BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017924
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 122/212 (57%), Gaps = 6/212 (2%)
Query: 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI 74
P N + +VL+G+TG GKSATGNSILGRK F + + +TK CE +++ K+ ++V V+
Sbjct: 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK 134
DTPG+FD + KEI++C+ + G HA L+V + R+++EE A ++ FG+
Sbjct: 84 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKXFGE 142
Query: 135 NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGT 194
+ I++FT DDL D L D+L E P+ ++++ + +R +NK A+
Sbjct: 143 RARSFXILIFTRKDDLGD--TNLHDYL-REAPEDIQDLXDIFGDRYCALNNKATG-AEQE 198
Query: 195 EQVRQLLSLVNSVIVQNGGQPYTDELKRGATE 226
Q QLL L+ V+ +N YT+ + A E
Sbjct: 199 AQRAQLLGLIQRVVRENKEGCYTNRXYQRAEE 230
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 133/233 (57%), Gaps = 13/233 (5%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
R ++L+GRTG GKSATGNSILG++ F + G++ VT+ C + D V V+DTP +
Sbjct: 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDI 80
Query: 80 FDLSAGSEFVG-KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
F G +E C ++ G HA L+V + RF+ +++ AV ++ ++FG++V
Sbjct: 81 FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVLK 139
Query: 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE--- 195
+M++VFT +DL +L D++ + + L+E++ C R FDN+ A G E
Sbjct: 140 WMVIVFTRKEDLAG--GSLHDYVSNTENRALRELVAECGGRVCAFDNR----ATGREQEA 193
Query: 196 QVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKL 248
QV QLL +V +++++ G Y++E+ A LR E + L+ ++R +++
Sbjct: 194 QVVQLLGMVEGLVLEHKGAHYSNEVYELAQVLRWAGPE-ERLRRVAERVAARV 245
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 119/215 (55%), Gaps = 9/215 (4%)
Query: 10 WKPTS----PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
W P + S E ++L+G+TG GKSA GNSIL ++AF++ GS +TKTC
Sbjct: 9 WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
+ ++V +IDTP +F E + KE+ +C ++ G H L+V + R++ +++ A
Sbjct: 69 GNREIV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAA 126
Query: 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
R+ +FG++ + IV+FT +DL +L D++ K L +++ C R F+N
Sbjct: 127 QRVKEIFGEDAMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRICAFNN 184
Query: 186 KTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
+ + + +QV++L+ + ++++ G YT+ L
Sbjct: 185 RAEGSNQ-DDQVKELMDCIEDLLMEKNGDHYTNGL 218
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 116/205 (56%), Gaps = 5/205 (2%)
Query: 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVID 75
S E ++L+G+TG GKSA GNSIL ++AF++ GS +TKTC + ++V +ID
Sbjct: 2 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN 135
TP +F E + KE+ +C ++ G H L+V + R++ +++ A R+ +FG++
Sbjct: 61 TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGED 119
Query: 136 VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE 195
+ IV+FT +DL +L D++ K L +++ C R F+N+ + + +
Sbjct: 120 AMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQ-DD 176
Query: 196 QVRQLLSLVNSVIVQNGGQPYTDEL 220
QV++L+ + ++++ G YT+ L
Sbjct: 177 QVKELMDCIEDLLMEKNGDHYTNGL 201
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 115/202 (56%), Gaps = 5/202 (2%)
Query: 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
E ++L+G+TG GKSA GNSIL ++AF++ GS +TKTC + ++V +IDTP
Sbjct: 2 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPD 60
Query: 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
+F E + KE+ +C ++ G H L+V + R++ +++ A R+ +FG++
Sbjct: 61 MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMG 119
Query: 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVR 198
+ IV+FT +DL +L D++ K L +++ C R F+N+ + + +QV+
