%)
Query: 8 AVDCEMV-LCEDGSEGLV-RLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCEMV + G E + R+ +V++ K D+ VKP + V DYR+ ++G+ ++L
Sbjct: 255 ALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQG 314
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDEYR--RP 121
++K + ++L G ILVGH+L+NDL+VL LDHP+ + DT + + RP
Sbjct: 315 E-EFEVVKKEVAEMLK-GRILVGHALHNDLKVLFLDHPKKKIRDTQKFKPFRSRVKSGRP 372
Query: 122 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAI 158
SL L + +LG IR + H + DA AAM+L + +
Sbjct: 373 SLKRLSEKILG--IRVQQAEHCSIQDAQAAMRLYVMV 407
>UNIPROTKB|H9KZR7 [details] [associations]
symbol:H9KZR7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 EMBL:AADN02075373
Ensembl:ENSGALT00000017760 OMA:PTESDIW Uniprot:H9KZR7
Length = 379
Score = 217 (81.4 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 59/154 (38%), Positives = 90/154 (58%)
Query: 8 AVDCEMV-LCEDGSEGLV-RLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL-VG 64
A+DCEMV + G + +V R+ +V+ K D+ VKP + V DYR+ ++G+ + L G
Sbjct: 207 AMDCEMVGVGPSGEDSIVARVSIVNLFGKCIYDKYVKPTEEVTDYRTAVSGIRPEHLKTG 266
Query: 65 VTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDEYRR 120
+QK + +L NG ILVGH+L+NDL+VL LDHP+ + DT F+ + R
Sbjct: 267 E--DFKTVQKEVADIL-NGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFRQRVKNAR 323
Query: 121 PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
PSL LC +L +++ + H + DA AAM+L
Sbjct: 324 PSLKLLCDRLLDVQVQT--SEHCSIQDAQAAMRL 355
>UNIPROTKB|I3LLP7 [details] [associations]
symbol:I3LLP7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
SUPFAM:SSF53098 GeneTree:ENSGT00630000089807 EMBL:CU571150
Ensembl:ENSSSCT00000025893 OMA:QKKRIAH Uniprot:I3LLP7
Length = 999
Score = 225 (84.3 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 56/155 (36%), Positives = 88/155 (56%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADY--RSEITGLTADDLV 63
++AV+C+M G E L + VVD +L+V D VKP++ + DY RS +G+ +DL
Sbjct: 835 VFAVNCQMCYTAKGLE-LTHVTVVDSSLQVVYDTFVKPDEEIIDYNTRSRFSGVVENDLK 893
Query: 64 GVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKY-VDEYRRPS 122
S+ ++Q + L S TIL+GHS + L LKL H V+DT+++F + + + S
Sbjct: 894 NTKTSICDVQAILLNLFSADTILIGHSFEHSLYALKLIHTSVVDTTVMFPHRLGLPHKRS 953
Query: 123 LYNLCKSVLGYEIRKKGTP-HNCLDDASAAMKLVL 156
L +L L I+ G HN ++A+A M+LVL
Sbjct: 954 LKSLVADYLQRIIQDDGFGGHNSSENATACMELVL 988
>UNIPROTKB|I3L751 [details] [associations]
symbol:REXO4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0005730 GO:GO:0003676
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 OMA:QKEVAEM EMBL:FP565513
Ensembl:ENSSSCT00000028732 Uniprot:I3L751
Length = 421
Score = 218 (81.8 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 59/158 (37%), Positives = 93/158 (58%)
Query: 8 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLV-G 64
A+DCEMV + G E L R+ +V++ K D+ VKP + V DYR+ ++G+ ++L G
Sbjct: 244 ALDCEMVGVGPQGDESMLARVSLVNQFGKCVYDKYVKPTQPVTDYRTAVSGIRPENLAQG 303
Query: 65 VTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDEYR--R 120
+ +QK + LL G ILVGH+L+NDL+VL L HP+ V DT + + + R
Sbjct: 304 EEFEI--VQKEVAALLK-GRILVGHALHNDLKVLFLGHPKKKVRDTQKYRPFRSQVKSGR 360
Query: 121 PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAI 158
PSL L + +LG +++ H + DA AAM+L +++
Sbjct: 361 PSLKLLAEKILGLPVQQ--AEHCSVQDAQAAMRLYISV 396
>UNIPROTKB|F1NQP7 [details] [associations]
symbol:Gga.48606 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 OMA:QKEVAEM EMBL:AADN02026478
IPI:IPI00594596 Ensembl:ENSGALT00000005016 Uniprot:F1NQP7
Length = 414
Score = 217 (81.4 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 59/154 (38%), Positives = 90/154 (58%)
Query: 8 AVDCEMV-LCEDGSEGLV-RLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL-VG 64
A+DCEMV + G + +V R+ +V+ K D+ VKP + V DYR+ ++G+ + L G
Sbjct: 242 AMDCEMVGVGPSGEDSIVARVSIVNLFGKCIYDKYVKPTEEVTDYRTAVSGIRPEHLKTG 301
Query: 65 VTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDEYRR 120
+QK + +L NG ILVGH+L+NDL+VL LDHP+ + DT F+ + R
Sbjct: 302 E--DFKTVQKEVADIL-NGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFRQRVKNAR 358
Query: 121 PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
PSL LC +L +++ + H + DA AAM+L
Sbjct: 359 PSLKLLCDRLLDVQVQT--SEHCSIQDAQAAMRL 390
>TAIR|locus:2086320 [details] [associations]
symbol:AT3G15080 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009165 "nucleotide biosynthetic process"
evidence=RCA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 eggNOG:COG0847 HOGENOM:HOG000182422
InterPro:IPR013520 SUPFAM:SSF53098 EMBL:AY087954 EMBL:BT024904
EMBL:EU682310 EMBL:AK228883 IPI:IPI00522165 RefSeq:NP_566499.1
UniGene:At.39112 ProteinModelPortal:Q8LAA0 STRING:Q8LAA0
PaxDb:Q8LAA0 PRIDE:Q8LAA0 EnsemblPlants:AT3G15080.1 GeneID:820738
KEGG:ath:AT3G15080 TAIR:At3g15080 InParanoid:Q8LAA0 OMA:CPIEDAR
PhylomeDB:Q8LAA0 ProtClustDB:CLSN2688390 Genevestigator:Q8LAA0
Uniprot:Q8LAA0
Length = 275
Score = 201 (75.8 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 56/150 (37%), Positives = 85/150 (56%)
Query: 8 AVDCEMVLCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 66
A+DCEMV G++ L R+ +V++ V DE V+P + V D+R+ I+G+ DL
Sbjct: 85 AMDCEMVGVSQGTKSALGRVTLVNKWGNVLYDEFVRPVEHVVDFRTSISGIRPRDLRKAK 144
Query: 67 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDEYRRPSLY 124
Q ++ +L+ G ILVGH+L+NDL+ L L HP+ + DT ++ R SL
Sbjct: 145 -DFRVAQTKVAELIK-GKILVGHALHNDLKALLLTHPKKDIRDTGEYQPFLKGKTRKSLK 202
Query: 125 NLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
+L +LG +I+ G H +DDA AAM L
Sbjct: 203 HLASEILGADIQN-GE-HCPIDDARAAMML 230
>RGD|1306220 [details] [associations]
symbol:Rexo4 "REX4, RNA exonuclease 4 homolog (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
RGD:1306220 GO:GO:0005730 GO:GO:0003676 GO:GO:0004527
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 KO:K01175 CTD:57109
HOGENOM:HOG000231626 HOVERGEN:HBG000999 OrthoDB:EOG4VX263
EMBL:BC161820 IPI:IPI00563200 RefSeq:NP_001029056.1
UniGene:Rn.116879 Ensembl:ENSRNOT00000042289 GeneID:311826
KEGG:rno:311826 UCSC:RGD:1306220 NextBio:664229
Genevestigator:B1WBN4 Uniprot:B1WBN4
Length = 409
Score = 216 (81.1 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 56/161 (34%), Positives = 95/161 (59%)
Query: 8 AVDCEMV-LCEDGSEGLV-RLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCEMV + G E + R+ +V++ K D+ VKP + V DYR+ ++G+ ++L
Sbjct: 232 ALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQG 291
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDEYRRP 121
++K + +L G ILVGH+L NDL+VL L+HP+ + DT F+ + + RP
Sbjct: 292 E-EFEVVKKEVAAMLK-GRILVGHALRNDLKVLFLEHPKKKIRDTQKFKPFRSLVKSARP 349
Query: 122 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERR 162
SL L + +LG +++ H + DA AAM+L + +++R+
Sbjct: 350 SLKQLSEKILGLRVQQ--AEHCSVQDAQAAMRLYI-MVKRK 387
>UNIPROTKB|E2R2F5 [details] [associations]
symbol:ISG20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016605 "PML body" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008310 "single-stranded DNA
specific 3'-5' exodeoxyribonuclease activity" evidence=IEA]
[GO:0006401 "RNA catabolic process" evidence=IEA] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0016605 GO:GO:0003676
GO:GO:0009615 GO:GO:0006401 InterPro:IPR013520 SUPFAM:SSF53098
GO:GO:0000175 GO:GO:0000738 GO:GO:0008310
Ensembl:ENSCAFT00000018291 Uniprot:E2R2F5
Length = 183
Score = 196 (74.1 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 55/171 (32%), Positives = 91/171 (53%)
Query: 8 AVDCEMV-LCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 66
A+DCEMV + GL R +VD + V D+ ++PE + DYR++++G+T + T
Sbjct: 9 AIDCEMVGVGPSRKSGLARCSLVDLHGTVLYDKFIRPEGEITDYRTQVSGITPRHMEQAT 68
Query: 67 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLK--LDHPRVIDTS---LIFKYVD--EYR 119
A + + +LL G ++VGH L +D + LK + + + DTS L+++ + R
Sbjct: 69 -PFAVARLEILQLLE-GKLVVGHDLKHDFQALKENMSNYAIYDTSTDRLLWREANLQNCR 126
Query: 120 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLL 170
R SL L + +LG I+ H+ ++DA AAM+L R A PL+
Sbjct: 127 RVSLRVLSERLLGRRIQNSRFGHSSVEDAKAAMELYRLSRRIRARKAAPLM 177
>ZFIN|ZDB-GENE-061013-448 [details] [associations]
symbol:zgc:152968 "zgc:152968" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 ZFIN:ZDB-GENE-061013-448 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00630000089807 EMBL:CR762466 IPI:IPI00870950
ProteinModelPortal:B8JII5 Ensembl:ENSDART00000139636
HOVERGEN:HBG106838 OMA:DPMEECY ArrayExpress:B8JII5 Bgee:B8JII5
Uniprot:B8JII5
Length = 1251
Score = 225 (84.3 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 51/152 (33%), Positives = 85/152 (55%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
+YA+D + G E L R+ VV +L+V D VKP+ V DY + +G++ D+
Sbjct: 1089 IYAIDTQTCYTTQGLE-LARVTVVSSSLQVVFDSFVKPDNDVIDYNTRFSGISEADVKSS 1147
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKY-VDEYRRPSLY 124
+ SL ++Q + ++ TIL+GH L NDL LK+ H V+DTS++F + + + L
Sbjct: 1148 SSSLRDVQAVLLSFINADTILIGHGLENDLAALKIIHSTVVDTSVVFPHRLGLPHKRELN 1207
Query: 125 NLCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 156
+L L I++ H+ +DA+A M+L+L
Sbjct: 1208 SLTADYLRRIIQESVEGHDTREDATACMELML 1239
Score = 40 (19.1 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 2 TSNIMYAVDCEMVL 15
TSN+ Y+ C+M +
Sbjct: 569 TSNVSYSAACDMTV 582
>RGD|1306407 [details] [associations]
symbol:Isg20 "interferon stimulated exonuclease gene 20"
species:10116 "Rattus norvegicus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=ISO] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006401 "RNA catabolic process" evidence=ISO] [GO:0008310
"single-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0016605 "PML body" evidence=ISO] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 RGD:1306407
GO:GO:0016605 GO:GO:0003676 GO:GO:0009615 GO:GO:0006401
eggNOG:COG0847 HOGENOM:HOG000182422 InterPro:IPR013520
SUPFAM:SSF53098 GeneTree:ENSGT00520000055542 GO:GO:0000175
GO:GO:0000738 GO:GO:0008310 CTD:3669 HOVERGEN:HBG052149 KO:K12579
OrthoDB:EOG4M91SN EMBL:BC086557 IPI:IPI00364365
RefSeq:NP_001008510.1 UniGene:Rn.16103 SMR:Q5RJP5
