Query 017924
Match_columns 363
No_of_seqs 286 out of 3600
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 04:36:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04548 AIG1: AIG1 family; I 100.0 7.4E-33 1.6E-37 226.9 18.0 204 20-227 1-204 (212)
2 cd01852 AIG1 AIG1 (avrRpt2-ind 100.0 6.9E-31 1.5E-35 213.7 21.7 195 20-220 1-195 (196)
3 COG1159 Era GTPase [General fu 99.9 1.4E-23 3.1E-28 171.8 16.4 178 19-222 6-184 (298)
4 TIGR00993 3a0901s04IAP86 chlor 99.9 3.6E-20 7.8E-25 167.6 18.8 160 20-184 119-287 (763)
5 TIGR00991 3a0901s02IAP34 GTP-b 99.9 3.8E-20 8.2E-25 155.5 17.0 155 17-176 36-191 (313)
6 TIGR00436 era GTP-binding prot 99.8 4.8E-19 1E-23 151.1 16.4 174 20-220 1-174 (270)
7 cd01853 Toc34_like Toc34-like 99.8 1.3E-18 2.7E-23 145.0 15.6 132 17-152 29-164 (249)
8 PRK00089 era GTPase Era; Revie 99.8 3.4E-18 7.3E-23 148.1 17.7 176 19-219 5-180 (292)
9 PF02421 FeoB_N: Ferrous iron 99.8 2.5E-18 5.5E-23 131.2 12.8 156 20-204 1-156 (156)
10 COG1160 Predicted GTPases [Gen 99.8 1.6E-17 3.5E-22 144.3 16.0 176 19-212 178-354 (444)
11 COG1160 Predicted GTPases [Gen 99.8 1.2E-17 2.7E-22 145.0 15.0 160 20-208 4-164 (444)
12 PRK15494 era GTPase Era; Provi 99.8 1.6E-17 3.5E-22 145.5 15.6 175 19-221 52-227 (339)
13 COG0486 ThdF Predicted GTPase 99.7 3.8E-16 8.3E-21 136.2 19.8 165 16-211 214-378 (454)
14 COG0218 Predicted GTPase [Gene 99.7 8E-16 1.7E-20 119.8 18.2 171 18-209 23-197 (200)
15 PRK00093 GTP-binding protein D 99.7 1.4E-15 3E-20 139.4 21.2 174 18-210 172-345 (435)
16 PF01926 MMR_HSR1: 50S ribosom 99.7 2.7E-16 5.9E-21 116.6 13.2 116 21-146 1-116 (116)
17 cd04163 Era Era subfamily. Er 99.7 1E-15 2.2E-20 121.6 16.8 165 19-207 3-167 (168)
18 cd04171 SelB SelB subfamily. 99.7 1.3E-15 2.9E-20 120.5 17.1 160 21-206 2-163 (164)
19 TIGR03594 GTPase_EngA ribosome 99.7 2.5E-15 5.4E-20 137.6 20.6 174 19-210 172-345 (429)
20 PRK12298 obgE GTPase CgtA; Rev 99.7 2.7E-15 5.9E-20 133.1 19.7 177 21-220 161-343 (390)
21 COG5019 CDC3 Septin family pro 99.7 3.8E-14 8.3E-19 119.8 24.7 151 19-182 23-200 (373)
22 cd01898 Obg Obg subfamily. Th 99.7 1.3E-15 2.7E-20 121.5 15.2 164 21-206 2-168 (170)
23 cd01895 EngA2 EngA2 subfamily. 99.7 2.3E-15 5.1E-20 120.3 16.8 170 20-206 3-172 (174)
24 cd01888 eIF2_gamma eIF2-gamma 99.7 1.2E-15 2.6E-20 124.7 15.0 165 20-209 1-199 (203)
25 cd01897 NOG NOG1 is a nucleola 99.7 4.2E-15 9E-20 118.2 16.6 162 21-208 2-167 (168)
26 PRK00454 engB GTP-binding prot 99.7 1.1E-14 2.4E-19 118.9 19.5 169 18-209 23-194 (196)
27 COG3596 Predicted GTPase [Gene 99.7 8.2E-16 1.8E-20 124.6 12.0 175 18-209 38-222 (296)
28 cd04164 trmE TrmE (MnmE, ThdF, 99.7 3.5E-15 7.6E-20 117.2 15.3 155 19-207 1-155 (157)
29 PRK03003 GTP-binding protein D 99.7 1E-14 2.2E-19 134.1 20.5 174 18-211 210-384 (472)
30 TIGR03598 GTPase_YsxC ribosome 99.7 7.5E-15 1.6E-19 117.8 16.8 134 17-163 16-153 (179)
31 cd01850 CDC_Septin CDC/Septin. 99.7 6.2E-15 1.3E-19 125.4 16.4 153 19-186 4-185 (276)
32 cd01894 EngA1 EngA1 subfamily. 99.7 3.2E-15 6.9E-20 117.5 13.6 155 23-206 1-155 (157)
33 PF00009 GTP_EFTU: Elongation 99.7 2.9E-15 6.2E-20 121.1 13.5 165 19-208 3-186 (188)
34 cd01878 HflX HflX subfamily. 99.7 7.8E-15 1.7E-19 120.4 16.2 163 17-206 39-202 (204)
35 COG0370 FeoB Fe2+ transport sy 99.6 3.6E-14 7.8E-19 129.3 21.3 178 19-225 3-183 (653)
36 KOG2655 Septin family protein 99.6 8.2E-14 1.8E-18 118.9 21.9 155 19-186 21-200 (366)
37 PRK12299 obgE GTPase CgtA; Rev 99.6 3.1E-14 6.8E-19 123.9 19.6 167 21-210 160-329 (335)
38 PRK09866 hypothetical protein; 99.6 6.4E-13 1.4E-17 120.9 28.4 121 69-206 230-350 (741)
39 cd00881 GTP_translation_factor 99.6 5.3E-15 1.1E-19 120.0 13.7 164 21-208 1-186 (189)
40 PRK05291 trmE tRNA modificatio 99.6 5E-14 1.1E-18 128.2 21.3 158 18-210 214-371 (449)
41 TIGR03156 GTP_HflX GTP-binding 99.6 1.2E-14 2.6E-19 127.6 16.6 162 18-207 188-350 (351)
42 TIGR03594 GTPase_EngA ribosome 99.6 9.8E-15 2.1E-19 133.7 16.6 159 21-208 1-159 (429)
43 cd04104 p47_IIGP_like p47 (47- 99.6 2.7E-14 6E-19 116.1 17.3 119 20-151 2-121 (197)
44 TIGR02729 Obg_CgtA Obg family 99.6 2.6E-14 5.7E-19 124.4 17.7 165 21-208 159-328 (329)
45 PRK03003 GTP-binding protein D 99.6 1.4E-14 3E-19 133.3 16.6 160 20-208 39-198 (472)
46 PF00735 Septin: Septin; Inte 99.6 8.9E-15 1.9E-19 124.1 13.9 153 20-186 5-184 (281)
47 cd01884 EF_Tu EF-Tu subfamily. 99.6 3.7E-14 7.9E-19 114.4 16.8 118 19-152 2-133 (195)
48 cd01889 SelB_euk SelB subfamil 99.6 1.7E-14 3.6E-19 117.2 14.8 168 20-209 1-186 (192)
49 PRK09518 bifunctional cytidyla 99.6 5.2E-14 1.1E-18 135.5 20.5 173 18-210 449-622 (712)
50 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 3.1E-14 6.7E-19 113.2 15.7 161 21-208 2-165 (168)
51 PRK00093 GTP-binding protein D 99.6 2.6E-14 5.6E-19 131.0 17.1 158 20-206 2-159 (435)
52 cd04166 CysN_ATPS CysN_ATPS su 99.6 1.5E-14 3.2E-19 118.7 13.8 155 21-199 1-184 (208)
53 cd01864 Rab19 Rab19 subfamily. 99.6 4.1E-14 8.9E-19 112.1 15.9 157 20-206 4-163 (165)
54 cd01876 YihA_EngB The YihA (En 99.6 8.4E-14 1.8E-18 110.8 17.8 163 22-207 2-169 (170)
55 cd04154 Arl2 Arl2 subfamily. 99.6 2.3E-14 4.9E-19 114.5 14.4 156 15-204 10-170 (173)
56 KOG1423 Ras-like GTPase ERA [C 99.6 1.3E-14 2.8E-19 118.8 12.8 194 19-220 72-281 (379)
57 cd04160 Arfrp1 Arfrp1 subfamil 99.6 1.4E-14 3E-19 115.1 12.4 160 21-205 1-165 (167)
58 PRK12296 obgE GTPase CgtA; Rev 99.6 7.8E-14 1.7E-18 126.0 18.4 167 20-210 160-341 (500)
59 KOG3859 Septins (P-loop GTPase 99.6 5.6E-13 1.2E-17 107.7 20.5 135 20-163 43-200 (406)
60 PRK04213 GTP-binding protein; 99.6 8.1E-14 1.7E-18 114.2 15.9 168 18-210 8-193 (201)
61 PF10662 PduV-EutP: Ethanolami 99.6 1.2E-14 2.5E-19 108.4 9.7 141 20-205 2-142 (143)
62 cd01879 FeoB Ferrous iron tran 99.6 7.4E-14 1.6E-18 109.8 15.0 155 24-207 1-155 (158)
63 cd04142 RRP22 RRP22 subfamily. 99.6 1.3E-13 2.8E-18 112.0 16.8 170 20-210 1-175 (198)
64 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 6E-14 1.3E-18 110.8 14.3 160 22-204 2-161 (164)
65 cd04138 H_N_K_Ras_like H-Ras/N 99.6 9.6E-14 2.1E-18 109.6 15.5 154 20-206 2-159 (162)
66 TIGR00450 mnmE_trmE_thdF tRNA 99.6 6.8E-13 1.5E-17 120.0 22.9 123 17-151 201-324 (442)
67 cd01881 Obg_like The Obg-like 99.6 3.6E-14 7.8E-19 113.7 13.3 161 24-206 1-174 (176)
68 PRK12297 obgE GTPase CgtA; Rev 99.6 1.2E-13 2.6E-18 123.2 17.6 164 21-210 160-328 (424)
69 COG1084 Predicted GTPase [Gene 99.6 8.2E-14 1.8E-18 115.9 15.1 129 19-159 168-300 (346)
70 PRK09554 feoB ferrous iron tra 99.6 5.2E-13 1.1E-17 128.1 22.9 164 19-209 3-168 (772)
71 cd04155 Arl3 Arl3 subfamily. 99.6 4.4E-14 9.6E-19 112.9 13.1 158 18-205 13-171 (173)
72 cd04120 Rab12 Rab12 subfamily. 99.6 1.8E-13 3.9E-18 111.2 16.6 157 21-207 2-161 (202)
73 cd04159 Arl10_like Arl10-like 99.6 3E-14 6.5E-19 112.0 11.7 155 22-206 2-158 (159)
74 cd04149 Arf6 Arf6 subfamily. 99.6 5.3E-14 1.2E-18 111.5 13.0 155 19-205 9-166 (168)
75 cd04124 RabL2 RabL2 subfamily. 99.6 1.3E-13 2.9E-18 108.6 15.1 154 20-209 1-158 (161)
76 cd04121 Rab40 Rab40 subfamily. 99.6 2.9E-13 6.3E-18 108.9 17.2 160 20-211 7-169 (189)
77 cd01861 Rab6 Rab6 subfamily. 99.6 1.8E-13 3.9E-18 108.0 15.7 155 21-206 2-159 (161)
78 cd04158 ARD1 ARD1 subfamily. 99.6 6.6E-14 1.4E-18 111.3 13.3 160 21-210 1-162 (169)
79 PRK10512 selenocysteinyl-tRNA- 99.6 1.3E-13 2.9E-18 129.4 17.2 164 21-209 2-166 (614)
80 smart00175 RAB Rab subfamily o 99.6 2.7E-13 5.9E-18 107.3 16.5 158 20-208 1-161 (164)
81 cd04119 RJL RJL (RabJ-Like) su 99.6 1.4E-13 3.1E-18 109.3 15.0 160 20-207 1-165 (168)
82 cd04132 Rho4_like Rho4-like su 99.6 2E-13 4.4E-18 110.5 15.9 162 20-209 1-167 (187)
83 cd01867 Rab8_Rab10_Rab13_like 99.6 2.3E-13 5E-18 108.0 16.0 158 20-208 4-164 (167)
84 cd04145 M_R_Ras_like M-Ras/R-R 99.6 2.5E-13 5.3E-18 107.5 16.1 156 20-207 3-162 (164)
85 smart00177 ARF ARF-like small 99.6 1.4E-13 2.9E-18 110.0 14.6 158 19-207 13-172 (175)
86 PRK09518 bifunctional cytidyla 99.6 1.1E-13 2.3E-18 133.4 16.5 161 20-209 276-436 (712)
87 cd01865 Rab3 Rab3 subfamily. 99.6 2E-13 4.3E-18 108.2 15.2 158 20-208 2-162 (165)
88 TIGR00475 selB selenocysteine- 99.6 2.5E-13 5.5E-18 127.1 18.3 165 20-210 1-167 (581)
89 PTZ00133 ADP-ribosylation fact 99.6 1.3E-13 2.7E-18 110.8 14.2 160 18-208 16-177 (182)
90 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 4E-13 8.6E-18 107.0 16.8 157 20-208 3-163 (172)
91 cd04151 Arl1 Arl1 subfamily. 99.6 6.8E-14 1.5E-18 110.0 12.3 154 21-205 1-156 (158)
92 cd01893 Miro1 Miro1 subfamily. 99.6 2.6E-13 5.7E-18 107.5 15.7 158 21-208 2-163 (166)
93 cd04150 Arf1_5_like Arf1-Arf5- 99.6 9.9E-14 2.1E-18 109.0 13.0 154 21-205 2-157 (159)
94 TIGR00487 IF-2 translation ini 99.6 2.8E-13 6.2E-18 126.2 18.0 161 19-206 87-247 (587)
95 PRK11058 GTPase HflX; Provisio 99.6 2.7E-13 5.8E-18 121.9 17.2 164 20-209 198-362 (426)
96 cd04157 Arl6 Arl6 subfamily. 99.5 1.2E-13 2.6E-18 109.1 13.2 158 21-205 1-160 (162)
97 cd04140 ARHI_like ARHI subfami 99.5 2.1E-13 4.6E-18 108.0 14.6 158 20-207 2-163 (165)
98 cd04113 Rab4 Rab4 subfamily. 99.5 1.5E-13 3.3E-18 108.4 13.8 157 20-206 1-159 (161)
99 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 1.5E-13 3.3E-18 109.7 13.8 156 19-205 15-172 (174)
100 cd01868 Rab11_like Rab11-like. 99.5 3.8E-13 8.2E-18 106.6 16.0 157 20-207 4-163 (165)
101 cd04106 Rab23_lke Rab23-like s 99.5 3.6E-13 7.7E-18 106.4 15.7 154 20-206 1-160 (162)
102 cd04109 Rab28 Rab28 subfamily. 99.5 3.1E-13 6.7E-18 111.7 15.9 161 20-210 1-167 (215)
103 cd04134 Rho3 Rho3 subfamily. 99.5 3.8E-13 8.2E-18 108.9 16.0 164 20-209 1-174 (189)
104 cd04108 Rab36_Rab34 Rab34/Rab3 99.5 5.1E-13 1.1E-17 106.1 16.5 160 21-210 2-166 (170)
105 cd04156 ARLTS1 ARLTS1 subfamil 99.5 8.5E-14 1.9E-18 109.7 11.9 157 21-205 1-158 (160)
106 PLN00223 ADP-ribosylation fact 99.5 2.2E-13 4.7E-18 109.3 14.3 161 17-208 15-177 (181)
107 KOG0084 GTPase Rab1/YPT1, smal 99.5 3.8E-13 8.2E-18 103.3 14.8 162 20-211 10-174 (205)
108 cd00878 Arf_Arl Arf (ADP-ribos 99.5 1.4E-13 3E-18 108.2 13.0 155 21-205 1-156 (158)
109 cd01874 Cdc42 Cdc42 subfamily. 99.5 5.3E-13 1.1E-17 106.5 16.4 161 20-206 2-172 (175)
110 cd04112 Rab26 Rab26 subfamily. 99.5 3.9E-13 8.5E-18 109.0 15.9 162 20-211 1-165 (191)
111 KOG1547 Septin CDC10 and relat 99.5 4.3E-13 9.4E-18 106.0 15.2 152 20-184 47-224 (336)
112 cd01866 Rab2 Rab2 subfamily. 99.5 4.4E-13 9.5E-18 106.5 15.7 159 20-208 5-165 (168)
113 COG2262 HflX GTPases [General 99.5 3.5E-13 7.5E-18 115.7 15.9 167 17-210 190-357 (411)
114 TIGR02528 EutP ethanolamine ut 99.5 6.1E-14 1.3E-18 108.2 10.4 139 21-204 2-140 (142)
115 smart00178 SAR Sar1p-like memb 99.5 1.3E-13 2.8E-18 111.1 12.6 164 18-206 16-182 (184)
116 cd01860 Rab5_related Rab5-rela 99.5 3E-13 6.5E-18 106.9 14.6 156 20-207 2-161 (163)
117 PLN03071 GTP-binding nuclear p 99.5 7.6E-13 1.6E-17 109.4 17.4 158 17-209 11-172 (219)
118 cd04136 Rap_like Rap-like subf 99.5 3E-13 6.4E-18 106.9 14.5 154 20-206 2-160 (163)
119 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.5 2.1E-13 4.6E-18 109.8 13.8 162 19-208 3-169 (183)
120 cd04144 Ras2 Ras2 subfamily. 99.5 3.1E-13 6.6E-18 109.6 14.6 159 21-209 1-163 (190)
121 PRK05306 infB translation init 99.5 2E-13 4.4E-18 130.2 15.5 160 19-206 290-449 (787)
122 smart00173 RAS Ras subfamily o 99.5 3.1E-13 6.6E-18 107.0 14.2 156 21-208 2-161 (164)
123 cd04118 Rab24 Rab24 subfamily. 99.5 5.4E-13 1.2E-17 108.6 15.9 161 20-209 1-166 (193)
124 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 6.9E-13 1.5E-17 105.2 16.2 158 20-208 3-163 (166)
125 cd04122 Rab14 Rab14 subfamily. 99.5 3.7E-13 8.1E-18 106.7 14.6 154 20-207 3-162 (166)
126 cd04127 Rab27A Rab27a subfamil 99.5 7.6E-13 1.6E-17 106.4 16.6 160 20-208 5-176 (180)
127 cd04175 Rap1 Rap1 subgroup. T 99.5 3.4E-13 7.4E-18 106.7 14.3 157 20-208 2-162 (164)
128 cd00880 Era_like Era (E. coli 99.5 6.7E-13 1.5E-17 104.4 15.9 162 24-207 1-162 (163)
129 cd04101 RabL4 RabL4 (Rab-like4 99.5 8E-13 1.7E-17 104.6 16.3 156 20-207 1-162 (164)
130 cd00879 Sar1 Sar1 subfamily. 99.5 3.5E-13 7.5E-18 109.4 14.6 167 17-207 17-189 (190)
131 cd04114 Rab30 Rab30 subfamily. 99.5 7.4E-13 1.6E-17 105.4 16.2 154 20-207 8-167 (169)
132 PRK15467 ethanolamine utilizat 99.5 4.3E-14 9.3E-19 110.6 8.6 145 21-209 3-147 (158)
133 cd04161 Arl2l1_Arl13_like Arl2 99.5 4.9E-13 1.1E-17 106.0 14.8 114 21-152 1-115 (167)
134 cd01862 Rab7 Rab7 subfamily. 99.5 1.4E-12 3.1E-17 104.0 17.5 162 20-209 1-167 (172)
135 cd04107 Rab32_Rab38 Rab38/Rab3 99.5 8.2E-13 1.8E-17 108.1 16.4 160 20-208 1-167 (201)
136 cd01890 LepA LepA subfamily. 99.5 2.5E-13 5.4E-18 109.2 13.1 158 20-207 1-175 (179)
137 cd00154 Rab Rab family. Rab G 99.5 7.3E-13 1.6E-17 104.1 15.5 154 20-205 1-158 (159)
138 cd01863 Rab18 Rab18 subfamily. 99.5 5.1E-13 1.1E-17 105.4 14.6 157 20-206 1-159 (161)
139 cd04110 Rab35 Rab35 subfamily. 99.5 9.2E-13 2E-17 107.5 16.5 158 19-209 6-167 (199)
140 cd00877 Ran Ran (Ras-related n 99.5 1E-12 2.2E-17 104.0 15.9 154 21-209 2-159 (166)
141 PRK12317 elongation factor 1-a 99.5 2.8E-13 6.1E-18 123.3 14.4 162 17-200 4-196 (425)
142 cd04165 GTPBP1_like GTPBP1-lik 99.5 6.4E-13 1.4E-17 109.6 14.9 119 67-206 82-220 (224)
143 cd04125 RabA_like RabA-like su 99.5 7.3E-13 1.6E-17 107.3 14.8 158 20-208 1-161 (188)
144 PLN03110 Rab GTPase; Provision 99.5 1.4E-12 3E-17 107.7 16.6 157 20-208 13-173 (216)
145 cd04126 Rab20 Rab20 subfamily. 99.5 7.9E-13 1.7E-17 108.6 15.0 113 20-151 1-114 (220)
146 cd04115 Rab33B_Rab33A Rab33B/R 99.5 1.7E-12 3.6E-17 103.4 16.3 119 20-152 3-124 (170)
147 cd04147 Ras_dva Ras-dva subfam 99.5 1E-12 2.2E-17 107.3 15.2 158 21-209 1-163 (198)
148 PTZ00369 Ras-like protein; Pro 99.5 1.2E-12 2.7E-17 105.9 15.6 158 19-208 5-166 (189)
149 cd04111 Rab39 Rab39 subfamily. 99.5 1.9E-12 4E-17 106.5 16.7 161 20-209 3-166 (211)
150 cd00157 Rho Rho (Ras homology) 99.5 1.5E-12 3.3E-17 103.7 15.8 161 20-205 1-169 (171)
151 cd01886 EF-G Elongation factor 99.5 3.8E-13 8.2E-18 114.0 12.8 115 21-152 1-131 (270)
152 cd04116 Rab9 Rab9 subfamily. 99.5 1.7E-12 3.6E-17 103.4 15.8 159 18-205 4-167 (170)
153 smart00174 RHO Rho (Ras homolo 99.5 1.4E-12 2.9E-17 104.4 15.2 160 22-207 1-170 (174)
154 cd01891 TypA_BipA TypA (tyrosi 99.5 1.7E-12 3.7E-17 105.5 16.0 116 20-152 3-132 (194)
155 CHL00189 infB translation init 99.5 8.1E-13 1.8E-17 124.9 15.9 164 18-208 243-409 (742)
156 cd04117 Rab15 Rab15 subfamily. 99.5 1.9E-12 4.1E-17 102.0 15.6 152 21-206 2-159 (161)
157 cd04123 Rab21 Rab21 subfamily. 99.5 1.5E-12 3.2E-17 102.8 15.0 158 20-207 1-160 (162)
158 PLN03118 Rab family protein; P 99.5 1.8E-12 3.9E-17 106.9 16.0 160 20-209 15-177 (211)
159 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 3.3E-12 7.1E-17 102.3 17.0 163 18-206 4-177 (182)
160 cd04168 TetM_like Tet(M)-like 99.5 7.9E-13 1.7E-17 110.1 13.8 115 21-152 1-131 (237)
161 cd01892 Miro2 Miro2 subfamily. 99.5 1.7E-12 3.6E-17 103.1 15.1 161 18-208 3-165 (169)
162 CHL00071 tufA elongation facto 99.5 1.8E-12 3.8E-17 117.1 17.0 121 16-152 9-143 (409)
163 cd01896 DRG The developmentall 99.5 4.7E-12 1E-16 105.4 18.2 87 21-114 2-88 (233)
164 cd04128 Spg1 Spg1p. Spg1p (se 99.5 4.4E-12 9.6E-17 101.8 17.4 159 20-208 1-165 (182)
165 PRK12735 elongation factor Tu; 99.5 2.1E-12 4.6E-17 116.1 17.2 119 17-152 10-143 (396)
166 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 4E-12 8.8E-17 105.0 17.3 166 18-208 12-187 (232)
167 cd00876 Ras Ras family. The R 99.5 1.7E-12 3.7E-17 102.2 14.6 154 21-206 1-158 (160)
168 cd04133 Rop_like Rop subfamily 99.5 2.3E-12 5E-17 102.5 15.3 164 20-208 2-172 (176)
169 cd01871 Rac1_like Rac1-like su 99.5 3.9E-12 8.4E-17 101.4 16.6 162 20-206 2-172 (174)
170 KOG1489 Predicted GTP-binding 99.5 1.2E-12 2.7E-17 108.0 13.8 163 20-206 197-364 (366)
171 PLN03127 Elongation factor Tu; 99.5 1.5E-12 3.2E-17 118.0 15.7 121 15-152 57-192 (447)
172 cd04139 RalA_RalB RalA/RalB su 99.5 3.5E-12 7.6E-17 100.9 16.1 157 20-208 1-161 (164)
173 cd04131 Rnd Rnd subfamily. Th 99.5 5.3E-12 1.1E-16 100.9 17.1 162 20-206 2-173 (178)
174 cd01875 RhoG RhoG subfamily. 99.5 6.2E-12 1.3E-16 101.9 17.8 164 20-208 4-176 (191)
175 cd01870 RhoA_like RhoA-like su 99.5 3.8E-12 8.3E-17 101.9 16.4 162 20-207 2-173 (175)
176 PLN03108 Rab family protein; P 99.5 2.1E-12 4.7E-17 106.1 15.2 157 20-207 7-166 (210)
177 cd04148 RGK RGK subfamily. Th 99.5 2.5E-12 5.5E-17 106.4 15.6 161 20-210 1-164 (221)
178 TIGR00231 small_GTP small GTP- 99.5 3.5E-12 7.6E-17 100.2 15.7 154 20-205 2-160 (161)
179 cd04135 Tc10 TC10 subfamily. 99.5 7.2E-12 1.6E-16 100.1 17.6 163 20-207 1-172 (174)
180 PRK12736 elongation factor Tu; 99.5 2.9E-12 6.4E-17 115.1 16.9 121 16-152 9-143 (394)
181 cd04176 Rap2 Rap2 subgroup. T 99.5 1.4E-12 3E-17 103.1 13.2 155 20-206 2-160 (163)
182 cd04137 RheB Rheb (Ras Homolog 99.5 3.3E-12 7.2E-17 102.7 15.5 160 20-210 2-164 (180)
183 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 7.9E-12 1.7E-16 102.8 17.8 163 20-207 2-174 (222)
184 KOG0073 GTP-binding ADP-ribosy 99.5 5.3E-12 1.2E-16 93.8 14.8 159 17-205 14-174 (185)
185 PRK05124 cysN sulfate adenylyl 99.4 1.3E-12 2.8E-17 119.5 13.6 168 10-200 18-216 (474)
186 cd04143 Rhes_like Rhes_like su 99.4 3.4E-12 7.5E-17 107.0 15.1 159 20-208 1-170 (247)
187 cd04177 RSR1 RSR1 subgroup. R 99.4 3.8E-12 8.2E-17 101.1 14.7 156 20-206 2-161 (168)
188 cd04129 Rho2 Rho2 subfamily. 99.4 3.7E-12 8.1E-17 102.9 14.6 164 20-208 2-172 (187)
189 PRK04000 translation initiatio 99.4 3.1E-12 6.7E-17 115.3 15.4 168 17-209 7-201 (411)
190 KOG1191 Mitochondrial GTPase [ 99.4 1.1E-12 2.4E-17 114.5 12.0 133 16-152 265-404 (531)
191 TIGR03680 eif2g_arch translati 99.4 2.3E-12 5E-17 116.2 14.3 166 18-209 3-196 (406)
192 cd04146 RERG_RasL11_like RERG/ 99.4 2.2E-12 4.9E-17 102.1 12.6 157 21-207 1-162 (165)
193 cd04102 RabL3 RabL3 (Rab-like3 99.4 1.8E-11 3.9E-16 99.2 17.9 170 20-209 1-197 (202)
194 KOG0095 GTPase Rab30, small G 99.4 5.5E-12 1.2E-16 91.9 13.2 155 20-205 8-165 (213)
195 cd04130 Wrch_1 Wrch-1 subfamil 99.4 3.8E-12 8.3E-17 101.6 13.8 161 20-205 1-170 (173)
196 cd04169 RF3 RF3 subfamily. Pe 99.4 2.7E-12 5.9E-17 108.7 13.6 116 20-152 3-138 (267)
197 PRK00049 elongation factor Tu; 99.4 5.5E-12 1.2E-16 113.3 16.2 119 17-152 10-143 (396)
198 COG0536 Obg Predicted GTPase [ 99.4 6.5E-12 1.4E-16 105.2 14.9 168 21-210 161-334 (369)
199 TIGR02034 CysN sulfate adenyly 99.4 2.3E-12 5.1E-17 116.1 13.4 156 20-199 1-187 (406)
200 KOG0078 GTP-binding protein SE 99.4 9.6E-12 2.1E-16 97.2 14.8 159 20-209 13-174 (207)
201 PF00025 Arf: ADP-ribosylation 99.4 1.6E-12 3.4E-17 103.6 10.5 160 17-207 12-174 (175)
202 cd01883 EF1_alpha Eukaryotic e 99.4 3.7E-12 8E-17 105.4 13.0 135 21-176 1-173 (219)
203 COG0488 Uup ATPase components 99.4 5.1E-12 1.1E-16 115.8 14.9 44 115-163 152-198 (530)
204 cd04103 Centaurin_gamma Centau 99.4 8E-12 1.7E-16 97.9 13.6 152 20-205 1-155 (158)
205 PRK05506 bifunctional sulfate 99.4 3.7E-12 8.1E-17 121.4 14.1 160 15-198 20-210 (632)
206 TIGR00483 EF-1_alpha translati 99.4 6.4E-12 1.4E-16 114.5 15.1 161 17-199 5-197 (426)
207 TIGR00485 EF-Tu translation el 99.4 1.3E-11 2.7E-16 111.2 16.5 121 16-152 9-143 (394)
208 KOG0092 GTPase Rab5/YPT51 and 99.4 4.6E-12 1E-16 97.0 11.0 159 19-210 5-168 (200)
209 TIGR00437 feoB ferrous iron tr 99.4 6.1E-11 1.3E-15 111.4 20.9 154 26-208 1-154 (591)
210 KOG0080 GTPase Rab18, small G 99.4 1.2E-11 2.7E-16 91.3 12.8 161 20-209 12-174 (209)
211 cd01885 EF2 EF2 (for archaea a 99.4 5.1E-12 1.1E-16 103.7 11.5 115 20-150 1-138 (222)
212 TIGR00491 aIF-2 translation in 99.4 8E-12 1.7E-16 116.3 14.2 114 20-151 5-135 (590)
213 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.4 4.1E-11 8.9E-16 91.9 15.5 161 19-209 22-185 (221)
214 TIGR01394 TypA_BipA GTP-bindin 99.4 2E-11 4.2E-16 114.3 16.3 115 20-151 2-130 (594)
215 smart00176 RAN Ran (Ras-relate 99.4 3.3E-11 7.1E-16 97.8 15.4 150 25-209 1-154 (200)
216 cd04170 EF-G_bact Elongation f 99.4 1.9E-11 4.1E-16 104.5 14.3 115 21-152 1-131 (268)
217 KOG0394 Ras-related GTPase [Ge 99.4 2.8E-11 6E-16 91.9 13.2 163 20-208 10-177 (210)
218 PTZ00327 eukaryotic translatio 99.4 1.2E-11 2.6E-16 111.9 13.5 170 15-209 30-233 (460)
219 PTZ00141 elongation factor 1- 99.4 1.8E-11 3.8E-16 111.3 14.4 140 17-177 5-182 (446)
220 cd04167 Snu114p Snu114p subfam 99.4 1.5E-11 3.3E-16 101.4 12.8 115 20-150 1-136 (213)
221 TIGR01393 lepA GTP-binding pro 99.4 2.3E-11 4.9E-16 114.2 15.4 160 20-209 4-180 (595)
222 KOG1145 Mitochondrial translat 99.3 5.4E-11 1.2E-15 105.2 16.2 160 20-206 154-313 (683)
223 COG0532 InfB Translation initi 99.3 4.6E-11 1E-15 106.3 15.9 163 20-209 6-170 (509)
224 KOG0098 GTPase Rab2, small G p 99.3 8.6E-11 1.9E-15 89.4 15.0 158 20-208 7-167 (216)
225 KOG0087 GTPase Rab11/YPT3, sma 99.3 4.6E-11 1E-15 93.0 13.7 116 20-151 15-133 (222)
226 PRK10218 GTP-binding protein; 99.3 3.6E-11 7.8E-16 112.4 15.5 116 20-152 6-135 (607)
227 PF00350 Dynamin_N: Dynamin fa 99.3 5.9E-12 1.3E-16 100.0 8.9 115 22-147 1-168 (168)
228 PTZ00132 GTP-binding nuclear p 99.3 7E-11 1.5E-15 97.8 15.2 157 18-210 8-169 (215)
229 PLN03126 Elongation factor Tu; 99.3 4.5E-11 9.7E-16 109.0 15.1 138 16-176 78-230 (478)
230 PRK04004 translation initiatio 99.3 6.5E-11 1.4E-15 110.8 16.5 113 20-150 7-136 (586)
231 cd00882 Ras_like_GTPase Ras-li 99.3 5.1E-11 1.1E-15 92.7 13.4 112 24-152 1-117 (157)
232 PF08477 Miro: Miro-like prote 99.3 2.4E-12 5.1E-17 96.0 5.5 115 21-148 1-119 (119)
233 cd04105 SR_beta Signal recogni 99.3 4.9E-11 1.1E-15 97.3 13.6 115 21-152 2-124 (203)
234 PRK05433 GTP-binding protein L 99.3 5.2E-11 1.1E-15 111.9 14.9 161 20-210 8-185 (600)
235 smart00053 DYNc Dynamin, GTPas 99.3 1.3E-10 2.8E-15 96.0 15.1 79 69-152 125-207 (240)
236 TIGR00484 EF-G translation elo 99.3 3.5E-11 7.6E-16 115.8 13.7 117 19-152 10-142 (689)
237 PRK00007 elongation factor G; 99.3 4E-11 8.6E-16 115.3 13.7 117 19-152 10-142 (693)
238 PF00071 Ras: Ras family; Int 99.3 7.8E-11 1.7E-15 92.9 12.4 156 21-207 1-159 (162)
239 PLN00023 GTP-binding protein; 99.3 7.8E-11 1.7E-15 100.3 12.9 119 19-152 21-166 (334)
240 COG2229 Predicted GTPase [Gene 99.3 3.9E-10 8.5E-15 86.2 15.2 119 19-152 10-136 (187)
241 PF05049 IIGP: Interferon-indu 99.3 1.6E-10 3.5E-15 100.4 14.9 119 18-149 34-153 (376)
242 cd01873 RhoBTB RhoBTB subfamil 99.3 2.6E-10 5.5E-15 92.4 15.2 165 19-206 2-193 (195)
243 TIGR00503 prfC peptide chain r 99.3 6.7E-11 1.5E-15 109.3 13.3 118 18-152 10-147 (527)
244 PRK12739 elongation factor G; 99.3 7.2E-11 1.6E-15 113.6 14.0 117 19-152 8-140 (691)
245 PRK00741 prfC peptide chain re 99.3 8.2E-11 1.8E-15 108.7 13.7 117 19-152 10-146 (526)
246 KOG0079 GTP-binding protein H- 99.3 1.2E-10 2.7E-15 84.8 11.3 157 20-208 9-168 (198)
247 KOG0074 GTP-binding ADP-ribosy 99.2 2.3E-11 5.1E-16 87.9 7.2 127 13-159 11-139 (185)
248 COG4917 EutP Ethanolamine util 99.2 2.4E-11 5.2E-16 86.1 7.0 140 20-207 2-144 (148)
249 PLN00043 elongation factor 1-a 99.2 2.1E-10 4.6E-15 104.2 15.1 140 17-177 5-182 (447)
250 cd01882 BMS1 Bms1. Bms1 is an 99.2 8.3E-10 1.8E-14 91.5 16.6 111 16-152 36-148 (225)
251 COG1100 GTPase SAR1 and relate 99.2 6.3E-10 1.4E-14 92.4 15.8 116 20-152 6-126 (219)