Sbjct: 120 HTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQ-DDQVK 176
Query: 199 QLLSLVNSVIVQNGGQPYTDEL 220
+L+ + ++++ G YT+ L
Sbjct: 177 ELMDCIEDLLMEKNGDHYTNGL 198
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 115/215 (53%), Gaps = 9/215 (4%)
Query: 10 WKPTS----PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
W P + S E ++L+G+TG GKSA GNSIL ++AF++ GS +TKTC
Sbjct: 9 WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
+ ++V +IDTP F E + KE+ +C ++ G H L+V + R++ +++ A
Sbjct: 69 GNREIV-IIDTPDXFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAA 126
Query: 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
R+ +FG++ + IV+FT +DL +L D+ K L +++ C R F+N
Sbjct: 127 QRVKEIFGEDAXGHTIVLFTHKEDLNG--GSLXDYXHDSDNKALSKLVAACGGRICAFNN 184
Query: 186 KTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
+ + + +QV++L + ++ + G YT+ L
Sbjct: 185 RAEGSNQ-DDQVKELXDCIEDLLXEKNGDHYTNGL 218
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 9/155 (5%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
TV++LG+ G GKS+T NS++G + + S + + + T+ G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81 DLSAGSEFVGKEIVKCLG--MAKDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVF 137
+ AG +V + ++ + + I L V + R + ++ V + FGK ++
Sbjct: 96 E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172
++V T E + E F + LK I
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDELLKTI 186
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 9/155 (5%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
TV++LG+ G GKS+T NS++G + + S + + + T+ G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81 DLSAGSEFVGKEIVKCLG--MAKDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVF 137
+ AG +V + ++ + + I L V + R + ++ V + FGK ++
Sbjct: 96 E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172
++V T E + E F LK I
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTI 186
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
T++++G+ G GKS+T NSI+G + S S + + + + G +N+IDTPGL
Sbjct: 41 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS--RAGFTLNIIDTPGLI 98
Query: 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVFDY 139
+ ++ + I+K + K I L V + R ++ + + FGK +++
Sbjct: 99 EGGYIND-MALNIIKSFLLDKT-IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK 156
Query: 140 MIVVFT 145
IV T
Sbjct: 157 AIVALT 162
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
TV++LG+ G GKS+T NS++G + + S + + + T+ G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81 D 81
+
Sbjct: 96 E 96
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
TV++LG+ G GKS+T NS++G + + S + + + T+ G +N+IDTPGL
Sbjct: 37 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 94
Query: 81 D 81
+
Sbjct: 95 E 95
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
T+++ G+ G GKS+T NSI+G + S S + + + + G +N+IDTPGL
Sbjct: 41 TILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRS--RAGFTLNIIDTPGLI 98
Query: 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVFDY 139
+ ++ I+K + K I L V + R ++ + + FGK +++
Sbjct: 99 EGGYIND-XALNIIKSFLLDKT-IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK 156
Query: 140 MIVVFT 145
IV T
Sbjct: 157 AIVALT 162
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGL 79
V ++G+ GKS N++LG K S K +L +G Q+V +DTPGL
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLR---GILTEGRRQIV-FVDTPGL 65
Query: 80 F-DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK 134
+ A EF+ +E+ + L ++A + V + + + E+E L L GK
Sbjct: 66 HKPMDALGEFMDQEVYEALA----DVNAVVWVVDLRHPPTPEDELVARALKPLVGK 117
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
VV+ GR GKS+ N++ GR+A + +G T+ ++ + DG +++IDT GL +