Ensembl:ENSRNOT00000024826 GeneID:293052 KEGG:rno:293052
NextBio:635263 Genevestigator:Q5RJP5 Uniprot:Q5RJP5
Length = 181
Score = 193 (73.0 bits), Expect = 8.0e-15, P = 8.0e-15
Identities = 56/171 (32%), Positives = 84/171 (49%)
Query: 8 AVDCEMV-LCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 66
A+DCEMV L GL R +V+ + V D+ ++PE + DYR++++G+T + T
Sbjct: 9 AMDCEMVGLGPQRVSGLARCSIVNVHSAVLYDKYIQPEGEITDYRTQVSGITPQHMARAT 68
Query: 67 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDE-----YR 119
AE + + +LL G ++VGH L +D LK D + + DTS E Y
Sbjct: 69 -PFAEARLEILQLLK-GKLVVGHDLKHDFSALKEDMRKYTIYDTSTDMLLWHEAKLHCYS 126
Query: 120 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLL 170
R SL LCK +L I+ H ++DA A M+L R +P L
Sbjct: 127 RVSLRLLCKRLLHKSIQNNWRGHCSVEDARATMELYKISQRLRAQRGLPCL 177
>UNIPROTKB|E1BNM5 [details] [associations]
symbol:ISG20 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016605 "PML body" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0016605 GO:GO:0003676
GO:GO:0009615 GO:GO:0006401 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 GO:GO:0000175 GO:GO:0000738
GO:GO:0008310 CTD:3669 KO:K12579 EMBL:DAAA02052106 IPI:IPI00695516
RefSeq:XP_002696560.1 RefSeq:XP_583075.1 UniGene:Bt.22275
ProteinModelPortal:E1BNM5 Ensembl:ENSBTAT00000019639 GeneID:506604
KEGG:bta:506604 NextBio:20867677 Uniprot:E1BNM5
Length = 171
Score = 192 (72.6 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 56/164 (34%), Positives = 91/164 (55%)
Query: 8 AVDCEMV-LCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 66
A+DCEMV L GL R +VD + V D+ ++PE + DYR+ ++G+TA ++ G T
Sbjct: 9 AMDCEMVGLGPFRESGLARCSLVDYHGSVLYDKFIRPEGDITDYRTPVSGITARNMEGAT 68
Query: 67 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLK--LDHPRVIDTSL---IFKYVD-EY-R 119
A + + ++L G ++VGH L +D + LK + + DT+ +++ +Y R
Sbjct: 69 -PFAVARLEILQVLK-GKLVVGHDLKHDFKALKENMSDYAIYDTAADRRLWREAGLQYCR 126
Query: 120 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRV 163
R SL L + +LG I+ HN ++DA AAM+L I RR+
Sbjct: 127 RVSLRVLSQRLLGRRIQDSVLGHNSVEDARAAMELYR--ISRRI 168
>UNIPROTKB|G3N2Q8 [details] [associations]
symbol:ISG20 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016605 "PML body" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0008310 "single-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0016605 GO:GO:0003676
GO:GO:0009615 GO:GO:0006401 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 GO:GO:0000175 GO:GO:0000738
GO:GO:0008310 OMA:ARCSLVD EMBL:DAAA02052106
Ensembl:ENSBTAT00000065058 Uniprot:G3N2Q8
Length = 181
Score = 192 (72.6 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 56/164 (34%), Positives = 91/164 (55%)
Query: 8 AVDCEMV-LCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 66
A+DCEMV L GL R +VD + V D+ ++PE + DYR+ ++G+TA ++ G T
Sbjct: 9 AMDCEMVGLGPFRESGLARCSLVDYHGSVLYDKFIRPEGDITDYRTPVSGITARNMEGAT 68
Query: 67 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLK--LDHPRVIDTSL---IFKYVD-EY-R 119
A + + ++L G ++VGH L +D + LK + + DT+ +++ +Y R
Sbjct: 69 -PFAVARLEILQVLK-GKLVVGHDLKHDFKALKENMSDYAIYDTAADRRLWREAGLQYCR 126
Query: 120 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRV 163
R SL L + +LG I+ HN ++DA AAM+L I RR+
Sbjct: 127 RVSLRVLSQRLLGRRIQDSVLGHNSVEDARAAMELYR--ISRRI 168
>UNIPROTKB|Q96AZ6 [details] [associations]
symbol:ISG20 "Interferon-stimulated gene 20 kDa protein"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0008859 "exoribonuclease II activity"
evidence=IEA] [GO:0016605 "PML body" evidence=IDA] [GO:0006401 "RNA
catabolic process" evidence=IDA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IDA] [GO:0008310
"single-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0009615 "response to virus" evidence=IDA]
[GO:0008283 "cell proliferation" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0019221 "cytokine-mediated
signaling pathway" evidence=TAS] [GO:0060337 "type I
interferon-mediated signaling pathway" evidence=TAS]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
Reactome:REACT_6900 GO:GO:0060337 GO:GO:0046872 GO:GO:0016605
GO:GO:0008283 GO:GO:0051607 GO:GO:0003723 GO:GO:0009615
GO:GO:0006401 eggNOG:COG0847 HOGENOM:HOG000182422
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0006364 GO:GO:0000175
GO:GO:0000738 GO:GO:0008310 GO:GO:0008859 EMBL:X89773 EMBL:U88964
EMBL:BT006952 EMBL:CR456942 EMBL:BC007922 EMBL:BC016341
IPI:IPI00514614 IPI:IPI00647246 RefSeq:NP_002192.2
UniGene:Hs.459265 PDB:1WLJ PDBsum:1WLJ ProteinModelPortal:Q96AZ6
SMR:Q96AZ6 STRING:Q96AZ6 PhosphoSite:Q96AZ6 DMDM:57012967
PaxDb:Q96AZ6 PRIDE:Q96AZ6 DNASU:3669 Ensembl:ENST00000306072
Ensembl:ENST00000560741 GeneID:3669 KEGG:hsa:3669 UCSC:uc002bmv.1
CTD:3669 GeneCards:GC15P089181 HGNC:HGNC:6130 MIM:604533
neXtProt:NX_Q96AZ6 PharmGKB:PA29930 HOVERGEN:HBG052149 KO:K12579
OMA:ARCSLVD OrthoDB:EOG4M91SN PhylomeDB:Q96AZ6 ChiTaRS:ISG20
EvolutionaryTrace:Q96AZ6 GenomeRNAi:3669 NextBio:14359 Bgee:Q96AZ6
CleanEx:HS_ISG20 Genevestigator:Q96AZ6 GermOnline:ENSG00000172183
Uniprot:Q96AZ6
Length = 181
Score = 190 (71.9 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 59/177 (33%), Positives = 94/177 (53%)
Query: 3 SNIMYAVDCEMV-LCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 61
S + A+DCEMV L GL R +V+ + V D+ ++PE + DYR+ ++G+T
Sbjct: 4 SREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQH 63
Query: 62 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTS---LIFKY-- 114
+VG T A + + +LL G ++VGH L +D + LK D + DTS L+++
Sbjct: 64 MVGAT-PFAVARLEILQLLK-GKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAK 121
Query: 115 VDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIER-RVDNAVPLL 170
+D RR SL L + +L I+ H+ ++DA A M+L I +R R +P L
Sbjct: 122 LDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELY-QISQRIRARRGLPRL 177
>UNIPROTKB|F6X5D6 [details] [associations]
symbol:ISG20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 CTD:3669 KO:K12579 OMA:ARCSLVD
Ensembl:ENSCAFT00000018291 EMBL:AAEX03002317 RefSeq:XP_545847.2
GeneID:488729 KEGG:cfa:488729 Uniprot:F6X5D6
Length = 171
Score = 189 (71.6 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 53/164 (32%), Positives = 90/164 (54%)
Query: 8 AVDCEMV-LCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 66
A+DCEMV + GL R +VD + V D+ ++PE + DYR++++G+T + T
Sbjct: 9 AIDCEMVGVGPSRKSGLARCSLVDLHGTVLYDKFIRPEGEITDYRTQVSGITPRHMEQAT 68
Query: 67 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLK--LDHPRVIDTS---LIFKYVD--EYR 119
A + + +LL G ++VGH L +D + LK + + + DTS L+++ + R
Sbjct: 69 -PFAVARLEILQLLE-GKLVVGHDLKHDFQALKENMSNYAIYDTSTDRLLWREANLQNCR 126
Query: 120 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRV 163
R SL L + +LG I+ H+ ++DA AAM+L + RR+
Sbjct: 127 RVSLRVLSERLLGRRIQNSRFGHSSVEDAKAAMELYR--LSRRI 168
>UNIPROTKB|F1N5B5 [details] [associations]
symbol:REXO4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0005730 GO:GO:0003676
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 OMA:QKEVAEM EMBL:DAAA02032345
EMBL:DAAA02032346 IPI:IPI01000627 Ensembl:ENSBTAT00000026283
Uniprot:F1N5B5
Length = 402
Score = 207 (77.9 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 54/157 (34%), Positives = 92/157 (58%)
Query: 8 AVDCEMV-LCEDGSEGLV-RLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCEMV + +G E +V R+ +V+++ + D+ VKP + V DYR+ ++G+ DL
Sbjct: 227 AMDCEMVGVGPEGEESVVARVSLVNQHGRCVYDKHVKPTQPVTDYRTAVSGVRPADLAQG 286
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDEYR--RP 121
+Q+ + +LL G ILVGH+L+NDL+ L L HP+ + DT + + + RP
Sbjct: 287 E-EFEVVQREVAELLK-GRILVGHALHNDLKALFLGHPKKKIRDTQKYKPFRTQVKSGRP 344
Query: 122 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAI 158
SL L + +LG ++++ H + DA AM+L + +
Sbjct: 345 SLKLLAERILGIQVQQ--AEHCSVQDAQVAMRLYVLV 379
>SGD|S000005440 [details] [associations]
symbol:REX4 "Putative RNA exonuclease possibly involved in
ribosome biogenesis" species:4932 "Saccharomyces cerevisiae"
[GO:0005622 "intracellular" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA;IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0008408 "3'-5' exonuclease
activity" evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IGI]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 SGD:S000005440
Pfam:PF00929 GO:GO:0005730 EMBL:BK006948 GO:GO:0003676
eggNOG:COG0847 HOGENOM:HOG000182422 InterPro:IPR013520
SUPFAM:SSF53098 GeneTree:ENSGT00520000055542 GO:GO:0008408
GO:GO:0006364 KO:K01175 GO:GO:0000027 EMBL:Z74822 OrthoDB:EOG4TB7M4
PIR:S66773 RefSeq:NP_014561.1 ProteinModelPortal:Q08237 SMR:Q08237
DIP:DIP-5458N IntAct:Q08237 MINT:MINT-543211 STRING:Q08237
PaxDb:Q08237 EnsemblFungi:YOL080C GeneID:854075 KEGG:sce:YOL080C
CYGD:YOL080c OMA:ALMLSHP NextBio:975698 Genevestigator:Q08237
GermOnline:YOL080C Uniprot:Q08237
Length = 289
Score = 198 (74.8 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 57/154 (37%), Positives = 88/154 (57%)
Query: 8 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCE V + +G E L R+ +V+ V +DE VKP + V ++R+ ++G+ + +
Sbjct: 123 AMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHMKNA 182
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTS--LIF-KYVDEYRR 120
+ E QK+ +L G ILVGH+L +DLE L L HP+ + DTS L F K + +
Sbjct: 183 I-TFKEAQKKTADILE-GRILVGHALKHDLEALMLSHPKSLLRDTSRHLPFRKLYAKGKT 240
Query: 121 PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
PSL L + VL I++ G H+ ++DA A M L
Sbjct: 241 PSLKKLTREVLKISIQE-GE-HSSVEDARATMLL 272
>CGD|CAL0003518 [details] [associations]
symbol:orf19.5220 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000027 "ribosomal large subunit
assembly" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 CGD:CAL0003518
Pfam:PF00929 GO:GO:0005634 GO:GO:0003676 GO:GO:0004527
GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
GO:GO:0006364 KO:K01175 EMBL:AACQ01000070 EMBL:AACQ01000071
RefSeq:XP_716289.1 RefSeq:XP_716353.1 ProteinModelPortal:Q5A3Q0
STRING:Q5A3Q0 GeneID:3641941 GeneID:3642012 KEGG:cal:CaO19.12687
KEGG:cal:CaO19.5220 Uniprot:Q5A3Q0
Length = 285
