Query 017922
Match_columns 364
No_of_seqs 261 out of 1359
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 07:04:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wlj_A Interferon stimulated g 100.0 1.8E-33 6.3E-38 253.8 15.7 157 3-161 4-168 (189)
2 2p1j_A POLIII, DNA polymerase 100.0 2.4E-31 8.3E-36 239.1 15.9 155 3-163 11-177 (186)
3 2gui_A DNA polymerase III epsi 100.0 1.2E-30 4E-35 235.1 16.4 155 3-161 8-184 (194)
4 1w0h_A 3'-5' exonuclease ERI1; 100.0 1.1E-29 3.7E-34 229.9 12.6 161 3-167 9-200 (204)
5 3mxm_B Three prime repair exon 100.0 1.5E-29 5E-34 237.5 9.2 152 4-160 12-213 (242)
6 1y97_A Three prime repair exon 100.0 3.3E-28 1.1E-32 225.6 13.1 153 4-161 10-209 (238)
7 3u3y_B Three prime repair exon 99.9 2.5E-28 8.6E-33 237.8 10.0 153 4-161 12-214 (314)
8 2f96_A Ribonuclease T; RNAse, 99.9 1.7E-27 6E-32 219.6 14.5 154 3-161 28-212 (224)
9 1zbh_A 3'-5' exonuclease ERI1; 99.9 2.3E-27 7.8E-32 228.9 15.1 159 4-166 78-267 (299)
10 2xri_A ERI1 exoribonuclease 3; 99.9 1.5E-27 5.1E-32 220.7 12.4 158 4-168 31-220 (224)
11 2igi_A Oligoribonuclease; RNAs 99.9 4.4E-27 1.5E-31 209.3 12.6 146 3-162 4-177 (180)
12 3v9w_A Ribonuclease T; DEDD nu 99.9 1.3E-26 4.4E-31 215.0 13.6 156 3-163 36-222 (235)
13 3cg7_A CRN-4, cell death-relat 99.9 3.9E-27 1.3E-31 228.6 10.5 159 4-167 19-214 (308)
14 2gbz_A Oligoribonuclease; ORN, 99.9 1.3E-26 4.6E-31 209.8 11.8 144 2-162 7-181 (194)
15 1zbu_A ERI-1 homolog, 3'-5' ex 99.9 1.1E-26 3.9E-31 229.2 11.7 159 4-166 128-317 (349)
16 3tr8_A Oligoribonuclease; tran 99.9 4.6E-26 1.6E-30 206.7 11.4 148 2-163 7-182 (186)
17 2qxf_A Exodeoxyribonuclease I; 99.9 2.6E-25 8.8E-30 227.8 12.5 156 2-161 7-200 (482)
18 2kfn_A Klenow fragment of DNA 99.1 8E-10 2.7E-14 115.9 16.1 142 4-162 26-193 (605)
19 4hec_A Putative uncharacterize 99.0 2.6E-09 8.8E-14 97.1 12.7 145 6-159 24-179 (190)
20 1x9m_A DNA polymerase; DNA plo 99.0 5.1E-10 1.7E-14 119.2 7.1 137 6-167 1-188 (698)
21 4dfk_A DNA polymerase I, therm 98.4 3.3E-07 1.1E-11 95.1 7.8 120 3-162 9-128 (540)
22 4gmj_B CCR4-NOT transcription 98.3 5.9E-06 2E-10 79.3 12.9 160 4-167 34-250 (285)
23 3saf_A Exosome component 10; e 98.2 8.6E-06 2.9E-10 82.2 11.1 132 3-162 128-277 (428)
24 1qht_A Protein (DNA polymerase 98.1 5.5E-06 1.9E-10 89.2 9.6 141 3-159 134-327 (775)
25 3d45_A Poly(A)-specific ribonu 98.0 1.6E-05 5.4E-10 81.8 10.0 153 81-239 274-494 (507)
26 2d5r_A CCR4-NOT transcription 97.9 0.00013 4.5E-09 68.8 14.0 160 4-167 24-240 (252)
27 1noy_A Protein (DNA polymerase 97.9 0.00014 4.8E-09 72.0 14.4 151 3-158 105-335 (388)
28 2e6m_A Werner syndrome ATP-dep 97.8 0.00018 6.1E-09 64.6 12.3 89 74-162 86-195 (208)
29 1yt3_A Ribonuclease D, RNAse D 97.7 0.00046 1.6E-08 67.9 13.9 133 3-163 21-171 (375)
30 2p51_A SPCC18.06C protein; DED 97.7 0.00085 2.9E-08 65.5 15.3 159 3-165 44-259 (333)
31 3pv8_A DNA polymerase I; DNA p 97.7 7.5E-05 2.6E-09 78.2 8.1 130 5-162 30-181 (592)
32 1uoc_A POP2; hydrolase, DEDD n 97.7 0.00048 1.6E-08 66.1 13.0 157 3-162 37-265 (289)
33 1vk0_A Hypothetical protein; h 97.6 0.00025 8.7E-09 64.7 10.4 84 76-159 100-204 (206)
34 1s5j_A DNA polymerase I; repli 97.4 0.00094 3.2E-08 72.6 13.3 146 4-155 190-386 (847)
35 2hbj_A Exosome complex exonucl 97.4 0.00056 1.9E-08 68.4 9.7 88 75-163 150-255 (410)
36 3iay_A DNA polymerase delta ca 97.3 0.0011 3.7E-08 72.8 11.9 144 4-158 249-465 (919)
37 2a1r_A Poly(A)-specific ribonu 97.0 0.0019 6.4E-08 65.1 9.4 80 81-161 279-396 (430)
38 3qex_A DNA polymerase, GP43; d 96.9 0.0058 2E-07 66.8 12.8 153 4-157 108-337 (903)
39 3cym_A Uncharacterized protein 96.9 0.0098 3.3E-07 60.0 13.7 87 74-162 85-187 (440)
40 1x5o_A RNA binding motif, sing 96.9 0.0031 1.1E-07 50.6 8.0 66 180-247 26-95 (114)
41 2fc8_A NCL protein; structure 96.8 0.0019 6.4E-08 50.8 5.7 63 180-242 16-78 (102)
42 2gv9_A DNA polymerase; polymer 96.8 0.0087 3E-07 67.3 13.0 154 4-158 320-550 (1193)
43 4fxv_A ELAV-like protein 1; RN 96.6 0.0016 5.6E-08 51.8 4.0 61 181-242 21-85 (99)
44 2fc9_A NCL protein; structure 96.5 0.0032 1.1E-07 49.4 5.4 62 180-242 16-77 (101)
45 3k59_A POL II, DNA polymerase 96.5 0.024 8.1E-07 61.3 13.6 138 3-158 152-349 (786)
46 1x4e_A RNA binding motif, sing 96.5 0.004 1.4E-07 47.2 5.5 61 181-242 7-71 (85)
47 2dnh_A Bruno-like 5, RNA bindi 96.4 0.0049 1.7E-07 48.6 6.0 64 181-245 17-83 (105)
48 2e5h_A Zinc finger CCHC-type a 96.4 0.0048 1.6E-07 47.5 5.4 63 180-242 17-82 (94)
49 2d9p_A Polyadenylate-binding p 96.4 0.0053 1.8E-07 48.3 5.7 63 180-243 16-80 (103)
50 2lkz_A RNA-binding protein 5; 96.2 0.0041 1.4E-07 49.4 4.5 64 179-242 9-77 (95)
51 2cq3_A RNA-binding protein 9; 96.2 0.0042 1.4E-07 48.9 4.5 63 180-242 16-79 (103)
52 3nmr_A Cugbp ELAV-like family 96.2 0.0066 2.2E-07 51.2 6.1 93 181-273 5-105 (175)
53 1x4a_A Splicing factor, argini 96.2 0.0029 1E-07 50.4 3.6 62 180-242 23-85 (109)
54 4f25_A Polyadenylate-binding p 96.2 0.0022 7.5E-08 52.1 2.8 62 181-242 7-69 (115)
55 2cq0_A Eukaryotic translation 96.2 0.0084 2.9E-07 47.1 6.0 62 180-242 16-81 (103)
56 2dgv_A HnRNP M, heterogeneous 96.2 0.0045 1.5E-07 47.5 4.3 62 181-243 10-73 (92)
57 3md1_A Nuclear and cytoplasmic 96.2 0.0054 1.9E-07 46.0 4.6 62 181-243 3-68 (83)
58 2dgp_A Bruno-like 4, RNA bindi 96.1 0.01 3.6E-07 46.7 6.2 72 180-251 14-88 (106)
59 4a8x_A RNA-binding protein wit 96.1 0.0025 8.6E-08 48.4 2.4 62 181-242 6-71 (88)
60 1x5t_A Splicing factor 3B subu 96.1 0.0051 1.7E-07 47.6 4.3 61 181-242 7-72 (96)
61 3nmr_A Cugbp ELAV-like family 96.1 0.0063 2.2E-07 51.3 5.1 71 180-252 96-170 (175)
62 2dnz_A Probable RNA-binding pr 96.0 0.01 3.5E-07 45.8 5.7 63 181-243 7-72 (95)
63 3p5t_L Cleavage and polyadenyl 96.0 0.0049 1.7E-07 47.5 3.8 61 181-242 3-69 (90)
64 2ek1_A RNA-binding protein 12; 96.0 0.007 2.4E-07 46.7 4.7 64 180-243 16-82 (95)
65 2cqc_A Arginine/serine-rich sp 96.0 0.0054 1.9E-07 47.2 4.0 62 180-242 16-81 (95)
66 2cqp_A RNA-binding protein 12; 96.0 0.0064 2.2E-07 47.3 4.4 62 181-242 17-81 (98)
67 3bs9_A Nucleolysin TIA-1 isofo 96.0 0.0053 1.8E-07 46.5 3.7 61 181-242 8-72 (87)
68 2dgw_A Probable RNA-binding pr 96.0 0.0059 2E-07 46.9 4.0 60 181-242 12-73 (91)
69 1why_A Hypothetical protein ri 95.9 0.0054 1.9E-07 47.8 3.8 61 180-243 18-78 (97)
70 2do4_A Squamous cell carcinoma 95.9 0.0073 2.5E-07 47.2 4.5 60 181-242 19-82 (100)
71 2x1f_A MRNA 3'-END-processing 95.9 0.0062 2.1E-07 47.4 3.9 62 181-242 4-68 (96)
72 2cpe_A RNA-binding protein EWS 95.9 0.0081 2.8E-07 48.0 4.7 63 180-242 16-89 (113)
73 2la6_A RNA-binding protein FUS 95.9 0.0082 2.8E-07 46.9 4.7 62 181-243 15-88 (99)
74 1fjc_A Nucleolin RBD2, protein 95.9 0.0036 1.2E-07 48.5 2.5 60 180-242 17-77 (96)
75 2krb_A Eukaryotic translation 95.8 0.0058 2E-07 46.1 3.5 62 181-243 3-72 (81)
76 1x5s_A Cold-inducible RNA-bind 95.8 0.011 3.8E-07 46.2 5.2 62 181-242 14-78 (102)
77 1whw_A Hypothetical protein ri 95.8 0.0073 2.5E-07 47.0 4.0 62 181-242 10-74 (99)
78 3lqv_A PRE-mRNA branch site pr 95.8 0.0063 2.2E-07 48.8 3.7 62 181-243 10-72 (115)
79 2ywk_A Putative RNA-binding pr 95.8 0.0058 2E-07 47.2 3.3 62 180-242 17-81 (95)
80 2cqb_A Peptidyl-prolyl CIS-tra 95.8 0.0074 2.5E-07 47.3 4.0 62 181-242 14-78 (102)
81 2div_A TRNA selenocysteine ass 95.8 0.0054 1.9E-07 47.8 3.1 63 180-243 10-77 (99)
82 1x5u_A Splicing factor 3B subu 95.8 0.007 2.4E-07 47.7 3.8 62 180-242 16-81 (105)
83 2khc_A Testis-specific RNP-typ 95.8 0.0096 3.3E-07 48.0 4.7 63 180-242 41-106 (118)
84 2cph_A RNA binding motif prote 95.8 0.0089 3E-07 47.1 4.4 63 180-242 16-83 (107)
85 2dnm_A SRP46 splicing factor; 95.8 0.0062 2.1E-07 47.9 3.4 62 180-242 14-79 (103)
86 2cqi_A Nucleolysin TIAR; RNA r 95.7 0.0044 1.5E-07 48.8 2.5 61 180-242 16-79 (103)
87 2do0_A HnRNP M, heterogeneous 95.7 0.01 3.6E-07 47.3 4.8 60 181-242 17-80 (114)
88 2err_A Ataxin-2-binding protei 95.7 0.0053 1.8E-07 49.3 3.0 61 180-242 30-93 (109)
89 2cpf_A RNA binding motif prote 95.7 0.0069 2.4E-07 47.1 3.5 62 181-242 7-74 (98)
90 2kxn_B Transformer-2 protein h 95.7 0.014 4.7E-07 48.6 5.5 64 180-243 47-113 (129)
91 3mdf_A Peptidyl-prolyl CIS-tra 95.7 0.0058 2E-07 46.1 2.9 63 181-243 9-74 (85)
92 2e5g_A U6 snRNA-specific termi 95.7 0.0092 3.2E-07 46.2 4.2 59 181-242 10-68 (94)
93 2jrs_A RNA-binding protein 39; 95.7 0.0089 3E-07 48.0 4.1 63 180-242 27-92 (108)
94 1p27_B RNA-binding protein 8A; 95.7 0.0089 3E-07 47.1 4.1 61 181-242 25-89 (106)
95 2lxi_A RNA-binding protein 10; 95.7 0.0074 2.5E-07 47.0 3.5 60 181-240 3-66 (91)
96 2dgs_A DAZ-associated protein 95.7 0.013 4.4E-07 45.7 4.9 60 181-242 12-75 (99)
97 2mss_A Protein (musashi1); RNA 95.6 0.0096 3.3E-07 43.9 3.9 60 182-242 2-64 (75)
98 2cpj_A Non-POU domain-containi 95.6 0.0087 3E-07 46.8 3.7 60 180-243 16-76 (99)
99 1wg5_A Heterogeneous nuclear r 95.6 0.02 6.8E-07 45.4 5.8 60 180-240 16-78 (104)
100 3ulh_A THO complex subunit 4; 95.6 0.011 3.6E-07 46.8 4.1 61 181-243 31-95 (107)
101 2fy1_A RNA-binding motif prote 95.6 0.009 3.1E-07 48.6 3.7 62 181-243 9-73 (116)
102 3s8s_A Histone-lysine N-methyl 95.5 0.015 5E-07 47.2 4.8 62 181-243 8-73 (110)
103 1uaw_A Mouse-musashi-1; RNP-ty 95.5 0.011 3.8E-07 43.6 3.7 59 181-239 2-63 (77)
104 3ucg_A Polyadenylate-binding p 95.5 0.012 4.1E-07 44.6 4.1 64 178-242 5-71 (89)
105 1oo0_B CG8781-PA, drosophila Y 95.4 0.011 3.8E-07 47.0 3.8 62 181-242 28-92 (110)
106 1p1t_A Cleavage stimulation fa 95.4 0.0092 3.1E-07 46.8 3.3 65 178-243 7-75 (104)
107 2dhg_A TRNA selenocysteine ass 95.4 0.0099 3.4E-07 46.7 3.4 61 181-242 11-75 (104)
108 2dgo_A Cytotoxic granule-assoc 95.4 0.011 3.8E-07 47.3 3.8 62 180-242 16-81 (115)
109 2dnn_A RNA-binding protein 12; 95.4 0.023 8E-07 46.1 5.7 61 178-241 15-78 (109)
110 2cpz_A CUG triplet repeat RNA- 95.4 0.0099 3.4E-07 47.7 3.3 62 180-242 26-91 (115)
111 3ex7_B RNA-binding protein 8A; 95.3 0.013 4.4E-07 47.7 4.0 62 181-243 24-89 (126)
112 1x4c_A Splicing factor, argini 95.3 0.0088 3E-07 47.7 2.9 60 180-243 16-75 (108)
113 1whx_A Hypothetical protein ri 95.3 0.014 4.7E-07 47.1 4.0 66 181-252 12-77 (111)
114 2ytc_A PRE-mRNA-splicing facto 95.3 0.012 4E-07 44.5 3.4 60 180-242 13-73 (85)
115 1wg1_A KIAA1579 protein, homol 95.3 0.012 3.9E-07 45.2 3.4 58 181-242 7-64 (88)
116 1wez_A HnRNP H', FTP-3, hetero 95.3 0.018 6E-07 45.9 4.6 66 181-251 17-84 (102)
117 2dng_A Eukaryotic translation 95.3 0.024 8.1E-07 44.5 5.2 61 180-242 16-79 (103)
118 2dnq_A RNA-binding protein 4B; 95.2 0.014 4.8E-07 44.7 3.7 57 181-242 10-66 (90)
119 2dnl_A Cytoplasmic polyadenyla 95.2 0.019 6.6E-07 46.2 4.6 60 180-239 9-73 (114)
120 2e5j_A Methenyltetrahydrofolat 95.2 0.0067 2.3E-07 47.4 1.8 61 180-242 20-80 (97)
121 1wi8_A EIF-4B, eukaryotic tran 95.2 0.026 8.7E-07 44.4 5.3 61 180-242 16-80 (104)
122 2dgt_A RNA-binding protein 30; 95.2 0.011 3.8E-07 45.5 3.0 58 180-242 11-68 (92)
123 2cpi_A CCR4-NOT transcription 95.2 0.017 5.9E-07 46.3 4.2 62 181-242 17-87 (111)
124 1fje_B Nucleolin RBD12, protei 95.2 0.023 7.9E-07 48.1 5.3 61 180-242 100-160 (175)
125 2ki2_A SS-DNA binding protein 95.2 0.02 6.9E-07 43.7 4.4 68 181-252 3-73 (90)
126 2lmi_A GRSF-1, G-rich sequence 95.2 0.021 7.2E-07 45.5 4.7 60 181-242 13-78 (107)
127 1x4h_A RNA-binding protein 28; 95.2 0.017 5.7E-07 45.8 4.1 58 181-239 17-78 (111)
128 2j76_E EIF-4B, EIF4B, eukaryot 95.1 0.023 7.9E-07 44.6 4.7 62 179-242 19-84 (100)
129 2ku7_A MLL1 PHD3-CYP33 RRM chi 95.1 0.014 4.7E-07 48.1 3.5 63 180-242 64-129 (140)
130 3beg_B Splicing factor, argini 95.1 0.0093 3.2E-07 48.4 2.4 67 179-252 16-82 (115)
131 2jvr_A Nucleolar protein 3; RN 95.1 0.007 2.4E-07 49.6 1.7 61 181-242 30-91 (111)
132 2db1_A Heterogeneous nuclear r 95.1 0.025 8.4E-07 46.1 4.9 59 181-241 19-83 (118)
133 2cpd_A Apobec-1 stimulating pr 95.1 0.015 5.2E-07 45.3 3.5 57 181-242 17-75 (99)
134 2kvi_A Nuclear polyadenylated 95.0 0.016 5.6E-07 45.1 3.6 64 181-252 12-76 (96)
135 2jvo_A Nucleolar protein 3; nu 95.0 0.016 5.5E-07 46.6 3.6 58 181-243 33-90 (108)
136 2dgx_A KIAA0430 protein; RRM d 95.0 0.0094 3.2E-07 46.5 2.1 60 180-242 10-76 (96)
137 2la4_A Nuclear and cytoplasmic 95.0 0.013 4.3E-07 45.9 2.9 58 181-242 29-87 (101)
138 3s7r_A Heterogeneous nuclear r 95.0 0.017 5.9E-07 43.7 3.5 57 180-237 12-72 (87)
139 1s79_A Lupus LA protein; RRM, 95.0 0.026 8.7E-07 45.2 4.6 59 180-240 12-73 (103)
140 1wel_A RNA-binding protein 12; 95.0 0.016 5.6E-07 47.3 3.5 61 180-242 26-90 (124)
141 2cq2_A Hypothetical protein LO 95.0 0.0087 3E-07 49.6 1.9 60 181-243 27-88 (114)
142 2cq1_A PTB-like protein L; RRM 95.0 0.027 9.2E-07 45.1 4.8 57 181-240 17-73 (101)
143 2cpy_A RNA-binding protein 12; 94.9 0.024 8.1E-07 45.7 4.4 59 180-240 16-78 (114)
144 2kt5_A RNA and export factor-b 94.9 0.018 6.1E-07 46.9 3.6 62 180-242 36-100 (124)
145 2cq4_A RNA binding motif prote 94.9 0.023 8E-07 45.4 4.3 64 177-241 23-89 (114)
146 1wex_A Hypothetical protein (r 94.9 0.02 6.9E-07 46.1 3.9 58 181-241 17-74 (104)
147 2hvz_A Splicing factor, argini 94.9 0.0059 2E-07 47.8 0.7 57 181-242 2-61 (101)
148 2cqd_A RNA-binding region cont 94.9 0.021 7.1E-07 45.9 3.9 61 180-240 18-81 (116)
149 2dnp_A RNA-binding protein 14; 94.8 0.011 3.6E-07 45.4 1.9 57 181-242 11-67 (90)
150 1fxl_A Paraneoplastic encephal 94.8 0.0072 2.5E-07 50.4 0.9 61 181-242 90-154 (167)
151 3md3_A Nuclear and cytoplasmic 94.8 0.029 1E-06 46.5 4.7 62 181-243 89-154 (166)
152 1h2v_Z 20 kDa nuclear CAP bind 94.8 0.022 7.5E-07 48.3 3.9 63 180-243 40-106 (156)
153 1sjq_A Polypyrimidine tract-bi 94.7 0.014 4.6E-07 47.7 2.5 58 181-241 18-75 (105)
154 2nlw_A Eukaryotic translation 94.7 0.01 3.6E-07 47.1 1.7 62 180-242 16-85 (105)
155 2hgm_A HNRPF protein, heteroge 94.7 0.031 1.1E-06 46.8 4.7 55 181-237 44-103 (126)
156 1b7f_A Protein (SXL-lethal pro 94.7 0.032 1.1E-06 46.6 4.9 63 181-243 91-156 (168)
157 2cpx_A Hypothetical protein FL 94.7 0.012 4.2E-07 47.0 2.1 61 181-243 27-92 (115)
158 1u6f_A Tcubp1, RNA-binding pro 94.7 0.011 3.6E-07 49.1 1.7 63 179-242 42-108 (139)
159 2dgu_A Heterogeneous nuclear r 94.6 0.012 4.2E-07 46.3 1.9 57 181-242 13-69 (103)
160 2cqh_A IGF-II mRNA-binding pro 94.6 0.0097 3.3E-07 45.9 1.3 56 181-240 10-66 (93)
161 1fxl_A Paraneoplastic encephal 94.6 0.025 8.5E-07 47.0 3.9 62 181-243 4-69 (167)
162 1iqt_A AUF1, heterogeneous nuc 94.6 0.031 1.1E-06 40.9 4.0 56 182-237 2-60 (75)
163 2xnq_A Nuclear polyadenylated 94.5 0.023 7.9E-07 44.6 3.3 58 180-242 23-81 (97)
164 1nu4_A U1A RNA binding domain; 94.5 0.01 3.5E-07 45.9 1.1 61 181-242 10-75 (97)
165 3n9u_C Cleavage and polyadenyl 94.5 0.025 8.4E-07 48.8 3.7 63 179-242 55-123 (156)
166 3smz_A Protein raver-1, ribonu 94.4 0.088 3E-06 48.3 7.6 81 181-273 24-105 (284)
167 3md3_A Nuclear and cytoplasmic 94.3 0.019 6.4E-07 47.7 2.5 62 181-243 2-66 (166)
168 1x4g_A Nucleolysin TIAR; struc 94.3 0.017 5.9E-07 45.9 2.2 59 181-242 27-85 (109)
169 3r27_A HnRNP L, heterogeneous 94.3 0.024 8.2E-07 45.9 3.0 58 181-242 23-81 (100)
170 2hzc_A Splicing factor U2AF 65 94.2 0.021 7E-07 43.1 2.3 58 180-242 7-76 (87)
171 2jwn_A Embryonic polyadenylate 94.2 0.031 1.1E-06 45.3 3.6 62 179-242 36-101 (124)
172 3ns6_A Eukaryotic translation 94.2 0.016 5.6E-07 45.7 1.7 63 181-243 8-79 (100)
173 2dis_A Unnamed protein product 94.2 0.031 1E-06 44.2 3.3 59 181-239 10-73 (109)
174 4f02_A Polyadenylate-binding p 94.2 0.025 8.6E-07 50.3 3.1 61 181-242 105-167 (213)
175 2hgl_A HNRPF protein, heteroge 94.1 0.047 1.6E-06 46.2 4.6 61 180-242 45-111 (136)
176 1rk8_A CG8781-PA, CG8781-PA pr 94.1 0.034 1.2E-06 47.7 3.8 61 181-242 74-138 (165)
177 2qfj_A FBP-interacting repress 94.1 0.051 1.7E-06 47.4 5.0 61 181-242 127-191 (216)
178 2ad9_A Polypyrimidine tract-bi 94.1 0.028 9.4E-07 46.8 3.0 57 181-241 33-90 (119)
179 2dh8_A DAZ-associated protein 94.1 0.036 1.2E-06 43.6 3.5 60 180-241 17-80 (105)
180 1b7f_A Protein (SXL-lethal pro 94.1 0.025 8.5E-07 47.3 2.8 63 181-243 5-70 (168)
181 2cqg_A TDP-43, TAR DNA-binding 94.1 0.031 1E-06 43.8 3.1 56 181-237 17-76 (103)
182 2m2b_A RNA-binding protein 10; 94.0 0.026 9E-07 46.6 2.7 60 180-241 24-89 (131)
183 1fj7_A Nucleolin RBD1, protein 94.0 0.0099 3.4E-07 46.5 0.1 62 180-243 18-82 (101)
184 2dha_A FLJ20171 protein; RRM d 94.0 0.027 9.1E-07 46.9 2.7 57 181-240 25-89 (123)
185 3zzy_A Polypyrimidine tract-bi 94.0 0.044 1.5E-06 46.4 4.1 63 181-245 30-93 (130)
186 1x4d_A Matrin 3; structural ge 93.9 0.034 1.2E-06 44.8 3.1 57 181-241 17-75 (102)
187 2rs2_A Musashi-1, RNA-binding 93.9 0.054 1.8E-06 43.4 4.3 60 179-238 25-87 (109)
188 1x4b_A Heterogeneous nuclear r 93.9 0.05 1.7E-06 43.5 4.2 60 178-237 26-88 (116)
189 2hgn_A Heterogeneous nuclear r 93.9 0.035 1.2E-06 47.2 3.3 66 181-251 48-115 (139)
190 2kn4_A Immunoglobulin G-bindin 93.8 0.027 9.2E-07 47.5 2.5 62 181-242 72-136 (158)
191 1x4f_A Matrin 3; structural ge 93.8 0.048 1.6E-06 44.9 3.9 57 181-241 27-85 (112)
192 3egn_A RNA-binding protein 40; 93.8 0.018 6.2E-07 48.1 1.3 61 181-242 47-116 (143)
193 2lea_A Serine/arginine-rich sp 93.8 0.023 7.9E-07 47.5 2.0 63 180-242 48-113 (135)
194 2qfj_A FBP-interacting repress 93.7 0.059 2E-06 47.0 4.6 63 179-242 28-94 (216)
195 2ghp_A U4/U6 snRNA-associated 93.7 0.07 2.4E-06 49.2 5.3 86 179-273 41-127 (292)
196 1wf1_A RNA-binding protein RAL 93.7 0.024 8.2E-07 45.1 1.8 58 180-242 28-86 (110)
197 3sde_A Paraspeckle component 1 93.6 0.088 3E-06 48.3 5.8 61 179-243 22-83 (261)
198 2lcw_A RNA-binding protein FUS 92.7 0.012 4.2E-07 47.3 0.0 63 180-242 8-81 (116)
199 2i2y_A Fusion protein consists 93.6 0.027 9.2E-07 47.4 2.1 67 180-252 74-141 (150)
200 2g4b_A Splicing factor U2AF 65 93.5 0.039 1.3E-06 46.3 3.0 63 180-243 95-161 (172)
201 3tyt_A Heterogeneous nuclear r 93.4 0.031 1.1E-06 50.1 2.2 67 181-249 125-196 (205)
202 2a3j_A U1 small nuclear ribonu 93.3 0.037 1.3E-06 46.3 2.5 68 181-252 31-103 (127)
203 2cjk_A Nuclear polyadenylated 93.3 0.061 2.1E-06 44.9 3.8 58 180-237 4-64 (167)
204 2e44_A Insulin-like growth fac 93.3 0.023 7.8E-07 43.9 1.0 66 181-252 17-85 (96)
205 1sjr_A Polypyrimidine tract-bi 93.3 0.04 1.4E-06 48.5 2.7 62 181-244 48-110 (164)
206 3q2s_C Cleavage and polyadenyl 93.2 0.047 1.6E-06 49.9 3.2 63 179-242 68-136 (229)
207 4f02_A Polyadenylate-binding p 93.1 0.067 2.3E-06 47.5 3.9 64 180-243 16-82 (213)
208 1l3k_A Heterogeneous nuclear r 93.0 0.064 2.2E-06 46.0 3.6 58 179-237 13-74 (196)
209 2f3j_A RNA and export factor b 92.8 0.058 2E-06 47.3 3.1 63 180-243 89-154 (177)
210 2diu_A KIAA0430 protein; struc 92.8 0.071 2.4E-06 43.0 3.3 60 182-252 12-77 (96)
211 3sde_A Paraspeckle component 1 92.8 0.078 2.7E-06 48.6 4.1 69 181-251 98-171 (261)
212 2xs2_A Deleted in azoospermia- 92.7 0.024 8.1E-07 44.4 0.4 55 181-236 11-68 (102)
213 2voo_A Lupus LA protein; RNA-b 92.6 0.13 4.3E-06 45.7 5.1 60 179-238 109-170 (193)
214 2g4b_A Splicing factor U2AF 65 92.4 0.059 2E-06 45.2 2.4 62 180-243 5-75 (172)
215 2e5i_A Heterogeneous nuclear r 92.3 0.13 4.4E-06 43.0 4.4 60 181-244 27-88 (124)
216 3pgw_S U1-70K; protein-RNA com 92.1 0.098 3.3E-06 52.5 4.1 63 180-243 103-169 (437)
217 3pgw_A U1-A; protein-RNA compl 91.9 0.12 4E-06 47.5 4.0 61 181-243 209-269 (282)
218 3tyt_A Heterogeneous nuclear r 91.8 0.13 4.5E-06 45.9 4.2 60 181-243 6-67 (205)
219 2yh0_A Splicing factor U2AF 65 91.8 0.083 2.8E-06 45.3 2.7 62 180-242 115-180 (198)
220 3pgw_A U1-A; protein-RNA compl 91.7 0.16 5.3E-06 46.6 4.7 61 181-242 11-76 (282)
221 3smz_A Protein raver-1, ribonu 91.7 0.19 6.6E-06 46.0 5.3 61 181-243 186-251 (284)
222 2yh0_A Splicing factor U2AF 65 91.2 0.063 2.1E-06 46.1 1.3 61 180-242 5-74 (198)
223 1wf0_A TDP-43, TAR DNA-binding 90.9 0.12 4.2E-06 39.1 2.6 50 181-233 7-57 (88)
224 1l3k_A Heterogeneous nuclear r 90.8 0.24 8.1E-06 42.4 4.7 56 181-237 106-165 (196)
225 3tht_A Alkylated DNA repair pr 90.8 0.15 5.3E-06 49.8 3.9 66 181-249 20-87 (345)
226 2cjk_A Nuclear polyadenylated 90.8 0.12 4.1E-06 43.0 2.7 56 181-236 89-147 (167)
227 1qm9_A Polypyrimidine tract-bi 90.5 0.1 3.5E-06 45.1 2.1 60 181-243 5-66 (198)
228 2wbr_A GW182, gawky, LD47780P; 90.5 0.11 3.7E-06 41.3 2.0 54 181-240 9-65 (89)
229 3d2w_A TAR DNA-binding protein 90.4 0.26 9E-06 37.9 4.2 50 180-232 12-62 (89)
230 2adc_A Polypyrimidine tract-bi 90.4 0.1 3.5E-06 46.8 2.0 61 180-243 35-97 (229)
231 1qm9_A Polypyrimidine tract-bi 89.9 0.17 5.8E-06 43.7 2.9 65 181-252 122-190 (198)
232 2adc_A Polypyrimidine tract-bi 89.6 0.23 7.9E-06 44.4 3.7 60 181-243 153-214 (229)
233 2py5_A DNA polymerase; protein 89.4 0.74 2.5E-05 47.8 7.8 69 2-100 4-72 (575)
234 1fje_B Nucleolin RBD12, protei 89.2 0.053 1.8E-06 45.9 -0.9 62 180-243 14-78 (175)
235 1x5p_A Negative elongation fac 89.0 0.36 1.2E-05 37.2 4.0 57 181-242 17-73 (97)
236 2ghp_A U4/U6 snRNA-associated 88.7 0.23 7.9E-06 45.7 3.1 61 181-242 212-277 (292)
237 2d9o_A DNAJ (HSP40) homolog, s 84.9 0.93 3.2E-05 36.1 4.3 49 189-240 27-76 (100)
238 2pe8_A Splicing factor 45; RRM 84.7 1 3.5E-05 35.9 4.5 51 193-243 27-81 (105)
239 1bgx_T TAQ DNA polymerase; DNA 84.1 1.4 4.8E-05 47.8 6.6 78 74-162 340-420 (832)
240 2l08_A Regulator of nonsense t 83.8 2.4 8.1E-05 34.1 6.2 70 181-250 11-85 (97)
241 1jmt_A Splicing factor U2AF 35 83.6 0.42 1.4E-05 38.1 1.7 26 217-242 67-92 (104)
242 2bz2_A Negative elongation fac 82.7 0.81 2.8E-05 37.3 3.1 57 181-243 41-98 (121)
243 3v4m_A Splicing factor U2AF 65 82.1 1.2 4.2E-05 35.4 4.0 33 217-252 58-90 (105)
244 3u1l_A PRE-mRNA-splicing facto 81.6 0.57 2E-05 43.4 2.0 60 181-243 136-204 (240)
245 3s6e_A RNA-binding protein 39; 80.1 1.2 4.2E-05 36.2 3.4 26 218-243 55-80 (114)
246 1owx_A Lupus LA protein, SS-B, 79.9 2.6 9E-05 35.0 5.3 54 182-238 21-76 (121)
247 2dit_A HIV TAT specific factor 78.1 1.5 5.2E-05 34.7 3.3 47 194-243 41-89 (112)
248 1uw4_A UPF3X; nonsense mediate 76.9 1.6 5.6E-05 34.5 3.0 69 181-249 3-76 (91)
249 3nmd_A CGMP dependent protein 76.6 1.9 6.3E-05 32.9 3.1 31 325-355 21-51 (72)
250 2j8a_A Histone-lysine N-methyl 74.5 1.2 4.1E-05 38.0 1.8 59 181-240 4-80 (136)
251 3q7c_A Nucleoprotein; deddh ex 73.2 2.7 9.2E-05 38.4 3.8 148 2-162 55-218 (243)
252 3ue2_A Poly(U)-binding-splicin 70.2 3.3 0.00011 33.7 3.5 32 218-252 71-102 (118)
253 4dzn_A Coiled-coil peptide CC- 66.6 6.5 0.00022 24.7 3.4 28 324-358 3-30 (33)
254 3mwp_A Nucleoprotein; structur 61.3 6.2 0.00021 39.8 4.0 148 2-162 389-552 (577)
255 3a7o_A Autophagy protein 16; c 61.2 6.5 0.00022 29.8 3.1 34 323-356 18-51 (75)
256 3ikm_A DNA polymerase subunit 59.8 1.6 5.6E-05 48.4 -0.5 78 82-159 193-344 (1172)
257 1whv_A Poly(A)-specific ribonu 56.5 8.8 0.0003 31.0 3.4 49 186-239 22-70 (100)
258 3ctr_A Poly(A)-specific ribonu 47.0 11 0.00038 30.4 2.6 49 186-239 12-60 (101)
259 3hnw_A Uncharacterized protein 45.7 23 0.00078 29.9 4.5 40 320-359 86-125 (138)
260 2q6q_A Spindle POLE BODY compo 43.7 13 0.00046 27.9 2.4 30 326-355 6-35 (74)
261 3dxb_A Thioredoxin N-terminall 38.6 22 0.00077 31.0 3.6 32 218-252 175-206 (222)
262 1g6u_A Domain swapped dimer; d 38.5 20 0.00068 24.2 2.4 34 324-357 8-47 (48)
263 1gmj_A ATPase inhibitor; coile 36.9 40 0.0014 26.3 4.2 16 317-332 52-67 (84)
264 3he5_A Synzip1; heterodimeric 36.4 20 0.00068 24.3 2.1 30 325-355 19-49 (49)
265 1xnl_A ASLV/FP, membrane prote 36.3 14 0.00047 22.9 1.2 11 318-328 17-27 (29)
266 4emc_A Monopolin complex subun 35.6 28 0.00095 31.1 3.6 37 322-358 26-62 (190)
267 1wlq_A Geminin; coiled-coil; 2 34.7 20 0.0007 27.9 2.2 45 309-353 24-68 (83)
268 1use_A VAsp, vasodilator-stimu 33.3 44 0.0015 23.1 3.5 9 323-331 7-15 (45)
269 3he5_B Synzip2; heterodimeric 33.0 43 0.0015 22.9 3.4 36 322-357 9-44 (52)
270 3hnw_A Uncharacterized protein 31.5 46 0.0016 28.0 4.2 50 309-360 60-112 (138)
271 3vmx_A Voltage-gated hydrogen 30.3 30 0.001 24.2 2.3 25 310-334 19-43 (48)
272 2l9w_A U4/U6 snRNA-associated- 30.1 19 0.00065 29.8 1.5 68 182-252 24-93 (117)
273 2l5g_B Putative uncharacterize 26.9 39 0.0013 23.0 2.3 33 327-359 6-38 (42)
274 2kn4_A Immunoglobulin G-bindin 26.0 40 0.0014 27.5 2.8 28 216-243 11-38 (158)
275 2a1r_A Poly(A)-specific ribonu 25.5 32 0.0011 34.2 2.4 14 4-17 22-35 (430)
276 3ra3_A P1C; coiled coil domain 24.9 35 0.0012 20.7 1.5 23 336-358 6-28 (28)
277 3iv1_A Tumor susceptibility ge 23.1 63 0.0022 24.8 3.2 23 336-358 52-74 (78)
278 1a93_B MAX protein, coiled coi 23.1 35 0.0012 22.2 1.4 22 319-340 10-31 (34)
279 3efg_A Protein SLYX homolog; x 22.7 30 0.001 26.4 1.3 51 301-357 12-62 (78)
280 3ra3_B P2F; coiled coil domain 22.5 22 0.00075 21.5 0.4 18 326-343 10-27 (28)
281 3vp9_A General transcriptional 22.3 36 0.0012 27.0 1.7 19 322-340 74-92 (92)
282 3d45_A Poly(A)-specific ribonu 22.2 35 0.0012 34.6 2.0 14 4-17 24-37 (507)
283 3a2a_A Voltage-gated hydrogen 21.0 56 0.0019 23.5 2.3 35 300-334 15-50 (58)
No 1
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=100.00 E-value=1.8e-33 Score=253.76 Aligned_cols=157 Identities=32% Similarity=0.459 Sum_probs=136.0
Q ss_pred CCcEEEEEEeccCCCCCc-ccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhcCCCCCHHHHHHHHHHhhc
Q 017922 3 SNIMYAVDCEMVLCEDGS-EGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLS 81 (364)
Q Consensus 3 ~~~~ValD~ETTGl~~g~-~~Ii~V~vVd~~G~vi~d~lVkP~~~I~d~~t~itGIT~e~L~~ap~~~~eV~~el~~fl~ 81 (364)
..+||+|||||||+++.. .+|++|++|+.+|+++|++||+|..+|+++++.+||||++||.++| +|.+|+++|.+|+
T Consensus 4 ~~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~-~~~~v~~~~~~~l- 81 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGAT-PFAVARLEILQLL- 81 (189)
T ss_dssp --CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCE-EHHHHHHHHHHHH-
T ss_pred CCeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCC-CHHHHHHHHHHHH-
Confidence 358999999999998764 4789999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCEEEEechhhHHHHHcccCCC--ccchHHHhh--h--hcC-CCCccHHHHHHHHhCCccCCCCCCCChHHHHHHHHHH
Q 017922 82 NGTILVGHSLNNDLEVLKLDHPR--VIDTSLIFK--Y--VDE-YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKL 154 (364)
Q Consensus 82 ~~~iLVGHn~~fDl~fL~~~~~~--vIDT~~L~r--~--~~~-~~~~sL~~L~k~~Lgi~i~~~~~~H~Al~DA~Ata~L 154 (364)
++++|||||+.||++||+..+|+ ++||+.+++ . ..| ..+++|+.||+.+||++++.++.+|+|++||++|++|
T Consensus 82 ~~~~lV~hn~~fD~~~L~~~~~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l 161 (189)
T 1wlj_A 82 KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMEL 161 (189)
T ss_dssp TTSEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHH
T ss_pred CCCEEEECCcHHHHHHHHHhCCCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHH
Confidence 89999999999999999998886 799998754 2 233 4789999999666899987422289999999999999
Q ss_pred HHHHHHh
Q 017922 155 VLAIIER 161 (364)
Q Consensus 155 ~~~~le~ 161 (364)
|.++++.