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHIIDTAGLRE 67
Query: 82 LSAGSEFVGKE 92
S E +G E
Sbjct: 68 ASDEVERIGIE 78
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
VV+ GR GKS+ N++ GR+A + +G T+ ++ + DG +++IDT GL +
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHIIDTAGLRE 64
Query: 82 LSAGSEFVGKE 92
S E +G E
Sbjct: 65 ASDEVERIGIE 75
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
Length = 172
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
VV+ GR GKS+ N++ GR+A + +G T+ ++ + DG +++IDT GL +
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGXPLHIIDTAGLRE 64
Query: 82 LSAGSEFVGKE 92
S E +G E
Sbjct: 65 ASDEVERIGIE 75
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI 74
P G + L GR+ GKS+ NS++ RK ++ G T+T ++ D ++ +
Sbjct: 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF--YIINDE--LHFV 74
Query: 75 DTPG 78
D PG
Sbjct: 75 DVPG 78
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 22/89 (24%)
Query: 239 EYSKREISKLMGQMQESYEDRIKR-----------MAEMVESGLKET------TTRLEQQ 281
E+S E +L+G +QES D I+R +A MVE+ L +T + +LE +
Sbjct: 194 EFSGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGE 253
Query: 282 LAKEQAA-----RLRAEEVAQLAEMKLKD 305
E A RL + V ++ E L D
Sbjct: 254 FGHEDTAFGVPVRLGSNGVEEIVEWDLDD 282
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 22/89 (24%)
Query: 239 EYSKREISKLMGQMQESYEDRIKR-----------MAEMVESGLKET------TTRLEQQ 281
E+S E +L+G +QES D I+R +A MVE+ L +T + +LE +
Sbjct: 195 EFSGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGE 254
Query: 282 LAKEQAA-----RLRAEEVAQLAEMKLKD 305
E A RL + V ++ E L D
Sbjct: 255 FGHEDTAFGVPVRLGSNGVEEIVEWDLDD 283
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
pdb|2HLP|B Chain B, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
Length = 303
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 22/89 (24%)
Query: 239 EYSKREISKLMGQMQESYEDRIKR-----------MAEMVESGLKET------TTRLEQQ 281
E+S E +L+G +QES D I+R +A MVE+ L +T + +LE +
Sbjct: 194 EFSGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGRVLPASVKLEGE 253
Query: 282 LAKEQAA-----RLRAEEVAQLAEMKLKD 305
E A RL + V ++ E L D
Sbjct: 254 FGHEDTAFGVPVRLGSNGVEEIVEWDLDD 282
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLF 80
V L G GK++ N++ G K + A+ GVT E K V G +N+ID PG +
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANW--PGVT--VEKKEGVFTYKGYTINLIDLPGTY 63
Query: 81 DLSAGS 86
L S
Sbjct: 64 SLGYSS 69
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLF 80
V L G GK++ N++ G K + A+ GVT E K V G +N+ID PG +
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANW--PGVT--VEKKEGVFTYKGYTINLIDLPGTY 63
Query: 81 DLSAGS 86
L S
Sbjct: 64 SLGYSS 69
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA--SAGSSGVTKTCEMKTT--VLKDGQV---V 71
E T++++G +G GKS NS+ + S + KT +++ + ++K+G V +
Sbjct: 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 90
Query: 72 NVIDTPGLFD 81
++DTPG D
Sbjct: 91 TIVDTPGFGD 100
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA--SAGSSGVTKTCEMKTT--VLKDGQV- 70
S E T++++G +G GKS NS+ + S + KT +++ + ++K+G V
Sbjct: 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQ 64
Query: 71 --VNVIDTPGLFD 81
+ ++DTPG D
Sbjct: 65 LLLTIVDTPGFGD 77
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Query: 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVV 71
P SP V ++G +GK+ + + RK A+ + G+T+ L G+ +
Sbjct: 2 PRSP-----VVTIMGHVDHGKTTLLDKL--RKTQVAAMEAGGITQHIGAFLVSLPSGEKI 54
Query: 72 NVIDTPGLFDLSA----GSEFVGKEIVKCLGMAKDGI 104
+DTPG SA G++ +IV + A DG+
Sbjct: 55 TFLDTPGHAAFSAMRARGTQVT--DIVILVVAADDGV 89
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 30/143 (20%)
Query: 22 VVLLGRTGNGKSATGNSILGRK---AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
