BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017922
(364 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A3KPE8|SDN1_ARATH Small RNA degrading nuclease 1 OS=Arabidopsis thaliana GN=SDN1 PE=2
SV=1
Length = 409
Score = 331 bits (848), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 162/277 (58%), Positives = 212/277 (76%), Gaps = 4/277 (1%)
Query: 1 MTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTAD 60
M S M AVDCEMVLCEDG+EGLVR+ VVDR+LKV +DE VKP K V DYR++ITG+TA+
Sbjct: 135 MESTNMVAVDCEMVLCEDGTEGLVRVGVVDRDLKVILDEFVKPNKPVVDYRTDITGITAE 194
Query: 61 DLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVD--EY 118
D+ + S+ +IQ+ ++ LS GTILVGHSLN DLEVLK+DHP+VIDT+L+FKY + +
Sbjct: 195 DIENASLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKIDHPKVIDTALVFKYPNTRKL 254
Query: 119 RRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETE 178
RRPSL NLCKS+LGYE+RK G PH+C+ DASAAMKL LA++E+RVD + +E + E E
Sbjct: 255 RRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKLALAVVEKRVDTTIKPSKE-MLEVE 313
Query: 179 RARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENV 238
+A+LFLH+IP VPSEEL V+ G FT++ K K +G Y AFA+F S ++A+QAFE++
Sbjct: 314 KAKLFLHKIPNNVPSEELEQVLSGKFTLDVKQAK-TQGRYYCAFALFHSSEDADQAFEHI 372
Query: 239 KGNQSKDSYGRPQKLVEFQSNAGIIASLYVRKMVCDE 275
G + DS G PQK+V + ++G AS+YVRKMV DE
Sbjct: 373 DGIEMTDSLGLPQKVVIIKLSSGSRASIYVRKMVQDE 409
>sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1
SV=1
Length = 782
Score = 303 bits (776), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/311 (51%), Positives = 215/311 (69%), Gaps = 15/311 (4%)
Query: 1 MTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTAD 60
+ S M ++DCEMV CEDGS+ LVR+ VDR+LKV +D+ VKP+K V DY+++ITG+TA+
Sbjct: 140 IKSTRMLSIDCEMVTCEDGSQALVRVGAVDRDLKVVLDKFVKPDKPVIDYKTDITGVTAE 199
Query: 61 DLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVD--EY 118
DL T S+A+IQK++++ LS GTILVGH L+NDL+VL++DH RVIDTS +F++VD +
Sbjct: 200 DLERATLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRIDHARVIDTSYVFEFVDAPKT 259
Query: 119 RRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAV-PLLQEDVAET 177
+RPSL NLCKSVLG E+R G HNC+ DA+AAMKLVLA +E+ + P + VAE
Sbjct: 260 QRPSLNNLCKSVLGQEVRMDGAAHNCVHDAAAAMKLVLAAVEKGAATLIQPTEEMMVAEK 319
Query: 178 ER---------ARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSP 228
R A+LFLH+IP VPSEELHGV+ G+FT+ K K G A FSSP
Sbjct: 320 RRQEARQEAGKAQLFLHKIPHDVPSEELHGVLSGNFTLVVKPPK--TGGYSTAVVDFSSP 377
Query: 229 QEANQAFENVKGNQSKDSYGRPQKLVEFQSNAGIIASLYVRKMVCDEPSNQIVVKKRTFE 288
+EAN+AFENV+G+ +KD G PQK + ++G+ SL+VRKMV D+ +I +R
Sbjct: 378 EEANEAFENVEGDVAKDKSGLPQKKAVLKLSSGLAVSLFVRKMVQDDSPCEISTSERA-R 436
Query: 289 GEENAGVSKKH 299
EEN SK+
Sbjct: 437 AEENNVSSKRQ 447
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 91/140 (65%), Gaps = 2/140 (1%)
Query: 176 ETERARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAF 235
E ++ +LFLH+IP VPS+ELHGV+ GDFT++ K KR +G Y A F+SP+EAN+AF
Sbjct: 465 EADKTKLFLHKIPHDVPSQELHGVLNGDFTLDVKPPKR-KGGYYNAVVDFNSPEEANEAF 523
Query: 236 ENVKGNQSKDSYGRPQKLVEFQSNAGIIASLYVRKMVCDEPSNQIVVKKRTFEGEENAGV 295
ENV+G+ KD G PQK+V F+ ++G SLYVRKMV D+ +I KR E N
Sbjct: 524 ENVEGDVVKDKTGLPQKMVVFKLSSGSGVSLYVRKMVHDDSPGEISTTKRARTEESNMS- 582
Query: 296 SKKHNIKWINEEEKIADTNQ 315
SK+ + +EE K A+ Q
Sbjct: 583 SKRQKTEDESEETKEANAKQ 602
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 110/189 (58%), Gaps = 13/189 (6%)
Query: 176 ETERARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAF 235
E ++ +L LH+IP VPS+EL VI G FT+E KR +G Y A F+SP+EAN+AF
Sbjct: 604 EADKTKLLLHKIPLNVPSQELKVVITGQFTLEVMPPKR-KGRYYNAVVTFNSPEEANKAF 662
Query: 236 ENVKGNQSKDSYGRPQKLVEFQSNAGIIASLYVRKMVCDEPSNQIVVKKRTFEGEENAGV 295
E VKG K+ G QK+V F+ ++G A LYVRKMV DE E NA
Sbjct: 663 EKVKGEAVKEKGGLAQKMVAFKLSSGSGACLYVRKMVQDESEET---------KEANANH 713
Query: 296 SKKHNIKWINE-EEKI-ADTNQCKCEDHLKVIERLKRELREKDFQISMQDKNISDLKKKV 353
+ ++K + E +EK+ A CE H K IE LK++L K+ QI QDK I++LK K+
Sbjct: 714 CEDDHLKEMEELKEKLKAMEFAISCEGHSKEIEELKQKLNAKEHQIQAQDKIIANLKMKL 773
Query: 354 AEMKDQKSR 362
E K KSR
Sbjct: 774 -EKKQSKSR 781
>sp|Q9FFG1|SDN2_ARATH Small RNA degrading nuclease 2 OS=Arabidopsis thaliana GN=SDN2 PE=2
SV=1
Length = 466
Score = 288 bits (738), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 162/321 (50%), Positives = 210/321 (65%), Gaps = 20/321 (6%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
M A+DCEMVLCEDGSE +VR+ VDR+LKV +DE VKP + V DYR+ ITGLTA DL
Sbjct: 142 MIAIDCEMVLCEDGSEAVVRVAAVDRDLKVILDEFVKPNQPVVDYRTFITGLTAQDLEKA 201
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKY-VDEYR----- 119
T S+ +IQ+++ +S TILVG SLN+DL+VLK+DH RVIDTSL+FKY D R