T Consensus 162 ~~~l~~~ 168 (189)
T 1wlj_A 162 YQISQRI 168 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 2
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.97 E-value=2.4e-31 Score=239.07 Aligned_cols=155 Identities=25% Similarity=0.334 Sum_probs=137.4
Q ss_pred CCcEEEEEEeccCCCCCcccEEEEEEEEc-CCcEE--EEEEEcCCCcccccccccCCCChhhhcCCCCCHHHHHHHHHHh
Q 017922 3 SNIMYAVDCEMVLCEDGSEGLVRLCVVDR-NLKVT--IDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKL 79 (364)
Q Consensus 3 ~~~~ValD~ETTGl~~g~~~Ii~V~vVd~-~G~vi--~d~lVkP~~~I~d~~t~itGIT~e~L~~ap~~~~eV~~el~~f 79 (364)
..+||+|||||||+++..++|++|++|.. +|+++ |++||+|..+|+++++.+||||+++|.++| ++.+|+++|.+|
T Consensus 11 ~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~-~~~~v~~~~~~~ 89 (186)
T 2p1j_A 11 DATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKR-SIEEVLPEFLGF 89 (186)
T ss_dssp --CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCC-BHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCC-CHHHHHHHHHHH
Confidence 46899999999999987778999999986 67765 899999999999999999999999999999 999999999999
Q ss_pred hcCCCEEEEechhhHHHHHccc---------CCCccchHHHhhhhcCCCCccHHHHHHHHhCCccCCCCCCCChHHHHHH
Q 017922 80 LSNGTILVGHSLNNDLEVLKLD---------HPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASA 150 (364)
Q Consensus 80 l~~~~iLVGHn~~fDl~fL~~~---------~~~vIDT~~L~r~~~~~~~~sL~~L~k~~Lgi~i~~~~~~H~Al~DA~A 150 (364)
+ ++.+|||||+.||+.||+.. ..+++||..+++..++..+++|..|| +++|++... +|+|++||++
T Consensus 90 l-~~~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~~~~~~~L~~l~-~~~gi~~~~---~H~Al~Da~~ 164 (186)
T 2p1j_A 90 L-EDSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLKLRSYSLDSVV-EKLGLGPFR---HHRALDDARV 164 (186)
T ss_dssp S-SSCEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHTCCSCCSHHHHH-HHTTCCSTT---CCHHHHHHHH
T ss_pred H-CCCEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHhhcCCCCHHHHH-HHcCCCCCC---CcCHHHHHHH
Confidence 9 89999999999999999852 23589999999988766789999999 678998753 7999999999
Q ss_pred HHHHHHHHHHhcc
Q 017922 151 AMKLVLAIIERRV 163 (364)
Q Consensus 151 ta~L~~~~le~g~ 163 (364)
|++||.++++.+.
T Consensus 165 t~~l~~~l~~~~~ 177 (186)
T 2p1j_A 165 TAQVFLRFVEMMK 177 (186)
T ss_dssp HHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876654
No 3
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.97 E-value=1.2e-30 Score=235.10 Aligned_cols=155 Identities=20% Similarity=0.271 Sum_probs=135.3
Q ss_pred CCcEEEEEEeccCCCC-----CcccEEEEEEEEc-CCcE---EEEEEEcCCCcccccccccCCCChhhhcCCCCCHHHHH
Q 017922 3 SNIMYAVDCEMVLCED-----GSEGLVRLCVVDR-NLKV---TIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQ 73 (364)
Q Consensus 3 ~~~~ValD~ETTGl~~-----g~~~Ii~V~vVd~-~G~v---i~d~lVkP~~~I~d~~t~itGIT~e~L~~ap~~~~eV~ 73 (364)
..+||+|||||||+++ ..++|++|++|.. +|.+ .|++||+|..+|+++++.+||||++||.++| +|.+|+
T Consensus 8 ~~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~~~~~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~-~~~~v~ 86 (194)
T 2gui_A 8 ITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKP-TFAEVA 86 (194)
T ss_dssp CCEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTSC-CHHHHH
T ss_pred cCCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECCeEeccEEEEEECcCCcCCHHHHHhhCcCHHHHhCCC-CHHHHH
Confidence 4679999999999988 3468999999987 5554 3999999999999999999999999999999 999999
Q ss_pred HHHHHhhcCCCEEEEechhhHHHHHccc-------C------CCccchHHHhhhhcCCCCccHHHHHHHHhCCccCCCCC
Q 017922 74 KRMKKLLSNGTILVGHSLNNDLEVLKLD-------H------PRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGT 140 (364)
Q Consensus 74 ~el~~fl~~~~iLVGHn~~fDl~fL~~~-------~------~~vIDT~~L~r~~~~~~~~sL~~L~k~~Lgi~i~~~~~ 140 (364)
.+|.+|+ ++.+|||||+.||+.||+.. . .+++||..+++..+|..+++|..|| ++||++... +.
T Consensus 87 ~~~~~~l-~~~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~~~~L~~l~-~~~gi~~~~-~~ 163 (194)
T 2gui_A 87 DEFMDYI-RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALC-ARYEIDNSK-RT 163 (194)
T ss_dssp HHHHHHH-TTSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHH-HHTTCCCTT-CS
T ss_pred HHHHHHH-CCCeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCCCCCHHHHH-HHcCcCCCC-CC
Confidence 9999999 89999999999999999852 1 2479999999998886678999999 678998752 13
Q ss_pred CCChHHHHHHHHHHHHHHHHh
Q 017922 141 PHNCLDDASAAMKLVLAIIER 161 (364)
Q Consensus 141 ~H~Al~DA~Ata~L~~~~le~ 161 (364)
+|+|++||++|++||.+++++
T Consensus 164 ~H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 164 LHGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp SCCHHHHHHHHHHHHHHHTC-
T ss_pred CCChHHHHHHHHHHHHHHHhc
Confidence 799999999999999887643
No 4
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.96 E-value=1.1e-29 Score=229.87 Aligned_cols=161 Identities=17% Similarity=0.299 Sum_probs=136.7
Q ss_pred CCcEEEEEEeccCCCC----CcccEEEEEEEEc---CCcEE--EEEEEcCCC--cccccccccCCCChhhhcCCCCCHHH
Q 017922 3 SNIMYAVDCEMVLCED----GSEGLVRLCVVDR---NLKVT--IDELVKPEK--AVADYRSEITGLTADDLVGVTCSLAE 71 (364)
Q Consensus 3 ~~~~ValD~ETTGl~~----g~~~Ii~V~vVd~---~G~vi--~d~lVkP~~--~I~d~~t~itGIT~e~L~~ap~~~~e 71 (364)
...||+||+||||+++ ..++|++|++|.. +|+++ |++||+|.. +|+++++.+||||++||.++| +|.+
T Consensus 9 ~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~-~~~~ 87 (204)
T 1w0h_A 9 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRAD-TFPQ 87 (204)
T ss_dssp SSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSB-CHHH
T ss_pred cCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCC-CHHH
Confidence 4579999999999986 4468999998765 68876 999999998 999999999999999999999 9999
Q ss_pred HHHHHHHhhcCCC------EEEEechhhHHH-HHccc-------CC----CccchHHHhhhhcC--CCCccHHHHHHHHh
Q 017922 72 IQKRMKKLLSNGT------ILVGHSLNNDLE-VLKLD-------HP----RVIDTSLIFKYVDE--YRRPSLYNLCKSVL 131 (364)
Q Consensus 72 V~~el~~fl~~~~------iLVGHn~~fDl~-fL~~~-------~~----~vIDT~~L~r~~~~--~~~~sL~~L~k~~L 131 (364)
|+.+|.+|+.+.. ++||||+.||++ ||+.. .| +++||..+++..++ ..+++|..|| .++
T Consensus 88 v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~-~~~ 166 (204)
T 1w0h_A 88 VLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKL 166 (204)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHH-HHT
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHH-HHc
Confidence 9999999994332 599999999997 99752 23 47999999998776 2468999999 778
Q ss_pred CCccCCCCCCCChHHHHHHHHHHHHHHHHhcccCCC
Q 017922 132 GYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAV 167 (364)
Q Consensus 132 gi~i~~~~~~H~Al~DA~Ata~L~~~~le~g~~~~i 167 (364)
|++.. +.+|+|++||++|++||.++++.+....+
T Consensus 167 gi~~~--~~~H~Al~Da~~ta~l~~~l~~~~~~~~i 200 (204)
T 1w0h_A 167 GMDYD--GRPHCGLDDSKNIARIAVRMLQDGCELRI 200 (204)
T ss_dssp TCCCC--SCTTCHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCCCC--CCccCcHHHHHHHHHHHHHHHHCCCeeee
Confidence 99876 23799999999999999999987755443
No 5
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.96 E-value=1.5e-29 Score=237.51 Aligned_cols=152 Identities=18% Similarity=0.242 Sum_probs=130.8
Q ss_pred CcEEEEEEeccCCCCCcccEEEEEEEEcC-C-------------------cE--EEEEEEcCCCcccccccccCCCChhh
Q 017922 4 NIMYAVDCEMVLCEDGSEGLVRLCVVDRN-L-------------------KV--TIDELVKPEKAVADYRSEITGLTADD 61 (364)
Q Consensus 4 ~~~ValD~ETTGl~~g~~~Ii~V~vVd~~-G-------------------~v--i~d~lVkP~~~I~d~~t~itGIT~e~ 61 (364)
..||+||+||||+++..++|++|++|..+ | ++ .|++||+|..+|+++++.+||||++|
T Consensus 12 ~~~vv~D~ETTGl~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~~~~~i~GIt~~~ 91 (242)
T 3mxm_B 12 QTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKAE 91 (242)
T ss_dssp SEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCHHHHHHHCCCHHH
T ss_pred ceEEEEEeecCCCCCCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCCCCCHHHHHhcCCCHHH
Confidence 46999999999999888899999999762 2 22 58999999999999999999999999
Q ss_pred hcCC--CCCHH-HHHHHHHHhhcCC----CEEEEech-hhHHHHHccc-------CC----CccchHHHhhhhc------
Q 017922 62 LVGV--TCSLA-EIQKRMKKLLSNG----TILVGHSL-NNDLEVLKLD-------HP----RVIDTSLIFKYVD------ 116 (364)
Q Consensus 62 L~~a--p~~~~-eV~~el~~fl~~~----~iLVGHn~-~fDl~fL~~~-------~~----~vIDT~~L~r~~~------ 116 (364)
|.++ | +|. +|+++|.+|+ ++ .+|||||+ .||+.||+.. .+ .++||+.+++.+.
T Consensus 92 l~~~g~p-~~~~ev~~~~~~fl-~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~ 169 (242)
T 3mxm_B 92 LEVQGRQ-RFDDNLAILLRAFL-QRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS 169 (242)
T ss_dssp HHHTTCC-CSCHHHHHHHHHHH-HTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC-
T ss_pred HHhcCCC-chhHHHHHHHHHHH-hcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCcc
Confidence 9999 7 896 9999999999 67 89999995 9999999863 11 3699999888643
Q ss_pred --C-CCCccHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHH
Q 017922 117 --E-YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIE 160 (364)
Q Consensus 117 --~-~~~~sL~~L~k~~Lgi~i~~~~~~H~Al~DA~Ata~L~~~~le 160 (364)
+ ..+|+|..||++++|++... +|+|++||++|++||+++.+
T Consensus 170 ~~~~~~~~~L~~l~~~~~gi~~~~---~H~Al~Da~ata~l~~~~~~ 213 (242)
T 3mxm_B 170 GNGSRKSYSLGSIYTRLYWQAPTD---SHTAEGDDLTLLSICQWKPQ 213 (242)
T ss_dssp -----CCCSHHHHHHHHHSSCCSS---TTSHHHHHHHHHHHHTSSHH
T ss_pred ccCCCCCcCHHHHHHHHhCCCCCC---CcChHHHHHHHHHHHHHHHH
Confidence 2 57899999998879999863 89999999999999987664
No 6
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.95 E-value=3.3e-28 Score=225.60 Aligned_cols=153 Identities=20% Similarity=0.250 Sum_probs=128.0
Q ss_pred CcEEEEEEeccCCCCCcccEEEEEEEEcCC-----------------cE--EEEEEEcCCCcccccccccCCCChhhh--
Q 017922 4 NIMYAVDCEMVLCEDGSEGLVRLCVVDRNL-----------------KV--TIDELVKPEKAVADYRSEITGLTADDL-- 62 (364)
Q Consensus 4 ~~~ValD~ETTGl~~g~~~Ii~V~vVd~~G-----------------~v--i~d~lVkP~~~I~d~~t~itGIT~e~L-- 62 (364)
..||+|||||||+++..++|++|++|..++ ++ .|++||+|..+|+++++.+||||++||
T Consensus 10 ~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~ 89 (238)
T 1y97_A 10 ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSSEGLAR 89 (238)
T ss_dssp SEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCHHHHHH
T ss_pred CeEEEEEeeCCCcCCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCCcCCHHHHHHhCCCHHHHhh
Confidence 479999999999998777899999997632 43 399999999999999999999999999
Q ss_pred cCCCCCH-HHHHHHHHHhhcCC----CEEEEech-hhHHHHHccc-------CC---CccchHHHhhhhc---------C
Q 017922 63 VGVTCSL-AEIQKRMKKLLSNG----TILVGHSL-NNDLEVLKLD-------HP---RVIDTSLIFKYVD---------E 117 (364)
Q Consensus 63 ~~ap~~~-~eV~~el~~fl~~~----~iLVGHn~-~fDl~fL~~~-------~~---~vIDT~~L~r~~~---------~ 117 (364)
.++| +| .+|++.|.+|+ .+ .+|||||+ .||+.||+.. .+ .++||..+++.+. |
T Consensus 90 ~~~p-~f~~~v~~~l~~fl-~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p 167 (238)
T 1y97_A 90 CRKA-GFDGAVVRTLQAFL-SRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRAR 167 (238)
T ss_dssp TTCC-CSCHHHHHHHHHHH-TTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC-------
T ss_pred cCCC-ccHHHHHHHHHHHH-HhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCC
Confidence 5788 88 59999999999 54 89999999 9999999863 22 3799999999876 4
Q ss_pred -CCCccHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHh
Q 017922 118 -YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIER 161 (364)
Q Consensus 118 -~~~~sL~~L~k~~Lgi~i~~~~~~H~Al~DA~Ata~L~~~~le~ 161 (364)
..+++|..||++++|++... +|+|++||++|++||.++++.
T Consensus 168 ~~~~~~L~~l~~~~~gi~~~~---~H~Al~Da~~ta~l~~~l~~~ 209 (238)
T 1y97_A 168 GRQGYSLGSLFHRYFRAEPSA---AHSAEGDVHTLLLIFLHRAAE 209 (238)
T ss_dssp ---CCSHHHHHHHHHSSCCC------CHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCHHHHHHHHhCCCCcc---CccHHHHHHHHHHHHHHHHHH
Confidence 57899999996578998753 799999999999999988754
No 7
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.95 E-value=2.5e-28 Score=237.78 Aligned_cols=153 Identities=17% Similarity=0.208 Sum_probs=129.8
Q ss_pred CcEEEEEEeccCCCCCcccEEEEEEEEcC-C-------------------c--EEEEEEEcCCCcccccccccCCCChhh
Q 017922 4 NIMYAVDCEMVLCEDGSEGLVRLCVVDRN-L-------------------K--VTIDELVKPEKAVADYRSEITGLTADD 61 (364)
Q Consensus 4 ~~~ValD~ETTGl~~g~~~Ii~V~vVd~~-G-------------------~--vi~d~lVkP~~~I~d~~t~itGIT~e~ 61 (364)
..||+||+||||+++..++|++|++|..+ + + ..|++||+|+.+|+.+++.+||||++|
T Consensus 12 ~tfVv~DlETTGL~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhGIT~e~ 91 (314)
T 3u3y_B 12 QTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKAE 91 (314)
T ss_dssp SEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHSCCHHH
T ss_pred CCEEEEEEECCCCCCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcCCCHHH
Confidence 46999999999999888899999999763 2 1 358999999999999999999999999
Q ss_pred hcCC--CCCH-HHHHHHHHHhhcCC----CEEEEec-hhhHHHHHccc-------CC----CccchHHHhh----hhcC-
Q 017922 62 LVGV--TCSL-AEIQKRMKKLLSNG----TILVGHS-LNNDLEVLKLD-------HP----RVIDTSLIFK----YVDE- 117 (364)
Q Consensus 62 L~~a--p~~~-~eV~~el~~fl~~~----~iLVGHn-~~fDl~fL~~~-------~~----~vIDT~~L~r----~~~~- 117 (364)
|+++ | +| .+|+++|.+|+ ++ .+||||| +.||+.||+.. .+ .++||..+++ ..++
T Consensus 92 l~~aG~P-~f~~ev~~~l~~fL-~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~ 169 (314)
T 3u3y_B 92 LEVQGRQ-RFDDNLAILLRAFL-QRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS 169 (314)
T ss_dssp HHHTTCC-BSCHHHHHHHHHHH-HTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC---
T ss_pred HHhCCCC-CcHHHHHHHHHHHH-hcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCcc
Confidence 9999 7 89 79999999999 66 8999999 99999999863 11 2689988655 3333
Q ss_pred ----CCCccHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHh
Q 017922 118 ----YRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIER 161 (364)
Q Consensus 118 ----~~~~sL~~L~k~~Lgi~i~~~~~~H~Al~DA~Ata~L~~~~le~ 161 (364)
..+|+|.+||++++|++..+ +|+|++||++|++||+++.+.
T Consensus 170 ~~~~~~~~~L~~L~~~l~gi~~~~---aHrAl~DA~ata~lf~~l~~~ 214 (314)
T 3u3y_B 170 GNGSRKSYSLGSIYTRLYWQAPTD---SHTAEGHVLTLLSICQWKPQA 214 (314)
T ss_dssp ----CCCCSHHHHHHHHHSSCCSC---SSSHHHHHHHHHHHHHSSHHH
T ss_pred ccccCCCCCHHHHHHHhcCCCCCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 37899999996668999864 899999999999999877654
No 8
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.95 E-value=1.7e-27 Score=219.56 Aligned_cols=154 Identities=20% Similarity=0.242 Sum_probs=132.0
Q ss_pred CCcEEEEEEeccCCCCCcccEEEEEEEEc----CCcE----EEEEEEcC--CCcccccccccCCCChh-hhcCCCCCHHH
Q 017922 3 SNIMYAVDCEMVLCEDGSEGLVRLCVVDR----NLKV----TIDELVKP--EKAVADYRSEITGLTAD-DLVGVTCSLAE 71 (364)
Q Consensus 3 ~~~~ValD~ETTGl~~g~~~Ii~V~vVd~----~G~v----i~d~lVkP--~~~I~d~~t~itGIT~e-~L~~ap~~~~e 71 (364)
...||+||+||||+++..++|++|++|.. +|++ .|++||+| ..+|+++++.+||||++ ++.+++ ++.+
T Consensus 28 ~~~~vviD~ETTGl~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~-~~~~ 106 (224)
T 2f96_A 28 GYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAV-QEEA 106 (224)
T ss_dssp TEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCB-CHHH
T ss_pred CCcEEEEEeeCCCCCCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCC-CHHH
Confidence 34789999999999988778999999975 5764 38999999 67999999999999997 589998 9999
Q ss_pred HHHHHHHhhc--------CCCEEEEechhhHHHHHccc-----C---C----CccchHHHhhhhcCCCCccHHHHHHHHh
Q 017922 72 IQKRMKKLLS--------NGTILVGHSLNNDLEVLKLD-----H---P----RVIDTSLIFKYVDEYRRPSLYNLCKSVL 131 (364)
Q Consensus 72 V~~el~~fl~--------~~~iLVGHn~~fDl~fL~~~-----~---~----~vIDT~~L~r~~~~~~~~sL~~L~k~~L 131 (364)
|+.+|.+++. ++.+|||||+.||+.||+.. . | +++||..+++..+| .++|..|| +++
T Consensus 107 v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~--~~~L~~l~-~~~ 183 (224)
T 2f96_A 107 ALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG--QTVLAKAC-QAA 183 (224)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS--CCSHHHHH-HHT
T ss_pred HHHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC--CCCHHHHH-HHc
Confidence 9999999884 48999999999999999752 1 2 37999999998875 46999999 678
Q ss_pred CCccCCCCCCCChHHHHHHHHHHHHHHHHh
Q 017922 132 GYEIRKKGTPHNCLDDASAAMKLVLAIIER 161 (364)
Q Consensus 132 gi~i~~~~~~H~Al~DA~Ata~L~~~~le~ 161 (364)
|+++.. ..+|+|++||++|++||.+++++
T Consensus 184 gi~~~~-~~~H~Al~Da~~ta~l~~~l~~~ 212 (224)
T 2f96_A 184 GMEFDN-REAHSARYDTEKTAELFCGIVNR 212 (224)
T ss_dssp TCCCCT-TSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCC-CCCCChHHHHHHHHHHHHHHHHH
Confidence 998752 24899999999999999988764
No 9
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.95 E-value=2.3e-27 Score=228.85 Aligned_cols=159 Identities=18% Similarity=0.305 Sum_probs=135.2
Q ss_pred CcEEEEEEeccCCC----CCcccEEEEEEEEc---CCcEE--EEEEEcCCC--cccccccccCCCChhhhcCCCCCHHHH
Q 017922 4 NIMYAVDCEMVLCE----DGSEGLVRLCVVDR---NLKVT--IDELVKPEK--AVADYRSEITGLTADDLVGVTCSLAEI 72 (364)
Q Consensus 4 ~~~ValD~ETTGl~----~g~~~Ii~V~vVd~---~G~vi--~d~lVkP~~--~I~d~~t~itGIT~e~L~~ap~~~~eV 72 (364)
..||+|||||||++ +..++|++|++|.. +|+++ |++||+|.. +|+++++.+||||++||.++| +|.+|
T Consensus 78 ~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap-~~~ev 156 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRAD-TFPQV 156 (299)
T ss_dssp SEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSB-CHHHH
T ss_pred ceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCC-CHHHH
Confidence 57999999999996 34568999999875 35665 999999998 999999999999999999999 99999
Q ss_pred HHHHHHhhcCC------CEEEEechhhHHH-HHccc-------CC----CccchHHHhhhhcCCC--CccHHHHHHHHhC
Q 017922 73 QKRMKKLLSNG------TILVGHSLNNDLE-VLKLD-------HP----RVIDTSLIFKYVDEYR--RPSLYNLCKSVLG 132 (364)
Q Consensus 73 ~~el~~fl~~~------~iLVGHn~~fDl~-fL~~~-------~~----~vIDT~~L~r~~~~~~--~~sL~~L~k~~Lg 132 (364)
+.+|.+|+.+. .++||||+.||+. ||+.. .| .++||..+++..++.. +++|..|| .++|
T Consensus 157 l~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~-~~~g 235 (299)
T 1zbh_A 157 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLG 235 (299)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHH-HHTT
T ss_pred HHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHH-HHcC
Confidence 99999999443 4999999999999 99752 23 4799999988776533 48999999 6789
Q ss_pred CccCCCCCCCChHHHHHHHHHHHHHHHHhcccCC
Q 017922 133 YEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNA 166 (364)
Q Consensus 133 i~i~~~~~~H~Al~DA~Ata~L~~~~le~g~~~~ 166 (364)
++.. +.+|+|++||++|++||.++++.+....
T Consensus 236 i~~~--g~~H~Al~DA~ata~l~~~l~~~~~~~~ 267 (299)
T 1zbh_A 236 MDYD--GRPNCGLDDSKNIARIAVRMLQDGCELR 267 (299)
T ss_dssp CCCC--SCTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCC--CCCCChHHHHHHHHHHHHHHHHhCCcCC
Confidence 9876 2379999999999999999998765443
No 10
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=220.66 Aligned_cols=158 Identities=16% Similarity=0.230 Sum_probs=131.0
Q ss_pred CcEEEEEEeccCCCCCcc--cEEEEEEEEcC---CcEE--EEEEEcCCC--cccccccccCCCChhhhcCCCCCHHHHHH
Q 017922 4 NIMYAVDCEMVLCEDGSE--GLVRLCVVDRN---LKVT--IDELVKPEK--AVADYRSEITGLTADDLVGVTCSLAEIQK 74 (364)
Q Consensus 4 ~~~ValD~ETTGl~~g~~--~Ii~V~vVd~~---G~vi--~d~lVkP~~--~I~d~~t~itGIT~e~L~~ap~~~~eV~~ 74 (364)
..||+||+||||+++..+ +|++|++|..+ |+++ |++||+|.. +|+++++.+||||++||+++| +|.+|++
T Consensus 31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~-~~~~v~~ 109 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQP-SLQQVLE 109 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCC-CHHHHHH
T ss_pred CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCC-CHHHHHH
Confidence 469999999999997654 89999998652 4554 999999997 899999999999999999999 9999999
Q ss_pred HHHHhhcCCCEEEEech--------hhHHHH-Hcc-------cCC----Cccch---HHHhhhhcCCCCccHHHHHHHHh
Q 017922 75 RMKKLLSNGTILVGHSL--------NNDLEV-LKL-------DHP----RVIDT---SLIFKYVDEYRRPSLYNLCKSVL 131 (364)
Q Consensus 75 el~~fl~~~~iLVGHn~--------~fDl~f-L~~-------~~~----~vIDT---~~L~r~~~~~~~~sL~~L~k~~L 131 (364)
+|.+|+ ++.+|||||+ .||++| |+. ..| +++|+ ..+++... ++++|..|| +++
T Consensus 110 ~f~~~l-~~~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~--p~~~L~~l~-~~~ 185 (224)
T 2xri_A 110 RVDEWM-AKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCW--PKNGLLDMN-KGL 185 (224)
T ss_dssp HHHHHH-HHTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSC--CTTTHHHHH-HHT
T ss_pred HHHHHH-hhcccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccC--CCCCHHHHH-HHc
Confidence 999999 7889999999 999997 643 122 57894 44444433 458999999 688
Q ss_pred CCccCCCCCCCChHHHHHHHHHHHHHHHHhcccCCCC
Q 017922 132 GYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAVP 168 (364)
Q Consensus 132 gi~i~~~~~~H~Al~DA~Ata~L~~~~le~g~~~~i~ 168 (364)
|++.. +.+|+|++||++|++||.+++++|....+.
T Consensus 186 gi~~~--~~~H~Al~DA~~ta~l~~~l~~~g~~~~it 220 (224)
T 2xri_A 186 SLQHI--GRPHSGIDDCKNIANIMKTLAYRGFIFKQT 220 (224)
T ss_dssp TCCCC--SCTTCHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred CCCCC--CCCcChHHHHHHHHHHHHHHHHcCCEEeec
Confidence 99875 247999999999999999999887655543
No 11
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.94 E-value=4.4e-27 Score=209.32 Aligned_cols=146 Identities=16% Similarity=0.154 Sum_probs=117.9
Q ss_pred CCcEEEEEEeccCCCCCcccEEEEEEEEc--CCcEE---EEEEEcCCCcccccc-------cccCCCChhhhcCCCCCHH
Q 017922 3 SNIMYAVDCEMVLCEDGSEGLVRLCVVDR--NLKVT---IDELVKPEKAVADYR-------SEITGLTADDLVGVTCSLA 70 (364)
Q Consensus 3 ~~~~ValD~ETTGl~~g~~~Ii~V~vVd~--~G~vi---~d~lVkP~~~I~d~~-------t~itGIT~e~L~~ap~~~~ 70 (364)
..+||+|||||||+++..++|++|++|.. +|.++ |++||+|..+|++++ +.+||||++||.++| ++.
T Consensus 4 ~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~-~~~ 82 (180)
T 2igi_A 4 ENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTM-GDR 82 (180)
T ss_dssp GGCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCC-CHH
T ss_pred CCcEEEEEeeCCCCCCCCCceEEEEEEEEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCC-CHH
Confidence 34799999999999988788999999865 45454 899999999876654 667999999999999 999
Q ss_pred HHHHHHHHhhcC-----CCEEEEechhhHHHHHcccC--------CCccc--hH-HHhhhhcCCCCccHHHHHHHHhCCc
Q 017922 71 EIQKRMKKLLSN-----GTILVGHSLNNDLEVLKLDH--------PRVID--TS-LIFKYVDEYRRPSLYNLCKSVLGYE 134 (364)
Q Consensus 71 eV~~el~~fl~~-----~~iLVGHn~~fDl~fL~~~~--------~~vID--T~-~L~r~~~~~~~~sL~~L~k~~Lgi~ 134 (364)
+|+++|.+|+.+ ..+|||||+.||+.||+..+ .+++| |. .+++...|. + + .|++
T Consensus 83 ~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl~~l~~~~~p~----~---~---~~i~ 152 (180)
T 2igi_A 83 EAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPE----I---L---DGFT 152 (180)
T ss_dssp HHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHCGG----G---G---GGSC
T ss_pred HHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHHHHHHHHhChH----h---h---hCCC
Confidence 999999999943 37999999999999998743 34788 76 377766541 1 1 2554
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 017922 135 IRKKGTPHNCLDDASAAMKLVLAIIERR 162 (364)
Q Consensus 135 i~~~~~~H~Al~DA~Ata~L~~~~le~g 162 (364)
.. .+|+|++||++|++||.++++.-
T Consensus 153 ~~---~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 153 KQ---GTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp CC---CCCCHHHHHHHHHHHHHHHHHHT
T ss_pred Cc---CCcCcHHHHHHHHHHHHHHHHHh
Confidence 32 48999999999999999887653
No 12
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.94 E-value=1.3e-26 Score=214.99 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=134.3
Q ss_pred CCcEEEEEEeccCCCCCcccEEEEEEEEc----CCcE----EEEEEEcC--CCcccccccccCCCChh-hhcCCCCCHHH
Q 017922 3 SNIMYAVDCEMVLCEDGSEGLVRLCVVDR----NLKV----TIDELVKP--EKAVADYRSEITGLTAD-DLVGVTCSLAE 71 (364)
Q Consensus 3 ~~~~ValD~ETTGl~~g~~~Ii~V~vVd~----~G~v----i~d~lVkP--~~~I~d~~t~itGIT~e-~L~~ap~~~~e 71 (364)
...||+||+||||+++..++|++|++|.. +|.+ .|++||+| ..+|+++++.+||||++ ++.++| ++.+
T Consensus 36 ~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~-~~~~ 114 (235)
T 3v9w_A 36 GFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAV-SGYE 114 (235)
T ss_dssp TEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCB-CHHH
T ss_pred CCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCC-CHHH
Confidence 45799999999999988889999999964 5653 38899999 57999999999999999 999999 9999
Q ss_pred HHHHHHHhhc--------CCCEEEEechhhHHHHHccc-----C---C----CccchHHHhhhhcCCCCccHHHHHHHHh
Q 017922 72 IQKRMKKLLS--------NGTILVGHSLNNDLEVLKLD-----H---P----RVIDTSLIFKYVDEYRRPSLYNLCKSVL 131 (364)
Q Consensus 72 V~~el~~fl~--------~~~iLVGHn~~fDl~fL~~~-----~---~----~vIDT~~L~r~~~~~~~~sL~~L~k~~L 131 (364)
++.+|.+|+. ++.++||||+.||+.||+.. . | .++||..+++.++| .++|..|| .++
T Consensus 115 vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p--~~~L~~l~-~~~ 191 (235)
T 3v9w_A 115 ALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG--QTVLSKAC-QTA 191 (235)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS--CCSHHHHH-HHH
T ss_pred HHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC--CCCHHHHH-HHc
Confidence 9999999985 58999999999999999753 1 1 37999999998876 47999999 667
Q ss_pred CCccCCCCCCCChHHHHHHHHHHHHHHHHhcc
Q 017922 132 GYEIRKKGTPHNCLDDASAAMKLVLAIIERRV 163 (364)
Q Consensus 132 gi~i~~~~~~H~Al~DA~Ata~L~~~~le~g~ 163 (364)
|+++.. +.+|+|++||++|++||.+++++..