V++LG +G GK++ N + +K +KA+ G+ +TK V+ D ++V T
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK------EVMVDDRLV----TMQ 60
Query: 79 LFDLSAGSEFVGKEIVKCLGMA-KDGIHAFLVVFSVT--NRF----SQEEETAVHRLPNL 131
++D + G+E + LG+A G ++VF VT N F S +E + P
Sbjct: 61 IWDTA------GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASP-- 112
Query: 132 FGKNVFDYMIVVFTGGDDLEDHE 154
++ ++ VV DLE+ +
Sbjct: 113 --RDPENFPFVVLGNKIDLENRQ 133
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 67/180 (37%), Gaps = 35/180 (19%)
Query: 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS----------------SGVTK 56
T+P N R + + GK+ T +L G G+T
Sbjct: 7 TTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITI 66
Query: 57 TCEMKTTVLK------DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVV 110
T TT K D VNVIDTPG D + E+ + L + + +VV
Sbjct: 67 TSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTI-------EVERSLRV----LDGAVVV 115
Query: 111 FSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170
F T+ + ET V R N +G Y+ + G + + ++ LGH P P++
Sbjct: 116 FCGTSGVEPQSET-VWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGH-TPVPVQ 173
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 17 NGERTVVLLGRTGNGKSATGNSI---LGRKAF 45
+GER V LLG TG GK+ T + LGR A
Sbjct: 27 DGERFVTLLGATGTGKTVTMAKVIEALGRPAL 58
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 34/145 (23%)
Query: 22 VVLLGRTGNGKSATGNSILGRK---AFKASAGSSGVTKTCEMKTTVLKDGQVVN--VIDT 76
V++LG +G GK++ N + +K +KA+ G+ +TK V+ D ++V + DT
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK------EVMVDDRLVTMQIWDT 64
Query: 77 PGLFDLSAGSEFVGKEIVKCLGMA-KDGIHAFLVVFSVT--NRF----SQEEETAVHRLP 129
GL E + LG+A G ++VF VT N F S +E + P
Sbjct: 65 AGL------------ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASP 112
Query: 130 NLFGKNVFDYMIVVFTGGDDLEDHE 154
++ ++ VV DLE+ +
Sbjct: 113 ----RDPENFPFVVLGNKIDLENRQ 133
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 17 NGERTVVLLGRTGNGKSATGNSI---LGRKAF 45
+GER V LLG TG GK+ T + LGR A
Sbjct: 26 DGERFVTLLGATGTGKTVTMAKVIEALGRPAL 57
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA--SAGSSGVTKTCEMKTT--VLKDGQV---V 71
E T++++G +G GKS NS+ + S + KT +++ + ++K+G V +
Sbjct: 3 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 62
Query: 72 NVIDTPGLFD 81
++DTPG D
Sbjct: 63 TIVDTPGFGD 72
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
V ++G+ GKS N++LG K S +G T+ + + + + +DTPG+++
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISP-KAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 70
Query: 82 LSAGSEFVGKEIVKC 96
S+ +G +V+
Sbjct: 71 -PKKSDVLGHSMVEI 84
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The
3' End Of 16s Rrna
Length = 308
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
V ++G+ GKS N++LG K S +G T+ + + + + +DTPG+++
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISP-KAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71
Query: 82 LSAGSEFVGKEIVKC 96
S+ +G +V+
Sbjct: 72 -PKKSDVLGHSMVEI 85
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 105 HAFLVVFSVTNRFSQEEETAVHRL 128
HAF++VFSVT++ S EE +++L
Sbjct: 81 HAFILVFSVTSKQSLEELGPIYKL 104
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob
Iron Iransporter
Length = 168
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLF 80
V L G GK++ N++ G K + A+ GVT E K V G +N+ID PG +
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANW--PGVT--VEKKEGVFTYKGYTINLIDLPGTY 63
Query: 81 DLSAGS 86
L S
Sbjct: 64 SLGYSS 69
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 30/143 (20%)
Query: 22 VVLLGRTGNGKSATGNSILGRK---AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