Sbjct: 202 TISVVDIQEKLLMFISEDTILVGQSLNHDLKVLKVDHARVIDTSLVFKYNYDGTRRPLRL 261
Query: 120 -RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETE 178
RPSL LCK +LGYE++K+G PHNC+ DA AAMKLVLAI++ + +VPL +E + E E
Sbjct: 262 KRPSLNYLCKCILGYEVQKEGVPHNCVHDAEAAMKLVLAILDNGAETSVPLSKE-MLEAE 320
Query: 179 RARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENV 238
+++L+LHRIP VP EEL+GV+ D E K K+ Y+A +F SP+EANQAFEN+
Sbjct: 321 KSKLYLHRIPCNVPYEELNGVVSRDIPHEVKPSKKQDRHYYSAIVVFKSPEEANQAFENI 380
Query: 239 KGNQSKDSYGRPQKLVEFQSNAGIIASLY--VRKMVCDEPSNQIVVKKRTFEGEENAGVS 296
G+ KDS G QK + F + LY VRKMV D+ +++ EEN S
Sbjct: 381 AGDFGKDSRGLSQKQI-FLEPSSSEPRLYVLVRKMVEDDLVGEVI-------AEENNASS 432
Query: 297 KKHNIKWINEEEKIADTNQCK 317
KK K N + D +CK
Sbjct: 433 KKR--KRENHSKGTRDRRRCK 451
>sp|Q9SN09|SDN4_ARATH Putative small RNA degrading nuclease 4 OS=Arabidopsis thaliana
GN=SDN4 PE=3 SV=1
Length = 322
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/276 (51%), Positives = 179/276 (64%), Gaps = 30/276 (10%)
Query: 1 MTSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTAD 60
M N M A+DCEMVLCEDG+EG+VR+ VDRNLKV +DE VKP K V DYR+ ITG+TA+
Sbjct: 70 MIPNQMLALDCEMVLCEDGTEGVVRVGAVDRNLKVILDEFVKPHKPVVDYRTAITGVTAE 129
Query: 61 DLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVD--EY 118
D+ T SL +IQ++++ LS G IL+ DHP VIDTSL+FKY + +
Sbjct: 130 DVQKATLSLVDIQEKLRPFLSAGAILI-------------DHPIVIDTSLVFKYPNSRKL 176
Query: 119 RRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQEDVAETE 178
RRPSL LC SVLGYE++K G H+C+ DA+AAMKL LA+I++RVD + L + E E
Sbjct: 177 RRPSLNTLCMSVLGYEVQKAGVSHHCVHDAAAAMKLALAVIKKRVDTTITLTK----EAE 232
Query: 179 RARLFLHRIPTKVPSEELH-----GVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQ 233
++RLFLHRIP + SEEL P +FTI+ K K +G Y A IF S EANQ
Sbjct: 233 KSRLFLHRIPHHLSSEELKKDLALKFFPKNFTIDVKPAK-TQGGYYCAVVIFGSSVEANQ 291
Query: 234 AFENVKGNQSKDSYGRPQKLVEFQSNAGIIASLYVR 269
AFENV G + DS G PQKL+ I++ YVR
Sbjct: 292 AFENVNGYKETDSSGLPQKLISCS-----ISTFYVR 322
>sp|O94443|YFE9_SCHPO Uncharacterized exonuclease C637.09 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC637.09 PE=3 SV=2
Length = 631
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 93/152 (61%), Gaps = 3/152 (1%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
+ A+DCEMV E+G E + R+ +VD +V DE VKPE V DY ++ +G+T + L V
Sbjct: 276 ILAIDCEMVRTENGLE-IARVTIVDMKSEVIYDEFVKPESPVTDYVTQYSGITEEKLRNV 334
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV-DEYRRPSLY 124
T L+++Q +KK + N T+L+GHSLN+DL LK HP +IDT+ I+ + +PSL
Sbjct: 335 TTVLSDVQSYLKKTVDNNTVLLGHSLNSDLNCLKFTHPHIIDTANIYNHTRGPPSKPSLK 394
Query: 125 NLCKSVLGYEIRKKGT-PHNCLDDASAAMKLV 155
L L EI+K G H+ +DA A + L+
Sbjct: 395 WLATKWLRREIQKAGALGHDSAEDALACVDLL 426
>sp|Q8L7M4|SDN5_ARATH Small RNA degrading nuclease 5 OS=Arabidopsis thaliana GN=SDN5 PE=2
SV=2
Length = 567
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
+ A+DCEM + ++G E L R+ +VD +V +D+LV P + DY + +G+TA + GV
Sbjct: 215 IVALDCEMCITKEGLE-LTRVTLVDIQGQVLLDKLVMPTNPITDYNTRYSGITAVMMEGV 273
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV-DEYRRPSLY 124
T +L +IQ+ KL+ TILVGHSL NDL LK+ H VIDT++++K+ + L
Sbjct: 274 TTTLKDIQEEFLKLVFKETILVGHSLENDLLSLKISHNLVIDTAVLYKHPHGRSYKTKLR 333
Query: 125 NLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVP 168
L K L EI++ + H+ +DA AAM L L I+ D P
Sbjct: 334 ILAKKFLAREIQESESGHDSAEDAKAAMDLALLKIKHGPDFGSP 377
>sp|Q8IX06|GOR_HUMAN Exonuclease GOR OS=Homo sapiens GN=REXO1L1 PE=2 SV=2
Length = 675
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 4/161 (2%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
+YA+DCEM G E L R+ VVD +++V D VKP+ + DY + +G+T D+
Sbjct: 501 IYALDCEMCYTTHGLE-LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 559
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV--DEYRRPSL 123
+ +L ++Q + S TIL+GHSL +DL LKL H V+DT+++F + Y+R SL
Sbjct: 560 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKR-SL 618
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVD 164
NL L I+ HN +DASA ++LV+ + +R
Sbjct: 619 RNLAADYLAQIIQDSQDGHNSSEDASACLQLVMWKVRQRAQ 659
>sp|P48778|GOR_PANTR Exonuclease GOR OS=Pan troglodytes GN=REXO1L1 PE=2 SV=3
Length = 690
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 4/160 (2%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
+YA+DCEM G E L R+ VVD +++V D VKP+ + DY + +G+T D+
Sbjct: 407 IYALDCEMCYTTHGLE-LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 465
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV--DEYRRPSL 123
+ +L ++Q + S TIL+GHSL +DL LKL H V+DT+++F + Y+R SL
Sbjct: 466 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVLDTAVLFPHYLGFPYKR-SL 524