Score = 193 (73.0 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 53/167 (31%), Positives = 97/167 (58%)
Query: 8 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLV-G 64
A+DCE V + +DG E L R+ +++ V +D V+P++ V D+R+ ++G+ + +
Sbjct: 118 AIDCEFVGIGKDGEESALARISIINYYGVVLLDTYVRPQERVTDWRTWVSGIQSYHMQDA 177
Query: 65 VTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDEYRR 120
+ A++ K M+ L N ILVGH++NNDL++L L HP+ + DT F+ + +
Sbjct: 178 IDFKTAQL-KTME--LINNKILVGHAVNNDLDILFLSHPKSMIRDTCKFPKFREIAGGKS 234
Query: 121 PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAV 167
PSL L K + +I+ G H+ ++DA A M L+ + +R ++ ++
Sbjct: 235 PSLKKLIKHFIQVDIQI-GQ-HSSVEDARATM-LLFRLFKREIEQSM 278
>ASPGD|ASPL0000065793 [details] [associations]
symbol:AN10955 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0003676 GO:GO:0005622 EMBL:BN001304 GO:GO:0004527
HOGENOM:HOG000182422 InterPro:IPR013520 SUPFAM:SSF53098
ProteinModelPortal:C8VBH1 EnsemblFungi:CADANIAT00000588 OMA:KHMAEAR
Uniprot:C8VBH1
Length = 299
Score = 193 (73.0 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 54/154 (35%), Positives = 82/154 (53%)
Query: 8 AVDCEMVLC---EDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVG 64
A+DCEMV D L R+ +V+ N D V+P++ V D+R+ ++G+ +
Sbjct: 106 AMDCEMVGIGPDPDNDSALARVSIVNYNGDQVYDSYVRPKEMVTDWRTHVSGILPKHMAE 165
Query: 65 VTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDEYRR 120
SL ++QK + ++L G ILVGH+L NDL+ L L HP+ + DTS ++ V
Sbjct: 166 AR-SLEQVQKEVAEILE-GRILVGHALRNDLDALLLSHPKRDIRDTSKHPPYRKVAGGGS 223
Query: 121 PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
P L L LG I+ G H+ ++DA A M L
Sbjct: 224 PRLKILASEFLGLNIQA-GA-HSSMEDAKATMLL 255
>UNIPROTKB|E2R7T9 [details] [associations]
symbol:REXO4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 OMA:QKEVAEM EMBL:AAEX03006772
Ensembl:ENSCAFT00000035775 Uniprot:E2R7T9
Length = 447
Score = 194 (73.4 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 53/146 (36%), Positives = 84/146 (57%)
Query: 8 AVDCEMVLC-EDGSEGLV-RLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCEMV G E + R+ +V++ K D+ VKP + V DYR+ ++G+ ++L
Sbjct: 247 AMDCEMVGAGPKGEESVAARVSIVNQYGKCVYDKYVKPTQPVTDYRTAVSGIRPENLKQG 306
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDEYRRP 121
+QK + +L G ILVGH+L+NDL+VL LDHP+ + DT FK + RP
Sbjct: 307 E-KFEVVQKEVADMLK-GRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKSGRP 364
Query: 122 SLYNLCKSVLGYEIRKKGTPHNCLDD 147
SL L + +LG ++++ +C D+
Sbjct: 365 SLKLLAERILGIQVQQA---EHCSDN 387
>UNIPROTKB|H3BM72 [details] [associations]
symbol:LOC81691 "Protein LOC81691" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR012337 Pfam:PF00929 GO:GO:0003676 EMBL:AC004381
InterPro:IPR013520 SUPFAM:SSF53098 Ensembl:ENST00000566276
Bgee:H3BM72 Uniprot:H3BM72
Length = 212
Score = 171 (65.3 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 37/90 (41%), Positives = 54/90 (60%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
++ +DCEM L G E L R+ +V +DELVKPE + DY + +G+T L V
Sbjct: 124 LFGLDCEMCLTSKGRE-LTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPV 182
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDL 95
T L ++Q+++K LL +LVGHSL+ DL
Sbjct: 183 TTKLKDVQRQLKALLPPDAVLVGHSLDLDL 212
>UNIPROTKB|Q8WTP8 [details] [associations]
symbol:AEN "Apoptosis-enhancing nuclease" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0010212 "response to ionizing radiation"
evidence=IDA] [GO:0004527 "exonuclease activity" evidence=IDA]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0005654 GO:GO:0005730
GO:GO:0042771 GO:GO:0003676 GO:GO:0010212 GO:GO:0004527
EMBL:AF327352 EMBL:AC013489 EMBL:CH471101 EMBL:BC005164
EMBL:BC014407 EMBL:BC020988 EMBL:AK022546 IPI:IPI00074083
IPI:IPI00141525 RefSeq:NP_073604.3 UniGene:Hs.436102
ProteinModelPortal:Q8WTP8 SMR:Q8WTP8 STRING:Q8WTP8
PhosphoSite:Q8WTP8 DMDM:296434390 PRIDE:Q8WTP8 DNASU:64782
Ensembl:ENST00000332810 Ensembl:ENST00000379231 GeneID:64782
KEGG:hsa:64782 UCSC:uc002bmt.2 CTD:64782 GeneCards:GC15P089164
H-InvDB:HIX0012556 HGNC:HGNC:25722 HPA:HPA048599 MIM:610177
neXtProt:NX_Q8WTP8 PharmGKB:PA162375720 eggNOG:COG0847
HOGENOM:HOG000182422 HOVERGEN:HBG100435 OMA:HKRKSRQ
OrthoDB:EOG4P8FJM PhylomeDB:Q8WTP8 GenomeRNAi:64782 NextBio:66818
ArrayExpress:Q8WTP8 Bgee:Q8WTP8 CleanEx:HS_AEN
Genevestigator:Q8WTP8 InterPro:IPR013520 SUPFAM:SSF53098
Uniprot:Q8WTP8
Length = 325
Score = 186 (70.5 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 55/159 (34%), Positives = 86/159 (54%)
Query: 8 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL- 62
A+DCEMV G G L R +V + V D+ ++PE +ADYR+ +G+T +
Sbjct: 112 AIDCEMV--GTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHMR 169
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDE--- 117
V +A QK + KLL G ++VGH+L+ND + LK HPR DT+ + ++ E
Sbjct: 170 KAVPFQVA--QKEILKLLK-GKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSEPGL 226
Query: 118 --YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
R SL +L +L +I+ H+ ++DA+ AM+L
Sbjct: 227 HTRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMEL 265
>POMBASE|SPAC1782.08c [details] [associations]
symbol:rex3 "exonuclease Rex3 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISO] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=ISO] [GO:0043628 "ncRNA 3'-end processing" evidence=ISO]
InterPro:IPR000571 InterPro:IPR006055 InterPro:IPR012337
PROSITE:PS50103 SMART:SM00479 PomBase:SPAC1782.08c Pfam:PF00929
GO:GO:0005739 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:COG0847
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0000467
GO:GO:0034476 PIR:T50098 RefSeq:NP_594715.1
ProteinModelPortal:Q9P7H2 EnsemblFungi:SPAC1782.08c.1
GeneID:2542165 KEGG:spo:SPAC1782.08c OMA:CETANSK OrthoDB:EOG48KVM8
NextBio:20803237 Uniprot:Q9P7H2
Length = 540
Score = 191 (72.3 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 53/152 (34%), Positives = 88/152 (57%)
Query: 8 AVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGL-TADDLV-GV 65
A+DCE+ +G E L RL VV + + +D +KP+ + + +G+ A +L G+
Sbjct: 384 ALDCELCYTTNGME-LARLTVVAKE-SIIMDVFIKPKGKILSLNTRFSGIHDAKELESGI 441
Query: 66 TCSLAEIQKRMKKL-LSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV-DEYRRPSL 123
T + ++ ++K+L ++ TIL+GH L NDL ++L H RVIDT+L+F + R SL
Sbjct: 442 T--MDQMYIKIKELGMNKNTILIGHGLENDLNAMRLIHKRVIDTALLFTHARGPPFRYSL 499
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLV 155
L K LG I+ + H+ +DA +A++LV
Sbjct: 500 KYLTKKYLGTTIQT--STHDSEEDAVSALQLV 529
>WB|WBGene00004095 [details] [associations]
symbol:pqe-1 species:6239 "Caenorhabditis elegans"
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0005634 GO:GO:0003676 GO:GO:0004527 GO:GO:0090305
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 KO:K14570
EMBL:FO081435 PIR:T16421 RefSeq:NP_498135.2 RefSeq:NP_498136.2
RefSeq:NP_498137.2 RefSeq:NP_741133.1 RefSeq:NP_741134.1
RefSeq:NP_741135.1 UniGene:Cel.17767 ProteinModelPortal:Q10124
SMR:Q10124 DIP:DIP-26275N MINT:MINT-1038159 STRING:Q10124
PaxDb:Q10124 PRIDE:Q10124 EnsemblMetazoa:F52C9.8b GeneID:175731
KEGG:cel:CELE_F52C9.8 UCSC:F52C9.8d.2 CTD:175731 WormBase:F52C9.8a
WormBase:F52C9.8b WormBase:F52C9.8c WormBase:F52C9.8d
WormBase:F52C9.8e WormBase:F52C9.8f GeneTree:ENSGT00630000089807
InParanoid:Q10124 OMA:DICRYHN NextBio:889402 ArrayExpress:Q10124
Uniprot:Q10124
Length = 1647
Score = 196 (74.1 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 49/156 (31%), Positives = 84/156 (53%)
Query: 3 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL 62
S +YA+DCEMV G L RL +VD +D VKP V D +E +GLT + +
Sbjct: 1475 STRVYALDCEMVYTIAGP-ALARLTMVDMQRNRVLDVFVKPPTDVLDPNTEFSGLTMEQI 1533
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPS 122
+L +++ K ++ TIL+GHSL +DL+ +++ H VIDT+++F+ + + +
Sbjct: 1534 NSAPDTLKTCHQKLFKYVNADTILIGHSLESDLKAMRVVHKNVIDTAILFRSTRD-TKVA 1592
Query: 123 LYNLCKSVLGYEIR---KKGTPHNCLDDASAAMKLV 155
L L +L I+ + H+ ++DA + L+
Sbjct: 1593 LKVLSAKLLHKNIQGDNEDAIGHDSMEDALTCVDLI 1628
>ZFIN|ZDB-GENE-070928-8 [details] [associations]
symbol:isg20l2 "interferon stimulated exonuclease
gene 20-like 2" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
ZFIN:ZDB-GENE-070928-8 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
eggNOG:COG0847 HOGENOM:HOG000182422 InterPro:IPR013520
SUPFAM:SSF53098 GeneTree:ENSGT00520000055542 CTD:81875
OrthoDB:EOG4H4641 EMBL:AL954306 EMBL:BC152518 IPI:IPI00931450
RefSeq:NP_001096663.1 UniGene:Dr.87096 Ensembl:ENSDART00000109664
GeneID:558447 KEGG:dre:558447 HOVERGEN:HBG095874 InParanoid:A3KH10
NextBio:20882472 Uniprot:A3KH10
Length = 321
Score = 183 (69.5 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 56/167 (33%), Positives = 90/167 (53%)
Query: 5 IMY-AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 61
I Y A+DCEMV G++ L R +V + V D+ VKP V DYR+ +G+ D
Sbjct: 134 IKYLALDCEMVGTGPKGAQSELARCSIVSYDGDVVYDKYVKPINPVTDYRTRWSGIRRQD 193
Query: 62 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLIFKYVDEYR 119
L+ T QK + K+++ G ++VGH+++ND + LK HP + DTS I ++
Sbjct: 194 LLHAT-PFYHAQKEIVKIIT-GKVVVGHAIHNDFKALKYFHPAFQTRDTSRIPLLNEKAG 251
Query: 120 RP-----SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIER 161
P SL L +++L +I+ H+ ++DA A M+L ++ER
Sbjct: 252 FPEKQCVSLKKLTQAILKRDIQTGYRGHSSVEDAKATMELY-KVVER 297
>DICTYBASE|DDB_G0281327 [details] [associations]
symbol:rexo4 "RNA exonuclease 4" species:44689
"Dictyostelium discoideum" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] InterPro:IPR012337
dictyBase:DDB_G0281327 Pfam:PF00929 GO:GO:0005634
GenomeReviews:CM000152_GR EMBL:AAFI02000040 GO:GO:0003676
GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
GO:GO:0004518 RefSeq:XP_640882.1 ProteinModelPortal:Q54U94
STRING:Q54U94 EnsemblProtists:DDB0305008 GeneID:8622938
KEGG:ddi:DDB_G0281327 OMA:NDIPESQ Uniprot:Q54U94
Length = 298
Score = 180 (68.4 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 42/136 (30%), Positives = 81/136 (59%)
Query: 3 SNIMYAVDCEMVLCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 61