V++LG +G GK++ N + +K +KA+ G+ +TK V+ D ++V T
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK------EVMVDDRLV----TMQ 60
Query: 79 LFDLSAGSEFVGKEIVKCLGMA-KDGIHAFLVVFSVT--NRF----SQEEETAVHRLPNL 131
++D + G+E + LG+A G ++VF VT N F S +E + P
Sbjct: 61 IWDTA------GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASP-- 112
Query: 132 FGKNVFDYMIVVFTGGDDLEDHE 154
++ ++ VV DLE+ +
Sbjct: 113 --RDPENFPFVVLGNKIDLENRQ 133
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
TV+++GR GKS N ++ +K KA GVT+ ++ TV G+ ++DT G+
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKK--KAIVEDEEGVTRD-PVQDTVEWYGKTFKLVDTCGV 59
Query: 80 FD 81
FD
Sbjct: 60 FD 61
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT---KTCEMKTTVLKDGQVVNVIDTPG 78
+ L+G GKS N++ G + + GVT K E + +G+ V+D PG
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFEY----NGEKFKVVDLPG 63
Query: 79 LFDLSAGS 86
++ L+A S
Sbjct: 64 VYSLTANS 71
>pdb|3U4G|A Chain A, The Structure Of Cobt From Pyrococcus Horikoshii
Length = 337
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD- 81
+++G + G + T +IL ++A S+ E+K V+K+G I+ GL D
Sbjct: 138 IVIGESTPGGTTTAQAILWALGYEAKTSSASPENPQELKEKVIKEGFKRVGIEKGGLKDK 197
Query: 82 -LSAGSEFVGKEIVKCLGMA 100
L A EF I LG++
Sbjct: 198 PLEALKEFGDPXIATVLGLS 217
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI--DTPGL 79
V + G TG+GKS+ N++ G + A +GV + M+ K + NV+ D PG+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPGI 130
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT---KTCEMKTTVLKDGQVVNVIDTPG 78
+ L+G GKS N++ G + + GVT K E + +G+ V+D PG
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY----NGEKFKVVDLPG 59
Query: 79 LFDLSAGS 86
++ L+A S
Sbjct: 60 VYSLTANS 67
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI--DTPGL 79
V + G TG+GKS+ N++ G + A +GV + M+ K + NV+ D PG+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPGI 130
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a
Mutant Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a
Mutant Bound To Mgdp
Length = 272
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
+ L+G +GK++ N I G + GVT E K+ ++K + + + D PG++
Sbjct: 6 IALIGNPASGKTSLFNLITGHN--QRVGNWPGVT--VERKSGLVKKNKDLEIQDLPGIYS 61
Query: 82 LSAGS 86
+S S
Sbjct: 62 MSPYS 66
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT---KTCEMKTTVLKDGQVVNVIDTPG 78
+ L+G GKS N++ G + + GVT K E + +G+ V+D PG
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY----NGEKFKVVDLPG 59
Query: 79 LFDLSAGS 86
++ L+A S
Sbjct: 60 VYSLTANS 67
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI--DTPGL 79
V + G TG+GKS+ N++ G + A +GV + M+ K + NV+ D PG+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPGI 130
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT---KTCEMKTTVLKDGQVVNVIDTPG 78
+ L+G GKS N++ G + + GVT K E + +G+ V+D PG
Sbjct: 7 IALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY----NGEKFKVVDLPG 60
Query: 79 LFDLSAGS 86
++ L+A S
Sbjct: 61 VYSLTANS 68
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI--DTPGL 79
V + G TG+GKS+ N++ G + A +GV + M+ K + NV+ D PG+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPGI 130
>pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
Length = 349
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
+S EFV +++CLG +K VF N F+ + ++ N F K V DY
Sbjct: 280 MSQYIEFVADRLLECLGCSK--------VFHSKNPFNWMDLISLQGKTNFFEKRVADY 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,219,943
Number of Sequences: 62578
Number of extensions: 375502
Number of successful extensions: 1118
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1069
Number of HSP's gapped (non-prelim): 77
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)