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRV 163
NL LG I+ HN +DA+A ++LV+ + +R
Sbjct: 525 RNLAADYLGQIIQDSQDGHNSSEDANACLQLVMWKVRQRA 564
>sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P
PE=5 SV=2
Length = 583
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 92/160 (57%), Gaps = 4/160 (2%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
+YA+DCEM G E L R+ VVD +++V D VKP+ + DY + +G+T D+
Sbjct: 409 IYALDCEMCYTTHGLE-LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 467
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV--DEYRRPSL 123
+ +L ++Q + S TIL+GHSL +DL LKL H V+DT+++F + Y+R SL
Sbjct: 468 SITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKR-SL 526
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRV 163
NL L I+ HN +DA+A ++LV+ + +R
Sbjct: 527 RNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRA 566
>sp|P53331|REXO1_YEAST RNA exonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RNH70 PE=1 SV=1
Length = 553
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 97/152 (63%), Gaps = 5/152 (3%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL-VG 64
++A+DCEM L E G L R+ +V+ + +V +ELVKP+ + DY + +G+T + L VG
Sbjct: 225 IFALDCEMCLSEQGLV-LTRISLVNFDNEVIYEELVKPDVPIVDYLTRYSGITEEKLTVG 283
Query: 65 VTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKY-VDEYRRPSL 123
+L E+QK + K++S IL+GHSL NDL+V+KL HP V+DT++I+ + + +PSL
Sbjct: 284 AKKTLREVQKDLLKIISRSDILIGHSLQNDLKVMKLKHPLVVDTAIIYHHKAGDPFKPSL 343
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLV 155
L ++ L I+ H+ ++DA A ++L
Sbjct: 344 KYLSETFLNKSIQNG--EHDSVEDARACLELT 373
>sp|Q2T9U5|REXON_BOVIN Putative RNA exonuclease NEF-sp OS=Bos taurus PE=2 SV=1
Length = 783
Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 89/151 (58%), Gaps = 5/151 (3%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
++ +DCEM L G E L R+ +V +DELVKP+ + DY + +G+T L V
Sbjct: 230 LFGLDCEMCLTSKGRE-LTRISLVAEGGGCVMDELVKPDNKIVDYLTSFSGITKKILNPV 288
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEY-RRPSLY 124
T L ++Q+R+K LL +LVGHSL+ DL LK+ HP VIDTSL+ YV E RR L
Sbjct: 289 TTKLKDVQRRLKILLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLL--YVREQGRRFKLK 346
Query: 125 NLCKSVLGYEIR-KKGTPHNCLDDASAAMKL 154
L K++LG +I+ H+ +DA ++L
Sbjct: 347 FLAKAILGKDIQCPDRLGHDATEDARTTLEL 377
>sp|Q4R9F7|REXON_MACFA Putative RNA exonuclease NEF-sp OS=Macaca fascicularis
GN=QtsA-10054 PE=2 SV=1
Length = 772
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 91/156 (58%), Gaps = 7/156 (4%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
++ +DCEM L G E L R+ +V +DELVKPE + DY + +G+T L V
Sbjct: 228 LFGLDCEMCLTSKGRE-LTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPV 286
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEY-RRPSLY 124
T L ++Q+++K LL +LVGHSL+ DL LK+ HP VIDTSL+ YV E RR L
Sbjct: 287 TTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLL--YVREQGRRFKLK 344
Query: 125 NLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIE 160
L K++LG +I+ P DA+ +++L + +
Sbjct: 345 FLAKAILGKDIQ---CPDRLGHDATEDARIILELAQ 377
>sp|A1A5R7|REXON_RAT Putative RNA exonuclease NEF-sp OS=Rattus norvegicus PE=2 SV=1
Length = 754
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 95/156 (60%), Gaps = 7/156 (4%)
Query: 3 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL 62
S+ ++ +DCE+ L G E L R+ +V +DELVKP+ + DY + +G+T + L
Sbjct: 219 SSPLFGLDCEVCLTSMGKE-LTRISLVAEGGYCLMDELVKPDFKILDYLTSFSGITKEIL 277
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPS 122
VT L ++QK +++LL +LVGH L+ DL VLK+ HP VIDTSL++ + RR
Sbjct: 278 NPVTTKLKDVQKLLRELLPPDAVLVGHCLDLDLRVLKIIHPYVIDTSLLY-IGKQGRRFK 336
Query: 123 LYNLCKSVLGYEIR---KKGTPHNCLDDASAAMKLV 155
L L K +LG +I+ K G H+ ++DA A++LV
Sbjct: 337 LTFLAKVILGKDIQCPNKLG--HDGIEDARTALELV 370
>sp|Q96IC2|REXON_HUMAN Putative RNA exonuclease NEF-sp OS=Homo sapiens GN=44M2.3 PE=2 SV=1
Length = 774
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 88/152 (57%), Gaps = 5/152 (3%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
++ +DCEM L G E L R+ +V +DELVKPE + DY + +G+T L V
Sbjct: 228 LFGLDCEMCLTSKGRE-LTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPV 286
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEY-RRPSLY 124
T L ++Q+++K LL +LVGHSL+ DL LK+ HP VIDTSL+ YV E RR L
Sbjct: 287 TTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLL--YVREQGRRFKLK 344
Query: 125 NLCKSVLGYEIR-KKGTPHNCLDDASAAMKLV 155
L K +LG +I+ H+ +DA ++L
Sbjct: 345 FLAKVILGKDIQCPDRLGHDATEDARTILELA 376
>sp|Q7TT28|REXO1_MOUSE RNA exonuclease 1 homolog OS=Mus musculus GN=Rexo1 PE=1 SV=1
Length = 1213
Score = 99.0 bits (245), Expect = 4e-20, Method: Composition-based stats.