S+ +++DC+++ E G++G L ++C+ ++N ++ +++VKP + D+R++ TGLT D
Sbjct: 122 SSKFFSIDCKIIEIE-GNKGTLGKVCIANQNGQIIYEKIVKPMDKIVDFRTKFTGLTRDK 180
Query: 62 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLIFKYV--DE 117
+ ++QK ++K+L + ILVGH L +DL+ LKL H + + D + K+ D
Sbjct: 181 VQREGTDFLQVQKEVEKILRH-KILVGHDLVHDLKNLKLAHKKKLLRDATQFTKFFNPDT 239
Query: 118 YRRPSLYNLCKSVLGY 133
SL ++ K L +
Sbjct: 240 NSEDSLKSIAKRELNF 255
>UNIPROTKB|Q5REE2 [details] [associations]
symbol:AEN "Apoptosis-enhancing nuclease" species:9601
"Pongo abelii" [GO:0004527 "exonuclease activity" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0010212 "response to ionizing radiation"
evidence=ISS] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=ISS]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0005654 GO:GO:0005730 GO:GO:0042771 GO:GO:0003676
GO:GO:0010212 GO:GO:0004527 CTD:64782 HOGENOM:HOG000182422
HOVERGEN:HBG100435 InterPro:IPR013520 SUPFAM:SSF53098 EMBL:CR857587
RefSeq:NP_001124869.1 UniGene:Pab.10699 ProteinModelPortal:Q5REE2
SMR:Q5REE2 GeneID:100171731 KEGG:pon:100171731 Uniprot:Q5REE2
Length = 325
Score = 181 (68.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 53/159 (33%), Positives = 85/159 (53%)
Query: 8 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLV 63
A+DCEMV G G L R +V + V D+ ++PE + DYR+ +G+T +
Sbjct: 112 AIDCEMV--GTGPRGRVSELARCSIVSYHGDVLYDKYIRPEMPIVDYRTRWSGITRQHMC 169
Query: 64 -GVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDE--- 117
+ +A QK + KLL G ++VGH+L+ND + LK HPR DT+ + ++ E
Sbjct: 170 KAIPFQVA--QKEILKLLK-GKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSEPSL 226
Query: 118 --YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
R SL +L +L +I+ H+ ++DA+ AM+L
Sbjct: 227 HIRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMEL 265
>UNIPROTKB|F1RHI9 [details] [associations]
symbol:ISG20L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0005634 GO:GO:0003676
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 OMA:GTGPKGH EMBL:CU582900
RefSeq:XP_001924782.1 UniGene:Ssc.54513 Ensembl:ENSSSCT00000007088
GeneID:100157573 KEGG:ssc:100157573 Uniprot:F1RHI9
Length = 343
Score = 178 (67.7 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 53/160 (33%), Positives = 86/160 (53%)
Query: 6 MYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 61
M A+DCEMV G +G L R +V+ N V DE + P + DYR+ +G+
Sbjct: 169 MVAIDCEMV--GTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQH 226
Query: 62 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTS---LIFKYVD 116
+V T + ++ K+L+ G I+VGH+++ND + L+ HP+ + DTS L+ + D
Sbjct: 227 MVNAT-PFKIARSQILKILT-GKIVVGHAIHNDFKALQYFHPKSLTRDTSHIPLLNRKAD 284
Query: 117 --EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
E SL L K +L +I+ + H+ ++DA A M+L
Sbjct: 285 CPENATMSLKRLTKKLLDRDIQVGKSGHSSVEDAQATMEL 324
>TAIR|locus:2066406 [details] [associations]
symbol:AT2G48100 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=RCA]
InterPro:IPR006055 InterPro:IPR007087 InterPro:IPR012337
InterPro:IPR015880 PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355
SMART:SM00479 Pfam:PF00929 EMBL:CP002685 GO:GO:0008270
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 EMBL:AC006072 EMBL:AF386965 EMBL:AY081469
IPI:IPI00546038 PIR:D84923 RefSeq:NP_001031560.1 RefSeq:NP_566124.1
RefSeq:NP_973715.1 UniGene:At.13478 ProteinModelPortal:Q9ZU79
SMR:Q9ZU79 EnsemblPlants:AT2G48100.1 EnsemblPlants:AT2G48100.2
EnsemblPlants:AT2G48100.3 GeneID:819422 KEGG:ath:AT2G48100
TAIR:At2g48100 InParanoid:Q9ZU79 OMA:MRLYKRM PhylomeDB:Q9ZU79
ProtClustDB:CLSN2917359 ArrayExpress:Q9ZU79 Genevestigator:Q9ZU79
Uniprot:Q9ZU79
Length = 344
Score = 178 (67.7 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 60/164 (36%), Positives = 86/164 (52%)
Query: 8 AVDCEMVLCEDGSEGLV----RLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLV 63
A+DCEMV G++G + +C+VD + V V+P V DYR EITGLT +DL
Sbjct: 134 ALDCEMV--GGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLK 191
Query: 64 GVTCSLAEIQKRMKKLLSNGT-------ILVGHSLNNDLEVLKLDHPRVI--DTSLIFKY 114
L +++R+ L G +LVGH L +D+ LKL++P + DT+ KY
Sbjct: 192 D-GMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTA---KY 247
Query: 115 VDEYRR----PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
V + SL L KS LGY+I+ G H +D +AM+L
Sbjct: 248 VPLMKTNLVSQSLKYLTKSYLGYKIQC-GK-HEVYEDCVSAMRL 289
>MGI|MGI:2140076 [details] [associations]
symbol:Isg20l2 "interferon stimulated exonuclease gene
20-like 2" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 MGI:MGI:2140076
GO:GO:0005730 GO:GO:0003676 GO:GO:0042254 GO:GO:0004527
GO:GO:0090305 eggNOG:COG0847 HOGENOM:HOG000182422
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00520000055542
KO:K01175 CTD:81875 HOVERGEN:HBG107986 OrthoDB:EOG4H4641
EMBL:AK053778 EMBL:AK155979 EMBL:BC098326 IPI:IPI00222565
RefSeq:NP_808331.1 UniGene:Mm.45744 ProteinModelPortal:Q3U1G5
SMR:Q3U1G5 PhosphoSite:Q3U1G5 PaxDb:Q3U1G5 PRIDE:Q3U1G5
Ensembl:ENSMUST00000055984 GeneID:229504 KEGG:mmu:229504
UCSC:uc008ptj.1 InParanoid:Q4KMV7 NextBio:379467 Bgee:Q3U1G5
CleanEx:MM_ISG20L2 Genevestigator:Q3U1G5 Uniprot:Q3U1G5
Length = 368
Score = 178 (67.7 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 53/160 (33%), Positives = 87/160 (54%)
Query: 6 MYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 61
M A+DCEMV G +G L R +V+ N V DE V P + +YR+ +G+
Sbjct: 194 MVAIDCEMV--GTGPKGRVSSLARCSIVNYNGDVLYDEYVLPPCYIVNYRTRWSGIRKCH 251
Query: 62 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTS---LIFKYVD 116
+V T + ++ K+LS G +++GH+++ND + L+ HP+ + DTS L+ + D
Sbjct: 252 MVNAT-PFKTARSQILKILS-GKVVIGHAIHNDYKALQYFHPKSLTRDTSRIPLLNRKAD 309
Query: 117 --EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
E SL +L K +L +I+ T H+ ++DA A M+L
Sbjct: 310 CPENVTLSLKHLTKKLLSRDIQVGNTGHSSVEDAQATMEL 349
>MGI|MGI:1915298 [details] [associations]
symbol:Aen "apoptosis enhancing nuclease" species:10090 "Mus
musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=ISO] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0010212 "response to
ionizing radiation" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=ISO]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
MGI:MGI:1915298 GO:GO:0005654 GO:GO:0005730 GO:GO:0042771
GO:GO:0003676 GO:GO:0010212 GO:GO:0004527 CTD:64782 eggNOG:COG0847
HOGENOM:HOG000182422 HOVERGEN:HBG100435 OMA:HKRKSRQ
OrthoDB:EOG4P8FJM InterPro:IPR013520 SUPFAM:SSF53098 EMBL:AK090056
EMBL:AK012555 EMBL:AK031972 EMBL:AK165708 EMBL:AK166806
EMBL:AK167042 EMBL:AK167658 EMBL:BC022614 IPI:IPI00857428
IPI:IPI00990849 RefSeq:NP_001156411.1 RefSeq:NP_080807.3
UniGene:Mm.34109 ProteinModelPortal:Q9CZI9 SMR:Q9CZI9
PhosphoSite:Q9CZI9 PRIDE:Q9CZI9 Ensembl:ENSMUST00000107421
Ensembl:ENSMUST00000107423 Ensembl:ENSMUST00000107425 GeneID:68048
KEGG:mmu:68048 UCSC:uc009hxp.1 UCSC:uc009hxq.1
GeneTree:ENSGT00520000055542 InParanoid:Q9CZI9 NextBio:326308
Bgee:Q9CZI9 Genevestigator:Q9CZI9 Uniprot:Q9CZI9
Length = 336
Score = 176 (67.0 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 53/159 (33%), Positives = 85/159 (53%)
Query: 8 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL- 62
A+DCEMV G +G L R VV + V D+ ++PE + DYR+ +G+T +
Sbjct: 111 AIDCEMV--GTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMH 168
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDE--- 117
+ +A QK + KLL G ++VGH+L+ND + LK HPR DT+ + + +
Sbjct: 169 KAIPFQVA--QKEILKLLK-GKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNLLSQPSS 225
Query: 118 --YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
R SL +L ++L +I+ H+ ++DA AM+L
Sbjct: 226 LIRTRVSLKDLALNLLHKKIQVGHQGHSSVEDAMTAMEL 264
>CGD|CAL0006310 [details] [associations]
symbol:orf19.4948 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
[GO:0034476 "U5 snRNA 3'-end processing" evidence=IEA] [GO:0000467
"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
CGD:CAL0006310 Pfam:PF00929 GO:GO:0005634 GO:GO:0005737
GO:GO:0003676 GO:GO:0004527 GO:GO:0090305 eggNOG:COG0847
InterPro:IPR013520 SUPFAM:SSF53098 EMBL:AACQ01000010
EMBL:AACQ01000009 GO:GO:0006364 RefSeq:XP_722159.1
RefSeq:XP_722272.1 ProteinModelPortal:Q5AL29 STRING:Q5AL29
GeneID:3636061 GeneID:3636164 KEGG:cal:CaO19.12413
KEGG:cal:CaO19.4948 Uniprot:Q5AL29
Length = 404
Score = 178 (67.7 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 46/161 (28%), Positives = 87/161 (54%)
Query: 9 VDCEMVLCEDGSEGLVRLCVVDR-NLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTC 67
+DCEM G E L+R+ +D K +D +KP + D+ + +G+ +L
Sbjct: 244 IDCEMGFTTKGFE-LMRITAIDYFTSKTVLDIFIKPIGEIVDFNTRYSGI--HELTDDFL 300
Query: 68 SLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIF--KY-VDEYRRPSLY 124
S + +++ +++ + TIL+GH L ND+ ++L H +IDTS++F K+ RR SL
Sbjct: 301 SWEQSMEKLGEIMDSETILIGHGLENDMNAMRLIHENIIDTSILFPNKWKTGPTRRWSLK 360
Query: 125 NLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDN 165
+L L I+ G +C +D+ AA+ +V +++++ +
Sbjct: 361 DLAFEFLSRRIQT-GEHDSC-EDSIAAIDIVKYFVKKQLQS 399
>RGD|1359413 [details] [associations]
symbol:Isg20l2 "interferon stimulated exonuclease gene 20-like
2" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=ISO] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 RGD:1359413 GO:GO:0005730 GO:GO:0003676
GO:GO:0042254 GO:GO:0004527 GO:GO:0090305 eggNOG:COG0847
HOGENOM:HOG000182422 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 CTD:81875 HOVERGEN:HBG107986
OrthoDB:EOG4H4641 EMBL:BC079314 IPI:IPI00373225
RefSeq:NP_001007742.1 UniGene:Rn.56954 ProteinModelPortal:Q6AXU3
PRIDE:Q6AXU3 Ensembl:ENSRNOT00000015471 GeneID:361977
KEGG:rno:361977 UCSC:RGD:1359413 InParanoid:Q6AXU3 OMA:ESGARTF
NextBio:678262 Genevestigator:Q6AXU3 Uniprot:Q6AXU3
Length = 369
Score = 177 (67.4 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 52/160 (32%), Positives = 88/160 (55%)
Query: 6 MYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 61
M A+DCEMV G +G L R +V+ N V DE ++P + DYR+ +G+
Sbjct: 195 MVAIDCEMV--GTGPKGRVSSLARCSIVNYNGDVLYDEYIRPPCYIVDYRTRWSGIRKCH 252
Query: 62 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTS---LIFKYVD 116