252 TIGR02836 spore_IV_A stage IV 99.2 5.1E-10 1.1E-14 97.0 15.3 129 16-152 14-195 (492)
253 COG1163 DRG Predicted GTPase [ 99.2 2.1E-10 4.5E-15 95.5 12.1 93 15-114 59-151 (365)
254 KOG1924 RhoA GTPase effector D 99.2 9.5E-10 2.1E-14 100.5 16.9 29 272-300 473-501 (1102)
255 PRK09435 membrane ATPase/prote 99.2 2.5E-09 5.5E-14 92.5 18.9 111 68-209 148-260 (332)
256 KOG0448 Mitofusin 1 GTPase, in 99.2 1.2E-08 2.7E-13 92.9 23.4 128 20-163 110-287 (749)
257 KOG0088 GTPase Rab21, small G 99.2 1.8E-10 3.8E-15 85.0 9.3 157 20-208 14-174 (218)
258 PRK13351 elongation factor G; 99.2 3.3E-10 7.2E-15 109.4 13.9 118 18-152 7-140 (687)
259 KOG0093 GTPase Rab3, small G p 99.1 8.5E-10 1.8E-14 80.5 11.0 158 21-208 23-182 (193)
260 COG5256 TEF1 Translation elong 99.1 1.6E-09 3.4E-14 93.5 14.4 142 17-179 5-182 (428)
261 KOG0070 GTP-binding ADP-ribosy 99.1 3.1E-10 6.8E-15 86.8 8.6 163 17-209 15-178 (181)
262 PTZ00416 elongation factor 2; 99.1 2.6E-10 5.6E-15 111.5 10.0 118 17-150 17-157 (836)
263 KOG1490 GTP-binding protein CR 99.1 5E-10 1.1E-14 98.2 10.5 131 18-158 167-300 (620)
264 COG0488 Uup ATPase components 99.1 1.6E-11 3.5E-16 112.6 1.4 128 18-163 347-484 (530)
265 PLN00116 translation elongatio 99.1 7.8E-10 1.7E-14 108.5 12.1 117 18-150 18-163 (843)
266 KOG0086 GTPase Rab4, small G p 99.1 6.9E-09 1.5E-13 76.2 13.9 158 20-207 10-169 (214)
267 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 1.5E-09 3.3E-14 89.1 11.3 123 21-152 1-126 (232)
268 KOG0462 Elongation factor-type 99.1 2E-09 4.3E-14 95.6 12.3 163 17-209 58-235 (650)
269 KOG0091 GTPase Rab39, small G 99.1 3.2E-09 6.9E-14 79.0 11.4 161 20-208 9-172 (213)
270 TIGR00490 aEF-2 translation el 99.1 4.6E-10 1E-14 108.4 8.5 117 19-152 19-153 (720)
271 KOG0076 GTP-binding ADP-ribosy 99.1 1.1E-09 2.4E-14 82.5 8.5 166 18-211 16-189 (197)
272 COG3276 SelB Selenocysteine-sp 99.0 5E-09 1.1E-13 91.1 13.7 159 21-208 2-161 (447)
273 KOG1532 GTPase XAB1, interacts 99.0 2.7E-09 5.9E-14 86.6 11.1 131 70-210 117-265 (366)
274 PF09439 SRPRB: Signal recogni 99.0 3.6E-10 7.9E-15 88.5 5.8 120 19-152 3-127 (181)
275 cd01900 YchF YchF subfamily. 99.0 2.1E-09 4.4E-14 90.7 9.8 87 22-114 1-103 (274)
276 PTZ00258 GTP-binding protein; 99.0 3.4E-09 7.3E-14 93.5 11.0 91 17-114 19-126 (390)
277 PRK09601 GTP-binding protein Y 99.0 3.9E-09 8.4E-14 92.0 11.0 88 20-114 3-107 (364)
278 KOG0410 Predicted GTP binding 99.0 3.7E-09 7.9E-14 88.0 10.1 161 19-209 178-341 (410)
279 KOG0395 Ras-related GTPase [Ge 99.0 1.3E-08 2.9E-13 81.9 12.7 160 19-210 3-166 (196)
280 KOG0075 GTP-binding ADP-ribosy 99.0 2.4E-09 5.3E-14 78.1 7.5 156 19-206 20-179 (186)
281 COG0480 FusA Translation elong 99.0 4.9E-09 1.1E-13 99.0 11.7 118 18-152 9-143 (697)
282 COG5257 GCD11 Translation init 99.0 5.2E-09 1.1E-13 87.0 9.9 167 17-211 8-204 (415)
283 cd01858 NGP_1 NGP-1. Autoanti 99.0 1.8E-09 3.9E-14 84.5 7.0 57 18-79 101-157 (157)
284 cd01851 GBP Guanylate-binding 98.9 1.8E-08 3.9E-13 83.3 12.7 108 18-130 6-116 (224)
285 PRK07560 elongation factor EF- 98.9 2.6E-09 5.7E-14 103.5 8.7 117 19-151 20-153 (731)
286 KOG0071 GTP-binding ADP-ribosy 98.9 7.8E-08 1.7E-12 69.8 13.9 115 18-152 16-133 (180)
287 COG2895 CysN GTPases - Sulfate 98.9 2.8E-08 6.1E-13 83.8 13.0 156 18-197 5-191 (431)
288 KOG4252 GTP-binding protein [S 98.9 2.1E-09 4.5E-14 81.2 5.3 117 20-152 21-139 (246)
289 PF03193 DUF258: Protein of un 98.9 1.1E-09 2.4E-14 84.0 3.8 63 19-85 35-103 (161)
290 KOG0458 Elongation factor 1 al 98.9 2E-08 4.4E-13 90.0 12.1 140 18-177 176-351 (603)
291 PRK13768 GTPase; Provisional 98.9 8.8E-09 1.9E-13 86.8 9.1 130 70-208 98-246 (253)
292 COG1120 FepC ABC-type cobalami 98.9 9.5E-09 2.1E-13 84.9 8.9 122 19-152 28-174 (258)
293 PRK10636 putative ABC transpor 98.9 2.2E-07 4.8E-12 89.1 19.6 132 18-163 337-475 (638)
294 KOG1924 RhoA GTPase effector D 98.9 2.2E-08 4.9E-13 91.8 11.4 12 199-210 386-397 (1102)
295 COG1116 TauB ABC-type nitrate/ 98.9 2.7E-08 5.8E-13 80.8 10.7 147 18-185 28-189 (248)
296 KOG0927 Predicted transporter 98.9 2E-09 4.4E-14 95.7 4.1 127 19-163 416-554 (614)
297 cd04178 Nucleostemin_like Nucl 98.9 6.8E-09 1.5E-13 81.9 6.7 57 18-79 116-172 (172)
298 PRK12740 elongation factor G; 98.8 2.4E-08 5.2E-13 96.5 11.8 111 25-152 1-127 (668)
299 PRK11147 ABC transporter ATPas 98.8 8.8E-08 1.9E-12 91.9 14.7 134 17-163 343-485 (635)
300 TIGR00750 lao LAO/AO transport 98.8 4E-07 8.7E-12 79.0 17.3 24 18-41 33-56 (300)
301 cd01849 YlqF_related_GTPase Yl 98.8 9.7E-09 2.1E-13 80.1 6.6 57 18-79 99-155 (155)
302 KOG1954 Endocytosis/signaling 98.8 3.9E-08 8.5E-13 83.3 9.6 126 19-152 58-226 (532)
303 KOG1707 Predicted Ras related/ 98.8 5.1E-08 1.1E-12 87.5 10.9 170 17-218 7-184 (625)
304 COG5192 BMS1 GTP-binding prote 98.8 2.6E-07 5.5E-12 82.7 14.7 119 19-163 69-188 (1077)
305 PRK09602 translation-associate 98.8 6E-08 1.3E-12 86.7 11.0 89 20-114 2-113 (396)
306 cd01855 YqeH YqeH. YqeH is an 98.8 1.2E-08 2.6E-13 82.6 6.0 58 19-79 127-190 (190)
307 PRK12288 GTPase RsgA; Reviewed 98.8 2.1E-08 4.5E-13 88.0 7.9 62 20-85 206-273 (347)
308 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 2.8E-08 6.1E-13 76.2 6.9 65 12-81 76-140 (141)
309 PRK10636 putative ABC transpor 98.7 9.5E-08 2.1E-12 91.5 11.6 44 115-163 148-194 (638)
310 KOG0097 GTPase Rab14, small G 98.7 5.9E-07 1.3E-11 65.2 12.8 117 20-151 12-130 (215)
311 PRK09563 rbgA GTPase YlqF; Rev 98.7 6.3E-08 1.4E-12 83.4 9.4 66 18-88 120-185 (287)
312 KOG0393 Ras-related small GTPa 98.7 8.1E-08 1.7E-12 75.7 9.1 116 19-152 4-124 (198)
313 KOG3883 Ras family small GTPas 98.7 1.2E-06 2.7E-11 64.7 14.5 119 18-152 8-133 (198)
314 COG1121 ZnuC ABC-type Mn/Zn tr 98.7 5.3E-08 1.1E-12 80.2 8.3 35 18-56 29-63 (254)
315 cd01899 Ygr210 Ygr210 subfamil 98.7 1E-07 2.2E-12 82.6 10.5 87 22-114 1-110 (318)
316 COG1217 TypA Predicted membran 98.7 1.4E-07 3E-12 82.5 11.1 116 20-152 6-135 (603)
317 COG1162 Predicted GTPases [Gen 98.7 6.4E-08 1.4E-12 81.2 8.3 64 18-84 163-231 (301)
318 cd03222 ABC_RNaseL_inhibitor T 98.7 2.4E-07 5.2E-12 73.3 11.0 36 17-56 23-58 (177)
319 TIGR01069 mutS2 MutS2 family p 98.7 2.8E-06 6E-11 82.5 20.4 23 20-42 323-345 (771)
320 PRK12289 GTPase RsgA; Reviewed 98.7 4.5E-08 9.8E-13 85.9 7.4 60 20-83 173-238 (352)
321 cd03293 ABC_NrtD_SsuB_transpor 98.7 1.4E-07 3E-12 78.3 10.0 27 18-44 29-55 (220)
322 COG0012 Predicted GTPase, prob 98.7 9.1E-07 2E-11 76.2 14.6 89 19-114 2-108 (372)
323 KOG0077 Vesicle coat complex C 98.7 2.6E-07 5.6E-12 69.3 9.8 114 20-152 21-136 (193)
324 KOG0081 GTPase Rab27, small G 98.7 8.5E-08 1.9E-12 71.1 6.7 157 21-207 11-179 (219)
325 KOG0072 GTP-binding ADP-ribosy 98.7 1.1E-07 2.4E-12 69.4 7.1 163 16-210 15-180 (182)
326 PRK14845 translation initiatio 98.7 3.7E-07 8.1E-12 90.0 13.2 103 31-151 473-592 (1049)
327 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.7 4.8E-07 1E-11 69.5 11.2 35 18-56 25-59 (144)
328 KOG0083 GTPase Rab26/Rab37, sm 98.7 8.3E-08 1.8E-12 68.9 6.3 157 23-209 1-160 (192)
329 cd03230 ABC_DR_subfamily_A Thi 98.6 4.2E-07 9.2E-12 72.3 11.2 27 18-44 25-51 (173)
330 TIGR01425 SRP54_euk signal rec 98.6 9.4E-07 2E-11 79.0 14.3 122 19-152 100-254 (429)
331 COG4988 CydD ABC-type transpor 98.6 1.3E-07 2.8E-12 85.7 9.0 128 18-152 346-492 (559)
332 TIGR03596 GTPase_YlqF ribosome 98.6 1.5E-07 3.2E-12 80.7 9.0 64 18-86 117-180 (276)
333 COG1131 CcmA ABC-type multidru 98.6 4.6E-08 9.9E-13 84.3 5.9 125 18-151 30-171 (293)
334 KOG0461 Selenocysteine-specifi 98.6 9.3E-07 2E-11 74.5 13.2 168 19-209 7-193 (522)
335 TIGR00157 ribosome small subun 98.6 6.6E-08 1.4E-12 81.1 6.4 60 20-84 121-186 (245)
336 PRK11247 ssuB aliphatic sulfon 98.6 1.8E-07 3.8E-12 79.3 8.9 27 18-44 37-63 (257)
337 PRK00098 GTPase RsgA; Reviewed 98.6 1.4E-07 3E-12 81.7 8.3 61 19-82 164-229 (298)
338 KOG0066 eIF2-interacting prote 98.6 9.1E-08 2E-12 83.3 6.8 124 20-161 614-747 (807)
339 cd03229 ABC_Class3 This class 98.6 3.7E-07 7.9E-12 73.0 10.0 27 18-44 25-51 (178)
340 cd01854 YjeQ_engC YjeQ/EngC. 98.6 1.6E-07 3.4E-12 80.8 8.3 60 20-82 162-226 (287)
341 cd03259 ABC_Carb_Solutes_like 98.6 2.3E-07 5.1E-12 76.6 9.0 27 18-44 25-51 (213)
342 cd03261 ABC_Org_Solvent_Resist 98.6 3.3E-07 7.1E-12 76.9 9.9 27 18-44 25-51 (235)
343 PRK10584 putative ABC transpor 98.6 2.6E-07 5.7E-12 77.1 9.2 27 18-44 35-61 (228)
344 COG1124 DppF ABC-type dipeptid 98.6 2.2E-07 4.9E-12 74.9 8.1 149 18-186 32-201 (252)
345 TIGR02868 CydC thiol reductant 98.6 1.5E-07 3.3E-12 88.8 8.5 121 18-150 360-504 (529)
346 PF03308 ArgK: ArgK protein; 98.6 4.5E-07 9.7E-12 74.4 9.9 107 69-209 122-230 (266)
347 PRK13543 cytochrome c biogenes 98.6 1.4E-07 2.9E-12 77.9 7.1 35 18-56 36-70 (214)
348 COG3840 ThiQ ABC-type thiamine 98.6 3.1E-07 6.7E-12 70.6 8.3 36 17-56 23-58 (231)
349 PRK11147 ABC transporter ATPas 98.6 3.5E-06 7.6E-11 81.1 17.6 44 115-163 155-201 (635)
350 PRK10416 signal recognition pa 98.6 5.8E-06 1.3E-10 71.9 17.1 126 17-152 112-274 (318)
351 PRK14721 flhF flagellar biosyn 98.6 2.5E-07 5.4E-12 82.7 8.8 26 17-42 189-214 (420)
352 KOG1144 Translation initiation 98.6 5.5E-07 1.2E-11 83.0 11.0 166 20-208 476-686 (1064)
353 cd03237 ABC_RNaseL_inhibitor_d 98.6 3.8E-07 8.3E-12 76.7 9.5 35 18-56 24-58 (246)
354 TIGR00960 3a0501s02 Type II (G 98.6 1.5E-07 3.3E-12 77.8 6.9 27 18-44 28-54 (216)
355 COG0050 TufB GTPases - transla 98.6 7.9E-07 1.7E-11 73.3 10.7 141 15-177 8-162 (394)
356 PRK11248 tauB taurine transpor 98.6 4.5E-07 9.7E-12 76.9 9.7 27 18-44 26-52 (255)
357 cd01856 YlqF YlqF. Proteins o 98.6 1.7E-07 3.8E-12 74.3 6.8 58 18-80 114-171 (171)
358 COG4108 PrfC Peptide chain rel 98.6 2.9E-07 6.2E-12 80.1 8.4 117 19-152 12-148 (528)
359 KOG0090 Signal recognition par 98.6 1E-06 2.3E-11 69.2 10.7 116 20-152 39-160 (238)
360 cd03216 ABC_Carb_Monos_I This 98.6 6.7E-07 1.5E-11 70.3 9.9 27 18-44 25-51 (163)
361 TIGR02211 LolD_lipo_ex lipopro 98.6 6.5E-07 1.4E-11 74.4 10.4 27 18-44 30-56 (221)
362 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.6 4.4E-07 9.5E-12 75.2 9.3 27 18-44 29-55 (218)
363 KOG2486 Predicted GTPase [Gene 98.5 7.8E-07 1.7E-11 72.9 10.1 128 16-152 133-263 (320)
364 cd03213 ABCG_EPDR ABCG transpo 98.5 4.7E-07 1E-11 73.4 9.0 26 18-43 34-59 (194)
365 cd03265 ABC_DrrA DrrA is the A 98.5 3.6E-07 7.7E-12 75.9 8.4 27 18-44 25-51 (220)
366 cd03223 ABCD_peroxisomal_ALDP 98.5 7.4E-07 1.6E-11 70.3 9.7 34 18-55 26-59 (166)
367 cd03256 ABC_PhnC_transporter A 98.5 3.4E-07 7.4E-12 77.2 8.3 28 17-44 25-52 (241)
368 cd03226 ABC_cobalt_CbiO_domain 98.5 2.1E-07 4.5E-12 76.3 6.7 27 18-44 25-51 (205)
369 cd03298 ABC_ThiQ_thiamine_tran 98.5 5.1E-07 1.1E-11 74.4 9.0 27 18-44 23-49 (211)
370 cd03269 ABC_putative_ATPase Th 98.5 1.6E-07 3.5E-12 77.3 5.9 28 17-44 24-51 (210)
371 COG0481 LepA Membrane GTPase L 98.5 5.2E-07 1.1E-11 79.3 9.2 163 20-212 10-189 (603)
372 COG3839 MalK ABC-type sugar tr 98.5 4.7E-07 1E-11 78.1 8.8 109 18-134 28-151 (338)
373 cd03258 ABC_MetN_methionine_tr 98.5 7E-07 1.5E-11 74.8 9.8 36 17-56 29-64 (233)
374 COG1161 Predicted GTPases [Gen 98.5 2.8E-07 6.1E-12 80.3 7.6 61 19-84 132-192 (322)
375 COG1136 SalX ABC-type antimicr 98.5 1E-06 2.2E-11 71.5 10.1 36 17-56 29-64 (226)
376 TIGR02315 ABC_phnC phosphonate 98.5 4.7E-07 1E-11 76.4 8.7 27 18-44 27-53 (243)
377 TIGR01184 ntrCD nitrate transp 98.5 7.2E-07 1.6E-11 74.5 9.6 27 18-44 10-36 (230)
378 TIGR02673 FtsE cell division A 98.5 3.4E-07 7.3E-12 75.7 7.5 27 18-44 27-53 (214)
379 cd03301 ABC_MalK_N The N-termi 98.5 5.7E-07 1.2E-11 74.3 8.8 27 18-44 25-51 (213)
380 cd03294 ABC_Pro_Gly_Bertaine T 98.5 8.5E-07 1.8E-11 75.9 10.1 27 18-44 49-75 (269)
381 COG2274 SunT ABC-type bacterio 98.5 2.3E-07 4.9E-12 88.6 7.1 121 18-152 498-645 (709)
382 COG1703 ArgK Putative periplas 98.5 7.2E-06 1.6E-10 68.4 14.8 24 17-40 49-72 (323)
383 PRK11000 maltose/maltodextrin 98.5 6.3E-07 1.4E-11 80.0 9.4 27 18-44 28-54 (369)
384 cd03262 ABC_HisP_GlnQ_permease 98.5 2.9E-07 6.4E-12 76.0 6.6 27 18-44 25-51 (213)
385 KOG0062 ATPase component of AB 98.5 5.7E-08 1.2E-12 86.1 2.4 43 115-163 197-243 (582)
386 KOG3886 GTP-binding protein [S 98.5 9.5E-07 2.1E-11 70.3 8.9 124 18-152 3-131 (295)
387 PRK11432 fbpC ferric transport 98.5 7.3E-07 1.6E-11 78.8 9.4 35 18-56 31-65 (351)
388 TIGR01186 proV glycine betaine 98.5 8.5E-07 1.8E-11 78.5 9.8 123 18-151 18-164 (363)
389 PRK11629 lolD lipoprotein tran 98.5 1.1E-06 2.4E-11 73.5 10.1 27 18-44 34-60 (233)
390 cd03266 ABC_NatA_sodium_export 98.5 3.3E-07 7.1E-12 76.0 6.7 35 18-56 30-64 (218)
391 cd03225 ABC_cobalt_CbiO_domain 98.5 5.9E-07 1.3E-11 74.0 8.2 35 18-56 26-60 (211)
392 cd03296 ABC_CysA_sulfate_impor 98.5 8.6E-07 1.9E-11 74.6 9.3 27 18-44 27-53 (239)
393 cd03292 ABC_FtsE_transporter F 98.5 4E-07 8.7E-12 75.2 7.1 27 18-44 26-52 (214)
394 TIGR01277 thiQ thiamine ABC tr 98.5 1.2E-06 2.5E-11 72.4 9.8 27 18-44 23-49 (213)
395 TIGR01188 drrA daunorubicin re 98.5 5.2E-07 1.1E-11 78.5 7.9 35 18-56 18-52 (302)
396 TIGR01288 nodI ATP-binding ABC 98.5 5.5E-07 1.2E-11 78.4 8.0 27 18-44 29-55 (303)
397 PRK11144 modC molybdate transp 98.5 9.9E-07 2.1E-11 78.3 9.7 27 18-44 23-49 (352)
398 cd03264 ABC_drug_resistance_li 98.5 2.4E-07 5.2E-12 76.3 5.4 24 21-44 27-50 (211)
399 PRK11124 artP arginine transpo 98.5 7.5E-07 1.6E-11 75.1 8.4 35 18-56 27-61 (242)
400 cd03219 ABC_Mj1267_LivG_branch 98.5 1.4E-06 3E-11 73.2 10.0 27 18-44 25-51 (236)
401 cd03231 ABC_CcmA_heme_exporter 98.5 5.1E-07 1.1E-11 73.7 7.1 27 18-44 25-51 (201)
402 cd03295 ABC_OpuCA_Osmoprotecti 98.5 9.8E-07 2.1E-11 74.4 9.1 27 18-44 26-52 (242)
403 cd01859 MJ1464 MJ1464. This f 98.5 5.9E-07 1.3E-11 70.2 7.2 57 18-79 100-156 (156)
404 TIGR02142 modC_ABC molybdenum 98.5 1.2E-06 2.5E-11 78.0 9.9 27 18-44 22-48 (354)
405 PRK13536 nodulation factor exp 98.5 5.1E-07 1.1E-11 79.5 7.6 35 18-56 66-100 (340)
406 PRK11819 putative ABC transpor 98.5 4.2E-06 9E-11 79.3 14.2 27 18-44 32-58 (556)
407 TIGR03608 L_ocin_972_ABC putat 98.5 6.4E-07 1.4E-11 73.5 7.7 27 18-44 23-49 (206)
408 PRK13537 nodulation ABC transp 98.5 5.3E-07 1.2E-11 78.5 7.6 35 18-56 32-66 (306)
409 PRK15064 ABC transporter ATP-b 98.5 2.9E-06 6.2E-11 80.1 13.1 27 18-44 26-52 (530)
410 PRK11153 metN DL-methionine tr 98.5 1.1E-06 2.3E-11 77.8 9.6 27 18-44 30-56 (343)
411 PRK11650 ugpC glycerol-3-phosp 98.5 6.2E-07 1.4E-11 79.5 8.1 35 18-56 29-63 (356)
412 COG1134 TagH ABC-type polysacc 98.5 1.8E-07 4E-12 75.6 4.3 42 17-62 51-92 (249)
413 PRK14722 flhF flagellar biosyn 98.5 3.6E-06 7.9E-11 74.1 12.7 26 18-43 136-161 (374)
414 COG4586 ABC-type uncharacteriz 98.4 7.4E-07 1.6E-11 73.0 7.6 35 19-57 50-84 (325)
415 TIGR02203 MsbA_lipidA lipid A 98.4 6.4E-07 1.4E-11 85.5 8.7 126 18-152 357-505 (571)
416 PRK13657 cyclic beta-1,2-gluca 98.4 7E-07 1.5E-11 85.4 8.9 124 18-151 360-506 (588)
417 PRK11889 flhF flagellar biosyn 98.4 6.4E-07 1.4E-11 78.3 7.7 122 19-152 241-392 (436)
418 TIGR03597 GTPase_YqeH ribosome 98.4 5.8E-07 1.3E-11 79.9 7.7 61 19-82 154-217 (360)
419 cd03232 ABC_PDR_domain2 The pl 98.4 1.2E-06 2.5E-11 71.0 8.7 26 18-43 32-57 (192)
420 KOG0468 U5 snRNP-specific prot 98.4 1.1E-06 2.5E-11 80.1 9.2 115 20-150 129-262 (971)
421 cd03218 ABC_YhbG The ABC trans 98.4 9.5E-07 2.1E-11 74.0 8.4 27 18-44 25-51 (232)
422 PRK10908 cell division protein 98.4 7.5E-07 1.6E-11 74.0 7.7 28 17-44 26-53 (222)
423 cd03215 ABC_Carb_Monos_II This 98.4 3.1E-06 6.8E-11 67.9 11.0 35 18-56 25-59 (182)
424 PRK13409 putative ATPase RIL; 98.4 4.5E-07 9.8E-12 85.7 7.1 36 17-56 363-398 (590)
425 PRK10463 hydrogenase nickel in 98.4 1.7E-07 3.6E-12 79.1 3.6 25 18-42 103-127 (290)
426 PRK15056 manganese/iron transp 98.4 7.5E-07 1.6E-11 76.4 7.7 27 18-44 32-58 (272)
427 TIGR03265 PhnT2 putative 2-ami 98.4 1.2E-06 2.6E-11 77.6 9.1 35 18-56 29-63 (353)
428 PRK10575 iron-hydroxamate tran 98.4 1.6E-06 3.5E-11 74.1 9.7 27 18-44 36-62 (265)
429 cd03297 ABC_ModC_molybdenum_tr 98.4 1.5E-06 3.1E-11 71.9 9.1 25 20-44 24-48 (214)
430 PRK14723 flhF flagellar biosyn 98.4 3.5E-06 7.7E-11 80.3 12.6 124 19-152 185-338 (767)
431 PF00448 SRP54: SRP54-type pro 98.4 2.1E-06 4.6E-11 69.2 9.7 72 69-152 84-155 (196)
432 PRK10070 glycine betaine trans 98.4 1.7E-06 3.8E-11 77.5 10.1 35 18-56 53-87 (400)
433 cd03246 ABCC_Protease_Secretio 98.4 2.5E-06 5.4E-11 67.9 10.0 27 18-44 27-53 (173)
434 PRK11264 putative amino-acid A 98.4 8.6E-07 1.9E-11 75.1 7.8 27 18-44 28-54 (250)
435 PRK09536 btuD corrinoid ABC tr 98.4 7.1E-07 1.5E-11 80.0 7.6 27 18-44 28-54 (402)
436 TIGR03005 ectoine_ehuA ectoine 98.4 1.5E-06 3.2E-11 73.8 9.2 27 18-44 25-51 (252)
437 PRK11831 putative ABC transpor 98.4 2E-06 4.4E-11 73.6 10.1 27 18-44 32-58 (269)
438 PRK13538 cytochrome c biogenes 98.4 5.4E-07 1.2E-11 73.8 6.3 35 18-56 26-60 (204)
439 TIGR01166 cbiO cobalt transpor 98.4 1.1E-06 2.4E-11 71.1 8.0 27 18-44 17-43 (190)
440 PRK13546 teichoic acids export 98.4 1.5E-06 3.2E-11 73.9 9.0 36 18-57 49-84 (264)
441 PRK10771 thiQ thiamine transpo 98.4 1.5E-06 3.3E-11 72.7 9.0 27 18-44 24-50 (232)
442 TIGR03348 VI_IcmF type VI secr 98.4 1.7E-05 3.6E-10 81.2 18.0 123 21-152 113-258 (1169)
443 cd03300 ABC_PotA_N PotA is an 98.4 2.4E-06 5.2E-11 71.5 10.0 27 18-44 25-51 (232)
444 TIGR03864 PQQ_ABC_ATP ABC tran 98.4 2.3E-06 4.9E-11 71.9 9.9 27 18-44 26-52 (236)
445 TIGR02314 ABC_MetN D-methionin 98.4 2E-06 4.2E-11 75.8 9.7 35 18-56 30-64 (343)
446 cd03263 ABC_subfamily_A The AB 98.4 6.9E-07 1.5E-11 74.2 6.6 34 18-55 27-60 (220)
447 PRK13541 cytochrome c biogenes 98.4 7.4E-07 1.6E-11 72.4 6.6 28 17-44 24-51 (195)
448 PF03029 ATP_bind_1: Conserved 98.4 1.1E-06 2.4E-11 73.1 7.7 77 70-152 92-171 (238)
449 PRK09544 znuC high-affinity zi 98.4 1.7E-06 3.7E-11 73.1 8.9 27 18-44 29-55 (251)
450 TIGR03797 NHPM_micro_ABC2 NHPM 98.4 1.1E-06 2.3E-11 85.7 8.7 123 18-152 478-624 (686)
451 PRK13539 cytochrome c biogenes 98.4 1.3E-06 2.8E-11 71.7 8.0 35 18-56 27-61 (207)
452 PRK10619 histidine/lysine/argi 98.4 1.3E-06 2.8E-11 74.3 8.2 27 18-44 30-56 (257)
453 PRK13646 cbiO cobalt transport 98.4 2.1E-06 4.5E-11 74.2 9.5 35 18-56 32-66 (286)
454 cd03224 ABC_TM1139_LivF_branch 98.4 1E-06 2.2E-11 73.3 7.3 35 18-56 25-59 (222)
455 TIGR03796 NHPM_micro_ABC1 NHPM 98.4 1.4E-06 3.1E-11 85.2 9.5 125 18-152 504-651 (710)
456 TIGR01189 ccmA heme ABC export 98.4 1.1E-06 2.5E-11 71.5 7.5 27 18-44 25-51 (198)
457 TIGR00968 3a0106s01 sulfate AB 98.4 2E-06 4.4E-11 72.2 9.1 27 18-44 25-51 (237)
458 PRK10851 sulfate/thiosulfate t 98.4 2.2E-06 4.8E-11 75.9 9.7 27 18-44 27-53 (353)
459 cd03228 ABCC_MRP_Like The MRP 98.4 2.8E-06 6E-11 67.4 9.3 27 18-44 27-53 (171)
460 cd03268 ABC_BcrA_bacitracin_re 98.4 6.7E-07 1.5E-11 73.5 6.0 27 18-44 25-51 (208)
461 COG1132 MdlB ABC-type multidru 98.4 1.6E-06 3.4E-11 82.6 9.3 134 17-161 353-508 (567)
462 TIGR02769 nickel_nikE nickel i 98.4 5E-06 1.1E-10 71.0 11.4 36 17-56 35-70 (265)
463 PRK13637 cbiO cobalt transport 98.4 2.3E-06 5.1E-11 73.8 9.5 27 18-44 32-58 (287)
464 PRK11300 livG leucine/isoleuci 98.4 1.7E-06 3.8E-11 73.5 8.6 27 18-44 30-56 (255)
465 PRK13634 cbiO cobalt transport 98.4 2.3E-06 5E-11 74.0 9.4 35 18-56 32-66 (290)
466 PRK15112 antimicrobial peptide 98.4 4.1E-06 8.9E-11 71.6 10.8 35 18-56 38-72 (267)
467 TIGR02204 MsbA_rel ABC transpo 98.4 1.6E-06 3.5E-11 82.9 9.2 123 18-152 365-512 (576)
468 TIGR03740 galliderm_ABC gallid 98.4 1.6E-06 3.5E-11 72.1 8.1 27 18-44 25-51 (223)
469 PRK00409 recombination and DNA 98.4 0.00015 3.2E-09 71.0 22.6 21 20-40 328-348 (782)
470 TIGR03771 anch_rpt_ABC anchore 98.4 2.2E-06 4.8E-11 71.2 8.9 27 18-44 5-31 (223)
471 PRK13540 cytochrome c biogenes 98.4 9.6E-07 2.1E-11 72.1 6.6 27 18-44 26-52 (200)
472 PRK15064 ABC transporter ATP-b 98.4 5.6E-07 1.2E-11 84.8 5.9 27 18-44 344-370 (530)
473 KOG0927 Predicted transporter 98.4 3.1E-07 6.6E-12 82.1 3.7 43 115-163 220-266 (614)
474 PRK09452 potA putrescine/sperm 98.4 2.2E-06 4.7E-11 76.5 9.1 27 18-44 39-65 (375)
475 cd03247 ABCC_cytochrome_bd The 98.4 6.8E-06 1.5E-10 65.7 11.2 27 18-44 27-53 (178)
476 COG4525 TauB ABC-type taurine 98.4 4.2E-06 9.2E-11 65.2 9.4 38 18-59 30-67 (259)
477 TIGR03411 urea_trans_UrtD urea 98.4 1.4E-06 3E-11 73.5 7.6 27 18-44 27-53 (242)
478 PRK13641 cbiO cobalt transport 98.4 8.5E-07 1.8E-11 76.6 6.4 35 18-56 32-66 (287)
479 PRK13651 cobalt transporter AT 98.4 2.2E-06 4.7E-11 74.5 8.9 27 18-44 32-58 (305)
480 TIGR03522 GldA_ABC_ATP gliding 98.4 1.1E-06 2.3E-11 76.5 7.0 36 17-56 26-61 (301)
481 cd00267 ABC_ATPase ABC (ATP-bi 98.4 6.8E-06 1.5E-10 64.2 10.9 27 18-44 24-50 (157)
482 PRK11176 lipid transporter ATP 98.4 3.6E-06 7.9E-11 80.5 11.3 126 18-152 368-516 (582)
483 TIGR02324 CP_lyasePhnL phospho 98.4 4.9E-06 1.1E-10 69.3 10.7 27 18-44 33-59 (224)
484 COG1419 FlhF Flagellar GTP-bin 98.3 6E-06 1.3E-10 72.3 11.3 123 18-152 202-353 (407)
485 PRK13648 cbiO cobalt transport 98.3 2.4E-06 5.2E-11 73.2 8.9 27 18-44 34-60 (269)
486 PRK13643 cbiO cobalt transport 98.3 2.8E-06 6E-11 73.4 9.3 35 18-56 31-65 (288)
487 COG4152 ABC-type uncharacteriz 98.3 2.9E-06 6.2E-11 68.5 8.6 145 2-162 13-174 (300)
488 PRK13796 GTPase YqeH; Provisio 98.3 7.9E-07 1.7E-11 79.1 6.1 60 19-81 160-222 (365)
489 COG1122 CbiO ABC-type cobalt t 98.3 3.9E-06 8.4E-11 69.4 9.7 27 18-44 29-55 (235)
490 PRK11174 cysteine/glutathione 98.3 1.6E-06 3.5E-11 83.0 8.6 122 18-152 375-521 (588)
491 COG4559 ABC-type hemin transpo 98.3 4.2E-07 9.1E-12 71.7 3.7 27 18-44 26-52 (259)
492 TIGR00092 GTP-binding protein 98.3 2.4E-06 5.2E-11 74.8 8.8 89 20-114 3-108 (368)
493 PLN03073 ABC transporter F fam 98.3 4.5E-07 9.7E-12 87.5 4.7 34 18-55 534-567 (718)
494 PRK11607 potG putrescine trans 98.3 3.2E-06 6.8E-11 75.5 9.8 27 18-44 44-70 (377)
495 TIGR03719 ABC_ABC_ChvD ATP-bin 98.3 1.9E-06 4.2E-11 81.6 8.9 35 17-55 29-63 (552)
496 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.3 3E-06 6.5E-11 70.4 9.0 34 18-55 47-80 (224)
497 cd03217 ABC_FeS_Assembly ABC-t 98.3 1.9E-06 4E-11 70.3 7.6 27 17-43 24-50 (200)
498 PRK10790 putative multidrug tr 98.3 1.6E-06 3.5E-11 83.0 8.3 125 18-152 366-512 (592)
499 KOG0057 Mitochondrial Fe/S clu 98.3 7.1E-07 1.5E-11 80.0 5.4 124 18-152 377-523 (591)
500 PRK09984 phosphonate/organopho 98.3 2.5E-06 5.3E-11 72.8 8.4 27 18-44 29-55 (262)
No 1
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=100.00 E-value=7.4e-33 Score=226.94 Aligned_cols=204 Identities=42% Similarity=0.748 Sum_probs=168.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
++|+|+|.+|+||||++|+|+|...|.+.....++|..+......+ ++..++|+||||+.+......++.+++.+++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 4899999999999999999999999888766677888888888777 899999999999999887778888999998888
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
...++|+++||++.+ +++..++..++.+..+||.+++++++||+|++|.... ..+++++....+..++.++..|++|
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCE
Confidence 888999999999999 9999999999999999999999999999999999877 6688888843345689999999999
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCHHHHHhHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATEL 227 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 227 (363)
|++|++..........++.+|++.|+.++..+++.+|...+++..++.