Identities = 61/153 (39%), Positives = 90/153 (58%), Gaps = 4/153 (2%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
++A+DCEM G E L R+ VVD +++V D VKP+ V DY + +G+T DLV
Sbjct: 1052 VFALDCEMSYTTYGLE-LTRVTVVDTDMQVVYDTFVKPDNEVVDYNTRFSGVTEADLVDT 1110
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV--DEYRRPSL 123
+ +L ++Q + + S TIL+GHSL +DL LK+ H V+DTS++F + Y+R SL
Sbjct: 1111 SITLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHGTVVDTSVLFPHRLGLPYKR-SL 1169
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 156
NL L I+ H+ +DASA M LV+
Sbjct: 1170 RNLMADYLRQIIQDNVDGHSSSEDASACMHLVI 1202
>sp|Q4PER6|REXO4_USTMA RNA exonuclease 4 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=REX4 PE=3 SV=1
Length = 375
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 8/151 (5%)
Query: 8 AVDCEMVLCED-GSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCEMV D GSE L R+ +V+ + D+ V+P++ V DYR+ ++G+ DL G
Sbjct: 137 AIDCEMVGVGDKGSESILARVSIVNFHGATIYDQFVRPQEKVTDYRTWVSGVRPKDLKGA 196
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLI--FKYVDEYRRP 121
S +++Q + L+ G +LVGH++ NDL+ L L HP+V+ DT+ + + + + P
Sbjct: 197 P-SFSQVQGEVANLI-KGKVLVGHAIQNDLKALLLSHPKVLIRDTATFQPLRDLAKTKYP 254
Query: 122 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAM 152
SL L K VLG +I+ +G H+ ++DA A M
Sbjct: 255 SLKKLAKLVLGIDIQLEGESHSSVEDARATM 285
>sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2
Length = 422
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 94/157 (59%), Gaps = 10/157 (6%)
Query: 8 AVDCEMV-LCEDGSEGLV-RLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCEMV + G E + R+ +V++ K D+ VKP + V DYR+ ++G+ ++L
Sbjct: 245 ALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQG 304
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLI--FKYVDEYRRP 121
L +QK + ++L G ILVGH+L+NDL+VL LDHP ++ DT FK + RP
Sbjct: 305 E-ELEVVQKEVAEML-KGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKSGRP 362
Query: 122 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAI 158
SL L + +LG ++++ H + DA AAM+L + +
Sbjct: 363 SLRLLSEKILGLQVQQ--AEHCSIQDAQAAMRLYVMV 397
>sp|Q6PAQ4|REXO4_MOUSE RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2
Length = 432
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 96/175 (54%), Gaps = 18/175 (10%)
Query: 8 AVDCEMV-LCEDGSEGLV-RLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCEMV + G E + R+ +V++ K D+ VKP + V DYR+ ++G+ ++L
Sbjct: 255 ALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQG 314
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLI--FKYVDEYRRP 121
++K + ++L G ILVGH+L+NDL+VL LDHP ++ DT F+ + RP
Sbjct: 315 E-EFEVVKKEVAEML-KGRILVGHALHNDLKVLFLDHPKKKIRDTQKFKPFRSRVKSGRP 372
Query: 122 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAI--------IERRVDNAVP 168
SL L + +LG IR + H + DA AAM+L + + RR A P
Sbjct: 373 SLKRLSEKILG--IRVQQAEHCSIQDAQAAMRLYVMVKREWESSTANRRAPAATP 425
>sp|Q757I9|REXO4_ASHGO RNA exonuclease 4 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=REX4 PE=3 SV=1
Length = 285
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 93/154 (60%), Gaps = 11/154 (7%)
Query: 8 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCE V + DG E L R+ VV+ + +D V+P++ V D+R+ ++G+T +
Sbjct: 115 AMDCEFVGVGPDGKESVLARVSVVNYYGQEVLDLYVRPKEKVTDWRTWVSGITPAHMK-Q 173
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDEY---RR 120
+L E Q+R+ +L N +L+GH L++DLE+L + HP+ + DTS+ + ++Y +
Sbjct: 174 AVTLEEAQRRVAAMLKN-RVLIGHGLHHDLEMLMVSHPKAQIRDTSMHGPFREKYGAGKT 232
Query: 121 PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
PSL L + VL +I +G H+ ++DA AA+ L
Sbjct: 233 PSLKKLAREVLNIDI--QGKEHSSVEDARAALLL 264
>sp|Q6FQA0|REXO4_CANGA RNA exonuclease 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX4 PE=3 SV=1
Length = 263
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 87/154 (56%), Gaps = 15/154 (9%)
Query: 8 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLV 63
A+DCE V G EG L R+ +V+ + V +D VKP + V D+R+ ++G+T D +
Sbjct: 97 AMDCEFVGV--GPEGKDSALARVSLVNFHGNVVLDIFVKPRETVTDWRTWVSGITPDHMK 154
Query: 64 GVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLIFKYVDEY--- 118
S + Q+++ +L + ILVGH++ +DLE L L HP +VIDT+ + +Y
Sbjct: 155 N-AVSFKQAQQQLSDILKD-KILVGHAVKHDLEALMLSHPKSKVIDTARHLPFRQKYAKG 212
Query: 119 RRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAM 152
+ PSL L K +L +I+ H+ ++DA A M
Sbjct: 213 KSPSLKKLAKEILNMDIQ--SGQHSSVEDARATM 244
>sp|Q4IEV5|REXO4_GIBZE RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1
Length = 319
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 83/153 (54%), Gaps = 10/153 (6%)
Query: 8 AVDCEMVLCEDGSE--GLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCEMV G L R+ +VD + D VKP++ V ++R+ ++G++ +
Sbjct: 135 AIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAVSGISQKSMR-F 193
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDEYRRP 121
E+Q + KLL G ILVGH L +DLE L L HP + DT+ FK R+P
Sbjct: 194 ARDFEEVQAEIDKLL-RGRILVGHDLKHDLEALILSHPGKDIRDTAKFSGFKKYANGRKP 252
Query: 122 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
SL L + +LG EI+ G H+ ++DA A M L
Sbjct: 253 SLRVLAQQLLGVEIQ--GGEHSSIEDARATMLL 283
>sp|Q6CE69|REXO4_YARLI RNA exonuclease 4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=REX4 PE=3 SV=1
Length = 291
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 91/153 (59%), Gaps = 10/153 (6%)
Query: 8 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCE V + +G+ L R+ +V+ V +DE VKP + V D+R+ ++G+T +V