+V T + ++ K+LS G ++VGH+++ND + L+ HP+ + DTS L+ + D
Sbjct: 253 MVNAT-PFKTARSQILKILS-GKVVVGHAIHNDYKALQYFHPKSLTRDTSQIPLLNRKAD 310
Query: 117 --EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
E SL +L K +L +I+ + H+ ++DA A ++L
Sbjct: 311 CPENVTLSLKHLTKKLLSRDIQTGLSGHSSVEDAQATLEL 350
>UNIPROTKB|Q2YDK1 [details] [associations]
symbol:ISG20L2 "Interferon-stimulated 20 kDa
exonuclease-like 2" species:9913 "Bos taurus" [GO:0005730
"nucleolus" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0005730
GO:GO:0003676 GO:GO:0042254 GO:GO:0004527 GO:GO:0090305
eggNOG:COG0847 HOGENOM:HOG000182422 InterPro:IPR013520
SUPFAM:SSF53098 GeneTree:ENSGT00520000055542 EMBL:BC110186
IPI:IPI00711321 RefSeq:NP_001039682.1 UniGene:Bt.80589
ProteinModelPortal:Q2YDK1 SMR:Q2YDK1 PRIDE:Q2YDK1
Ensembl:ENSBTAT00000001989 GeneID:515980 KEGG:bta:515980 CTD:81875
HOVERGEN:HBG107986 InParanoid:Q2YDK1 OMA:GTGPKGH OrthoDB:EOG4H4641
NextBio:20872080 Uniprot:Q2YDK1
Length = 349
Score = 176 (67.0 bits), Expect = 6.8e-11, P = 6.8e-11
Identities = 52/160 (32%), Positives = 87/160 (54%)
Query: 6 MYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 61
M A+DCEMV G +G L R +V+ + V DE + P + DYR+ +G+
Sbjct: 175 MVAIDCEMV--GTGPKGHVSSLARCSIVNYDGDVLYDEYILPPCHIVDYRTRWSGIRKQH 232
Query: 62 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTS---LIFKYVD 116
+V T + ++ K+L+ G I+VGH+++ND + L+ HP+ + DTS L+ + D
Sbjct: 233 MVNAT-PFKIARNQILKILA-GKIVVGHAIHNDFKALQYIHPKSLTRDTSHIPLLNRKAD 290
Query: 117 --EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
E SL +L K +L +I+ + H+ ++DA A M+L
Sbjct: 291 CPENATMSLKSLTKKLLNRDIQAGKSGHSSVEDAQATMEL 330
>UNIPROTKB|J9PA78 [details] [associations]
symbol:AEN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 CTD:64782 InterPro:IPR013520
SUPFAM:SSF53098 GeneTree:ENSGT00520000055542 EMBL:AAEX03002316
EMBL:AAEX03002317 RefSeq:XP_545846.2 Ensembl:ENSCAFT00000047692
GeneID:488728 KEGG:cfa:488728 Uniprot:J9PA78
Length = 324
Score = 174 (66.3 bits), Expect = 9.1e-11, P = 9.1e-11
Identities = 57/181 (31%), Positives = 94/181 (51%)
Query: 8 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL- 62
A+DCEMV G G L R VV + V D+ ++PE + DYR+ +G+T +
Sbjct: 112 AIDCEMV--GTGPRGRVSELARCSVVSYHGDVLYDKYIRPEMPIVDYRTRWSGVTRQHMR 169
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDE--- 117
+ +A QK + KLL G ++VGH+L+ND + LK HPR DT+ + + +
Sbjct: 170 KAIPFQVA--QKEILKLLK-GKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNLLHQPGL 226
Query: 118 --YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAII---ERRVDNAVPLLQE 172
R SL +L +L +I+ H+ ++DA+ AM+L + E++ +++P E
Sbjct: 227 HTRTRVSLKDLALQLLHKKIQAGQHGHSSVEDATTAMELYRLVEVQWEQQQASSLPPRPE 286
Query: 173 D 173
D
Sbjct: 287 D 287
>RGD|1305051 [details] [associations]
symbol:Aen "apoptosis enhancing nuclease" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA;ISO;ISS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA;ISO;ISS] [GO:0005730 "nucleolus" evidence=IEA;ISO;ISS]
[GO:0010212 "response to ionizing radiation" evidence=IEA;ISO;ISS]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IEA;ISO;ISS]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
RGD:1305051 GO:GO:0005654 GO:GO:0005730 GO:GO:0042771 EMBL:CH473980
GO:GO:0003676 GO:GO:0010212 GO:GO:0004527 CTD:64782 eggNOG:COG0847
HOGENOM:HOG000182422 HOVERGEN:HBG100435 OrthoDB:EOG4P8FJM
InterPro:IPR013520 SUPFAM:SSF53098 GeneTree:ENSGT00520000055542
EMBL:BC166435 IPI:IPI00365766 RefSeq:NP_001101957.1
UniGene:Rn.46887 ProteinModelPortal:B2GUW6 SMR:B2GUW6 PRIDE:B2GUW6
Ensembl:ENSRNOT00000064438 GeneID:361594 KEGG:rno:361594
UCSC:RGD:1305051 NextBio:676841 Genevestigator:B2GUW6
Uniprot:B2GUW6
Length = 332
Score = 174 (66.3 bits), Expect = 9.9e-11, P = 9.9e-11
Identities = 52/159 (32%), Positives = 86/159 (54%)
Query: 8 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL- 62
A+DCEMV G +G L R VV + V D+ ++PE + DYR+ +G+T +
Sbjct: 107 AIDCEMV--GTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMH 164
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLIFKYVDE--- 117
+ +A QK + KLL G ++VGH+L+ND + LK HP ++ DT+ + + +
Sbjct: 165 KAIPFQVA--QKEILKLLK-GKVVVGHALHNDFQALKYVHPGSQIRDTTYVPNLLSQPSS 221
Query: 118 --YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
R SL +L ++L +I+ H+ ++DA AM+L
Sbjct: 222 LTRARVSLKDLALNLLHKKIQVGHHGHSSVEDAMTAMEL 260
>UNIPROTKB|F1PWV6 [details] [associations]
symbol:AEN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IEA] [GO:0010212 "response to ionizing radiation"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
GO:GO:0005654 GO:GO:0005730 GO:GO:0042771 GO:GO:0003676
GO:GO:0010212 GO:GO:0004527 OMA:HKRKSRQ InterPro:IPR013520
SUPFAM:SSF53098 GeneTree:ENSGT00520000055542 EMBL:AAEX03002316
EMBL:AAEX03002317 Ensembl:ENSCAFT00000018286 Uniprot:F1PWV6
Length = 336
Score = 174 (66.3 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 57/181 (31%), Positives = 94/181 (51%)
Query: 8 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL- 62
A+DCEMV G G L R VV + V D+ ++PE + DYR+ +G+T +
Sbjct: 112 AIDCEMV--GTGPRGRVSELARCSVVSYHGDVLYDKYIRPEMPIVDYRTRWSGVTRQHMR 169
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDE--- 117
+ +A QK + KLL G ++VGH+L+ND + LK HPR DT+ + + +
Sbjct: 170 KAIPFQVA--QKEILKLLK-GKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNLLHQPGL 226
Query: 118 --YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAII---ERRVDNAVPLLQE 172
R SL +L +L +I+ H+ ++DA+ AM+L + E++ +++P E
Sbjct: 227 HTRTRVSLKDLALQLLHKKIQAGQHGHSSVEDATTAMELYRLVEVQWEQQQASSLPPRPE 286
Query: 173 D 173
D
Sbjct: 287 D 287
>UNIPROTKB|F1MZX4 [details] [associations]
symbol:LOC614749 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0005654
GO:GO:0005730 GO:GO:0042771 GO:GO:0003676 GO:GO:0010212
GO:GO:0004527 OMA:HKRKSRQ InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 EMBL:DAAA02052106 IPI:IPI00714615
Ensembl:ENSBTAT00000023454 Uniprot:F1MZX4
Length = 325
Score = 173 (66.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 53/159 (33%), Positives = 84/159 (52%)
Query: 8 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL- 62
A+DCEMV G G L R VV + +V D+ ++PE + DYR+ +G+T +
Sbjct: 112 AIDCEMV--GTGPRGRVSELARCSVVSYHGEVLYDKYIRPEMPIVDYRTRWSGITRQHMR 169
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDE--- 117
+ +A QK + KLL G ++VGH+L+ND + LK HPR DT+ + + +
Sbjct: 170 KAIPFQVA--QKEILKLLK-GKVVVGHALHNDFQALKYIHPRGQTRDTTSVPSLLSQPGL 226
Query: 118 --YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
R SL +L +L +I+ H+ ++DA AM+L
Sbjct: 227 HVRNRVSLKDLALQLLHKKIQVGQHGHSSVEDAVTAMEL 265
>UNIPROTKB|F8WG03 [details] [associations]
symbol:Aen "Apoptosis-enhancing nuclease" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 RGD:1305051 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
InterPro:IPR013520 SUPFAM:SSF53098 IPI:IPI00949441
Ensembl:ENSRNOT00000024962 OMA:GMVPREV Uniprot:F8WG03
Length = 355
Score = 174 (66.3 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 52/159 (32%), Positives = 86/159 (54%)
Query: 8 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL- 62
A+DCEMV G +G L R VV + V D+ ++PE + DYR+ +G+T +
Sbjct: 130 AIDCEMV--GTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMH 187
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLIFKYVDE--- 117
+ +A QK + KLL G ++VGH+L+ND + LK HP ++ DT+ + + +
Sbjct: 188 KAIPFQVA--QKEILKLLK-GKVVVGHALHNDFQALKYVHPGSQIRDTTYVPNLLSQPSS 244
Query: 118 --YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
R SL +L ++L +I+ H+ ++DA AM+L
Sbjct: 245 LTRARVSLKDLALNLLHKKIQVGHHGHSSVEDAMTAMEL 283
>UNIPROTKB|Q9H9L3 [details] [associations]
symbol:ISG20L2 "Interferon-stimulated 20 kDa
exonuclease-like 2" species:9606 "Homo sapiens" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IDA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 GO:GO:0005634 GO:GO:0005730 GO:GO:0003676
GO:GO:0042254 GO:GO:0004527 GO:GO:0090305 eggNOG:COG0847
HOGENOM:HOG000182422 InterPro:IPR013520 SUPFAM:SSF53098
EMBL:CH471121 KO:K01175 EMBL:AL590666 CTD:81875 HOVERGEN:HBG107986
OMA:GTGPKGH OrthoDB:EOG4H4641 EMBL:AY391837 EMBL:AK022733
EMBL:BC000575 IPI:IPI00008963 RefSeq:NP_112242.1 UniGene:Hs.301904
ProteinModelPortal:Q9H9L3 IntAct:Q9H9L3 MINT:MINT-1457372
STRING:Q9H9L3 PhosphoSite:Q9H9L3 DMDM:42559527 SWISS-2DPAGE:Q9H9L3
PaxDb:Q9H9L3 PeptideAtlas:Q9H9L3 PRIDE:Q9H9L3 DNASU:81875
Ensembl:ENST00000313146 Ensembl:ENST00000368219 GeneID:81875
KEGG:hsa:81875 UCSC:uc001fps.1 GeneCards:GC01M156691
HGNC:HGNC:25745 HPA:HPA028005 MIM:611930 neXtProt:NX_Q9H9L3
PharmGKB:PA142671650 InParanoid:Q9H9L3 PhylomeDB:Q9H9L3
ChiTaRS:ISG20L2 GenomeRNAi:81875 NextBio:72218 Bgee:Q9H9L3
CleanEx:HS_ISG20L2 Genevestigator:Q9H9L3 GermOnline:ENSG00000143319
Uniprot:Q9H9L3
Length = 353
Score = 173 (66.0 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 53/160 (33%), Positives = 86/160 (53%)
Query: 6 MYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 61
M A+DCEMV G +G L R +V+ N V DE + P + DYR+ +G+
Sbjct: 179 MVAIDCEMV--GTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQH 236
Query: 62 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLI---FKYVD 116
+V T + ++ K+L+ G I+VGH+++ND + L+ HP+ + DTS I + D
Sbjct: 237 MVNAT-PFKIARGQILKILT-GKIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKAD 294
Query: 117 --EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
E SL +L K +L +I+ + H+ ++DA A M+L
Sbjct: 295 CPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMEL 334
>UNIPROTKB|H9L3P1 [details] [associations]
symbol:H9L3P1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 EMBL:AADN02034596 EMBL:AADN02034597
Ensembl:ENSGALT00000040830 Uniprot:H9L3P1
Length = 327
Score = 171 (65.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 49/158 (31%), Positives = 80/158 (50%)
Query: 6 MYAVDCEMVLCEDG--SEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLV 63
+ A+DCEMV G + L R +V V D V+P + + DYR+ +G+ +V
Sbjct: 151 LVAIDCEMVGTGPGGCTSSLARCSIVGYEGDVLYDSYVRPTEPIVDYRTRWSGIRKKHMV 210