T Consensus 192 gi~~~~-~~~H~Al~DA~~ta~l~~~l~~~l~ 222 (235)
T 3v9w_A 192 GMDFDS-TQAHSALYDTERTAVLFCEIVNRWK 222 (235)
T ss_dssp TCCCCT-TTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC-CCCcChHHHHHHHHHHHHHHHHHHH
Confidence 998753 2489999999999999999886543
No 13
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.94 E-value=3.9e-27 Score=228.57 Aligned_cols=159 Identities=14% Similarity=0.242 Sum_probs=135.4
Q ss_pred CcEEEEEEeccCCCCCcc---cEEEEEEEEc---CCcE----EEEEEEcCCCc--ccccccccCCCChhhhcCCCCCHHH
Q 017922 4 NIMYAVDCEMVLCEDGSE---GLVRLCVVDR---NLKV----TIDELVKPEKA--VADYRSEITGLTADDLVGVTCSLAE 71 (364)
Q Consensus 4 ~~~ValD~ETTGl~~g~~---~Ii~V~vVd~---~G~v----i~d~lVkP~~~--I~d~~t~itGIT~e~L~~ap~~~~e 71 (364)
..||+||+||||+++..+ +|++|++|.. +|++ .|++||+|... |+++++.+||||++||.++| +|.+
T Consensus 19 ~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap-~~~e 97 (308)
T 3cg7_A 19 DTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTAD-TFDV 97 (308)
T ss_dssp SEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSC-BHHH
T ss_pred CeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCC-CHHH
Confidence 479999999999988755 8999998854 5665 38999999985 99999999999999999999 9999
Q ss_pred HHHHHHHhhcCCCEEEEech------hhHH-HHHccc-------CC----CccchHHHhhhhcC-CC------CccHHHH
Q 017922 72 IQKRMKKLLSNGTILVGHSL------NNDL-EVLKLD-------HP----RVIDTSLIFKYVDE-YR------RPSLYNL 126 (364)
Q Consensus 72 V~~el~~fl~~~~iLVGHn~------~fDl-~fL~~~-------~~----~vIDT~~L~r~~~~-~~------~~sL~~L 126 (364)
|+.+|.+|+ ++.++||||+ .||+ .||+.. .| +++||..+++..++ .. +++|..|
T Consensus 98 vl~~f~~~l-~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l 176 (308)
T 3cg7_A 98 VYEQFQQWL-ITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKM 176 (308)
T ss_dssp HHHHHHHHH-HHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHH
T ss_pred HHHHHHHHH-HhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHHH
Confidence 999999999 7888999999 9999 698642 23 37999999988765 21 6899999
Q ss_pred HHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHhcccCCC
Q 017922 127 CKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAV 167 (364)
Q Consensus 127 ~k~~Lgi~i~~~~~~H~Al~DA~Ata~L~~~~le~g~~~~i 167 (364)
+ .++|++... .+|+|++||++|++||.++++.+....+
T Consensus 177 ~-~~~gi~~~~--~~HrAl~DA~ata~l~~~l~~~~~~~~i 214 (308)
T 3cg7_A 177 N-EYYDLPTIG--RAHDAMDDCLNIATILQRMINMGAKVTV 214 (308)
T ss_dssp H-HHTTCCCCS--CTTCHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred H-HHcCCCCCC--CCcCHHHHHHHHHHHHHHHHHcCCCCCh
Confidence 9 888999863 3699999999999999999987754433
No 14
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.3e-26 Score=209.85 Aligned_cols=144 Identities=15% Similarity=0.230 Sum_probs=114.8
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEcCCc--EE---EEEEEcCCCcc----ccccccc---CCCChhhhcCCCCCH
Q 017922 2 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLK--VT---IDELVKPEKAV----ADYRSEI---TGLTADDLVGVTCSL 69 (364)
Q Consensus 2 ~~~~~ValD~ETTGl~~g~~~Ii~V~vVd~~G~--vi---~d~lVkP~~~I----~d~~t~i---tGIT~e~L~~ap~~~ 69 (364)
++.+||+|||||||+++..++|++|++|..+|. ++ |++||+|+.+| ++|.+.+ ||||++|+.++| ++
T Consensus 7 ~~~~~vviD~ETTGl~p~~d~IieIgav~~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p-~~ 85 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQV-TH 85 (194)
T ss_dssp -CCEEEEEEEEESCSCTTTCCEEEEEEEEEETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCC-CH
T ss_pred CCCCEEEEEeECCCCCCCCCccEEEEEEEEcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCC-CH
Confidence 456899999999999988889999999976555 33 78899999877 5556555 999999999999 99
Q ss_pred HHHHHHHHHhhcCCCE------EEEechhhHHHHHcccCC--------CccchHHHhhhhcCCCCccHHHHHHHHh----
Q 017922 70 AEIQKRMKKLLSNGTI------LVGHSLNNDLEVLKLDHP--------RVIDTSLIFKYVDEYRRPSLYNLCKSVL---- 131 (364)
Q Consensus 70 ~eV~~el~~fl~~~~i------LVGHn~~fDl~fL~~~~~--------~vIDT~~L~r~~~~~~~~sL~~L~k~~L---- 131 (364)
.+|+++|.+|+ ++.+ |||||+.||+.||+..++ +.+|+.. |..|+++++
T Consensus 86 ~ev~~~~~~~l-~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~~------------l~~l~~~~~p~~~ 152 (194)
T 2gbz_A 86 AQAEAQTVAFL-GEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVST------------IKELARRWAPAVA 152 (194)
T ss_dssp HHHHHHHHHHH-TTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHHH------------HHHHHHHHCGGGG
T ss_pred HHHHHHHHHHH-HHhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHHH------------HHHHHHHhCHHHH
Confidence 99999999999 7877 999999999999987543 3566553 333443332
Q ss_pred -CCccCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 017922 132 -GYEIRKKGTPHNCLDDASAAMKLVLAIIERR 162 (364)
Q Consensus 132 -gi~i~~~~~~H~Al~DA~Ata~L~~~~le~g 162 (364)
+++.. .+|+|++||++|++||.++.++.
T Consensus 153 ~~i~~~---~~H~Al~Da~ata~ll~~~~~~~ 181 (194)
T 2gbz_A 153 SGFAKS---SAHTALSDVRDSIDELRHYRQFM 181 (194)
T ss_dssp TTCCCC---SCCSHHHHHHHHHHHHHHHHTTS
T ss_pred hCCCCC---CCcccHHHHHHHHHHHHHHHHHh
Confidence 24332 48999999999999999887654
No 15
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=229.18 Aligned_cols=159 Identities=18% Similarity=0.315 Sum_probs=134.9
Q ss_pred CcEEEEEEeccCCC----CCcccEEEEEEEEc---CCcEE--EEEEEcCCC--cccccccccCCCChhhhcCCCCCHHHH
Q 017922 4 NIMYAVDCEMVLCE----DGSEGLVRLCVVDR---NLKVT--IDELVKPEK--AVADYRSEITGLTADDLVGVTCSLAEI 72 (364)
Q Consensus 4 ~~~ValD~ETTGl~----~g~~~Ii~V~vVd~---~G~vi--~d~lVkP~~--~I~d~~t~itGIT~e~L~~ap~~~~eV 72 (364)
..||+||+||||++ +..++|++|++|.. +|+++ |++||+|.. +|+++++.+||||++||.++| +|.+|
T Consensus 128 ~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap-~~~eV 206 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRAD-TFPQV 206 (349)
T ss_dssp SEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSE-EHHHH
T ss_pred CeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCC-CHHHH
Confidence 57899999999995 34568999999875 45665 899999998 999999999999999999999 99999
Q ss_pred HHHHHHhhcCC------CEEEEechhhHHH-HHccc-------CC----CccchHHHhhhhcCCC--CccHHHHHHHHhC
Q 017922 73 QKRMKKLLSNG------TILVGHSLNNDLE-VLKLD-------HP----RVIDTSLIFKYVDEYR--RPSLYNLCKSVLG 132 (364)
Q Consensus 73 ~~el~~fl~~~------~iLVGHn~~fDl~-fL~~~-------~~----~vIDT~~L~r~~~~~~--~~sL~~L~k~~Lg 132 (364)
+.+|.+|+.+. .++||||+.||+. ||+.. .| .++||..+++..++.. +++|..|| .+||
T Consensus 207 l~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~-~~~g 285 (349)
T 1zbu_A 207 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIML-EKLG 285 (349)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHH-HHTT
T ss_pred HHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHH-HHcC
Confidence 99999999443 5999999999999 99752 23 3799999988776533 48999999 7789
Q ss_pred CccCCCCCCCChHHHHHHHHHHHHHHHHhcccCC
Q 017922 133 YEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNA 166 (364)
Q Consensus 133 i~i~~~~~~H~Al~DA~Ata~L~~~~le~g~~~~ 166 (364)
++.. +.+|+|++||++|++||.++++.+....
T Consensus 286 i~~~--g~~HrAl~DA~ata~ll~~ll~~~~~~~ 317 (349)
T 1zbu_A 286 MDYD--GRPHCGLDDSKNIARIAVRMLQDGCELR 317 (349)
T ss_dssp CCCC--SCTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCC--CCCCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 9876 2379999999999999999998765443
No 16
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.93 E-value=4.6e-26 Score=206.66 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=118.3
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEcCC--cEE---EEEEEc-CCC---ccccc---ccccCCCChhhhcCCCCCH
Q 017922 2 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNL--KVT---IDELVK-PEK---AVADY---RSEITGLTADDLVGVTCSL 69 (364)
Q Consensus 2 ~~~~~ValD~ETTGl~~g~~~Ii~V~vVd~~G--~vi---~d~lVk-P~~---~I~d~---~t~itGIT~e~L~~ap~~~ 69 (364)
...+||+|||||||+++..++|++|++|..+| .++ ++.+|+ |.. .++++ +..+||||++|++++| ++
T Consensus 7 ~~~~~v~~D~ETTGL~p~~d~IiEIgaV~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p-~~ 85 (186)
T 3tr8_A 7 SDDNLIWLDLEMTGLDPERDRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSV-DE 85 (186)
T ss_dssp CTTCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCC-CH
T ss_pred CCCcEEEEEEECCCCCCCCCceEEEEEEEEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCC-CH
Confidence 34689999999999999888999999985555 433 445786 542 23444 4556799999999999 99
Q ss_pred HHHHHHHHHhhc-----CCCEEEEechhhHHHHHccc--------CCCccc--hHH-HhhhhcCCCCccHHHHHHHHhCC
Q 017922 70 AEIQKRMKKLLS-----NGTILVGHSLNNDLEVLKLD--------HPRVID--TSL-IFKYVDEYRRPSLYNLCKSVLGY 133 (364)
Q Consensus 70 ~eV~~el~~fl~-----~~~iLVGHn~~fDl~fL~~~--------~~~vID--T~~-L~r~~~~~~~~sL~~L~k~~Lgi 133 (364)
++|+++|++|+. ++++|||||+.||++||+.. +.++|| |.. |+|.++|. +. -|+
T Consensus 86 ~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~P~----~~------~~~ 155 (186)
T 3tr8_A 86 VEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWAPQ----IA------AAH 155 (186)
T ss_dssp HHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCHH----HH------TTS
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHCcc----cc------ccC
Confidence 999999999995 68999999999999999874 346899 887 99998761 11 155
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHHHHhcc
Q 017922 134 EIRKKGTPHNCLDDASAAMKLVLAIIERRV 163 (364)
Q Consensus 134 ~i~~~~~~H~Al~DA~Ata~L~~~~le~g~ 163 (364)
+.. .+|+|++||++|.+++.++.+.-+
T Consensus 156 ~~~---~~HrAl~Da~ati~~l~~y~~~~~ 182 (186)
T 3tr8_A 156 IKE---SQHLALQDIRDSIEELRYYRAHLL 182 (186)
T ss_dssp CCC---CCSCHHHHHHHHHHHHHHHHHHTB
T ss_pred CCC---CCcChHHHHHHHHHHHHHHHHHhh
Confidence 543 489999999999999999987654
No 17
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.92 E-value=2.6e-25 Score=227.82 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=129.6
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEc--CCcEE---EEEEEcCCCcc--cccccccCCCChhhhcCCCCCHHHHHH
Q 017922 2 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDR--NLKVT---IDELVKPEKAV--ADYRSEITGLTADDLVGVTCSLAEIQK 74 (364)
Q Consensus 2 ~~~~~ValD~ETTGl~~g~~~Ii~V~vVd~--~G~vi---~d~lVkP~~~I--~d~~t~itGIT~e~L~~ap~~~~eV~~ 74 (364)
....||+||+||||+++..++|++|++|.. +|.++ |++||+|..+| ++..+.+||||++||.++|.++.+|+.
T Consensus 7 ~~~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl~ 86 (482)
T 2qxf_A 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAA 86 (482)
T ss_dssp CCCEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHHH
Confidence 345899999999999988889999999875 56665 99999999988 567889999999999998856699999
Q ss_pred HHHHhhc-CCCEEEEec-hhhHHHHHccc--------C-------CCccchHHHhhhhc--------------CCCCccH
Q 017922 75 RMKKLLS-NGTILVGHS-LNNDLEVLKLD--------H-------PRVIDTSLIFKYVD--------------EYRRPSL 123 (364)
Q Consensus 75 el~~fl~-~~~iLVGHn-~~fDl~fL~~~--------~-------~~vIDT~~L~r~~~--------------~~~~~sL 123 (364)
+|.+|++ +++++|||| +.||+.||+.. . ...+||..+++..+ +..+++|
T Consensus 87 ~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL 166 (482)
T 2qxf_A 87 RIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRL 166 (482)
T ss_dssp HHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCH
T ss_pred HHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCH
Confidence 9999994 399999999 99999999752 1 22578988877653 1347899
Q ss_pred HHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHh
Q 017922 124 YNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIER 161 (364)
Q Consensus 124 ~~L~k~~Lgi~i~~~~~~H~Al~DA~Ata~L~~~~le~ 161 (364)
..|| .++|++.. .+|+|++||++|++||.++.+.
T Consensus 167 ~~L~-~~~Gi~~~---~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 167 EHLT-KANGIEHS---NAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp HHHH-HHTTCCCC------CTTHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHcCCCCC---CCCCHHHHHHHHHHHHHHHHHh
Confidence 9999 77899875 3799999999999999987765
No 18
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.12 E-value=8e-10 Score=115.87 Aligned_cols=142 Identities=20% Similarity=0.145 Sum_probs=104.7
Q ss_pred CcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhcCCCCCHHHHHHHHHHhhcCC
Q 017922 4 NIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNG 83 (364)
Q Consensus 4 ~~~ValD~ETTGl~~g~~~Ii~V~vVd~~G~vi~d~lVkP~~~I~d~~t~itGIT~e~L~~ap~~~~eV~~el~~fl~~~ 83 (364)
..+|+||+||||+++-..+|+.|+++..+|+.. ||.+.. .+++ +.+++ ++.++++.|.+|+ .+
T Consensus 26 ~~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~---yip~~~---------~~~~---~~~~l-~~~~vl~~L~~~L-~d 88 (605)
T 2kfn_A 26 APVFAFDTETDSLDNISANLVGLSFAIEPGVAA---YIPVAH---------DYLD---APDQI-SRERALELLKPLL-ED 88 (605)
T ss_dssp SSSEEEEEEESCSCTTTCCEEEEEEEEETTEEE---EEECCC---------CSTT---CCCCC-CHHHHHHHHHHHH-TC
T ss_pred CCeEEEEEecCCCCcccCceEEEEEEEcCCcEE---EEeccc---------cccc---ccccc-CHHHHHHHHHHHH-cC
Confidence 367999999999987566799998885566543 442211 0111 12344 7899999999999 55
Q ss_pred C--EEEEechhhHHHHHccc---CCC-ccchHHHhhhhcC-CCCccHHHHHHHHhCCccC-------CCCC---------
Q 017922 84 T--ILVGHSLNNDLEVLKLD---HPR-VIDTSLIFKYVDE-YRRPSLYNLCKSVLGYEIR-------KKGT--------- 140 (364)
Q Consensus 84 ~--iLVGHn~~fDl~fL~~~---~~~-vIDT~~L~r~~~~-~~~~sL~~L~k~~Lgi~i~-------~~~~--------- 140 (364)
. ++||||+.||+.+|... .+. ++||..+++.+.| ..+++|+.||++|||+... .+..
T Consensus 89 ~~i~kV~hnak~D~~~L~~~Gi~l~~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~l 168 (605)
T 2kfn_A 89 EKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIAL 168 (605)
T ss_dssp TTSCEEESSHHHHHHHHHTTTCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCH
T ss_pred CCCeEEEECcHHHHHHHHHCCCCCCCccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccCCH
Confidence 4 89999999999999753 233 7999999999888 5689999999888787631 1100
Q ss_pred ---CCChHHHHHHHHHHHHHHHHhc
Q 017922 141 ---PHNCLDDASAAMKLVLAIIERR 162 (364)
Q Consensus 141 ---~H~Al~DA~Ata~L~~~~le~g 162 (364)
.|.|..||.+++.||..+....
T Consensus 169 e~~~~yAa~Da~~~~~L~~~L~~~L 193 (605)
T 2kfn_A 169 EEAGRYAAEDADVTLQLHLKMWPDL 193 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1458899999999998876544
No 19
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=99.01 E-value=2.6e-09 Score=97.06 Aligned_cols=145 Identities=16% Similarity=0.062 Sum_probs=92.0
Q ss_pred EEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEc---CCCccccccc-c-cCCCChhhhcCCCCCHHHHHHHHHHhh
Q 017922 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVK---PEKAVADYRS-E-ITGLTADDLVGVTCSLAEIQKRMKKLL 80 (364)
Q Consensus 6 ~ValD~ETTGl~~g~~~Ii~V~vVd~~G~vi~d~lVk---P~~~I~d~~t-~-itGIT~e~L~~ap~~~~eV~~el~~fl 80 (364)
-+.+|||+|+... +.+||+|++|..+|... +..+. |.. +.++.. . +.++...-..... ++.+++.+|.+|+
T Consensus 24 r~FlDTEFt~d~~-~~eLISIGlV~EdGrEF-Yav~~d~d~~~-~~~wVr~~Vlp~L~~~~~~~~~-s~~~i~~~L~~FL 99 (190)
T 4hec_A 24 RYFYDTEFIEDGH-TIELISIGVVAEDGREY-YAVSTEFDPER-AGSWVRTHVLPKLPPPASQLWR-SRQQIRLDLEEFL 99 (190)
T ss_dssp EEEEEEEEEECSS-CEEEEEEEEEETTSCEE-EEEETTSCGGG-CCHHHHHHTGGGSCCTTSTTEE-CHHHHHHHHHHHT
T ss_pred EEEEeeeecCCCC-CCCEEEEEEEcCCCCEE-EEEecCCChhh-CcHHHHhccccCCCCCcccccC-CHHHHHHHHHHHH
Confidence 5889999998433 34799999999999864 44433 332 333332 2 3555543333334 8999999999999
Q ss_pred cCC----CEEEEechhhHHHHHcccCCCccchHHHhhhhcCCCCccHHHHHHHHhCCccCC--CCCCCChHHHHHHHHHH
Q 017922 81 SNG----TILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRK--KGTPHNCLDDASAAMKL 154 (364)
Q Consensus 81 ~~~----~iLVGHn~~fDl~fL~~~~~~vIDT~~L~r~~~~~~~~sL~~L~k~~Lgi~i~~--~~~~H~Al~DA~Ata~L 154 (364)
... ..|+||+..||..+|........+. . ...+.....|..++ ..+|.+--. .+.+|+||.||++.+..
T Consensus 100 ~~~~~~~~eLwa~~~~yD~~~L~ql~g~m~~l---P-~~~p~~~~dlr~~~-~~~g~~~lp~~~~~~H~AL~DAR~n~~~ 174 (190)
T 4hec_A 100 RIDGTDSIELWAWVGAYDHVALCQLWGPMTAL---P-PTVPRFTRELRQLW-EDRGCPRMPPRPRDVHDALVDARDQLRR 174 (190)
T ss_dssp TTTSSCEEEEEESSCHHHHHHHHTTTSSGGGS---C-TTSCSSCEEHHHHH-HHTTCCCCCC-----CCHHHHHHHHHHH
T ss_pred HhcCCCCCEEEEecccccHHHHHHHhcccccC---C-cccchhhHHHHHHH-HHcCCCCCCCCCCCCcCcHHHHHHHHHH
Confidence 422 2599999999999997644322211 0 00112344677777 555544211 24579999999999999
Q ss_pred HHHHH
Q 017922 155 VLAII 159 (364)
Q Consensus 155 ~~~~l 159 (364)
|..+.
T Consensus 175 ~~~~~ 179 (190)
T 4hec_A 175 FRLIT 179 (190)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98654
No 20
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.97 E-value=5.1e-10 Score=119.22 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=99.6
Q ss_pred EEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhcCCCCCHHHHHHHHHHhhcCCCE
Q 017922 6 MYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSNGTI 85 (364)
Q Consensus 6 ~ValD~ETTGl~~g~~~Ii~V~vVd~~G~vi~d~lVkP~~~I~d~~t~itGIT~e~L~~ap~~~~eV~~el~~fl~~~~i 85 (364)
+||||+||||+++..+.|+.|.+++..+...+ ++.|. .+.++++.|.+|+.++.+
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~--~~~p~-----------------------~i~~~l~~L~~~l~~~~~ 55 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYV--SYRPS-----------------------DFGAYLDALEAEVARGGL 55 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEE--EECGG-----------------------GHHHHHHHHHHHHHTTCC
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEEecCCCcEE--EEChH-----------------------HHHHHHHHHHHHHhcCCe
Confidence 58999999999987778999999886433222 22222 234566778888855678
Q ss_pred EEEech-hhHHHHHccc----------CC--CccchHHHhhhhcC-CCCccHHHHHHHHh-------CCcc-----C---
Q 017922 86 LVGHSL-NNDLEVLKLD----------HP--RVIDTSLIFKYVDE-YRRPSLYNLCKSVL-------GYEI-----R--- 136 (364)
Q Consensus 86 LVGHn~-~fDl~fL~~~----------~~--~vIDT~~L~r~~~~-~~~~sL~~L~k~~L-------gi~i-----~--- 136 (364)
+||||+ .||+.+|... .+ .++||..+++.+.+ ..+++|+.||++|| |... .
T Consensus 56 kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~ 135 (698)
T 1x9m_A 56 IVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKD 135 (698)
T ss_dssp EEESSTTTTHHHHHHHHHHHHHCCCCCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHH
T ss_pred EEEcCChHHHHHHHHHhhhhcccCCccCCCCcchhHHHHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHHH
Confidence 999999 9999999643 33 47999999999988 66899999998776 4221 0
Q ss_pred --------CCCC--------------CCChHHHHHHHHHHHHHHHHhcccCCC
Q 017922 137 --------KKGT--------------PHNCLDDASAAMKLVLAIIERRVDNAV 167 (364)
Q Consensus 137 --------~~~~--------------~H~Al~DA~Ata~L~~~~le~g~~~~i 167 (364)
.+.. .|.|..||.+++.||..+.....+.+.
T Consensus 136 ~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~ 188 (698)
T 1x9m_A 136 DFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHYFPP 188 (698)
T ss_dssp HHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTTTSCT
T ss_pred HhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1100 367899999999999988775544443
No 21
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.41 E-value=3.3e-07 Score=95.06 Aligned_cols=120 Identities=15% Similarity=0.028 Sum_probs=93.1
Q ss_pred CCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhcCCCCCHHHHHHHHHHhhcC
Q 017922 3 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSN 82 (364)
Q Consensus 3 ~~~~ValD~ETTGl~~g~~~Ii~V~vVd~~G~vi~d~lVkP~~~I~d~~t~itGIT~e~L~~ap~~~~eV~~el~~fl~~ 82 (364)
+.+.+++|+|+.+.++-...++.|++-. .|+ .| +| . ++...|.+|+ +
T Consensus 9 ~p~~valDtE~~~~~~~~a~Lvgi~la~-~~~-a~--~i----------------~------------~~l~~l~~~l-~ 55 (540)
T 4dfk_A 9 PPEGAFVGFVLSRKEPMWADLLALAAAR-GGR-VH--RA----------------P------------EPYKALRDLK-E 55 (540)
T ss_dssp CCTTCEEEEEESSSCTTTCCEEEEEEEE-TTE-EE--EC----------------S------------SHHHHHTTCS-S
T ss_pred CCCceEEEEEecCCccCcccEEEEEEEc-CCE-EE--Ee----------------h------------hhHHHHHHHH-c
Confidence 4467999999999987766788777763 444 23 11 0 2567889999 6
Q ss_pred CCEEEEechhhHHHHHcccCCCccchHHHhhhhcCCCCccHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 017922 83 GTILVGHSLNNDLEVLKLDHPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERR 162 (364)
Q Consensus 83 ~~iLVGHn~~fDl~fL~~~~~~vIDT~~L~r~~~~~~~~sL~~L~k~~Lgi~i~~~~~~H~Al~DA~Ata~L~~~~le~g 162 (364)
+..+||||+.||+.-..+..+.++||...+..+.|. +|+|++||++|++. + .|+|..||.+++.||..+.+..
T Consensus 56 d~~kV~hn~K~Dl~~~Gi~~~~~fDT~laAyLL~p~-~~~L~~La~~yl~~-~-----gk~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 56 ARGLLAKDLSVLALREGLGLPPGDDPMLLAYLLDPS-NTTPEGVARRYGGE-W-----TEEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp BCSTTHHHHHHHHHHTTCCCCBCCCHHHHHHHHCTT-CCCHHHHHHHHTSC-C-----CSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEeccHHHHHHcCCCCCcceeHHHHHHHhCCC-CCCHHHHHHHHhhh-h-----ccchHHHHHHHHHHHHHHHHHH
Confidence 688999999999992223333578999999999888 99999999999876 3 3789999999999998877654
No 22
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.30 E-value=5.9e-06 Score=79.27 Aligned_cols=160 Identities=13% Similarity=0.108 Sum_probs=109.0
Q ss_pred CcEEEEEEeccCCCCC---c-----c-------------cEEEEEEE--EcCCcE-----E--EEEEEcCCCcccc-ccc
Q 017922 4 NIMYAVDCEMVLCEDG---S-----E-------------GLVRLCVV--DRNLKV-----T--IDELVKPEKAVAD-YRS 52 (364)
Q Consensus 4 ~~~ValD~ETTGl~~g---~-----~-------------~Ii~V~vV--d~~G~v-----i--~d~lVkP~~~I~d-~~t 52 (364)
-+|||+|+|++|+-.. . + .|+++++. +.+|+. . |+-++.|...+-. ...
T Consensus 34 ~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g~~p~~~~~wqFNF~f~~~~d~~~~~SI 113 (285)
T 4gmj_B 34 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSI 113 (285)
T ss_dssp CCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHHH
T ss_pred CCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCCCcCCCeeEEEEEEEeccccccccHHHH
Confidence 4799999999997321 0 0 37887665 555542 2 4445566543311 111
Q ss_pred ---ccCCCChhhhcCCCCCHHHHHHHHHH---hhcCCCEEEEechhhHHHHHcc--------------------cCCCcc
Q 017922 53 ---EITGLTADDLVGVTCSLAEIQKRMKK---LLSNGTILVGHSLNNDLEVLKL--------------------DHPRVI 106 (364)
Q Consensus 53 ---~itGIT~e~L~~ap~~~~eV~~el~~---fl~~~~iLVGHn~~fDl~fL~~--------------------~~~~vI 106 (364)
.-+||.-......+++..+..+.|.. .+..+..+|.|+-.+|+.+|-. .+|.++
T Consensus 114 ~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vY 193 (285)
T 4gmj_B 114 ELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIY 193 (285)
T ss_dssp HHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEE
T ss_pred HHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhh
Confidence 12777777777666666665555543 3346778888888899998843 246789
Q ss_pred chHHHhhhhcCCCCccHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHhcccCCC
Q 017922 107 DTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAV 167 (364)
Q Consensus 107 DT~~L~r~~~~~~~~sL~~L~k~~Lgi~i~~~~~~H~Al~DA~Ata~L~~~~le~g~~~~i 167 (364)
||-.|.+.... .+.+|..|| +.||++-- +..|.|-.|+..|+.+|.++.+.-++..+
T Consensus 194 D~K~l~~~~~~-l~ggL~~lA-~~L~v~r~--g~~HqAGsDSllT~~~F~kl~~~~f~~~~ 250 (285)
T 4gmj_B 194 DVKYLMKSCKN-LKGGLQEVA-EQLELERI--GPQHQAGSDSLLTGMAFFKMREMFFEDHI 250 (285)
T ss_dssp EHHHHGGGSTT-CCSCHHHHH-HHTTCCCC--SCTTSHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHhccc-cCChHHHHH-HhCCCCCC--CCCCcchhHHHHHHHHHHHHHHHHhcCCc
Confidence 99999887654 345899999 77888753 45899999999999999998876655444
No 23
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=98.15 E-value=8.6e-06 Score=82.22 Aligned_cols=132 Identities=15% Similarity=0.048 Sum_probs=87.7
Q ss_pred CCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhcCCCCCHHHHHHHHHHhhc-
Q 017922 3 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLS- 81 (364)
Q Consensus 3 ~~~~ValD~ETTGl~~g~~~Ii~V~vVd~~G~vi~d~lVkP~~~I~d~~t~itGIT~e~L~~ap~~~~eV~~el~~fl~- 81 (364)
...+|+||+|+++.......++-|.+-..++. .+|.|-.. + . ....|..++.
T Consensus 128 ~~~~vavDtE~~~~~~~~~~l~lIQLa~~~~~----~lidpl~l---------~---~-----------~l~~L~~lL~d 180 (428)
T 3saf_A 128 NCQEFAVNLEHHSYRSFLGLTCLMQISTRTED----FIIDTLEL---------R---S-----------DMYILNESLTD 180 (428)
T ss_dssp TCSEEEEEEEEECTTCSSCEEEEEEEECSSCE----EEEETTTT---------G---G-----------GGGGGHHHHTC
T ss_pred cCCeEEEEEEecCCCCCCCeEEEEEEEeCCcE----EEEEeccc---------h---h-----------hHHHHHHHHcC
Confidence 45789999999987755545555554443332 34444321 0 0 1123445553
Q ss_pred CCCEEEEechhhHHHHHcc----cCCCccchHHHhhhhcCCCCccHHHHHHHHhCCccCCCCCC-------------CCh
Q 017922 82 NGTILVGHSLNNDLEVLKL----DHPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTP-------------HNC 144 (364)
Q Consensus 82 ~~~iLVGHn~~fDl~fL~~----~~~~vIDT~~L~r~~~~~~~~sL~~L~k~~Lgi~i~~~~~~-------------H~A 144 (364)
.+-+-||||+.+|+.+|.. ....++||...+..+.+ ..++|+.|++++||+.+..+... +-|
T Consensus 181 p~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~-~~~gL~~Lv~~~Lg~~l~K~~~~sdW~~rpLs~~q~~YA 259 (428)
T 3saf_A 181 PAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL-GRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYA 259 (428)
T ss_dssp TTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTC-SCCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHHHH
T ss_pred CCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCC-CCCCHHHHHHHHcCCCCCccccccccccCCCCHHHHHHH
Confidence 3456799999999999953 22347899987777654 35899999999999987653111 336
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 017922 145 LDDASAAMKLVLAIIERR 162 (364)
Q Consensus 145 l~DA~Ata~L~~~~le~g 162 (364)
..||.++..||..+....
T Consensus 260 A~DA~~ll~L~~~L~~~L 277 (428)
T 3saf_A 260 RDDTHYLLYIYDKMRLEM 277 (428)
T ss_dssp HHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 789999999998776543
No 24
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=98.13 E-value=5.5e-06 Score=89.22 Aligned_cols=141 Identities=18% Similarity=0.191 Sum_probs=98.1
Q ss_pred CCcEEEEEEeccC---CCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhcCCCCCHHHHHHHHHHh
Q 017922 3 SNIMYAVDCEMVL---CEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKL 79 (364)
Q Consensus 3 ~~~~ValD~ETTG---l~~g~~~Ii~V~vVd~~G~vi~d~lVkP~~~I~d~~t~itGIT~e~L~~ap~~~~eV~~el~~f 79 (364)
+-++++||+||+| .++..+.|+.|++++.++..++. + + +|....+...+ +-.+++..|.++
T Consensus 134 ~l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~~t-~-~-------------~i~~~~v~~~~-~E~~LL~~f~~~ 197 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVIT-W-K-------------KIDLPYVDVVS-TEKEMIKRFLRV 197 (775)
T ss_dssp CCCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEEEE-S-S-------------CCCCSSEEECS-CHHHHHHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCeeEe-e-c-------------cccccceEEcC-CHHHHHHHHHHH
Confidence 4578999999998 44556789999988776553321 0 1 12222355566 788889999888
Q ss_pred hcC--CCEEEEech-hhHHHHHccc-------C-----------------------CC-ccchHHHhhhhcCCCCccHHH
Q 017922 80 LSN--GTILVGHSL-NNDLEVLKLD-------H-----------------------PR-VIDTSLIFKYVDEYRRPSLYN 125 (364)
Q Consensus 80 l~~--~~iLVGHn~-~fDl~fL~~~-------~-----------------------~~-vIDT~~L~r~~~~~~~~sL~~ 125 (364)
+.. -.+|||||. .||+.+|... . .+ .+|+..+++......+|+|+.
T Consensus 198 i~~~dPDiivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~l~sysL~~ 277 (775)
T 1qht_A 198 VREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEA 277 (775)
T ss_dssp HHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSCCSCCCHHH
T ss_pred HHhcCCCEEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcCcCcCCHHH
Confidence 853 349999997 5999988531 0 12 479988888866678899999
Q ss_pred HHHHHhCCccCC-----------CCC-----CCChHHHHHHHHHHHHHHH
Q 017922 126 LCKSVLGYEIRK-----------KGT-----PHNCLDDASAAMKLVLAII 159 (364)
Q Consensus 126 L~k~~Lgi~i~~-----------~~~-----~H~Al~DA~Ata~L~~~~l 159 (364)
+|+.+||..-.. ++. ..-++.||..+..|+..++
T Consensus 278 Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 278 VYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp HHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 998899985331 000 1224689999999986554
No 25
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=98.01 E-value=1.6e-05 Score=81.82 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=94.7
Q ss_pred cCCCEEEEechhhHHHHHcc-------------------cCCCccchHHHhhhh--cC-CCCccHHHHHHHHhCC-----
Q 017922 81 SNGTILVGHSLNNDLEVLKL-------------------DHPRVIDTSLIFKYV--DE-YRRPSLYNLCKSVLGY----- 133 (364)
Q Consensus 81 ~~~~iLVGHn~~fDl~fL~~-------------------~~~~vIDT~~L~r~~--~~-~~~~sL~~L~k~~Lgi----- 133 (364)
..+.+|||||.-.|+.+|-. .+|.++||-.|+... .. ....+|..|. +.|..
T Consensus 274 ~~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~l~-~~l~~~~~~~ 352 (507)
T 3d45_A 274 NSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELE-KRLKETPFDP 352 (507)
T ss_dssp HHCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHH-HHTTSTTCCC
T ss_pred hCCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHHHH-HHHhccCCCC
Confidence 46899999999999998853 257799999988752 11 4577899999 66652
Q ss_pred cc-----------CCCCCCCChHHHHHHHHHHHHHHHHhccc-----CCCCCcccchhHHHHHh----------------
Q 017922 134 EI-----------RKKGTPHNCLDDASAAMKLVLAIIERRVD-----NAVPLLQEDVAETERAR---------------- 181 (364)
Q Consensus 134 ~i-----------~~~~~~H~Al~DA~Ata~L~~~~le~g~~-----~~i~~~~~~~~e~~~~~---------------- 181 (364)
+- ...+..|.|-.||.+|+.+|.++...-.. ...........+...++
T Consensus 353 p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~~~~~~~~~~~~~~~~~l~~~~N~l~l~~~~d~~~i~l~g 432 (507)
T 3d45_A 353 PKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSLLSPPKMCVSARSKLIEPFFNKLFLMRVMDIPYLNLEG 432 (507)
T ss_dssp CCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHCC---------CCSCSSSGGGTTEECCCSBSSCCSEESSS
T ss_pred CeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhHHHhhheeeeeeccCCCceeeCCC
Confidence 10 00134799999999999999987643221 00000000011111222
Q ss_pred ---------hhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhc
Q 017922 182 ---------LFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVK 239 (364)
Q Consensus 182 ---------l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~ 239 (364)
.+..+.|+.|+..+|.++|..-..+.+.... -.+|+|.|++++.|+.+...+.
T Consensus 433 ~d~~~~R~~vl~v~f~~~~~~~~i~~~fs~fg~v~V~wid-----dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 433 PDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CCCCCCGGGEEEEECCTTCCHHHHHHHGGGGCCCEEEECS-----SSEEEEECSCHHHHHHHHHHHT
T ss_pred CCCCCCcCcEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEc-----CCeEEEEECCHHHHHHHHHHHH
Confidence 2222346666666666666443233333222 2689999999999999888775
No 26
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=97.94 E-value=0.00013 Score=68.75 Aligned_cols=160 Identities=13% Similarity=0.103 Sum_probs=108.2
Q ss_pred CcEEEEEEeccCCCCC---c------------------ccEEEEEEE--EcCCcE-----EE--EEEEcCCCcc-ccccc
Q 017922 4 NIMYAVDCEMVLCEDG---S------------------EGLVRLCVV--DRNLKV-----TI--DELVKPEKAV-ADYRS 52 (364)
Q Consensus 4 ~~~ValD~ETTGl~~g---~------------------~~Ii~V~vV--d~~G~v-----i~--d~lVkP~~~I-~d~~t 52 (364)
-+|||+|+|++|+... . -.|+++++. +.+|+. .| +-+.+....+ .....