Sbjct: 135 ALDCEFVGVGPNGARSILARVSIVNYYGHVLMDEYVKPIERVTDWRTWVSGVTPA-MVAN 193
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDT--SLIFKYVDEYRRP 121
S +E Q+R+K+LL NG L+GH+L NDL VL LDHPR + DT FK V + P
Sbjct: 194 GISFSEAQERVKRLL-NGRTLIGHALINDLAVLGLDHPRADIRDTQKPQYFKTVCGCKTP 252
Query: 122 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
SL ++ K + I++ H+ + DA AAM L
Sbjct: 253 SLKHVMKECVDLNIQQ--GEHSSVIDAQAAMLL 283
>sp|O94375|REXO4_SCHPO RNA exonuclease 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rex4 PE=3 SV=1
Length = 260
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 8/151 (5%)
Query: 8 AVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTC 67
A+DCEMV D L R+ +V+ + V D V+P++ V D+R+ ++G+ + +
Sbjct: 95 AMDCEMVGVADDMSVLARVSIVNYHGHVVYDTYVRPKEKVTDWRTWVSGVKSFHMRDAP- 153
Query: 68 SLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKY--VDEYRRPSL 123
S ++Q + K+L N +LVGH+++NDL+VL L HPR + DTS Y + + R P L
Sbjct: 154 SFEKVQAEVAKILDN-RVLVGHAVHNDLKVLLLSHPRRMIRDTSRFSGYRKLAKGRTPGL 212
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
L + +LG +I+ H+ + DA A M+L
Sbjct: 213 KKLAEVILGRDIQ--SGQHSSVQDAQATMEL 241
>sp|P0CQ44|REXO4_CRYNJ RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=REX4 PE=3
SV=1
Length = 408
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 89/153 (58%), Gaps = 10/153 (6%)
Query: 8 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCEMV + +G E L R+ +V+ + V +D V+P + V DYR+ I+G+ DL+G
Sbjct: 134 AIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLGA 193
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLI--FKYVDEYRRP 121
E+ K++ LL + IL+GH+++NDL+VL L HP + DT + + + +RP
Sbjct: 194 P-QFDEVNKQVANLLHD-KILIGHAIDNDLKVLMLTHPGPLTRDTQKYKPLQEIAKNKRP 251
Query: 122 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
L L + +LG +I+ H+ + DA AM L
Sbjct: 252 GLKKLSELLLGVQIQT--GAHSSVVDARVAMAL 282
>sp|P0CQ45|REXO4_CRYNB RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=REX4 PE=3 SV=1
Length = 408
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 89/153 (58%), Gaps = 10/153 (6%)
Query: 8 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCEMV + +G E L R+ +V+ + V +D V+P + V DYR+ I+G+ DL+G
Sbjct: 134 AIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLGA 193
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLI--FKYVDEYRRP 121
E+ K++ LL + IL+GH+++NDL+VL L HP + DT + + + +RP
Sbjct: 194 P-QFDEVNKQVANLLHD-KILIGHAIDNDLKVLMLTHPGPLTRDTQKYKPLQEIAKNKRP 251
Query: 122 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
L L + +LG +I+ H+ + DA AM L
Sbjct: 252 GLKKLSELLLGVQIQT--GAHSSVVDARVAMAL 282
>sp|Q6BIK6|REXO4_DEBHA RNA exonuclease 4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=REX4 PE=3 SV=2
Length = 272
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 10/153 (6%)
Query: 8 AVDCEMV-LCEDGSE-GLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCE V + +G+E L R+ +V+ D+ VKP + V D+R+ ++G+T +
Sbjct: 101 AMDCEFVGVGPEGTESALARVSIVNFYGHTVFDKFVKPRERVTDWRTWVSGVTPKHM-NE 159
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLI--FKYVDEYRRP 121
S E Q KLL G ILVGH++++DL+ L L HP R+ DTS F+ + + P
Sbjct: 160 AISFQEAQNETSKLL-EGRILVGHAIHHDLDALFLSHPKSRIRDTSQYKPFRSISMGKTP 218
Query: 122 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
SL L L +I+ G+ H+ ++DA A M L
Sbjct: 219 SLKKLSSHFLKIDIQ--GSAHSSVEDARATMLL 249
>sp|Q8N1G1|REXO1_HUMAN RNA exonuclease 1 homolog OS=Homo sapiens GN=REXO1 PE=1 SV=3
Length = 1221
Score = 84.3 bits (207), Expect = 1e-15, Method: Composition-based stats.
Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
+YA+DCEM G E L R+ VVD ++ V D VKP+ + DY + +G+T DL
Sbjct: 1060 IYALDCEMSYTTYGLE-LTRVTVVDTDVHVVYDTFVKPDNEIVDYNTRFSGVTEADLADT 1118
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV--DEYRRPSL 123
+ +L ++Q + + S TIL+GHSL +DL LK+ H V+DTS++F + Y+R SL
Sbjct: 1119 SVTLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHSTVVDTSVLFPHRLGLPYKR-SL 1177
Query: 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 156
NL L I+ H+ +DA A M LV+
Sbjct: 1178 RNLMADYLRQIIQDNVDGHSSSEDAGACMHLVI 1210
>sp|Q91560|REXO4_XENLA RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2
Length = 421
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 91/154 (59%), Gaps = 12/154 (7%)
Query: 8 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCEMV + DG E L R+ +V+ K D+ VKP + V DYR+ ++G+ +D V
Sbjct: 236 AMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPED-VKK 294
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDEYRRP 121
+QK + ++L G LVGH+++NDL++L LDHP+ + DT FK + RP
Sbjct: 295 GEPFKVVQKEVSEIL-RGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKQKVKSGRP 353
Query: 122 SLYNLCKSVLGYEIRKKGTPHNC-LDDASAAMKL 154
SL LC+ +L +++ T +C + DA AAM+L
Sbjct: 354 SLKLLCEKILNVKVQ---TGEHCSVQDAQAAMRL 384
>sp|Q6DEW6|REXO4_XENTR RNA exonuclease 4 OS=Xenopus tropicalis GN=rexo4 PE=2 SV=1
Length = 414
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 90/153 (58%), Gaps = 10/153 (6%)
Query: 8 AVDCEMV-LCEDGSEG-LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCEMV + DG E L R+ +V+ K D+ V+P + V DYR+ ++G+ DD+
Sbjct: 230 AMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYVRPTERVTDYRTAVSGIRPDDIKNG 289
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDEYRRP 121
+ ++Q + ++L G LVGH+++NDL++L LDHP+ + DT FK + RP
Sbjct: 290 E-AFKDVQAEVAEIL-RGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKEKVKSGRP 347
Query: 122 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
SL LC+ +L +++ H + DA AAM+L