Query: 64 GVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLIFKYVDEYRRP 121
+ Q+ + K+LS G ++VGH+++ND + LK HP+ + DTS I + P
Sbjct: 211 NAV-PFCKAQREILKILS-GKVVVGHAVHNDFKALKYSHPKELTRDTSKIPLLNQKGGFP 268
Query: 122 -----SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
SL L K +L +I+ + H ++DA M+L
Sbjct: 269 ENVAISLKRLAKELLHKDIQVGKSGHCSVEDARTTMEL 306
>UNIPROTKB|H9L3P2 [details] [associations]
symbol:H9L3P2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 EMBL:AADN02034596 EMBL:AADN02034597
Ensembl:ENSGALT00000040831 OMA:PTEPIVD Uniprot:H9L3P2
Length = 328
Score = 171 (65.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 49/158 (31%), Positives = 80/158 (50%)
Query: 6 MYAVDCEMVLCEDG--SEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLV 63
+ A+DCEMV G + L R +V V D V+P + + DYR+ +G+ +V
Sbjct: 152 LVAIDCEMVGTGPGGCTSSLARCSIVGYEGDVLYDSYVRPTEPIVDYRTRWSGIRKKHMV 211
Query: 64 GVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLIFKYVDEYRRP 121
+ Q+ + K+LS G ++VGH+++ND + LK HP+ + DTS I + P
Sbjct: 212 NAV-PFCKAQREILKILS-GKVVVGHAVHNDFKALKYSHPKELTRDTSKIPLLNQKGGFP 269
Query: 122 -----SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
SL L K +L +I+ + H ++DA M+L
Sbjct: 270 ENVAISLKRLAKELLHKDIQVGKSGHCSVEDARTTMEL 307
>UNIPROTKB|E2QS77 [details] [associations]
symbol:ISG20L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0005634
GO:GO:0003676 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 CTD:81875 OMA:GTGPKGH
EMBL:AAEX03005314 RefSeq:XP_547530.2 Ensembl:ENSCAFT00000026521
GeneID:490409 KEGG:cfa:490409 NextBio:20863435 Uniprot:E2QS77
Length = 348
Score = 170 (64.9 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 53/164 (32%), Positives = 87/164 (53%)
Query: 2 TSNIMYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGL 57
T M A+DCEMV G +G L R +V+ + V DE + P + DYR+ +G+
Sbjct: 170 TPKKMVAIDCEMV--GTGPKGHVSSLARCSIVNYHGDVLYDEYILPPCHIVDYRTRWSGI 227
Query: 58 TADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLI---F 112
+V T + ++ K+L+ G I+VGH+++ND + L+ HP+ + DTS I
Sbjct: 228 RKQHMVNAT-PFKVARGQILKILT-GKIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLN 285
Query: 113 KYVD--EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
+ D E SL +L K +L +I+ + H+ ++DA A M+L
Sbjct: 286 RKADCPENATMSLKSLTKKLLNRDIQVGKSGHSSVEDAQATMEL 329
>SGD|S000004097 [details] [associations]
symbol:REX3 "RNA exonuclease" species:4932 "Saccharomyces
cerevisiae" [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IMP] [GO:0043628 "ncRNA
3'-end processing" evidence=IMP] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000467
"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IGI] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IGI] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
SGD:S000004097 Pfam:PF00929 GO:GO:0005634 GO:GO:0005737
GO:GO:0003676 EMBL:BK006945 eggNOG:COG0847 InterPro:IPR013520
SUPFAM:SSF53098 EMBL:X89514 EMBL:U53878 EMBL:U53876 GO:GO:0000175
GO:GO:0000467 GO:GO:0034476 OrthoDB:EOG48KVM8 EMBL:Z73279
EMBL:Z73280 PIR:S64944 RefSeq:NP_013208.1 ProteinModelPortal:Q12090
SMR:Q12090 STRING:Q12090 EnsemblFungi:YLR107W GeneID:850797
KEGG:sce:YLR107W CYGD:YLR107w HOGENOM:HOG000154095 OMA:DCEMAFT
NextBio:967014 Genevestigator:Q12090 GermOnline:YLR107W
Uniprot:Q12090
Length = 404
Score = 171 (65.3 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 48/154 (31%), Positives = 83/154 (53%)
Query: 4 NIMYAVDCEMVLCEDGSEGLVRLCVVDRNL-KVTIDELVKPEKAVADYRSEITGLTADDL 62
N++ ++DCEM G E ++RL +VD K D +++P + D S+ +G+ D
Sbjct: 242 NVL-SLDCEMAFTSLGYE-MIRLTIVDFFTGKTLFDHVIQPIGDIVDLNSDFSGVHEIDR 299
Query: 63 VGVTCSLAEIQKRMKK-LLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRP 121
+ + + L++ +IL+GH L NDL V++L H +VIDT++++ +++
Sbjct: 300 TNCPTYKEALDVFLSENLINKNSILIGHGLENDLNVMRLFHNKVIDTAILYSRT-KFK-V 357
Query: 122 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLV 155
SL NL VL +I+ G H+ DA A M +V
Sbjct: 358 SLKNLAFEVLSRKIQN-GE-HDSSQDAIATMDVV 389
>UNIPROTKB|F1SRT3 [details] [associations]
symbol:AEN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0005654
GO:GO:0005730 GO:GO:0042771 GO:GO:0003676 GO:GO:0010212
GO:GO:0004527 OMA:HKRKSRQ InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 EMBL:FP017226 RefSeq:XP_003121906.1
UniGene:Ssc.43796 Ensembl:ENSSSCT00000005624 GeneID:100522657
KEGG:ssc:100522657 Uniprot:F1SRT3
Length = 325
Score = 168 (64.2 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 53/159 (33%), Positives = 82/159 (51%)
Query: 8 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL- 62
A+DCEMV G G L R VV V D+ ++PE + DYR+ +G+T +
Sbjct: 112 AIDCEMV--GTGPRGRVSELARCSVVSYYGDVLYDKYIRPEMPIVDYRTRWSGITRQHMR 169
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDE--- 117
+ +A QK + KLL G ++VGH+L+ND + LK HPR DT+ + + +
Sbjct: 170 KAIPFQVA--QKEILKLLK-GKVVVGHALHNDFQALKYVHPRGQTRDTTYVPNLLSQPGL 226
Query: 118 --YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
R SL +L +L +I+ H+ ++DA AM+L
Sbjct: 227 HTRTRVSLKDLALQLLHKKIQVGQHGHSSVEDAVTAMEL 265
>MGI|MGI:1928895 [details] [associations]
symbol:Isg20 "interferon-stimulated protein" species:10090
"Mus musculus" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISO] [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006401 "RNA catabolic process" evidence=ISO] [GO:0008310
"single-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISO] [GO:0008859 "exoribonuclease II activity"
evidence=IEA] [GO:0009615 "response to virus" evidence=ISO]
[GO:0016605 "PML body" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
MGI:MGI:1928895 GO:GO:0046872 GO:GO:0016605 GO:GO:0045087
GO:GO:0051607 GO:GO:0003723 GO:GO:0006401 eggNOG:COG0847
HOGENOM:HOG000182422 InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 GO:GO:0006364 GO:GO:0000175
GO:GO:0000738 GO:GO:0008310 GO:GO:0008859 CTD:3669 KO:K12579
OrthoDB:EOG4M91SN EMBL:AF217484 EMBL:AK008139 EMBL:AK008171
EMBL:AK008353 EMBL:BC022751 IPI:IPI00123340 IPI:IPI00467269
RefSeq:NP_001106999.1 RefSeq:NP_065608.2 UniGene:Mm.322843
ProteinModelPortal:Q9JL16 SMR:Q9JL16 STRING:Q9JL16
PhosphoSite:Q9JL16 PaxDb:Q9JL16 PRIDE:Q9JL16
Ensembl:ENSMUST00000038142 Ensembl:ENSMUST00000118867
Ensembl:ENSMUST00000120331 Ensembl:ENSMUST00000121645 GeneID:57444
KEGG:mmu:57444 UCSC:uc009hxt.1 InParanoid:Q9JL16 OMA:LNFILIQ
NextBio:313851 Bgee:Q9JL16 CleanEx:MM_ISG20 Genevestigator:Q9JL16
GermOnline:ENSMUSG00000039236 Uniprot:Q9JL16
Length = 300
Score = 164 (62.8 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 47/137 (34%), Positives = 74/137 (54%)
Query: 8 AVDCEMV-LCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 66
A+DCEMV L GL R +V+ + V D+ ++PE + DYR++++G+T +V T
Sbjct: 9 AMDCEMVGLGPQRVSGLARCSIVNIHGAVLYDKYIRPEGEITDYRTQVSGVTPQHMVRAT 68
Query: 67 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTS---LIFKY--VDEYR 119
E + + +LL G ++VGH L +D LK D + + DTS L++ + Y
Sbjct: 69 -PFGEARLEILQLLK-GKLVVGHDLKHDFNALKEDMSKYTIYDTSTDRLLWHEAKLQYYS 126
Query: 120 RPSLYNLCKSVLGYEIR 136
R SL LCK +L I+
Sbjct: 127 RVSLRLLCKRLLHKNIQ 143
>TAIR|locus:2086839 [details] [associations]
symbol:AT3G27970 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR006055 InterPro:IPR007087 InterPro:IPR012337
InterPro:IPR015880 PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355
SMART:SM00479 Pfam:PF00929 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0008270 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 EMBL:BT033110
EMBL:AB493636 IPI:IPI00533339 RefSeq:NP_189436.2 UniGene:At.50233
ProteinModelPortal:B3LFC1 SMR:B3LFC1 PaxDb:B3LFC1 PRIDE:B3LFC1
EnsemblPlants:AT3G27970.1 GeneID:822421 KEGG:ath:AT3G27970
TAIR:At3g27970 HOGENOM:HOG000237419 OMA:LPKVECA PhylomeDB:B3LFC1
ProtClustDB:CLSN2687545 Genevestigator:B3LFC1 Uniprot:B3LFC1
Length = 357
Score = 152 (58.6 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 57/184 (30%), Positives = 91/184 (49%)
Query: 8 AVDCEMVLC-EDGSEGL-VRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+ C+MV DGS L R+C+ D + V VKP AV YR E TG+ ++L
Sbjct: 137 ALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAVTSYRYETTGIRPENLRDA 196
Query: 66 TCSLAEIQKRMKKLLSNGT-------------ILVGHSLNNDLEVLKLDHPR--VIDTSL 110
L ++Q+++++ L NG ILVGH L++DL+ L+L++P + DT+
Sbjct: 197 M-PLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDLDRLQLEYPSSMIRDTA- 254
Query: 111 IFKYVDEYRRPSLYN----LCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAI-IERRVDN 165
KY + L N L ++ LGY++ G + +D A M+L + ++
Sbjct: 255 --KYPPLMKTSKLSNSLKYLTQAYLGYDVHF-GI-QDPYEDCVATMRLYTRMRYQKHKIE 310
Query: 166 AVPL 169
A PL
Sbjct: 311 AYPL 314
>UNIPROTKB|H0YMM4 [details] [associations]
symbol:ISG20 "Interferon-stimulated gene 20 kDa protein"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
HGNC:HGNC:6130 ChiTaRS:ISG20 EMBL:AC104259 Ensembl:ENST00000559876
Bgee:H0YMM4 Uniprot:H0YMM4
Length = 155
Score = 126 (49.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 47/155 (30%), Positives = 79/155 (50%)
Query: 3 SNIMYAVDCEMV-LCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 61
S + A+DCEMV L GL R +V+ + V D+ ++PE + DYR+ ++G+T
Sbjct: 4 SREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQH 63
Query: 62 LVGVT-CSLAEIQKRMKKLLSNGTILVGHSLNNDL-EVLKLDHPRVIDTSLIFKYVDEYR 119
+VG T ++A ++ +K+ +S TI S + L KLDH R + ++ +
Sbjct: 64 MVGATPFAVARLEA-LKEDMSGYTIY-DTSTDRLLWREAKLDHCRRVSLRVLS---ERLL 118
Query: 120 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
S+ N S+LG H+ ++DA A M+L
Sbjct: 119 HKSIQN---SLLG---------HSSVEDARATMEL 141
>UNIPROTKB|E1C018 [details] [associations]
symbol:AEN "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IEA] InterPro:IPR006055
InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 GO:GO:0005654
GO:GO:0005730 GO:GO:0042771 GO:GO:0003676 GO:GO:0010212
GO:GO:0004527 OMA:HKRKSRQ InterPro:IPR013520 SUPFAM:SSF53098
GeneTree:ENSGT00520000055542 EMBL:AADN02041516 IPI:IPI00577225
ProteinModelPortal:E1C018 Ensembl:ENSGALT00000010894
NextBio:20819091 Uniprot:E1C018
Length = 301