T Consensus 24 ~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p~~~~~wqFNF~F~~~~d~~~~~Si 103 (252)
T 2d5r_A 24 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSI 103 (252)
T ss_dssp CCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHHH
T ss_pred CCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCCCCCCceeEEEEEEECCcccccCHHHH
Confidence 4799999999998421 1 147776654 556652 22 2233332211 00011
Q ss_pred ---ccCCCChhhhcCCCCCHHHHHHHHHH---hhcCCCEEEEechhhHHHHHcc--------------------cCCCcc
Q 017922 53 ---EITGLTADDLVGVTCSLAEIQKRMKK---LLSNGTILVGHSLNNDLEVLKL--------------------DHPRVI 106 (364)
Q Consensus 53 ---~itGIT~e~L~~ap~~~~eV~~el~~---fl~~~~iLVGHn~~fDl~fL~~--------------------~~~~vI 106 (364)
.-+||.-+.....+++..+..+.+.. .++++-.+|.|+-.+|+.+|=. .+|.++
T Consensus 104 ~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP~iy 183 (252)
T 2d5r_A 104 ELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIY 183 (252)
T ss_dssp HHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEE
T ss_pred HHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchh
Confidence 23688777777777677766665554 3335568999999999998732 246689
Q ss_pred chHHHhhhhcCCCCccHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHhcccCCC
Q 017922 107 DTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDNAV 167 (364)
Q Consensus 107 DT~~L~r~~~~~~~~sL~~L~k~~Lgi~i~~~~~~H~Al~DA~Ata~L~~~~le~g~~~~i 167 (364)
||-.|++.... ...+|..|+ +.||.+-- |..|.|-.||..|+.+|.++.+...+..+
T Consensus 184 D~K~l~~~~~~-l~~gL~~la-~~L~v~r~--g~~HqAGsDsllT~~~F~km~~~~f~~~~ 240 (252)
T 2d5r_A 184 DVKYLMKSCKN-LKGGLQEVA-EQLELERI--GPQHQAGSDSLLTGMAFFKMREMFFEDHI 240 (252)
T ss_dssp EHHHHGGGCTT-CCSSHHHHH-HHHTCCCC--SSTTSHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred hHHHHHHHhcc-cCCCHHHHH-HHcCCCcc--CcccchhhhHHHHHHHHHHHHHHhcCCCC
Confidence 99999988754 356799999 77887753 46899999999999999998877665443
No 27
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=97.91 E-value=0.00014 Score=72.05 Aligned_cols=151 Identities=9% Similarity=-0.007 Sum_probs=96.2
Q ss_pred CCcEEEEEEeccC--CC-CC--cccEEEEEEEEcCCcEE-EEEEEcCC-Cccccccc---------ccCCCChh---h--
Q 017922 3 SNIMYAVDCEMVL--CE-DG--SEGLVRLCVVDRNLKVT-IDELVKPE-KAVADYRS---------EITGLTAD---D-- 61 (364)
Q Consensus 3 ~~~~ValD~ETTG--l~-~g--~~~Ii~V~vVd~~G~vi-~d~lVkP~-~~I~d~~t---------~itGIT~e---~-- 61 (364)
+-.+++||+||++ .. +. .+.|+.|++++..+... .-.+++++ ....++.. .+..-.+. .
T Consensus 105 ~l~vlsfDIEt~~~~fP~~~~~~d~Ii~Is~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~ 184 (388)
T 1noy_A 105 FVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYVFDLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEILDRVI 184 (388)
T ss_dssp GCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHHHTTEE
T ss_pred CeEEEEEEEEeCCCCCCCCCCCCCeEEEEEEEEecCCeEEEEEEeeccCCCCCccccccccccccccccccccccCCCeE
Confidence 3578999999998 21 11 34799999998755432 11345542 21111110 11111111 1
Q ss_pred hcCCCCCHHHHHHHHHHhhc--CCCEEEEech-hhHHHHHcc---c------------CC--------------------
Q 017922 62 LVGVTCSLAEIQKRMKKLLS--NGTILVGHSL-NNDLEVLKL---D------------HP-------------------- 103 (364)
Q Consensus 62 L~~ap~~~~eV~~el~~fl~--~~~iLVGHn~-~fDl~fL~~---~------------~~-------------------- 103 (364)
+...+ +-.+++..|.+++. .-.++||||+ .||+.+|.. . ..
T Consensus 185 v~~~~-~E~~LL~~f~~~i~~~dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i~ 263 (388)
T 1noy_A 185 YMPFD-NERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSID 263 (388)
T ss_dssp EEEES-CHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEET
T ss_pred EEEcC-CHHHHHHHHHHHHHHhCCcEEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEEc
Confidence 12344 67789999999883 3479999998 689987632 0 01
Q ss_pred -C-ccchHHHhhhh-cC-CCCccHHHHHHHHhCCccCCCCCCC-C----------------hHHHHHHHHHHHHHH
Q 017922 104 -R-VIDTSLIFKYV-DE-YRRPSLYNLCKSVLGYEIRKKGTPH-N----------------CLDDASAAMKLVLAI 158 (364)
Q Consensus 104 -~-vIDT~~L~r~~-~~-~~~~sL~~L~k~~Lgi~i~~~~~~H-~----------------Al~DA~Ata~L~~~~ 158 (364)
+ ++|+..+++.. +. ..+|+|+.+|+.+||..-.. | . ++.||..+++||.++
T Consensus 264 GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~d----~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 264 GVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLP----YDGPINKLRETNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp TSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCC----CSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCCC----cHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 58888888884 54 78999999998899875321 2 2 578999999999863
No 28
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=97.83 E-value=0.00018 Score=64.59 Aligned_cols=89 Identities=21% Similarity=0.156 Sum_probs=62.1
Q ss_pred HHHHHhhcC-CCEEEEechhhHHHHHccc----CCCccchHHHhhhh-cCCCCccHHHHHHHHhCCccCCC---------
Q 017922 74 KRMKKLLSN-GTILVGHSLNNDLEVLKLD----HPRVIDTSLIFKYV-DEYRRPSLYNLCKSVLGYEIRKK--------- 138 (364)
Q Consensus 74 ~el~~fl~~-~~iLVGHn~~fDl~fL~~~----~~~vIDT~~L~r~~-~~~~~~sL~~L~k~~Lgi~i~~~--------- 138 (364)
+.|.+++.. +.+.||||+.+|+.+|... ...++|...|+..+ .+..+++|..|++++||..+..+
T Consensus 86 ~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~~K~k~~~~s~W~ 165 (208)
T 2e6m_A 86 QGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWS 165 (208)
T ss_dssp HHHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCCHHHHTSCTT
T ss_pred HHHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccCCCChhHHHHHHHHcCCCcCCCCCeeeCCCC
Confidence 346677733 3578999999999999752 23489955566555 44578999999999988776321
Q ss_pred C------CCCChHHHHHHHHHHHHHHHHhc
Q 017922 139 G------TPHNCLDDASAAMKLVLAIIERR 162 (364)
Q Consensus 139 ~------~~H~Al~DA~Ata~L~~~~le~g 162 (364)
. ..+-|..||.++..||..+.+..
T Consensus 166 ~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L 195 (208)
T 2e6m_A 166 NFPLTEDQKLYAATDAYAGLIIYQKLGNLG 195 (208)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 01225689999999998776543
No 29
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=97.69 E-value=0.00046 Score=67.87 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=86.3
Q ss_pred CCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhcCCCCCHHHHHHHHHHhhcC
Q 017922 3 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSN 82 (364)
Q Consensus 3 ~~~~ValD~ETTGl~~g~~~Ii~V~vVd~~G~vi~d~lVkP~~~I~d~~t~itGIT~e~L~~ap~~~~eV~~el~~fl~~ 82 (364)
...+|+||+|+++...-...++-|.+...+ . + .++.|. .+ +. ...|.+++..
T Consensus 21 ~~~~va~D~E~~~~~~~~~~l~liqla~~~-~-~--~lid~~-----------~l------~~-------~~~L~~ll~d 72 (375)
T 1yt3_A 21 AFPAIALDTEFVRTRTYYPQLGLIQLFDGE-H-L--ALIDPL-----------GI------TD-------WSPLKAILRD 72 (375)
T ss_dssp TSSEEEEEEEEECCSCSSCEEEEEEEECSS-C-E--EEECGG-----------GC------SC-------CHHHHHHHHC
T ss_pred CCCeEEEEeeecCCCcCCCceEEEEEecCC-c-E--EEEeCC-----------CC------CC-------hHHHHHHHcC
Confidence 346899999999875433334444443222 2 1 123321 11 00 1345666644
Q ss_pred -CCEEEEechhhHHHHHccc----CCCccchHHHhhhhcCCCCccHHHHHHHHhCCccCCCCC-------C------CCh
Q 017922 83 -GTILVGHSLNNDLEVLKLD----HPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGT-------P------HNC 144 (364)
Q Consensus 83 -~~iLVGHn~~fDl~fL~~~----~~~vIDT~~L~r~~~~~~~~sL~~L~k~~Lgi~i~~~~~-------~------H~A 144 (364)
+-+.||||+.+|+.+|... ...+.||...+..+.+..+++|..|++.|||..+..+.. . +-|
T Consensus 73 ~~i~Kv~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rpL~~~q~~YA 152 (375)
T 1yt3_A 73 PSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYA 152 (375)
T ss_dssp TTSEEEESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHH
T ss_pred CCceEEEeeHHHHHHHHHHHcCCCCCcEEEcHHHHHHcCCCCChhHHHHHHHHcCCCCCCCcccCCCCCCCCCHHHHHHH
Confidence 4568999999999999641 235799998888776656899999999999987754210 0 125
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 017922 145 LDDASAAMKLVLAIIERRV 163 (364)
Q Consensus 145 l~DA~Ata~L~~~~le~g~ 163 (364)
..||.++..||..+.+.-.
T Consensus 153 a~Da~~l~~L~~~L~~~L~ 171 (375)
T 1yt3_A 153 AADVWYLLPITAKLMVETE 171 (375)
T ss_dssp HHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6899999999987765543
No 30
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=97.68 E-value=0.00085 Score=65.49 Aligned_cols=159 Identities=15% Similarity=0.158 Sum_probs=108.5
Q ss_pred CCcEEEEEEeccCCCCCc--------c-------------cEEEEEEE--EcCCcE-----E--EEEEEcCCCccc-ccc
Q 017922 3 SNIMYAVDCEMVLCEDGS--------E-------------GLVRLCVV--DRNLKV-----T--IDELVKPEKAVA-DYR 51 (364)
Q Consensus 3 ~~~~ValD~ETTGl~~g~--------~-------------~Ii~V~vV--d~~G~v-----i--~d~lVkP~~~I~-d~~ 51 (364)
.-+|||+|+|++|+.... + .|+++++. +.+|+. . |+-+.+....+- ...
T Consensus 44 ~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~~G~~p~~~~twqFNF~F~~~~d~~~~~S 123 (333)
T 2p51_A 44 RYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFNFTFNLQDDMYAPES 123 (333)
T ss_dssp TSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSCCCTTCSEEEEEBCCCTTTSCCCHHH
T ss_pred hCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCCCCCceeEEEEEEECCcccccCHHH
Confidence 458999999999985210 0 36777654 566653 3 333333322110 001
Q ss_pred c---ccCCCChhhhcCCCCCHHHHHHHHHH---hhcCCCEEEEechhhHHHHHcc--------------------cCCCc
Q 017922 52 S---EITGLTADDLVGVTCSLAEIQKRMKK---LLSNGTILVGHSLNNDLEVLKL--------------------DHPRV 105 (364)
Q Consensus 52 t---~itGIT~e~L~~ap~~~~eV~~el~~---fl~~~~iLVGHn~~fDl~fL~~--------------------~~~~v 105 (364)
. .-+||.-+.....++++.+..+.|.. .++.+-.+|.++-.+|+.+|=. .+|.+
T Consensus 124 I~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP~i 203 (333)
T 2p51_A 124 IELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKN 203 (333)
T ss_dssp HHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSSSE
T ss_pred HHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCCCceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHHCcch
Confidence 1 22688888877777777766666653 3445578999999999997732 24668
Q ss_pred cchHHHhhhhcCCCCccHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHhcccC
Q 017922 106 IDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERRVDN 165 (364)
Q Consensus 106 IDT~~L~r~~~~~~~~sL~~L~k~~Lgi~i~~~~~~H~Al~DA~Ata~L~~~~le~g~~~ 165 (364)
+||-.|++.... ..-+|..|+ +.||+.-. +..|.|-.||..|+.+|.++.+..++.
T Consensus 204 YD~K~l~~~~~~-l~ggL~~lA-~~L~v~Ri--g~~HqAGsDSlLT~~~F~kl~~~~f~~ 259 (333)
T 2p51_A 204 YDIKYIMKSVLN-NSKGLQDIA-DDLQIHRI--GPQHQAGSDALLTARIFFEIRSRYFDG 259 (333)
T ss_dssp EEHHHHHTTTTC-CCCCHHHHH-HHTTCCCC--SCTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHhcc-ccCCHHHHH-HHcCCCcc--CcchhhhhHHHHHHHHHHHHHHHhcCC
Confidence 999999888654 346899999 88887653 468999999999999999988765443
No 31
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=97.66 E-value=7.5e-05 Score=78.23 Aligned_cols=130 Identities=16% Similarity=0.076 Sum_probs=91.3
Q ss_pred cEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhcCCCCCHHHHHHHHHHhhc-CC
Q 017922 5 IMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLS-NG 83 (364)
Q Consensus 5 ~~ValD~ETTGl~~g~~~Ii~V~vVd~~G~vi~d~lVkP~~~I~d~~t~itGIT~e~L~~ap~~~~eV~~el~~fl~-~~ 83 (364)
.-.++|+||++.++-..+|+.|++-...+ . .||.+. . ..+...|..++. .+
T Consensus 30 ~~~aldtE~~~~~~~~a~Lvgisla~~~~--a--~yIp~~----~--------------------~~~l~~Lk~lLed~~ 81 (592)
T 3pv8_A 30 DKAALVVEVVEENYHDAPIVGIAVVNEHG--R--FFLRPE----T--------------------ALADPQFVAWLGDET 81 (592)
T ss_dssp SEEEEEEECCSSSCTTCCCCEEEEEETTE--E--EEECHH----H--------------------HTTCHHHHHHHTCTT
T ss_pred cCcEEEEEEcCCccCcccEEEEEEEcCCc--e--EEEccc----h--------------------hhHHHHHHHHHhCCC
Confidence 34699999999997777788777765442 2 344211 0 123355777773 23
Q ss_pred CEEEEechhhHHHHHccc---CC-CccchHHHhhhhcC-CCCccHHHHHHHHhCCccCCC------C----------CCC
Q 017922 84 TILVGHSLNNDLEVLKLD---HP-RVIDTSLIFKYVDE-YRRPSLYNLCKSVLGYEIRKK------G----------TPH 142 (364)
Q Consensus 84 ~iLVGHn~~fDl~fL~~~---~~-~vIDT~~L~r~~~~-~~~~sL~~L~k~~Lgi~i~~~------~----------~~H 142 (364)
...||||+.+|+.+|... .+ .+.||...+..+.| ..+|+|++||++|||..+... + ..+
T Consensus 82 i~KV~hn~K~Dl~vL~~~Gi~l~g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~~ 161 (592)
T 3pv8_A 82 KKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAE 161 (592)
T ss_dssp SEEEESSHHHHHHHHHHTTCCCCCEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHHHH
T ss_pred CeEEEechHHHHHHHHHcCCCCCCccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhcCccccccCccHHHHHH
Confidence 589999999999999653 22 36899998888888 568999999999999876420 0 013
Q ss_pred ChHHHHHHHHHHHHHHHHhc
Q 017922 143 NCLDDASAAMKLVLAIIERR 162 (364)
Q Consensus 143 ~Al~DA~Ata~L~~~~le~g 162 (364)
.|..||.++..|+..+....
T Consensus 162 YAa~DA~~l~~L~~~L~~~L 181 (592)
T 3pv8_A 162 HLVRKAAAIWELERPFLDEL 181 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46789999999997776543
No 32
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=97.65 E-value=0.00048 Score=66.12 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=103.1
Q ss_pred CCcEEEEEEeccCCCCC---c------------------ccEEEEEEE--EcCCcE------E--EEEEEcCCCcccc-c
Q 017922 3 SNIMYAVDCEMVLCEDG---S------------------EGLVRLCVV--DRNLKV------T--IDELVKPEKAVAD-Y 50 (364)
Q Consensus 3 ~~~~ValD~ETTGl~~g---~------------------~~Ii~V~vV--d~~G~v------i--~d~lVkP~~~I~d-~ 50 (364)
.-+|||+|+|++|+... . -.|+++++. +.+|+. . |+-+.+....+-. .
T Consensus 37 ~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~g~~p~~~~~~wqFNF~F~~~~d~~~~~ 116 (289)
T 1uoc_A 37 QYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKKEIMSTE 116 (289)
T ss_dssp TSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEEEBCCCTTCCCCCHH
T ss_pred hCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCcCCCCcceEEEEEEECCccccccHH
Confidence 45899999999998411 0 147887765 555652 2 3333333221100 0
Q ss_pred c---cccCCCChhhhcCCCCCHHHHHHHHHH---hhcCCCEEEEechhhHHHHHcc--------------------cCCC
Q 017922 51 R---SEITGLTADDLVGVTCSLAEIQKRMKK---LLSNGTILVGHSLNNDLEVLKL--------------------DHPR 104 (364)
Q Consensus 51 ~---t~itGIT~e~L~~ap~~~~eV~~el~~---fl~~~~iLVGHn~~fDl~fL~~--------------------~~~~ 104 (364)
. -.-+||.-+.....+++..+..+.+.. .++++-.+|.++-.+|+.+|=. .+|.
T Consensus 117 SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~FP~ 196 (289)
T 1uoc_A 117 SLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPN 196 (289)
T ss_dssp HHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHCSS
T ss_pred HHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceEEEccCcchHHHHHHHhccccCCcCHHHHHHHHHHhCcc
Confidence 0 123688777777666676655555443 2345678999999999997732 2466
Q ss_pred ccchHHHhhhhcCC--------------CCccHHHHHHHHhCCccCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 017922 105 VIDTSLIFKYVDEY--------------RRPSLYNLCKSVLGYEIRKKGTPHNCLDDASAAMKLVLAIIERR 162 (364)
Q Consensus 105 vIDT~~L~r~~~~~--------------~~~sL~~L~k~~Lgi~i~~~~~~H~Al~DA~Ata~L~~~~le~g 162 (364)
++||-.|++..... ...+|..|+ +.||++.. +..|.|-.||..|+.+|.++.+..
T Consensus 197 iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA-~~L~v~r~--g~~HqAGsDSllT~~~F~kl~~~~ 265 (289)
T 1uoc_A 197 FYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLA-DELGLPRF--SIFTTTGGQSLLMLLSFCQLSKLS 265 (289)
T ss_dssp EEEHHHHHHHHTTTCC-------------CCSHHHHH-HHTTCCCC--GGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred ceeHHHHHHHHHhccCcccccccccccccCCCHHHHH-HHcCCCcc--CcccccHHHHHHHHHHHHHHHHHH
Confidence 89999998876431 246899999 88898754 468999999999999999877544
No 33
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=97.64 E-value=0.00025 Score=64.67 Aligned_cols=84 Identities=12% Similarity=0.152 Sum_probs=63.6
Q ss_pred HHHhhc-CCCEEEEechhhHHHHHcccC----CCccchHHHhhhhcC---CCCccHHHHHHHHhCCcc-CCC--------
Q 017922 76 MKKLLS-NGTILVGHSLNNDLEVLKLDH----PRVIDTSLIFKYVDE---YRRPSLYNLCKSVLGYEI-RKK-------- 138 (364)
Q Consensus 76 l~~fl~-~~~iLVGHn~~fDl~fL~~~~----~~vIDT~~L~r~~~~---~~~~sL~~L~k~~Lgi~i-~~~-------- 138 (364)
|.+|+. ++-+.|||++.+|+..|...+ ..++|+..++....+ ..+.+|..|++.+||.++ ...
T Consensus 100 L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~~~~SdW~~ 179 (206)
T 1vk0_A 100 LYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEK 179 (206)
T ss_dssp HHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTGGG
T ss_pred HHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCCCcccCCCCC
Confidence 556663 346789999999999997643 348999988765544 467899999999999998 210
Q ss_pred ----CCCCChHHHHHHHHHHHHHHH
Q 017922 139 ----GTPHNCLDDASAAMKLVLAII 159 (364)
Q Consensus 139 ----~~~H~Al~DA~Ata~L~~~~l 159 (364)
..-+-|..||.++.+||.++.
T Consensus 180 pLs~~Qi~YAA~Da~~l~~l~~~L~ 204 (206)
T 1vk0_A 180 AGPEEQLEAAAIEGWLIVNVWDQLS 204 (206)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 013568899999999998764
No 34
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.44 E-value=0.00094 Score=72.60 Aligned_cols=146 Identities=16% Similarity=0.132 Sum_probs=92.9
Q ss_pred CcEEEEEEec-cCC---CCC----cccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhcCCCCCHHHHHHH
Q 017922 4 NIMYAVDCEM-VLC---EDG----SEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKR 75 (364)
Q Consensus 4 ~~~ValD~ET-TGl---~~g----~~~Ii~V~vVd~~G~vi~d~lVkP~~~I~d~~t~itGIT~e~L~~ap~~~~eV~~e 75 (364)
-++++||+|| ++. -|. .+.|++|++++.+|...+ .+++|+.. +...+.+. ...+...+ +..+++..
T Consensus 190 l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~~~~g~~~~-~~~~~~~~-~~~~~~i~---~~~v~~~~-~E~~LL~~ 263 (847)
T 1s5j_A 190 IKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKV-LVLNRNDV-NEGSVKLD---GISVERFN-TEYELLGR 263 (847)
T ss_dssp CCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEE-EEECSSCC-CCCCEEET---TEEEEEES-SHHHHHHH
T ss_pred ceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEEccCCCcEE-EEEeCCcc-cccccCCC---CCeEEEeC-CHHHHHHH
Confidence 4789999999 742 122 257999999877765322 34555321 11112222 22345556 78899999
Q ss_pred HHHhhcCCCEEEEech-hhHHHHHccc-----C-----C-------------C-ccchHHHhhh------hcC--CCCcc
Q 017922 76 MKKLLSNGTILVGHSL-NNDLEVLKLD-----H-----P-------------R-VIDTSLIFKY------VDE--YRRPS 122 (364)
Q Consensus 76 l~~fl~~~~iLVGHn~-~fDl~fL~~~-----~-----~-------------~-vIDT~~L~r~------~~~--~~~~s 122 (364)
|.+++..-.+|||||. .||+.+|... . | + .+|...+++. .+. ..+++
T Consensus 264 f~~~i~~~diivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~kl~sys 343 (847)
T 1s5j_A 264 FFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGKYNEYN 343 (847)
T ss_dssp HHHHHTTCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTCCSSCS
T ss_pred HHHHhccCCEEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhcccccccccc
Confidence 9999976679999997 5999998531 0 1 1 2566665542 121 46899
Q ss_pred HHHHHHHHhCCccCCC------C----CCCChHHHHHHHHHHH
Q 017922 123 LYNLCKSVLGYEIRKK------G----TPHNCLDDASAAMKLV 155 (364)
Q Consensus 123 L~~L~k~~Lgi~i~~~------~----~~H~Al~DA~Ata~L~ 155 (364)
|+.+|+.+||..-..- . -.+-++.||..+..|+
T Consensus 344 L~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 344 LDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp HHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 9999988998753210 0 0122577999999985
No 35
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=97.37 E-value=0.00056 Score=68.45 Aligned_cols=88 Identities=18% Similarity=0.150 Sum_probs=63.7
Q ss_pred HHHHhhcC-CCEEEEechhhHHHHHccc----CCCccchHHHhhhhcCCCCccHHHHHHHHhCCccCCCCCC--------
Q 017922 75 RMKKLLSN-GTILVGHSLNNDLEVLKLD----HPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTP-------- 141 (364)
Q Consensus 75 el~~fl~~-~~iLVGHn~~fDl~fL~~~----~~~vIDT~~L~r~~~~~~~~sL~~L~k~~Lgi~i~~~~~~-------- 141 (364)
.|.+++.. +-+.||||+.+|+.+|... ...+.||...+..+.+ .+++|..|++.+||..+..+...
T Consensus 150 ~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~~-~~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL 228 (410)
T 2hbj_A 150 ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGL-PRHSLAYLLENFANFKTSKKYQLADWRIRPL 228 (410)
T ss_dssp GGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTC-SCCSHHHHHHHHSCCCCCCTTTTSCTTCSSC
T ss_pred HHHHHHcCCCceEEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHhCC-CccCHHHHHHHHcCCCCCccccccCCCCCCC
Confidence 35566633 4568999999999999652 2348999987777654 37999999999989877542110
Q ss_pred -----CChHHHHHHHHHHHHHHHHhcc
Q 017922 142 -----HNCLDDASAAMKLVLAIIERRV 163 (364)
Q Consensus 142 -----H~Al~DA~Ata~L~~~~le~g~ 163 (364)
+-|..||.++..||..+...-.
T Consensus 229 ~~~q~~YAa~Da~~ll~L~~~L~~~L~ 255 (410)
T 2hbj_A 229 SKPMTAAARADTHFLLNIYDQLRNKLI 255 (410)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1256899999999987776543
No 36
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0011 Score=72.79 Aligned_cols=144 Identities=16% Similarity=0.217 Sum_probs=94.0
Q ss_pred CcEEEEEEeccCC-----CCCcccEEEEEEE-EcCCcE--EEEE-E-EcCCCcccccccccCCCChhhhcCCCCCHHHHH
Q 017922 4 NIMYAVDCEMVLC-----EDGSEGLVRLCVV-DRNLKV--TIDE-L-VKPEKAVADYRSEITGLTADDLVGVTCSLAEIQ 73 (364)
Q Consensus 4 ~~~ValD~ETTGl-----~~g~~~Ii~V~vV-d~~G~v--i~d~-l-VkP~~~I~d~~t~itGIT~e~L~~ap~~~~eV~ 73 (364)
-++++||+||++. ++..+.|+.|+.+ ..+|.. .... + +.+..+ +....+...+ +-.+++
T Consensus 249 lrilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r~~f~l~~~~~----------~~~~~V~~~~-sE~eLL 317 (919)
T 3iay_A 249 LRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSP----------ITGSMIFSHA-TEEEML 317 (919)
T ss_dssp CEEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCCCC----------BTTBEEEEES-SHHHHH
T ss_pred ceEEEEEEEECCCCCCCCCCCCCcEEEEEEEEecCCCcccceeEEEEecCCCC----------CCCCeEEECC-CHHHHH
Confidence 3689999999853 2345689999865 445531 1111 1 222211 2223455566 788999
Q ss_pred HHHHHhhc--CCCEEEEech-hhHHHHHcc-------cC----------C-------------------------C-ccc
Q 017922 74 KRMKKLLS--NGTILVGHSL-NNDLEVLKL-------DH----------P-------------------------R-VID 107 (364)
Q Consensus 74 ~el~~fl~--~~~iLVGHn~-~fDl~fL~~-------~~----------~-------------------------~-vID 107 (364)
..|.+++. .-.+|||||+ .||+.+|.. .. + + .+|
T Consensus 318 ~~F~~~i~~~DPDIIvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~lD 397 (919)
T 3iay_A 318 SNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQLD 397 (919)
T ss_dssp HHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEEEE
T ss_pred HHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCeEEEE
Confidence 99999883 3489999998 599999832 00 0 1 468
Q ss_pred hHHHhhhhcCCCCccHHHHHHHHhCCccCCC----------CC-------CCChHHHHHHHHHHHHHH
Q 017922 108 TSLIFKYVDEYRRPSLYNLCKSVLGYEIRKK----------GT-------PHNCLDDASAAMKLVLAI 158 (364)
Q Consensus 108 T~~L~r~~~~~~~~sL~~L~k~~Lgi~i~~~----------~~-------~H~Al~DA~Ata~L~~~~ 158 (364)
+..+.+......+|+|+.+|+.+||..-..- +. .+-++.||..+++||.++
T Consensus 398 l~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 398 LLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp HHHHHHHHCCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHhhcCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877666889999999999998653310 00 012368999999998765
No 37
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=97.03 E-value=0.0019 Score=65.11 Aligned_cols=80 Identities=20% Similarity=0.217 Sum_probs=57.9
Q ss_pred cCCCEEEEechhhHHHHHcc-------------------cCCCccchHHHhhhhc-C--CCCccHHHHHHHHhCCc-c--
Q 017922 81 SNGTILVGHSLNNDLEVLKL-------------------DHPRVIDTSLIFKYVD-E--YRRPSLYNLCKSVLGYE-I-- 135 (364)
Q Consensus 81 ~~~~iLVGHn~~fDl~fL~~-------------------~~~~vIDT~~L~r~~~-~--~~~~sL~~L~k~~Lgi~-i-- 135 (364)
..+.++||||.-.|+-+|-. .+|.++||-.|+.... . ..+.+|..|. ..|... .
T Consensus 279 ~s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~sL~~l~-~~l~~~~~~~ 357 (430)
T 2a1r_A 279 NSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELE-KRLKETPFNP 357 (430)
T ss_dssp HHCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTTCSCCSHHHHH-HHTTSTTCCC
T ss_pred hCCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhccchhhccCCCCHHHHH-HHHHhCCCCC
Confidence 46899999999999997743 2577999988886542 2 4567899998 544321 1
Q ss_pred ---C----------CCCCCCChHHHHHHHHHHHHHHHHh
Q 017922 136 ---R----------KKGTPHNCLDDASAAMKLVLAIIER 161 (364)
Q Consensus 136 ---~----------~~~~~H~Al~DA~Ata~L~~~~le~ 161 (364)
. ..+..|.|--||.+|+.+|.++...
T Consensus 358 p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~ 396 (430)
T 2a1r_A 358 PKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANY 396 (430)
T ss_dssp CCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHH
T ss_pred CeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHH
Confidence 0 0134699999999999999987743
No 38
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=96.93 E-value=0.0058 Score=66.85 Aligned_cols=153 Identities=13% Similarity=0.042 Sum_probs=100.1
Q ss_pred CcEEEEEEeccCCC--C----CcccEEEEEEEEcCCcE--EEEEEEcCCCcccccccc---------cCCCChhhhcC--
Q 017922 4 NIMYAVDCEMVLCE--D----GSEGLVRLCVVDRNLKV--TIDELVKPEKAVADYRSE---------ITGLTADDLVG-- 64 (364)
Q Consensus 4 ~~~ValD~ETTGl~--~----g~~~Ii~V~vVd~~G~v--i~d~lVkP~~~I~d~~t~---------itGIT~e~L~~-- 64 (364)
-+.++||+|++.-+ | +.++|+.|++.|..+.. +|+.|-.|......|.+. -..+..+.+.+
T Consensus 108 ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 187 (903)
T 3qex_A 108 IRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEIIDKII 187 (903)
T ss_dssp SCEEEEEEECCCTTSSCCTTTCCSCCCEEEEEETTTTEEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCHHHHTTEE
T ss_pred ccEEEEeEEeCCCCCCCCcccCCCCEEEEEEEeCCCCEEEEEEeeccccccccccccccccccccccccccccccCCCeE
Confidence 47899999997521 1 23589999999986653 344444454444444321 12234443333
Q ss_pred ---CCCCHHHHHHHHHHhhc--CCCEEEEech-hhHHHHHcc------c---------C---------------------
Q 017922 65 ---VTCSLAEIQKRMKKLLS--NGTILVGHSL-NNDLEVLKL------D---------H--------------------- 102 (364)
Q Consensus 65 ---ap~~~~eV~~el~~fl~--~~~iLVGHn~-~fDl~fL~~------~---------~--------------------- 102 (364)
.+ +-.+++.+|.+++. .-.+|+|||+ .||+.+|.. . .
T Consensus 188 v~~f~-sE~eLL~~F~~~I~~~DPDIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~~~~~i~ 266 (903)
T 3qex_A 188 YMPFD-NEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIITLF 266 (903)
T ss_dssp EEEES-SHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEEEEET
T ss_pred EEEcC-CHHHHHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCCceeEEEe
Confidence 23 67789999999885 4589999998 589987721 0 0
Q ss_pred CC-ccchHHHhhhh-c-CCCCccHHHHHHHHhCCccCCCC-------------CCCChHHHHHHHHHHHHH
Q 017922 103 PR-VIDTSLIFKYV-D-EYRRPSLYNLCKSVLGYEIRKKG-------------TPHNCLDDASAAMKLVLA 157 (364)
Q Consensus 103 ~~-vIDT~~L~r~~-~-~~~~~sL~~L~k~~Lgi~i~~~~-------------~~H~Al~DA~Ata~L~~~ 157 (364)
.+ ++|+..+.+.. . ...+|+|+.+|+.+||..-..-. -.+-++.||..+++||.+
T Consensus 267 GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 267 GISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp TCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 12 47888888764 2 36799999999999987643200 001136899999999976
No 39
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=96.93 E-value=0.0098 Score=59.96 Aligned_cols=87 Identities=16% Similarity=0.253 Sum_probs=62.3
Q ss_pred HHHHHhhcCCCEEEEechhhHHHHHcc---cCCCccchHHHhhhhcCCCCccHHHHHHHHhCCccCCCCC-------C--
Q 017922 74 KRMKKLLSNGTILVGHSLNNDLEVLKL---DHPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGT-------P-- 141 (364)
Q Consensus 74 ~el~~fl~~~~iLVGHn~~fDl~fL~~---~~~~vIDT~~L~r~~~~~~~~sL~~L~k~~Lgi~i~~~~~-------~-- 141 (364)
..|.+++ .+...|+|++.+|+.+|+. ....++||...+..+.+ .+++|..|+..++|.....+.. .
T Consensus 85 ~~L~~lL-~d~~KV~h~~k~Dl~~L~~~gi~~~~~fDt~lAa~lL~~-~~~gL~~L~~~~lg~~~~K~~~~sdw~~rpLs 162 (440)
T 3cym_A 85 NDFNRAV-GDAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLGL-KRFGLAAVTEHFLGLTLAKEHSAADWSYRPLP 162 (440)
T ss_dssp HHHHHHH-TTCEEEESSHHHHHHHHHHHTCCCCEEEEHHHHHHHTTC-SSCSHHHHHHHHHCEECCCCCTTCCTTCSSCC
T ss_pred HHHHHHH-CCCCEEEEcCHHHHHHHHHcCCcCCceehHHHHHHHhCC-CCCCHHHHHHHHhCCCcccccccCCCcCCCCC
Confidence 4577777 5668999999999999963 22347999554444444 4899999999998977654210 1
Q ss_pred ----CChHHHHHHHHHHHHHHHHhc
Q 017922 142 ----HNCLDDASAAMKLVLAIIERR 162 (364)
Q Consensus 142 ----H~Al~DA~Ata~L~~~~le~g 162 (364)
..|..||.++..||..+...-
T Consensus 163 ~~q~~YAa~Da~~Ll~L~~~L~~~L 187 (440)
T 3cym_A 163 RDWRNYAALDVELLIELETKMRAEL 187 (440)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 126789999999998776543
No 40
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.90 E-value=0.0031 Score=50.59 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=51.9
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCccCCCC
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQSKDSY 247 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~~~d~~ 247 (364)
.++++..||..++.++|..+|...-.|. +...+ .|. .++|+|.|.+.++|..|.+.|+|..-....
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 26 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS--SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 95 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS--SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCc
Confidence 4689999999999999999998754453 22222 233 789999999999999999999998765443
No 41
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.79 E-value=0.0019 Score=50.80 Aligned_cols=63 Identities=17% Similarity=0.262 Sum_probs=49.1
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+++..||..++.++|..+|.+...+.+...+......++|+|+|.+.++|..|.+.|+|..
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 78 (102)
T 2fc8_A 16 KTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 78 (102)
T ss_dssp SSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCe
Confidence 358999999999999999999975444433322211236899999999999999999998854
No 42
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=96.78 E-value=0.0087 Score=67.31 Aligned_cols=154 Identities=14% Similarity=0.106 Sum_probs=91.4
Q ss_pred CcEEEEEEeccCC--C----C----CcccEEEEEEE-EcCCc-EEEEEEE-cCC-C-ccccccc--ccCCCChhhhcCCC
Q 017922 4 NIMYAVDCEMVLC--E----D----GSEGLVRLCVV-DRNLK-VTIDELV-KPE-K-AVADYRS--EITGLTADDLVGVT 66 (364)
Q Consensus 4 ~~~ValD~ETTGl--~----~----g~~~Ii~V~vV-d~~G~-vi~d~lV-kP~-~-~I~d~~t--~itGIT~e~L~~ap 66 (364)
-++++||+||++. + | ..+.|+.|+.+ ...|. .....+| ... . .+.++.. .-.|+....+...+
T Consensus 320 lrvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~~~~~v~~l~~~~~~~~f~~~~k~~~~~~~~V~~~~ 399 (1193)
T 2gv9_A 320 YKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTALEHVLLFSLGSCDLPESHLNELAARGLPTPVVLEFD 399 (1193)
T ss_dssp CEEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCEEEEEEEEESCCCCCHHHHHHHHHTTCCCCEEEEES
T ss_pred ceEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCcceEEEEECCCcCCcchhhhhcccccCCCceEEecC
Confidence 3789999999853 1 1 23579999865 32221 1222222 111 1 1111110 00111111244445
Q ss_pred CCHHHHHHHHHHhhcC--CCEEEEech-hhHHHHHccc--------CC-------------------------------C
Q 017922 67 CSLAEIQKRMKKLLSN--GTILVGHSL-NNDLEVLKLD--------HP-------------------------------R 104 (364)
Q Consensus 67 ~~~~eV~~el~~fl~~--~~iLVGHn~-~fDl~fL~~~--------~~-------------------------------~ 104 (364)
+-.+++..|.+++.. -.||||||+ .||+.+|... .+ +
T Consensus 400 -sE~eLL~~F~~~I~~~DPDIIvGyNi~~FDlpyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~~~i~GR 478 (1193)
T 2gv9_A 400 -SEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVNGM 478 (1193)
T ss_dssp -SHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEETTB
T ss_pred -CHHHHHHHHHHHHHhcCCCEEEEcCCcCccHHHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccceEEEcCe
Confidence 678899999988853 359999998 5899888421 00 1
Q ss_pred -ccchHHHhhhhcCCCCccHHHHHHHHhCCccCCC-----------C------CCCChHHHHHHHHHHHHHH
Q 017922 105 -VIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKK-----------G------TPHNCLDDASAAMKLVLAI 158 (364)
Q Consensus 105 -vIDT~~L~r~~~~~~~~sL~~L~k~~Lgi~i~~~-----------~------~~H~Al~DA~Ata~L~~~~ 158 (364)
++|+..+.+......+|+|+.+|+.+||..-..- + -.+-++.||..++.||.++
T Consensus 479 v~lDl~~~~~~~~kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl 550 (1193)
T 2gv9_A 479 VNIDMYGIITDKIKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp EEEEHHHHHTTTCCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHhccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677776666555789999999988898653320 0 0123467999999998876
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=96.58 E-value=0.0016 Score=51.75 Aligned_cols=61 Identities=21% Similarity=0.355 Sum_probs=48.3
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-ec--cccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~--~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
+|++..||..++.++|..+|...-.|. ++ ..+. .|. .+.|.|.|.+.++|..|.+.|+|..