Sbjct: 348 SLKLLCEKILNVKVQTGE--HCSVQDAQAAMRL 378
>sp|Q08237|REXO4_YEAST RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=REX4 PE=1 SV=1
Length = 289
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 11/154 (7%)
Query: 8 AVDCEMV-LCEDGSE-GLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
A+DCE V + +G E L R+ +V+ V +DE VKP + V ++R+ ++G+ + +
Sbjct: 123 AMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHMKNA 182
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLIFKYVDEY---RR 120
+ E QK+ +L G ILVGH+L +DLE L L HP+ + DTS + Y +
Sbjct: 183 -ITFKEAQKKTADILE-GRILVGHALKHDLEALMLSHPKSLLRDTSRHLPFRKLYAKGKT 240
Query: 121 PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
PSL L + VL I++ H+ ++DA A M L
Sbjct: 241 PSLKKLTREVLKISIQE--GEHSSVEDARATMLL 272
>sp|Q6CFE7|REXO3_YARLI RNA exonuclease 3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=REX3 PE=3 SV=1
Length = 757
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 11/156 (7%)
Query: 8 AVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGL--------TA 59
AVDCEM+ G E L R+ +D + K T+D +V+P + DY + +G+ T
Sbjct: 599 AVDCEMLYTSLGME-LCRVTCIDYHGKKTLDRVVRPTGRILDYNTRFSGISDINEPIITE 657
Query: 60 DDLVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYR 119
G + S E + + KL++ TILVGH L NDL ++L H R+IDTS+++ +
Sbjct: 658 SGEKGDSISFEEAHRLILKLINKQTILVGHGLENDLIAMRLIHDRIIDTSILYPDFNPRY 717
Query: 120 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLV 155
+ +L L L I+ H+ ++DA AA+ +V
Sbjct: 718 KTALKTLALKYLKRTIQTG--EHDSMEDALAALDVV 751
>sp|Q10124|PQE1_CAEEL Putative RNA exonuclease pqe-1 OS=Caenorhabditis elegans GN=pqe-1
PE=2 SV=2
Length = 1647
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 3 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL 62
S +YA+DCEMV G L RL +VD +D VKP V D +E +GLT + +
Sbjct: 1475 STRVYALDCEMVYTIAGP-ALARLTMVDMQRNRVLDVFVKPPTDVLDPNTEFSGLTMEQI 1533
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFK 113
+L +++ K ++ TIL+GHSL +DL+ +++ H VIDT+++F+
Sbjct: 1534 NSAPDTLKTCHQKLFKYVNADTILIGHSLESDLKAMRVVHKNVIDTAILFR 1584
>sp|Q4WHF8|REXO4_ASPFU RNA exonuclease 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rex4 PE=3 SV=1
Length = 310
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 85/154 (55%), Gaps = 11/154 (7%)
Query: 8 AVDCEMVLC---EDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVG 64
A+DCEMV D L R+ +V+ N + D V+P++ + D+R+ ++G++ +
Sbjct: 118 AMDCEMVGVGPNPDNDSALARVSIVNFNGEQVYDSYVRPKEMITDWRTHVSGISPKHMAE 177
Query: 65 VTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTS--LIFKYVDEYRR 120
SL ++QK + ++L +G ILVGH+++NDL+ L L HP+ + DTS ++ +
Sbjct: 178 AR-SLEQVQKDVAEIL-DGRILVGHAVSNDLDALLLGHPKRDIRDTSKHPPYRKIAGGGS 235
Query: 121 PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
P L L LG I+ H+ ++DA A M L
Sbjct: 236 PRLKILASEFLGLNIQDGA--HSSVEDAKATMLL 267
>sp|Q66UW5|ISG20_PIG Interferon-stimulated gene 20 kDa protein OS=Sus scrofa GN=Isg20
PE=1 SV=2
Length = 181
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 87/155 (56%), Gaps = 10/155 (6%)
Query: 8 AVDCEMV-LCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 66
A+DCEMV + GL R +V+ + V D+ ++PE + DYR+ ++G+T +VG T
Sbjct: 9 AMDCEMVGMGPRRESGLARCSLVNVHGAVLYDKFIQPEGEITDYRTRVSGVTPQHMVGAT 68
Query: 67 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTS---LIFK--YVDEYR 119
A + + +LL G ++VGH L +D + LK D R + DTS L+++ +D R
Sbjct: 69 -PFAVARLEILQLL-KGKLVVGHDLKHDFQALKEDMNRYTIYDTSTDMLLWREAKLDHCR 126
Query: 120 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
R SL LC+ +L I+ H+ ++DA A M+L
Sbjct: 127 RVSLRVLCERLLHKSIQNSLLGHSSVEDAKATMEL 161
>sp|Q7S9B7|REXO4_NEUCR RNA exonuclease 4 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rex-4
PE=3 SV=1
Length = 406
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 79/155 (50%), Gaps = 14/155 (9%)
Query: 8 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLV 63
++DCEMV G G L R +VD + D V+P V D+R+ ++G++ +
Sbjct: 218 SIDCEMV--GTGPSGATSVLARCSIVDFHGHQIYDSYVRPTAFVTDWRTHVSGISKRHMA 275
Query: 64 GVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLI--FKYVDEYR 119
S +Q + LL G ILVGH + +DLEVL +HP + DT+ F+
Sbjct: 276 SAR-SFESVQATVAALL-KGRILVGHDVKHDLEVLGFEHPHRDIRDTAKYSGFRKYGHGP 333
Query: 120 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
+PSL L K VLG EI + H+ ++DA AM L
Sbjct: 334 KPSLRVLAKEVLGIEIHQGQ--HSSVEDARVAMLL 366
>sp|Q6CJB5|REXO3_KLULA RNA exonuclease 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REX3 PE=3 SV=1
Length = 478
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 85/149 (57%), Gaps = 6/149 (4%)
Query: 8 AVDCEMVLCEDGSEGLVRLCVVD-RNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 66
A+DCEM G E ++R+ +VD + +V D+++KP + D S+ +G+ D T
Sbjct: 322 ALDCEMAFTSKGYE-MIRITIVDFWSSEVVYDKVIKPLGEIIDLNSKFSGIHHIDDTAPT 380
Query: 67 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYNL 126
AE +++ +IL+GH L+NDL V+++ H +VIDT++++ +Y+ SL NL
Sbjct: 381 IHEAEKCYICPSMINQNSILIGHGLDNDLRVMRIVHDKVIDTAVLYP-AGKYKS-SLKNL 438
Query: 127 CKSVLGYEIRKKGTPHNCLDDASAAMKLV 155
+L I +G H+ +DA AAM ++
Sbjct: 439 SFEILSRRI--QGGEHDSSEDAIAAMDVI 465
>sp|Q6CMT3|REXO4_KLULA RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REX4 PE=3 SV=1
Length = 294
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 85/154 (55%), Gaps = 11/154 (7%)
Query: 8 AVDCEMV-LCEDGSE-GLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGV 65
++DCE V + DG + L R+ +V+ V +D V+P++ V D+R+ ++G+ +
Sbjct: 121 SMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHMANA 180