Score = 143 (55.4 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 52/162 (32%), Positives = 79/162 (48%)
Query: 4 NIMYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTA 59
N A+DCEMV G G L R +V + V D+ V P V D+R+ +G+T
Sbjct: 96 NKYVAIDCEMV--GTGPRGRQSELARCSIVSYDGDVIYDKYVLPLLPVVDFRTRWSGITK 153
Query: 60 DDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLIFKYVDE 117
+ A Q+ + K+L + I+VGH+++ND + LK HP R DTS I
Sbjct: 154 RHMESAIPFRAA-QEEILKILKD-RIVVGHAIHNDFQALKYFHPKERTRDTSRIPLLNQR 211
Query: 118 YRRP-----SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
P SL +L + +L +I+ H+ ++DA AM+L
Sbjct: 212 AGLPPGANASLKSLARHLLQKKIQVGCKGHSSVEDARTAMEL 253
>ASPGD|ASPL0000070457 [details] [associations]
symbol:AN4357 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR006055 InterPro:IPR007087 InterPro:IPR012337
InterPro:IPR015880 PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355
SMART:SM00479 Pfam:PF00929 GO:GO:0008270 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 eggNOG:COG0847 InterPro:IPR013520
SUPFAM:SSF53098 EMBL:BN001303 InterPro:IPR022755 Pfam:PF12171
EMBL:AACD01000075 RefSeq:XP_661961.1 ProteinModelPortal:Q5B523
EnsemblFungi:CADANIAT00006101 GeneID:2872156 KEGG:ani:AN4357.2
OrthoDB:EOG4B5SDQ Uniprot:Q5B523
Length = 560
Score = 146 (56.5 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 49/164 (29%), Positives = 89/164 (54%)
Query: 9 VDCEMV--LCEDGSE--GLVRLCVVD-RNLKVTIDELVKP--EKAVADYRSEITGLTADD 61
+DCEMV + + SE +VRL VD + +V ++ V+P ++ V ++R+ ++G+
Sbjct: 371 LDCEMVGVVGPNNSEVSEVVRLAAVDFLSGEVLVNTFVEPAADQRVINWRTRVSGVNKSL 430
Query: 62 LVGVTCSLAEIQ--KRMKKLL----SNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV 115
L + +Q + + LL TIL+GHSL+NDL VL + H R++D++++ +
Sbjct: 431 LSEMKKQGQTVQGWEAARDLLWMFVDKQTILIGHSLHNDLAVLGMVHQRIVDSAILTRDA 490
Query: 116 DEYRRPS---LYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 156
+ + L K+ +I+ G H+CL+D AA ++VL
Sbjct: 491 VAGAKEDCARVRKLAKTFFELDIQT-GKGHDCLEDTFAAREVVL 533
>TAIR|locus:2170533 [details] [associations]
symbol:AT5G40310 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00096 InterPro:IPR006055 InterPro:IPR007087
InterPro:IPR012337 InterPro:IPR015880 PROSITE:PS00028
PROSITE:PS50157 SMART:SM00355 SMART:SM00479 Pfam:PF00929
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008270 GO:GO:0003676
GO:GO:0005622 GO:GO:0004527 eggNOG:COG0847 InterPro:IPR013520
SUPFAM:SSF53098 EMBL:AB006702 HOGENOM:HOG000237419
ProtClustDB:CLSN2687545 IPI:IPI00536517 RefSeq:NP_198847.1
UniGene:At.55275 ProteinModelPortal:Q9FNE7 SMR:Q9FNE7
EnsemblPlants:AT5G40310.1 GeneID:834029 KEGG:ath:AT5G40310
TAIR:At5g40310 InParanoid:Q9FNE7 OMA:ITDESEN PhylomeDB:Q9FNE7
Genevestigator:Q9FNE7 Uniprot:Q9FNE7
Length = 348
Score = 134 (52.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 54/184 (29%), Positives = 88/184 (47%)
Query: 8 AVDCEMVLC-EDGSEGL-VRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+ C+MV DGS L R+C+ D + V VKP V +YR E+TG+ ++L
Sbjct: 128 ALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYRYEMTGIRPENLRDA 187
Query: 66 TCSLAEIQKRMKKLLSNGT-------------ILVGHSLNNDLEVLKLDHPR--VIDTSL 110
L Q+++++ L NG ILVGH L+N L+ L+L++ + DT+
Sbjct: 188 M-RLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQLEYSSSMIRDTAE 246
Query: 111 IFKYVDEYRRP-SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAI-IERRVDNAVP 168
+ + SL L ++ LGY+I G + +D A M+L + ++ A P
Sbjct: 247 YPPLMKSSKLSNSLKYLTQAYLGYDIHV-GI-QDPYEDCVATMRLYTRMRYQKHRAEAYP 304
Query: 169 LLQE 172
L +
Sbjct: 305 LASD 308
>UNIPROTKB|H3BLY5 [details] [associations]
symbol:ISG20 "Interferon-stimulated gene 20 kDa protein"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR012337 Pfam:PF00929 GO:GO:0003676
InterPro:IPR013520 SUPFAM:SSF53098 HGNC:HGNC:6130 ChiTaRS:ISG20
EMBL:AC104259 ProteinModelPortal:H3BLY5 SMR:H3BLY5
Ensembl:ENST00000379224 Bgee:H3BLY5 Uniprot:H3BLY5
Length = 87
Score = 111 (44.1 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 3 SNIMYAVDCEMV-LCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 61
S + A+DCEMV L GL R +V+ + V D+ ++PE + DYR+ ++G+T
Sbjct: 4 SREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQH 63
Query: 62 LVGVT 66
+VG T
Sbjct: 64 MVGAT 68
>ASPGD|ASPL0000071877 [details] [associations]
symbol:AN5013 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
[GO:0034476 "U5 snRNA 3'-end processing" evidence=IEA] [GO:0000467
"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
Pfam:PF00929 GO:GO:0005634 GO:GO:0005737 GO:GO:0003676
GO:GO:0004527 GO:GO:0090305 eggNOG:COG0847 InterPro:IPR013520
SUPFAM:SSF53098 EMBL:BN001303 EMBL:AACD01000084 GO:GO:0006364
RefSeq:XP_662617.1 ProteinModelPortal:Q5B367 GeneID:2872816
KEGG:ani:AN5013.2 HOGENOM:HOG000198400 OMA:FDCEMGY
OrthoDB:EOG4JMBZF Uniprot:Q5B367
Length = 638
Score = 116 (45.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 35/117 (29%), Positives = 59/117 (50%)
Query: 46 AVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRV 105
+ A +S ++ + + S A + + LL+ T L+GH+++NDL ++ HP V
Sbjct: 470 STAPTKSSAPSSSSPSQLQLVSSPAAARTLLFNLLTPSTPLIGHAIDNDLNACRIIHPTV 529
Query: 106 IDTSLIFKYVD---EYRRPSLYNLCKSVLGYEIRKKGTP----HNCLDDASAAMKLV 155
IDT++++ + YR SL L K L EI+ G H+ ++DA A LV
Sbjct: 530 IDTAILYPHPGGGLPYRM-SLRTLAKKHLDREIQTGGASGKQGHDSVEDALATGDLV 585
Score = 60 (26.2 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 10 DCEMVLCEDGSEGLVRLCVVD-RNLKVTIDELVKPEKAVADYRSEITGL 57
DCEM G E L+RL V K +D LV+P V D S +G+
Sbjct: 411 DCEMGYTTLGME-LIRLTAVSWPEGKKVLDVLVRPLGEVLDLNSRFSGV 458
>DICTYBASE|DDB_G0269694 [details] [associations]
symbol:pan2 "polyA specific ribonuclease subunit"
species:44689 "Dictyostelium discoideum" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004221 "ubiquitin thiolesterase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0031251 "PAN complex" evidence=ISS] [GO:0006397
"mRNA processing" evidence=ISS] [GO:0006301 "postreplication
repair" evidence=ISS] [GO:0004535 "poly(A)-specific ribonuclease
activity" evidence=ISS] InterPro:IPR017986 InterPro:IPR001394
InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR015943
PROSITE:PS50235 SMART:SM00479 dictyBase:DDB_G0269694 Pfam:PF00929
EMBL:AAFI02000005 GenomeReviews:CM000150_GR Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0006397 GO:GO:0003676 GO:GO:0006511
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0004221
GO:GO:0006301 GO:GO:0004535 KO:K12571 GO:GO:0031251 OMA:SKFGIED
RefSeq:XP_646196.2 ProteinModelPortal:Q55DD5
EnsemblProtists:DDB0237517 GeneID:8617149 KEGG:ddi:DDB_G0269694
InParanoid:Q55DD5 Uniprot:Q55DD5
Length = 1536
Score = 133 (51.9 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 39/158 (24%), Positives = 77/158 (48%)
Query: 10 DCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL-----VG 64
D + V+ + G+ L R+ ++ N + D+ ++ + V DY + +G+ DL
Sbjct: 1290 DGKRVIIQPGNFSLARVSIIRENGEAFFDDYIQSIEPVTDYLTRFSGINPGDLDPKLSTK 1349
Query: 65 VTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLIFKYVDEYRRPS 122
+L +++ L+ G VGH L D ++ + P ++IDT +F+ ++ R+ S
Sbjct: 1350 NVITLKSCYLKLRYLVDQGVKFVGHGLKKDFRIINIYVPPNQIIDTVELFQLKNQ-RKLS 1408
Query: 123 LYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIE 160
L L +L +I+ + H ++DA AM L A ++
Sbjct: 1409 LRFLAYILLKIDIQSE--THCSVEDAKTAMDLYKAYLQ 1444
>WB|WBGene00017951 [details] [associations]
symbol:panl-2 species:6239 "Caenorhabditis elegans"
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR015943
SMART:SM00320 SMART:SM00479 Pfam:PF00929 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 EMBL:FO080392
KO:K12571 GeneTree:ENSGT00390000013978 PIR:T16217
RefSeq:NP_498519.1 ProteinModelPortal:P53015 SMR:P53015
STRING:P53015 PaxDb:P53015 EnsemblMetazoa:F31E3.4 GeneID:175974
KEGG:cel:CELE_F31E3.4 UCSC:F31E3.4 CTD:175974 WormBase:F31E3.4
HOGENOM:HOG000020895 InParanoid:P53015 OMA:CITCELH NextBio:890566
Uniprot:P53015
Length = 1131
Score = 129 (50.5 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 43/143 (30%), Positives = 69/143 (48%)
Query: 27 CVVDRNLKVTIDELVK--PEKAVADYRSEITGLTADDLVGVTCS--LAEIQK---RMKKL 79
CV ++ D+ VK + V DY ++ +G+ DL T L ++ RM L
Sbjct: 940 CVDSTGERIIFDDHVKLTDDVEVVDYLTKFSGIVKADLCPTTSEKYLTTHKRLLLRMHVL 999
Query: 80 LSNGTILVGHSLNNDLEVLKLD--HPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRK 137
+ G VGH+L+ND VL + ++IDT + + + R SL L K +LG I+
Sbjct: 1000 IQRGVTFVGHALHNDFTVLNVHVAESQIIDTVTLMR-LGTQRMLSLQFLVKEILGETIQM 1058
Query: 138 KGTPHNCLDDASAAMKLVLAIIE 160
+ H+ + DA A+KL +E
Sbjct: 1059 EA--HDSVVDARYALKLYRKYLE 1079
>POMBASE|SPAC22G7.04 [details] [associations]
symbol:ubp13 "ubiquitin C-terminal hydrolase,
poly(A)-specific ribonuclease complex subunit Pan2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0004221 "ubiquitin
thiolesterase activity" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=ISO] [GO:0004843
"ubiquitin-specific protease activity" evidence=ISM] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0006301 "postreplication repair"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=ISO]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0031251 "PAN complex" evidence=ISO]
InterPro:IPR017986 InterPro:IPR001394 InterPro:IPR001680
InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR015943
PROSITE:PS50082 PROSITE:PS50235 PROSITE:PS50294 SMART:SM00320
SMART:SM00479 PomBase:SPAC22G7.04 Pfam:PF00929 EMBL:CU329670
GenomeReviews:CU329670_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 GO:GO:0006397 GO:GO:0003676 GO:GO:0006511
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0004843
GO:GO:0004221 GO:GO:0006301 GO:GO:0004535 HOGENOM:HOG000230585
OrthoDB:EOG44F9J8 MEROPS:C19.978 PIR:T11614 RefSeq:NP_593053.2
STRING:Q09798 EnsemblFungi:SPAC22G7.04.1 GeneID:2541684
NextBio:20802777 GO:GO:0031251 Uniprot:Q09798
Length = 1088
Score = 127 (49.8 bits), Expect = 0.00013, P = 0.00013
Identities = 41/126 (32%), Positives = 63/126 (50%)
Query: 37 IDELVKPEKAVADYRSEITGLTADDL------VGVTCSLAEIQKRMKKLLSNGTILVGHS 90
ID+ V + V DY +E +G+ DL V L K+++ L++ G I VGH
Sbjct: 910 IDDYVATDDKVTDYLTEYSGIHPGDLDPDRSPYNVV-PLKVAYKKLRLLVNAGCIFVGHG 968