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~ 204 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEER 204 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHC
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence 999998844445566899999999999999999999999888766543
No 2
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=100.00 E-value=6.9e-31 Score=213.72 Aligned_cols=195 Identities=51% Similarity=0.860 Sum_probs=170.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
++|+|||.+|+|||||+|+|+|...+.+.....++|..+..+...+ ++..++|+||||+++.......+..++.+++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 4799999999999999999999988766555556777777777777 788999999999998766666777888888877
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
+..++|++++|++++ +++..+...++.+...||..+++++++|+|++|.+.. ..+++++.. ....++.++..|+++
T Consensus 80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~l~~~c~~r 155 (196)
T cd01852 80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKRLLEKCGGR 155 (196)
T ss_pred cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHHHHHHhCCe
Confidence 778999999999998 5999999999999999998888899999999999977 788888886 557899999999999
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 220 (363)
|+.|++... ++..+.++.+|++.|++++.++++.+|..++
T Consensus 156 ~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~ 195 (196)
T cd01852 156 YVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDM 195 (196)
T ss_pred EEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 999999876 7788999999999999999999888887653
No 3
>COG1159 Era GTPase [General function prediction only]
Probab=99.91 E-value=1.4e-23 Score=171.85 Aligned_cols=178 Identities=21% Similarity=0.317 Sum_probs=142.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+.|+|||++++|||||+|.|.|+.. +..+....|++..+......++.++.|+||||++.. ...+.+.+.+.+.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~ 80 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAAR 80 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHH
Confidence 37999999999999999999999988 667888889998888887767889999999999984 5667778888888
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhh-HHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~ 177 (363)
.+..++|+++||+++++.++.++...++.++.. ..|+++++||+|.... .. +..+... +...
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~--~~~l~~~~~~-----~~~~----- 143 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKT-----KTPVILVVNKIDKVKP--KTVLLKLIAF-----LKKL----- 143 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhhc-----CCCeEEEEEccccCCc--HHHHHHHHHH-----HHhh-----
Confidence 888999999999999977999999999888872 1289999999999877 33 3333322 2211
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKR 222 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 222 (363)
+.|......|+..+.++..|++.+...+.+ +..+|..+...
T Consensus 144 ---~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe-g~~~yp~d~it 184 (298)
T COG1159 144 ---LPFKEIVPISALKGDNVDTLLEIIKEYLPE-GPWYYPEDQIT 184 (298)
T ss_pred ---CCcceEEEeeccccCCHHHHHHHHHHhCCC-CCCcCChhhcc
Confidence 133355578999999999999999998876 33446665544
No 4
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.86 E-value=3.6e-20 Score=167.58 Aligned_cols=160 Identities=21% Similarity=0.287 Sum_probs=122.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH---HHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE---FVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---~~~~~~~~~ 96 (363)
.+|+|||++|+|||||+|+|+|...|.+... ...|+......... ++..++||||||+.+...... .+.+.+.++
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~-~~~TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAF-GMGTTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCC-CCCceEEEEEEEEE-CCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 6999999999999999999999987665433 33455554444444 688899999999998643322 233333333
Q ss_pred HhccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcch-----hhHHHHhccCCCchHH
Q 017924 97 LGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE-----KTLEDFLGHECPKPLK 170 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~-----~~l~~~~~~~~~~~~~ 170 (363)
+. ..++|++|||++++ .+.+.++...++.+..+||.++++++|||+||+|...+++ ..+++|+.. ..+.++
T Consensus 197 Ls--k~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~Lq 273 (763)
T TIGR00993 197 IK--KNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIVQ 273 (763)
T ss_pred Hh--cCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHHH
Confidence 32 23689999999876 2333467889999999999999999999999999997533 579999986 677899
Q ss_pred HHHHhcCCceEEec
Q 017924 171 EILQLCDNRCVLFD 184 (363)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (363)
.++..|.+++.+|+
T Consensus 274 ~~Irq~~g~~~l~n 287 (763)
T TIGR00993 274 QAIGQAVGDLRLMN 287 (763)
T ss_pred HHHHHhcCcceecc
Confidence 99999999888876
No 5
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.85 E-value=3.8e-20 Score=155.47 Aligned_cols=155 Identities=24% Similarity=0.307 Sum_probs=113.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+..+|+|+|.+|+|||||+|+|+|...+...... +.+.......... ++..++||||||+++......++.+.+..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~-s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ-SEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC-CcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 45589999999999999999999998764332222 2222232333334 788999999999998543333333333332
Q ss_pred HhccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
+. ..++|+++||.+++ .+++..+...++.+...||.+++.++++++||+|....++..+++|+.+ ..+.++.++..
T Consensus 114 l~--~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~~i~~ 190 (313)
T TIGR00991 114 LL--GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLRVIHS 190 (313)
T ss_pred hh--cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHHHHHH
Confidence 22 24799999997765 4788899999999999999999999999999999886666789999876 56667777765
Q ss_pred c
Q 017924 176 C 176 (363)
Q Consensus 176 ~ 176 (363)
.
T Consensus 191 ~ 191 (313)
T TIGR00991 191 G 191 (313)
T ss_pred H
Confidence 4
No 6
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.82 E-value=4.8e-19 Score=151.13 Aligned_cols=174 Identities=18% Similarity=0.229 Sum_probs=111.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
++|+|+|.+|||||||+|+|+|... +..+..+.|+...+......++..+.++||||+.... ....+.+.+.+..
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~--~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~ 75 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKI--SITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARS 75 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcE--eecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHH
Confidence 4799999999999999999999875 2234444455544444444356678999999987642 2233344444445
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
+...+|++++|+|++...+. +...+..+.. .+ .|+++|+||+|.... ..+...... +.....
T Consensus 76 ~l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~-~~----~p~ilV~NK~Dl~~~--~~~~~~~~~--------~~~~~~-- 137 (270)
T TIGR00436 76 AIGGVDLILFVVDSDQWNGD-GEFVLTKLQN-LK----RPVVLTRNKLDNKFK--DKLLPLIDK--------YAILED-- 137 (270)
T ss_pred HHhhCCEEEEEEECCCCCch-HHHHHHHHHh-cC----CCEEEEEECeeCCCH--HHHHHHHHH--------HHhhcC--
Confidence 55688999999999844333 3334444433 22 389999999998744 333222222 222211
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 220 (363)
+......|+..+.++++|++.+...+... ..+|..+.
T Consensus 138 ---~~~v~~iSA~~g~gi~~L~~~l~~~l~~~-~~~~~~~~ 174 (270)
T TIGR00436 138 ---FKDIVPISALTGDNTSFLAAFIEVHLPEG-PFRYPEDY 174 (270)
T ss_pred ---CCceEEEecCCCCCHHHHHHHHHHhCCCC-CCCCCCcc
Confidence 11234678889999999999998887552 23355443
No 7
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.81 E-value=1.3e-18 Score=144.96 Aligned_cols=132 Identities=28% Similarity=0.335 Sum_probs=99.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC---ChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA---GSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~ 93 (363)
....+|+|+|.+|+|||||+|+|+|...+..... .+.|.....+...+ ++..++||||||+.+... ....+...+
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~-~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAF-QSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 4458999999999999999999999876443322 23455555555555 788899999999987632 122333334
Q ss_pred HHHHhccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 94 VKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
.+++. ....|+++||..++ .+++..+...++.+...||.+++.++++|+||+|....
T Consensus 107 ~~~l~--~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLK--KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHh--ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 43332 23678999998776 47888889999999999999889999999999998865
No 8
>PRK00089 era GTPase Era; Reviewed
Probab=99.80 E-value=3.4e-18 Score=148.14 Aligned_cols=176 Identities=20% Similarity=0.315 Sum_probs=116.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+.|+|+|.+|||||||+|+|+|.... ..+....|+...+......++..++++||||+.... ..+.+.+.....
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~--~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~ 79 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKIS--IVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAW 79 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCcee--ecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHH
Confidence 379999999999999999999998752 233344455444444433355789999999988643 233444444555
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.....+|++++|+|+++.++..+...+..+... + .|+++|+||+|+.... ..+...+.. +. ...+
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-~----~pvilVlNKiDl~~~~-~~l~~~~~~-----l~---~~~~- 144 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-K----TPVILVLNKIDLVKDK-EELLPLLEE-----LS---ELMD- 144 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-C----CCEEEEEECCcCCCCH-HHHHHHHHH-----HH---hhCC-
Confidence 556688999999999865777666666655521 1 3899999999998331 333333333 22 2111
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE 219 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 219 (363)
+......|+..+.++.+|++.+...+.... .+|..+
T Consensus 145 ----~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~-~~y~~~ 180 (292)
T PRK00089 145 ----FAEIVPISALKGDNVDELLDVIAKYLPEGP-PYYPED 180 (292)
T ss_pred ----CCeEEEecCCCCCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence 222335677888999999999988876532 345544
No 9
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.79 E-value=2.5e-18 Score=131.22 Aligned_cols=156 Identities=21% Similarity=0.262 Sum_probs=95.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
++|+++|.+|+|||||+|+|+|.... .+.. .+.|++.....+.+ .+..+.++|+||+.+......+ +.+.....
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~-v~n~-pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~e--e~v~~~~l- 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQK-VGNW-PGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEE--ERVARDYL- 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEE-EEES-TTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHH--HHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCce-ecCC-CCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcH--HHHHHHHH-
Confidence 47999999999999999999999853 2232 34566666666666 7789999999998775433321 22222221
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
.....|++++|+|++ ++.. +...+.++.++ | .|+++++||+|.....+..++ ...+-+..+..
T Consensus 75 ~~~~~D~ii~VvDa~-~l~r-~l~l~~ql~e~-g----~P~vvvlN~~D~a~~~g~~id----------~~~Ls~~Lg~p 137 (156)
T PF02421_consen 75 LSEKPDLIIVVVDAT-NLER-NLYLTLQLLEL-G----IPVVVVLNKMDEAERKGIEID----------AEKLSERLGVP 137 (156)
T ss_dssp HHTSSSEEEEEEEGG-GHHH-HHHHHHHHHHT-T----SSEEEEEETHHHHHHTTEEE-----------HHHHHHHHTS-
T ss_pred hhcCCCEEEEECCCC-CHHH-HHHHHHHHHHc-C----CCEEEEEeCHHHHHHcCCEEC----------HHHHHHHhCCC
Confidence 135789999999998 4422 23333333332 3 399999999998755222211 22233333433
Q ss_pred eEEecCCCcccccchhHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLV 204 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l 204 (363)
.+ ..++..+.++++|++.|
T Consensus 138 vi------~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 138 VI------PVSARTGEGIDELKDAI 156 (156)
T ss_dssp EE------EEBTTTTBTHHHHHHHH
T ss_pred EE------EEEeCCCcCHHHHHhhC
Confidence 33 45677888999998764
No 10
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.77 E-value=1.6e-17 Score=144.26 Aligned_cols=176 Identities=22% Similarity=0.247 Sum_probs=121.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE-EEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.++|+|||++++|||||+|+|+|+.... .+....|+...+.. +.+ +++.+.++||.|+..-..-.+.+...-....
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~I--v~~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVI--VSDIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEE--ecCCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 4899999999999999999999998733 44444455555544 444 8999999999998643211110000001111
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+...++++++|+|++..++..+......+.+. |. .++||+||||.+..+...++++... +...+...+
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-g~----~~vIvvNKWDl~~~~~~~~~~~k~~-----i~~~l~~l~ 324 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEA-GR----GIVIVVNKWDLVEEDEATMEEFKKK-----LRRKLPFLD 324 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-CC----CeEEEEEccccCCchhhHHHHHHHH-----HHHHhcccc
Confidence 2233567999999999988999998888877764 33 7999999999987543455555444 444443322
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHHHcC
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 212 (363)
|......|+.++.++..+++.+........
T Consensus 325 -----~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~ 354 (444)
T COG1160 325 -----FAPIVFISALTGQGLDKLFEAIKEIYECAT 354 (444)
T ss_pred -----CCeEEEEEecCCCChHHHHHHHHHHHHHhc
Confidence 333346788899999999999988876643
No 11
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.77 E-value=1.2e-17 Score=144.97 Aligned_cols=160 Identities=23% Similarity=0.238 Sum_probs=117.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|||++|+|||||+|.|+|+.. +.+...+ +|.+-.+....| .+..+.++||.|+.+.. .+.+...+.....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~--AIV~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~ 78 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI--AIVSDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDGD--EDELQELIREQAL 78 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee--eEeecCCCCccCCccceeEE-cCceEEEEECCCCCcCC--chHHHHHHHHHHH
Confidence 5899999999999999999999976 3233333 455555556677 78889999999998632 3456667777777
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.+...+|+++||+|+...++..+....+++.. .+. |+++|+||+|.... +. . ..++...-
T Consensus 79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~-~~k----pviLvvNK~D~~~~--e~---~--------~~efyslG-- 138 (444)
T COG1160 79 IAIEEADVILFVVDGREGITPADEEIAKILRR-SKK----PVILVVNKIDNLKA--EE---L--------AYEFYSLG-- 138 (444)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh-cCC----CEEEEEEcccCchh--hh---h--------HHHHHhcC--
Confidence 77788999999999987899999998888873 222 89999999997733 11 1 22233221
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
|......|+..+.++.+|++.+...+
T Consensus 139 ----~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 139 ----FGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred ----CCCceEeehhhccCHHHHHHHHHhhc
Confidence 22223568888999999999888775
No 12
>PRK15494 era GTPase Era; Provisional
Probab=99.76 E-value=1.6e-17 Score=145.54 Aligned_cols=175 Identities=21% Similarity=0.235 Sum_probs=111.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..+|+|+|.+|+|||||+|.|+|... +..+....|+...+. .+.. ++..+.|+||||+.... ..+...+.+..
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~--~ivs~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~---~~l~~~~~r~~ 125 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKL--SIVTPKVQTTRSIITGIITL-KDTQVILYDTPGIFEPK---GSLEKAMVRCA 125 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCce--eeccCCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCc---ccHHHHHHHHH
Confidence 35999999999999999999998765 222333334333332 2334 67789999999986532 22344455544
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..++.++|++++|+|....+...+..++..+... + .+.++|+||+|+... .+.+. .+.+....
T Consensus 126 ~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~----~p~IlViNKiDl~~~---~~~~~---------~~~l~~~~ 188 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-N----IVPIFLLNKIDIESK---YLNDI---------KAFLTENH 188 (339)
T ss_pred HHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEEhhcCccc---cHHHH---------HHHHHhcC
Confidence 4556789999999998766776666566555432 2 267889999998533 12222 12222211
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELK 221 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 221 (363)
. +......|+..+.++.+|++.+...+.. +..+|..+..
T Consensus 189 ~----~~~i~~iSAktg~gv~eL~~~L~~~l~~-~~~~~~~~~~ 227 (339)
T PRK15494 189 P----DSLLFPISALSGKNIDGLLEYITSKAKI-SPWLYAEDDI 227 (339)
T ss_pred C----CcEEEEEeccCccCHHHHHHHHHHhCCC-CCCCCCCCCC
Confidence 1 1122366888899999999999887765 3334555543
No 13
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.74 E-value=3.8e-16 Score=136.16 Aligned_cols=165 Identities=21% Similarity=0.253 Sum_probs=115.5
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
-..+.+|+|+|++|+|||||+|+|++++. +.++..+.|+++.+......+|..+.++||.|+..+ ++.+.+.=..
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~--AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet---~d~VE~iGIe 288 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDR--AIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRET---DDVVERIGIE 288 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCc--eEecCCCCCccceEEEEEEECCEEEEEEecCCcccC---ccHHHHHHHH
Confidence 35678999999999999999999999987 446666667766666554449999999999999874 3333332222
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
........+|.++||+|++..++..+...+. .... .+++++|+||.|+... ...... ..
T Consensus 289 Rs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~---~~~~---~~~~i~v~NK~DL~~~--~~~~~~-------------~~ 347 (454)
T COG0486 289 RAKKAIEEADLVLFVLDASQPLDKEDLALIE---LLPK---KKPIIVVLNKADLVSK--IELESE-------------KL 347 (454)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCchhhHHHHH---hccc---CCCEEEEEechhcccc--cccchh-------------hc
Confidence 2333446789999999998556777776666 1111 1289999999999876 221111 11
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
.....+ ...|++++.++..|.+.|...+...
T Consensus 348 ~~~~~~-----i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 348 ANGDAI-----ISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred cCCCce-----EEEEecCccCHHHHHHHHHHHHhhc
Confidence 111111 2457788899999999998887653
No 14
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=8e-16 Score=119.76 Aligned_cols=171 Identities=16% Similarity=0.156 Sum_probs=107.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH---HHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE---FVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---~~~~~~~ 94 (363)
...-|+++|++++|||||||+|+|+....- .+..+..| ..+..+.+ + ..+.++|.||++....+.. .+...+.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LAr-tSktPGrT-q~iNff~~-~-~~~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLAR-TSKTPGRT-QLINFFEV-D-DELRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceee-cCCCCCcc-ceeEEEEe-c-CcEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 456899999999999999999999763111 22222222 23333333 2 2367999999998776552 2333444
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.++... ....++++++|+.+.....|+..++++... +- ++++++||+|.+.. ......+.. ....+.
T Consensus 99 ~YL~~R-~~L~~vvlliD~r~~~~~~D~em~~~l~~~-~i----~~~vv~tK~DKi~~--~~~~k~l~~-----v~~~l~ 165 (200)
T COG0218 99 EYLEKR-ANLKGVVLLIDARHPPKDLDREMIEFLLEL-GI----PVIVVLTKADKLKK--SERNKQLNK-----VAEELK 165 (200)
T ss_pred HHHhhc-hhheEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CeEEEEEccccCCh--hHHHHHHHH-----HHHHhc
Confidence 444332 347889999999878888898888887764 32 89999999999976 333333333 222221
Q ss_pred h-cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 L-CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
. ...... ....|+..+.++++|...|...+.
T Consensus 166 ~~~~~~~~----~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 166 KPPPDDQW----VVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred CCCCccce----EEEEecccccCHHHHHHHHHHHhh
Confidence 1 111100 112345566778888888877654
No 15
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.71 E-value=1.4e-15 Score=139.43 Aligned_cols=174 Identities=22% Similarity=0.241 Sum_probs=110.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|+|.+|+|||||+|+|+|..........+ .|.+.....+.. ++..+.++||||+.........+........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~g-tt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAG-TTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCC-ceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 45899999999999999999999887533322222 233333333334 6778899999998653322211111111112
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+...+|++++|+|++..++..+...+..+... + .++++++||||+... ..++++... +...+....
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-~----~~~ivv~NK~Dl~~~--~~~~~~~~~-----~~~~l~~~~ 317 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEA-G----RALVIVVNKWDLVDE--KTMEEFKKE-----LRRRLPFLD 317 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCCCH--HHHHHHHHH-----HHHhccccc
Confidence 2234577999999999877888777766655442 2 289999999998844 334333333 332222211
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+......|+..+.++.++++.+......
T Consensus 318 -----~~~i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 318 -----YAPIVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred -----CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1223467888899999999988877654
No 16
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.71 E-value=2.7e-16 Score=116.63 Aligned_cols=116 Identities=25% Similarity=0.336 Sum_probs=75.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|.+|+|||||+|+|+|.......... ..|....+..+.+ ++..+.++||||+.+....... .+.+..++...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~-~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~-~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIP-GTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDND-GKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSST-TSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHH-HHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccc-cceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHH-HHHHHHHHHHH
Confidence 6899999999999999999986543332322 2343443334445 7788889999999875322221 12233333333
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeC
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~ 146 (363)
..+|+++||+++++.....+...++.+. .+ .++++|+||
T Consensus 78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~~----~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNPITEDDKNILRELK--NK----KPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSHSHHHHHHHHHHHH--TT----SEEEEEEES
T ss_pred -HHCCEEEEEEECCCCCCHHHHHHHHHHh--cC----CCEEEEEcC
Confidence 6789999999987433444555556553 22 389999997
No 17
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.71 E-value=1e-15 Score=121.61 Aligned_cols=165 Identities=23% Similarity=0.277 Sum_probs=99.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|.+|+|||||+|.|+|...... .....++...........+..+.++||||+....... ...+.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~---~~~~~~~~~ 77 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIV--SPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL---GERMVKAAW 77 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEec--cCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH---HHHHHHHHH
Confidence 37999999999999999999998764221 2222232222222222245678899999987643221 112333333
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
......|+++++++.++.++......+..+... + .++++|+||+|..... ..+.+++.. +. ....
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-~----~~~iiv~nK~Dl~~~~-~~~~~~~~~-----~~---~~~~- 142 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-K----TPVILVLNKIDLVKDK-EDLLPLLEK-----LK---ELGP- 142 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-C----CCEEEEEEchhccccH-HHHHHHHHH-----HH---hccC-
Confidence 345678999999999855555555555555432 1 2899999999987321 333333333 22 1111
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
+......++..+.++.++++.|.+.
T Consensus 143 ----~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 143 ----FAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred ----CCceEEEEeccCCChHHHHHHHHhh
Confidence 1122345667788888888877653
No 18
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.70 E-value=1.3e-15 Score=120.55 Aligned_cols=160 Identities=19% Similarity=0.211 Sum_probs=95.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcccc--cccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKA--FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+|+|+|..|+|||||+|+|+|... +.. ....+.|.........+..+..+.++||||... +...+.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~ 69 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPE-EKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNML 69 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchh-hhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHH
Confidence 699999999999999999997532 111 111223444444444442267889999999532 222233
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
..+.++|++++|+|+++.+.......+..+.. .+. .++++++||+|+... ..+...... +.+.+...+.
T Consensus 70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~~---~~~ilv~NK~Dl~~~--~~~~~~~~~-----~~~~~~~~~~ 138 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQTREHLEILEL-LGI---KRGLVVLTKADLVDE--DWLELVEEE-----IRELLAGTFL 138 (164)
T ss_pred hhhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hCC---CcEEEEEECccccCH--HHHHHHHHH-----HHHHHHhcCc
Confidence 34567899999999874444444444443332 222 279999999998754 222222222 3333332110
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
. .......|++.+.+++++++.+..
T Consensus 139 ~---~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 139 A---DAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred C---CCcEEEEeCCCCcCHHHHHHHHhh
Confidence 0 011235677888899998887643
No 19
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.70 E-value=2.5e-15 Score=137.61 Aligned_cols=174 Identities=24% Similarity=0.239 Sum_probs=109.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|.+|+|||||+|+|+|.......... +.|.+.....+.. ++..+.++||||+.........+.........
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~-gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIA-GTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCC-CceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 469999999999999999999987643222222 2233333333344 67789999999986543222111111111112
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.+...+|++++|+|+++.++..+...+..+... + .++++|+||+|+... ...++++... +...+.....
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~~~-~~~~~~~~~~-----~~~~~~~~~~ 318 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLRIAGLILEA-G----KALVIVVNKWDLVKD-EKTREEFKKE-----LRRKLPFLDF 318 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-C----CcEEEEEECcccCCC-HHHHHHHHHH-----HHHhcccCCC
Confidence 234578999999999878888777666655442 2 289999999999822 1334444333 3333222221
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
......|+..+.++.++++.+......
T Consensus 319 -----~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 319 -----APIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred -----CceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 123367888999999999988887654
No 20
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=2.7e-15 Score=133.11 Aligned_cols=177 Identities=18% Similarity=0.160 Sum_probs=106.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee-eEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
-|+|||.+|||||||||+|++... ..+..+.|+. ..+..+.+.+...++|+||||+.........+...+.+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~---~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~---- 233 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP---KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLK---- 233 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc---cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHH----
Confidence 699999999999999999998754 2344444443 33444444234578999999997633222223444443
Q ss_pred cCCCccEEEEEeecCCCC----C-HHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 100 AKDGIHAFLVVFSVTNRF----S-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~----~-~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
...+++++++|+|++ .+ . .....+++.+......-...|+++|+||+|+... ..+.+.+.. +..
T Consensus 234 ~i~radvlL~VVD~s-~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~--------l~~ 302 (390)
T PRK12298 234 HLERCRVLLHLIDIA-PIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKA--------IVE 302 (390)
T ss_pred HHHhCCEEEEEeccC-cccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHH--------HHH
Confidence 345779999999976 22 1 2223344444433211112489999999998754 444333333 222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 220 (363)
...... .....|+..+.++.+|++.|...+... ..+|..+.
T Consensus 303 ~~~~~~----~Vi~ISA~tg~GIdeLl~~I~~~L~~~-~~~~~~~~ 343 (390)
T PRK12298 303 ALGWEG----PVYLISAASGLGVKELCWDLMTFIEEN-PREEAEEA 343 (390)
T ss_pred HhCCCC----CEEEEECCCCcCHHHHHHHHHHHhhhC-cccCCccc
Confidence 212110 123568888899999999998888653 23344433
No 21
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.69 E-value=3.8e-14 Score=119.76 Aligned_cols=151 Identities=24% Similarity=0.351 Sum_probs=103.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccc---cCC---CCCceeeEeEEEEee-CC--cEEEEEeCCCCCCCCCChH--
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS---AGS---SGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSE-- 87 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~---~~~---~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~-- 87 (363)
..+|+++|.+|.|||||+|+|+|....... ... ...++....+..... ++ ..++++|||||+|....+.
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w 102 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW 102 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence 469999999999999999999988432111 011 112333444444332 22 3678999999998654321
Q ss_pred H-----HHHHHHHHH----------hccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 88 F-----VGKEIVKCL----------GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 88 ~-----~~~~~~~~~----------~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
+ +..++..++ ...+.++|++||++..+ +.++.-+...++.+...+ |+|-|+.|.|.++
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~v------NlIPVI~KaD~lT 176 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRV------NLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhccc------CeeeeeeccccCC
Confidence 1 222222222 23346899999999865 788888877777666543 8999999999998
Q ss_pred cchhhHHHHhccCCCchHHHHHHhcCCceEE
Q 017924 152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVL 182 (363)
Q Consensus 152 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (363)
. +.|..+.+. +.+.+..+..++|.
T Consensus 177 ~--~El~~~K~~-----I~~~i~~~nI~vf~ 200 (373)
T COG5019 177 D--DELAEFKER-----IREDLEQYNIPVFD 200 (373)
T ss_pred H--HHHHHHHHH-----HHHHHHHhCCceeC
Confidence 8 888888887 88788877766664
No 22
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.69 E-value=1.3e-15 Score=121.49 Aligned_cols=164 Identities=21% Similarity=0.179 Sum_probs=93.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCc-EEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ-VVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.|+|||.+|||||||+|.|+|.... .....+ .|....+..+.. .+. .+.++||||+.+.......+...+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-v~~~~~-~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~---- 74 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-IADYPF-TTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLR---- 74 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-ccCCCc-cccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHH----
Confidence 6899999999999999999976531 111111 233333344444 444 88999999985422111112222222
Q ss_pred cCCCccEEEEEeecCCC-CCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 100 AKDGIHAFLVVFSVTNR-FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~-~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
....+|++++|+|+++. -+... ..+++.+..........++++|+||+|+... ....+.+.. ......
T Consensus 75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~--------~~~~~~ 144 (170)
T cd01898 75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFELLKE--------LLKELW 144 (170)
T ss_pred HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHHHHHH--------HHhhCC
Confidence 22357999999999733 22222 2334444443211122489999999998755 333333222 222211
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
...+ ...|++.+.++.++++.+..
T Consensus 145 ~~~~-----~~~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 145 GKPV-----FPISALTGEGLDELLRKLAE 168 (170)
T ss_pred CCCE-----EEEecCCCCCHHHHHHHHHh
Confidence 1111 24677788899999887654
No 23
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.69 E-value=2.3e-15 Score=120.32 Aligned_cols=170 Identities=21% Similarity=0.242 Sum_probs=97.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+++|..|+|||||+|+|++.......... ..+.......+.. ++..+.++||||+.+.......+..........
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIA-GTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCC-CCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 68999999999999999999987532221211 2222222223333 566788999999876421111111111011122
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
.....|++++|+|+.+..+......+..+.. .+ .++++++||+|+.......++.+... +...+.....
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-~~----~~~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~- 149 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLRIAGLILE-EG----KALVIVVNKWDLVEKDSKTMKEFKKE-----IRRKLPFLDY- 149 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHHHHHHHHh-cC----CCEEEEEeccccCCccHHHHHHHHHH-----HHhhcccccC-
Confidence 3357899999999986666555444433322 12 38999999999875421223322222 2222221111
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
......|+..+.++.++++.+..
T Consensus 150 ----~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 150 ----APIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred ----CceEEEeccCCCCHHHHHHHHHH
Confidence 12235677788888888887654
No 24
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.68 E-value=1.2e-15 Score=124.66 Aligned_cols=165 Identities=13% Similarity=0.077 Sum_probs=98.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc-ccccccCCCCCceeeEeEEEEee--------------------------------
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVLK-------------------------------- 66 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~-------------------------------- 66 (363)
.+|+|+|++|+|||||+++|++.. .+.........+....+....+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 379999999999999999998772 22222223334444443333221
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC-CCHHHHHHHHHHHHHhccccccceEEEEe
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~i~v~n 145 (363)
....++|+||||.. .+...+..+...+|++++|+|++.. ........+..+.. .+. .++++|+|
T Consensus 81 ~~~~i~~iDtPG~~-----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvN 145 (203)
T cd01888 81 LVRHVSFVDCPGHE-----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQN 145 (203)
T ss_pred cccEEEEEECCChH-----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEE
Confidence 02678999999932 2333444444578999999998732 23333344444322 222 27899999
Q ss_pred CCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 146 ~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
|+|+... ..+...+.. +...+..... ........|+..+.++.+|++.+.+.+.
T Consensus 146 K~Dl~~~--~~~~~~~~~-----i~~~~~~~~~---~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 146 KIDLVKE--EQALENYEQ-----IKKFVKGTIA---ENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred chhccCH--HHHHHHHHH-----HHHHHhcccc---CCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 9999754 333333333 3333332110 0112235688889999999998876543
No 25
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.67 E-value=4.2e-15 Score=118.24 Aligned_cols=162 Identities=22% Similarity=0.184 Sum_probs=93.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH-HHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~~~ 99 (363)
+|+|+|.+|+|||||+|.|++...... .. ...|.........+ .+..++++||||+.+...... .+.......+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~-~~-~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~-- 76 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVA-PY-PFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAITAL-- 76 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccC-CC-CCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHHHHH--
Confidence 799999999999999999998754111 11 11233333333333 567899999999854321111 1111111111
Q ss_pred cCCCccEEEEEeecCCCCC---HHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 100 AKDGIHAFLVVFSVTNRFS---QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
....|++++|+|+++..+ .....++..+...+. ..|+++|+||+|.... ..+.. ... .....
T Consensus 77 -~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~--~~~~~-~~~--------~~~~~ 141 (168)
T cd01897 77 -AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF--EDLSE-IEE--------EEELE 141 (168)
T ss_pred -HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch--hhHHH-HHH--------hhhhc
Confidence 123578999999874322 222344555554332 2389999999998755 33322 111 11111
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
... ....|++++.++.++++.+.+.+
T Consensus 142 ~~~------~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 142 GEE------VLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred cCc------eEEEEecccCCHHHHHHHHHHHh
Confidence 111 23678889999999999876653
No 26
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.67 E-value=1.1e-14 Score=118.87 Aligned_cols=169 Identities=15% Similarity=0.247 Sum_probs=99.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc-ccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~~ 94 (363)
...+|+|+|.+|+|||||+|.|++.. ........ +.|..... +.+ +..+.++||||+........ +....+.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~-~~t~~~~~--~~~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTP-GRTQLINF--FEV--NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCC-CceeEEEE--Eec--CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 44789999999999999999999864 21111111 12322222 222 46788999999765332211 1111222
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
..........+++++++|.+...+..+...++.+.. .+ .++++++||+|.... ...+..... +...+.
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~~----~~~iiv~nK~Dl~~~--~~~~~~~~~-----i~~~l~ 165 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-YG----IPVLIVLTKADKLKK--GERKKQLKK-----VRKALK 165 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-cC----CcEEEEEECcccCCH--HHHHHHHHH-----HHHHHH
Confidence 222223345678888888775666555544444432 22 278999999999865 434333333 333333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.....+ ...|+..+.++.++++.+...++
T Consensus 166 ~~~~~~------~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 166 FGDDEV------ILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred hcCCce------EEEEcCCCCCHHHHHHHHHHHhc
Confidence 221222 25677788899999998877664
No 27
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=8.2e-16 Score=124.57 Aligned_cols=175 Identities=17% Similarity=0.169 Sum_probs=106.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+..+|+|+|.+|+|||||||+|++..... .+.-+++++...+.....++..++++||||+++....+.+....+...+
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~--v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKE--VSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCce--eeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 44688899999999999999999544311 2212223333333332226788999999999997655554444455544
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcc----------hhhHHHHhccCCCc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH----------EKTLEDFLGHECPK 167 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~----------~~~l~~~~~~~~~~ 167 (363)
.+.|.++++++++++.-+-+...++.+.....+ +++++++|.+|..... ...+.+++..