Query: 66 TCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDEY---RR 120
+ QK++ +L G ILVGHS+++DL L L HPR + DTS + +Y +
Sbjct: 181 VTQ-EDCQKQVSNVL-KGRILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQKYSEGKT 238
Query: 121 PSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
PSL L K +L +I+ H+ ++DA A M L
Sbjct: 239 PSLKKLTKEILQLDIQ--DGEHSSIEDARATMLL 270
>sp|Q8WTP8|AEN_HUMAN Apoptosis-enhancing nuclease OS=Homo sapiens GN=AEN PE=1 SV=2
Length = 325
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 15/158 (9%)
Query: 8 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLV 63
A+DCEMV G G L R +V + V D+ ++PE +ADYR+ +G+T +
Sbjct: 112 AIDCEMV--GTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHMR 169
Query: 64 GVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDE---- 117
QK + KLL G ++VGH+L+ND + LK HPR DT+ + ++ E
Sbjct: 170 KAV-PFQVAQKEILKLL-KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSEPGLH 227
Query: 118 -YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
R SL +L +L +I+ H+ ++DA+ AM+L
Sbjct: 228 TRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMEL 265
>sp|Q5A3Q0|REXO4_CANAL RNA exonuclease 4 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=REX4 PE=3 SV=1
Length = 285
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 94/170 (55%), Gaps = 19/170 (11%)
Query: 8 AVDCEMV-LCEDGSE-GLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTA----DD 61
A+DCE V + +DG E L R+ +++ V +D V+P++ V D+R+ ++G+ + D
Sbjct: 118 AIDCEFVGIGKDGEESALARISIINYYGVVLLDTYVRPQERVTDWRTWVSGIQSYHMQDA 177
Query: 62 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLI--FKYVDE 117
+ T L ++ L N ILVGH++NNDL++L L HP+ + DT F+ +
Sbjct: 178 IDFKTAQLKTME------LINNKILVGHAVNNDLDILFLSHPKSMIRDTCKFPKFREIAG 231
Query: 118 YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAV 167
+ PSL L K + +I+ H+ ++DA A M L+ + +R ++ ++
Sbjct: 232 GKSPSLKKLIKHFIQVDIQIGQ--HSSVEDARATM-LLFRLFKREIEQSM 278
>sp|Q5REE2|AEN_PONAB Apoptosis-enhancing nuclease OS=Pongo abelii GN=AEN PE=2 SV=1
Length = 325
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 15/158 (9%)
Query: 8 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLV 63
A+DCEMV G G L R +V + V D+ ++PE + DYR+ +G+T +
Sbjct: 112 AIDCEMV--GTGPRGRVSELARCSIVSYHGDVLYDKYIRPEMPIVDYRTRWSGITRQHMC 169
Query: 64 GVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDEYR-- 119
QK + KLL G ++VGH+L+ND + LK HPR DT+ + ++ E
Sbjct: 170 KAI-PFQVAQKEILKLL-KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSEPSLH 227
Query: 120 ---RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
R SL +L +L +I+ H+ ++DA+ AM+L
Sbjct: 228 IRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMEL 265
>sp|Q9P7H2|REXO3_SCHPO RNA exonuclease 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rex3 PE=3 SV=1
Length = 540
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 84/151 (55%), Gaps = 6/151 (3%)
Query: 8 AVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTC 67
A+DCE+ +G E L RL VV + + +D +KP+ + + +G+ +
Sbjct: 384 ALDCELCYTTNGME-LARLTVVAKE-SIIMDVFIKPKGKILSLNTRFSGIHDAKELESGI 441
Query: 68 SLAEIQKRMKKL-LSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYV-DEYRRPSLYN 125
++ ++ ++K+L ++ TIL+GH L NDL ++L H RVIDT+L+F + R SL
Sbjct: 442 TMDQMYIKIKELGMNKNTILIGHGLENDLNAMRLIHKRVIDTALLFTHARGPPFRYSLKY 501
Query: 126 LCKSVLGYEIRKKGTPHNCLDDASAAMKLVL 156
L K LG I+ + H+ +DA +A++LV
Sbjct: 502 LTKKYLGTTIQT--STHDSEEDAVSALQLVF 530
>sp|Q96AZ6|ISG20_HUMAN Interferon-stimulated gene 20 kDa protein OS=Homo sapiens GN=ISG20
PE=1 SV=2
Length = 181
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 10/155 (6%)
Query: 8 AVDCEMV-LCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVT 66
A+DCEMV L GL R +V+ + V D+ ++PE + DYR+ ++G+T +VG T
Sbjct: 9 AMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGAT 68
Query: 67 CSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTS---LIFK--YVDEYR 119
A + + +LL G ++VGH L +D + LK D + DTS L+++ +D R
Sbjct: 69 -PFAVARLEILQLL-KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCR 126
Query: 120 RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
R SL L + +L I+ H+ ++DA A M+L
Sbjct: 127 RVSLRVLSERLLHKSIQNSLLGHSSVEDARATMEL 161
>sp|Q6AXU3|I20L2_RAT Interferon-stimulated 20 kDa exonuclease-like 2 OS=Rattus
norvegicus GN=Isg20l2 PE=2 SV=1
Length = 369
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 88/160 (55%), Gaps = 15/160 (9%)
Query: 6 MYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 61
M A+DCEMV G +G L R +V+ N V DE ++P + DYR+ +G+
Sbjct: 195 MVAIDCEMV--GTGPKGRVSSLARCSIVNYNGDVLYDEYIRPPCYIVDYRTRWSGIRKCH 252
Query: 62 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTS---LIFKYVD 116
+V T + ++ K+LS G ++VGH+++ND + L+ HP+ + DTS L+ + D
Sbjct: 253 MVNAT-PFKTARSQILKILS-GKVVVGHAIHNDYKALQYFHPKSLTRDTSQIPLLNRKAD 310
Query: 117 --EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
E SL +L K +L +I+ + H+ ++DA A ++L
Sbjct: 311 CPENVTLSLKHLTKKLLSRDIQTGLSGHSSVEDAQATLEL 350
>sp|Q9H9L3|I20L2_HUMAN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Homo sapiens
GN=ISG20L2 PE=1 SV=1
Length = 353
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 15/160 (9%)
Query: 6 MYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 61
M A+DCEMV G +G L R +V+ N V DE + P + DYR+ +G+
Sbjct: 179 MVAIDCEMV--GTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQH 236
Query: 62 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTSLIFKYVDEYR 119