T Consensus 21 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-tg~~kG~afV~f~~~~~A~~Ai~~lng~~ 85 (99)
T 4fxv_A 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKV-AGHSLGYGFVNYVTAKDAERAINTLNGLR 85 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSS-SCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCC-CCcccccEEEEECCHHHHHHHHHHhCCCE
Confidence 589999999999999999997754553 22 2222 233 6799999999999999999998864
No 44
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.53 E-value=0.0032 Score=49.40 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=49.5
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+++..||..++.++|..+|...-.|.+..... ....++|+|+|.+.++|..|.+.|+|..
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g~~ 77 (101)
T 2fc9_A 16 KTLVLSNLSYSATEETLQEVFEKATFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNKRE 77 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSS-SCBCSEEEEECSSHHHHHHHHHHTSSEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCC-CCEeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 3589999999999999999999866665433322 1236799999999999999999998743
No 45
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=96.50 E-value=0.024 Score=61.25 Aligned_cols=138 Identities=17% Similarity=0.182 Sum_probs=87.4
Q ss_pred CCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhcCCCCCHHHHHHHHHHhhcC
Q 017922 3 SNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLSN 82 (364)
Q Consensus 3 ~~~~ValD~ETTGl~~g~~~Ii~V~vVd~~G~vi~d~lVkP~~~I~d~~t~itGIT~e~L~~ap~~~~eV~~el~~fl~~ 82 (364)
+-++++||+|+.+ .| .|..|+..+..-+.+| .+=.|...- .+..-.+...+ +-.+++..|.+++..
T Consensus 152 ~lrilsfDIE~~~--~g--~i~~I~~~~~~~~~v~-~l~~~~~~~--------~~~~~~V~~f~-~E~~lL~~f~~~i~~ 217 (786)
T 3k59_A 152 PLKWVSIDIETTR--HG--ELYCIGLEGCGQRIVY-MLGPENGDA--------SSLDFELEYVA-SRPQLLEKLNAWFAN 217 (786)
T ss_dssp CCCEEEEEEEECT--TS--CEEEEEEEETTEEEEE-EESSCCSCC--------TTCSSEEEEES-SHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEEcC--CC--CEEEEEecCCCCCeEE-EEecCCCCC--------CCCCceEEEeC-CHHHHHHHHHHHHHH
Confidence 3479999999984 33 5888886644322222 111121110 01111233444 677888988888853
Q ss_pred C--CEEEEechh-hHHHHHccc-----------------------C----------CC-ccchHHHhhhh-cCCCCccHH
Q 017922 83 G--TILVGHSLN-NDLEVLKLD-----------------------H----------PR-VIDTSLIFKYV-DEYRRPSLY 124 (364)
Q Consensus 83 ~--~iLVGHn~~-fDl~fL~~~-----------------------~----------~~-vIDT~~L~r~~-~~~~~~sL~ 124 (364)
- .++||||.. ||+.+|... . .+ ++|+..+.+.. +...+|+|+
T Consensus 218 ~dPDii~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~~~l~SysL~ 297 (786)
T 3k59_A 218 YDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLE 297 (786)
T ss_dssp HCCSEEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTTCCCSCCSHH
T ss_pred cCCCEEEecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhccCCCCCCCHH
Confidence 3 499999975 899998420 0 01 47777777653 347899999
Q ss_pred HHHHHHhCCccCCCCCCCC----------------------hHHHHHHHHHHHHHH
Q 017922 125 NLCKSVLGYEIRKKGTPHN----------------------CLDDASAAMKLVLAI 158 (364)
Q Consensus 125 ~L~k~~Lgi~i~~~~~~H~----------------------Al~DA~Ata~L~~~~ 158 (364)
++|+.+||..-. .|+ ++.||..+++||.++
T Consensus 298 ~Va~~~Lg~~K~----~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 298 TVAQELLGEGKS----IDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp HHHHHHHCCCCC-----CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCc----ccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999986532 122 368999999998764
No 46
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.48 E-value=0.004 Score=47.20 Aligned_cols=61 Identities=20% Similarity=0.215 Sum_probs=48.0
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++.+||..++.++|..+|...-.|. +...+. .|. .+.|.|.|.+.++|..|.+.|+|..
T Consensus 7 ~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (85)
T 1x4e_A 7 GLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKT-TNKCKGYGFVDFDSPSAAQKAVTALKASG 71 (85)
T ss_dssp EEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSS-SCSCCSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCCcCcEEEEEECCHHHHHHHHHHhcCCe
Confidence 578899999999999999998765553 222222 233 6789999999999999999998864
No 47
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.44 E-value=0.0049 Score=48.56 Aligned_cols=64 Identities=22% Similarity=0.253 Sum_probs=50.1
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCccCC
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKD 245 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d 245 (364)
.+++..||..++.++|..+|...-.|. +...+. ....++|+|.|.+.++|..|.+.|+|..-.+
T Consensus 17 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 17 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS-SCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 589999999999999999998755553 222222 1227899999999999999999999876544
No 48
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.36 E-value=0.0048 Score=47.54 Aligned_cols=63 Identities=14% Similarity=0.250 Sum_probs=48.6
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+++.+||..++.++|..+|...-.|. +...+......+.|+|.|.+.++|..|.+.|+|..
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 82 (94)
T 2e5h_A 17 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQ 82 (94)
T ss_dssp TSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCe
Confidence 3689999999999999999998755553 22222211236799999999999999999998754
No 49
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.35 E-value=0.0053 Score=48.29 Aligned_cols=63 Identities=27% Similarity=0.378 Sum_probs=49.6
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.++++..||..++.++|..+|...-.|. +.-... .|. .++|+|.|.+.++|..|.+.|+|..-
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (103)
T 2d9p_A 16 VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 80 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3689999999999999999998755553 221122 333 78999999999999999999998653
No 50
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=96.25 E-value=0.0041 Score=49.42 Aligned_cols=64 Identities=13% Similarity=0.192 Sum_probs=48.9
Q ss_pred HHhhhcCCCCCCCCHHHhcccCCCCceee---eccc-cccCC-CceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 179 RARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAV-KRIRG-DNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 179 ~~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~-~~~~g-~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
+..+++..||+.++.++|..+|...-.++ ++-. .+..| ..+.|.|.|.+.++|..|.+.|+|..
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~ 77 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLH 77 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSS
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCC
Confidence 44689999999999999999998744332 2211 11123 36899999999999999999999864
No 51
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.25 E-value=0.0042 Score=48.89 Aligned_cols=63 Identities=22% Similarity=0.315 Sum_probs=48.8
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.++++..||..++.++|..+|...-.|. +.-...-.+..++|+|+|.+.++|..|.+.|.|..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 79 (103)
T 2cq3_A 16 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 79 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3689999999999999999998755553 22111112357899999999999999999998764
No 52
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.24 E-value=0.0066 Score=51.16 Aligned_cols=93 Identities=11% Similarity=0.158 Sum_probs=64.0
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-ec--cccccC--CCceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcceEEE
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIR--GDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQKLVE 255 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~--~~~~~~--g~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~qk~v~ 255 (364)
++++.+||+.++.++|..+|...-.|. +. ..+.+. ...+.|.|.|.+.++|..|.+.|.|..-.+..|++.+.-.
T Consensus 5 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~ 84 (175)
T 3nmr_A 5 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKP 84 (175)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcc
Confidence 578899999999999999997754553 22 222211 2478999999999999999999999887776676655332
Q ss_pred EecCCC---CeEEEEEEeecc
Q 017922 256 FQSNAG---IIASLYVRKMVC 273 (364)
Q Consensus 256 ~~~~~g---~~~~~~vrkm~~ 273 (364)
-..... ....|||+.+-.
T Consensus 85 ~~~~~~~~~~~~~l~v~nl~~ 105 (175)
T 3nmr_A 85 ADSEKNNAVEDRKLFIGMISK 105 (175)
T ss_dssp CGGGCCSCGGGSEEEEESCCT
T ss_pred ccccccccCCCCeEEEcCCCC
Confidence 221111 124677776643
No 53
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.23 E-value=0.0029 Score=50.43 Aligned_cols=62 Identities=23% Similarity=0.408 Sum_probs=48.3
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+++..||..++.++|..+|...-.|. +.-... +...++|+|.|.+.++|..|.+.|+|..
T Consensus 23 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~ 85 (109)
T 1x4a_A 23 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR-RGGPPFAFVEFEDPRDAEDAVYGRDGYD 85 (109)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS-SSSSCCEEEEESCHHHHHHHHHHHTTCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-CCCCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 3689999999999999999998754553 221222 2246799999999999999999998854
No 54
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=96.22 E-value=0.0022 Score=52.09 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=48.0
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
++++..||..++.++|..+|...-.|. ++-...-++..++|+|.|.+.++|..|.+.|+|..
T Consensus 7 ~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~ 69 (115)
T 4f25_A 7 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGML 69 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred EEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCE
Confidence 589999999999999999997754553 22111112347899999999999999999998864
No 55
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.19 E-value=0.0084 Score=47.12 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=48.7
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+++..||..++.++|..+|...-.|. +...+. .|. .++|+|.|.+.++|..|.+.|+|..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 81 (103)
T 2cq0_A 16 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKT-TGQSKGFAFISFHRREDAARAIAGVSGFG 81 (103)
T ss_dssp EEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSS-SCSEEEEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCC-CCceeeEEEEEECCHHHHHHHHHHcCCCe
Confidence 3589999999999999999998765553 222222 233 7899999999999999999998764
No 56
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.17 E-value=0.0045 Score=47.50 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=48.1
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-eccccccCC-CceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRG-DNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g-~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
++++..||..++.++|..+|...-.|. +.-... .| ..++|+|.|.+.++|..|.+.|+|..-
T Consensus 10 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 73 (92)
T 2dgv_A 10 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKL 73 (92)
T ss_dssp EEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCB
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 588999999999999999997754443 211121 23 367999999999999999999998653
No 57
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=96.17 E-value=0.0054 Score=46.01 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=47.8
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
++++.+||..++.++|..+|...-.|. +..... .|. .+.|.|.|.+.++|..|.+.|+|..-
T Consensus 3 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 68 (83)
T 3md1_A 3 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ-TGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 68 (83)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTT-TCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC-CCCccceEEEEECCHHHHHHHHHHhcCCee
Confidence 467889999999999999997754443 222212 233 78999999999999999999988753
No 58
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=96.10 E-value=0.01 Score=46.71 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=52.0
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCcee---eeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQ 251 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i---~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~q 251 (364)
.++++..||..++.++|..+|...-.| .+...+......++|+|.|.+.++|..|.+.|.|..--+-.|++-
T Consensus 14 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 14 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 368999999999999999998653333 222222211226799999999999999999999976544445543
No 59
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=96.10 E-value=0.0025 Score=48.35 Aligned_cols=62 Identities=18% Similarity=0.325 Sum_probs=47.8
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-ec--cccccCC-CceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRG-DNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~--~~~~~~g-~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
++++.+||..++.++|..+|...-.|. +. ..+...| ..+.|.|.|.+.++|..|.+.|+|..
T Consensus 6 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (88)
T 4a8x_A 6 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ 71 (88)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCe
Confidence 478899999999999999987754553 22 2221123 46799999999999999999999865
No 60
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.10 E-value=0.0051 Score=47.58 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=47.3
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCcee----eeccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTI----EAKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i----~~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++..||..++.++|..+|...-.| .+...+. .|. .++|+|.|.|.++|..|.+.|+|..
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 72 (96)
T 1x5t_A 7 GIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPD-TGNSKGYAFINFASFDASDAAIEAMNGQY 72 (96)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTT-TCSCCSEEEEEBSSHHHHHHHHHTTTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCC-CCCcCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 57889999999999999998775444 2222212 233 6799999999999999999998765
No 61
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.08 E-value=0.0063 Score=51.27 Aligned_cols=71 Identities=20% Similarity=0.246 Sum_probs=55.8
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcce
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 252 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~qk 252 (364)
..+++.+||..++.++|..+|...-.|. +...+ .|. .+.|+|.|.|.++|..|.+.|+|..-.+-.|+|-+
T Consensus 96 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 96 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP--DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred CeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC--CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3589999999999999999987644453 22222 233 78999999999999999999999887776677654
No 62
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.03 E-value=0.01 Score=45.76 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=48.0
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.+++..||..++.++|..+|...-.|. +...+......++|+|.|.+.++|..|.+.|+|..-
T Consensus 7 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (95)
T 2dnz_A 7 GLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL 72 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee
Confidence 578899999999999999998755553 222222112367999999999999999999988543
No 63
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=96.01 E-value=0.0049 Score=47.52 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=45.4
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCc--eee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDF--TIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~--~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++.+||..++.++|..+|...- .|. +...+. .|. .++|.|+|.+.++|..|.+.|+|..
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~-~g~~kG~afV~f~~~~~a~~Ai~~l~g~~ 69 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA-NGQSKGFALVGVGSEASSKKLMDLLPKRE 69 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTT-TCCEEEEEEECC-CHHHHHHHHHHGGGSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCC-CCccCcEEEEEECCHHHHHHHHHHcCCCe
Confidence 578889999999999999987644 332 211222 333 7899999999999999999999864
No 64
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=96.00 E-value=0.007 Score=46.68 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=48.9
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee-ec-cccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE-AK-AVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~-~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
..+++..||..++.++|..+|...-.|. +. ...+..|. .+.|+|.|.+.++|..|.+.|+|..-
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 82 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI 82 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE
Confidence 3689999999999999999998754443 11 11111333 68999999999999999999988653
No 65
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.99 E-value=0.0054 Score=47.23 Aligned_cols=62 Identities=18% Similarity=0.142 Sum_probs=48.0
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+++..||..++.++|..+|...-.|. +...+. .|. .++|+|.|.+.++|..|.+.|+|..
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 81 (95)
T 2cqc_A 16 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ-SRRSRGFAFVYFENVDDAKEAKERANGME 81 (95)
T ss_dssp GCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSS-SSSEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC-CCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 3689999999999999999997754443 222222 233 6899999999999999999998754
No 66
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.99 E-value=0.0064 Score=47.27 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=48.0
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-ec-cccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK-AVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~-~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++..||..++.++|..+|...-.|. +. ...+..|. .+.|+|+|.+.++|..|.+.|+|..
T Consensus 17 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 81 (98)
T 2cqp_A 17 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP 81 (98)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCe
Confidence 588999999999999999998754442 11 11111333 6899999999999999999998864
No 67
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=95.97 E-value=0.0053 Score=46.49 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=47.5
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++.+||..++.++|..+|...-.|. +...+. .|. .+.|+|.|.|.++|..|.+.|+|..
T Consensus 8 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 72 (87)
T 3bs9_A 8 HVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMA-TGKSKGYGFVSFFNKWDAENAIQQMGGQW 72 (87)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 588999999999999999987644443 222222 233 7899999999999999999999854
No 68
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.96 E-value=0.0059 Score=46.92 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=46.3
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++.+||..++.++|..+|... .|. +.-.....|. .+.|+|+|.+.++|..|.+ ++|..
T Consensus 12 ~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~ 73 (91)
T 2dgw_A 12 TVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREY 73 (91)
T ss_dssp EEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEE
T ss_pred EEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCce
Confidence 58899999999999999999875 442 2211111333 7899999999999999999 88754
No 69
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.93 E-value=0.0054 Score=47.77 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=48.0
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.++++..||..++.++|..+|...-.|.-.....+ .++|+|.|.+.++|..|.+.|+|..-
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~ 78 (97)
T 1why_A 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPL 78 (97)
T ss_dssp SCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 36899999999999999999987555542222222 35999999999999999999988653
No 70
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.92 E-value=0.0073 Score=47.21 Aligned_cols=60 Identities=22% Similarity=0.363 Sum_probs=47.9
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++..||..++.++|..+|...-.|. +...+ .|. .++|+|.|.+.++|..|.+.|+|..
T Consensus 19 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 82 (100)
T 2do4_A 19 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR--AGKPKGLAYVEYENESQASQAVMKMDGMT 82 (100)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC--CCCEEeEEEEEECCHHHHHHHHHHhCCCE
Confidence 589999999999999999998755553 22222 233 6899999999999999999998744
No 71
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=95.91 E-value=0.0062 Score=47.37 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=47.3
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-ec--cccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~--~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++.+||..++.++|..+|...-.|. +. ..+......++|+|.|.|.++|..|.+.|+|..
T Consensus 4 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 68 (96)
T 2x1f_A 4 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQ 68 (96)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe
Confidence 477889999999999999998755553 22 222211227799999999999999999998854
No 72
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.90 E-value=0.0081 Score=48.00 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=48.9
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---------eccc-cccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---------AKAV-KRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---------~~~~-~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+++..||..++.++|..+|...-.|. +.-. .+..|. .++|+|.|.|.++|..|.+.|+|..
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 16 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3689999999999999999998755554 2211 111233 6799999999999999999998865
No 73
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=95.90 E-value=0.0082 Score=46.92 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=48.5
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceeee---------c--cccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIEA---------K--AVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~~---------~--~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.+++.+||..++.++|..+|...-.|.. . ..+. .|. .++|+|.|.+.++|..|.+.|+|..-
T Consensus 15 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~-~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 15 TIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE-TGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp EEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTT-TCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 5889999999999999999987544432 1 1122 233 78999999999999999999998743
No 74
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=95.87 E-value=0.0036 Score=48.53 Aligned_cols=60 Identities=20% Similarity=0.367 Sum_probs=47.8
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+++..||..++.++|..+|...-.|... .. .|. .++|+|.|.+.++|..|.+.|.|..
T Consensus 17 ~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 77 (96)
T 1fjc_A 17 RTLLAKNLSFNITEDELKEVFEDALEIRLV--SQ-DGKSKGIAYIEFKSEADAEKNLEEKQGAE 77 (96)
T ss_dssp GEEEEESCCSSCCHHHHHHHHCSEEEECCE--EE-TTEEEEEEEEEESSHHHHHHHHHHTTEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CC-CCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 469999999999999999999874444332 22 233 6799999999999999999998743
No 75
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=95.85 E-value=0.0058 Score=46.06 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=46.1
Q ss_pred hhhcCCCCCCC------CHHHhcccCCCCceee-eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKV------PSEELHGVIPGDFTIE-AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l------~~eel~~~~~~~~~i~-~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.+++.+||..+ +.++|..+|...-.|. +.-.+. .|. .++|.|+|.+.++|..|.+.|+|..-
T Consensus 3 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 72 (81)
T 2krb_A 3 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEE-DGKTKGYIFLEYASPAHAVDAVKNADGYKL 72 (81)
T ss_dssp EEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCB-TTBCCCEEEEEESSHHHHHHHHTTSSSCCC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCC-CCcEeEEEEEEECCHHHHHHHHHHhcCccc
Confidence 46788899988 5588998887755553 222222 233 67999999999999999999988653
No 76
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.84 E-value=0.011 Score=46.21 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=47.2
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCcee---eeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i---~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++..||..++.++|..+|...-.| .+...+......++|+|.|.+.++|..|.+.|+|..
T Consensus 14 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 78 (102)
T 1x5s_A 14 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 78 (102)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 58899999999999999888653333 232222211236799999999999999999999865
No 77
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.82 E-value=0.0073 Score=47.02 Aligned_cols=62 Identities=21% Similarity=0.310 Sum_probs=47.5
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-ec--cccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~--~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++..||..++.++|..+|...-.|. +. ..+......++|+|+|.+.++|..|.+.|+|..
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 74 (99)
T 1whw_A 10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQV 74 (99)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCE
Confidence 588999999999999999997755553 22 222111226799999999999999999998754
No 78
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=95.80 E-value=0.0063 Score=48.81 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=48.2
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.+++.+||..++.++|..+|...-.|. +.-...+ ...++|+|.|.+.++|..|.+.|+|..-
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~ 72 (115)
T 3lqv_A 10 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP-ETRGTAYVVYEDIFDAKNAVDHLSGFNV 72 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST-TTTTCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC-CCCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 588999999999999999997654553 2222222 2367999999999999999999998653
No 79
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=95.79 E-value=0.0058 Score=47.17 Aligned_cols=62 Identities=15% Similarity=0.196 Sum_probs=48.6
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+++..||..++.++|..+|...-.|. +...+. ....+.|+|.|.+.++|..|.+.|+|..
T Consensus 17 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (95)
T 2ywk_A 17 RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIR 81 (95)
T ss_dssp GEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 4699999999999999999997644443 222222 1237899999999999999999998865
No 80
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.79 E-value=0.0074 Score=47.25 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=47.4
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-ec--cccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~--~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++..||..++.++|..+|...-.|. +. ..+......++|+|.|.+.++|..|.+.|+|..
T Consensus 14 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 78 (102)
T 2cqb_A 14 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 78 (102)
T ss_dssp CEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEE
T ss_pred EEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 588999999999999999998754443 22 221211236799999999999999999997743
No 81
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.78 E-value=0.0054 Score=47.79 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=47.8
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCcee----eeccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTI----EAKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i----~~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.++++..||..++.++|..+|...-.| .+...+. .|. .+.|+|.|.+.++|..|.+.|+|..-
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (99)
T 2div_A 10 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRL-TGIPAGYCFVEFADLATAEKCLHKINGKPL 77 (99)
T ss_dssp SEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSS-SCCEEEEEEEECSCHHHHHHHHHTTTTSEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCC-CCCcCCEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 358999999999999999888653332 2322222 233 67899999999999999999998654
No 82
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.77 E-value=0.007 Score=47.67 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=48.5
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee-ec--cccccCC-CceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRG-DNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~--~~~~~~g-~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.++++..||..++.++|..+|...-.|. +. ..+. .| ..++|+|+|.+.++|..|.+.|+|..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (105)
T 1x5u_A 16 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRV-TGQHQGYGFVEFLSEEDADYAIKIMDMIK 81 (105)
T ss_dssp TEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSS-SCSBCSCEEEEESSHHHHHHHHHHSSSCB
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCcCCcEEEEEECCHHHHHHHHHHhCCCe
Confidence 3699999999999999999997755553 22 2221 23 36799999999999999999999855
No 83
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=95.76 E-value=0.0096 Score=47.95 Aligned_cols=63 Identities=19% Similarity=0.257 Sum_probs=48.9
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+++.+||..++.++|..+|...-.|. +...+......++|+|+|.+.++|..|.+.|+|..
T Consensus 41 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 106 (118)
T 2khc_A 41 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQ 106 (118)
T ss_dssp EEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 3689999999999999999998755553 22222212237899999999999999999998854
No 84
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.76 E-value=0.0089 Score=47.12 Aligned_cols=63 Identities=16% Similarity=0.286 Sum_probs=48.3
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee-ec--cccccCCC-ceeEEEEeCCHHHHHHHHHhh-cCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGD-NYAAFAIFSSPQEANQAFENV-KGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~--~~~~~~g~-~~~~~~~f~s~~~~~~af~~l-~g~~ 242 (364)
..+++..||..++.++|..+|...-.|. +. ...+..|. .++|+|.|.+.++|..|.+.| .|..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 83 (107)
T 2cph_A 16 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH 83 (107)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB
T ss_pred CEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe
Confidence 3689999999999999999997755553 22 22111233 679999999999999999999 7655
No 85
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.76 E-value=0.0062 Score=47.89 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=48.9
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee-ec--cccccCC-CceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRG-DNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~--~~~~~~g-~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.++++..||..++.++|..+|...-.|. +. ..+. .| ..++|+|.|.+.++|..|.+.|+|..
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (103)
T 2dnm_A 14 ITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPH-TKAPRGFAFVRFHDRRDAQDAEAAMDGAE 79 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSS-SCSBCSCEEEEESSSSHHHHHHHHHSSCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCC-CCCCCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 3689999999999999999998765554 22 1122 22 36799999999999999999999865
No 86
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.74 E-value=0.0044 Score=48.78 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=47.5
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+++..||..++.++|..+|...-.|. +...+. +..++|+|.|.+.++|..|.+.|+|..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~ 79 (103)
T 2cqi_A 16 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRK 79 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCC
Confidence 3689999999999999999986543442 222222 246799999999999999999998764
No 87
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.74 E-value=0.01 Score=47.34 Aligned_cols=60 Identities=22% Similarity=0.185 Sum_probs=48.2
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
++++..||..++.++|..+|...-.|. +...+ .|. .++|+|+|.+.++|..|.+.|+|..
T Consensus 17 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 80 (114)
T 2do0_A 17 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK--DGKSRGIGTVTFEQSIEAVQAISMFNGQL 80 (114)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT--TCSEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 689999999999999999998755553 22222 233 7899999999999999999998754
No 88
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.73 E-value=0.0053 Score=49.30 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=48.4
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.++++.+||..++.++|..+|...-.|. +...+ .+..++|+|.|.+.++|..|.+.|+|..
T Consensus 30 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~ 93 (109)
T 2err_A 30 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTV 93 (109)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCE
T ss_pred CEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCE
Confidence 3589999999999999999997654442 22222 2357899999999999999999998865
No 89
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.71 E-value=0.0069 Score=47.08 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=47.4
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---ecccc--ccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVK--RIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~--~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++..||..++.++|..+|...-.|. +...+ +|.|. .++|+|.|.+.++|..|.+.|+|..
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~ 74 (98)
T 2cpf_A 7 GLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT 74 (98)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCe
Confidence 588899999999999999997654453 21111 12223 7899999999999999999998864
No 90
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=95.70 E-value=0.014 Score=48.62 Aligned_cols=64 Identities=19% Similarity=0.147 Sum_probs=48.9
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
..+++.+||..++.++|..+|...-.|. +...+......++|+|+|.+.++|..|.+.|+|..-
T Consensus 47 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i 113 (129)
T 2kxn_B 47 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 113 (129)
T ss_dssp SCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3589999999999999999998755553 222222112367999999999999999999998543
No 91
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=95.70 E-value=0.0058 Score=46.08 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=47.8
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-ecc-ccccCC-CceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKA-VKRIRG-DNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~-~~~~~g-~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.+++.+||..++.++|..+|...-.|. +.- ..+..| ..+.|.|.|.+.++|..|.+.|+|..-
T Consensus 9 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 74 (85)
T 3mdf_A 9 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 74 (85)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 588999999999999999987644443 221 111123 267999999999999999999998653
No 92
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.70 E-value=0.0092 Score=46.24 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=45.6
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
++++..||..++.++|..+|...-.|.-....+..|. +|+|.|.+.++|..|.+ |+|..
T Consensus 10 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~--~afV~f~~~~~a~~ai~-l~g~~ 68 (94)
T 2e5g_A 10 SVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV--FAIVEMGDVGAREAVLS-QSQHS 68 (94)
T ss_dssp EEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC--EEEEEESSHHHHHHHHT-CSCCE
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc--EEEEEECCHHHHHHHHh-cCCeE
Confidence 5889999999999999999987555542222222343 99999999999999999 87743
No 93
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=95.68 E-value=0.0089 Score=48.03 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=48.7
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee-eccc-cccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE-AKAV-KRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~-~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.++++.+||..++.++|..+|...-.|. +.-. .+..|. .++|+|.|.+.++|..|.+.|+|..
T Consensus 27 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~ 92 (108)
T 2jrs_A 27 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 92 (108)
T ss_dssp EEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 3689999999999999999998755553 2211 111233 7899999999999999999999854
No 94
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=95.68 E-value=0.0089 Score=47.13 Aligned_cols=61 Identities=20% Similarity=0.304 Sum_probs=47.9
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++.+||..++.++|..+|...-.|. +...+. .|. .++|+|.|.+.++|..|.+.|.|..
T Consensus 25 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 89 (106)
T 1p27_B 25 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR-TGYLKGYTLVEYETYKEAQAAMEGLNGQD 89 (106)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-TSSEEEEEEEEESCHHHHHHHHHHHTTCB
T ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCC-CCceeeEEEEEECCHHHHHHHHHHhcCCE
Confidence 589999999999999999997654443 222222 233 7899999999999999999999864
No 95
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=95.68 E-value=0.0074 Score=46.99 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=43.4
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCc-eee-ec--cccccCCCceeEEEEeCCHHHHHHHHHhhcC
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDF-TIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKG 240 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~-~i~-~~--~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g 240 (364)
.+++.+||..++.++|..+|...- .|. +. ..+......++|.|.|.|.++|..|.+.+.+
T Consensus 3 ~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~ 66 (91)
T 2lxi_A 3 IVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQH 66 (91)
T ss_dssp EEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCC
Confidence 367889999999999999986422 232 22 1122122368999999999999999987654
No 96
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.67 E-value=0.013 Score=45.68 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=46.3
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCC-CceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRG-DNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g-~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
++++..||..++.++|..+|...-.|. +...+. .| ..++|+|.|.+.++|..|.+ +.|..
T Consensus 12 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~-~~~~~ 75 (99)
T 2dgs_A 12 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAE-KQRPRGFGFITFEDEQSVDQAVN-MHFHD 75 (99)
T ss_dssp EEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTT-TCSCCSEEEEEESSHHHHHHHHH-HCCCB
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-CCCCCceEEEEECCHHHHHHHHH-hCCCE
Confidence 588999999999999999998755553 222222 23 36799999999999999998 86653
No 97
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=95.63 E-value=0.0096 Score=43.91 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=43.5
Q ss_pred hhcCCCCCCCCHHHhcccCCCCceee-ec--cccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 182 LFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 182 l~~~~iP~~l~~eel~~~~~~~~~i~-~~--~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
+++.+||+.++.++|..+|...-.|. +. ..+......++|.|.|.|.++|..|.+ +.|..
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~ 64 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHE 64 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCC
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCE
Confidence 56789999999999999987654442 22 222111236899999999999999987 65543
No 98
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.59 E-value=0.0087 Score=46.75 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=47.5
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.++++..||..++.++|..+|...-.|. +.-.+. .++|.|+|.+.++|..|.+.|+|..-
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~ 76 (99)
T 2cpj_A 16 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPL 76 (99)
T ss_dssp TEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCB
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3689999999999999999998754443 211111 35999999999999999999998763
No 99
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.56 E-value=0.02 Score=45.38 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=45.8
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee--eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcC
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE--AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKG 240 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~--~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g 240 (364)
.++++..||..++.++|..+|...-.|. +.-.....|. .++|+|+|.+.++|..|.+. .|
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~ 78 (104)
T 1wg5_A 16 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HK 78 (104)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Cc
Confidence 3689999999999999999998865543 2211111233 67999999999999999987 54
No 100
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=95.56 E-value=0.011 Score=46.78 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=48.7
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.+++..||..++.++|..+|...-.|. +...+ .|. .++|+|.|.+.++|..|.+.|.|..-
T Consensus 31 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 95 (107)
T 3ulh_A 31 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR--SGRSLGTADVHFERKADALKAMKQYNGVPL 95 (107)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 589999999999999999997754553 22222 344 78999999999999999999998653
No 101
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=95.55 E-value=0.009 Score=48.62 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=48.1
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCcee---eeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i---~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
++++.+||..++.++|..+|...-.| .+...+. ....++|+|+|.|.++|..|.+.|+|..-
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~F~~~~~A~~Ai~~l~g~~~ 73 (116)
T 2fy1_A 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRT-SKSRGFAFITFENPADAKNAAKDMNGKSL 73 (116)
T ss_dssp EEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTT-TTCCCEEEEECSSHHHHHHHHHHCSSCBC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 58899999999999999998764444 2322222 22368999999999999999999988653
No 102
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=95.50 E-value=0.015 Score=47.16 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=48.8
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-ec---cccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK---AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~---~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.+++..||..++.++|..+|...-.|. ++ .... ....+++.|+|.+.++|..|.+.|+|..-
T Consensus 8 ~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t-g~~rG~aFV~f~~~~~A~~Ai~~lng~~~ 73 (110)
T 3s8s_A 8 EVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRT-RKHLGLARVLFTSTRGAKETVKNLHLTSV 73 (110)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTT-CCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCC-CceeeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 588999999999999999998755553 22 1222 12378999999999999999999998653
No 103
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.48 E-value=0.011 Score=43.61 Aligned_cols=59 Identities=8% Similarity=0.098 Sum_probs=44.4
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCcee---eeccccccCCCceeEEEEeCCHHHHHHHHHhhc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVK 239 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i---~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~ 239 (364)
++++.+||..++.++|..+|...-.| .+...+......+.|.|.|.|.++|..|.+.+.
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 46788999999999999998764444 222222212236799999999999999999876
No 104
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=95.48 E-value=0.012 Score=44.64 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=47.9
Q ss_pred HHHhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 178 ERARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 178 ~~~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
...++++.+||..++.++|..+|...-.|. +...+......+.|+|.|.+.++|..|. .+.|..
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~ 71 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESL 71 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCE
Confidence 345699999999999999999998644443 2222211123789999999999999999 888754
No 105
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=95.43 E-value=0.011 Score=46.97 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=47.8
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-eccc-cccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAV-KRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~-~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++.+||..++.++|..+|...-.|. +.-. .+..|. .++|+|.|.+.++|..|.+.|.|..
T Consensus 28 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 92 (110)
T 1oo0_B 28 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE 92 (110)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE
Confidence 589999999999999999997654453 2211 111233 6799999999999999999998854
No 106
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.43 E-value=0.0092 Score=46.79 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=49.4
Q ss_pred HHHhhhcCCCCCCCCHHHhcccCCCCcee---eeccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 178 ERARLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 178 ~~~~l~~~~iP~~l~~eel~~~~~~~~~i---~~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
....+++.+||..++.++|..+|...-.| .+...+. .|. .++|+|.|.+.++|..|.+.|.|..-
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 75 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE-TGKPKGYGFCEYQDQETALSAMRNLNGREF 75 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETT-TTEEEEEEEEECSCHHHHHHHHHHSSSBSC
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCC-CCccceEEEEEECCHHHHHHHHHHhCCCee
Confidence 34569999999999999999998764444 2222222 233 78999999999999999999988553
No 107
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.41 E-value=0.0099 Score=46.69 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=47.6
Q ss_pred hhhcCCCCCCCCHHHhcccCCC-Cceee---eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPG-DFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~-~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
++++..||..++.++|..+|.. .-.|. +...+.| ...++|+|.|.|.++|..|.+.|+|..
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g-~~~g~afV~f~~~~~a~~A~~~l~g~~ 75 (104)
T 2dhg_A 11 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTG-VSKGYGFVKFTDELEQKRALTECQGAV 75 (104)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTC-CEEEEEEEEESCHHHHHHHHHHTTTCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCC-CccceEEEEECCHHHHHHHHHHccCCc
Confidence 5889999999999999998876 44442 2222221 237899999999999999999999866
No 108
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=95.40 E-value=0.011 Score=47.34 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=48.1
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+++..||..++.++|..+|...-.|. +...+. .|. .++|+|+|.+.++|..|++.|+|..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 81 (115)
T 2dgo_A 16 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA-TGKSKGYGFVSFFNKWDAENAIQQMGGQW 81 (115)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHTTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-CCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 3589999999999999999998644443 222222 233 7899999999999999999998854
No 109
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.37 E-value=0.023 Score=46.14 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=46.4
Q ss_pred HHHhhhcCCCCCCCCHHHhcccCCCCceee-ec--cccccCCCceeEEEEeCCHHHHHHHHHhhcCC
Q 017922 178 ERARLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 241 (364)
Q Consensus 178 ~~~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~--~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~ 241 (364)
....+++.+||..++.++|..+|... .|. +. ..+.| ...+.++|+|.+.++|..|. .+.|.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g-~~~G~afV~F~~~~~a~~Al-~~~~~ 78 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVG-RNNGNGLVKFLSPQDTFEAL-KRNRM 78 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTC-CCCSEEEEECSSHHHHHHHH-HTTTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCC-CCCeEEEEEECCHHHHHHHH-hcCCC
Confidence 34579999999999999999999875 442 22 22222 23789999999999999999 56554
No 110
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=95.35 E-value=0.0099 Score=47.74 Aligned_cols=62 Identities=19% Similarity=0.285 Sum_probs=47.8
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCcee---eeccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i---~~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+++..||..++.++|..+|...-.| .+...+. .|. .++|+|.|.+.++|..|.+.|+|..