T Consensus 116 ----~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~---- 184 (296)
T COG3596 116 ----PKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE---- 184 (296)
T ss_pred ----hhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhccccccccccCCCCHHHHHHHHH----
Confidence 466889999998766656666666666655443 3899999999987551 1123333322
Q ss_pred hHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
-.+..+.++.........+.....++.+|...+-..+.
T Consensus 185 ----k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 185 ----KAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred ----HHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 22222222222333333345566777777776666554
No 28
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.67 E-value=3.5e-15 Score=117.22 Aligned_cols=155 Identities=23% Similarity=0.245 Sum_probs=96.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+.+|+++|++|+|||||+|+|++......... .+.+.......+.+ .+..++++||||+.+.... ..........
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~---~~~~~~~~~~ 75 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDI-AGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDE---IEKIGIERAR 75 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCC-CCCccceEEEEEEe-CCEEEEEEECCCcCCCcch---HHHHHHHHHH
Confidence 46899999999999999999998763111111 22233333333344 5678899999998764322 1111122222
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
....++|++++|+|+++..+..+...+.. ..+ .++++|+||+|.... ... . ......
T Consensus 76 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~----~~vi~v~nK~D~~~~--~~~-----~---------~~~~~~ 132 (157)
T cd04164 76 EAIEEADLVLFVIDASRGLDEEDLEILEL---PAD----KPIIVVLNKSDLLPD--SEL-----L---------SLLAGK 132 (157)
T ss_pred HHHhhCCEEEEEEECCCCCCHHHHHHHHh---hcC----CCEEEEEEchhcCCc--ccc-----c---------cccCCC
Confidence 34457899999999986666655544433 222 389999999998755 211 0 011122
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
.++ ..|+.++.++.++++.|...
T Consensus 133 ~~~------~~Sa~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 133 PII------AISAKTGEGLDELKEALLEL 155 (157)
T ss_pred ceE------EEECCCCCCHHHHHHHHHHh
Confidence 222 45667788999998887664
No 29
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=1e-14 Score=134.14 Aligned_cols=174 Identities=16% Similarity=0.184 Sum_probs=105.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH-
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC- 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~- 96 (363)
...+|+|||.+|+|||||+|.|+|..........+ .|.+.....+.+ ++..+.++||||+......... ...+...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~g-tT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~~~-~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAG-TTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQASG-HEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC-ccCCcceEEEEE-CCEEEEEEECCCccccccccch-HHHHHHHH
Confidence 35799999999999999999999876422222222 233332333344 6778889999997532111100 1111111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..++|++++|+|++...+..+...+..+.. .+ .++++|+||+|+... .....+... +...+...
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~-~~----~piIiV~NK~Dl~~~--~~~~~~~~~-----i~~~l~~~ 354 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE-AG----RALVLAFNKWDLVDE--DRRYYLERE-----IDRELAQV 354 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECcccCCh--hHHHHHHHH-----HHHhcccC
Confidence 1123457899999999987788777766555443 12 389999999998754 221111111 11111111
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
. +.....+|++.+.++.+++..+.......
T Consensus 355 ~-----~~~~~~~SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 355 P-----WAPRVNISAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred C-----CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 1 11223578999999999999998877653
No 30
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.66 E-value=7.5e-15 Score=117.79 Aligned_cols=134 Identities=17% Similarity=0.268 Sum_probs=82.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCC-CCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH-
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV- 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~- 94 (363)
....+|+|+|.+|+|||||+|.|++.... ...+.. +.|.....+ .. + ..+.++||||+......... ...+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~-~~~~~~~~~t~~~~~~--~~-~-~~~~liDtpG~~~~~~~~~~-~~~~~~ 89 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKL-ARTSKTPGRTQLINFF--EV-N-DGFRLVDLPGYGYAKVSKEE-KEKWQK 89 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCc-ccccCCCCcceEEEEE--Ee-C-CcEEEEeCCCCccccCChhH-HHHHHH
Confidence 44579999999999999999999987421 111111 123333322 22 2 36889999998764322211 11221
Q ss_pred --HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc
Q 017924 95 --KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 95 --~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
..+.......+++++|+|++++++..+...+..+... + .|+++++||+|.... ...+..+..
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-~----~pviiv~nK~D~~~~--~~~~~~~~~ 153 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-G----IPVLIVLTKADKLKK--SELNKQLKK 153 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECcccCCH--HHHHHHHHH
Confidence 1112223356899999999877887777666655432 2 389999999998755 444444444
No 31
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.65 E-value=6.2e-15 Score=125.38 Aligned_cols=153 Identities=23% Similarity=0.279 Sum_probs=98.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccC------CCCCceeeEeEE--EEeeCC--cEEEEEeCCCCCCCCCChHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKT--TVLKDG--QVVNVIDTPGLFDLSAGSEF 88 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~------~~~~t~~~~~~~--~~~~~~--~~~~l~DtpG~~~~~~~~~~ 88 (363)
..+|+|+|.+|+|||||+|+|++...+..... ....|+...... +.. ++ ..++++||||+++..... .
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~iiDTpGfgd~~~~~-~ 81 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLTVIDTPGFGDNINNS-D 81 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEEEEecCCccccccch-h
Confidence 36999999999999999999998876433211 112233222222 222 34 368999999998764322 2
Q ss_pred HHHHHHH--------HH----------hccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCC
Q 017924 89 VGKEIVK--------CL----------GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (363)
Q Consensus 89 ~~~~~~~--------~~----------~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~ 149 (363)
..+.+.. ++ .....++|+++|+++.+ +.+...+...++.+.. . .|+++|+||+|.
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~----~--v~vi~VinK~D~ 155 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK----R--VNIIPVIAKADT 155 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc----c--CCEEEEEECCCc
Confidence 2222221 11 12234689999999876 4566777666666643 2 289999999999
Q ss_pred CCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCC
Q 017924 150 LEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (363)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (363)
+.. ..+..+... +.+.+...+..++.|...
T Consensus 156 l~~--~e~~~~k~~-----i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 156 LTP--EELKEFKQR-----IMEDIEEHNIKIYKFPED 185 (276)
T ss_pred CCH--HHHHHHHHH-----HHHHHHHcCCceECCCCC
Confidence 865 555555555 667777777777766543
No 32
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.65 E-value=3.2e-15 Score=117.48 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=96.5
Q ss_pred EEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCC
Q 017924 23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD 102 (363)
Q Consensus 23 ~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
+|+|.+|+|||||+|.|++........ ..+.|.......... .+..+.++||||+.+... .+.+.+.........
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVED-TPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecC-CCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 589999999999999999875321112 122333344444444 677899999999876421 223334333333445
Q ss_pred CccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEE
Q 017924 103 GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL 182 (363)
Q Consensus 103 ~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (363)
.+|++++|+++.+.++..+...+..+... + .++++|+||+|.... .... . .+...+.
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-~----~piiiv~nK~D~~~~--~~~~---~---------~~~~~~~---- 132 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKS-K----KPVILVVNKVDNIKE--EDEA---A---------EFYSLGF---- 132 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhc-C----CCEEEEEECcccCCh--HHHH---H---------HHHhcCC----
Confidence 78999999998756665555555555432 2 389999999998765 2221 1 1111111
Q ss_pred ecCCCcccccchhHHHHHHHHHHH
Q 017924 183 FDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 183 ~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
......|+..+.++.++++.+.+
T Consensus 133 -~~~~~~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 133 -GEPIPISAEHGRGIGDLLDAILE 155 (157)
T ss_pred -CCeEEEecccCCCHHHHHHHHHh
Confidence 01234677778899998887654
No 33
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.65 E-value=2.9e-15 Score=121.13 Aligned_cols=165 Identities=20% Similarity=0.286 Sum_probs=107.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccc----------------ccCCCCCceeeEeEEEE--eeCCcEEEEEeCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA----------------SAGSSGVTKTCEMKTTV--LKDGQVVNVIDTPGLF 80 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~----------------~~~~~~~t~~~~~~~~~--~~~~~~~~l~DtpG~~ 80 (363)
-.+|+|+|+.|+|||||+++|++...... .......|.......+. . .+..++++||||..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGHE 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSSH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeeccccccc
Confidence 37999999999999999999985542100 01113445555555555 4 78899999999953
Q ss_pred CCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHH
Q 017924 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF 160 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~ 160 (363)
+ +...+..+...+|++++|+|+...+.......+..+... +. |+++++||+|... ..+.+.
T Consensus 82 ~-----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-~~----p~ivvlNK~D~~~---~~~~~~ 142 (188)
T PF00009_consen 82 D-----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL-GI----PIIVVLNKMDLIE---KELEEI 142 (188)
T ss_dssp H-----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-T-----SEEEEEETCTSSH---HHHHHH
T ss_pred c-----------eeecccceecccccceeeeeccccccccccccccccccc-cc----ceEEeeeeccchh---hhHHHH
Confidence 3 222233334567999999999867887777777776553 22 7999999999983 344444
Q ss_pred hccCCCchHH-HHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 161 LGHECPKPLK-EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 161 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+.. +. .++......-..+-.....|+..+.++.+|++.+...+
T Consensus 143 ~~~-----~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 143 IEE-----IKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHH-----HHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HHH-----HHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 444 33 33333321100000122568888999999999887754
No 34
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.65 E-value=7.8e-15 Score=120.43 Aligned_cols=163 Identities=24% Similarity=0.214 Sum_probs=95.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|.+|||||||+|.|++...+... ....|.......+.+.+...+.++||||+.+... ......+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~ 114 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAED--QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRST 114 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCC--ccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHH
Confidence 33479999999999999999999987532211 1122333333344442334889999999854321 1122223222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHH-HHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
+ .....+|++++|+|+++..+..... +...+......+ .++++|+||+|+... .... . ....
T Consensus 115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~~~--~~~~----~--------~~~~ 177 (204)
T cd01878 115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLLDD--EELE----E--------RLEA 177 (204)
T ss_pred H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccCCh--HHHH----H--------Hhhc
Confidence 2 2234689999999997454444333 233333322112 389999999998755 2221 1 1111
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.... ....|+..+.++.++++.|..
T Consensus 178 ~~~~------~~~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 178 GRPD------AVFISAKTGEGLDELLEAIEE 202 (204)
T ss_pred CCCc------eEEEEcCCCCCHHHHHHHHHh
Confidence 1111 235677888899999887654
No 35
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.65 E-value=3.6e-14 Score=129.34 Aligned_cols=178 Identities=19% Similarity=0.259 Sum_probs=115.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+++|.+|+|||||+|+|+|..... ...-++|++.....+.. .++.+.++|.||..+....+.+ +.+.+.+.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~V--gNwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~D--E~Var~~l 77 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKV--GNWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSED--EKVARDFL 77 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCcee--cCCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCch--HHHHHHHH
Confidence 3579999999999999999999998633 33345787777777777 7888999999999876543322 23333222
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
. ...+|+++.|+|++ ++..+-.-.++++. +|. |+++++|++|.....+..++ ...+-+..+-
T Consensus 78 l-~~~~D~ivnVvDAt-nLeRnLyltlQLlE--~g~----p~ilaLNm~D~A~~~Gi~ID----------~~~L~~~LGv 139 (653)
T COG0370 78 L-EGKPDLIVNVVDAT-NLERNLYLTLQLLE--LGI----PMILALNMIDEAKKRGIRID----------IEKLSKLLGV 139 (653)
T ss_pred h-cCCCCEEEEEcccc-hHHHHHHHHHHHHH--cCC----CeEEEeccHhhHHhcCCccc----------HHHHHHHhCC
Confidence 2 35789999999998 55444333333332 233 89999999998765222222 2222233333
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHHHcCCC---CCCHHHHHhHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ---PYTDELKRGAT 225 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~~~~~~~~ 225 (363)
... .+++..+.+++++++.+.+........ .|...+.+...
T Consensus 140 PVv------~tvA~~g~G~~~l~~~i~~~~~~~~~~~~~~y~~~ie~~i~ 183 (653)
T COG0370 140 PVV------PTVAKRGEGLEELKRAIIELAESKTTPREVDYGEEIEEEIK 183 (653)
T ss_pred CEE------EEEeecCCCHHHHHHHHHHhccccccccccccchHHHHHHH
Confidence 333 567778899999999988876543331 25554444333
No 36
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=8.2e-14 Score=118.87 Aligned_cols=155 Identities=21% Similarity=0.307 Sum_probs=105.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccc-----ccCCCCCceeeEeEEEEee-CC--cEEEEEeCCCCCCCCCChH---
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSE--- 87 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~-----~~~~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~--- 87 (363)
..+++++|.+|.|||||||+|++...... .......|+.......... ++ ..++++||||++|....+.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 36999999999999999999998854321 1111212333333333332 22 3678999999998543321
Q ss_pred ----HHHHHHHHHHh---------ccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcc
Q 017924 88 ----FVGKEIVKCLG---------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (363)
Q Consensus 88 ----~~~~~~~~~~~---------~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~ 153 (363)
.+..++..++. ..+.++|++||++... +.+..-+...++.+...+ |+|-|+.|.|.++.
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~v------NiIPVI~KaD~lT~- 173 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKV------NLIPVIAKADTLTK- 173 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccc------cccceeeccccCCH-
Confidence 23344444432 2234899999999865 568888877766665432 89999999999988
Q ss_pred hhhHHHHhccCCCchHHHHHHhcCCceEEecCC
Q 017924 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (363)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (363)
+.+..+... +...+.......+.|...
T Consensus 174 -~El~~~K~~-----I~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 174 -DELNQFKKR-----IRQDIEEHNIKVFDFPTD 200 (366)
T ss_pred -HHHHHHHHH-----HHHHHHHcCcceecCCCC
Confidence 888888777 777788877777777654
No 37
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=3.1e-14 Score=123.92 Aligned_cols=167 Identities=17% Similarity=0.124 Sum_probs=100.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCC-ceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.|+|||.+|||||||||+|++... .....+. |....+..+.+.++..++++|+||+.........+...+.+.
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~---~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrh--- 233 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKP---KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKH--- 233 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCC---ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHH---
Confidence 699999999999999999997643 1222222 444444444453567899999999875332222333344443
Q ss_pred cCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHH-HHhccCCCchHHHHHHhcC
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE-DFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~ 177 (363)
..+.+++++|+|+++.-+..+. .+...+......-...++++|+||+|+... .... .... ......+
T Consensus 234 -ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~--~~~~~~~~~--------~~~~~~~ 302 (335)
T PRK12299 234 -IERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE--EEEREKRAA--------LELAALG 302 (335)
T ss_pred -hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc--hhHHHHHHH--------HHHHhcC
Confidence 3467999999999833333333 333344333211122489999999998754 2221 1111 1122222
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
..+ ...|+..+.++.+|++.|...+..
T Consensus 303 ~~i------~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 303 GPV------FLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred CCE------EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 222 256788889999999988776643
No 38
>PRK09866 hypothetical protein; Provisional
Probab=99.64 E-value=6.4e-13 Score=120.86 Aligned_cols=121 Identities=12% Similarity=0.057 Sum_probs=75.7
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCC
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D 148 (363)
..++|+||||++.... ..+.+.+.. ....+|+++||+|+...++..+...++.+... ++. .|+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K~--~PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQS--VPLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CCC--CCEEEEEEccc
Confidence 4678999999986421 123333333 34578999999999856788888777777653 321 28999999999
Q ss_pred CCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 149 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.........+.+... +...+..... .|......|+..+.+++.|++.|..
T Consensus 301 l~dreeddkE~Lle~-----V~~~L~q~~i---~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 301 QQDRNSDDADQVRAL-----ISGTLMKGCI---TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCcccchHHHHHHH-----HHHHHHhcCC---CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 874311112222222 2222222111 2334456789999999999987665
No 39
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.64 E-value=5.3e-15 Score=120.05 Aligned_cols=164 Identities=21% Similarity=0.189 Sum_probs=97.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccC--------------CCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCCh
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS 86 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 86 (363)
+|+|+|..|+|||||+|+|++......... ....+.........+ .+..+.++||||..+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~---- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDF---- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHH----
Confidence 589999999999999999987754211100 112233333333344 4678889999996541
Q ss_pred HHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCC
Q 017924 87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP 166 (363)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~ 166 (363)
... .......+|++++|+|..+.........+..+.. . ..++++++||+|.... ..+......
T Consensus 76 ---~~~----~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-~----~~~i~iv~nK~D~~~~--~~~~~~~~~--- 138 (189)
T cd00881 76 ---SSE----VIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-G----GLPIIVAINKIDRVGE--EDLEEVLRE--- 138 (189)
T ss_pred ---HHH----HHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-C----CCCeEEEEECCCCcch--hcHHHHHHH---
Confidence 111 1222346799999999875555555555544433 1 2389999999999864 333333333
Q ss_pred chHHHHHHhcCCc--------eEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 167 KPLKEILQLCDNR--------CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 167 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+...+...+.. ..........|+..+.++.++++.+...+
T Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 139 --IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred --HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 33333322210 00112234668888889999988876654
No 40
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.64 E-value=5e-14 Score=128.16 Aligned_cols=158 Identities=22% Similarity=0.260 Sum_probs=98.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+.+|+|+|.+|+|||||+|.|+|..........+ .|.+.....+.+ ++..+.++||||+.+. ...+...-....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~g-tT~d~~~~~i~~-~g~~i~l~DT~G~~~~---~~~ie~~gi~~~ 288 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAG-TTRDVIEEHINL-DGIPLRLIDTAGIRET---DDEVEKIGIERS 288 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC-cccccEEEEEEE-CCeEEEEEeCCCCCCC---ccHHHHHHHHHH
Confidence 45799999999999999999999876411112222 233333334444 6788999999998652 221111111112
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
......+|++++|+|+++..+..+...+.. .. . .|+++|+||+|+... .... . ...
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~~-~--~piiiV~NK~DL~~~--~~~~----~-----------~~~ 344 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDDEILEE----LK-D--KPVIVVLNKADLTGE--IDLE----E-----------ENG 344 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHHHHHHh----cC-C--CCcEEEEEhhhcccc--chhh----h-----------ccC
Confidence 233457899999999985655554433332 11 1 389999999998644 1111 0 001
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.. ....|++.+.++.+|++.+...+..
T Consensus 345 ~~------~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 345 KP------VIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred Cc------eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 11 2256888889999999999887754
No 41
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.63 E-value=1.2e-14 Score=127.61 Aligned_cols=162 Identities=23% Similarity=0.189 Sum_probs=98.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|||.+|||||||+|+|+|...+... ....|.+.....+.+.++..+.++||+|+... .+. ...+.+...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~--~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~-l~~-~lie~f~~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAAD--QLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD-LPH-ELVAAFRATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeecc--CCccccCCEEEEEEeCCCceEEEEecCccccc-CCH-HHHHHHHHHH
Confidence 3479999999999999999999988642211 11223344444444535678999999998431 112 2223343332
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHH-HHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAV-HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
. ....+|++++|+|+++..+..+...+ ..+..+ +. ...|+++|+||+|+... ..+.. + ..
T Consensus 264 e-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~--~~v~~---------~---~~-- 324 (351)
T TIGR03156 264 E-EVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE--PRIER---------L---EE-- 324 (351)
T ss_pred H-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh--HhHHH---------H---Hh--
Confidence 2 34578999999999855544443332 333332 21 12389999999998743 22211 0 00
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
.. ......|++++.++.+|++.|...
T Consensus 325 ~~-----~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 325 GY-----PEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CC-----CCEEEEEccCCCCHHHHHHHHHhh
Confidence 00 012356888899999999887653
No 42
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.63 E-value=9.8e-15 Score=133.70 Aligned_cols=159 Identities=21% Similarity=0.256 Sum_probs=107.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|||++|+|||||+|.|+|........ ..++|.+.......+ ++..+.++||||+... ...+.+.+......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~-~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSD-TPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecC-CCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence 58999999999999999999876311112 223455555555666 7888999999998642 233445555555556
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCce
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 180 (363)
...+|++++|+|+...++..+....+.+... + .++++|+||+|.... ... ..++. ..+.
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-~----~piilVvNK~D~~~~--~~~-----------~~~~~-~lg~-- 134 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-G----KPVILVANKIDGKKE--DAV-----------AAEFY-SLGF-- 134 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-C----CCEEEEEECccCCcc--ccc-----------HHHHH-hcCC--
Confidence 6788999999999867888887777776653 3 389999999998754 210 11111 1111
Q ss_pred EEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
......|+..+.++.++++.+...+
T Consensus 135 ---~~~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 135 ---GEPIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred ---CCeEEEeCCcCCChHHHHHHHHHhc
Confidence 1123557777888888888877665
No 43
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.63 E-value=2.7e-14 Score=116.07 Aligned_cols=119 Identities=20% Similarity=0.214 Sum_probs=75.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhccccccccc-CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|.+|+|||||+|+|+|......+. ..+...+......+.......++++||||+.+...... ++.+.+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~----~~l~~~- 76 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPD----DYLEEM- 76 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHH----HHHHHh-
Confidence 589999999999999999999865321111 11111011111111111234688999999886543322 222222
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
.+.+.|+++++.+ .+++..+...++.+... +. ++++|+||+|...
T Consensus 77 -~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~~----~~ilV~nK~D~~~ 121 (197)
T cd04104 77 -KFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-GK----KFYFVRTKVDRDL 121 (197)
T ss_pred -CccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-CC----CEEEEEecccchh
Confidence 2446788888754 37888888888888764 43 7999999999864
No 44
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.63 E-value=2.6e-14 Score=124.35 Aligned_cols=165 Identities=18% Similarity=0.203 Sum_probs=98.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.|+|||.+|||||||+|+|++...- ....+ .|....+..+.+.+...++++||||+.........+...+.+.+
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~---va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi-- 233 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPK---IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI-- 233 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCcc---ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH--
Confidence 7999999999999999999976431 22222 24444455555523478999999998653222223344444433
Q ss_pred cCCCccEEEEEeecCCC---CCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 100 AKDGIHAFLVVFSVTNR---FSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~---~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.+++++++|+|+++. -...+. .+.+.+......-...++++|+||+|+... ..+++..+. +...
T Consensus 234 --erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~~--------l~~~ 301 (329)
T TIGR02729 234 --ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLKE--------LKKA 301 (329)
T ss_pred --HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHHH--------HHHH
Confidence 467999999998732 122222 233333332111123489999999998755 333333332 2222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..+ ...|+..+.++.++++.+...+
T Consensus 302 ~~~~v------i~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 302 LGKPV------FPISALTGEGLDELLYALAELL 328 (329)
T ss_pred cCCcE------EEEEccCCcCHHHHHHHHHHHh
Confidence 22222 2567788889999998877653
No 45
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.62 E-value=1.4e-14 Score=133.27 Aligned_cols=160 Identities=23% Similarity=0.217 Sum_probs=103.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|||.+|+|||||+|.|+|......... .++|.+.......+ ++..+.++||||+... ...+...+......
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~-~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~~~~ 113 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDV-PGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQAEV 113 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCC-CCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHHHHH
Confidence 5899999999999999999998754222222 23444444444455 6778999999997632 12233344444444
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
++..+|++++|+|+++..+..+..+...+... + .|+++|+||+|..... .... ..... +..
T Consensus 114 ~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-~----~piilV~NK~Dl~~~~-~~~~------------~~~~~-g~~ 174 (472)
T PRK03003 114 AMRTADAVLFVVDATVGATATDEAVARVLRRS-G----KPVILAANKVDDERGE-ADAA------------ALWSL-GLG 174 (472)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccCCccc-hhhH------------HHHhc-CCC
Confidence 55678999999999877777666666665532 2 3899999999986431 0111 11111 111
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+|+..+.++.+|++.+...+
T Consensus 175 -----~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 175 -----EPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred -----CeEEEEcCCCCCcHHHHHHHHhhc
Confidence 112568888899999988877655
No 46
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.62 E-value=8.9e-15 Score=124.09 Aligned_cols=153 Identities=23% Similarity=0.302 Sum_probs=88.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhccccccccc------CCCCCceeeEeEEEEee-CC--cEEEEEeCCCCCCCCCChHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASA------GSSGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSEFVG 90 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~------~~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~~~ 90 (363)
.+|+|+|.+|+|||||||+|++...+.... .....+........... ++ ..++++||||+++.... ....
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n-~~~~ 83 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDN-SDCW 83 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTH-CHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccc-hhhh
Confidence 689999999999999999999887644320 01111222222222221 22 36789999999875432 2222
Q ss_pred HHH--------HHHH---------hccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 91 KEI--------VKCL---------GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 91 ~~~--------~~~~---------~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+ ..++ .....++|++||+++.+ +++...+...++.+... + |+|-|+.|.|.++.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~----v--NvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR----V--NVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT----S--EEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc----c--cEEeEEecccccCH
Confidence 222 2222 12345789999999975 67888887766665543 2 89999999999987
Q ss_pred chhhHHHHhccCCCchHHHHHHhcCCceEEecCC
Q 017924 153 HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (363)
Q Consensus 153 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (363)
+.+..+... +...+...+...+.|...
T Consensus 158 --~el~~~k~~-----i~~~l~~~~I~~f~f~~~ 184 (281)
T PF00735_consen 158 --EELQAFKQR-----IREDLEENNIKIFDFPED 184 (281)
T ss_dssp --HHHHHHHHH-----HHHHHHHTT--S------
T ss_pred --HHHHHHHHH-----HHHHHHHcCceeeccccc
Confidence 888877776 777777777777666543
No 47
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.62 E-value=3.7e-14 Score=114.40 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=79.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccc--------------ccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (363)
..+|+++|+.|+|||||+++|++.....+ .....+.|.......+.+ ++..++++||||+.+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~--- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD--- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH---
Confidence 47899999999999999999985411000 011234454444444444 677889999999643
Q ss_pred ChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
+...+..+...+|++++|+|+.......+...+..+... +.. ++++++||+|+...
T Consensus 78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~~---~iIvviNK~D~~~~ 133 (195)
T cd01884 78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GVP---YIVVFLNKADMVDD 133 (195)
T ss_pred --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---cEEEEEeCCCCCCc
Confidence 333333444578999999999756777776776666543 321 47788999998743
No 48
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.62 E-value=1.7e-14 Score=117.16 Aligned_cols=168 Identities=18% Similarity=0.221 Sum_probs=96.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc---cccc--ccCCCCCceeeEeEEEEee-------------CCcEEEEEeCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK---AFKA--SAGSSGVTKTCEMKTTVLK-------------DGQVVNVIDTPGLFD 81 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~---~~~~--~~~~~~~t~~~~~~~~~~~-------------~~~~~~l~DtpG~~~ 81 (363)
.+|+|+|+.|+|||||++.|++.. .+.. .....+.|.........+. .+..++++||||...
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 379999999999999999998631 1100 0111223433333333331 256889999999632
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHh
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~ 161 (363)
+.+.+......+|++++|+|+...........+... ...+ .++++++||+|.... ...+..+
T Consensus 81 -----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~-~~~~----~~~iiv~NK~Dl~~~--~~~~~~~ 142 (192)
T cd01889 81 -----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIG-EILC----KKLIVVLNKIDLIPE--EERERKI 142 (192)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHH-HHcC----CCEEEEEECcccCCH--HHHHHHH
Confidence 222222333467999999998755544444433332 2223 289999999998754 3333333
Q ss_pred ccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.. ..+.+...+...+.. .......|+..+.++.+|++.+...+.
T Consensus 143 ~~-~~~~l~~~~~~~~~~---~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 143 EK-MKKKLQKTLEKTRFK---NSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HH-HHHHHHHHHHhcCcC---CCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 22 000122222111110 011236788899999999999887664
No 49
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.62 E-value=5.2e-14 Score=135.52 Aligned_cols=173 Identities=17% Similarity=0.169 Sum_probs=105.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH-
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC- 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~- 96 (363)
...+|+|+|.+|+|||||+|.|+|.......... +.|.+.....+.+ ++..+.++||||+......... .+.+...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~-gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~~~-~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLA-GTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKLTG-AEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCC-CCCcCcceeEEEE-CCCEEEEEECCCcccCcccchh-HHHHHHHH
Confidence 3479999999999999999999988641111222 2233333333444 6778889999998642211110 1111111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...+|++++|+|++...+..+...+..+... + .++++|+||||+... ...+.+... +...+...
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~-~----~piIiV~NK~DL~~~--~~~~~~~~~-----~~~~l~~~ 593 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKVMSMAVDA-G----RALVLVFNKWDLMDE--FRRQRLERL-----WKTEFDRV 593 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEEchhcCCh--hHHHHHHHH-----HHHhccCC
Confidence 12334678999999999877887777666554431 2 389999999998754 222211111 11111110
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.+......|++++.++.+|++.+......
T Consensus 594 -----~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 594 -----TWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred -----CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 11122356889999999999998887755
No 50
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.61 E-value=3.1e-14 Score=113.22 Aligned_cols=161 Identities=16% Similarity=0.137 Sum_probs=93.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+|+|+|..|+|||||+|+|++... .. ......|........... .+..++++||||... +.....
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~-~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~~ 68 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNV-AA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMRA 68 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccc-cc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHHH
Confidence 699999999999999999986643 11 112223333333334331 256889999999543 111122
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH-HhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~ 177 (363)
.....+|++++|+|+++.........+..+.. .+ .|+++|+||+|+.......+...+.. +.... ...+
T Consensus 69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~~----~p~ivv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~ 138 (168)
T cd01887 69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKA-AN----VPFIVALNKIDKPNANPERVKNELSE-----LGLQGEDEWG 138 (168)
T ss_pred HHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-cC----CCEEEEEEceecccccHHHHHHHHHH-----hhcccccccc
Confidence 23357899999999974444444444544433 22 38999999999874311122222211 11000 0111
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+ .....|+..+.++.++++.+....
T Consensus 139 ~~~----~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 139 GDV----QIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred CcC----cEEEeecccCCCHHHHHHHHHHhh
Confidence 111 123567788889999999887654
No 51
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.61 E-value=2.6e-14 Score=131.02 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=103.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|||.+|+|||||+|.|+|......... .++|.+.......+ ++..+.++||||+.+.. ..+...+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~-~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADT-PGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCC-CCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 4799999999999999999998764222222 23444445555555 67889999999987621 1233444444444
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
+...+|++++|+|+.+.++..+.....++... + .++++|+||+|..... ..+.+ +.. .+.
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-~----~piilv~NK~D~~~~~-~~~~~------------~~~-lg~- 136 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-N----KPVILVVNKVDGPDEE-ADAYE------------FYS-LGL- 136 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCccch-hhHHH------------HHh-cCC-
Confidence 55678999999999867777777666666653 3 3899999999965320 11111 111 111
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
......|+..+.++.++++.+..
T Consensus 137 ----~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 137 ----GEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred ----CCCEEEEeeCCCCHHHHHHHHHh
Confidence 11224577778888888877765
No 52
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.61 E-value=1.5e-14 Score=118.71 Aligned_cols=155 Identities=12% Similarity=0.094 Sum_probs=90.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccc-----------------------------cCCCCCceeeEeEEEEeeCCcEE
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTVLKDGQVV 71 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 71 (363)
+|+|+|+.|+|||||++.|++....... ....+.|.+.....+.+ ++..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 5899999999999999999754321110 00133444444445555 67889
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 72 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
+++||||..+ +...+..+...+|++++|+|++..........+..+.. ++. .++++|+||+|...
T Consensus 80 ~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~---~~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGI---RHVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCC---CcEEEEEEchhccc
Confidence 9999999532 21222223457899999999975555544444443332 332 25778899999875
Q ss_pred cchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHH
Q 017924 152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199 (363)
Q Consensus 152 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (363)
.....++..... ++.++...+.... .....|+..+.++.+
T Consensus 145 ~~~~~~~~i~~~-----~~~~~~~~~~~~~---~ii~iSA~~g~ni~~ 184 (208)
T cd04166 145 YSEEVFEEIVAD-----YLAFAAKLGIEDI---TFIPISALDGDNVVS 184 (208)
T ss_pred CCHHHHHHHHHH-----HHHHHHHcCCCCc---eEEEEeCCCCCCCcc
Confidence 322333334444 5555555443210 112456666656553
No 53
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.61 E-value=4.1e-14 Score=112.12 Aligned_cols=157 Identities=16% Similarity=0.181 Sum_probs=91.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+.+... .. ....+...+.....+.+ ++ ..+.++||||... +....
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~~~ 69 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTF-SE-RQGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQER-----------FRTIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-cc-cCCCccceEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 6999999999999999999975432 11 11112222233333444 33 3678999999422 22223
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...|++++++|+++.-+-.. ..++..+....... .|+++|.||+|+........++ ...+....
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 138 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASN--VVLLLIGNKCDLEEQREVLFEE---------ACTLAEKN 138 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHHH---------HHHHHHHc
Confidence 334457899999999983333222 33444444432222 3799999999986441111111 22233332
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
+...+ ...|++.+.++.+++..+.+
T Consensus 139 ~~~~~-----~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 139 GMLAV-----LETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred CCcEE-----EEEECCCCCCHHHHHHHHHH
Confidence 22122 25678888899998887654
No 54
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.61 E-value=8.4e-14 Score=110.76 Aligned_cols=163 Identities=21% Similarity=0.261 Sum_probs=93.0
Q ss_pred EEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCCh---HHHHHHHHHHHh
Q 017924 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS---EFVGKEIVKCLG 98 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~---~~~~~~~~~~~~ 98 (363)
|+|+|.+|||||||+|.|++..... ...+..........+.. ...++++||||+....... ......+..++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~--~~~~~~~~t~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~- 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLA--RTSKTPGKTQLINFFNV--NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL- 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcee--eecCCCCcceeEEEEEc--cCeEEEecCCCccccccCHHHHHHHHHHHHHHH-
Confidence 7999999999999999999433211 11122111122222222 3378899999987753321 11111122222
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH-hc-
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ-LC- 176 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~-~~- 176 (363)
.....++.++++++.+..........++++... + .++++++||+|.... ......... +...+. ..
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~~--~~~~~~~~~-----~~~~l~~~~~ 144 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLKK--SELAKALKE-----IKKELKLFEI 144 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCCh--HHHHHHHHH-----HHHHHHhccC
Confidence 233456888889888745555555555555442 2 389999999998755 333333322 333332 11
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
...++ ..|+.++.++.++++.|.+.
T Consensus 145 ~~~~~------~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 145 DPPII------LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCceE------EEecCCCCCHHHHHHHHHHh
Confidence 12222 45666778888888877654
No 55
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.61 E-value=2.3e-14 Score=114.47 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=89.7
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
......+|+|+|.+|+|||||++.|++..... ...|....+..+.+ ++..+.++||||... +.
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-----~~~t~g~~~~~~~~-~~~~l~l~D~~G~~~-----------~~ 72 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDIDT-----ISPTLGFQIKTLEY-EGYKLNIWDVGGQKT-----------LR 72 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEEEEE-CCEEEEEEECCCCHH-----------HH
Confidence 34456899999999999999999999774311 11122222233334 567789999999543 12
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHH-hccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNL-FGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
......+...|++++|+|.+..-+-.+ ...+..+... ... ..++++|.||+|+... ...++ +...