+V T + ++ K+L+ G I+VGH+++ND + L+ HP+ + DTS I +
Sbjct: 237 MVNAT-PFKIARGQILKILT-GKIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKAD 294
Query: 120 RP-----SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
P SL +L K +L +I+ + H+ ++DA A M+L
Sbjct: 295 CPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMEL 334
>sp|Q9CZI9|AEN_MOUSE Apoptosis-enhancing nuclease OS=Mus musculus GN=Aen PE=2 SV=1
Length = 336
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 17/159 (10%)
Query: 8 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL- 62
A+DCEMV G +G L R VV + V D+ ++PE + DYR+ +G+T +
Sbjct: 111 AIDCEMV--GTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMH 168
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFKYVDEYR- 119
+ +A QK + KLL G ++VGH+L+ND + LK HPR DT+ + + +
Sbjct: 169 KAIPFQVA--QKEILKLL-KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNLLSQPSS 225
Query: 120 ----RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
R SL +L ++L +I+ H+ ++DA AM+L
Sbjct: 226 LIRTRVSLKDLALNLLHKKIQVGHQGHSSVEDAMTAMEL 264
>sp|Q3U1G5|I20L2_MOUSE Interferon-stimulated 20 kDa exonuclease-like 2 OS=Mus musculus
GN=Isg20l2 PE=2 SV=2
Length = 368
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 15/160 (9%)
Query: 6 MYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 61
M A+DCEMV G +G L R +V+ N V DE V P + +YR+ +G+
Sbjct: 194 MVAIDCEMV--GTGPKGRVSSLARCSIVNYNGDVLYDEYVLPPCYIVNYRTRWSGIRKCH 251
Query: 62 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTS---LIFKYVD 116
+V T + ++ K+LS G +++GH+++ND + L+ HP+ + DTS L+ + D
Sbjct: 252 MVNAT-PFKTARSQILKILS-GKVVIGHAIHNDYKALQYFHPKSLTRDTSRIPLLNRKAD 309
Query: 117 --EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
E SL +L K +L +I+ T H+ ++DA A M+L
Sbjct: 310 CPENVTLSLKHLTKKLLSRDIQVGNTGHSSVEDAQATMEL 349
>sp|B2GUW6|AEN_RAT Apoptosis-enhancing nuclease OS=Rattus norvegicus GN=Aen PE=2 SV=1
Length = 332
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 17/159 (10%)
Query: 8 AVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDL- 62
A+DCEMV G +G L R VV + V D+ ++PE + DYR+ +G+T +
Sbjct: 107 AIDCEMVGT--GPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQHMH 164
Query: 63 VGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHP--RVIDTSLIFKYVDEYR- 119
+ +A QK + KLL G ++VGH+L+ND + LK HP ++ DT+ + + +
Sbjct: 165 KAIPFQVA--QKEILKLL-KGKVVVGHALHNDFQALKYVHPGSQIRDTTYVPNLLSQPSS 221
Query: 120 ----RPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
R SL +L ++L +I+ H+ ++DA AM+L
Sbjct: 222 LTRARVSLKDLALNLLHKKIQVGHHGHSSVEDAMTAMEL 260
>sp|Q2YDK1|I20L2_BOVIN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Bos taurus
GN=ISG20L2 PE=2 SV=1
Length = 349
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 15/160 (9%)
Query: 6 MYAVDCEMVLCEDGSEG----LVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADD 61
M A+DCEMV G +G L R +V+ + V DE + P + DYR+ +G+
Sbjct: 175 MVAIDCEMV--GTGPKGHVSSLARCSIVNYDGDVLYDEYILPPCHIVDYRTRWSGIRKQH 232
Query: 62 LVGVTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVI--DTS---LIFKYVD 116
+V T + ++ K+L+ G I+VGH+++ND + L+ HP+ + DTS L+ + D
Sbjct: 233 MVNAT-PFKIARNQILKILA-GKIVVGHAIHNDFKALQYIHPKSLTRDTSHIPLLNRKAD 290
Query: 117 --EYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154
E SL +L K +L +I+ + H+ ++DA A M+L
Sbjct: 291 CPENATMSLKSLTKKLLNRDIQAGKSGHSSVEDAQATMEL 330
>sp|Q5AL29|REXO3_CANAL RNA exonuclease 3 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=REX3 PE=3 SV=1
Length = 404
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 86/162 (53%), Gaps = 13/162 (8%)
Query: 8 AVDCEMVLCEDGSEGLVRLCVVDR-NLKVTIDELVKPEKAVADYRSEITGL--TADDLVG 64
+DCEM G E L+R+ +D K +D +KP + D+ + +G+ DD +
Sbjct: 243 GIDCEMGFTTKGFE-LMRITAIDYFTSKTVLDIFIKPIGEIVDFNTRYSGIHELTDDFL- 300
Query: 65 VTCSLAEIQKRMKKLLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIF--KY-VDEYRRP 121
S + +++ +++ + TIL+GH L ND+ ++L H +IDTS++F K+ RR
Sbjct: 301 ---SWEQSMEKLGEIMDSETILIGHGLENDMNAMRLIHENIIDTSILFPNKWKTGPTRRW 357
Query: 122 SLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRV 163
SL +L L I+ H+ +D+ AA+ +V +++++
Sbjct: 358 SLKDLAFEFLSRRIQTGE--HDSCEDSIAAIDIVKYFVKKQL 397
>sp|Q6FIU7|REXO3_CANGA RNA exonuclease 3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX3 PE=3 SV=1
Length = 398
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 13/168 (7%)
Query: 8 AVDCEMVLCEDGSEGLVRLCVVDRNLKVTI-DELVKPEKAVADYRSEITGLTADDLVGVT 66
A+DCEM G E +VRL +VD T+ DE+++P V D ++ +G+ +D++
Sbjct: 241 ALDCEMGFTTMGYE-MVRLTIVDFFTSKTLYDEIIRPIGEVIDLNTQFSGVREEDILYAK 299
Query: 67 CSLAEIQKRMKK-LLSNGTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYN 125
++ ++ +++ +IL+GH L NDL V++L H R++DT++++ V ++ SL N
Sbjct: 300 DYEDVMEDVLRADMINRNSILIGHGLENDLNVMRLFHTRILDTAIMYS-VGRFKN-SLKN 357
Query: 126 LCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVPLLQED 173
L +L +I+ H+ DA AAM ++ + N + + Q D
Sbjct: 358 LSFEILSRKIQLG--EHDSSQDAIAAMDII------KAKNGISITQTD 397
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,241,070
Number of Sequences: 539616
Number of extensions: 5500582
Number of successful extensions: 18760
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 18531
Number of HSP's gapped (non-prelim): 263
length of query: 364
length of database: 191,569,459
effective HSP length: 119
effective length of query: 245
effective length of database: 127,355,155
effective search space: 31202012975
effective search space used: 31202012975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)