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 91 (115)
T 2cpz_A 26 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQ-TNLSKCFGFVSYDNPVSAQAAIQSMNGFQ 91 (115)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSS-SCSEEEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCCcCccEEEEECCHHHHHHHHHHcCCCE
Confidence 468999999999999999998764334 2222222 233 6899999999999999999998754
No 111
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=95.33 E-value=0.013 Score=47.74 Aligned_cols=62 Identities=19% Similarity=0.289 Sum_probs=48.8
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-ec--cccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~--~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.+++..||..++.++|..+|...-.|. +. ..+. .|. .++|+|+|.+.++|..|.+.|+|..-
T Consensus 24 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 89 (126)
T 3ex7_B 24 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR-TGYLKGYTLVEYETYKEAQAAMEGLNGQDL 89 (126)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT-TSSBCSCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHhCCCee
Confidence 599999999999999999997755553 22 2221 233 67999999999999999999998653
No 112
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.33 E-value=0.0088 Score=47.74 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=46.6
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.++++..||..++.++|..+|...-.|.-..... . ++|+|+|.+.++|..|.+.|+|..-
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~--~--g~afV~f~~~~~a~~Ai~~l~g~~~ 75 (108)
T 1x4c_A 16 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR--D--GTGVVEFVRKEDMTYAVRKLDNTKF 75 (108)
T ss_dssp CEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET--T--TEEEEEESSHHHHHHHHHHSSSEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec--C--CEEEEEECCHHHHHHHHHHHCcCCc
Confidence 3689999999999999999997644443111111 1 6999999999999999999988654
No 113
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.30 E-value=0.014 Score=47.11 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=49.6
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcce
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 252 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~qk 252 (364)
.+++..||..++.++|..+|...-.|.-....+ ..++|+|+|.+.++|..|++.|+|..- .|++-+
T Consensus 12 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l~ 77 (111)
T 1whx_A 12 VILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKF---HHVPLY 77 (111)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBS---SSSBCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEE---CCeEEE
Confidence 588999999999999999997755553211112 224799999999999999999998753 255543
No 114
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.30 E-value=0.012 Score=44.45 Aligned_cols=60 Identities=18% Similarity=0.171 Sum_probs=45.5
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhh-cCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENV-KGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l-~g~~ 242 (364)
..+++.+||..++.++|..+|...-.|.-....+ ..++|.|.|.+.++|..|.+.| +|..
T Consensus 13 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~ 73 (85)
T 2ytc_A 13 TTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLI 73 (85)
T ss_dssp CCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCE
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCee
Confidence 3588999999999999999987654453211111 1358999999999999999998 6543
No 115
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=95.29 E-value=0.012 Score=45.20 Aligned_cols=58 Identities=12% Similarity=0.240 Sum_probs=45.3
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
++++.+||..++.++|..+|... .|. ..+-. ...+.+.|+|.+.++|..|.+.|+|..
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~-~v~--~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~ 64 (88)
T 1wg1_A 7 GILVKNLPQDSNCQEVHDLLKDY-DLK--YCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYS 64 (88)
T ss_dssp CEEEESCCSSCCHHHHHHHTCSS-CCC--CEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEE
T ss_pred EEEEeCCCCCCCHHHHHHHHhhC-CeE--EEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCe
Confidence 57889999999999999999875 442 11100 123589999999999999999998754
No 116
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.28 E-value=0.018 Score=45.90 Aligned_cols=66 Identities=11% Similarity=0.102 Sum_probs=47.4
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceeeeccc-cccCCC-ceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAV-KRIRGD-NYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQ 251 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~-~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~q 251 (364)
.+++..||..++.++|..+|...-.+.+.-. .+ .|. .++|+|+|.+.++|..|.+ +.+. .-.||+-
T Consensus 17 ~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~---~~~gr~i 84 (102)
T 1wez_A 17 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKA---NMQHRYV 84 (102)
T ss_dssp EEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSC---CSSSSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCC---eECCcEE
Confidence 5889999999999999999986443332211 12 333 7899999999999999994 5543 3345543
No 117
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.27 E-value=0.024 Score=44.54 Aligned_cols=61 Identities=10% Similarity=0.222 Sum_probs=46.3
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee-eccc-cccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE-AKAV-KRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~-~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+++..||..++.++|..+|... .|. +.-. .+..|. .+.|+|.|.+.++|..|. .|+|..
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~-gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~ 79 (103)
T 2dng_A 16 YTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGAL 79 (103)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTS-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhC-CceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCe
Confidence 368999999999999999999886 343 2211 111233 679999999999999999 887743
No 118
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.22 E-value=0.014 Score=44.70 Aligned_cols=57 Identities=14% Similarity=0.262 Sum_probs=45.7
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
++++..||..++.++|..+|...-.|.-.... .++|+|.|.+.++|..|.+.|+|..
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~ 66 (90)
T 2dnq_A 10 KLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYK 66 (90)
T ss_dssp EEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCB
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCc
Confidence 58899999999999999999875555321111 2489999999999999999998854
No 119
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.21 E-value=0.019 Score=46.25 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=46.5
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceeeeccc-cccC---CC-ceeEEEEeCCHHHHHHHHHhhc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIEAKAV-KRIR---GD-NYAAFAIFSSPQEANQAFENVK 239 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~-~~~~---g~-~~~~~~~f~s~~~~~~af~~l~ 239 (364)
.++++..||..++.++|..+|...-.|.+.-. .... |. .++|.|+|.+.++|..|.+.+.
T Consensus 9 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 9 RKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp CCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 35889999999999999999987655543222 1111 33 7899999999999999999884
No 120
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.20 E-value=0.0067 Score=47.35 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=46.7
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.++++.+||..++.++|..+|...-.|.+.-. .+ ...++|+|+|.+.++|..|.+.|+|..
T Consensus 20 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~-~~-~~~g~afV~f~~~~~a~~A~~~l~g~~ 80 (97)
T 2e5j_A 20 ADVYVGNLPRDARVSDLKRALRELGSVPLRLT-WQ-GPRRRAFLHYPDSAAAQQAVSCLQGLR 80 (97)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCSEEE-EE-TTTTEEEEECSSHHHHHHHHHHHTTCC
T ss_pred CEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEE-cC-CCCcEEEEEECCHHHHHHHHHHhCCCE
Confidence 36899999999999999999876444431111 11 224589999999999999999998865
No 121
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.20 E-value=0.026 Score=44.42 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=46.5
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee-eccc-cccC-CC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE-AKAV-KRIR-GD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~-~~~~-g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+++..||..++.++|..+|...- |. +.-. .+.. |. .++|+|.|.+.++|..|. .|+|..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~ 80 (104)
T 1wi8_A 16 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES 80 (104)
T ss_dssp EEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCE
Confidence 3689999999999999999998754 43 2211 1111 33 679999999999999999 888754
No 122
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.19 E-value=0.011 Score=45.53 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=45.9
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.++++..||..++.++|..+|...-.|.-.... +| +|.|.|.+.++|..|.+.|+|..
T Consensus 11 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~---~afV~f~~~~~a~~A~~~l~g~~ 68 (92)
T 2dgt_A 11 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KD---YAFVHMERAEDAVEAIRGLDNTE 68 (92)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SS---EEEEEESCHHHHHHHHHHHTTEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CC---EEEEEECCHHHHHHHHHHhCCCe
Confidence 358899999999999999999775444321112 23 89999999999999999998764
No 123
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.18 E-value=0.017 Score=46.31 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=48.0
Q ss_pred hhhcCCCCCCCCHHHhc---ccCCCCceee---eccccc-c--CCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELH---GVIPGDFTIE---AKAVKR-I--RGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~---~~~~~~~~i~---~~~~~~-~--~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
++++..||+.++.++|. .+|...-.|. +...+. + +...+.|+|+|.+.++|..|.+.|+|..
T Consensus 17 ~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 17 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 87 (111)
T ss_dssp CEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE
Confidence 58899999999999998 8998755553 222211 1 1235899999999999999999998865
No 124
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=95.18 E-value=0.023 Score=48.14 Aligned_cols=61 Identities=18% Similarity=0.308 Sum_probs=49.6
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+++.+||..++.++|..+|..--.|... ... ....+.|+|.|.+.++|..|.+.|.|..
T Consensus 100 ~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 1fje_B 100 RTLLAKNLSFNITEDELKEVFEDALEIRLV-SQD-GKSKGIAYIEFKSEADAEKNLEEKQGAE 160 (175)
T ss_dssp GEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSS-SSCCSEEEEECSSHHHHHHHHHHHTEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCC-CCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 469999999999999999999986566554 222 1236799999999999999999998854
No 125
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=95.18 E-value=0.02 Score=43.66 Aligned_cols=68 Identities=9% Similarity=0.152 Sum_probs=48.7
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCcee---eeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcce
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 252 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i---~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~qk 252 (364)
++++.+||..++.++|..+|...-.| .+...+......+.|+|.|.+.+ |..|.+.|+|..- .|++-+
T Consensus 3 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~---~g~~l~ 73 (90)
T 2ki2_A 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF---MGRTIR 73 (90)
T ss_dssp EEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC---SSSSCS
T ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE---CCeEEE
Confidence 46788899999999999998653333 23222221223789999999999 9999999988763 355443
No 126
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=95.16 E-value=0.021 Score=45.47 Aligned_cols=60 Identities=13% Similarity=0.039 Sum_probs=45.3
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCce------eeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFT------IEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~------i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++.+||..++.++|..+|...-. +.+...+.| ...+.|+|+|.+.++|..|.+ +.|..
T Consensus 13 ~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g-~~~G~afV~F~~~~~a~~Al~-~~~~~ 78 (107)
T 2lmi_A 13 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDG-KRRGDALIEMESEQDVQKALE-KHRMY 78 (107)
T ss_dssp EEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTS-TTCSEEEEEBSSHHHHHHHHT-TTTCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCC-CEeeEEEEEECCHHHHHHHHH-hCcce
Confidence 5889999999999999999986333 233222222 236899999999999999999 76543
No 127
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.15 E-value=0.017 Score=45.79 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=45.8
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-ec--cccccCC-CceeEEEEeCCHHHHHHHHHhhc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRG-DNYAAFAIFSSPQEANQAFENVK 239 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~--~~~~~~g-~~~~~~~~f~s~~~~~~af~~l~ 239 (364)
.+++..||..++.++|..+|...-.|. +. ..+. .| ..++|+|.|.+.++|..|.+.++
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 17 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPD-TEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSS-SCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCCCccEEEEEECCHHHHHHHHHHhc
Confidence 589999999999999999997755553 22 1212 22 36799999999999999999998
No 128
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=95.11 E-value=0.023 Score=44.59 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=47.3
Q ss_pred HHhhhcCCCCCCCCHHHhcccCCCCceee-ec--cccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 179 RARLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 179 ~~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~--~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..++++.+||..++.++|..+|...- |. +. ..+...|. .++|+|+|.+.++|..|. .++|..
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~ 84 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES 84 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCE
Confidence 34699999999999999999998855 53 22 12211233 679999999999999999 888765
No 129
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=95.11 E-value=0.014 Score=48.11 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=48.1
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee-ec--cccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~--~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.++++.+||..++.++|..+|...-.|. +. ..+......+.|+|.|.+.++|..|.+.|+|..
T Consensus 64 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 129 (140)
T 2ku7_A 64 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 129 (140)
T ss_dssp CEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEE
T ss_pred cEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCE
Confidence 3689999999999999999997754553 22 221211237899999999999999999998753
No 130
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=95.10 E-value=0.0093 Score=48.39 Aligned_cols=67 Identities=10% Similarity=0.123 Sum_probs=49.7
Q ss_pred HHhhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcce
Q 017922 179 RARLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 252 (364)
Q Consensus 179 ~~~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~qk 252 (364)
..++++..||..++.++|..+|...-.|.-..... . ++|+|+|.+.++|..|.+.|+|..- .|+..|
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~--~--g~afV~f~~~~~a~~Ai~~l~g~~~---~gr~~~ 82 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR--D--GTGVVEFVRKEDMTYAVRKLDNTKF---RSHEGE 82 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT--T--SEEEEEESSHHHHHHHHHHHTTCBC---CCTTSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec--C--CEEEEEECCHHHHHHHHHHhCCCEE---CCcEee
Confidence 34699999999999999999997644443211111 1 6899999999999999999998654 355433
No 131
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=95.10 E-value=0.007 Score=49.59 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=45.4
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCc-eeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDF-TIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~-~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
++++.+||..++.++|..+|...- .|....... +...+++.|+|.+.++|..|.+.|+|..
T Consensus 30 ~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~ 91 (111)
T 2jvr_A 30 RITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIE 91 (111)
T ss_dssp EEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCE
Confidence 689999999999999999986432 232111111 1235699999999999999999998754
No 132
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.07 E-value=0.025 Score=46.12 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=44.9
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCce------eeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCC
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFT------IEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 241 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~------i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~ 241 (364)
.+++..||..++.++|..+|...-. +.+...+.| ...++|+|+|.+.++|..|.+ +.|.
T Consensus 19 ~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g-~~~G~afV~F~~~~~a~~Al~-~~g~ 83 (118)
T 2db1_A 19 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREG-RQSGEAFVELESEDDVKLALK-KDRE 83 (118)
T ss_dssp EEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSS-CEEEEEEEEBSSHHHHHHHGG-GTTE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCC-CCCeEEEEEECCHHHHHHHHh-cCCC
Confidence 5889999999999999999976433 222222221 237899999999999999999 7553
No 133
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.06 E-value=0.015 Score=45.32 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=45.5
Q ss_pred hhhcCCCCCCCCHHHhcccCCCC--ceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGD--FTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~--~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++..||..++.++|..+|... -.|.-. +..+ ++|+|.|.+.++|..|.+.|+|..
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~--~~~~---g~afV~f~~~~~A~~A~~~l~g~~ 75 (99)
T 2cpd_A 17 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--KKIR---DYAFVHFSNREDAVEAMKALNGKV 75 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSTTCEEEE--EECS---SEEEEEESSHHHHHHHHHHHSSEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcceEEE--EEeC---CeEEEEeCCHHHHHHHHHHhCCCE
Confidence 58999999999999999999775 344311 1112 399999999999999999998864
No 134
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=95.04 E-value=0.016 Score=45.06 Aligned_cols=64 Identities=27% Similarity=0.365 Sum_probs=49.3
Q ss_pred hhhcCCCCC-CCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcce
Q 017922 181 RLFLHRIPT-KVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 252 (364)
Q Consensus 181 ~l~~~~iP~-~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~qk 252 (364)
++++..||. .++.++|..+|...-.|.-.... .++|+|+|.+.++|..|.+.|.|..-. |++-+
T Consensus 12 ~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 76 (96)
T 2kvi_A 12 RLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNF---GKKLI 76 (96)
T ss_dssp EEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCB---TTTBC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeC---CcEEE
Confidence 589999998 99999999999875444321111 248999999999999999999987543 55543
No 135
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=95.03 E-value=0.016 Score=46.55 Aligned_cols=58 Identities=28% Similarity=0.373 Sum_probs=46.5
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
++++.+||..++.++|..+|...-.|.-.... .++|.|+|.+.++|..|.+.|+|..-
T Consensus 33 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~ 90 (108)
T 2jvo_A 33 RLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSF 90 (108)
T ss_dssp EEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 58999999999999999999875444311111 35999999999999999999998754
No 136
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.00 E-value=0.0094 Score=46.55 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=46.0
Q ss_pred HhhhcCCCCCCCCHHHhc----ccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELH----GVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~----~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.++++..||..++.++|. .+|...-.|. +...+. + .+.|.|+|.+.++|..|.+.|+|..
T Consensus 10 ~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~--~-rg~afV~f~~~~~A~~Ai~~l~g~~ 76 (96)
T 2dgx_A 10 ADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD--Y-QLKAVVQMENLQDAIGAVNSLHRYK 76 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS--T-TCCEEEEESSHHHHHHHHHHHTTEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC--C-CeEEEEEECCHHHHHHHHHHhCCCE
Confidence 368999999999999998 8886533342 222222 2 5589999999999999999998864
No 137
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=95.00 E-value=0.013 Score=45.91 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=45.5
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++.+||..++.++|..+|...-.|. +.-. + ..++|+|.|.|.++|..|.+.|.|..
T Consensus 29 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~---~~g~afV~f~~~~~A~~Ai~~l~g~~ 87 (101)
T 2la4_A 29 TAYIGNIPHFATEADLIPLFQNFGFILDFKHY-P---EKGCCFIKYDTHEQAAVCIVALANFP 87 (101)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-T---TTTEEEEECSSHHHHHHHHHHHTTCE
T ss_pred EEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-c---CCCEEEEEECCHHHHHHHHHHhCCCe
Confidence 588999999999999999987644442 2111 1 23589999999999999999998754
No 138
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=94.96 E-value=0.017 Score=43.73 Aligned_cols=57 Identities=11% Similarity=0.212 Sum_probs=44.0
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHh
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFEN 237 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~ 237 (364)
.++++.+||..++.++|..+|...-.|. +...+. .|. .++|.|.|.+.++|..|.+.
T Consensus 12 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 12 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN-TGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-TCCEEEEEEEEESSTHHHHHHHHS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCC-CCccccEEEEEECCHHHHHHHHHh
Confidence 3689999999999999999997754553 222222 233 78999999999999999965
No 139
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.96 E-value=0.026 Score=45.22 Aligned_cols=59 Identities=14% Similarity=0.276 Sum_probs=45.2
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHHhhcC
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKG 240 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g 240 (364)
.++++.+||..++.++|..+|...-.|. +...+. ....|+|.|+|.+.+.|..|.+ +.|
T Consensus 12 ~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~ 73 (103)
T 1s79_A 12 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPG 73 (103)
T ss_dssp GCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSC
T ss_pred CEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCC
Confidence 4699999999999999999997754453 222222 2236799999999999999998 654
No 140
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.96 E-value=0.016 Score=47.31 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=46.6
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+++..||..++.++|..+|...-.|. +..... .|. .++|+|+|.+.++|..|.+ +.|..
T Consensus 26 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~g~~ 90 (124)
T 1wel_A 26 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGP-NGKATGEGFVEFRNEADYKAALC-RHKQY 90 (124)
T ss_dssp CEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECT-TSSEEEEEEEEBSSSHHHHHHHT-SCSBC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECC-CCCCCeEEEEEECCHHHHHHHHH-hCCCe
Confidence 3689999999999999999998744442 111112 344 7899999999999999999 86644
No 141
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.95 E-value=0.0087 Score=49.62 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=46.6
Q ss_pred hhhc--CCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFL--HRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~--~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.|++ .+||.+++.++|..+|...-.|+-.-...+ .+++.|.|.+.++|..|++.|+|..-
T Consensus 27 ~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~---rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 27 SLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---KPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp EEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT---CSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred EEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4888 779999999999999976444432211122 35999999999999999999999754
No 142
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.95 E-value=0.027 Score=45.14 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=45.0
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcC
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKG 240 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g 240 (364)
.+++..||..++.++|..+|...-.|.-.-..++ .++|.|+|.+.++|..|.+.+++
T Consensus 17 ~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~ 73 (101)
T 2cq1_A 17 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSA 73 (101)
T ss_dssp EEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhcc
Confidence 5889999999999999999987555531111121 46999999999999999998876
No 143
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.91 E-value=0.024 Score=45.70 Aligned_cols=59 Identities=10% Similarity=0.034 Sum_probs=44.4
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCcee----eeccccccCCCceeEEEEeCCHHHHHHHHHhhcC
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTI----EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKG 240 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i----~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g 240 (364)
..+++..||..++.++|..+|...-.+ .+...+.| ...++|+|+|.+.++|..|.+. .|
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g-~~~G~afV~F~~~~~a~~Al~~-~~ 78 (114)
T 2cpy_A 16 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNG-QGLGQALVQFKNEDDARKSERL-HR 78 (114)
T ss_dssp CEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTS-SCSSCEEEECSSHHHHHHHGGG-CS
T ss_pred cEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCC-CcceEEEEEECCHHHHHHHHHh-CC
Confidence 358999999999999999999875443 22222221 1367999999999999999875 44
No 144
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=94.90 E-value=0.018 Score=46.92 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=47.7
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCcee---eeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i---~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.++++..||..++.++|..+|...-.| .+...+.| ...++|+|.|.+.++|..|.+.|.|..
T Consensus 36 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g-~~~g~afV~f~~~~~A~~Ai~~l~g~~ 100 (124)
T 2kt5_A 36 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSG-RSLGTADVHFERRADALKAMKQYKGVP 100 (124)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSS-SCCSEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCC-CEeeEEEEEECCHHHHHHHHHHcCCCE
Confidence 368999999999999999998764344 23222221 236799999999999999999998853
No 145
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.90 E-value=0.023 Score=45.40 Aligned_cols=64 Identities=13% Similarity=0.223 Sum_probs=48.4
Q ss_pred HHHHhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHHhhcCC
Q 017922 177 TERARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 241 (364)
Q Consensus 177 ~~~~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~ 241 (364)
.....+++..||..++.++|..+|...-.|. +...+......++|+|+|.+.++|..|. .|.|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 89 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQ 89 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCC
Confidence 3455799999999999999999998754553 2222221122679999999999999999 99774
No 146
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.89 E-value=0.02 Score=46.08 Aligned_cols=58 Identities=12% Similarity=0.028 Sum_probs=45.7
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCC
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 241 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~ 241 (364)
.+++..||..++.++|..+|...-.|.-.-.-+. .++|.|+|.+.++|..|++.|++.
T Consensus 17 ~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~ 74 (104)
T 1wex_A 17 VVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADV 74 (104)
T ss_dssp EEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccC
Confidence 5889999999999999999987555532111111 359999999999999999999764
No 147
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=94.89 E-value=0.0059 Score=47.83 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=44.6
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCcee---eeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i---~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
++++..||..++.++|..+|...-.| .+... ..++|.|.|.+.++|..|.+.|+|..
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~ 61 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKV 61 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCe
Confidence 46788999999999999988653333 22111 34599999999999999999999865
No 148
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.86 E-value=0.021 Score=45.88 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=46.5
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHHhhcC
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKG 240 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g 240 (364)
.++++..||..++.++|..+|...-.|. +...+...-..++|+|.|.+.++|..|.+.+.+
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~ 81 (116)
T 2cqd_A 18 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP 81 (116)
T ss_dssp SEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC
Confidence 3689999999999999999997754553 222222112267999999999999999998875
No 149
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.81 E-value=0.011 Score=45.43 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=44.8
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
++++..||..++.++|..+|...-.|.-.... +| +|.|+|.+.++|..|.+.|+|..
T Consensus 11 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~---~afV~f~~~~~a~~A~~~l~g~~ 67 (90)
T 2dnp_A 11 KIFVGNVSAACTSQELRSLFERRGRVIECDVV--KD---YAFVHMEKEADAKAAIAQLNGKE 67 (90)
T ss_dssp CEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SS---CEEEEESCHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CC---EEEEEECCHHHHHHHHHHhCCCE
Confidence 58899999999999999998764344321112 23 89999999999999999998754
No 150
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=94.78 E-value=0.0072 Score=50.40 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=48.0
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++.+||..++.++|..+|...-.|. +...+. .|. .+.|.|.|.|.++|..|.+.|.|..
T Consensus 90 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 154 (167)
T 1fxl_A 90 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV-TGVSRGVGFIRFDKRIEAEEAIKGLNGQK 154 (167)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC-CCCccceEEEEeCCHHHHHHHHHHhcCCc
Confidence 588999999999999999998644443 222221 233 7899999999999999999999874
No 151
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=94.76 E-value=0.029 Score=46.52 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=48.8
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.++..+||..++.++|..+|...-.|. +..... .|. .+.|+|.|.|.++|..|.+.|+|..-
T Consensus 89 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 154 (166)
T 3md3_A 89 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ-TGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 154 (166)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTT-TCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred eEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCC-CCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 588999999999999999997755553 222222 233 77999999999999999999998763
No 152
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=94.75 E-value=0.022 Score=48.25 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=48.4
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCC-CceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRG-DNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g-~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
..+++..||..++.++|..+|...-.|. +...+. .| ..++|+|+|.|.++|..|.+.|+|..-
T Consensus 40 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 106 (156)
T 1h2v_Z 40 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM-KKTACGFCFVEYYSRADAENAMRYINGTRL 106 (156)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHTTTSEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3589999999999999999997644443 222222 23 368999999999999999999987653
No 153
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.75 E-value=0.014 Score=47.72 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=44.7
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCC
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 241 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~ 241 (364)
.+++.+||..++.++|..+|...-.|.-.-.-++ .+++.|+|.+.++|..|.+.+++.
T Consensus 18 ~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~ 75 (105)
T 1sjq_A 18 VIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSV 75 (105)
T ss_dssp EEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccC
Confidence 6899999999999999999865434421111111 359999999999999999998764
No 154
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=94.74 E-value=0.01 Score=47.14 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=47.1
Q ss_pred HhhhcCCCCCCC------CHHHhcccCCCCceee-eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKV------PSEELHGVIPGDFTIE-AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l------~~eel~~~~~~~~~i~-~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.++++.+||..+ +.++|..+|...-.|. +.-.+. .|. .++|.|+|.+.+.|..|.+.|+|..
T Consensus 16 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~-~g~~~G~afV~f~~~~~A~~Ai~~l~g~~ 85 (105)
T 2nlw_A 16 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEE-DGKTKGYIFLEYASPAHAVDAVKNADGYK 85 (105)
T ss_dssp SEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCB-TTBSCCEEEEEECSSSHHHHHHHHCSSEE
T ss_pred CEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCC-CCCeeeEEEEEECCHHHHHHHHHHhCCcc
Confidence 358999999998 5688999987654553 222222 333 6899999999999999999999865
No 155
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=94.72 E-value=0.031 Score=46.85 Aligned_cols=55 Identities=24% Similarity=0.275 Sum_probs=43.7
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccc-cccCCC-ceeEEEEeCCHHHHHHHHHh
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAV-KRIRGD-NYAAFAIFSSPQEANQAFEN 237 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~-~~~~g~-~~~~~~~f~s~~~~~~af~~ 237 (364)
.+++.+||..++.++|..+|... .|. +.-. .+ .|. .++|+|+|.+.++|..|.+.
T Consensus 44 ~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~-~GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 44 FVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDP-EGKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCS-SSSSCSEEEEEESSTTHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECC-CCCCceEEEEEECCHHHHHHHHHH
Confidence 58999999999999999999986 443 2211 12 233 78999999999999999985
No 156
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=94.72 E-value=0.032 Score=46.58 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=48.9
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.+++..||..++.++|..+|...-.|. +...+......+.|.|.|.|.++|..|.+.|+|..-
T Consensus 91 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 156 (168)
T 1b7f_A 91 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP 156 (168)
T ss_dssp EEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe
Confidence 588999999999999999998755553 222221112367999999999999999999999744
No 157
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.69 E-value=0.012 Score=46.97 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=46.7
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCcee-----eeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTI-----EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i-----~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.+++..||..++.++|..+|...-.| .+... . ....++|+|+|.+.++|..|.+.|+|..-
T Consensus 27 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~-g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 92 (115)
T 2cpx_A 27 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-T-GRMRGQAFITFPNKEIAWQALHLVNGYKL 92 (115)
T ss_dssp EEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-C-SSSCSEEEEECSSHHHHHHHHHHSTTCBC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-C-CccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 68999999999999999999653333 22211 2 12257999999999999999999998553
No 158
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=94.69 E-value=0.011 Score=49.11 Aligned_cols=63 Identities=24% Similarity=0.255 Sum_probs=48.2
Q ss_pred HHhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 179 RARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 179 ~~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..++++..||..++.++|..+|...-.|. +...+. .|. .++|+|+|.+.++|..|.+.|.|..
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 108 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE-TRQSRGYGFVKFQSGSSAQQAIAGLNGFN 108 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETT-TTEEEEEEEEEESSHHHHHHHHHHTTTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-CCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 34699999999999999999987643442 222222 233 7899999999999999999998754
No 159
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=94.63 E-value=0.012 Score=46.32 Aligned_cols=57 Identities=23% Similarity=0.288 Sum_probs=44.9
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++..||..++.++|..+|...-.|.-.... +| +|+|.|.+.++|..|.+.|+|..
T Consensus 13 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~---~afV~f~~~~~a~~A~~~l~g~~ 69 (103)
T 2dgu_A 13 VLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KD---YAFIHFDERDGAVKAMEEMNGKD 69 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SS---CEEEEESSHHHHHHHHHHHTTEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CC---EEEEEeCCHHHHHHHHHHHCCCc
Confidence 58899999999999999998764344321111 23 89999999999999999998864
No 160
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.63 E-value=0.0097 Score=45.85 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=43.6
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCce-eeeccccccCCCceeEEEEeCCHHHHHHHHHhhcC
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFT-IEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKG 240 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~-i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g 240 (364)
++++..||..++.++|..+|...-. +...... ..++|+|.|.+.++|..|.+.|+|
T Consensus 10 ~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g 66 (93)
T 2cqh_A 10 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSG 66 (93)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccC
Confidence 5889999999999999998865333 2211111 134899999999999999999998
No 161
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=94.60 E-value=0.025 Score=47.03 Aligned_cols=62 Identities=21% Similarity=0.311 Sum_probs=47.8
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCC-CceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRG-DNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g-~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.+++.+||+.++.++|..+|...-.|. +...+. .| ..+.|.|.|.+.++|..|.+.|+|..-
T Consensus 4 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~-~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 69 (167)
T 1fxl_A 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI-TGQSLGYGFVNYIDPKDAEKAINTLNGLRL 69 (167)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-CCcceeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 478889999999999999997754443 222221 23 368999999999999999999988554
No 162
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=94.59 E-value=0.031 Score=40.95 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=40.8
Q ss_pred hhcCCCCCCCCHHHhcccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHHh
Q 017922 182 LFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFEN 237 (364)
Q Consensus 182 l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~~ 237 (364)
++..+||+.++.++|..+|...-.|. +...+......+.|.|.|.|.++|..|.+.
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh
Confidence 56789999999999999886533332 222222112367999999999999999984
No 163
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=94.52 E-value=0.023 Score=44.57 Aligned_cols=58 Identities=28% Similarity=0.403 Sum_probs=46.1
Q ss_pred HhhhcCCCCC-CCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPT-KVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~-~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.++++.+||. .++.++|..+|...-.|.-.... .++|+|.|.+.++|..|.+.|+|..
T Consensus 23 ~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (97)
T 2xnq_A 23 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEM 81 (97)
T ss_dssp CEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSE
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCE
Confidence 3689999998 99999999999774444321111 3589999999999999999998864
No 164
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=94.49 E-value=0.01 Score=45.91 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=46.2
Q ss_pred hhhcCCCCCCCCHHHhc----ccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELH----GVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~----~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++.+||..++.++|. .+|...-.|. +.-.+.| ...++|.|.|.|.++|..|.+.|+|..
T Consensus 10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~ 75 (97)
T 1nu4_A 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSL-KMRGQAFVIFKEVSSATNALRSMQGFP 75 (97)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHH-HHTTCEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCC-CcCcEEEEEeCCHHHHHHHHHHhCCCE
Confidence 58899999999999998 8887644443 2222221 124689999999999999999999854
No 165
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=94.49 E-value=0.025 Score=48.78 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=48.0
Q ss_pred HHhhhcCCCCCCCCHHHhcccCCCCc--eee-ec--cccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 179 RARLFLHRIPTKVPSEELHGVIPGDF--TIE-AK--AVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 179 ~~~l~~~~iP~~l~~eel~~~~~~~~--~i~-~~--~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..++++..||..++.++|..+|...- .|. ++ ..+. .|. .|+|+|+|.+.++|..|.+.|+|..
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~-tg~skGfaFV~f~~~~~A~~Ai~~lng~~ 123 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRA-NGQSKGYAEVVVASENSVHKLLELLPGKV 123 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTT-TCCEEEEEEEEESCHHHHHHHHHHSTTCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 34699999999999999999996544 332 22 1222 343 7899999999999999999998853
No 166
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=94.44 E-value=0.088 Score=48.34 Aligned_cols=81 Identities=16% Similarity=0.233 Sum_probs=58.1
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcceEEEEecC
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQKLVEFQSN 259 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~qk~v~~~~~ 259 (364)
.+++.+||..++.++|..+|...- |. ++- . ...+.|.|.|.+.++|..|.+.|+|..-. |++.+ +...
T Consensus 24 ~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~---~~~g~afV~f~~~~~A~~A~~~l~~~~~~---g~~i~---v~~~ 92 (284)
T 3smz_A 24 KILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-D---KYKGTAFVTLLNGEQAEAAINAFHQSRLR---ERELS---VQLQ 92 (284)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-E---TTTTEEEEEESSHHHHHHHHHHHTTCEET---TEECE---EEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-e---cCCCEEEEEeCCHHHHHHHHHHcCCCeeC---CeEEE---EEec
Confidence 489999999999999999998754 43 222 1 12358999999999999999999987743 44443 3322
Q ss_pred CCCeEEEEEEeecc
Q 017922 260 AGIIASLYVRKMVC 273 (364)
Q Consensus 260 ~g~~~~~~vrkm~~ 273 (364)
.. ...|||+.+-.
T Consensus 93 ~~-~~~l~v~nlp~ 105 (284)
T 3smz_A 93 PT-DALLCVANLPP 105 (284)
T ss_dssp CC-SCEEEEESCCT
T ss_pred CC-CCEEEEcCCCC
Confidence 22 24678887643
No 167
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=94.34 E-value=0.019 Score=47.75 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=47.9
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
++++.+||+.++.++|..+|...-.|. +...+. ....+.|+|.|.+.++|..|.+.++|..-
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 66 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQI 66 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCcc
Confidence 467888999999999999997644443 222233 23478999999999999999999998764
No 168
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.32 E-value=0.017 Score=45.90 Aligned_cols=59 Identities=17% Similarity=0.149 Sum_probs=45.4
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++..||..++.++|..+|...-.|.-...... .++|+|.|.+.++|..|.+.|.|..
T Consensus 27 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~ 85 (109)
T 1x4g_A 27 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTT 85 (109)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCE
Confidence 5899999999999999999875334431111111 4599999999999999999998854
No 169
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=94.32 E-value=0.024 Score=45.86 Aligned_cols=58 Identities=16% Similarity=0.096 Sum_probs=45.5
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++..||..++.++|..+|...-.|. +.-.+ .+ ++|.|+|.+.++|..|++.++|..
T Consensus 23 ~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-~k---g~AFVef~~~~~A~~Av~~ln~~~ 81 (100)
T 3r27_A 23 VVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-KK---RQALVEFEDVLGACNAVNYAADNQ 81 (100)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-TT---TEEEEEESSHHHHHHHHHHHHHSC
T ss_pred EEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-CC---CEEEEEECCHHHHHHHHHHhcCCC
Confidence 488999999999999999987644443 22112 13 499999999999999999998753
No 170
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=94.25 E-value=0.021 Score=43.13 Aligned_cols=58 Identities=24% Similarity=0.327 Sum_probs=43.8
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCC----c-------eee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGD----F-------TIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~----~-------~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.++++.+||..++.++|..+|... - .|. +.-.+ ..++|.|+|.|.++|..|. .|+|..
T Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~----~kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 7 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----DKNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS----SSSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC----CCcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 358899999999999999998742 1 222 11111 1469999999999999999 998765
No 171
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=94.23 E-value=0.031 Score=45.28 Aligned_cols=62 Identities=11% Similarity=0.159 Sum_probs=47.6
Q ss_pred HHhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 179 RARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 179 ~~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
...+++.+||..++.++|..+|...-.|. +...+. .|. .++|+|+|.+.++|..|. .|+|..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~-~l~g~~ 101 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKF-SGHPKGYAYIEFAERNSVDAAV-AMDETV 101 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECT-TSSCEEEEEEEESSHHHHHHHH-TTTTCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC-CCCcccEEEEEECCHHHHHHHH-hcCCCe
Confidence 44699999999999999999998755553 222222 233 789999999999999999 787754
No 172
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=94.20 E-value=0.016 Score=45.65 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=47.8
Q ss_pred hhhcCCCCC------CCCHHHhcccCCCCceee-eccc-cccCCC-ceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPT------KVPSEELHGVIPGDFTIE-AKAV-KRIRGD-NYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~------~l~~eel~~~~~~~~~i~-~~~~-~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.+++.+||. .++.++|..+|...-.|. +.-+ .+..|. .+.|.|+|.+.++|..|.+.|+|..-
T Consensus 8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~ 79 (100)
T 3ns6_A 8 YIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL 79 (100)
T ss_dssp EEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred EEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc
Confidence 488899999 889999999998755553 2211 121233 67999999999999999999998653
No 173
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.16 E-value=0.031 Score=44.17 Aligned_cols=59 Identities=22% Similarity=0.182 Sum_probs=44.4
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCce-ee-ecc--ccccCC-CceeEEEEeCCHHHHHHHHHhhc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFT-IE-AKA--VKRIRG-DNYAAFAIFSSPQEANQAFENVK 239 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~-i~-~~~--~~~~~g-~~~~~~~~f~s~~~~~~af~~l~ 239 (364)
++++.+||..++.++|..+|...-. |. +.- .....| ..++|+|+|.+.++|..|.+.|+
T Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 10 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred EEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 5889999999999999988865322 32 221 222223 36799999999999999999995
No 174
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=94.15 E-value=0.025 Score=50.31 Aligned_cols=61 Identities=18% Similarity=0.310 Sum_probs=48.2
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-ec-cccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK-AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~-~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
++++..||..++.++|..+|...-.|. +. .... .+..+++.|.|.+.++|..|++.|+|..
T Consensus 105 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~~ 167 (213)
T 4f02_A 105 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGML 167 (213)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred cceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCCCE
Confidence 589999999999999999998754553 21 1112 2357899999999999999999999854
No 175
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=94.14 E-value=0.047 Score=46.16 Aligned_cols=61 Identities=11% Similarity=0.104 Sum_probs=46.4
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCce---e---eeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFT---I---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~---i---~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.++++.+||..++.++|..+|...-. | .+...+.| ...+.|+|+|.|.++|..|.+ +.|..
T Consensus 45 ~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g-~srG~aFV~F~~~e~a~~Al~-~~g~~ 111 (136)
T 2hgl_A 45 FVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREG-RQSGEAFVELGSEDDVKMALK-KDRES 111 (136)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSS-CEEEEEEEECSSHHHHHHHHT-TTEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCC-CCCeEEEEEECCHHHHHHHHh-cCCCE
Confidence 36899999999999999999987443 2 22222221 237899999999999999998 77643
No 176
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=94.13 E-value=0.034 Score=47.74 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=47.8
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++.+||..++.++|..+|...-.|. +...+. .|. .++|+|.|.+.+.|..|.+.|+|..