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~--~~~~~---------~~~~ 139 (173)
T cd04154 73 PYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLA--GATLLILANKQDLPGA--LSEEE---------IREA 139 (173)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECcccccC--CCHHH---------HHHH
Confidence 222233467899999999873322111 1222222111 111 2389999999998643 21111 1111
Q ss_pred HHhc---CCceEEecCCCcccccchhHHHHHHHHH
Q 017924 173 LQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLV 204 (363)
Q Consensus 173 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~l 204 (363)
+... ..... ....|+..+.++.++++.+
T Consensus 140 ~~~~~~~~~~~~----~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 140 LELDKISSHHWR----IQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred hCccccCCCceE----EEeccCCCCcCHHHHHHHH
Confidence 1110 11111 2366888899999988865
No 56
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.61 E-value=1.3e-14 Score=118.82 Aligned_cols=194 Identities=18% Similarity=0.172 Sum_probs=121.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH-HHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~ 97 (363)
.++|+|||.+|+|||||.|.+.|+.. +..+....|+++.+-.+...+...+.|+||||+........ -....+....
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv--~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKV--SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCcc--ccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 37999999999999999999999988 44677778888888887776788999999999876432211 1111122222
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHH--HhccC-CCchHHHHHH
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED--FLGHE-CPKPLKEILQ 174 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~--~~~~~-~~~~~~~~~~ 174 (363)
..+...+|++++++|+++.-..-.-+.|..+.....- +.++|.||+|.....+..++- .+.+. ......++-+
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~i----ps~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKI----PSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcC----CceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 3444578999999998733333344556666665433 789999999987653222221 11110 0000001111
Q ss_pred hcCCc-----------eEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCC-CCHHH
Q 017924 175 LCDNR-----------CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQP-YTDEL 220 (363)
Q Consensus 175 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~ 220 (363)
.+... .--|..++..|+..++++.+|.++|...... +.+ |..++
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~--gpW~y~a~i 281 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP--GPWKYPADI 281 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC--CCCCCCccc
Confidence 11110 1114455677899999999999998776644 333 55544
No 57
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.60 E-value=1.4e-14 Score=115.06 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=87.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccc--cCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKAS--AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+|+|+|..|+|||||++.|++......+ ......|+......+.+ ++..+.++||||... +.....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES-----------LRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 5899999999999999999864321000 11111233333334444 677889999999654 111222
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCc-chhhHHHHhccCCCchHHHHHHh
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~-~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
..+.+++++++|+|.+..-+. ......+..++.. ....|+++++||+|.... ....+..++.. ....
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~--------~~~~ 138 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERF--EESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQD--------KAEE 138 (167)
T ss_pred HHhCCCCEEEEEEECchHHHH--HHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhcc--------cccc
Confidence 334678999999998622111 1111222222211 112389999999998654 01122222222 1111
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
.+.... .....|++.+.++.++++.|.
T Consensus 139 ~~~~~~---~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 139 IGRRDC---LVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred ccCCce---EEEEeeCCCCcCHHHHHHHHh
Confidence 111110 123568888999999988764
No 58
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=7.8e-14 Score=125.98 Aligned_cols=167 Identities=16% Similarity=0.128 Sum_probs=99.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce-eeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..|+|||.+|||||||||.|++...- ....+.|+ ...+..+.+ .+..++|+||||+.........+...+.+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk---IadypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLr--- 232 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK---IADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLR--- 232 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc---ccccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHH---
Confidence 47999999999999999999976431 22223333 334444444 66789999999986532222223333433
Q ss_pred ccCCCccEEEEEeecCCC----CCHHHHH-HHHHHHHHhc---------cccccceEEEEeCCCCCCcchhhHHHHhccC
Q 017924 99 MAKDGIHAFLVVFSVTNR----FSQEEET-AVHRLPNLFG---------KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE 164 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~----~~~~~~~-~l~~~~~~~~---------~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~ 164 (363)
...+++++++|+|++.. -...+.. +...+..+.. .-..+|++||+||+|+... ..+.+.+.
T Consensus 233 -hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~el~e~l~-- 307 (500)
T PRK12296 233 -HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RELAEFVR-- 307 (500)
T ss_pred -HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HHHHHHHH--
Confidence 33567999999998621 1112222 2223322211 1122489999999998644 33322222
Q ss_pred CCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
..+...+..+ ...|+..+.++.+|+..|...+..
T Consensus 308 ------~~l~~~g~~V------f~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 308 ------PELEARGWPV------FEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred ------HHHHHcCCeE------EEEECCCCCCHHHHHHHHHHHHHh
Confidence 1222222222 356778889999999998888765
No 59
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=5.6e-13 Score=107.66 Aligned_cols=135 Identities=20% Similarity=0.314 Sum_probs=81.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEee-C--CcEEEEEeCCCCCCCCCChH-------H
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLK-D--GQVVNVIDTPGLFDLSAGSE-------F 88 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~-~--~~~~~l~DtpG~~~~~~~~~-------~ 88 (363)
.+|+.||.+|.||||||++|++.. |.+.+++.. .++..+...+... . ...++++||.|++|....++ -
T Consensus 43 FNilCvGETg~GKsTLmdtLFNt~-f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 43 FNILCVGETGLGKSTLMDTLFNTK-FESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred EEEEEeccCCccHHHHHHHHhccc-cCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 589999999999999999999654 444343322 1222222222111 1 23678999999998532111 1
Q ss_pred HHHHHHHHH-----------hccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhh
Q 017924 89 VGKEIVKCL-----------GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT 156 (363)
Q Consensus 89 ~~~~~~~~~-----------~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~ 156 (363)
+..++..++ .....++|+++|++..+ |.+..-+.-.++.+.. .+ ++|-|+.|.|-++. ..
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds----kV--NIIPvIAKaDtisK--~e 193 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS----KV--NIIPVIAKADTISK--EE 193 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh----hh--hhHHHHHHhhhhhH--HH
Confidence 222332222 23346889999999876 5555555444444433 22 78888999998876 66
Q ss_pred HHHHhcc
Q 017924 157 LEDFLGH 163 (363)
Q Consensus 157 l~~~~~~ 163 (363)
|..+...
T Consensus 194 L~~FK~k 200 (406)
T KOG3859|consen 194 LKRFKIK 200 (406)
T ss_pred HHHHHHH
Confidence 6655544
No 60
>PRK04213 GTP-binding protein; Provisional
Probab=99.59 E-value=8.1e-14 Score=114.17 Aligned_cols=168 Identities=19% Similarity=0.205 Sum_probs=92.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH--
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK-- 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-- 95 (363)
...+|+|+|.+|+|||||+|+|+|... ...... ++|... ..+.+ . .+.++||||++..........+.+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~-~~t~~~--~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRP-GVTRKP--NHYDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCC-ceeeCc--eEEee-c--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 457999999999999999999998753 222222 222222 12222 2 57899999976543222222222222
Q ss_pred --HHhccCCCccEEEEEeecCCCCC-----------HHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc
Q 017924 96 --CLGMAKDGIHAFLVVFSVTNRFS-----------QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 96 --~~~~~~~~~~~~l~v~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~ 162 (363)
++......++++++|+|.+.... ..+...+..+.. .+ .|+++|+||+|+... . .+...
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~----~p~iiv~NK~Dl~~~--~--~~~~~ 151 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-LG----IPPIVAVNKMDKIKN--R--DEVLD 151 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-cC----CCeEEEEECccccCc--H--HHHHH
Confidence 22223346788999998752111 112222333222 12 389999999998654 2 11111
Q ss_pred cCCCchHHHHHHhcCC--ceEEe-cCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 163 HECPKPLKEILQLCDN--RCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 163 ~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
. +....+. .+..+ .....+|+..+ ++.++++.|...+..
T Consensus 152 ~--------~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 152 E--------IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred H--------HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 1 1111121 11000 11246788899 999999988776543
No 61
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.58 E-value=1.2e-14 Score=108.40 Aligned_cols=141 Identities=20% Similarity=0.250 Sum_probs=86.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.||+|||+.|||||||+++|.|... ....+.. +.+.. .+|||||-+-. ...+...+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~----~~~KTq~----i~~~~-------~~IDTPGEyiE-------~~~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI----RYKKTQA----IEYYD-------NTIDTPGEYIE-------NPRFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC----CcCccce----eEecc-------cEEECChhhee-------CHHHHHHHHH
Confidence 4899999999999999999998765 2222211 11111 26999996542 1233444444
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
....+|+++++.|++...+.---. +...|. +|+|-|+||+|+...+ ..++ . ...++...+..
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~----fa~~f~----~pvIGVITK~Dl~~~~-~~i~----~-----a~~~L~~aG~~ 121 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPG----FASMFN----KPVIGVITKIDLPSDD-ANIE----R-----AKKWLKNAGVK 121 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCch----hhcccC----CCEEEEEECccCccch-hhHH----H-----HHHHHHHcCCC
Confidence 445789999999987332211111 112233 2899999999998331 2222 2 23344444444
Q ss_pred eEEecCCCcccccchhHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
.. ...|+.++.++.+|.+.|.
T Consensus 122 ~i-----f~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 122 EI-----FEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred Ce-----EEEECCCCcCHHHHHHHHh
Confidence 33 2557778899999999875
No 62
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.58 E-value=7.4e-14 Score=109.81 Aligned_cols=155 Identities=19% Similarity=0.269 Sum_probs=91.6
Q ss_pred EEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCC
Q 017924 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG 103 (363)
Q Consensus 24 lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (363)
|+|.+|+|||||+|.|+|.... .... .+.|.......+.+ ++..+.++||||+.+...... ...+....... .+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~-~~~~-~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK-VGNW-PGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc-ccCC-CCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence 5899999999999999987532 2122 23344444444555 567889999999876432211 11222222222 57
Q ss_pred ccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEe
Q 017924 104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF 183 (363)
Q Consensus 104 ~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (363)
.|++++|+|+. .... ....+..+.. .+ .++++|+||+|.... ..+..... .+....+..+
T Consensus 75 ~d~vi~v~d~~-~~~~-~~~~~~~~~~-~~----~~~iiv~NK~Dl~~~--~~~~~~~~--------~~~~~~~~~~--- 134 (158)
T cd01879 75 PDLIVNVVDAT-NLER-NLYLTLQLLE-LG----LPVVVALNMIDEAEK--RGIKIDLD--------KLSELLGVPV--- 134 (158)
T ss_pred CcEEEEEeeCC-cchh-HHHHHHHHHH-cC----CCEEEEEehhhhccc--ccchhhHH--------HHHHhhCCCe---
Confidence 89999999987 3222 2222323322 12 389999999998754 22221111 1222222222
Q ss_pred cCCCcccccchhHHHHHHHHHHHH
Q 017924 184 DNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 184 ~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
...|+..+.++.++++.+...
T Consensus 135 ---~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 135 ---VPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred ---EEEEccCCCCHHHHHHHHHHH
Confidence 256777788899988877665
No 63
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.58 E-value=1.3e-13 Score=111.97 Aligned_cols=170 Identities=16% Similarity=0.118 Sum_probs=93.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|.+|+|||||++.+++... ... ...+.+.......+.+ ++ ..+.++||+|....... ...+.....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f-~~~-~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~---~~~e~~~~~ 74 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEF-PEE-YIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGT---AGQEWMDPR 74 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCC-Ccc-cCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCcc---chhHHHHHH
Confidence 3799999999999999999986543 211 1111111111122333 44 46779999997643211 112222222
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhc-cccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~-~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...+..+|++++|+|+++..+-.. ..++..+..... .....|+++|.||+|+... ...... .+..+...
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~--~~~~~~-------~~~~~~~~ 145 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH--RFAPRH-------VLSVLVRK 145 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc--ccccHH-------HHHHHHHH
Confidence 233467899999999974333222 223333443321 1122389999999998643 111000 01222211
Q ss_pred -cCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 -CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.+..+ ..+|++.+.++.++++.+...+-.
T Consensus 146 ~~~~~~------~e~Sak~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 146 SWKCGY------LECSAKYNWHILLLFKELLISATT 175 (198)
T ss_pred hcCCcE------EEecCCCCCCHHHHHHHHHHHhhc
Confidence 11122 267888899999999887766544
No 64
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.58 E-value=6e-14 Score=110.82 Aligned_cols=160 Identities=15% Similarity=0.124 Sum_probs=89.5
Q ss_pred EEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccC
Q 017924 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (363)
|+|+|..|+|||||++.+++... ... ...|.......+.. .+..+.++||+|.... .......+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~~~---~~pt~g~~~~~i~~-~~~~l~i~Dt~G~~~~-----------~~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-LES---VVPTTGFNSVAIPT-QDAIMELLEIGGSQNL-----------RKYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-ccc---ccccCCcceEEEee-CCeEEEEEECCCCcch-----------hHHHHHHH
Confidence 78999999999999999986642 111 11121111122223 4667889999996542 11222334
Q ss_pred CCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceE
Q 017924 102 DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV 181 (363)
Q Consensus 102 ~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 181 (363)
.++|++++|+|.++..+-... ..++..+.......|+++|.||.|+... ....+.... . .+..+....+..++
T Consensus 66 ~~ad~ii~V~D~t~~~s~~~~--~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-~--~~~~~~~~~~~~~~ 138 (164)
T cd04162 66 SGSQGLIFVVDSADSERLPLA--RQELHQLLQHPPDLPLVVLANKQDLPAA--RSVQEIHKE-L--ELEPIARGRRWILQ 138 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHH--HHHHHHHHhCCCCCcEEEEEeCcCCcCC--CCHHHHHHH-h--CChhhcCCCceEEE
Confidence 578999999998733321111 1222222211122489999999998654 333322211 0 02223222233333
Q ss_pred EecCCCcccccchhHHHHHHHHH
Q 017924 182 LFDNKTKDEAKGTEQVRQLLSLV 204 (363)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~l 204 (363)
..+.....|+..+.++.++++.+
T Consensus 139 ~~Sa~~~~s~~~~~~v~~~~~~~ 161 (164)
T cd04162 139 GTSLDDDGSPSRMEAVKDLLSQL 161 (164)
T ss_pred EeeecCCCChhHHHHHHHHHHHH
Confidence 33455666777788998888765
No 65
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.58 E-value=9.6e-14 Score=109.61 Aligned_cols=154 Identities=19% Similarity=0.174 Sum_probs=86.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|.+|+|||||++.+++... .. ....|.... ...... ++ ..+.++||+|.... ..+.
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~--------~~l~-- 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF-VD---EYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEY--------SAMR-- 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-cC---CcCCcchheEEEEEEE-CCEEEEEEEEECCCCcch--------HHHH--
Confidence 5899999999999999999996643 11 111122111 122223 33 34678999995431 1122
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...+...+++++|++.++.-+-.+. .++..+..... ....|+++|.||+|.... ...... ...+...
T Consensus 67 -~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~--~~~~~~--------~~~~~~~ 134 (162)
T cd04138 67 -DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAAR--TVSSRQ--------GQDLAKS 134 (162)
T ss_pred -HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--eecHHH--------HHHHHHH
Confidence 2233467999999998733222222 23333433321 112389999999998653 211111 1122222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.+..++ ..|+..+.++.++++.+.+
T Consensus 135 ~~~~~~------~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 135 YGIPYI------ETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred hCCeEE------EecCCCCCCHHHHHHHHHH
Confidence 222222 5678888999999887654
No 66
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.58 E-value=6.8e-13 Score=120.03 Aligned_cols=123 Identities=16% Similarity=0.196 Sum_probs=78.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCC-ceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.++.+|+|+|.+|+|||||+|.|++..... .+..+. |.+.....+.+ ++..+.++||||+.+.. ..+...-..
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai--vs~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~---~~ie~~gi~ 274 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAI--VSDIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHA---DFVERLGIE 274 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcc--cCCCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccch---hHHHHHHHH
Confidence 355799999999999999999999875311 222222 33333344455 78888999999986532 111111111
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
.....+..+|++++|+|+++..+..+. ++..+.. .. .|+++|+||+|+..
T Consensus 275 ~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~---~~--~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 275 KSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK---SK--KPFILVLNKIDLKI 324 (442)
T ss_pred HHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh---CC--CCEEEEEECccCCC
Confidence 122344678999999999866655443 3333221 12 38999999999853
No 67
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.58 E-value=3.6e-14 Score=113.72 Aligned_cols=161 Identities=19% Similarity=0.136 Sum_probs=88.5
Q ss_pred EEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCC
Q 017924 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD 102 (363)
Q Consensus 24 lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (363)
|+|++|||||||+|+|+|.... .... ...|.......+.+ + +..+.++||||+.........+...+.. ...
T Consensus 1 iiG~~~~GKStll~~l~~~~~~-~~~~-~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~----~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK-VANY-PFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFLA----HIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc-ccCC-CceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHHH----HHh
Confidence 5899999999999999987531 1111 12233333333444 5 7888999999985422111111222222 234
Q ss_pred CccEEEEEeecCCCC------CHHHH-HHHHHHHHHhcc-----ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHH
Q 017924 103 GIHAFLVVFSVTNRF------SQEEE-TAVHRLPNLFGK-----NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (363)
Q Consensus 103 ~~~~~l~v~~~~~~~------~~~~~-~~l~~~~~~~~~-----~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~ 170 (363)
+++++++|+|+.+.. ...+. .....+...... ....|+++|+||+|+... ..+..+...
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~------- 144 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--EELEEELVR------- 144 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--hHHHHHHHH-------
Confidence 679999999987332 22222 222222221110 012489999999999765 333322100
Q ss_pred HHHHhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.........+ ...|+..+.++.++++.+..
T Consensus 145 ~~~~~~~~~~------~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 145 ELALEEGAEV------VPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred HHhcCCCCCE------EEEehhhhcCHHHHHHHHHh
Confidence 0111111222 24577778888888887643
No 68
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=1.2e-13 Score=123.24 Aligned_cols=164 Identities=19% Similarity=0.165 Sum_probs=99.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.|+|||.+|||||||||+|++...- ....+ .|....+..+.+.++..++++|+||+.........+...+.+.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k---Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrh--- 233 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK---IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRH--- 233 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc---cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHH---
Confidence 8999999999999999999976531 12222 2444444445553377899999999865222222233344333
Q ss_pred cCCCccEEEEEeecCCC---CCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 100 AKDGIHAFLVVFSVTNR---FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~---~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
..+++++++|+|+++. -...+ ..+...+......-...|.+||+||+|+... ...++. +...
T Consensus 234 -ier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-~e~l~~------------l~~~ 299 (424)
T PRK12297 234 -IERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-EENLEE------------FKEK 299 (424)
T ss_pred -HhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-HHHHHH------------HHHH
Confidence 3467999999998622 12222 2333444443211123489999999997422 111111 2222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.+..+ ...|+.++.++.+|++.+...+..
T Consensus 300 l~~~i------~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 300 LGPKV------FPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred hCCcE------EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 22122 255788889999999999887765
No 69
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=8.2e-14 Score=115.86 Aligned_cols=129 Identities=22% Similarity=0.272 Sum_probs=87.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH-HHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~ 97 (363)
..+|+|.|.+|+|||||++.|++... ...+.+.|+..-...+...++..+.++||||+.|-..... .+..+-..++
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~Akp---EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKP---EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCC---ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 36999999999999999999998764 2445555654433333222677899999999998543321 2222222222
Q ss_pred hccCCCccEEEEEeecC--CCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHH
Q 017924 98 GMAKDGIHAFLVVFSVT--NRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~--~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~ 159 (363)
. .-.++++|++|.+ +.++.++ ...++.++..|.. ++++|+||.|.... +.+++
T Consensus 245 ~---hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~----p~v~V~nK~D~~~~--e~~~~ 300 (346)
T COG1084 245 R---HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKA----PIVVVINKIDIADE--EKLEE 300 (346)
T ss_pred H---HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCC----CeEEEEecccccch--hHHHH
Confidence 1 2348899999987 5566544 4577788888773 89999999998865 44443
No 70
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.58 E-value=5.2e-13 Score=128.09 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=102.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCCh--HHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~~~~~~ 96 (363)
..+|+++|.+|||||||+|.|+|.... .+.. .++|++.....+.+ ++..++++||||..+..... ....+.+.+.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-vgn~-pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR-VGNW-AGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-cCCC-CCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHH
Confidence 368999999999999999999998652 2222 33455544444444 67789999999987643211 1122233222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
. .....+|++++|+|++ .+... ......+.+. + .|+++++||+|.... ...... +..+.+..
T Consensus 80 ~-l~~~~aD~vI~VvDat-~ler~-l~l~~ql~e~-g----iPvIvVlNK~Dl~~~--~~i~id--------~~~L~~~L 141 (772)
T PRK09554 80 Y-ILSGDADLLINVVDAS-NLERN-LYLTLQLLEL-G----IPCIVALNMLDIAEK--QNIRID--------IDALSARL 141 (772)
T ss_pred H-HhccCCCEEEEEecCC-cchhh-HHHHHHHHHc-C----CCEEEEEEchhhhhc--cCcHHH--------HHHHHHHh
Confidence 2 2235789999999987 43322 2233333332 2 389999999998744 222222 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+...+ ..++..+.+++++.+.+.....
T Consensus 142 G~pVv------piSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 142 GCPVI------PLVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred CCCEE------EEEeecCCCHHHHHHHHHHhhh
Confidence 43332 5677788899999999887654
No 71
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.58 E-value=4.4e-14 Score=112.89 Aligned_cols=158 Identities=18% Similarity=0.122 Sum_probs=89.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+..+|+|+|++|||||||++.|.|.......+ |....+..+.+ ++..+.++|++|... +...+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~-----t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~~~~ 75 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITP-----TQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IRPYW 75 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCC-----CCCcceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 35899999999999999999999864311111 11112223334 567888999999532 22222
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..++++++|+|+.+..+-.. ...+..+..... ....|+++++||+|.... ...+++... ++ +. ..
T Consensus 76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~--~~~~~i~~~-----l~-~~-~~ 145 (173)
T cd04155 76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLATA--APAEEIAEA-----LN-LH-DL 145 (173)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCccC--CCHHHHHHH-----cC-Cc-cc
Confidence 233457799999999872211111 112222211110 112389999999998654 333333222 11 00 01
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
..+... ....|+.++.++.++++.|.
T Consensus 146 ~~~~~~---~~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 146 RDRTWH---IQACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred CCCeEE---EEEeECCCCCCHHHHHHHHh
Confidence 111111 12568888999999988764
No 72
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.57 E-value=1.8e-13 Score=111.16 Aligned_cols=157 Identities=16% Similarity=0.184 Sum_probs=90.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.|+|+|..|+|||||++.++... |... ...+.........+.+ ++ ..+.++||+|... +.....
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~-f~~~-~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~-----------~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT-FCEA-CKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQER-----------FNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC-CCCc-CCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHHHH
Confidence 58999999999999999998543 3221 1111122222223333 43 5678999999543 222333
Q ss_pred ccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+.++|++++|+|++++-+-... .++..+......+ .++++|.||.|+... ..+.... ...+.....
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~--~piilVgNK~DL~~~--~~v~~~~-------~~~~a~~~~ 136 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETD--REISRQQ-------GEKFAQQIT 136 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccc--cccCHHH-------HHHHHHhcC
Confidence 455688999999999844443332 2344444333323 389999999998643 1111000 111222211
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
+..+ ..+|++.+.++.+++..+...
T Consensus 137 ~~~~-----~etSAktg~gV~e~F~~l~~~ 161 (202)
T cd04120 137 GMRF-----CEASAKDNFNVDEIFLKLVDD 161 (202)
T ss_pred CCEE-----EEecCCCCCCHHHHHHHHHHH
Confidence 1112 256888899999998876543
No 73
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.57 E-value=3e-14 Score=112.03 Aligned_cols=155 Identities=16% Similarity=0.159 Sum_probs=85.4
Q ss_pred EEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccC
Q 017924 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (363)
|+|+|++|||||||+|.|+|... .. ....|+......... ++..+.++|+||... +.......+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-~~---~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-SE---DTIPTVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-Cc---CccCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence 78999999999999999998753 11 111222222223333 456788999999533 222222334
Q ss_pred CCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 102 DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 102 ~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
...|++++|+|++ ....-. .....+...... ....|+++|+||.|.... ....+.... +. +.......
T Consensus 66 ~~~d~ii~v~d~~-~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~--~~~~~~~~~-----~~-~~~~~~~~ 135 (159)
T cd04159 66 RGVNAIVYVVDAA-DRTALE-AAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA--LSVDELIEQ-----MN-LKSITDRE 135 (159)
T ss_pred hcCCEEEEEEECC-CHHHHH-HHHHHHHHHHcChhhcCCCEEEEEeCccccCC--cCHHHHHHH-----hC-cccccCCc
Confidence 5789999999987 221111 111222222111 012389999999998754 333222221 10 00000111
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.. ....|++.+.++.++++.+..
T Consensus 136 ~~----~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 136 VS----CYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred eE----EEEEEeccCCChHHHHHHHhh
Confidence 11 124577788899998887653
No 74
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.57 E-value=5.3e-14 Score=111.54 Aligned_cols=155 Identities=16% Similarity=0.166 Sum_probs=88.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|..|+|||||++.|..... .. . ..|+...+..+.. ....+.++||+|... +.....
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~-~~-~---~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 71 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQS-VT-T---IPTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLWR 71 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCC-cc-c---cCCcccceEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence 47999999999999999999975432 11 1 1122222222333 567889999999542 222223
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccc--cccceEEEEeCCCCCCc-chhhHHHHhccCCCchHHHHHHh
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~-~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
..+.++|++++|+|+++..+-.+ ....+...+... ...|++||.||+|+... ....+.+++.. ...
T Consensus 72 ~~~~~a~~ii~v~D~t~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~---------~~~ 140 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRIDE--ARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGL---------TRI 140 (168)
T ss_pred HHhccCCEEEEEEeCCchhhHHH--HHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCC---------Ccc
Confidence 34567899999999874322211 122222222111 11389999999998643 11222222211 000
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
....+.. ..+|++++.++.++++.|.
T Consensus 141 ~~~~~~~----~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 141 RDRNWYV----QPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CCCcEEE----EEeeCCCCCChHHHHHHHh
Confidence 0111122 2568889999999998764
No 75
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.57 E-value=1.3e-13 Score=108.59 Aligned_cols=154 Identities=18% Similarity=0.083 Sum_probs=89.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE--EEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK--TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.+++... ... ...+....++ ..... ....+.++||+|... +...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~ 65 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGY-EPQ---QLSTYALTLYKHNAKFEGKTILVDFWDTAGQER-----------FQTM 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCC---cCCceeeEEEEEEEEECCEEEEEEEEeCCCchh-----------hhhh
Confidence 4799999999999999999885532 211 1112222221 12221 134677999999543 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...|++++|+|.++..+-.+ ..++..+..... + .|+++|.||+|+... . ... ...+...
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~p~ivv~nK~Dl~~~--~--~~~--------~~~~~~~ 130 (161)
T cd04124 66 HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-E--IPCIVVANKIDLDPS--V--TQK--------KFNFAEK 130 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEECccCchh--H--HHH--------HHHHHHH
Confidence 3334567899999999874433222 234444444322 2 389999999997422 1 111 1112222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.+..++ ..|+..+.++.++++.+...+.
T Consensus 131 ~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 131 HNLPLY------YVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred cCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 222222 4678888999999988776543
No 76
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.57 E-value=2.9e-13 Score=108.86 Aligned_cols=160 Identities=13% Similarity=0.124 Sum_probs=97.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||+..+.+.. |.. ....+.+.......+.. ++ ..+.++||+|... +....
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~-~~~-~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~l~ 72 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGS-TES-PYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGR-----------FCTIF 72 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCC-CCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHHH
Confidence 799999999999999999998543 221 11111222222222333 33 4677999999543 22223
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+.++|++++|+|++++.+-.. ..++..+..... . .+++||.||.|+........+ . ...+....
T Consensus 73 ~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~--~piilVGNK~DL~~~~~v~~~-~--------~~~~a~~~ 140 (189)
T cd04121 73 RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-G--VPKILVGNRLHLAFKRQVATE-Q--------AQAYAERN 140 (189)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccchhccCCCHH-H--------HHHHHHHc
Confidence 334568899999999985544333 335555544332 3 389999999998642001111 1 22333333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
+..++ ..|++.+.+++++++.+...+...
T Consensus 141 ~~~~~------e~SAk~g~~V~~~F~~l~~~i~~~ 169 (189)
T cd04121 141 GMTFF------EVSPLCNFNITESFTELARIVLMR 169 (189)
T ss_pred CCEEE------EecCCCCCCHHHHHHHHHHHHHHh
Confidence 33333 568888999999999888766543
No 77
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.57 E-value=1.8e-13 Score=107.98 Aligned_cols=155 Identities=17% Similarity=0.161 Sum_probs=88.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+|+|+|..|+|||||++.|++..... ....+.+.+.....+.+ ++ ..+.++||||... +...+.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN--QYQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc--cCCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 79999999999999999999775411 11112222222222333 33 3578999999432 122222
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
......|++++|+|.++.-+-.. ..++..+....+.+ .++++++||+|.........+ . ........+
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~~~~~~~~~-~--------~~~~~~~~~ 136 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGND--VIIVLVGNKTDLSDKRQVSTE-E--------GEKKAKELN 136 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CEEEEEEEChhccccCccCHH-H--------HHHHHHHhC
Confidence 33457899999999873322222 23344443333322 389999999998533111111 1 111222222
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
..++ ..|+..+.++.+++..+..
T Consensus 137 ~~~~------~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 137 AMFI------ETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred CEEE------EEeCCCCCCHHHHHHHHHH
Confidence 2222 4577788899999887754
No 78
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.57 E-value=6.6e-14 Score=111.26 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=90.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|..|+|||||++.+++... . . ...|+...+..+.. ++..+.++||||.... ...+...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~-~---~-~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~-----------~~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF-M---Q-PIPTIGFNVETVEY-KNLKFTIWDVGGKHKL-----------RPLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-C---C-cCCcCceeEEEEEE-CCEEEEEEECCCChhc-----------chHHHHH
Confidence 589999999999999999987632 1 1 11233233333444 5678899999996542 1112223
Q ss_pred CCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC-
Q 017924 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN- 178 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~- 178 (363)
+.+.|++++|+|.++.-+-.+ ...+..+..... ....++++|.||.|+... ...++.... + .....+..
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~-~~~~~~~~~ 134 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVAGA--LSVEEMTEL-----L-SLHKLCCGR 134 (169)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCcccC--CCHHHHHHH-----h-CCccccCCC
Confidence 457899999999873322111 222222221111 011389999999998643 222221111 0 00011111
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
...+ ..+|++.+.++.++++.|.+.+..
T Consensus 135 ~~~~----~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 135 SWYI----QGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred cEEE----EeCcCCCCCCHHHHHHHHHHHHhh
Confidence 1122 256888999999999988765543
No 79
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.56 E-value=1.3e-13 Score=129.35 Aligned_cols=164 Identities=17% Similarity=0.199 Sum_probs=108.5
Q ss_pred EEEEEcCCCCchHHHHHHhhccccccc-ccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.|+++|+.++|||||+++|+|...-.. .....+.|+...+..+...++..+.|+||||.. .+.+.+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-----------~fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-----------KFLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-----------HHHHHHHH
Confidence 699999999999999999998642111 112245666555544444356788999999953 23333334
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
...++|++++|++++..+.......+..+.. ++.. .+++|+||+|+... ..++..... +..++...+..
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~-lgi~---~iIVVlNKiDlv~~--~~~~~v~~e-----i~~~l~~~~~~ 139 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQL-TGNP---MLTVALTKADRVDE--ARIAEVRRQ-----VKAVLREYGFA 139 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEECCccCCH--HHHHHHHHH-----HHHHHHhcCCC
Confidence 4567899999999986677777777665543 3321 46789999999865 555544444 54454433211
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.......|+.++.++.+|++.|..+..
T Consensus 140 ---~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 140 ---EAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred ---CCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 011235688888999999999987654
No 80
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.56 E-value=2.7e-13 Score=107.28 Aligned_cols=158 Identities=20% Similarity=0.192 Sum_probs=91.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|+.|+|||||++.+++... ......+.+.+.....+.. ++ ..+.++|+||... +....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF--SEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQER-----------FRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 4899999999999999999997754 1111122222222333334 33 4678999999432 12222
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
......+|++++|+|..+.-+... ..++..+....... .|++++.||+|..... ..-.+. ...+....
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~--~pivvv~nK~D~~~~~-~~~~~~--------~~~~~~~~ 135 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPN--VVIMLVGNKSDLEDQR-QVSREE--------AEAFAEEH 135 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhccccc-CCCHHH--------HHHHHHHc
Confidence 233457899999999873222222 12333333333222 3899999999976430 111111 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++ ..|+..+.++.++++.+.+.+
T Consensus 136 ~~~~~------e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 136 GLPFF------ETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 33322 456677889999998877654
No 81
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.56 E-value=1.4e-13 Score=109.32 Aligned_cols=160 Identities=16% Similarity=0.107 Sum_probs=90.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|..|+|||||++.+++... .. ....++..+.....+... ....+.++||+|... +.....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRF-VS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-----------YLEVRN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CC-CCCCccceeEEEEEEEECCeEEEEEEEECCccHH-----------HHHHHH
Confidence 4899999999999999999997753 11 111111111112222221 235678999999532 112222
Q ss_pred ccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhcc---ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGK---NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~---~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
..+.+++++++|+|.+++-+-. ...++..+...+.. ....|+++|.||+|+........++ ...+..
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 138 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDE---------GRLWAE 138 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHH---------HHHHHH
Confidence 3346789999999987332222 22344455444432 1224899999999986320011111 111222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
..+..++ ..|+..+.++.++++.+.+.
T Consensus 139 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 139 SKGFKYF------ETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred HcCCeEE------EEECCCCCCHHHHHHHHHHH
Confidence 2232232 56777888999999887654
No 82
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.56 E-value=2e-13 Score=110.50 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=91.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
++|+|+|..|+|||||++.+++... ......|+...+. .+...+ ...+.++||+|... +...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~----~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKF----PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC----CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHH
Confidence 4899999999999999999986653 1122223222222 222211 23578999999543 1222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+.++|++++|+|.+++-+-... .++..+... ... .|+++|.||.|+... ......+.. .....+..
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~--~piilv~nK~Dl~~~--~~~~~~v~~---~~~~~~~~ 137 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CPG--TPIMLVGLKTDLRKD--KNLDRKVTP---AQAESVAK 137 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCC--CCEEEEEeChhhhhC--ccccCCcCH---HHHHHHHH
Confidence 22345688999999999844333222 133333322 222 389999999998643 110000000 01222333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+...+ ...|+..+.++.+++..+...+.
T Consensus 138 ~~~~~~~-----~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 138 KQGAFAY-----LECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred HcCCcEE-----EEccCCCCCCHHHHHHHHHHHHH
Confidence 3333122 25677888999999988766553
No 83
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.56 E-value=2.3e-13 Score=107.98 Aligned_cols=158 Identities=18% Similarity=0.156 Sum_probs=91.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|.+|+|||||++.+++... .... ..+.........+.+ ++ ..+.++||+|... +....
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~-~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~-----------~~~~~ 69 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSF-NPSF-ISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQER-----------FRTIT 69 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcC-Cccc-ccCccceEEEEEEEE-CCEEEEEEEEeCCchHH-----------HHHHH
Confidence 6999999999999999999986642 2211 111112222223333 33 3678999999432 11222
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..+|++++++|+++..+-.. ..++..+....... .++++|.||+|+........++ ........