Query: 91 LNNDLEVLKLDHP--RVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDA 148
L D ++ L P +V+DT +F R+ SL L +L EI+ T H+ ++DA
Sbjct: 969 LQKDFRIINLLVPPEQVVDTVDLFFLSSRQRKLSLKFLAWYLLDEEIQL--TEHDSIEDA 1026
Query: 149 SAAMKL 154
A+KL
Sbjct: 1027 LTALKL 1032
>FB|FBgn0033352 [details] [associations]
symbol:CG8232 species:7227 "Drosophila melanogaster"
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0004221 "ubiquitin thiolesterase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IGI]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR017986
InterPro:IPR001394 InterPro:IPR006055 InterPro:IPR012337
InterPro:IPR015943 PROSITE:PS50235 SMART:SM00479 Pfam:PF00929
EMBL:AE013599 Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003676
GO:GO:0005622 GO:GO:0006511 eggNOG:COG0847 InterPro:IPR013520
SUPFAM:SSF53098 GO:GO:0004221 GO:GO:0004535 GO:GO:0000289 KO:K12571
OMA:TQLHQDM GeneTree:ENSGT00390000013978 EMBL:BT031142
RefSeq:NP_610427.2 UniGene:Dm.11534 SMR:A1Z7K9 IntAct:A1Z7K9
STRING:A1Z7K9 EnsemblMetazoa:FBtr0088654 GeneID:35893
KEGG:dme:Dmel_CG8232 UCSC:CG8232-RA FlyBase:FBgn0033352
InParanoid:A1Z7K9 KO:K01072 OrthoDB:EOG4HT771 ChiTaRS:CG8232
GenomeRNAi:35893 NextBio:795685 Uniprot:A1Z7K9
Length = 1241
Score = 127 (49.8 bits), Expect = 0.00016, P = 0.00016
Identities = 42/148 (28%), Positives = 74/148 (50%)
Query: 37 IDELVKPEKAVADYRSEITGLTADDLVG------VTCSLAEIQKRMKKLLSNGTILVGHS 90
+D+ + ++ V DY ++ +G+ DL +T QK +K L+ G I VGH
Sbjct: 1086 MDDYISTQEKVVDYLTQFSGIKPGDLDANFSKKRLTALKYSYQK-LKYLVDVGVIFVGHG 1144
Query: 91 LNNDLEVLKLDHP--RVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDA 148
L ND V+ + P ++IDT +F ++ +R SL L LG +I+ + H+ ++DA
Sbjct: 1145 LKNDFRVINIYVPSEQIIDTVHLF-HMPHHRMVSLRFLAWHFLGTKIQSE--THDSIEDA 1201
Query: 149 SAAMKLVLAII----ERRVDNAVPLLQE 172
++L + E++ NA+ L E
Sbjct: 1202 RTTLQLYKHYLKLQEEKKFANALKNLYE 1229
>CGD|CAL0004517 [details] [associations]
symbol:orf19.4764 species:5476 "Candida albicans" [GO:0031251
"PAN complex" evidence=IEA] [GO:0031124 "mRNA 3'-end processing"
evidence=IEA] [GO:0006301 "postreplication repair" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001394 InterPro:IPR006055
InterPro:IPR012337 InterPro:IPR015943 PROSITE:PS50082
PROSITE:PS50235 PROSITE:PS50294 SMART:SM00479 CGD:CAL0004517
Pfam:PF00929 GO:GO:0005737 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 GO:GO:0006397 GO:GO:0003676 GO:GO:0090305
GO:GO:0006511 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
EMBL:AACQ01000001 EMBL:AACQ01000002 GO:GO:0004221 GO:GO:0004535
RefSeq:XP_723261.1 RefSeq:XP_723450.1 ProteinModelPortal:Q5APK0
STRING:Q5APK0 GeneID:3634773 GeneID:3635119 KEGG:cal:CaO19.12228
KEGG:cal:CaO19.4764 KO:K12571 Uniprot:Q5APK0
Length = 1190
Score = 126 (49.4 bits), Expect = 0.00019, P = 0.00019
Identities = 43/141 (30%), Positives = 72/141 (51%)
Query: 23 LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCS----LAEIQKRMKK 78
L R+ V+ N ID+ + + DY + +G+ +DL +T S L +Q +K
Sbjct: 1020 LARISVLRENGIPFIDDYIVHTSDIYDYLTNFSGIEPNDL-NLTLSNRENLVTLQTAYRK 1078
Query: 79 L---LSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLIFKYVDEYRRPSLYNLCKSVLGY 133
L L+ G I VGH L ND + L P ++ DT++I+ D R+ SL L +L
Sbjct: 1079 LWLLLNLGVIFVGHGLYNDFRTINLQVPERQIRDTAVIYYKSDFKRQLSLKFLAYVMLKE 1138
Query: 134 EIRKKGTPHNCLDDASAAMKL 154
+++ G H+ ++DA+ A+ L
Sbjct: 1139 KVQS-GN-HDSIEDANTALLL 1157
>UNIPROTKB|Q5F450 [details] [associations]
symbol:PAN2 "PAB-dependent poly(A)-specific ribonuclease
subunit 2" species:9031 "Gallus gallus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004221 "ubiquitin thiolesterase
activity" evidence=IEA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0000184 "nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001394
InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR015943
PROSITE:PS50235 SMART:SM00479 Pfam:PF00929 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 Gene3D:2.130.10.10 SUPFAM:SSF50978
GO:GO:0003676 GO:GO:0090305 GO:GO:0006511 eggNOG:COG0847
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0004221 GO:GO:0004535
KO:K12571 EMBL:AJ851450 IPI:IPI00579039 RefSeq:NP_001012972.1
UniGene:Gga.18769 ProteinModelPortal:Q5F450 STRING:Q5F450
GeneID:429172 KEGG:gga:429172 CTD:9924 HOGENOM:HOG000230585
HOVERGEN:HBG089847 InParanoid:Q5F450 OrthoDB:EOG4HQDHH
NextBio:20829982 Uniprot:Q5F450
Length = 1197
Score = 121 (47.7 bits), Expect = 0.00068, P = 0.00068
Identities = 46/174 (26%), Positives = 79/174 (45%)
Query: 37 IDELVKPEKAVADYRSEITGLTADDLVGVTCS--LAEIQK---RMKKLLSNGTILVGHSL 91
ID+ + ++ V DY ++ +G+ DL S L ++ +++ L+ G VGH L
Sbjct: 1020 IDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDVGVKFVGHGL 1079
Query: 92 NNDLEVLKLDHPR--VIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDAS 149
D V+ L P+ VIDT +F ++ R SL L L +I+ G H+ ++DA
Sbjct: 1080 QKDFRVINLMVPKDQVIDTVYLF-HIPRKRMISLRFLAWYFLDLKIQ--GETHDSIEDAR 1136
Query: 150 AAMKLVLAIIERRVDNAVPLLQEDVAET--ERARLFLHRIPTK-VPSEELHGVI 200
A++L +E + P V + E+ R ++P S HG +
Sbjct: 1137 TALQLYRKYLELSQGGSEPDDFRKVLKALYEKGRKLDWKVPEPDSQSSPKHGAV 1190
>RGD|1303301 [details] [associations]
symbol:Pan2 "PAN2 polyA specific ribonuclease subunit homolog
(S. cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001394
InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR015943
PROSITE:PS50235 SMART:SM00479 Pfam:PF00929 RGD:1303301
GO:GO:0005634 GO:GO:0005737 GO:GO:0000184 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0003676 GO:GO:0090305 GO:GO:0006511
eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0004221
GO:GO:0004535 KO:K12571 CTD:9924 HOGENOM:HOG000230585
HOVERGEN:HBG089847 GeneTree:ENSGT00390000013978 EMBL:AABR03055877
EMBL:BN000323 IPI:IPI00421767 RefSeq:NP_001008862.1 UniGene:Rn.9091
ProteinModelPortal:Q6IE70 STRING:Q6IE70 PhosphoSite:Q6IE70
PRIDE:Q6IE70 Ensembl:ENSRNOT00000050792 GeneID:408200
KEGG:rno:408200 UCSC:RGD:1303301 InParanoid:Q6IE70 NextBio:696390
ArrayExpress:Q6IE70 Genevestigator:Q6IE70 Uniprot:Q6IE70
Length = 1205
Score = 121 (47.7 bits), Expect = 0.00069, P = 0.00069
Identities = 39/139 (28%), Positives = 68/139 (48%)
Query: 37 IDELVKPEKAVADYRSEITGLTADDLVGVTCS--LAEIQK---RMKKLLSNGTILVGHSL 91
ID+ + ++ V DY ++ +G+ DL S L ++ +++ L+ G VGH L
Sbjct: 1025 IDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGL 1084
Query: 92 NNDLEVLKLDHPR--VIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDAS 149
D V+ L P+ V+DT +F ++ R SL L L +I+ G H+ ++DA
Sbjct: 1085 QKDFRVINLMVPKDQVLDTVYLF-HMPRKRMISLRFLAWYFLDLKIQ--GETHDSIEDAR 1141
Query: 150 AAMKLVLAIIERRVDNAVP 168
A++L +E + A P
Sbjct: 1142 TALQLYRKYLELSKNGAEP 1160
>UNIPROTKB|Q6IE70 [details] [associations]
symbol:Pan2 "PAB-dependent poly(A)-specific ribonuclease
subunit 2" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004221 "ubiquitin thiolesterase
activity" evidence=IEA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR017986
InterPro:IPR001394 InterPro:IPR006055 InterPro:IPR012337
InterPro:IPR015943 PROSITE:PS50235 SMART:SM00479 Pfam:PF00929
RGD:1303301 GO:GO:0005634 GO:GO:0005737 GO:GO:0000184
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003676 GO:GO:0090305
GO:GO:0006511 eggNOG:COG0847 InterPro:IPR013520 SUPFAM:SSF53098
GO:GO:0004221 GO:GO:0004535 KO:K12571 CTD:9924 HOGENOM:HOG000230585
HOVERGEN:HBG089847 GeneTree:ENSGT00390000013978 EMBL:AABR03055877
EMBL:BN000323 IPI:IPI00421767 RefSeq:NP_001008862.1 UniGene:Rn.9091
ProteinModelPortal:Q6IE70 STRING:Q6IE70 PhosphoSite:Q6IE70
PRIDE:Q6IE70 Ensembl:ENSRNOT00000050792 GeneID:408200
KEGG:rno:408200 UCSC:RGD:1303301 InParanoid:Q6IE70 NextBio:696390
ArrayExpress:Q6IE70 Genevestigator:Q6IE70 Uniprot:Q6IE70
Length = 1205
Score = 121 (47.7 bits), Expect = 0.00069, P = 0.00069
Identities = 39/139 (28%), Positives = 68/139 (48%)
Query: 37 IDELVKPEKAVADYRSEITGLTADDLVGVTCS--LAEIQK---RMKKLLSNGTILVGHSL 91
ID+ + ++ V DY ++ +G+ DL S L ++ +++ L+ G VGH L
Sbjct: 1025 IDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGL 1084
Query: 92 NNDLEVLKLDHPR--VIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDAS 149
D V+ L P+ V+DT +F ++ R SL L L +I+ G H+ ++DA
Sbjct: 1085 QKDFRVINLMVPKDQVLDTVYLF-HMPRKRMISLRFLAWYFLDLKIQ--GETHDSIEDAR 1141
Query: 150 AAMKLVLAIIERRVDNAVP 168
A++L +E + A P
Sbjct: 1142 TALQLYRKYLELSKNGAEP 1160
>ZFIN|ZDB-GENE-030131-3113 [details] [associations]
symbol:pan2 "PAN2 poly(A) specific ribonuclease
subunit homolog (S. cerevisiae)" species:7955 "Danio rerio"
[GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR017986 InterPro:IPR001394
InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR015943
PROSITE:PS50235 SMART:SM00479 Pfam:PF00929
ZFIN:ZDB-GENE-030131-3113 Gene3D:2.130.10.10 SUPFAM:SSF50978
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 GO:GO:0006511
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0004221 EMBL:BX927210
GeneTree:ENSGT00390000013978 IPI:IPI00899532
Ensembl:ENSDART00000111836 ArrayExpress:E7FG33 Bgee:E7FG33
Uniprot:E7FG33
Length = 1215
Score = 120 (47.3 bits), Expect = 0.00090, P = 0.00090
Identities = 38/131 (29%), Positives = 64/131 (48%)
Query: 37 IDELVKPEKAVADYRSEITGLTADDLVGVTCS--LAEIQK---RMKKLLSNGTILVGHSL 91
ID+ + ++ V DY ++ +G+ DL S L ++ +++ L+ G VGH L
Sbjct: 1036 IDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDTGVRFVGHGL 1095
Query: 92 NNDLEVLKLDHPR--VIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDAS 149
D V+ L P+ VIDT +F ++ R SL L L I+ G H+ ++DA
Sbjct: 1096 QKDFRVINLMVPKDQVIDTVYLF-HMPRKRMISLRFLAWYFLDLNIQ--GETHDSIEDAR 1152
Query: 150 AAMKLVLAIIE 160
A++L +E
Sbjct: 1153 TALQLYRKYLE 1163
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 364 364 0.00083 117 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 108
No. of states in DFA: 606 (64 KB)
Total size of DFA: 225 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 34.85u 0.12s 34.97t Elapsed: 00:00:01
Total cpu time: 34.87u 0.13s 35.00t Elapsed: 00:00:01
Start: Fri May 10 05:41:48 2013 End: Fri May 10 05:41:49 2013
WARNINGS ISSUED: 1