T Consensus 74 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 138 (165)
T 1rk8_A 74 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR-TGFSKGYALVEYETHKQALAAKEALNGAE 138 (165)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-TSSEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCC-CCcEeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 589999999999999999997654443 222222 233 7899999999999999999998854
No 177
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=94.11 E-value=0.051 Score=47.39 Aligned_cols=61 Identities=11% Similarity=0.210 Sum_probs=48.3
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++..||..++.++|..+|...-.|. +...+. .|. .+.|+|.|.|.++|..|++.|.|..
T Consensus 127 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-~g~~~g~afV~F~~~~~A~~A~~~l~g~~ 191 (216)
T 2qfj_A 127 RIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT-TGKHKGYGFIEYEKAQSSQDAVSSMNLFD 191 (216)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred EEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCC-CCCcCceEEEEecCHHHHHHHHHHccCCE
Confidence 588999999999999999998755553 212222 233 7899999999999999999998865
No 178
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.10 E-value=0.028 Score=46.81 Aligned_cols=57 Identities=12% Similarity=0.113 Sum_probs=45.0
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCC
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 241 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~ 241 (364)
.+++..||..++.++|..+|...-.|. +.-. +. .++|.|+|.+.++|..|.+.+.+.
T Consensus 33 ~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~-~~---kG~AFVeF~~~e~A~~Ai~~l~~~ 90 (119)
T 2ad9_A 33 VIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KG---KNQAFIEMNTEEAANTMVNYYTSV 90 (119)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE-GG---GTEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CC---CCEEEEEECCHHHHHHHHHHhccC
Confidence 589999999999999999987754443 2211 11 359999999999999999988763
No 179
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.08 E-value=0.036 Score=43.56 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=45.7
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCC
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGN 241 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~ 241 (364)
.++++..||..++.++|..+|...-.|. +...+. .|. .++|+|+|.+.++|..|.+. +|.
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~a~~~-~~~ 80 (105)
T 2dh8_A 17 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKT-TNQSRGFGFVKFKDPNCVGTVLAS-RPH 80 (105)
T ss_dssp SEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSS-SCCEEEEEEEEESSTTHHHHHHHH-CSE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-CCCcceEEEEEECCHHHHHHHHHh-CCC
Confidence 3699999999999999999997754553 222222 233 67999999999999999987 543
No 180
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=94.08 E-value=0.025 Score=47.28 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=48.1
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-ecccc-ccCC-CceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVK-RIRG-DNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~-~~~g-~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.+++.+||+.++.++|..+|...-.|. +.-.+ +..| ..+.|.|.|.+.++|..|.+.++|..-
T Consensus 5 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 70 (168)
T 1b7f_A 5 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV 70 (168)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe
Confidence 478899999999999999997754553 32211 1123 267999999999999999999988654
No 181
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.06 E-value=0.031 Score=43.79 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=43.3
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHh
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFEN 237 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~ 237 (364)
.+++..||..++.++|..+|...-.|. +...+. .|. .++|+|.|.+.++|..|.++
T Consensus 17 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 17 DLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK-TGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSS-SCSEEEEEEEEESSHHHHHHHHHS
T ss_pred EEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCC-CCCccceEEEEECCHHHHHHHHHc
Confidence 588999999999999999997644443 222222 233 78999999999999999984
No 182
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=94.00 E-value=0.026 Score=46.57 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=46.4
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCcee-----eeccccccCC-CceeEEEEeCCHHHHHHHHHhhcCC
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTI-----EAKAVKRIRG-DNYAAFAIFSSPQEANQAFENVKGN 241 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i-----~~~~~~~~~g-~~~~~~~~f~s~~~~~~af~~l~g~ 241 (364)
.++++..||..++.++|..+|...-.| .+...+. .| ..++|+|+|.+. +|..|.+.|+|.
T Consensus 24 ~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~-tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 24 DTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQ-TQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSS-SSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCC-CCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 369999999999999999999764344 2222221 23 268999999999 999999999986
No 183
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=93.99 E-value=0.0099 Score=46.53 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=45.8
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.++++..||..++.++|..+|...-.+. +.....| ...++|+|.|.+.++|..|.+ ++|..-
T Consensus 18 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g-~~~g~afV~f~~~~~a~~A~~-l~g~~~ 82 (101)
T 1fj7_A 18 FNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTG-TNRKFGYVDFESAEDLEKALE-LTGLKV 82 (101)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEE-TTTTEEEEEESSHHHHHHHHH-GGGCCB
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCC-CcCcEEEEEECCHHHHHHHHh-cCCcEE
Confidence 3689999999999999999886533321 1111221 225689999999999999998 988654
No 184
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.98 E-value=0.027 Score=46.90 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=44.4
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCce-------eeeccccccCCC-ceeEEEEeCCHHHHHHHHHhhcC
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFT-------IEAKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKG 240 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~-------i~~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g 240 (364)
.+++.+||..++.++|..+|..... |.+...+. |. .++|+|+|.+.++|..|.+. .+
T Consensus 25 ~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~--gr~~G~aFV~F~~~~~A~~Al~~-~~ 89 (123)
T 2dha_A 25 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPD--GRPTGDAFVLFACEEYAQNALRK-HK 89 (123)
T ss_dssp EEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTT--SCEEEEEEECCSSHHHHHHHHTT-TT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCC--CCEeeEEEEEECCHHHHHHHHHh-CC
Confidence 5889999999999999999976533 33322223 33 78999999999999999975 44
No 185
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=93.98 E-value=0.044 Score=46.40 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=48.8
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCccCC
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKD 245 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d 245 (364)
++++..||..++.++|..+|...-.|. +.-.++ ...+.|.|+|.++++|..|.+.|+|..--+
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 467899999999999999998866653 322222 122459999999999999999999987543
No 186
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.91 E-value=0.034 Score=44.82 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=45.1
Q ss_pred hhhcCCCCC-CCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCC
Q 017922 181 RLFLHRIPT-KVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 241 (364)
Q Consensus 181 ~l~~~~iP~-~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~ 241 (364)
.+++..||. .++.++|..+|...-.|. +.-.+ .+ ++|.|+|.+.++|..|.+.|+|.
T Consensus 17 ~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~-~k---g~aFVef~~~~~A~~Ai~~l~~~ 75 (102)
T 1x4d_A 17 VVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-KI---NEAFIEMATTEDAQAAVDYYTTT 75 (102)
T ss_dssp EEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS-SS---SCEEEEESSHHHHHHHHHHHHHS
T ss_pred EEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc-CC---CEEEEEECCHHHHHHHHHHHcCC
Confidence 588999999 999999999998644443 22111 12 47999999999999999999875
No 187
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=93.91 E-value=0.054 Score=43.35 Aligned_cols=60 Identities=8% Similarity=0.101 Sum_probs=45.3
Q ss_pred HHhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHHhh
Q 017922 179 RARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFENV 238 (364)
Q Consensus 179 ~~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l 238 (364)
..++++.+||..++.++|..+|...-.|. +...+......++|+|.|.+.++|..|.+.+
T Consensus 25 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp -CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 34699999999999999999998755553 2222221123679999999999999999865
No 188
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.90 E-value=0.05 Score=43.55 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=45.0
Q ss_pred HHHhhhcCCCCCCCCHHHhcccCCCCcee---eeccccccCCCceeEEEEeCCHHHHHHHHHh
Q 017922 178 ERARLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFEN 237 (364)
Q Consensus 178 ~~~~l~~~~iP~~l~~eel~~~~~~~~~i---~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~ 237 (364)
....+++..||..++.++|..+|...-.| .+...+......++|+|+|.+.++|..|.+.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 34569999999999999999999764444 2322222112367999999999999999876
No 189
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=93.89 E-value=0.035 Score=47.22 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=47.6
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceeeecc--ccccCCCceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIEAKA--VKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQ 251 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~~~~--~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~q 251 (364)
++++..||..++.++|..+|...-.+.+.- .+.| -..++|+|+|.+.++|..|. .+.+.. -.||+-
T Consensus 48 ~lfV~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~~g-~srGfaFV~F~~~e~A~~Al-~~~g~~---l~gR~i 115 (139)
T 2hgn_A 48 CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDG-RVTGEADVEFATHEEAVAAM-SKDRAN---MQHRYI 115 (139)
T ss_dssp CEECCSCCTTCCHHHHHHHHCSCCCSEEECCCSSSS-CSSCCCEEECSHHHHHHHHT-TCCSCS---SSSCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCCC-CCceEEEEEeCCHHHHHHHH-hhCCCE---ECCEEE
Confidence 589999999999999999998744223322 2221 23779999999999999999 665533 345543
No 190
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.84 E-value=0.027 Score=47.54 Aligned_cols=62 Identities=15% Similarity=0.202 Sum_probs=47.1
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-ec--cccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~--~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++..||..++.++|..+|...-.|. +. ..+......++|+|.|.|.++|..|.+.|+|..
T Consensus 72 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 136 (158)
T 2kn4_A 72 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 136 (158)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 589999999999999999996543443 22 221111236799999999999999999998854
No 191
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.81 E-value=0.048 Score=44.86 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=44.6
Q ss_pred hhhcCCCCCC-CCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCC
Q 017922 181 RLFLHRIPTK-VPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGN 241 (364)
Q Consensus 181 ~l~~~~iP~~-l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~ 241 (364)
.+++..||.. ++.++|..+|...-.|. +.-. +. .++|.|+|.+.++|..|.+.|++.
T Consensus 27 ~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~---kg~aFVef~~~~~A~~Ai~~l~~~ 85 (112)
T 1x4f_A 27 VIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RM---KSQAFIEMETREDAMAMVDHCLKK 85 (112)
T ss_dssp EEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TT---TTEEEEECSSHHHHHHHHHHHHHS
T ss_pred EEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cC---CCEEEEEECCHHHHHHHHHHhccC
Confidence 5889999998 99999999998754442 2111 11 359999999999999999998763
No 192
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=93.79 E-value=0.018 Score=48.07 Aligned_cols=61 Identities=15% Similarity=0.243 Sum_probs=47.3
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---------eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---------AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---------~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++..||..++.++|..+|...-.|. +...+.| ...++|+|.|.+.++|..|.+.|+|..
T Consensus 47 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g-~~~g~afV~f~~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 47 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEG-RMKGQAFIGLPNEKAAAKALKEANGYV 116 (143)
T ss_dssp EEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEET-TTEEEEEEECSSHHHHHHHHHHHTTBE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCC-CcccEEEEEeCCHHHHHHHHHHhCCCE
Confidence 589999999999999999987643332 2212232 237899999999999999999999854
No 193
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=93.78 E-value=0.023 Score=47.53 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=47.9
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCcee---eeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i---~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+++.+||..++.++|..+|...-.| .+...+......++|+|.|.|.++|..|.+.|+|..
T Consensus 48 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~ 113 (135)
T 2lea_A 48 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 113 (135)
T ss_dssp CCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 469999999999999999998764344 222222212236799999999999999999998865
No 194
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=93.71 E-value=0.059 Score=46.96 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=48.5
Q ss_pred HHhhhcCCCCCCCCHHHhcccCCCCceee-ec--cccccCC-CceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 179 RARLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRG-DNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 179 ~~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~--~~~~~~g-~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..++++..||..++.++|..+|...-.|. ++ ..+. .| ..++|+|.|.+.++|..|.+.|.|..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~ 94 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV-TMKHKGFAFVEYEVPEAAQLALEQMNSVM 94 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-C-C-CCCSEEEEEESSHHHHHHHHHHHSSCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCC-CCccCceEEEEeCCHHHHHHHHHHccCCe
Confidence 44699999999999999999997644443 22 2221 22 37799999999999999999998865
No 195
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=93.71 E-value=0.07 Score=49.23 Aligned_cols=86 Identities=8% Similarity=0.022 Sum_probs=58.7
Q ss_pred HHhhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcceEEEEe
Q 017922 179 RARLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQKLVEFQ 257 (364)
Q Consensus 179 ~~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~qk~v~~~ 257 (364)
...+++.+||..++.++|..+|...-.|. +.-.....|..+.|+|.|.+.++|..|.+ +.|..- .|++ +.+.
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~---~g~~---i~v~ 113 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVV---GQNE---IIVS 113 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEE---TTEE---CEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEe---CCcE---EEEE
Confidence 44699999999999999999997644443 22111113457899999999999999994 765443 3443 3454
Q ss_pred cCCCCeEEEEEEeecc
Q 017922 258 SNAGIIASLYVRKMVC 273 (364)
Q Consensus 258 ~~~g~~~~~~vrkm~~ 273 (364)
.... ..|||+.+-.
T Consensus 114 ~~~~--~~l~v~nlp~ 127 (292)
T 2ghp_A 114 HLTE--CTLWMTNFPP 127 (292)
T ss_dssp ECCS--CEEEEECCCT
T ss_pred ECCC--CEEEEECCCC
Confidence 4433 4778887643
No 196
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=93.67 E-value=0.024 Score=45.14 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=45.4
Q ss_pred HhhhcCCCCCC-CCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTK-VPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~-l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.++++..||.. ++.++|..+|...-.|.-... ..++|+|+|.+.++|..|.+.|+|..
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~ 86 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRV 86 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCE
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCE
Confidence 36999999999 999999999876433321111 23589999999999999999998854
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=93.64 E-value=0.088 Score=48.28 Aligned_cols=61 Identities=23% Similarity=0.254 Sum_probs=47.6
Q ss_pred HHhhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 179 RARLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 179 ~~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
..++++.+||+.++.++|..+|...-.|. +.-. + ..++|+|.|.+.+.|..|...|+|..-
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~---~kg~afV~f~~~~~A~~A~~~l~g~~i 83 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN-R---DRGFGFIRLESRTLAEIAKAELDGTIL 83 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE-T---TTTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe-C---CCcEEEEEECCHHHHHHHHHHcCCcEE
Confidence 34699999999999999999997643442 2111 1 135999999999999999999998764
No 198
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=92.71 E-value=0.012 Score=47.32 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=47.5
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceeee---------cc-ccccCC-CceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIEA---------KA-VKRIRG-DNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~~---------~~-~~~~~g-~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.++++..||..++.++|..+|...-.|.. .- ..+..| ..++|+|.|.+.++|..|.+.|+|..
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 8 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 46899999999999999999987544431 11 111122 26799999999999999999998854
No 199
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.58 E-value=0.027 Score=47.36 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=50.3
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcce
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 252 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~qk 252 (364)
.++++..||..++.++|..+|...-.|. +.-.. ...++|+|.|.+.++|..|.+.|+|..- .|++-+
T Consensus 74 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 141 (150)
T 2i2y_A 74 CKVYVGNLGNNGNKTELERAFGYYGPLRSVWVAR---NPPGFAFVEFEDPRDAADAVRELDGRTL---CGCRVR 141 (150)
T ss_dssp CEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECS---SSCSEEEEEESSHHHHHHHHHHHSSSCS---SSSCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEee---CCCcEEEEEECCHHHHHHHHHHcCCCEE---CCeEEE
Confidence 3699999999999999999987643443 21111 1346999999999999999999998653 466544
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=93.54 E-value=0.039 Score=46.35 Aligned_cols=63 Identities=16% Similarity=0.236 Sum_probs=48.7
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
..+++.+||..++.++|..+|...-.|. +...+. .|. .+.|.|.|.|.++|..|.+.|+|..-
T Consensus 95 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (172)
T 2g4b_A 95 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA-TGLSKGYAFCEYVDINVTDQAIAGLNGMQL 161 (172)
T ss_dssp TCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTT-TCSEEEEEEEEESSTTHHHHHHHHHTTCEE
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCC-CCCcceEEEEEeCCHHHHHHHHHHcCCCEE
Confidence 3588999999999999999998654553 222221 233 78999999999999999999998643
No 201
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=93.39 E-value=0.031 Score=50.08 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=51.0
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCcee-----eeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCccCCCCCC
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTI-----EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGR 249 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i-----~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~ 249 (364)
.|++..||..++.++|..+|...-.+ .+-+.+ .+..+.+.|.|.|.++|..|...|+|..-..+.|+
T Consensus 125 ~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~ 196 (205)
T 3tyt_A 125 VLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGP 196 (205)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSS
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCC
Confidence 48888999999999999998653333 222222 13358999999999999999999999876655544
No 202
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=93.34 E-value=0.037 Score=46.25 Aligned_cols=68 Identities=19% Similarity=0.299 Sum_probs=48.4
Q ss_pred hhhcCCCCCCCCHHHhc----ccCCCCcee-eeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcce
Q 017922 181 RLFLHRIPTKVPSEELH----GVIPGDFTI-EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 252 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~----~~~~~~~~i-~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~qk 252 (364)
.+++..||..++.++|. .+|...-.| .+.-.+.| ...|+|.|+|.+.++|..|.+.|+|..- .|++-+
T Consensus 31 ~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~-~~rG~aFV~F~~~~~A~~Ai~~lng~~l---~gr~l~ 103 (127)
T 2a3j_A 31 VVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSD-DNSGKAYIVFATQESAQAFVEAFQGYPF---QGNPLV 103 (127)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCC-SSCCCEEEEESSHHHHHHHHHHSTTCCC---TTSCCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCC-CcCCEEEEEECCHHHHHHHHHHHCCCEe---CCCEEE
Confidence 59999999999998865 466543334 22222222 2367999999999999999999998643 466543
No 203
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=93.27 E-value=0.061 Score=44.91 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=44.2
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee-eccc-cccCC-CceeEEEEeCCHHHHHHHHHh
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE-AKAV-KRIRG-DNYAAFAIFSSPQEANQAFEN 237 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~-~~~~g-~~~~~~~~f~s~~~~~~af~~ 237 (364)
.++++.+||..++.++|..+|...-.|. +.-. .+..| ..+.|.|.|.+.++|..|.++
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 3588999999999999999998754553 2211 11122 267999999999999999996
No 204
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.27 E-value=0.023 Score=43.88 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=48.1
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-ec--cccccCCCceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcce
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 252 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~--~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~qk 252 (364)
++++..||..++.++|..+|...-.|. ++ ...+..| .|+|+|.+.++|..|.+.|.|..- .|++-+
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~---~afV~f~~~~~a~~Ai~~l~g~~~---~g~~l~ 85 (96)
T 2e44_A 17 KLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA---VVNVTYSSKDQARQALDKLNGFQL---ENFTLK 85 (96)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE---EEEEEESSHHHHHHHHHHHTTCBC---SSCBCE
T ss_pred EEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC---EEEEEECCHHHHHHHHHHhCCCEE---CCcEEE
Confidence 588999999999999999987543443 21 2222122 299999999999999999998654 355543
No 205
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=93.26 E-value=0.04 Score=48.50 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=47.8
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCccC
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSK 244 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~ 244 (364)
++++..||..++.++|..+|...-.|. +.-..+ ...+++.|+|.+.++|..|.+.|+|..--
T Consensus 48 ~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k--~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~ 110 (164)
T 1sjr_A 48 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIY 110 (164)
T ss_dssp EEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES--SSCEEEEEEESCHHHHHHHHHHSTTBCSS
T ss_pred EEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCCEEEEEECCHHHHHHHHHHhCCCEec
Confidence 577899999999999999997644443 221112 13479999999999999999999998653
No 206
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=93.21 E-value=0.047 Score=49.87 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=48.6
Q ss_pred HHhhhcCCCCCCCCHHHhcccCCCCc--eee-ec--cccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 179 RARLFLHRIPTKVPSEELHGVIPGDF--TIE-AK--AVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 179 ~~~l~~~~iP~~l~~eel~~~~~~~~--~i~-~~--~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+|++..||..++.++|..+|...- .|. ++ ..+. .|. .++|+|+|.+.++|..|.+.|+|..
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~-tg~skGfaFV~f~~~~~a~~Ai~~lng~~ 136 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRA-NGQSKGFALVGVGSEASSKKLMDLLPKRE 136 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTT-TCCEEEEEEEEESCTTHHHHHHTTSTTSC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHcCCCe
Confidence 34699999999999999999997654 342 22 1222 333 7899999999999999999998765
No 207
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=93.05 E-value=0.067 Score=47.49 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=48.8
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee-eccc-cccCC-CceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE-AKAV-KRIRG-DNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~-~~~~g-~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
..|++..||..++.++|..+|...-.|. ++-. .+..| ..++|.|.|.+.++|..|.+.+.|..-
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~ 82 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI 82 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc
Confidence 3599999999999999999997644443 2211 11123 378999999999999999999988654
No 208
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=92.97 E-value=0.064 Score=45.98 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=44.5
Q ss_pred HHhhhcCCCCCCCCHHHhcccCCCCceee-ec--cccccCC-CceeEEEEeCCHHHHHHHHHh
Q 017922 179 RARLFLHRIPTKVPSEELHGVIPGDFTIE-AK--AVKRIRG-DNYAAFAIFSSPQEANQAFEN 237 (364)
Q Consensus 179 ~~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~--~~~~~~g-~~~~~~~~f~s~~~~~~af~~ 237 (364)
...+++..||..++.++|..+|...-.|. ++ ..+. .| ..+.|+|.|.+.++|..|.+.
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 74 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN-TKRSRGFGFVTYATVEEVDAAMNA 74 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCC-CCCccceEEEEeCCHHHHHHHHhc
Confidence 34699999999999999999998644442 22 2222 23 378999999999999999976
No 209
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=92.84 E-value=0.058 Score=47.33 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=47.9
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCcee---eeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i---~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
..+++..||..++.++|..+|...-.| .+...+. ....++|+|+|.+.++|..|.+.|+|..-
T Consensus 89 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~-g~~kG~afV~F~~~~~A~~Ai~~lng~~l 154 (177)
T 2f3j_A 89 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRS-GRSLGTADVHFERRADALKAMKQYKGVPL 154 (177)
T ss_dssp EEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTT-SSCSCCEEEEESCHHHHHHHHHHSTTCBC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCEeeEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 368999999999999999988754333 3322222 12367999999999999999999988643
No 210
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.81 E-value=0.071 Score=43.02 Aligned_cols=60 Identities=15% Similarity=0.272 Sum_probs=47.3
Q ss_pred hhcCCCCCCCCHHH----hcccCCCCc-ee-eeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcce
Q 017922 182 LFLHRIPTKVPSEE----LHGVIPGDF-TI-EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 252 (364)
Q Consensus 182 l~~~~iP~~l~~ee----l~~~~~~~~-~i-~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~qk 252 (364)
+++..||..++.++ |..+|...- .| .+ .| |+|.|+|.+.+.|..|+++|+|.. =.|||-+
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg--G~AfV~F~~~esA~~A~~~l~G~~---l~gr~i~ 77 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG--CSAILRFINQDSAERAQKRMENED---VFGNRII 77 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT--TCEEEEESSHHHHHHHHHHHTTCC---SSSSCCE
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec--CEEEEEECCHHHHHHHHHHhcCCc---cCCceEE
Confidence 67899999999888 557887652 33 44 12 799999999999999999999864 4577766
No 211
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=92.77 E-value=0.078 Score=48.63 Aligned_cols=69 Identities=22% Similarity=0.232 Sum_probs=51.1
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhc-CCccCCCCCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVK-GNQSKDSYGRPQ 251 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~-g~~~~d~~g~~q 251 (364)
.+++.+||..++.++|..+|...-.|. +.... .|. .+.|+|.|.+.++|..|.+.|. |.......|||-
T Consensus 98 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 98 ALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD--RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred cccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC--CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 588999999999999999997644442 22222 333 7899999999999999999994 444444455543
No 212
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=92.72 E-value=0.024 Score=44.36 Aligned_cols=55 Identities=11% Similarity=0.161 Sum_probs=42.6
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHH
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFE 236 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~ 236 (364)
++++.+||..++.++|..+|...-.|. +...+. ....+.|.|+|.+.++|..|.+
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 11 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRT-GVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSCCCHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC-CCccceEEEEECCHHHHHHHHh
Confidence 588999999999999999987644442 222222 1237899999999999999998
No 213
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=92.61 E-value=0.13 Score=45.68 Aligned_cols=60 Identities=12% Similarity=0.231 Sum_probs=45.5
Q ss_pred HHhhhcCCCCCCCCHHHhcccCCCCceee-eccccccCC-CceeEEEEeCCHHHHHHHHHhh
Q 017922 179 RARLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRG-DNYAAFAIFSSPQEANQAFENV 238 (364)
Q Consensus 179 ~~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g-~~~~~~~~f~s~~~~~~af~~l 238 (364)
...+++.+||..++.++|..+|...-.|. +.-.+...| ..|+|.|+|.+.++|..|.+.+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC
Confidence 34599999999999999999998755553 211111123 3789999999999999999765
No 214
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=92.36 E-value=0.059 Score=45.24 Aligned_cols=62 Identities=26% Similarity=0.271 Sum_probs=44.4
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCC----cee-----eeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGD----FTI-----EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~----~~i-----~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.++++.+||+.++.++|..+|... -.+ .+...+.+ ...+.|.|.|.++++|..|. .++|..-
T Consensus 5 ~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 358899999999999999998753 100 11111111 12469999999999999999 8887653
No 215
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.28 E-value=0.13 Score=42.96 Aligned_cols=60 Identities=18% Similarity=0.062 Sum_probs=47.0
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCCce-eEEEEeCCHHHHHHHHHhhcCCccC
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNY-AAFAIFSSPQEANQAFENVKGNQSK 244 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~-~~~~~f~s~~~~~~af~~l~g~~~~ 244 (364)
.+++..||..++.++|..+|...-.|. +.-..+ . + .|.|+|.+.++|..|.+.|+|..--
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~---Gf~aFVef~~~~~A~~A~~~LnG~~i~ 88 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-N---GIQAMVEFESVLCAQKAKAALNGADIY 88 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-S---SEEEEEEESSHHHHHHHHHHHTTCCCB
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-C---CCEEEEEECCHHHHHHHHHHhCCCEec
Confidence 466789999999999999998865553 222222 2 4 5999999999999999999997643
No 216
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=92.10 E-value=0.098 Score=52.48 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=49.2
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
..|++.+||..++.++|..+|...-.|. +...+. .|. .++|+|+|.+.+.|..|+..|+|..-
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~-tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i 169 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKR-SGKPRGYAFIEYEHERDMHSAYKHADGKKI 169 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCC-CCCccceEEEeeccHHHHHHHHHHcCCCEE
Confidence 3699999999999999999998754553 222222 233 78999999999999999999998653
No 217
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=91.87 E-value=0.12 Score=47.47 Aligned_cols=61 Identities=20% Similarity=0.215 Sum_probs=46.9
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.+++..||..++.++|..+|...-.|.-...-. +..++|+|.|.+.++|..|.+.|+|..-
T Consensus 209 ~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~ 269 (282)
T 3pgw_A 209 ILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP--GRHDIAFVEFDNEVQAGAARDALQGFKI 269 (282)
T ss_pred EEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec--CCCcEEEEEeCCHHHHHHHHHHcCCcEe
Confidence 489999999999999999997644443111111 2235999999999999999999999543
No 218
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=91.83 E-value=0.13 Score=45.91 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=47.1
Q ss_pred hhhcCCCC-CCCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIP-TKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP-~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.+++..|| ..++.++|..+|...-.|. ++-.+. ..+++.|.|.+.++|..|.+.|+|..-
T Consensus 6 ~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~lng~~~ 67 (205)
T 3tyt_A 6 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS---KPGAAMVEMADGYAVDRAITHLNNNFM 67 (205)
T ss_dssp EEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT---STTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 47888999 7999999999998755553 322221 245899999999999999999998654
No 219
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=91.77 E-value=0.083 Score=45.35 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=47.9
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..+++.+||..++.++|..+|...-.|. +...+. .|. .+.|+|.|.|.++|..|.+.|+|..
T Consensus 115 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 180 (198)
T 2yh0_A 115 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA-TGLSKGYAFCEYVDINVTDQAIAGLNGMQ 180 (198)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTT-TCSEEEEEEEEESSSSHHHHHHHHHTTCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCC-CCCcceEEEEEECCHHHHHHHHHHcCCCE
Confidence 3588999999999999999987644442 222221 233 7899999999999999999998854
No 220
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=91.72 E-value=0.16 Score=46.61 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=47.0
Q ss_pred hhhcCCCCCCCCHHHhc----ccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELH----GVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~----~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
++++..||..++.++|. .+|...-.|. ++-.+.| ...++|+|+|.+.++|..|.+.|+|..
T Consensus 11 ~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~ 76 (282)
T 3pgw_A 11 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL-KMRGQAFVIFKEVSSATNALRSMQGFP 76 (282)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCC-CcceEEEEEECCHHHHHHHHHHhcCCe
Confidence 68999999999999966 7887644443 3323332 236799999999999999999998854
No 221
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=91.68 E-value=0.19 Score=46.01 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=48.1
Q ss_pred hhhcCCCCCCC-CHHHhcccCCCCceee---eccccccCCC-ceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKV-PSEELHGVIPGDFTIE---AKAVKRIRGD-NYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l-~~eel~~~~~~~~~i~---~~~~~~~~g~-~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.+++.+||..+ +.++|..+|...-.|. +.... .|. .+.|.|.|.|.++|..|.+.|.|..-
T Consensus 186 ~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 186 CLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp EEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred EEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 48899999997 8899999998755442 22222 233 78999999999999999999998654
No 222
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=91.18 E-value=0.063 Score=46.14 Aligned_cols=61 Identities=26% Similarity=0.347 Sum_probs=43.8
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCc---ee------eeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDF---TI------EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~---~i------~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.++++..||..++.++|..+|...- .+ .+.....+ ...++|+|.|.+.++|..|. .|+|..
T Consensus 5 ~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-TTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-CCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 3588999999999999999987521 00 11111111 12468999999999999999 787754
No 223
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.91 E-value=0.12 Score=39.12 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=38.3
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHH
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQ 233 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~ 233 (364)
++++..||..++.++|..+|...-.|. +.-... ..++|+|+|.+.++|..
T Consensus 7 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~ 57 (88)
T 1wf0_A 7 GVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQS 57 (88)
T ss_dssp EEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHH
Confidence 588899999999999999998755553 222221 34589999999999964
No 224
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=90.84 E-value=0.24 Score=42.35 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=43.7
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCC-CceeEEEEeCCHHHHHHHHHh
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRG-DNYAAFAIFSSPQEANQAFEN 237 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g-~~~~~~~~f~s~~~~~~af~~ 237 (364)
.+++..||..++.++|..+|...-.|. +...+. .| ..+.|+|.|.+.++|..|.+.
T Consensus 106 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG-SGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHC
T ss_pred eEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCC-CCCccceEEEEECCHHHHHHHHHh
Confidence 589999999999999999998755553 222221 23 378999999999999999974
No 225
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=90.83 E-value=0.15 Score=49.77 Aligned_cols=66 Identities=18% Similarity=0.298 Sum_probs=50.3
Q ss_pred hhhcCC--CCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCccCCCCCC
Q 017922 181 RLFLHR--IPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGR 249 (364)
Q Consensus 181 ~l~~~~--iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~ 249 (364)
.|++.. ++.+++.++|.++|...-.+.-.-..+++ ++|.|+|.|.++|..|++.|+|..--+..|+
T Consensus 20 ~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~k---gfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 20 SLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK---PYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp EEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTC---SEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC---CEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 477755 67899999999999876555421111223 5999999999999999999999988665564
No 226
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=90.80 E-value=0.12 Score=43.04 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=42.6
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee---eccccccCCCceeEEEEeCCHHHHHHHHH
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE---AKAVKRIRGDNYAAFAIFSSPQEANQAFE 236 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~---~~~~~~~~g~~~~~~~~f~s~~~~~~af~ 236 (364)
.+++.+||..++.++|..+|...-.|. +...+......+.|.|.|.|.+.|..|.+
T Consensus 89 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 89 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp EEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred eEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 589999999999999999987654442 22222212236799999999999999997
No 227
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=90.55 E-value=0.1 Score=45.13 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=45.8
Q ss_pred hhhcCCCCC-CCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPT-KVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~-~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.+++.+||+ .++.++|..+|...-.|. ++-... ..+.|.|.|.+.++|..|.+.|+|..-
T Consensus 5 ~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~~~~~ 66 (198)
T 1qm9_A 5 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN---KKENALVQMADGNQAQLAMSHLNGHKL 66 (198)
T ss_dssp EEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT---CSSCCEEECTTTHHHHHHHHHHTTCCC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCee
Confidence 478899999 999999999987644442 222211 134799999999999999999998654
No 228
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=90.46 E-value=0.11 Score=41.34 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=43.3
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCcee---eeccccccCCCceeEEEEeCCHHHHHHHHHhhcC
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKG 240 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i---~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g 240 (364)
.+++..|++.++.++|..+|...-.+ .+.. ..|.+.|+|.|+++|..|.+.|+|
T Consensus 9 wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~ 65 (89)
T 2wbr_A 9 WLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNN 65 (89)
T ss_dssp EEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTT
T ss_pred eEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcC
Confidence 36788999999999999998753333 2222 245999999999999999999987
No 229
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=90.44 E-value=0.26 Score=37.85 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=39.1
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHH
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEAN 232 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~ 232 (364)
..+++.+||..++.++|..+|...-.|. +.-... ..|++.|+|.+.++|.
T Consensus 12 ~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~ 62 (89)
T 3d2w_A 12 SKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQ 62 (89)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHH
Confidence 3689999999999999999998755553 222221 3469999999999998
No 230
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=90.37 E-value=0.1 Score=46.83 Aligned_cols=61 Identities=13% Similarity=0.190 Sum_probs=46.4
Q ss_pred HhhhcCCCCC-CCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 180 ARLFLHRIPT-KVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 180 ~~l~~~~iP~-~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
..+++.+||. .++.++|..+|...-.|. ++-... ..+.|+|.|.+.++|..|.+.|+|..-
T Consensus 35 ~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~---~~g~afV~F~~~~~A~~Ai~~l~g~~~ 97 (229)
T 2adc_A 35 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN---KKENALVQMADGNQAQLAMSHLNGHKL 97 (229)
T ss_dssp SEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCT---TSCCEEEEESCHHHHHHHHHHHTTCBC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEEC---CCCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 3699999999 999999999986533342 221111 134799999999999999999998654
No 231
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=89.86 E-value=0.17 Score=43.74 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=48.7
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCc-ee---eeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcce
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDF-TI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 252 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~-~i---~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~qk 252 (364)
.+++..||..++.++|..+|...- .| .+.+.. .+.|+|.|.|.++|..|.+.|.|..-. .|++-+
T Consensus 122 ~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~--~g~~l~ 190 (198)
T 1qm9_A 122 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLG--ENHHLR 190 (198)
T ss_dssp EEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCS--SCCSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccC--CCCeEE
Confidence 488899999999999998886543 33 332222 359999999999999999999997642 255544
No 232
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=89.56 E-value=0.23 Score=44.43 Aligned_cols=60 Identities=25% Similarity=0.336 Sum_probs=46.5
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCc-eee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDF-TIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~-~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.+++..||..++.++|..+|...- .|. +.-... ..+.|+|.|.|.++|..|.+.|+|..-
T Consensus 153 ~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~ 214 (229)
T 2adc_A 153 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDL 214 (229)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS---STTCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred EEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC---CCcEEEEEECCHHHHHHHHHHHCCCcc
Confidence 488899999999999999987754 443 221111 134899999999999999999999664
No 233
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=89.40 E-value=0.74 Score=47.77 Aligned_cols=69 Identities=13% Similarity=-0.029 Sum_probs=42.7
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCCcccccccccCCCChhhhcCCCCCHHHHHHHHHHhhc
Q 017922 2 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEKAVADYRSEITGLTADDLVGVTCSLAEIQKRMKKLLS 81 (364)
Q Consensus 2 ~~~~~ValD~ETTGl~~g~~~Ii~V~vVd~~G~vi~d~lVkP~~~I~d~~t~itGIT~e~L~~ap~~~~eV~~el~~fl~ 81 (364)
++..++++|+||+. ++.++.+..+|+.+..+...|.. .. .+.+..+.+. .
T Consensus 4 ~~~~i~~~D~Et~~-d~~~~~~~~i~~~~~~~~~~~~~-------------------------~~-~l~~fi~~~~---~ 53 (575)
T 2py5_A 4 MPRKMYSCAFETTT-KVEDCRVWAYGYMNIEDHSEYKI-------------------------GN-SLDEFMAWVL---K 53 (575)
T ss_dssp -CCCEEEEEEEECC-BTTBCCEEEEEEEESSCTTCEEE-------------------------ES-CHHHHHHHHH---H
T ss_pred ccceEEEEEEEeec-CCCCCceEEEEEEeCCceEEEEe-------------------------ch-hHHHHHHHHH---H
Confidence 46789999999975 44445678888876432211110 01 2344444333 2
Q ss_pred CCCEEEEechhhHHHHHcc
Q 017922 82 NGTILVGHSLNNDLEVLKL 100 (364)
Q Consensus 82 ~~~iLVGHn~~fDl~fL~~ 100 (364)
.+.++++||+.||..+|-.