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 138 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASED--VERMLVGNKCDMEEKRVVSKEE---------GEALADEY 138 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCHHH---------HHHHHHHc
Confidence 233457899999999873322222 22333333332222 3899999999987431111111 22233332
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..+ ...|+..+.++.+++..+.+.+
T Consensus 139 ~~~~------~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 139 GIKF------LETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred CCEE------EEEeCCCCCCHHHHHHHHHHHH
Confidence 3222 2567778889999998876654
No 84
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.56 E-value=2.5e-13 Score=107.53 Aligned_cols=156 Identities=21% Similarity=0.178 Sum_probs=87.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+++|..|+|||||++.+++... ......++...+. .... ++ ..+.++||||.... ..+.
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~--------~~~~-- 67 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF----VTDYDPTIEDSYTKQCEI-DGQWAILDILDTAGQEEF--------SAMR-- 67 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC----CcccCCCccceEEEEEEE-CCEEEEEEEEECCCCcch--------hHHH--
Confidence 6999999999999999999986543 1111122222111 2223 33 35778999996542 1121
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.......|++++|+++++.-+-.. ..++..+..... ....|++++.||+|+... ..+... . ...+...
T Consensus 68 -~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~~--~~~~~~--~-----~~~~~~~ 136 (164)
T cd04145 68 -EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQ--RKVSRE--E-----GQELARK 136 (164)
T ss_pred -HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCcccccc--ceecHH--H-----HHHHHHH
Confidence 122346799999999873322222 222333333221 112389999999998643 111100 0 1122222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
.+..+ ...|+..+.++.++++.+...
T Consensus 137 ~~~~~------~~~Sa~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 137 LKIPY------IETSAKDRLNVDKAFHDLVRV 162 (164)
T ss_pred cCCcE------EEeeCCCCCCHHHHHHHHHHh
Confidence 22222 256778888999998877553
No 85
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.56 E-value=1.4e-13 Score=110.02 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=89.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|..|+|||||++.+.... |.. . ..|+...+..... .+..+.++||+|... +.....
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~-~~~--~--~~t~~~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~~~ 75 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGE-SVT--T--IPTIGFNVETVTY-KNISFTVWDVGGQDK-----------IRPLWR 75 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-CCC--c--CCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 3799999999999999999995322 211 1 1222222333334 567888999999543 222223
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccc--cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
..+.+++++++|+|.+++-+-.+ ..+.+..++... ...|++||.||.|+... ...+++... +. + ...
T Consensus 76 ~~~~~ad~ii~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~-~-~~~ 144 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRDRIDE--AREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEK-----LG-L-HSI 144 (175)
T ss_pred HHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHH-----hC-c-ccc
Confidence 34567899999999873322111 122222222111 11389999999998643 211222111 10 0 001
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
..+.+. ...+|++.+.++.++++.|...
T Consensus 145 ~~~~~~---~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 145 RDRNWY---IQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred CCCcEE---EEEeeCCCCCCHHHHHHHHHHH
Confidence 111111 1246888899999999987654
No 86
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.56 E-value=1.1e-13 Score=133.40 Aligned_cols=161 Identities=22% Similarity=0.179 Sum_probs=105.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|+|.+|+|||||+|.|+|...-..... .++|.+.......+ ++..+.++||+|+.... ..+...+......
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~-pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 350 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDT-PGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV---EGIDSAIASQAQI 350 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCC-CCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC---ccHHHHHHHHHHH
Confidence 5899999999999999999998753111122 23344444444455 67889999999987421 2234445555555
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
+...+|++++|+|++..++..+..+...+... + .|+++|+||+|.... ... .......-...
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-~----~pvIlV~NK~D~~~~--~~~-----------~~~~~~lg~~~ 412 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-G----KPVVLAVNKIDDQAS--EYD-----------AAEFWKLGLGE 412 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEECcccccc--hhh-----------HHHHHHcCCCC
Confidence 56688999999999867777777666666532 2 389999999997643 111 11111110111
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
. ...|+..+.++.+|++.+...+.
T Consensus 413 ~------~~iSA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 413 P------YPISAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred e------EEEECCCCCCchHHHHHHHHhcc
Confidence 1 24688889999999988776653
No 87
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.56 E-value=2e-13 Score=108.15 Aligned_cols=158 Identities=16% Similarity=0.137 Sum_probs=89.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... .. ....+.........+.. ++ ..+.++||+|... +....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~-----------~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF-TS-AFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQER-----------YRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CC-CCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 5899999999999999999986653 11 11111111111122222 22 4678999999432 22222
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+.+.+++++|+|.++.-+-.. ..++..+....... .++++|.||+|+........+ . ...+....
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piivv~nK~Dl~~~~~~~~~-~--------~~~~~~~~ 136 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVILVGNKCDMEDERVVSSE-R--------GRQLADQL 136 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CCEEEEEECcccCcccccCHH-H--------HHHHHHHc
Confidence 344568899999999873322211 22333333332222 379999999998644101111 1 12222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++ ..|+..+.++.++++.+...+
T Consensus 137 ~~~~~------~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 137 GFEFF------EASAKENINVKQVFERLVDII 162 (165)
T ss_pred CCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 22222 467788899999999876654
No 88
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.56 E-value=2.5e-13 Score=127.14 Aligned_cols=165 Identities=19% Similarity=0.193 Sum_probs=106.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc--cccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA--FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+++|+.++|||||+++|+|... +.. ....+.|.+.....+.+ .+..++++|+||.. .+...+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~e-E~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe-----------~f~~~~ 67 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPE-EKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHE-----------KFISNA 67 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChh-HhcCCceEEeEEEEEEe-CCEEEEEEECCCHH-----------HHHHHH
Confidence 3799999999999999999998542 111 12344566665555555 56888999999942 233444
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+..++|++++|+|+++.........+..+.. .+- .++++|+||+|+... ..++..... +..++...+
T Consensus 68 ~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv~~--~~~~~~~~e-----i~~~l~~~~ 136 (581)
T TIGR00475 68 IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGI---PHTIVVITKADRVNE--EEIKRTEMF-----MKQILNSYI 136 (581)
T ss_pred HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCCCH--HHHHHHHHH-----HHHHHHHhC
Confidence 445567899999999985555555555554433 332 149999999999865 444433333 444444322
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.. ........|+.++.++.++.+.+..++..
T Consensus 137 ~~--~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 137 FL--KNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred CC--CCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 10 00112356788888999998887776654
No 89
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.56 E-value=1.3e-13 Score=110.82 Aligned_cols=160 Identities=13% Similarity=0.078 Sum_probs=90.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+.+|+|+|..|+|||||++.+..... .. . ..|+...+..+.. .+..+.++||+|... +....
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~-~~-~---~~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~ 78 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEV-VT-T---IPTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPLW 78 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCc-cc-c---CCccccceEEEEE-CCEEEEEEECCCCHh-----------HHHHH
Confidence 357999999999999999999964322 11 1 1122222223333 567889999999542 22222
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccc--cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...+.++|++++|+|+++.-+-.+ ....+...+... ...+++||.||.|+... ...++.... +. +..
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----l~--~~~ 147 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEK-----LG--LHS 147 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHH-----hC--CCc
Confidence 334568899999999873221111 112222222211 12389999999997643 111211111 10 011
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..+.+. ...+|++++.++.++++.|...+
T Consensus 148 ~~~~~~~---~~~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 148 VRQRNWY---IQGCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred ccCCcEE---EEeeeCCCCCCHHHHHHHHHHHH
Confidence 1111111 12567888999999999887654
No 90
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.55 E-value=4e-13 Score=106.98 Aligned_cols=157 Identities=15% Similarity=0.136 Sum_probs=91.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.+.+... .. ....|+...+ ..+.. ++ ..+.++||+|... +...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~l 66 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF-PD---YHDPTIEDAYKQQARI-DNEPALLDILDTAGQAE-----------FTAM 66 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CC---CcCCcccceEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHH
Confidence 6899999999999999998885542 11 1111222111 12233 33 4578999999543 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHH-HHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...|++++|+|.+++.+-.... ++..+..... ....|+++|.||+|+... ..+... . ...+...
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~--~~v~~~--~-----~~~~a~~ 136 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ--RQVTTE--E-----GRNLARE 136 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc--CccCHH--H-----HHHHHHH
Confidence 233455789999999998555544433 3333443321 112389999999997543 111100 0 1122222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ .+|+..+.++.++++.+...+
T Consensus 137 ~~~~~~------e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 137 FNCPFF------ETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred hCCEEE------EEecCCCCCHHHHHHHHHHHH
Confidence 232222 567888899999998776544
No 91
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.55 E-value=6.8e-14 Score=109.98 Aligned_cols=154 Identities=16% Similarity=0.047 Sum_probs=86.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|..|+|||||++.|+.... .. . ..|+...+..+.+ .+..+.++||||... +......+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~-~~-~---~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV-VT-T---IPTIGFNVETVTY-KNLKFQVWDLGGQTS-----------IRPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC-cC-c---CCccCcCeEEEEE-CCEEEEEEECCCCHH-----------HHHHHHHH
Confidence 589999999999999999975543 11 1 1122222233334 567889999999653 11222233
Q ss_pred CCCccEEEEEeecCCCCCHH--HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 101 KDGIHAFLVVFSVTNRFSQE--EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
+.+++++++|+|+++..+.. .......+..... ...|+++|+||+|+... ....+.... +. ......
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~--~~~~~i~~~-----~~--~~~~~~ 132 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEEL--KGAVLLVFANKQDMPGA--LSEAEISEK-----LG--LSELKD 132 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhh--cCCcEEEEEeCCCCCCC--CCHHHHHHH-----hC--ccccCC
Confidence 45789999999987322111 1112222221110 12399999999998644 222221111 10 000001
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
... .....|+..+.++.++++.+.
T Consensus 133 ~~~---~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 133 RTW---SIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred CcE---EEEEeeccCCCCHHHHHHHHh
Confidence 100 123678888999999998764
No 92
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.55 E-value=2.6e-13 Score=107.54 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=89.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
+|+|+|..|||||||++.+++.. |... ... +.......... .....+.++||+|..... ..+ ..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~-~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~----~~ 66 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEE-FPEN-VPR--VLPEITIPADVTPERVPTTIVDTSSRPQDR-------ANL----AA 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc-CCcc-CCC--cccceEeeeeecCCeEEEEEEeCCCchhhh-------HHH----hh
Confidence 79999999999999999998654 2221 111 11111111111 134577899999965421 111 12
Q ss_pred cCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchh-hHHHHhccCCCchHHHHHHhc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK-TLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~-~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.....|++++|+|+++.-+-.. ..++..+..... . .|+++|.||+|+...... .+++.+. .+....
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~pviiv~nK~Dl~~~~~~~~~~~~~~--------~~~~~~ 135 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-K--VPIILVGNKSDLRDGSSQAGLEEEML--------PIMNEF 135 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhcccccchhHHHHHHH--------HHHHHH
Confidence 2357899999999874333333 234444544332 2 389999999998754110 1122211 111211
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
... ......|+.++.++.++++.+...+
T Consensus 136 ~~~----~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 136 REI----ETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred hcc----cEEEEeccccccCHHHHHHHHHHHh
Confidence 110 0122668888899999998776653
No 93
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.55 E-value=9.9e-14 Score=109.01 Aligned_cols=154 Identities=14% Similarity=0.091 Sum_probs=86.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+++|..|+|||||++.+..... .. . ..|+...+..+.. ....+.++||+|... +.......
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~-~~--~--~pt~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~~ 64 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEI-VT--T--IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRHY 64 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-cc--c--CCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHH
Confidence 799999999999999999964332 11 1 1122222222333 567789999999642 22222334
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccc--cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
+.++|++++|+|.++..+-.+ ..+.+..+.... ...|++|+.||.|+... ...++.... +. +.....
T Consensus 65 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~--~~~~~~ 133 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERIGE--AREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDK-----LG--LHSLRN 133 (159)
T ss_pred hcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHH-----hC--ccccCC
Confidence 568899999999873322111 112222222111 11389999999998643 222222211 10 001111
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
+... ....|++++.++.++++.|.
T Consensus 134 ~~~~---~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 134 RNWY---IQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred CCEE---EEEeeCCCCCCHHHHHHHHh
Confidence 1111 13568888999999988764
No 94
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.55 E-value=2.8e-13 Score=126.16 Aligned_cols=161 Identities=16% Similarity=0.201 Sum_probs=100.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|+.|+|||||++.|.+... .. ...++.|.....+.+.+.++..++|+||||..+. .....
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v-~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-----------~~~r~ 153 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKV-AQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-----------TSMRA 153 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCc-cc-ccCCceeecceEEEEEECCCcEEEEEECCCCcch-----------hhHHH
Confidence 36999999999999999999987653 11 2223445555555555533448999999996542 12223
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.+....|++++|+++++.........+..+.. .+ .|+++++||+|+...+...+...+.. +......++.
T Consensus 154 rga~~aDiaILVVda~dgv~~qT~e~i~~~~~-~~----vPiIVviNKiDl~~~~~e~v~~~L~~-----~g~~~~~~~~ 223 (587)
T TIGR00487 154 RGAKVTDIVVLVVAADDGVMPQTIEAISHAKA-AN----VPIIVAINKIDKPEANPDRVKQELSE-----YGLVPEDWGG 223 (587)
T ss_pred hhhccCCEEEEEEECCCCCCHhHHHHHHHHHH-cC----CCEEEEEECcccccCCHHHHHHHHHH-----hhhhHHhcCC
Confidence 34567899999999875555555555544332 22 28999999999864322233333332 1111222222
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
...+ ...|+.++.++.+|++.+..
T Consensus 224 ~~~~----v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 224 DTIF----VPVSALTGDGIDELLDMILL 247 (587)
T ss_pred CceE----EEEECCCCCChHHHHHhhhh
Confidence 1111 25788899999999988754
No 95
>PRK11058 GTPase HflX; Provisional
Probab=99.55 E-value=2.7e-13 Score=121.92 Aligned_cols=164 Identities=18% Similarity=0.093 Sum_probs=99.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|||.+|||||||+|.|+|...+.. ..-..|.+.....+.+.+...+.++||+|+... .+ ......+...+ .
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~--~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~-lp-~~lve~f~~tl-~ 272 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAA--DQLFATLDPTLRRIDVADVGETVLADTVGFIRH-LP-HDLVAAFKATL-Q 272 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeec--cCCCCCcCCceEEEEeCCCCeEEEEecCccccc-CC-HHHHHHHHHHH-H
Confidence 4899999999999999999998775321 111234444444455533447889999998432 12 22233444433 3
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHH-HHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAV-HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
....+|++++|+|+++..+......+ ..+..+...+ .|+++|+||+|+... .. ..... . ..+.
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~--~pvIiV~NKiDL~~~--~~--~~~~~---------~-~~~~ 336 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHE--IPTLLVMNKIDMLDD--FE--PRIDR---------D-EENK 336 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCC--CCEEEEEEcccCCCc--hh--HHHHH---------H-hcCC
Confidence 34678999999999855444443332 3333332112 389999999998643 11 01111 0 0111
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+ ...|++++.++.+|++.|...+.
T Consensus 337 ~~~-----v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 337 PIR-----VWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred Cce-----EEEeCCCCCCHHHHHHHHHHHhh
Confidence 111 24688889999999999887764
No 96
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.55 E-value=1.2e-13 Score=109.10 Aligned_cols=158 Identities=13% Similarity=0.046 Sum_probs=87.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|..|+|||||++.|++...+..... .|.......+.. .+..+.++||||... +.......
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFEK-GNLSFTAFDMSGQGK-----------YRGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEEE-CCEEEEEEECCCCHh-----------hHHHHHHH
Confidence 589999999999999999997643221111 111111222233 567889999999543 12222233
Q ss_pred CCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhc-cccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~-~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
+.+++++++|+|.++..+-.. ...+..+..... .....|+++|+||+|+... ....++... +. +......
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~-----l~-~~~~~~~ 137 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKITQL-----LG-LENIKDK 137 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHHHHH-----hC-CccccCc
Confidence 467899999999873332211 222333322110 0112489999999998654 221111111 00 0000011
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
... ....|++.+.++.++++.|.
T Consensus 138 ~~~----~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 138 PWH----IFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred eEE----EEEeeCCCCCchHHHHHHHh
Confidence 111 23568888999999998764
No 97
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.55 E-value=2.1e-13 Score=107.98 Aligned_cols=158 Identities=19% Similarity=0.177 Sum_probs=90.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... ..... .|....+. ..... ....+.++||+|..... .+.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~---~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~--- 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF-RESYI---PTIEDTYRQVISCSKNICTLQITDTTGSHQFP--------AMQ--- 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCCcC---CcchheEEEEEEECCEEEEEEEEECCCCCcch--------HHH---
Confidence 5899999999999999999986542 11111 11111111 11221 23467799999976421 111
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccc-cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~-~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...+...+++++|+|+++.-+... ..++..+....+.. ...|+++|.||+|+... ..+.... .......
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~-------~~~~~~~ 137 (165)
T cd04140 67 RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK--REVSSNE-------GAACATE 137 (165)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc--CeecHHH-------HHHHHHH
Confidence 123346799999999884443332 33445555543321 22489999999998642 1111000 1111122
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
....+ ...|++.+.++.++++.|..+
T Consensus 138 ~~~~~------~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 138 WNCAF------METSAKTNHNVQELFQELLNL 163 (165)
T ss_pred hCCcE------EEeecCCCCCHHHHHHHHHhc
Confidence 22222 256888899999999887553
No 98
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.55 E-value=1.5e-13 Score=108.36 Aligned_cols=157 Identities=20% Similarity=0.177 Sum_probs=88.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|..|+|||||++.|++... .. ....+.+.......+.... ...+.++||+|... +.....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~~~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKF-KE-DSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER-----------FRSVTR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CC-CCCCceeeeEEEEEEEECCEEEEEEEEECcchHH-----------HHHhHH
Confidence 3799999999999999999986653 11 1111111111112222211 24678999999532 112222
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
.....+|++++|+|+++..+-.. ..++..+......+. +++++.||+|.........++ ...+....+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 136 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNI--VVILVGNKSDLADQREVTFLE---------ASRFAQENG 136 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEEchhcchhccCCHHH---------HHHHHHHcC
Confidence 33457899999999984333222 233344444433333 899999999986431011111 222333333
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
..++ ..|+..+.++.++++.+..
T Consensus 137 ~~~~------~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 137 LLFL------ETSALTGENVEEAFLKCAR 159 (161)
T ss_pred CEEE------EEECCCCCCHHHHHHHHHH
Confidence 2222 5577788899999887654
No 99
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.55 E-value=1.5e-13 Score=109.70 Aligned_cols=156 Identities=15% Similarity=0.065 Sum_probs=88.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+++|..|+|||||++.|++... .. . ..|....+..+.+ ++..+.++||||... +.....
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~-~~-~---~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~ 77 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEV-VH-T---SPTIGSNVEEIVY-KNIRFLMWDIGGQES-----------LRSSWN 77 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC-CC-c---CCccccceEEEEE-CCeEEEEEECCCCHH-----------HHHHHH
Confidence 47999999999999999999986543 11 1 1222233333444 567889999999643 222222
Q ss_pred ccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc-
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC- 176 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~- 176 (363)
..+.++|++++|+|.++.-+-. ....+..+....+ -...|++++.||.|+... ...++.... +. ....
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~~--~~~~~i~~~-----l~--~~~~~ 147 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKGA--MTPAEISES-----LG--LTSIR 147 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCCC--CCHHHHHHH-----hC--ccccc
Confidence 3345789999999987331111 1122222221111 012389999999998643 112221111 10 0000
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
...+. ....|+..+.++.++++.|.
T Consensus 148 ~~~~~----~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 148 DHTWH----IQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred CCceE----EEecccCCCCCHHHHHHHHh
Confidence 11111 23568888899999988764
No 100
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.55 E-value=3.8e-13 Score=106.56 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=89.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|.+|+|||||++.+++... .. ....+.+.+.....+.. ++ ..+.++||+|... +....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEF-NL-DSKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQER-----------YRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CC-CCCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHHHH
Confidence 5899999999999999999997653 11 11122222222223333 33 3578999999432 22222
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...+++++|+|+++..+-.+ ..++..+....... .|+++|.||+|+........+ . ...+....
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~~~~~~~~-~--------~~~~~~~~ 138 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSN--IVIMLVGNKSDLRHLRAVPTE-E--------AKAFAEKN 138 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccccCCHH-H--------HHHHHHHc
Confidence 233456799999999873333222 22334444433222 389999999998643101111 1 12222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
+..++ ..|+..+.++.++++.+...
T Consensus 139 ~~~~~------~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 139 GLSFI------ETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred CCEEE------EEECCCCCCHHHHHHHHHHH
Confidence 22222 56778888999998876543
No 101
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.55 E-value=3.6e-13 Score=106.39 Aligned_cols=154 Identities=21% Similarity=0.192 Sum_probs=87.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe--EEEEee---CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLK---DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~---~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
.+|+|+|..|+|||||++.+++... .. ....|....+ ..+... ....+.++||||... +.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~-~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~ 65 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIF-TK---DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-----------FD 65 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CC---CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-----------HH
Confidence 3799999999999999999996543 11 1112222221 222221 234688999999432 22
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
......+...|++++|+++++.-+-.. ..++..+..... + .|+++|.||.|+........++ ...+.
T Consensus 66 ~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~-~--~p~iiv~nK~Dl~~~~~v~~~~---------~~~~~ 133 (162)
T cd04106 66 AITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-D--IPMVLVQTKIDLLDQAVITNEE---------AEALA 133 (162)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhcccccCCCHHH---------HHHHH
Confidence 222334567899999999873322222 223333333222 2 3899999999986541111111 12233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
...+..++ ..|+..+.++.++++.+..
T Consensus 134 ~~~~~~~~------~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 134 KRLQLPLF------RTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHcCCeEE------EEECCCCCCHHHHHHHHHH
Confidence 33333332 4567778889998887654
No 102
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.54 E-value=3.1e-13 Score=111.70 Aligned_cols=161 Identities=20% Similarity=0.142 Sum_probs=94.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE--eEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.+|+|+|..|+|||||++.+++... ......|.... ...+...+ ...+.++||+|... ...
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~----~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-----------~~~ 65 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF----GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-----------GGK 65 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC----CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-----------HHH
Confidence 3799999999999999999986643 11122233222 22333322 34678999999432 122
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhcc-ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
.....+.++|++++|+|+++.-+-.. ..++..+...... ....++++|.||+|+.... ....+. ...+.
T Consensus 66 l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~-~v~~~~--------~~~~~ 136 (215)
T cd04109 66 MLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR-TVKDDK--------HARFA 136 (215)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc-ccCHHH--------HHHHH
Confidence 22233567899999999883323222 2344555554332 1122688899999986431 111111 22233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
...+..++ ..|++.+.++.++++.+...+..
T Consensus 137 ~~~~~~~~------~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 137 QANGMESC------LVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred HHcCCEEE------EEECCCCCCHHHHHHHHHHHHHh
Confidence 33332222 46888899999999988776543
No 103
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.54 E-value=3.8e-13 Score=108.88 Aligned_cols=164 Identities=17% Similarity=0.103 Sum_probs=92.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|.+|+|||||++.+++... .. ....|....+ ..... ++ ..+.++||+|.... ...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~-~~---~~~~t~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~-----------~~l 64 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYF-PQ---VYEPTVFENYVHDIFV-DGLHIELSLWDTAGQEEF-----------DRL 64 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CC---ccCCcceeeeEEEEEE-CCEEEEEEEEECCCChhc-----------ccc
Confidence 3799999999999999999986543 11 1111221111 12222 33 46789999996431 112
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc----CC-CchH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PKPL 169 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~----~~-~~~~ 169 (363)
....+..++++++|+++++.-+-... .++..+..... + .|+++|.||+|+... ....+.... .. .+..
T Consensus 65 ~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~--~piilvgNK~Dl~~~--~~~~~~~~~~~~~~v~~~~~ 139 (189)
T cd04134 65 RSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-G--VKLVLVALKCDLREA--RNERDDLQRYGKHTISYEEG 139 (189)
T ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccC--hhhHHHHhhccCCCCCHHHH
Confidence 22345678999999998844332222 34455544332 2 389999999998654 222211110 00 0001
Q ss_pred HHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+....+...+ ...|++.+.++.+++..+...+.
T Consensus 140 ~~~~~~~~~~~~-----~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 140 LAVAKRINALRY-----LECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred HHHHHHcCCCEE-----EEccCCcCCCHHHHHHHHHHHHh
Confidence 122222222112 25788888999999998876654
No 104
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.54 E-value=5.1e-13 Score=106.12 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=91.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe--EEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+|++||..|+|||||++.+++.. |.. ....|+...+ ..+...+ ...+.++||+|... +....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~-f~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV-FDK---NYKATIGVDFEMERFEILGVPFSLQLWDTAGQER-----------FKCIA 66 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCC---CCCCceeeEEEEEEEEECCEEEEEEEEeCCChHH-----------HHhhH
Confidence 79999999999999999999654 321 1122322222 2222311 24678999999542 22222
Q ss_pred hccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcch-hhHHHHhccCCCchHHHHHHh
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE-KTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~-~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...+.++|++++|+|+++.-+.. ...++..+....... ..++++|.||.|+..... ...++. ...+...
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~iilVgnK~Dl~~~~~~~~~~~~--------~~~~~~~ 137 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPS-SVLLFLVGTKKDLSSPAQYALMEQD--------AIKLAAE 137 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEChhcCccccccccHHH--------HHHHHHH
Confidence 34456889999999997322222 223344333322111 126889999999754311 011111 1222233
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.+..++ ..|+..+.++.++++.+..++.+
T Consensus 138 ~~~~~~------e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 138 MQAEYW------SVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred cCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 333333 45778889999999988776644
No 105
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.54 E-value=8.5e-14 Score=109.70 Aligned_cols=157 Identities=14% Similarity=0.096 Sum_probs=85.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|..|+|||||++.+++....... .|....+.......+..+.++||+|... +.......
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~-----~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTI-----PTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccccc-----CccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 5899999999999999999977542111 1221222223332356789999999543 12222223
Q ss_pred CCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
+...|++++|+|.++..+-.. ...+..+..... ....|+++|+||+|.... ...++.... +. ....+...
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~i~~~-----~~-~~~~~~~~ 135 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEH-IKGVPVVLLANKQDLPGA--LTAEEITRR-----FK-LKKYCSDR 135 (160)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECcccccC--cCHHHHHHH-----cC-CcccCCCC
Confidence 456799999999873322111 112222211110 012389999999998543 222222111 00 00000000
Q ss_pred eEEecCCCcccccchhHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
.. .....|+..+.++.++++.|.
T Consensus 136 ~~---~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 136 DW---YVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred cE---EEEecccccCCChHHHHHHHh
Confidence 00 122578888999999998764
No 106
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.54 E-value=2.2e-13 Score=109.29 Aligned_cols=161 Identities=15% Similarity=0.093 Sum_probs=91.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+++|..|+|||||++.+..... .. . ..|+......+.. .+..+.++|++|... +...
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~-~~-~---~pt~g~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~ 77 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-VT-T---IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPL 77 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-cc-c---cCCcceeEEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 3457999999999999999999974332 11 1 1122222223333 567889999999432 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccc--cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+.++|++++|+|+++.-+-.+ ....+...+... ...|++||.||.|+... ...+++... ++ +.
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~--~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-----l~--l~ 146 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDK-----LG--LH 146 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHH-----hC--cc
Confidence 3334567899999999873322111 122333332211 12389999999998654 222222221 10 00
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+.+. ...+|++++.++.++++.|...+
T Consensus 147 ~~~~~~~~---~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 147 SLRQRHWY---IQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred ccCCCceE---EEeccCCCCCCHHHHHHHHHHHH
Confidence 00111111 12457888999999999876654
No 107
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=3.8e-13 Score=103.34 Aligned_cols=162 Identities=17% Similarity=0.195 Sum_probs=107.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||.|+..+.+..- ......++-++.....+.+ ++ ..+.+|||.|. +.++...
T Consensus 10 FKiiliGds~VGKtCL~~Rf~~~~f--~e~~~sTIGVDf~~rt~e~-~gk~iKlQIWDTAGQ-----------ERFrtit 75 (205)
T KOG0084|consen 10 FKIILIGDSGVGKTCLLLRFKDDTF--TESYISTIGVDFKIRTVEL-DGKTIKLQIWDTAGQ-----------ERFRTIT 75 (205)
T ss_pred EEEEEECCCCcChhhhhhhhccCCc--chhhcceeeeEEEEEEeee-cceEEEEEeeecccc-----------HHHhhhh
Confidence 4899999999999999999986553 1122233344555555655 44 36789999993 4566777
Q ss_pred hccCCCccEEEEEeecCCCCCH-HHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...++++|++|+|+|++..-+- .-..++..+.......+ +.++|.||+|+... .....- ....+....
T Consensus 76 ~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v--~~lLVGNK~Dl~~~--~~v~~~-------~a~~fa~~~ 144 (205)
T KOG0084|consen 76 SSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENV--PKLLVGNKCDLTEK--RVVSTE-------EAQEFADEL 144 (205)
T ss_pred HhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCC--CeEEEeeccccHhh--eecCHH-------HHHHHHHhc
Confidence 7888999999999999843332 33456666776665554 88999999998754 111100 011222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
+-..+ .++|++...++++.+..+...+...
T Consensus 145 ~~~~f-----~ETSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 145 GIPIF-----LETSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred CCcce-----eecccCCccCHHHHHHHHHHHHHHh
Confidence 22212 2678888889999888887776553
No 108
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.54 E-value=1.4e-13 Score=108.24 Aligned_cols=155 Identities=14% Similarity=0.061 Sum_probs=86.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|..|+|||||++.+++... . ....|....+..+.+ .+..+.++|+||.... .......
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~----~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-V----TTIPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----------RPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-C----CCCCCcCcceEEEEE-CCEEEEEEECCCChhh-----------HHHHHHH
Confidence 589999999999999999998762 1 111222222233333 5678899999995431 1122223
Q ss_pred CCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 101 KDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
+...|++++|+|+++.-+.. ....+..+..... ....+++++.||+|.... ...++.... +.... ....
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~--~~~~~~~~~-----~~~~~--~~~~ 133 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA--LSVSELIEK-----LGLEK--ILGR 133 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc--cCHHHHHHh-----hChhh--ccCC
Confidence 35679999999987321111 1122222222111 112389999999998764 322222221 11110 0111
Q ss_pred eEEecCCCcccccchhHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
.. .....|++.+.++.++++.|.
T Consensus 134 ~~---~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 134 RW---HIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred cE---EEEEeeCCCCCCHHHHHHHHh
Confidence 11 122457778889998887664
No 109
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.54 E-value=5.3e-13 Score=106.53 Aligned_cols=161 Identities=19% Similarity=0.133 Sum_probs=91.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|||..|+|||||++.+.+.. |.. ....|+...+. .+.. ++ ..+.++||+|.... ...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~-f~~---~~~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK-FPS---EYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDY-----------DRL 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCC---CCCCceeeeeEEEEEE-CCEEEEEEEEECCCccch-----------hhh
Confidence 589999999999999999998543 321 12223322221 2223 33 46779999996542 112
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCC-----CchH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PKPL 169 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~-----~~~~ 169 (363)
....+..+|++++|+|.+++-+-... .++..+..... + .|+++|.||.|+... ..+.+.+.... .+..
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~~~--~~~~~~l~~~~~~~v~~~~~ 140 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-K--TPFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETG 140 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhC--hhhHHHhhhccCCCcCHHHH
Confidence 22345678999999998844333332 24444443322 2 389999999998644 22222221100 0111
Q ss_pred HHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
..+....+...+ ...|++++.++.++++.+-.
T Consensus 141 ~~~a~~~~~~~~-----~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 141 EKLARDLKAVKY-----VECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred HHHHHHhCCcEE-----EEecCCCCCCHHHHHHHHHH
Confidence 222222222112 26688889999999886654
No 110
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.54 E-value=3.9e-13 Score=109.03 Aligned_cols=162 Identities=16% Similarity=0.133 Sum_probs=92.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... .......+.........+.. ++ ..+.|+||||... +....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQER-----------FRSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CccCcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHhh
Confidence 3799999999999999999986543 11111111111111111222 33 4678999999422 22222
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..+|++++|+|+++.-+-.. ..++..+....... .|+++|.||.|+........+ . ...+....
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~~~~~-~--------~~~l~~~~ 136 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMSGERVVKRE-D--------GERLAKEY 136 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccchhccccCHH-H--------HHHHHHHc
Confidence 233457899999999973322222 23444444443222 389999999998643001111 1 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
+..++ ..|+..+.++.+++..+...+...
T Consensus 137 ~~~~~------e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 137 GVPFM------ETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 32332 567888899999999988776553
No 111
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.54 E-value=4.3e-13 Score=106.02 Aligned_cols=152 Identities=20% Similarity=0.279 Sum_probs=98.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccC-----CCCCceeeEeEEEEee-CC--cEEEEEeCCCCCCCCCChHH---
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSEF--- 88 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~-----~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~--- 88 (363)
.+|+|||.+|.|||||+|+|+......+... ..+.|+.......... ++ -+++++|||||+|...++..
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWeP 126 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEP 126 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHH
Confidence 5899999999999999999986554332111 1222333333333221 22 36789999999986543321
Q ss_pred ----HHHHHHHHH----------hccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcc
Q 017924 89 ----VGKEIVKCL----------GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (363)
Q Consensus 89 ----~~~~~~~~~----------~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~ 153 (363)
+..+...++ ..-..++|+++|++..+ +.+...+...++.+.+.. |++-|+.|.|-+.-
T Consensus 127 I~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIakaDtlTl- 199 (336)
T KOG1547|consen 127 IEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKADTLTL- 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeecccccH-
Confidence 122222222 12235789999999876 788888888888777653 79999999998876
Q ss_pred hhhHHHHhccCCCchHHHHHHhcCCceEEec
Q 017924 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFD 184 (363)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (363)
+....|.+. ++.-+...+...+.+.
T Consensus 200 -eEr~~Fkqr-----I~~el~~~~i~vYPq~ 224 (336)
T KOG1547|consen 200 -EERSAFKQR-----IRKELEKHGIDVYPQD 224 (336)
T ss_pred -HHHHHHHHH-----HHHHHHhcCccccccc
Confidence 555556655 6656666555555544
No 112
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.54 E-value=4.4e-13 Score=106.47 Aligned_cols=159 Identities=14% Similarity=0.106 Sum_probs=88.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|||.+|+|||||++.+++... .. ....+.+.+.....+.... ...+.++||+|... +.....
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~ 71 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRF-QP-VHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES-----------FRSITR 71 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 6999999999999999999997653 11 1111111222222222311 24678999999432 222223
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
......|++++|+|+++.-+-.. ..++..+....... .++++|.||.|+........++ ...+....+
T Consensus 72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pvivv~nK~Dl~~~~~~~~~~---------~~~~~~~~~ 140 (168)
T cd01866 72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSN--MTIMLIGNKCDLESRREVSYEE---------GEAFAKEHG 140 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCHHH---------HHHHHHHcC
Confidence 34457899999999873222211 22333333332222 3899999999987431111111 112222222
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+ ...|+..+.++.+++..+...+
T Consensus 141 ~~~------~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 141 LIF------METSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred CEE------EEEeCCCCCCHHHHHHHHHHHH
Confidence 222 2567778889999887766544
No 113
>COG2262 HflX GTPases [General function prediction only]
Probab=99.54 E-value=3.5e-13 Score=115.72 Aligned_cols=167 Identities=22% Similarity=0.157 Sum_probs=109.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
+.-..|++||-+|||||||+|+|+|...+..+.-. .|.+.......+.++..+.+-||.||...- ...+...|...