T Consensus 54 ~~~~i~~hNl~FD~~~l~~ 72 (575)
T 2py5_A 54 VQADLYFHNLKFAGAFIIN 72 (575)
T ss_dssp HCCEEEETTHHHHHHHHHH
T ss_pred cCCEEEEEChhhhHHHHHH
Confidence 4578999999999999853
No 234
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=89.17 E-value=0.053 Score=45.87 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=44.5
Q ss_pred HhhhcCCCCCCCCHHHhcccCCCCcee---eeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 180 ARLFLHRIPTKVPSEELHGVIPGDFTI---EAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 180 ~~l~~~~iP~~l~~eel~~~~~~~~~i---~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
..+++..||..++.++|..+|.....+ .+.....| ...+.|.|.|.+.++|..|. .|+|..-
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~-~~~g~afV~f~~~~~a~~A~-~l~g~~~ 78 (175)
T 1fje_B 14 FNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTG-TNRKFGYVDFESAEDLEKAL-ELTGLKV 78 (175)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEE-TTTTEEEEEESSHHHHHHHH-HGGGEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCC-ccccEEEEEECCHHHHHHHH-hcCCCEe
Confidence 368999999999999998777553222 12222221 23569999999999999999 4877643
No 235
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.04 E-value=0.36 Score=37.19 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=41.5
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
++++..+ .++.++|..+|...-.|.-..... ..++|+|.|.+.++|..|.+.|+|..
T Consensus 17 ~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~a~~Ai~~l~g~~ 73 (97)
T 1x5p_A 17 TLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---PRNCAFVTYEKMESADQAVAELNGTQ 73 (97)
T ss_dssp EEEEECS--SCCHHHHHHHHTTTSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHTTTEE
T ss_pred EEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCe
Confidence 4666664 788999999998754553111111 23489999999999999999998754
No 236
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=88.66 E-value=0.23 Score=45.66 Aligned_cols=61 Identities=18% Similarity=0.320 Sum_probs=46.1
Q ss_pred hhhcCCCCCC-CCHHHhcccCCCCceee-eccccccC--C-CceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 181 RLFLHRIPTK-VPSEELHGVIPGDFTIE-AKAVKRIR--G-DNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 181 ~l~~~~iP~~-l~~eel~~~~~~~~~i~-~~~~~~~~--g-~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
.+++.+||.. ++.++|..+|...-.|. +.-..... | ..+.|+|.|.+.++|..|+ .|.|..
T Consensus 212 ~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~ 277 (292)
T 2ghp_A 212 EIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSL 277 (292)
T ss_dssp EEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEE
T ss_pred eEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCE
Confidence 5888999999 99999999998754443 22111111 2 3789999999999999999 998865
No 237
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.95 E-value=0.93 Score=36.08 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=35.9
Q ss_pred CCCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcC
Q 017922 189 TKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKG 240 (364)
Q Consensus 189 ~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g 240 (364)
.+++.++|..+|...-.|. +.-.. ...++|+|+|.+.++|..|.+.+.+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC
Confidence 5678899999987755553 21111 2356999999999999999998544
No 238
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=84.68 E-value=1 Score=35.90 Aligned_cols=51 Identities=12% Similarity=0.027 Sum_probs=35.0
Q ss_pred HHHhcccCCCCceee---eccc-cccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 193 SEELHGVIPGDFTIE---AKAV-KRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 193 ~eel~~~~~~~~~i~---~~~~-~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.++|...|...-.|. +... +.+....|+++|.|.++++|..|++.|+|..-
T Consensus 27 ~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~ 81 (105)
T 2pe8_A 27 EVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF 81 (105)
T ss_dssp HHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 566777776543442 2111 11112378999999999999999999999864
No 239
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=84.11 E-value=1.4 Score=47.80 Aligned_cols=78 Identities=14% Similarity=0.104 Sum_probs=55.8
Q ss_pred HHHHHhhcCCCEEEEechhhHHHHHccc---CCCccchHHHhhhhcCCCCccHHHHHHHHhCCccCCCCCCCChHHHHHH
Q 017922 74 KRMKKLLSNGTILVGHSLNNDLEVLKLD---HPRVIDTSLIFKYVDEYRRPSLYNLCKSVLGYEIRKKGTPHNCLDDASA 150 (364)
Q Consensus 74 ~el~~fl~~~~iLVGHn~~fDl~fL~~~---~~~vIDT~~L~r~~~~~~~~sL~~L~k~~Lgi~i~~~~~~H~Al~DA~A 150 (364)
+.|..++....+ |+.||+.+|... ...+.||...+..+.|. +|+|+.|+.+| |... . .. .| .||.+
T Consensus 340 ~~Lk~lLed~~i----n~K~d~~~L~~~Gi~~~~~~Dt~laayLl~p~-~~~l~~l~~~~-gk~~-~--~~-ya-~da~~ 408 (832)
T 1bgx_T 340 KALRDLKEARGL----LAKDLSVLALREGLGLPPGDDPMLLAYLLDPS-NTTPEGVARRY-GGEW-T--EE-AG-ERAAL 408 (832)
T ss_dssp HHHHHCSSBCBT----THHHHHHHHHHHTCCCCBCCCHHHHHHHHCTT-CCSTTHHHHHH-SCCC-C--SS-HH-HHHHH
T ss_pred HHHHHHHhCCCC----ChHHHHHHHHHcCCccCcccCHHHHHHHcCCC-CCCHHHHHHHh-CCCc-h--HH-HH-HHHHH
Confidence 457788833344 999999999652 33468999888888876 89999999776 5421 1 11 23 79999
Q ss_pred HHHHHHHHHHhc
Q 017922 151 AMKLVLAIIERR 162 (364)
Q Consensus 151 ta~L~~~~le~g 162 (364)
+..|+..+...-
T Consensus 409 ~~~l~~~l~~~L 420 (832)
T 1bgx_T 409 SERLFANLWGRL 420 (832)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998775443
No 240
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=83.84 E-value=2.4 Score=34.11 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=52.8
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceeeec---ccc--ccCCCceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIEAK---AVK--RIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRP 250 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~~~---~~~--~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~ 250 (364)
++-+.+|||+++.+++...+.....+++- +.+ .+.-.+.-|++.|++++.+..=.+..+|..=.|+-|.-
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~ 85 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLE 85 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCE
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCE
Confidence 45577899999999988776654444442 111 12334778999999999999999999999999988874
No 241
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=83.64 E-value=0.42 Score=38.08 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=24.1
Q ss_pred CceeEEEEeCCHHHHHHHHHhhcCCc
Q 017922 217 DNYAAFAIFSSPQEANQAFENVKGNQ 242 (364)
Q Consensus 217 ~~~~~~~~f~s~~~~~~af~~l~g~~ 242 (364)
..|.+.|.|.++++|..|++.|+|..
T Consensus 67 ~~G~~fV~f~~~~~A~~A~~~lng~~ 92 (104)
T 1jmt_A 67 LVGNVYVKFRREEDAEKAVIDLNNRW 92 (104)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred ccEEEEEEECCHHHHHHHHHHHCCCE
Confidence 37899999999999999999999975
No 242
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=82.67 E-value=0.81 Score=37.27 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=41.4
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceee-eccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIE-AKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~-~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
++++..+ .++.++|..+|...-.|. +.-. ...++|+|.|.+.++|..|.+.|+|..-
T Consensus 41 ~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~ 98 (121)
T 2bz2_A 41 TLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQV 98 (121)
T ss_dssp EEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBC
T ss_pred EEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4666664 588999999987644442 1111 1235899999999999999999988753
No 243
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=82.12 E-value=1.2 Score=35.39 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=27.5
Q ss_pred CceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcce
Q 017922 217 DNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 252 (364)
Q Consensus 217 ~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~qk 252 (364)
..+++.|.|.++++|..|++.|+|+.- .||+-+
T Consensus 58 ~~G~~fV~f~~~~~A~~Ai~~lnG~~f---~GR~i~ 90 (105)
T 3v4m_A 58 GCGKIFVEFTSVFDCQKAMQGLTGRKF---ANRVVV 90 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEe---CCCEEE
Confidence 368999999999999999999999864 355544
No 244
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=81.60 E-value=0.57 Score=43.44 Aligned_cols=60 Identities=15% Similarity=0.109 Sum_probs=46.6
Q ss_pred hhhcCCCCCCC---------CHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 181 RLFLHRIPTKV---------PSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 181 ~l~~~~iP~~l---------~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.|++.+||..+ +.++|..+|...-.|+-...-. ..++|.|+|.+.+.|..|.+.|.|..-
T Consensus 136 tLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 136 TLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp EEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred eeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 58999999988 5888999998765664211111 135999999999999999999999775
No 245
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=80.07 E-value=1.2 Score=36.20 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=23.7
Q ss_pred ceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 218 NYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 218 ~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
.|+++|.|.+.++|..|++.|.|..-
T Consensus 55 ~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 55 QGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp TCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 56899999999999999999999863
No 246
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.89 E-value=2.6 Score=34.99 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=42.7
Q ss_pred hhcCCCCCC-CCHHHhcccCCCCceeeeccccccCCCceeEEEEeCC-HHHHHHHHHhh
Q 017922 182 LFLHRIPTK-VPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSS-PQEANQAFENV 238 (364)
Q Consensus 182 l~~~~iP~~-l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s-~~~~~~af~~l 238 (364)
+++.++|.. .+.++|..+|...-.|....-.. |.. .++|.|.+ +++|..|.+.+
T Consensus 21 l~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~--g~~-tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 21 LKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR--GAK-EGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp EEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT--TCS-EEEEEESSCHHHHHHHHHHT
T ss_pred EEEecCCCCcCCHHHHHHHHHhcCCEEEEEEec--CCC-EEEEEECCChHHHHHHHHHh
Confidence 667788999 99999999999866665444444 222 59999999 79999999987
No 247
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.08 E-value=1.5 Score=34.72 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=32.1
Q ss_pred HHhcccCCCCceee-ec-cccccCCCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 194 EELHGVIPGDFTIE-AK-AVKRIRGDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 194 eel~~~~~~~~~i~-~~-~~~~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
++|..+|...-.|. +. ..+ ...++|+|+|.+.++|..|.+.|+|..-
T Consensus 41 ~~l~~~f~~~G~v~~v~i~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 41 EDLRVECSKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp HHHHHHGGGTSCCSEEEEETT---CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred HHHHHHHHccCCEeEEEEecC---CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 56666665533332 11 111 1456899999999999999999998653
No 248
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=76.95 E-value=1.6 Score=34.55 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=50.8
Q ss_pred hhhcCCCCCCCCHHHhcccCCCCceeeec---ccc--ccCCCceeEEEEeCCHHHHHHHHHhhcCCccCCCCCC
Q 017922 181 RLFLHRIPTKVPSEELHGVIPGDFTIEAK---AVK--RIRGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGR 249 (364)
Q Consensus 181 ~l~~~~iP~~l~~eel~~~~~~~~~i~~~---~~~--~~~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~ 249 (364)
|+-+.+||++++.+++...+.....+++- +.+ .+.-.+.-|++.|++.+.+..=.+.++|..=.|+-|.
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~ 76 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQ 76 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCC
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCC
Confidence 34466899999999977555544444432 221 1234488899999999999999999999999998875
No 249
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=76.60 E-value=1.9 Score=32.95 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=25.5
Q ss_pred HHHHHHHhhhccccchhhhhhhHHHHHHHHH
Q 017922 325 IERLKRELREKDFQISMQDKNISDLKKKVAE 355 (364)
Q Consensus 325 ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (364)
|..|+..|+.|+-||..++.+|..|.+.+++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~e 51 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQ 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888888888888877
No 250
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=74.53 E-value=1.2 Score=37.98 Aligned_cols=59 Identities=14% Similarity=0.053 Sum_probs=39.7
Q ss_pred hhhcCCC----CCCCCHHHhcccCCCCcee---eeccccccCCC-ceeEEEEeCC----HHH----HHHHHH--hhcC
Q 017922 181 RLFLHRI----PTKVPSEELHGVIPGDFTI---EAKAVKRIRGD-NYAAFAIFSS----PQE----ANQAFE--NVKG 240 (364)
Q Consensus 181 ~l~~~~i----P~~l~~eel~~~~~~~~~i---~~~~~~~~~g~-~~~~~~~f~s----~~~----~~~af~--~l~g 240 (364)
++++.++ |+.++.++|..+|...-.| .+...+. .|. .|.+.|+|.+ +++ |..|+. .++|
T Consensus 4 kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~-Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 4 EIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPN-SALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp EEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTT-TCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 4677888 9999999999999764343 2222222 344 8899999997 544 677777 4444
No 251
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=73.21 E-value=2.7 Score=38.44 Aligned_cols=148 Identities=17% Similarity=0.168 Sum_probs=96.9
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCC--cccccccccCCCChhhhcCCCCCHHHHHHHHHHh
Q 017922 2 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEK--AVADYRSEITGLTADDLVGVTCSLAEIQKRMKKL 79 (364)
Q Consensus 2 ~~~~~ValD~ETTGl~~g~~~Ii~V~vVd~~G~vi~d~lVkP~~--~I~d~~t~itGIT~e~L~~ap~~~~eV~~el~~f 79 (364)
.|+.-++||+|-.-.+ -+++++.-....-.++.|=.|.. .+.+...--|||--.||.++. | -+...+.+.
T Consensus 55 dP~~ttWiDIEG~p~D-----PVElAiyQP~sg~YIHcyR~P~D~K~FK~~SKySHGillkDl~~aq-P--GL~S~vi~~ 126 (243)
T 3q7c_A 55 DPNAKTWMDIEGRPED-----PVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQ-P--GLTSAVIDA 126 (243)
T ss_dssp CTTSCCEEEEESCTTS-----CSEEEEEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGTTBC-T--THHHHHHHH
T ss_pred CCCCCeEEecCCCCCC-----CeEEEEeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcC-C--chHHHHHHh
Confidence 3455678999976433 46788888744336778878864 556667778999999999987 3 466778888
Q ss_pred hcCCCEEEEechhhHHHHHcccCCC----ccchH---HHhhhhcCCCCccHHHHHHHHhCCccCC---C----CCCCChH
Q 017922 80 LSNGTILVGHSLNNDLEVLKLDHPR----VIDTS---LIFKYVDEYRRPSLYNLCKSVLGYEIRK---K----GTPHNCL 145 (364)
Q Consensus 80 l~~~~iLVGHn~~fDl~fL~~~~~~----vIDT~---~L~r~~~~~~~~sL~~L~k~~Lgi~i~~---~----~~~H~Al 145 (364)
+..+-||-+.+. -|++-|--.|.| +||.. .-+|.+-..-+-.-..||+.+-|+-+.. | ...|-||
T Consensus 127 LP~nMVlT~QGs-DDIrkLld~hGRrDiKlIDV~lt~eqaR~FEd~VWd~f~~LC~~H~GvVv~KKKkg~~~s~~PHCAL 205 (243)
T 3q7c_A 127 LPRNMVITCQGS-DDIRKLLESQGRKDIKLIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVVEKKKRGGKEEITPHCAL 205 (243)
T ss_dssp SCTTCEEEESSH-HHHHHHHHHTTCTTSEEEECCCCHHHHTTTHHHHHHHHGGGCCCBCSCEECCCSSSSCCEECCCCHH
T ss_pred CCcCcEEEeeCh-HHHHHHHHhcCCccceEEEeecCHHHHHHHHHHHHHHHHHHHHhcCceEEeccccCCCCCCCchHHH
Confidence 967777777775 466555444443 67743 2222221123445567887777876653 1 2479999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 017922 146 DDASAAMKLVLAIIERR 162 (364)
Q Consensus 146 ~DA~Ata~L~~~~le~g 162 (364)
-|+.+ |...+...
T Consensus 206 LDCIM----F~aa~~G~ 218 (243)
T 3q7c_A 206 MDCIM----FDAAVSGG 218 (243)
T ss_dssp HHHHH----HHHHHHTS
T ss_pred HHHHH----HHHHhcCC
Confidence 99976 55555443
No 252
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=70.22 E-value=3.3 Score=33.74 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=26.6
Q ss_pred ceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcce
Q 017922 218 NYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 252 (364)
Q Consensus 218 ~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~qk 252 (364)
.++++|.|.++++|..|++.|.|+.- .||+-.
T Consensus 71 ~G~~FV~F~~~e~A~~Ai~~LnGr~f---~GR~i~ 102 (118)
T 3ue2_A 71 IVKIFVEFSIASETHKAIQALNGRWF---AGRKVV 102 (118)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEE---TTEECE
T ss_pred eEEEEEEECCHHHHHHHHHHHCCCEE---CCcEEE
Confidence 58999999999999999999999853 355443
No 253
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=66.61 E-value=6.5 Score=24.69 Aligned_cols=28 Identities=39% Similarity=0.519 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHh
Q 017922 324 VIERLKRELREKDFQISMQDKNISDLKKKVAEMKD 358 (364)
Q Consensus 324 ~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (364)
||-+|||+ |.++.|-|..||-+...+||
T Consensus 3 eiaalkqe-------iaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQE-------IAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH-------HHHHHHHHHHHHHHHHHHHc
Confidence 67788875 44566666666666665554
No 254
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=61.30 E-value=6.2 Score=39.77 Aligned_cols=148 Identities=18% Similarity=0.178 Sum_probs=96.6
Q ss_pred CCCcEEEEEEeccCCCCCcccEEEEEEEEcCCcEEEEEEEcCCC--cccccccccCCCChhhhcCCCCCHHHHHHHHHHh
Q 017922 2 TSNIMYAVDCEMVLCEDGSEGLVRLCVVDRNLKVTIDELVKPEK--AVADYRSEITGLTADDLVGVTCSLAEIQKRMKKL 79 (364)
Q Consensus 2 ~~~~~ValD~ETTGl~~g~~~Ii~V~vVd~~G~vi~d~lVkP~~--~I~d~~t~itGIT~e~L~~ap~~~~eV~~el~~f 79 (364)
.|+.-..||+|-.-.+ -+++++.-.+..-.++.|=.|.. .+.+...--|||.-.||.++. | -+...+...
T Consensus 389 dp~~ttWiDIEG~p~D-----PVE~AiyQP~~g~YiHcyR~P~D~K~FK~~SkysHGillkDl~~aq-P--GL~S~vi~~ 460 (577)
T 3mwp_A 389 DPNAKTWMDIEGRPED-----PVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQ-P--GLTSAVIDA 460 (577)
T ss_dssp CTTSCEEEEEESCTTS-----CSEEEEEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGGGBC-T--THHHHHHHH
T ss_pred CCCCCeEEecCCCCCC-----CeEEEEeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcC-C--chHHHHHHh
Confidence 3556688999976433 46788888744447788888864 556667778999999999987 3 466778888
Q ss_pred hcCCCEEEEechhhHHHHHcccCCC----ccchH---HHhhhhcCCCCccHHHHHHHHhCCccCCC-------CCCCChH
Q 017922 80 LSNGTILVGHSLNNDLEVLKLDHPR----VIDTS---LIFKYVDEYRRPSLYNLCKSVLGYEIRKK-------GTPHNCL 145 (364)
Q Consensus 80 l~~~~iLVGHn~~fDl~fL~~~~~~----vIDT~---~L~r~~~~~~~~sL~~L~k~~Lgi~i~~~-------~~~H~Al 145 (364)
+..+-||-+... -|++-|-..|.| +||.. .-+|.+-..-+-....||+.+-|+-+... ..+|-||
T Consensus 461 LP~~mV~T~QGs-dDI~kLld~hGR~DiK~iDV~lt~eqaR~fEd~VW~~~~~LC~~H~GiVv~kKKkg~~~~~~pHCAL 539 (577)
T 3mwp_A 461 LPRNMVITCQGS-DDIRKLLESQGRKDIKLIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVVEKKKRGGKEEITPHCAL 539 (577)
T ss_dssp SCTTCEEEESSH-HHHHHHHHHTTCTTCEEEECCCCHHHHTTTHHHHHHHHGGGCCCBCSCEEECC-----EEECCCCHH
T ss_pred CCcCcEEEeeCh-HHHHHHHHhcCCccceEEEeecCHHHHHHHHHHHHHHHHHHHHhcCceEEecccCCCCCCCCchHHH
Confidence 866777777765 466655444543 67743 22222111233455677877777765431 2479999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 017922 146 DDASAAMKLVLAIIERR 162 (364)
Q Consensus 146 ~DA~Ata~L~~~~le~g 162 (364)
-|+.+ |...+...
T Consensus 540 lDCiM----F~a~~~G~ 552 (577)
T 3mwp_A 540 MDCIM----FDAAVSGG 552 (577)
T ss_dssp HHHHH----HHHHHHTC
T ss_pred HHHHH----HHHHhcCC
Confidence 99876 55544333
No 255
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=61.22 E-value=6.5 Score=29.77 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhhccccchhhhhhhHHHHHHHHHH
Q 017922 323 KVIERLKRELREKDFQISMQDKNISDLKKKVAEM 356 (364)
Q Consensus 323 k~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (364)
.-|-+|+.+|..||.||.+|+.+|.=.-|-.|.+
T Consensus 18 ~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErL 51 (75)
T 3a7o_A 18 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERL 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHh
Confidence 3788999999999999999999887555555544
No 256
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=59.78 E-value=1.6 Score=48.41 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=52.1
Q ss_pred CCCEEEEechhhHHHHHcccC------CCccchHHHhhhhcC------------------------------------C-
Q 017922 82 NGTILVGHSLNNDLEVLKLDH------PRVIDTSLIFKYVDE------------------------------------Y- 118 (364)
Q Consensus 82 ~~~iLVGHn~~fDl~fL~~~~------~~vIDT~~L~r~~~~------------------------------------~- 118 (364)
..+++||||+.||...+.-.. -+++||+.|.-...| .
T Consensus 193 ~~rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSLHvavsG~~s~QR~~w~~~kk~k~~~~~e~~~~~~~~~~~~~~p~ 272 (1172)
T 3ikm_A 193 QEQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPA 272 (1172)
T ss_dssp SCCCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC-----------------------
T ss_pred CccEEEeCCcchhHHHHHHHHhcccCCceeeechhhhhhccccchhhHHHHHHhhhhcccchhhHHHHhhhccccccCcc
Confidence 468999999999998887642 258999876311100 0
Q ss_pred ----------CCc--cHHHHHHHHhCC-ccCCC-------CCCC-----------ChHHHHHHHHHHHHHHH
Q 017922 119 ----------RRP--SLYNLCKSVLGY-EIRKK-------GTPH-----------NCLDDASAAMKLVLAII 159 (364)
Q Consensus 119 ----------~~~--sL~~L~k~~Lgi-~i~~~-------~~~H-----------~Al~DA~Ata~L~~~~l 159 (364)
... ||.++++-|+|+ ++... +..- -+..|+.||.+||..++
T Consensus 273 ~~~~~W~~~sS~N~~SL~dV~~lhcg~~~ldK~~Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~ 344 (1172)
T 3ikm_A 273 ISSWDWLDISSVNSNSLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQL 344 (1172)
T ss_dssp ---CCCCCCCCTTSHHHHHHHTCSSCSCS--SCSSSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcccccCCCcCCHHHHHHHhCCCcccChhhHhhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 124 899999888887 55431 1111 15689999999998776
No 257
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=56.54 E-value=8.8 Score=30.98 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=37.6
Q ss_pred CCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhc
Q 017922 186 RIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVK 239 (364)
Q Consensus 186 ~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~ 239 (364)
..|+.+...+|..+|...-.+.|+=.. -++|+|+|++++.|+.|.+.+.
T Consensus 22 ~FP~ewKt~DI~~lFs~fggv~I~Wid-----DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 22 TFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp ECCTTCCHHHHHHHHTTTCSCCCEEEE-----TTEEEEECSCHHHHHHHHHHHH
T ss_pred eCChhhhhHHHHHHhhccCCEEEEEEc-----CCeEEEEecCHHHHHHHHHhcc
Confidence 789999999999998764333322111 2599999999999999999864
No 258
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=46.97 E-value=11 Score=30.42 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=39.2
Q ss_pred CCCCCCCHHHhcccCCCCceeeeccccccCCCceeEEEEeCCHHHHHHHHHhhc
Q 017922 186 RIPTKVPSEELHGVIPGDFTIEAKAVKRIRGDNYAAFAIFSSPQEANQAFENVK 239 (364)
Q Consensus 186 ~iP~~l~~eel~~~~~~~~~i~~~~~~~~~g~~~~~~~~f~s~~~~~~af~~l~ 239 (364)
..|+.|...+|..+|...-.+.|+=.. -++|+|+|++++.|..|...+.
T Consensus 12 ~FP~ewKt~Di~~lFs~fggv~I~Wid-----DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 12 TFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp ECCTTCCHHHHHHHTTTSEEEEEEEEE-----TTEEEEEEEEECHHHHHHHHHT
T ss_pred eCChhhhhHHHHHHHhccCCEEEEEEc-----CCeEEEEecCHHHHHHHHHhcc
Confidence 679999999999999875455443222 2599999999999999999874
No 259
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=45.66 E-value=23 Score=29.94 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHhh
Q 017922 320 DHLKVIERLKRELREKDFQISMQDKNISDLKKKVAEMKDQ 359 (364)
Q Consensus 320 ~h~k~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (364)
+-.|||..||.+|.+-.-++-.+.+-+..|++++.+...+
T Consensus 86 ~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 86 NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666666555443
No 260
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=43.69 E-value=13 Score=27.89 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=25.4
Q ss_pred HHHHHHhhhccccchhhhhhhHHHHHHHHH
Q 017922 326 ERLKRELREKDFQISMQDKNISDLKKKVAE 355 (364)
Q Consensus 326 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (364)
..|..+|..|.-||-.|.++|-+|.-||.+
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiK 35 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEK 35 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888999999999999999888877765
No 261
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=38.62 E-value=22 Score=31.00 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=27.4
Q ss_pred ceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcce
Q 017922 218 NYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 252 (364)
Q Consensus 218 ~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~qk 252 (364)
.|+++|.|.+.++|..|...|.|+.- .||+-.
T Consensus 175 ~G~~fv~f~~~~~a~~a~~~l~gr~~---~gr~i~ 206 (222)
T 3dxb_A 175 IVKIFVEFSIASETHKAIQALNGRWF---AGRKVV 206 (222)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBS---SSSBCE
T ss_pred eeEEEEEECCHHHHHHHHHHhcCceE---CCeEEE
Confidence 78999999999999999999999863 466543
No 262
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=38.46 E-value=20 Score=24.23 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=24.5
Q ss_pred HHHHHHHH------hhhccccchhhhhhhHHHHHHHHHHH
Q 017922 324 VIERLKRE------LREKDFQISMQDKNISDLKKKVAEMK 357 (364)
Q Consensus 324 ~ie~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (364)
|+.+||.+ |..-+-|.+++.|-+..||.|++.+|
T Consensus 8 elqalkkegfspeelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 8 ELQALKKEGFSPEELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555544 55666678888888999998888754
No 263
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=36.92 E-value=40 Score=26.28 Aligned_cols=16 Identities=44% Similarity=0.702 Sum_probs=11.5
Q ss_pred chhhhHHHHHHHHHHh
Q 017922 317 KCEDHLKVIERLKREL 332 (364)
Q Consensus 317 ~~~~h~k~ie~~~~~~ 332 (364)
+-+.|.+||++|..+|
T Consensus 52 el~~h~~ei~~le~~i 67 (84)
T 1gmj_A 52 EISHHAKEIERLQKEI 67 (84)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3677888888877664
No 264
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=36.36 E-value=20 Score=24.33 Aligned_cols=30 Identities=43% Similarity=0.718 Sum_probs=20.3
Q ss_pred HHHHHHH-hhhccccchhhhhhhHHHHHHHHH
Q 017922 325 IERLKRE-LREKDFQISMQDKNISDLKKKVAE 355 (364)
Q Consensus 325 ie~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 355 (364)
=|-||.. |-+||. |.-+.|-|++|.+|.+|
T Consensus 19 netlkkknlhkkdl-iaylekeianlrkkiee 49 (49)
T 3he5_A 19 NETLKKKNLHKKDL-IAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC-
T ss_pred cHHHHHhcccHHHH-HHHHHHHHHHHHHHhcC
Confidence 3445544 555554 77888999999988764
No 265
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=36.32 E-value=14 Score=22.93 Aligned_cols=11 Identities=45% Similarity=0.658 Sum_probs=8.2
Q ss_pred hhhhHHHHHHH
Q 017922 318 CEDHLKVIERL 328 (364)
Q Consensus 318 ~~~h~k~ie~~ 328 (364)
+-.-+||||||
T Consensus 17 AAqAL~eIERL 27 (29)
T 1xnl_A 17 AAQALREIERL 27 (29)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34568999987
No 266
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=35.60 E-value=28 Score=31.10 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHh
Q 017922 322 LKVIERLKRELREKDFQISMQDKNISDLKKKVAEMKD 358 (364)
Q Consensus 322 ~k~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (364)
.-|..+|+|+|..|+=||+.+.+=+.+|+......+.
T Consensus 26 ~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~ 62 (190)
T 4emc_A 26 VNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKT 62 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3588899999999999999988888888877755433
No 267
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=34.68 E-value=20 Score=27.86 Aligned_cols=45 Identities=27% Similarity=0.356 Sum_probs=36.0
Q ss_pred hhhhccccchhhhHHHHHHHHHHhhhccccchhhhhhhHHHHHHH
Q 017922 309 KIADTNQCKCEDHLKVIERLKRELREKDFQISMQDKNISDLKKKV 353 (364)
Q Consensus 309 ~~~~~~~~~~~~h~k~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (364)
.+|...+.--++-+.|-+.|.+++.+|+-||..+..+...|+.--
T Consensus 24 ~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 24 EVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566778899999999999999999999888888876543
No 268
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=33.32 E-value=44 Score=23.06 Aligned_cols=9 Identities=33% Similarity=0.612 Sum_probs=6.3
Q ss_pred HHHHHHHHH
Q 017922 323 KVIERLKRE 331 (364)
Q Consensus 323 k~ie~~~~~ 331 (364)
-+.|++||+
T Consensus 7 ~dle~~KqE 15 (45)
T 1use_A 7 SDLQRVKQE 15 (45)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 357788877
No 269
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=33.05 E-value=43 Score=22.92 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHH
Q 017922 322 LKVIERLKRELREKDFQISMQDKNISDLKKKVAEMK 357 (364)
Q Consensus 322 ~k~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (364)
-|.|-|||..--|-+-.-+.+.|||++|......+.
T Consensus 9 rkkiarlkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 9 RKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 367888876533323334678999999988776543
No 270
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=31.48 E-value=46 Score=28.02 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=39.4
Q ss_pred hhhhccccchhhhHH---HHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHhhh
Q 017922 309 KIADTNQCKCEDHLK---VIERLKRELREKDFQISMQDKNISDLKKKVAEMKDQK 360 (364)
Q Consensus 309 ~~~~~~~~~~~~h~k---~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (364)
.++-.|- |++.++ +++.|.+++.+++-||..+..=+.+++.++++.++..
T Consensus 60 VLaALNi--adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~ 112 (138)
T 3hnw_A 60 DMMYLNI--ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEI 112 (138)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 888877 8999999999999999888888888888888776654
No 271
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=30.33 E-value=30 Score=24.20 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=19.9
Q ss_pred hhhccccchhhhHHHHHHHHHHhhh
Q 017922 310 IADTNQCKCEDHLKVIERLKRELRE 334 (364)
Q Consensus 310 ~~~~~~~~~~~h~k~ie~~~~~~~~ 334 (364)
.+..-+..|...-.|||||+.-|++
T Consensus 19 kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 19 KIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHH
Confidence 3444566799999999999998875
No 272
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=30.14 E-value=19 Score=29.76 Aligned_cols=68 Identities=21% Similarity=0.345 Sum_probs=44.9
Q ss_pred hhcCCCCCCCCHHHhcccCCCCceeeecccccc--CCCceeEEEEeCCHHHHHHHHHhhcCCccCCCCCCcce
Q 017922 182 LFLHRIPTKVPSEELHGVIPGDFTIEAKAVKRI--RGDNYAAFAIFSSPQEANQAFENVKGNQSKDSYGRPQK 252 (364)
Q Consensus 182 l~~~~iP~~l~~eel~~~~~~~~~i~~~~~~~~--~g~~~~~~~~f~s~~~~~~af~~l~g~~~~d~~g~~qk 252 (364)
+-..+||-.++.+.+..++....+|...+-++. +..++-|.|+|.|...|-+|--.|+|..-. ||.-+
T Consensus 24 iaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~---gr~Lr 93 (117)
T 2l9w_A 24 ICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQ---GKVIR 93 (117)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEET---TEEEE
T ss_pred EEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeec---CeEEE
Confidence 445678888888888766544323322111111 334457999999999999999999998754 55544
No 273
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.89 E-value=39 Score=22.99 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=22.1
Q ss_pred HHHHHhhhccccchhhhhhhHHHHHHHHHHHhh
Q 017922 327 RLKRELREKDFQISMQDKNISDLKKKVAEMKDQ 359 (364)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (364)
.|=|++..=|-||.+-.+=|+.|++|+.++...
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555666777777788888888876543
No 274
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=26.03 E-value=40 Score=27.52 Aligned_cols=28 Identities=7% Similarity=0.017 Sum_probs=23.4
Q ss_pred CCceeEEEEeCCHHHHHHHHHhhcCCcc
Q 017922 216 GDNYAAFAIFSSPQEANQAFENVKGNQS 243 (364)
Q Consensus 216 g~~~~~~~~f~s~~~~~~af~~l~g~~~ 243 (364)
...|.++|+|.+.++|.+|.+.+.+...
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~ 38 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNG 38 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCC
Confidence 3478999999999999999988876443
No 275
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=25.51 E-value=32 Score=34.19 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=12.5
Q ss_pred CcEEEEEEeccCCC
Q 017922 4 NIMYAVDCEMVLCE 17 (364)
Q Consensus 4 ~~~ValD~ETTGl~ 17 (364)
-+|||||+|++|+.
T Consensus 22 ~~fVAiD~Ef~Gi~ 35 (430)
T 2a1r_A 22 ADFFAIDGEFSGIS 35 (430)
T ss_dssp CSEEEEEEEESCSC
T ss_pred CCEEEEeeeecccc
Confidence 47999999999984
No 276
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=24.93 E-value=35 Score=20.66 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=16.1
Q ss_pred cccchhhhhhhHHHHHHHHHHHh
Q 017922 336 DFQISMQDKNISDLKKKVAEMKD 358 (364)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~ 358 (364)
+||-.++..-|+.||.|...+|+
T Consensus 6 efendaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 6 EFENDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhccHHHHHHHHHHHHHHHHhcC
Confidence 46666677777778877777654
No 277
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=23.12 E-value=63 Score=24.79 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=17.3
Q ss_pred cccchhhhhhhHHHHHHHHHHHh
Q 017922 336 DFQISMQDKNISDLKKKVAEMKD 358 (364)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~ 358 (364)
+-|-..+++.|..|+.|.+||.+
T Consensus 52 ~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 52 DQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455678888889998888865
No 278
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=23.12 E-value=35 Score=22.21 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHhhhccccch
Q 017922 319 EDHLKVIERLKRELREKDFQIS 340 (364)
Q Consensus 319 ~~h~k~ie~~~~~~~~~~~~~~ 340 (364)
-.|.++|+.||.|-..=+-||.
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHHHH
Confidence 4799999999998444343443
No 279
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=22.67 E-value=30 Score=26.39 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=30.1
Q ss_pred chhhhhHHhhhhccccchhhhHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHH
Q 017922 301 IKWINEEEKIADTNQCKCEDHLKVIERLKRELREKDFQISMQDKNISDLKKKVAEMK 357 (364)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~h~k~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (364)
++.-+++..+.-.+|. .-||.||+.+.+-..+|..+..-+.-|..|+.++.
T Consensus 12 le~Ri~~LE~klAfqE------~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 12 LEARLVELETRLSFQE------QALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555544444552 24889999887777777766666666666666544
No 280
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.51 E-value=22 Score=21.52 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=12.8
Q ss_pred HHHHHHhhhccccchhhh
Q 017922 326 ERLKRELREKDFQISMQD 343 (364)
Q Consensus 326 e~~~~~~~~~~~~~~~~~ 343 (364)
-||||++..-++||.++.
T Consensus 10 arlkqeiaaleyeiaale 27 (28)
T 3ra3_B 10 ARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 467777777778777653
No 281
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=22.29 E-value=36 Score=26.97 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhccccch
Q 017922 322 LKVIERLKRELREKDFQIS 340 (364)
Q Consensus 322 ~k~ie~~~~~~~~~~~~~~ 340 (364)
=.||-|||.+|.+|+-+++
T Consensus 74 EeEI~rLr~eLe~r~~q~~ 92 (92)
T 3vp9_A 74 EEEIKHLKLGLEQRDHQIA 92 (92)
T ss_dssp HHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHcCCCCC
Confidence 4589999999999987763
No 282
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=22.18 E-value=35 Score=34.59 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=12.5
Q ss_pred CcEEEEEEeccCCC
Q 017922 4 NIMYAVDCEMVLCE 17 (364)
Q Consensus 4 ~~~ValD~ETTGl~ 17 (364)
.+|||||+|++|+.
T Consensus 24 ~~fvaiD~Ef~Gi~ 37 (507)
T 3d45_A 24 ADFFAIDGEFSGIS 37 (507)
T ss_dssp CSEEEEEEEESCSC
T ss_pred CCEEEEeeeccCcC
Confidence 47999999999984
No 283
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=20.97 E-value=56 Score=23.47 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=23.4
Q ss_pred cchhhhhHH-hhhhccccchhhhHHHHHHHHHHhhh
Q 017922 300 NIKWINEEE-KIADTNQCKCEDHLKVIERLKRELRE 334 (364)
Q Consensus 300 ~~~~~~~~~-~~~~~~~~~~~~h~k~ie~~~~~~~~ 334 (364)
|++++++.. ..+..-..+|-.+=.|||||+.-|++
T Consensus 15 kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 15 RLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555433 22333345699999999999998875
Done!