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LF--ATLdpttR~~~l~~g~~vlLtDTVGFI~~L--P~~LV~AFksT 265 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLF--ATLDPTTRRIELGDGRKVLLTDTVGFIRDL--PHPLVEAFKST 265 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeecccccc--ccccCceeEEEeCCCceEEEecCccCcccC--ChHHHHHHHHH
Confidence 34469999999999999999999998875433322 344444555555457888999999997632 33445555555
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHH-HHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
+... ..+|.++.|+|+++......... ...+.++-..+ .|+++|+||+|.+.+ ......+.. .
T Consensus 266 LEE~-~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~~~--~~~~~~~~~-----------~ 329 (411)
T COG2262 266 LEEV-KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLLED--EEILAELER-----------G 329 (411)
T ss_pred HHHh-hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEecccccCc--hhhhhhhhh-----------c
Confidence 5433 47899999999985533333333 33333331122 499999999998866 331111111 1
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.. +....|+.++.+++.|.+.|...+..
T Consensus 330 ~~-------~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 330 SP-------NPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred CC-------CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 11 22345888899999999999888764
No 114
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.54 E-value=6.1e-14 Score=108.16 Aligned_cols=139 Identities=19% Similarity=0.221 Sum_probs=80.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|.+|+|||||+|.|++... ... .|.. ..+ .. .++||||.... .....+.+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~----~~~--~t~~-----~~~-~~---~~iDt~G~~~~-------~~~~~~~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI----LYK--KTQA-----VEY-ND---GAIDTPGEYVE-------NRRLYSALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc----ccc--ccee-----EEE-cC---eeecCchhhhh-------hHHHHHHHHHH
Confidence 799999999999999999997753 111 1211 112 11 48999996321 11111222223
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCce
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 180 (363)
+.++|++++|+|+++..+.....++. .++ .++++|+||+|+.... ...+ . ...+....+...
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~~----~p~ilv~NK~Dl~~~~-~~~~-~--------~~~~~~~~~~~~ 121 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFAS----IFV----KPVIGLVTKIDLAEAD-VDIE-R--------AKELLETAGAEP 121 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHH----hcc----CCeEEEEEeeccCCcc-cCHH-H--------HHHHHHHcCCCc
Confidence 67899999999997444433322222 222 2899999999986431 1111 1 222333322211
Q ss_pred EEecCCCcccccchhHHHHHHHHH
Q 017924 181 VLFDNKTKDEAKGTEQVRQLLSLV 204 (363)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~l 204 (363)
....|++.+.+++++++.+
T Consensus 122 -----~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 122 -----IFEISSVDEQGLEALVDYL 140 (142)
T ss_pred -----EEEEecCCCCCHHHHHHHH
Confidence 1256778888999988765
No 115
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.54 E-value=1.3e-13 Score=111.09 Aligned_cols=164 Identities=9% Similarity=0.006 Sum_probs=90.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+++|.+|||||||++.+++.......+ |.......+.. ++..+.++|++|... .....
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~~ 78 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQP-----TQHPTSEELAI-GNIKFTTFDLGGHQQ-----------ARRLW 78 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcccCC-----ccccceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 44899999999999999999999764311111 22222233333 567888999999643 12222
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCc-chhhHHHHhccCCCchHHHHHH
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~-~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
..++..+|++++|+|+++. ..-. .....+..++.. ....|+++|+||.|+... +...+...+.- .....
T Consensus 79 ~~~~~~ad~ii~vvD~~~~-~~~~-~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l------~~~~~ 150 (184)
T smart00178 79 KDYFPEVNGIVYLVDAYDK-ERFA-ESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGL------TNTTG 150 (184)
T ss_pred HHHhCCCCEEEEEEECCcH-HHHH-HHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCC------Ccccc
Confidence 3345688999999998722 1111 111122222211 012389999999998533 11223323221 00000
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.+...-.........|+..+.++.++++.|..
T Consensus 151 ~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 151 SKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 00000000112346788888999999998754
No 116
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.54 E-value=3e-13 Score=106.93 Aligned_cols=156 Identities=21% Similarity=0.145 Sum_probs=89.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee--EeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|+.|+|||||+|.+++... ......+... ....+.+. ....+.++|+||... +...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~-----------~~~~ 66 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEF----SENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER-----------YRSL 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC----CCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHH-----------HHHH
Confidence 6899999999999999999997764 1111112111 11222221 234678999999422 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCH-HHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+.+.|++++|+|.++.-+- ....++..+....... .+++++.||.|.........++ ...+...
T Consensus 67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~~~~~~---------~~~~~~~ 135 (163)
T cd01860 67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPN--IIIALVGNKADLESKRQVSTEE---------AQEYADE 135 (163)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccCcCCHHH---------HHHHHHH
Confidence 22234578999999998722221 2233444444443222 2789999999976431011111 1222233
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
.+..+ ...|+.++.++.++++.+...
T Consensus 136 ~~~~~------~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 136 NGLLF------FETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred cCCEE------EEEECCCCCCHHHHHHHHHHH
Confidence 23222 356777888999999887654
No 117
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.54 E-value=7.6e-13 Score=109.40 Aligned_cols=158 Identities=14% Similarity=0.061 Sum_probs=93.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE--EEee-CCcEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|||..|+|||||++.++... |.. ....|+...+.. +... ....+.++||+|....
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~-f~~---~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------- 75 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE-FEK---KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------- 75 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCC-CCC---ccCCccceeEEEEEEEECCeEEEEEEEECCCchhh-----------
Confidence 445799999999999999999876433 211 111222222222 2221 2357789999996542
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
.......+.+.+++++|+|.+++.+-.. ..++..+...+. . .++++|.||+|+... ....+. + .+
T Consensus 76 ~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~--~piilvgNK~Dl~~~--~v~~~~--------~-~~ 141 (219)
T PLN03071 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-N--IPIVLCGNKVDVKNR--QVKAKQ--------V-TF 141 (219)
T ss_pred hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEEchhhhhc--cCCHHH--------H-HH
Confidence 1222234567899999999984433322 234444544432 2 389999999997532 111111 1 12
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
....+..|+ .+|++.+.++.+++..+...+.
T Consensus 142 ~~~~~~~~~------e~SAk~~~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 142 HRKKNLQYY------EISAKSNYNFEKPFLYLARKLA 172 (219)
T ss_pred HHhcCCEEE------EcCCCCCCCHHHHHHHHHHHHH
Confidence 222222332 5688889999999988876654
No 118
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.53 E-value=3e-13 Score=106.95 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=87.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee-eEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|||||||++.+++... .. ....|+. .....+.. ++ ..+.++||+|..... .+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~~~-- 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF-VE---KYDPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQFT--------AMR-- 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-Cc---ccCCchhhhEEEEEEE-CCEEEEEEEEECCCccccc--------hHH--
Confidence 5899999999999999999985542 21 1111221 11122223 33 356789999965421 122
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhH-HHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l-~~~~~~~~~~~~~~~~~ 174 (363)
...+.+.|++++|++.++.-+-.. ..++..+...... ...|+++|.||+|+... ..+ .+. ...+..
T Consensus 67 -~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~~~--------~~~~~~ 134 (163)
T cd04136 67 -DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLEDE--RVVSREE--------GQALAR 134 (163)
T ss_pred -HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--ceecHHH--------HHHHHH
Confidence 223457899999999873322222 2233344433221 12389999999998643 111 111 112222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
..+..+ ...|++.+.++.++++.+..
T Consensus 135 ~~~~~~------~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 135 QWGCPF------YETSAKSKINVDEVFADLVR 160 (163)
T ss_pred HcCCeE------EEecCCCCCCHHHHHHHHHH
Confidence 223222 25677888999999887754
No 119
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.53 E-value=2.1e-13 Score=109.77 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=88.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe--eCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+++|..|+|||||++.+++.......++.+ .......+.. ..+..+.++||+|... +...
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKG---FNTEKIKVSLGNSKGITFHFWDVGGQEK-----------LRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccc---cceeEEEeeccCCCceEEEEEECCCcHh-----------HHHH
Confidence 3799999999999999999998654311111111 1111111211 1345788999999532 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCc-chhhHHHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~-~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+.++|++++|+|+++.-+-.+ ...+..+..... ....|+++|+||+|.... ....++.++.. . .
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~------~---~ 138 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNALSVSEVEKLLAL------H---E 138 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccccCCHHHHHHHhCc------c---c
Confidence 2333567899999999873211111 112222322221 122489999999998643 11112211111 0 0
Q ss_pred hcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.... ...+ ...|+..+.++.++++.|.+.+
T Consensus 139 ~~~~~~~~~----~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 139 LSASTPWHV----QPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred cCCCCceEE----EEeecccCCCHHHHHHHHHHHH
Confidence 0000 1111 2568888999999999876654
No 120
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.53 E-value=3.1e-13 Score=109.56 Aligned_cols=159 Identities=18% Similarity=0.209 Sum_probs=89.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+|+|+|..|+|||||++.+++.. |... ...+.. ......... ++. .+.++||+|... +.....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~-f~~~-~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH-FVET-YDPTIE-DSYRKQVVV-DGQPCMLEVLDTAGQEE-----------YTALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcc-CCCchH-hhEEEEEEE-CCEEEEEEEEECCCchh-----------hHHHHH
Confidence 58999999999999999998543 2211 111111 111112222 333 477899999543 111222
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhcc-ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
..+.+.|++++|+|+++.-+-.. ..++..+...... ....|+++|.||+|+... ..+... . ...+....
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~--~~v~~~--~-----~~~~~~~~ 136 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE--REVSTE--E-----GAALARRL 136 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc--CccCHH--H-----HHHHHHHh
Confidence 33457899999999874333222 2334444443221 122389999999998643 111100 0 11222333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+..++ ..|+..+.++.+++..+...+.
T Consensus 137 ~~~~~------e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 137 GCEFI------EASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred CCEEE------EecCCCCCCHHHHHHHHHHHHH
Confidence 32222 5678888999999998776543
No 121
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.53 E-value=2e-13 Score=130.18 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=100.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|+.|+|||||++.|.+.... . ...++.|.....+.+.+ ++..++||||||..++ .....
T Consensus 290 ~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~-~e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F-----------~~m~~ 355 (787)
T PRK05306 290 PPVVTIMGHVDHGKTSLLDAIRKTNVA-A-GEAGGITQHIGAYQVET-NGGKITFLDTPGHEAF-----------TAMRA 355 (787)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcc-c-cccCceeeeccEEEEEE-CCEEEEEEECCCCccc-----------hhHHH
Confidence 369999999999999999999865431 1 22344555555566666 6788999999997653 11222
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.+....|++++|+++++.........+..+.. .+ .|+++++||+|+...+...+...+.. ...+...++.
T Consensus 356 rga~~aDiaILVVdAddGv~~qT~e~i~~a~~-~~----vPiIVviNKiDl~~a~~e~V~~eL~~-----~~~~~e~~g~ 425 (787)
T PRK05306 356 RGAQVTDIVVLVVAADDGVMPQTIEAINHAKA-AG----VPIIVAINKIDKPGANPDRVKQELSE-----YGLVPEEWGG 425 (787)
T ss_pred hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh-cC----CcEEEEEECccccccCHHHHHHHHHH-----hcccHHHhCC
Confidence 33456799999999986666665555554433 22 28999999999864311112111111 1111122222
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.+. ....|+.++.++.+|++.|..
T Consensus 426 ~vp----~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 426 DTI----FVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred Cce----EEEEeCCCCCCchHHHHhhhh
Confidence 111 135688889999999988764
No 122
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.53 E-value=3.1e-13 Score=106.99 Aligned_cols=156 Identities=22% Similarity=0.180 Sum_probs=87.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee-EeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+|+|+|..|+|||||++++++... .... ..|... ....... ++ ..+.++||||..... .+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~-~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~--------~~~~-- 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF-VDDY---DPTIEDSYRKQIEI-DGEVCLLDILDTAGQEEFS--------AMRD-- 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-Cccc---CCchhhhEEEEEEE-CCEEEEEEEEECCCcccch--------HHHH--
Confidence 799999999999999999987543 2111 112211 1122222 33 456789999965421 1211
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
..+...+++++|+++++.-+-.. ..+...+...... ...|+++|.||+|+........+ . ...+....
T Consensus 67 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~~~~~~~-~--------~~~~~~~~ 135 (164)
T smart00173 67 -QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESERVVSTE-E--------GKELARQW 135 (164)
T ss_pred -HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccceEcHH-H--------HHHHHHHc
Confidence 22346799999999873322222 1223333332221 12389999999998643101111 1 12223333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++ ..|+..+.++.++++.+.+.+
T Consensus 136 ~~~~~------~~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 136 GCPFL------ETSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred CCEEE------EeecCCCCCHHHHHHHHHHHH
Confidence 32332 567788899999998876544
No 123
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.53 E-value=5.4e-13 Score=108.56 Aligned_cols=161 Identities=19% Similarity=0.220 Sum_probs=89.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe--EEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.+|+|+|..|+|||||++.+++... ..... ..|+...+ ..+.. ++. .+.++||+|.... ..+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~-~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~--------~~~-- 66 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRF-LVGPY--QNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERY--------EAM-- 66 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCc-CCcCc--ccceeeEEEEEEEEE-CCEEEEEEEEECCCchhh--------hhh--
Confidence 3899999999999999999986543 21111 12222222 12233 333 4569999995431 112
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+.+.|++++|+|+++.-+-.. ..++..+.... . ..|+++|.||+|+.... ...... . ......+..
T Consensus 67 -~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~--~~piilv~nK~Dl~~~~-~~~~~v-~---~~~~~~~~~ 137 (193)
T cd04118 67 -SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-E--HCKIYLCGTKSDLIEQD-RSLRQV-D---FHDVQDFAD 137 (193)
T ss_pred -hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC-C--CCCEEEEEEcccccccc-cccCcc-C---HHHHHHHHH
Confidence 2223457899999999873322111 23344443321 1 23899999999976431 000000 0 001222223
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+..++ ..|+..+.++.++++.+.+.+.
T Consensus 138 ~~~~~~~------~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 138 EIKAQHF------ETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 3222222 4577788899999998876653
No 124
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.53 E-value=6.9e-13 Score=105.18 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=89.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... .. ....+.+.+.....+.. ++ ..+.++||+|... +....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~-----------~~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY-TE-SYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQER-----------FRTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CC-CCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHh-----------HHHHH
Confidence 5899999999999999999986543 11 11112222222223333 33 3678999999432 11122
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..+|++++|+|.++.-+-.. ..++..+....... .++++|.||+|+........++ ...+....
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~--~~~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 137 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTDKRVVDYSE---------AQEFADEL 137 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEEChhcccccCCCHHH---------HHHHHHHc
Confidence 223457899999999873222111 12333333332122 3899999999976441111111 12222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++ ..|+..+.++.+++..+.+.+
T Consensus 138 ~~~~~------~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 138 GIPFL------ETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred CCeEE------EEECCCCcCHHHHHHHHHHHH
Confidence 32232 567778889999998876654
No 125
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.53 E-value=3.7e-13 Score=106.70 Aligned_cols=154 Identities=17% Similarity=0.153 Sum_probs=88.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe--EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.+|+|+|..|+|||||++.+++... . .....|+.... ..+.. ++ ..+.++||+|... +..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~-~---~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~ 66 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF-M---ADCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQER-----------FRA 66 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-C---CCCCcccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 5899999999999999999986642 2 11222222222 22223 33 3578999999432 222
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhH-HHHhccCCCchHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEIL 173 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l-~~~~~~~~~~~~~~~~ 173 (363)
.....+.+++++++|+|.+++-+-.. ..++..+....... .++++|.||+|+... ..+ .+. ...+.
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~~--~~~~~~~--------~~~~~ 134 (166)
T cd04122 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEAQ--RDVTYEE--------AKQFA 134 (166)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCcCHHH--------HHHHH
Confidence 23334567899999999873322222 22333333332222 379999999998644 111 111 22222
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
...+..++ ..|+..+.++.+++..+...
T Consensus 135 ~~~~~~~~------e~Sa~~~~~i~e~f~~l~~~ 162 (166)
T cd04122 135 DENGLLFL------ECSAKTGENVEDAFLETAKK 162 (166)
T ss_pred HHcCCEEE------EEECCCCCCHHHHHHHHHHH
Confidence 22222222 56788889999988766543
No 126
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.53 E-value=7.6e-13 Score=106.44 Aligned_cols=160 Identities=15% Similarity=0.081 Sum_probs=89.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-----------CCcEEEEEeCCCCCCCCCChHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------DGQVVNVIDTPGLFDLSAGSEF 88 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~l~DtpG~~~~~~~~~~ 88 (363)
.+|+|+|..|+|||||++.+++... .... ..++..+.......+. ....+.++||+|..
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~-~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------- 74 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKF-NPKF-ITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE-------- 74 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CccC-CCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH--------
Confidence 7999999999999999999986542 2111 1111111111112110 12467899999932
Q ss_pred HHHHHHHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCc
Q 017924 89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPK 167 (363)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~ 167 (363)
.+.......+..+|++++|+|+++.-+-.. ..++..+..... ....++++|.||+|+........+ .
T Consensus 75 ---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~v~~~-~------- 142 (180)
T cd04127 75 ---RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVSEE-Q------- 142 (180)
T ss_pred ---HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhcCccCHH-H-------
Confidence 233333344567899999999873322222 223333333211 112379999999998643101111 1
Q ss_pred hHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...+....+..+ ...|+..+.++.++++.+...+
T Consensus 143 -~~~~~~~~~~~~------~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 143 -AKALADKYGIPY------FETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred -HHHHHHHcCCeE------EEEeCCCCCCHHHHHHHHHHHH
Confidence 222333333222 2568888899999998876644
No 127
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.53 E-value=3.4e-13 Score=106.71 Aligned_cols=157 Identities=18% Similarity=0.184 Sum_probs=87.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|||||||++.++... |... ...|+... ...+.. ++ ..+.++||+|.... ..+.
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~-~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~--------~~~~-- 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI-FVEK---YDPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQF--------TAMR-- 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC-CCcc---cCCcchheEEEEEEE-CCEEEEEEEEECCCcccc--------hhHH--
Confidence 689999999999999999988442 2211 11122111 122223 33 35679999996532 1122
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...+.+.|++++|+|.++.-+-.+ ..++..+..... ....|+++|.||+|+........+ . ...+...
T Consensus 67 -~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~ 135 (164)
T cd04175 67 -DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKE-Q--------GQNLARQ 135 (164)
T ss_pred -HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhccEEcHH-H--------HHHHHHH
Confidence 223456799999999873322222 223344433221 112389999999998643001111 0 1122222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|++.+.++.+++..+...+
T Consensus 136 ~~~~~~------~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 136 WGCAFL------ETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred hCCEEE------EeeCCCCCCHHHHHHHHHHHh
Confidence 232222 567788899999998876543
No 128
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.53 E-value=6.7e-13 Score=104.43 Aligned_cols=162 Identities=23% Similarity=0.151 Sum_probs=91.4
Q ss_pred EEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCC
Q 017924 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG 103 (363)
Q Consensus 24 lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (363)
|+|..|+|||||+|.|++......... .+.+...............+.++||||+.+...........+. .....
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~----~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPV-PGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELAR----RVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCC-CCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHH----HHHHh
Confidence 589999999999999998765322222 2223333333333323678899999998875433322111222 22346
Q ss_pred ccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEe
Q 017924 104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF 183 (363)
Q Consensus 104 ~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (363)
+|+++++++............+..... . ..++++|+||+|.... ......... ..........
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-~----~~~~ivv~nK~D~~~~--~~~~~~~~~-----~~~~~~~~~~----- 138 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRE-R----GKPVLLVLNKIDLLPE--EEEEELLEL-----RLLILLLLLG----- 138 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh-c----CCeEEEEEEccccCCh--hhHHHHHHH-----HHhhcccccC-----
Confidence 799999999984544444432222221 1 2389999999998866 333332210 0001111111
Q ss_pred cCCCcccccchhHHHHHHHHHHHH
Q 017924 184 DNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 184 ~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
......++..+.++.++++.+...
T Consensus 139 ~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 139 LPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred CceEEEeeeccCCHHHHHHHHHhh
Confidence 112244666677888888876543
No 129
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.53 E-value=8e-13 Score=104.60 Aligned_cols=156 Identities=15% Similarity=0.130 Sum_probs=87.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc-cccccccCCCCCceeeEe--EEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR-KAFKASAGSSGVTKTCEM--KTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~-~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
++|+|+|..|+|||||++.|.+. ..|.. ....|+...+ ..+... ....+.++||+|.. .+.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~ 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPK---NYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE-----------LYS 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCc---cCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH-----------HHH
Confidence 48999999999999999999853 22221 1222222221 222221 23578899999942 222
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
.........+|++++|+|.++.-+-.. ..++..+.... ...++++|.||.|.... ..+.... ...+.
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~-------~~~~~ 134 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK--AEVTDAQ-------AQAFA 134 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc--cCCCHHH-------HHHHH
Confidence 222334467899999999873322221 23344443332 12389999999998644 2111110 11111
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
...+..++ ..|+.++.++.++++.+.+.
T Consensus 135 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 135 QANQLKFF------KTSALRGVGYEEPFESLARA 162 (164)
T ss_pred HHcCCeEE------EEeCCCCCChHHHHHHHHHH
Confidence 22122222 46777888999999877654
No 130
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.53 E-value=3.5e-13 Score=109.41 Aligned_cols=167 Identities=10% Similarity=0.008 Sum_probs=91.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|++|||||||++.|++...... ..|.......+.+ ++..+.++|+||... +...
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~-----~~T~~~~~~~i~~-~~~~~~l~D~~G~~~-----------~~~~ 79 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEELTI-GNIKFKTFDLGGHEQ-----------ARRL 79 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccCcceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 3458999999999999999999997653111 1122222233444 567888999999432 1122
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCc-chhhHHHHhccCCCchHHH--
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKE-- 171 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~-~~~~l~~~~~~~~~~~~~~-- 171 (363)
......+.+++++|+|.++.-+-. .....+...+.. ....|++++.||+|+... ....+..++.. .+....+
T Consensus 80 ~~~~~~~ad~iilV~D~~~~~s~~--~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~ 156 (190)
T cd00879 80 WKDYFPEVDGIVFLVDAADPERFQ--ESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGL-YGTTTGKGV 156 (190)
T ss_pred HHHHhccCCEEEEEEECCcHHHHH--HHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCc-ccccccccc
Confidence 223345779999999987221111 111222222221 122489999999998643 11233333321 0000000
Q ss_pred -HHHhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 172 -ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 172 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
.......... ...+|++.+.++.++++.+...
T Consensus 157 ~~~~~~~~~~~----~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 157 SLKVSGIRPIE----VFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccccCceeEE----EEEeEecCCCChHHHHHHHHhh
Confidence 0000011111 2367888999999999987653
No 131
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.53 E-value=7.4e-13 Score=105.35 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=87.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce--eeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK--TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.+|+|+|.+|||||||++.+++... ......+. ......+.+ .+ ..+.++|++|... +..
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~ 71 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLF----PPGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQER-----------FRS 71 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 6999999999999999999985543 11111222 222223333 33 3567899999532 112
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhH-HHHhccCCCchHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEIL 173 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l-~~~~~~~~~~~~~~~~ 173 (363)
.....+...|++++|+|.++.-+... ..++..+....... .++++|.||+|.... ..+ ..... .+.
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~~--~~i~~~~~~--------~~~ 139 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAER--REVSQQRAE--------EFS 139 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cccCHHHHH--------HHH
Confidence 22223457899999999873322211 12334444433323 278999999998643 111 11111 111
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
......++ ..|+..+.++.++++.+...
T Consensus 140 ~~~~~~~~------~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 140 DAQDMYYL------ETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred HHcCCeEE------EeeCCCCCCHHHHHHHHHHH
Confidence 22121222 56777888999999887653
No 132
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.52 E-value=4.3e-14 Score=110.57 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=84.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|.+|+|||||+|.|.|... ... .+. ...+ ... .+|||||..... ......+ ...
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~----~~~--~~~-----~v~~-~~~--~~iDtpG~~~~~---~~~~~~~----~~~ 61 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT----LAR--KTQ-----AVEF-NDK--GDIDTPGEYFSH---PRWYHAL----ITT 61 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc----cCc--cce-----EEEE-CCC--CcccCCccccCC---HHHHHHH----HHH
Confidence 799999999999999999998653 111 111 1112 111 269999976432 1112222 223
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCce
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 180 (363)
..++|++++|+|++...+... ..+... +. ..++++++||+|+...+ .+. +.+.+...+..
T Consensus 62 ~~~ad~il~v~d~~~~~s~~~----~~~~~~-~~--~~~ii~v~nK~Dl~~~~---~~~---------~~~~~~~~~~~- 121 (158)
T PRK15467 62 LQDVDMLIYVHGANDPESRLP----AGLLDI-GV--SKRQIAVISKTDMPDAD---VAA---------TRKLLLETGFE- 121 (158)
T ss_pred HhcCCEEEEEEeCCCcccccC----HHHHhc-cC--CCCeEEEEEccccCccc---HHH---------HHHHHHHcCCC-
Confidence 457899999999873322211 112222 11 12789999999975431 111 22223232221
Q ss_pred EEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
......|++.+.++.+|++.+.+.+.
T Consensus 122 ---~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 122 ---EPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred ---CCEEEEECCCccCHHHHHHHHHHhch
Confidence 12235688889999999998887763
No 133
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.52 E-value=4.9e-13 Score=105.99 Aligned_cols=114 Identities=15% Similarity=0.092 Sum_probs=69.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|..|||||||++.|++... .... .|.......+.. ++..+.++|++|... +.......
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~--~~~~---~t~g~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP--KKVA---PTVGFTPTKLRL-DKYEVCIFDLGGGAN-----------FRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC--cccc---CcccceEEEEEE-CCEEEEEEECCCcHH-----------HHHHHHHH
Confidence 489999999999999999997622 1111 122122223334 677889999999432 22222334
Q ss_pred CCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
+..+|++++|+|.++..+-.+ ...+..+..... ....|+++|.||.|+...
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~~ 115 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKKNA 115 (167)
T ss_pred HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCcCC
Confidence 567899999999873322221 222332222111 012489999999998654
No 134
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.52 E-value=1.4e-12 Score=104.02 Aligned_cols=162 Identities=18% Similarity=0.095 Sum_probs=89.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... .. ....+...+.......+ .+ ..+.++|+||... +....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF-SN-QYKATIGADFLTKEVTV-DDKLVTLQIWDTAGQER-----------FQSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-Cc-CcCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHhHH
Confidence 3899999999999999999986643 11 11111121122222333 33 3466999999533 11222
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
...+.+++++++++|+.+..+-... .+...+...+.. ....|+++|+||.|+........+ . ...+..
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~--------~~~~~~ 137 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTK-K--------AQQWCQ 137 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHH-H--------HHHHHH
Confidence 2334578999999998733222222 222222222221 112389999999999732101111 1 222333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+...+ ...|+..+.++.++++.+...+.
T Consensus 138 ~~~~~~~-----~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 138 SNGNIPY-----FETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred HcCCceE-----EEEECCCCCCHHHHHHHHHHHHH
Confidence 3331122 24677788999999998776553
No 135
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.52 E-value=8.2e-13 Score=108.09 Aligned_cols=160 Identities=14% Similarity=0.033 Sum_probs=90.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee--eEeEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.+|+|+|..|+|||||++.+++... .. ....|+. .....+.+. ....+.++||+|... +..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~-~~---~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-----------~~~ 65 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF-SQ---HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER-----------FGG 65 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CC---CCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh-----------hhh
Confidence 3799999999999999999986542 11 1112322 222233332 134678999999633 222
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhc--cccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~--~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
.....+.+++++++|+|+++.-+-... .++..+..... .....|+++|.||.|+........+ . +..+
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~-~--------~~~~ 136 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGE-Q--------MDQF 136 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHH-H--------HHHH
Confidence 223345678999999998733332222 22333333211 1122389999999998632001111 1 2223
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+...+ ...|++.+.++.++++.+...+
T Consensus 137 ~~~~~~~~~-----~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 137 CKENGFIGW-----FETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred HHHcCCceE-----EEEeCCCCCCHHHHHHHHHHHH
Confidence 333331112 2568888899999999877655
No 136
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.52 E-value=2.5e-13 Score=109.17 Aligned_cols=158 Identities=18% Similarity=0.199 Sum_probs=89.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc------cccc--cC-----CCCCceeeEeEEEEe----eCCcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA------FKAS--AG-----SSGVTKTCEMKTTVL----KDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~------~~~~--~~-----~~~~t~~~~~~~~~~----~~~~~~~l~DtpG~~~~ 82 (363)
.+|+++|..|+|||||++.|++... +... .. ..+.+.........+ ..+..+.++||||..+.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 3799999999999999999986421 0000 00 011222222112212 13456789999997652
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~ 162 (363)
... ...++.++|++++|+|++...+..+...+..+.. .. .++++|+||+|+... . ......
T Consensus 81 -------~~~----~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~--~~iiiv~NK~Dl~~~--~-~~~~~~ 141 (179)
T cd01890 81 -------SYE----VSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NN--LEIIPVINKIDLPSA--D-PERVKQ 141 (179)
T ss_pred -------HHH----HHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cC--CCEEEEEECCCCCcC--C-HHHHHH
Confidence 111 2223346899999999975555555444433221 12 279999999998643 1 111111
Q ss_pred cCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
. +...+ +... ......|+..+.++.+|++.+...
T Consensus 142 ~-----~~~~~---~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 142 Q-----IEDVL---GLDP---SEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred H-----HHHHh---CCCc---ccEEEeeccCCCCHHHHHHHHHhh
Confidence 2 22221 2110 112367888899999999887654
No 137
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.52 E-value=7.3e-13 Score=104.07 Aligned_cols=154 Identities=19% Similarity=0.171 Sum_probs=86.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE--EEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK--TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+++|..|+|||||++.|++... ......|....+. .+... ....+.++|+||... +...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~ 65 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKF----DENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-----------FRSI 65 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC----CCccCCceeeeeEEEEEEECCEEEEEEEEecCChHH-----------HHHH
Confidence 3799999999999999999987765 1111112222222 22221 235678999999532 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.......+|++++++|.++.-+... ..++..+...... ..++++++||+|..... ....+. ...+...
T Consensus 66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~-~~~~~~--------~~~~~~~ 134 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPE--NIPIILVGNKIDLEDQR-QVSTEE--------AQQFAKE 134 (159)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccccccc-cccHHH--------HHHHHHH
Confidence 2333456899999999873211111 2233333333211 23899999999986221 111111 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
....++ ..|+..+.++.++++.+.
T Consensus 135 ~~~~~~------~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 135 NGLLFF------ETSAKTGENVEELFQSLA 158 (159)
T ss_pred cCCeEE------EEecCCCCCHHHHHHHHh
Confidence 232333 456666778888887653
No 138
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.52 E-value=5.1e-13 Score=105.36 Aligned_cols=157 Identities=18% Similarity=0.124 Sum_probs=87.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|..|+|||||++.|++... .. ........+.....+... ....+.++||||.... .....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~ 67 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTF-DP-DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF-----------RTLTS 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-Cc-ccCCcccceEEEEEEEECCEEEEEEEEECCCchhh-----------hhhhH
Confidence 4899999999999999999997643 11 111111212222222231 1246789999995431 11112
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
......|++++|+|.++.-+-.. ..++..+..... ....++++|.||+|..... ...+ . ...+....+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~-~~~~-~--------~~~~~~~~~ 136 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENRE-VTRE-E--------GLKFARKHN 136 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccc-cCHH-H--------HHHHHHHcC
Confidence 23457899999999873322222 223344444432 1223789999999987331 1111 1 112222222
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
-.++ ..|+..+.++.++++.+.+
T Consensus 137 ~~~~------~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 137 MLFI------ETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred CEEE------EEecCCCCCHHHHHHHHHH
Confidence 2222 4577778899998887644
No 139
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.52 E-value=9.2e-13 Score=107.51 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=90.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|||..|+|||||++.+++... .. ....+.........+.. ++ ..+.++||+|... +...
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~-----------~~~~ 71 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF-SG-SYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQER-----------FRTI 71 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CC-CcCccccceeEEEEEEE-CCEEEEEEEEeCCCchh-----------HHHH
Confidence 37999999999999999999986643 11 11111111122222223 23 3677999999533 1122
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhH-HHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l-~~~~~~~~~~~~~~~~~ 174 (363)
....+...+++++|+|+++.-+-.. ..++..+..... ..++++|.||+|+... ..+ ... ...+..
T Consensus 72 ~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~piivVgNK~Dl~~~--~~~~~~~--------~~~~~~ 138 (199)
T cd04110 72 TSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD---DVCKVLVGNKNDDPER--KVVETED--------AYKFAG 138 (199)
T ss_pred HHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccc--cccCHHH--------HHHHHH
Confidence 2233456799999999874332222 223444433322 2388999999998643 111 111 112222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+..++ ..|+..+.++.++++.+...+.
T Consensus 139 ~~~~~~~------e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 139 QMGISLF------ETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred HcCCEEE------EEECCCCcCHHHHHHHHHHHHH
Confidence 2232222 5677788999999998776553
No 140
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.51 E-value=1e-12 Score=104.01 Aligned_cols=154 Identities=17% Similarity=0.132 Sum_probs=90.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-C--CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+|+|+|..|||||||++.++.... .. ....|....+....+. + ...+.++||+|..... .+.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~-~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~--- 66 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF-EK---KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFG--------GLR--- 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CC---CCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhc--------ccc---
Confidence 799999999999999999874432 11 1112322222222111 2 3467899999965421 111
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..+|++++|+|.++.-+... ..++..+....+ + .|+++|.||+|+... ..... ...+....
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~piiiv~nK~Dl~~~--~~~~~---------~~~~~~~~ 132 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-N--IPIVLCGNKVDIKDR--KVKAK---------QITFHRKK 132 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEEchhcccc--cCCHH---------HHHHHHHc
Confidence 122357899999999873333222 234455555443 2 389999999998633 11111 11122221
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
...++ .+|+..+.++.++++.|.+.+.
T Consensus 133 ~~~~~------e~Sa~~~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 133 NLQYY------EISAKSNYNFEKPFLWLARKLL 159 (166)
T ss_pred CCEEE------EEeCCCCCChHHHHHHHHHHHH
Confidence 22222 5688889999999998876654
No 141
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.51 E-value=2.8e-13 Score=123.35 Aligned_cols=162 Identities=18% Similarity=0.181 Sum_probs=95.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccccccc--------------c---------------cCCCCCceeeEeEEEEeeC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------S---------------AGSSGVTKTCEMKTTVLKD 67 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~ 67 (363)
.+..+|+|+|+.++|||||++.|++...... + .-..+.|.+.....+.+ +
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~ 82 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-D 82 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-C
Confidence 4558999999999999999999984422100 0 00244566665555555 6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCC--CCCHHHHHHHHHHHHHhccccccceEEEEe
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n 145 (363)
+..++|+||||..+. .+.+......+|++++|+|++. .+.......+..+.. ++. .++++++|
T Consensus 83 ~~~i~liDtpG~~~~-----------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivviN 147 (425)
T PRK12317 83 KYYFTIVDCPGHRDF-----------VKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVAIN 147 (425)
T ss_pred CeEEEEEECCCcccc-----------hhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEEEE
Confidence 788999999996442 1111222357899999999985 444444454444433 332 26889999
Q ss_pred CCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHH
Q 017924 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQL 200 (363)
Q Consensus 146 ~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 200 (363)
|+|+...+...++..... +..++...+.... .......|+..+.++.++
T Consensus 148 K~Dl~~~~~~~~~~~~~~-----i~~~l~~~g~~~~-~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 148 KMDAVNYDEKRYEEVKEE-----VSKLLKMVGYKPD-DIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred ccccccccHHHHHHHHHH-----HHHHHHhhCCCcC-cceEEEeecccCCCcccc
Confidence 999875321233333333 4444444332100 001124566666676653
No 142
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.51 E-value=6.4e-13 Score=109.57 Aligned_cols=119 Identities=18% Similarity=0.087 Sum_probs=75.3
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeC
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~ 146 (363)
.+..++++||||..+. .+.....+. ....|++++|+++...+...+...+.++... +. |+++|+||
T Consensus 82 ~~~~i~liDtpG~~~~-------~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~i----p~ivvvNK 147 (224)
T cd04165 82 SSKLVTFIDLAGHERY-------LKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALAL-NI----PVFVVVTK 147 (224)
T ss_pred CCcEEEEEECCCcHHH-------HHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEC
Confidence 4678899999995431 222222211 1357999999999877888887777776653 32 79999999
Q ss_pred CCCCCcchhhHHHHhccCCCchHHHHHHhcCCc--------------------eEEecCCCcccccchhHHHHHHHHHHH
Q 017924 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR--------------------CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 147 ~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
+|.... ..+...+.. +...+...+.. ...+-.....|+.++.+++.|+..|..
T Consensus 148 ~D~~~~--~~~~~~~~~-----l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 148 IDLAPA--NILQETLKD-----LKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccccCH--HHHHHHHHH-----HHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 998755 455555544 44444321111 001113345688888999999887764
No 143
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.50 E-value=7.3e-13 Score=107.26 Aligned_cols=158 Identities=20% Similarity=0.231 Sum_probs=89.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... .. ....+...+.....+.. ++ ..+.++||+|... +....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~-----------~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEF-SE-STKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQER-----------FRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CC-CCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHhhH
Confidence 3799999999999999999986653 11 11111222222223333 33 3567899999543 22222
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+.++|++++|+|.+++-+-... .++..+....... .+++++.||.|+... ..+.... ...+....
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~--~~v~~~~-------~~~~~~~~ 135 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNN--KVVDSNI-------AKSFCDSL 135 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccc--ccCCHHH-------HHHHHHHc
Confidence 3345678999999998733222221 2333333332222 378999999998744 2111110 11122222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++ ..|+..+.++.++++.+...+
T Consensus 136 ~~~~~------evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 136 NIPFF------ETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 22222 567777889999888776654
No 144
>PLN03110 Rab GTPase; Provisional
Probab=99.50 E-value=1.4e-12 Score=107.75 Aligned_cols=157 Identities=16% Similarity=0.144 Sum_probs=91.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|||..|+|||||++.|++... .. ....+...+.....+.. ++ ..+.|+||+|... +....
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~-~~-~~~~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~~-----------~~~~~ 78 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEF-CL-ESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQER-----------YRAIT 78 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CC-CCCCceeEEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHH
Confidence 6999999999999999999987653 11 11111112222222333 33 4678999999432 22223
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhH-HHHhccCCCchHHHHHHh
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQL 175 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l-~~~~~~~~~~~~~~~~~~ 175 (363)
...+...+++++|+|.++.-+-.. ..++..+....... .++++|.||+|+... ..+ .+. ...+...
T Consensus 79 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~--~~~~~~~--------~~~l~~~ 146 (216)
T PLN03110 79 SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLNHL--RSVAEED--------GQALAEK 146 (216)
T ss_pred HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcccc--cCCCHHH--------HHHHHHH
Confidence 334467899999999873333222 23444444443322 389999999997533 111 111 1122222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|+..+.++.++++.+...+
T Consensus 147 ~~~~~~------e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 147 EGLSFL------ETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 222222 567788889999988776554
No 145
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.50 E-value=7.9e-13 Score=108.60 Aligned_cols=113 Identities=23% Similarity=0.182 Sum_probs=70.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|+|..|+|||||++.+++... .. . ..|+...+....+ ....+.++||+|.... ..+. ..
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f-~~---~-~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~--------~~l~---~~ 63 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRF-KD---T-VSTVGGAFYLKQW-GPYNISIWDTAGREQF--------HGLG---SM 63 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC-CC---C-CCccceEEEEEEe-eEEEEEEEeCCCcccc--------hhhH---HH
Confidence 4799999999999999999986553 11 1 1232222222223 4557889999996542 1122 22
Q ss_pred cCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
.+..++++++|+|++++-+-... .++..+......+ .+++||.||+|+..
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~--~piIlVgNK~DL~~ 114 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANED--CLFAVVGNKLDLTE 114 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccccc
Confidence 34678999999999844333332 2333333322222 38899999999865
No 146
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.50 E-value=1.7e-12 Score=103.37 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=70.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+++|..|+|||||++.+++... .. ....+.........+.+ ++ ..+.++||+|.... ...+ .
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-------~~~~---~ 69 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF-PE-RTEATIGVDFRERTVEI-DGERIKVQLWDTAGQERF-------RKSM---V 69 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CC-ccccceeEEEEEEEEEE-CCeEEEEEEEeCCChHHH-------HHhh---H
Confidence 6899999999999999999986542 11 11111111122222333 33 46789999994321 1111 2
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
...+..+|++++|+|+++.-+-... .++..+..... ....|+++|.||+|+...
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~ 124 (170)
T cd04115 70 QHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQ 124 (170)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhh
Confidence 2334678999999999744333333 23333433321 122389999999997643
No 147
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.50 E-value=1e-12 Score=107.26 Aligned_cols=158 Identities=20% Similarity=0.242 Sum_probs=88.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCce-eeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+|+|+|..|+|||||++.+++... ... ...|+ ......+.+ .+ ..+.++||+|.... ..+ .
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~-~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~--------~~~---~ 64 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF-EPK---YRRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSF--------PAM---R 64 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-Ccc---CCCchhhheeEEEEE-CCEEEEEEEEECCCchhh--------hHH---H
Confidence 589999999999999999986543 111 11111 111222233 33 46789999996542 111 1
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH-h
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ-L 175 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~-~ 175 (363)
...+..+|++++|+|+++..+-... .++..+..... ....|+++|+||+|.....+....... . .... .
T Consensus 65 ~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~~v~~~~~-------~-~~~~~~ 135 (198)
T cd04147 65 KLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEEERQVPAKDA-------L-STVELD 135 (198)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEccccccccccccHHHH-------H-HHHHhh
Confidence 2234578999999998733222222 22233333322 122489999999998653111101000 1 1111 1
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.+..++ ..|+..+.++.++++.+...+.
T Consensus 136 ~~~~~~------~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 136 WNCGFV------ETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred cCCcEE------EecCCCCCCHHHHHHHHHHHhh
Confidence 111222 4678888999999998877553
No 148
>PTZ00369 Ras-like protein; Provisional
Probab=99.50 E-value=1.2e-12 Score=105.89 Aligned_cols=158 Identities=22% Similarity=0.173 Sum_probs=88.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
..+|+|+|.+|+|||||++.+++... .. ....|.... ...+.. ++ ..+.++||+|..+.. .+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~l-- 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF-ID---EYDPTIEDSYRKQCVI-DEETCLLDILDTAGQEEYS--------AM-- 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-Cc---CcCCchhhEEEEEEEE-CCEEEEEEEEeCCCCccch--------hh--
Confidence 47999999999999999999986543 11 111121111 122223 33 356789999976521 11
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+...+++++|+|+++.-+-.. ..++..+...... ...|+++|.||+|+... ..+.... ...+..
T Consensus 70 -~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~--~~i~~~~-------~~~~~~ 138 (189)
T PTZ00369 70 -RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDSE--RQVSTGE-------GQELAK 138 (189)
T ss_pred -HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--cccCHHH-------HHHHHH
Confidence 2223457899999999873333222 2233334333221 12389999999997533 1111000 111222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+..++ ..|+..+.++.+++..+.+.+
T Consensus 139 ~~~~~~~------e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 139 SFGIPFL------ETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred HhCCEEE------EeeCCCCCCHHHHHHHHHHHH
Confidence 2222222 567788889999888776544
No 149
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.50 E-value=1.9e-12 Score=106.48 Aligned_cols=161 Identities=15% Similarity=0.123 Sum_probs=90.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... .. ....++..+.....+...++ ..+.++||+|... +....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~-~~-~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRF-AE-VSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CC-CCCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HHHHH
Confidence 6899999999999999999996653 11 11111111222222222222 4678999999532 11222
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...|++++|+|+++.-+-.+ ..++..+...... ...++++|.||.|+.... ....+. ...+....
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~~-~v~~~~--------~~~~~~~~ 139 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQR-QVTREE--------AEKLAKDL 139 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEcccccccc-ccCHHH--------HHHHHHHh
Confidence 233467899999999873322222 2233334333221 112578889999986431 111111 12233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+..++ ..|+..+.++.++++.|.+.+.
T Consensus 140 ~~~~~------e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 140 GMKYI------ETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 32222 5677888999999998876543
No 150
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.50 E-value=1.5e-12 Score=103.73 Aligned_cols=161 Identities=17% Similarity=0.093 Sum_probs=87.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee-eEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.|++... ......+.. ......... ....+.++||||..... .+ .
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~--------~~---~ 65 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF----PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD--------RL---R 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccc--------cc---c
Confidence 4899999999999999999997653 111111111 111122221 13467899999976421 11 1
Q ss_pred hccCCCccEEEEEeecCCCCCHH--HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc---cCC-CchHHH
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQE--EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG---HEC-PKPLKE 171 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~---~~~-~~~~~~ 171 (363)
.......|++++|+|.++..+-. ...++..+..... ..|+++|.||+|+... ......+. ... ......
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~v~~~~~~~ 140 (171)
T cd00157 66 PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD--ENTLKKLEKGKEPITPEEGEK 140 (171)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc--hhhhhhcccCCCccCHHHHHH
Confidence 12335789999999987322221 1223333333322 2489999999998755 22111000 000 000122
Q ss_pred HHHhcCCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
+....+...+ ...|+..+.++.++++.+.
T Consensus 141 ~~~~~~~~~~-----~~~Sa~~~~gi~~l~~~i~ 169 (171)
T cd00157 141 LAKEIGAIGY-----MECSALTQEGVKEVFEEAI 169 (171)
T ss_pred HHHHhCCeEE-----EEeecCCCCCHHHHHHHHh
Confidence 2233232122 2567778889999988764
No 151
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.50 E-value=3.8e-13 Score=113.98 Aligned_cols=115 Identities=21% Similarity=0.269 Sum_probs=78.7
Q ss_pred EEEEEcCCCCchHHHHHHhh---ccccccc-------------ccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC
Q 017924 21 TVVLLGRTGNGKSATGNSIL---GRKAFKA-------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~---g~~~~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (363)
+|+|+|+.|+|||||+++|+ |.....+ .....+.|+......+.+ ++..++++||||..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df-- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDF-- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHH--
Confidence 58999999999999999996 3211000 111234555666666777 7889999999997652
Q ss_pred ChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+. ..+...+|++++|+|+.......+...++.+... + .|+++++||+|....
T Consensus 78 -----~~~~----~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-~----~p~ivviNK~D~~~a 131 (270)
T cd01886 78 -----TIEV----ERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-N----VPRIAFVNKMDRTGA 131 (270)
T ss_pred -----HHHH----HHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 1222 2333467999999999766766666666655432 2 289999999998754
No 152
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.49 E-value=1.7e-12 Score=103.39 Aligned_cols=159 Identities=17% Similarity=0.069 Sum_probs=88.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+++|..|+|||||++.+++... .... ..+.........+.. ++ ..+.++||+|... +..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~ 69 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKF-DTQL-FHTIGVEFLNKDLEV-DGHFVTLQIWDTAGQER-----------FRS 69 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCC-CcCc-CCceeeEEEEEEEEE-CCeEEEEEEEeCCChHH-----------HHH
Confidence 347999999999999999999986543 1111 111111111222333 33 3567899999432 222
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
.....+...|++++++++++.-+-... .++..+...... ....|+++|.||+|+... ....+. +..+
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~~ 139 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER--QVSTEE--------AQAW 139 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc--ccCHHH--------HHHH
Confidence 233345678999999998733322222 233333332211 112389999999998632 111111 2223
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
....+...+ ...|+..+.++.++++.+-
T Consensus 140 ~~~~~~~~~-----~e~Sa~~~~~v~~~~~~~~ 167 (170)
T cd04116 140 CRENGDYPY-----FETSAKDATNVAAAFEEAV 167 (170)
T ss_pred HHHCCCCeE-----EEEECCCCCCHHHHHHHHH
Confidence 333332222 2567778888888887654
No 153
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.49 E-value=1.4e-12 Score=104.35 Aligned_cols=160 Identities=19% Similarity=0.151 Sum_probs=89.8
Q ss_pred EEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
|+|+|..|+|||||++.+++... .. ....+....+ ..... ++. .+.++||+|..... ....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~~---~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~~ 64 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-PE---DYVPTVFENYSADVEV-DGKPVELGLWDTAGQEDYD-----------RLRP 64 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-CC---CCCCcEEeeeeEEEEE-CCEEEEEEEEECCCCcccc-----------hhch
Confidence 68999999999999999987543 21 1111222221 12222 333 57899999965421 1122
Q ss_pred ccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccC----CCchHHHH
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLKEI 172 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~----~~~~~~~~ 172 (363)
..+...|++++|+|+++.-+-... .++..+..... ..|+++|.||+|+.... ...+.+.... ..+....+
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~ 140 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEAL 140 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHH
Confidence 245678999999999733222222 23444444322 23999999999986531 1121111100 00112223
Q ss_pred HHhcCC-ceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 173 LQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 173 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
....+. .++ ..|++.+.++.++++.+...
T Consensus 141 ~~~~~~~~~~------e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 141 AKRIGAVKYL------ECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred HHHcCCcEEE------EecCCCCCCHHHHHHHHHHH
Confidence 333332 222 56788889999999877654
No 154
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.49 E-value=1.7e-12 Score=105.55 Aligned_cols=116 Identities=16% Similarity=0.249 Sum_probs=71.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc-ccccccc-------------CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR-KAFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~-~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 85 (363)
.+|+|+|..|+|||||++.|++. ..|.... ...+.+.......+.+ .+..+.++||||..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~---- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHAD---- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHH----
Confidence 58999999999999999999853 2221110 0012233333333444 577889999999654
Q ss_pred hHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
+......++.++|++++|+|+++.........+..+.. .. .++++|+||+|+...
T Consensus 78 -------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~~--~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 78 -------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---LG--LKPIVVINKIDRPDA 132 (194)
T ss_pred -------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---cC--CCEEEEEECCCCCCC
Confidence 22222233457899999999874433333333333221 12 389999999998643
No 155
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.49 E-value=8.1e-13 Score=124.94 Aligned_cols=164 Identities=14% Similarity=0.174 Sum_probs=99.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee---CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK---DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|+.|+|||||+++|++..... ...++.|.....+.+.+. .+..++|+||||... +.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~--~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-----------F~ 309 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQ--KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-----------FS 309 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCcc--ccCCccccccceEEEEEEecCCceEEEEEECCcHHH-----------HH
Confidence 34699999999999999999998654311 112334443333333332 247899999999532 33
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.....++..+|++++|+++++.........+..+.. . . .|+++++||+|........+...+.. +..+..
T Consensus 310 ~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~-~--~--iPiIVViNKiDl~~~~~e~v~~eL~~-----~~ll~e 379 (742)
T CHL00189 310 SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA-A--N--VPIIVAINKIDKANANTERIKQQLAK-----YNLIPE 379 (742)
T ss_pred HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh-c--C--ceEEEEEECCCccccCHHHHHHHHHH-----hccchH
Confidence 333334457899999999875665555555555432 1 2 28999999999875411122222221 100111
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+... .....|+..+.++.+|++.+....
T Consensus 380 ~~g~~v----pvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 380 KWGGDT----PMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred hhCCCc----eEEEEECCCCCCHHHHHHhhhhhh
Confidence 122111 123578888999999999876643
No 156
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.49 E-value=1.9e-12 Score=102.00 Aligned_cols=152 Identities=14% Similarity=0.167 Sum_probs=87.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE--eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
+|+|+|.+|+|||||++.+++... .. ....|.... ...+.. ++ ..+.++||+|... +...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~-~~---~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~-----------~~~~ 65 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEF-HS---SHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQER-----------YQTI 65 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CC---CCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHh-----------HHhh
Confidence 799999999999999998886543 11 111222222 222333 33 3567999999543 1112
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhH-HHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l-~~~~~~~~~~~~~~~~~ 174 (363)
....+..+|++++|+|++++-+-.+ ..++..+....... .++++|.||.|+... ..+ .+. ...+..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~--~~v~~~~--------~~~~~~ 133 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEG--VQKILIGNKADEEQK--RQVGDEQ--------GNKLAK 133 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCCCHHH--------HHHHHH
Confidence 2234467899999999874333222 22333333332222 388999999998643 111 111 112222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
..+..+ ..+|+..+.++.+++..|.+
T Consensus 134 ~~~~~~------~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 134 EYGMDF------FETSACTNSNIKESFTRLTE 159 (161)
T ss_pred HcCCEE------EEEeCCCCCCHHHHHHHHHh
Confidence 223222 26677888899999887754
No 157
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.49 E-value=1.5e-12 Score=102.77 Aligned_cols=158 Identities=16% Similarity=0.088 Sum_probs=87.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|..|+|||||+|.+++... . .....+.+.......+... ....+.++|++|... +.....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKF-N-EKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER-----------YHALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-C-CCcCCccceeEEEEEEEECCEEEEEEEEECCchHH-----------HHHhhH
Confidence 3799999999999999999996653 1 1111111111111222221 123678999999432 111122
Q ss_pred ccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+..+|++++|+|.++.-+.... .++..+...... ..++++++||+|......... +. ...+....+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~~~~~~-~~--------~~~~~~~~~ 136 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQRVVSK-SE--------AEEYAKSVG 136 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccCCCH-HH--------HHHHHHHcC
Confidence 233578999999998733222222 223334333332 238999999999874310111 11 222233223
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
..++ ..|+..+.++.++++.+...
T Consensus 137 ~~~~------~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 137 AKHF------ETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred CEEE------EEeCCCCCCHHHHHHHHHHH
Confidence 3332 45677788999998887553
No 158
>PLN03118 Rab family protein; Provisional
Probab=99.49 E-value=1.8e-12 Score=106.85 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=89.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|||..|+|||||++.|++... ... ..+.........+.+.+ ...+.|+||||.... .....
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~--~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-----------~~~~~ 80 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSV--EDL-APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF-----------RTLTS 80 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC--CCc-CCCceeEEEEEEEEECCEEEEEEEEECCCchhh-----------HHHHH
Confidence 7999999999999999999987653 111 11112222222333311 246789999996542 11122
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHH--HHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEET--AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
..+..+|++++|+|.++.-+-.... +...+. .+......++++|.||+|+........++ ........
T Consensus 81 ~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~-~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~---------~~~~~~~~ 150 (211)
T PLN03118 81 SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVE-LYSTNQDCVKMLVGNKVDRESERDVSREE---------GMALAKEH 150 (211)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH-HhcCCCCCCEEEEEECccccccCccCHHH---------HHHHHHHc
Confidence 2345789999999987332222221 112222 22111223788999999986431011111 11122222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+..+ ...|++.+.++.++++.|...+.
T Consensus 151 ~~~~------~e~SAk~~~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 151 GCLF------LECSAKTRENVEQCFEELALKIM 177 (211)
T ss_pred CCEE------EEEeCCCCCCHHHHHHHHHHHHH
Confidence 2222 25677788999999998877653
No 159
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.49 E-value=3.3e-12 Score=102.26 Aligned_cols=163 Identities=16% Similarity=0.133 Sum_probs=94.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||++.+++.. |.. ....|+...+ ..+.. ++ ..+.++||+|... +.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~-f~~---~~~pT~~~~~~~~~~~-~~~~~~l~iwDtaG~e~-----------~~ 67 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDC-FPE---NYVPTVFENYTASFEI-DTQRIELSLWDTSGSPY-----------YD 67 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC-CCC---ccCCceeeeeEEEEEE-CCEEEEEEEEECCCchh-----------hH
Confidence 45799999999999999999988543 221 1112222221 12222 33 4678999999532 22
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc----CCCch
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECPKP 168 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~----~~~~~ 168 (363)
......+.++|++++|+|++++-+-.. ..++..+..... . .+++||.||.|+.... ..+...... -..+.
T Consensus 68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~~~~-~~~~~~~~~~~~~v~~~~ 143 (182)
T cd04172 68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDL-TTLVELSNHRQTPVSYDQ 143 (182)
T ss_pred hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEeEChhhhcCh-hhHHHHHhcCCCCCCHHH
Confidence 233345678999999999985544443 245555555433 2 3899999999975321 111110000 00111
Q ss_pred HHHHHHhcCC-ceEEecCCCcccccchhH-HHHHHHHHHH
Q 017924 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNS 206 (363)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~l~~~l~~ 206 (363)
...+....+. .|+ ++|++++.+ +.+++..+-.
T Consensus 144 ~~~~a~~~~~~~~~------E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 144 GANMAKQIGAATYI------ECSALQSENSVRDIFHVATL 177 (182)
T ss_pred HHHHHHHcCCCEEE------ECCcCCCCCCHHHHHHHHHH
Confidence 3334444443 233 578888887 9998886554
No 160
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.48 E-value=7.9e-13 Score=110.11 Aligned_cols=115 Identities=20% Similarity=0.239 Sum_probs=75.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccc---ccc-------------CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFK---ASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~---~~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (363)
+|+|+|+.|+|||||+++|+...... +.. .....+.......+.+ ++..++++||||..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f-- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDF-- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccch--
Confidence 58999999999999999997542110 000 1122333344444555 7889999999998652
Q ss_pred ChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
...... +....|++++|+|+...........++.+... + .|+++++||+|....
T Consensus 78 -----~~~~~~----~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-~----~P~iivvNK~D~~~a 131 (237)
T cd04168 78 -----IAEVER----SLSVLDGAILVISAVEGVQAQTRILWRLLRKL-N----IPTIIFVNKIDRAGA 131 (237)
T ss_pred -----HHHHHH----HHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccccCC
Confidence 122222 33467999999998866666555566555432 3 288999999998754
No 161
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.48 E-value=1.7e-12 Score=103.11 Aligned_cols=161 Identities=14% Similarity=0.032 Sum_probs=88.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|.+|+|||||++.+++... .......+.........+.. ++ ..+.++|+.|..... .
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~-----------~ 69 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSF-SLNAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAI-----------L 69 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCC-CcccCCCccCcceEEEEEEE-CCeEEEEEEEecCCccccc-----------c
Confidence 447999999999999999999987653 20111111111122223333 33 356788998854321 1
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.....+.++|++++|+|+++.-+ ......++..... ....|+++|.||+|+... ... .... ..++...
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~~s--~~~~~~~~~~~~~-~~~~p~iiv~NK~Dl~~~--~~~--~~~~-----~~~~~~~ 137 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDPKS--FSYCAEVYKKYFM-LGEIPCLFVAAKADLDEQ--QQR--YEVQ-----PDEFCRK 137 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCHHH--HHHHHHHHHHhcc-CCCCeEEEEEEccccccc--ccc--cccC-----HHHHHHH
Confidence 11223467899999999873311 1111222222211 112489999999998543 110 0011 2222222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+.. .....|+..+.++.++++.+...+
T Consensus 138 ~~~~-----~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 138 LGLP-----PPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred cCCC-----CCEEEEeccCccHHHHHHHHHHHh
Confidence 2221 112457788889999988876654
No 162
>CHL00071 tufA elongation factor Tu
Probab=99.48 E-value=1.8e-12 Score=117.08 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=79.8
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhccccccc--------------ccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
+.+..+|+++|+.++|||||+++|++...... ..-..+.|.......+.+ ++..++|+||||..+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChHH
Confidence 34568999999999999999999987522100 001133444443333333 567889999999432
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
+...+..+...+|++++|+|+...+...++..+..+... +.. .+++++||+|+...
T Consensus 88 -----------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g~~---~iIvvvNK~D~~~~ 143 (409)
T CHL00071 88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-GVP---NIVVFLNKEDQVDD 143 (409)
T ss_pred -----------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---EEEEEEEccCCCCH
Confidence 223333334578999999999866777777777665543 321 37788999999854
No 163
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.48 E-value=4.7e-12 Score=105.36 Aligned_cols=87 Identities=24% Similarity=0.280 Sum_probs=55.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|.+|+|||||+|.|+|...... ... ..|.......+.+ ++..+.++||||+............++ ...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~-~~~-~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVA-AYE-FTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQV----IAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc-CCC-CccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence 799999999999999999998764211 111 1233333333344 678889999999765321111112222 234
Q ss_pred CCCccEEEEEeecC
Q 017924 101 KDGIHAFLVVFSVT 114 (363)
Q Consensus 101 ~~~~~~~l~v~~~~ 114 (363)
+..+|++++|+|++
T Consensus 75 ~~~ad~il~V~D~t 88 (233)
T cd01896 75 ARTADLILMVLDAT 88 (233)
T ss_pred hccCCEEEEEecCC
Confidence 56789999999876
No 164
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.48 E-value=4.4e-12 Score=101.75 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=91.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe--EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.+|+++|..|+|||||++.+++.. |... ...|+...+ ..+.. ++ ..+.++||.|... +..
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~-f~~~---~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~ 64 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGE-FDED---YIQTLGVNFMEKTISI-RGTEITFSIWDLGGQRE-----------FIN 64 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCC---CCCccceEEEEEEEEE-CCEEEEEEEEeCCCchh-----------HHH
Confidence 379999999999999999987553 2221 112222222 22333 33 4578999998543 223
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcch-hhHHHHhccCCCchHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE-KTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~-~~l~~~~~~~~~~~~~~~~ 173 (363)
....++.++|++++|+|++++-+-.+. .++..+....... .+ ++|.||+|+..... ...+..... ...+.
T Consensus 65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~~~~~~~~~~~~~~~-----~~~~a 136 (182)
T cd04128 65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLFADLPPEEQEEITKQ-----ARKYA 136 (182)
T ss_pred hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhccccccchhhhhhHHH-----HHHHH
Confidence 333456788999999999844343332 3444444432222 24 67899999853200 111111111 22233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...+..++ ..|++.+.++.++++.+...+
T Consensus 137 ~~~~~~~~------e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 137 KAMKAPLI------FCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 33332222 568888999999999876654
No 165
>PRK12735 elongation factor Tu; Reviewed
Probab=99.48 E-value=2.1e-12 Score=116.07 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=77.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc------ccc--------cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK------AFK--------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~------~~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (363)
.+..+|+++|+.++|||||+++|++.. .+. ......+.|.+.....+.. ++..++|+||||..
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~-- 86 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHA-- 86 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHH--
Confidence 456899999999999999999998621 100 0011234455444333333 56788999999953
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccc-eEEEEeCCCCCCc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLED 152 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~i~v~n~~D~~~~ 152 (363)
.+...+......+|++++|+|+...........+..+.. .+. + +++++||+|+...
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~gi----~~iivvvNK~Dl~~~ 143 (396)
T PRK12735 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV----PYIVVFLNKCDMVDD 143 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEEEecCCcch
Confidence 233333344557899999999975566665555555443 332 5 4467999998743
No 166
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.48 E-value=4e-12 Score=105.02 Aligned_cols=166 Identities=12% Similarity=0.066 Sum_probs=95.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|||..|+|||||++.+++.. |... ...|+...+ ..+.. + ...+.|+||+|... +.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~-F~~~---y~pTi~~~~~~~i~~-~~~~v~l~iwDTaG~e~-----------~~ 75 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDC-YPET---YVPTVFENYTAGLET-EEQRVELSLWDTSGSPY-----------YD 75 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCC-CCCC---cCCceeeeeEEEEEE-CCEEEEEEEEeCCCchh-----------hH
Confidence 34799999999999999999988553 3221 112221111 12222 3 34678999999432 22
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc---C-CCch
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---E-CPKP 168 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~---~-~~~~ 168 (363)
......+.++|++++|+|++++-+-.. ..++..+..... . .+++||.||.|+.... ..+.+.... . ..+.
T Consensus 76 ~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~~~~-~~~~~l~~~~~~~Vs~~e 151 (232)
T cd04174 76 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-S--TRILLIGCKTDLRTDL-STLMELSNQKQAPISYEQ 151 (232)
T ss_pred HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccccccc-chhhhhccccCCcCCHHH
Confidence 223345678999999999984444332 345555655433 2 2899999999975321 111110000 0 0011
Q ss_pred HHHHHHhcCCceEEecCCCcccccchh-HHHHHHHHHHHHH
Q 017924 169 LKEILQLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVI 208 (363)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~ 208 (363)
...+....+...++ .+|++.+. ++++++..+...+
T Consensus 152 ~~~~a~~~~~~~~~-----EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 152 GCALAKQLGAEVYL-----ECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred HHHHHHHcCCCEEE-----EccCCcCCcCHHHHHHHHHHHH
Confidence 33344444432222 56888886 7999988766554
No 167
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.48 E-value=1.7e-12 Score=102.20 Aligned_cols=154 Identities=21% Similarity=0.177 Sum_probs=86.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee-EeEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+|+|+|+.|+|||||++.+++... .... ..++.. ....+.. + ...+.++|+||... +....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~---~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 64 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEY---DPTIEDSYRKTIVV-DGETYTLDILDTAGQEE-----------FSAMR 64 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCc---CCChhHeEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 589999999999999999987652 2211 122222 1222222 3 24678999999543 11112
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.......+++++|++.++.-+..+ ..++..+..... ....|++++.||+|.........+ . ...+....
T Consensus 65 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~-~--------~~~~~~~~ 134 (160)
T cd00876 65 DLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLENERQVSKE-E--------GKALAKEW 134 (160)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccccceecHH-H--------HHHHHHHc
Confidence 223346799999999873322222 223333333332 122489999999998753101111 1 22222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
+..+ ...|+..+.++.++++.|..
T Consensus 135 ~~~~------~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 135 GCPF------IETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred CCcE------EEeccCCCCCHHHHHHHHHh
Confidence 2222 25567778899998887654
No 168
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.48 E-value=2.3e-12 Score=102.48 Aligned_cols=164 Identities=20% Similarity=0.182 Sum_probs=94.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||+..++... |... ...|+...+ ..+.. ++ ..+.++||+|.... ...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-f~~~---~~~Ti~~~~~~~~~~-~~~~v~l~i~Dt~G~~~~-----------~~~ 65 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-FPTD---YIPTVFDNFSANVSV-DGNTVNLGLWDTAGQEDY-----------NRL 65 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-CCCC---CCCcceeeeEEEEEE-CCEEEEEEEEECCCCccc-----------ccc
Confidence 489999999999999999998543 3221 112222111 12222 33 46789999996542 222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHh--ccCCCchHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL--GHECPKPLKEI 172 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~--~~~~~~~~~~~ 172 (363)
....+.+++++++|+|.+++-+-... .++..+..... + .+++||.||+|+.... ....... .....+....+
T Consensus 66 ~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~~~~-~~~~~~~~~~~v~~~~~~~~ 141 (176)
T cd04133 66 RPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP-N--VPIVLVGTKLDLRDDK-QYLADHPGASPITTAQGEEL 141 (176)
T ss_pred chhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeChhhccCh-hhhhhccCCCCCCHHHHHHH
Confidence 22345688999999999855554442 45555554432 3 3899999999985430 0000000 00000112233
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+...+. ++|++.+.++++++..+.+.+
T Consensus 142 a~~~~~~~~~-----E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 142 RKQIGAAAYI-----ECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHHcCCCEEE-----ECCCCcccCHHHHHHHHHHHH
Confidence 3333322122 678888999999998877654
No 169
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.48 E-value=3.9e-12 Score=101.43 Aligned_cols=162 Identities=17% Similarity=0.100 Sum_probs=89.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||+..+++.. |.. ....|+...+ ..+.. ++ ..+.++||+|.... ...
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~-f~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA-FPG---EYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDY-----------DRL 65 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCC---cCCCcceeeeEEEEEE-CCEEEEEEEEECCCchhh-----------hhh
Confidence 589999999999999999888543 221 1111221111 12222 33 46779999995431 122
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccC----CCchHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLK 170 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~----~~~~~~ 170 (363)
....+.+.|++++|+|.+++-+-... .++..+..... . .|+++|.||.|+... ....+...... ..+...
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~--~piilvgnK~Dl~~~-~~~~~~~~~~~~~~v~~~~~~ 141 (174)
T cd01871 66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD-KDTIEKLKEKKLTPITYPQGL 141 (174)
T ss_pred hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhccC-hhhHHHHhhccCCCCCHHHHH
Confidence 22345688999999999843332232 23444443322 2 389999999998532 11222111110 001122
Q ss_pred HHHHhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.+....+...+ ...|++++.++.++++.+..
T Consensus 142 ~~~~~~~~~~~-----~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 142 AMAKEIGAVKY-----LECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHHHHcCCcEE-----EEecccccCCHHHHHHHHHH
Confidence 23333332112 26788889999999887653
No 170
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.48 E-value=1.2e-12 Score=108.02 Aligned_cols=163 Identities=18% Similarity=0.188 Sum_probs=100.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..|++||-++||||||+|+|+.... ...... .|....+..+.+.+...+++.|.||+......+.-++-.|.+.+.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp---kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP---KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC---cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH
Confidence 3689999999999999999996543 122333 344666666666455669999999997644444445566666654
Q ss_pred ccCCCccEEEEEeecCCCC--CH-HHHHHHHHHHHHhcc-ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 99 MAKDGIHAFLVVFSVTNRF--SQ-EEETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~--~~-~~~~~l~~~~~~~~~-~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
++..++||+|++... +. .+...|..-.+.+.+ -..++.+||.||+|..+. -+.+ +.++..
T Consensus 274 ----R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea----e~~~--------l~~L~~ 337 (366)
T KOG1489|consen 274 ----RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA----EKNL--------LSSLAK 337 (366)
T ss_pred ----hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH----HHHH--------HHHHHH
Confidence 568999999998331 22 122222111122222 233489999999998533 1111 223333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
..... ++...+++.+.++.+|++.+.+
T Consensus 338 ~lq~~-----~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 338 RLQNP-----HVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HcCCC-----cEEEeeeccccchHHHHHHHhh
Confidence 33322 2235677788888888887654
No 171
>PLN03127 Elongation factor Tu; Provisional
Probab=99.47 E-value=1.5e-12 Score=118.02 Aligned_cols=121 Identities=15% Similarity=0.189 Sum_probs=79.7
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhcc------cc-cc-------cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCC
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGR------KA-FK-------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~------~~-~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 80 (363)
...+..+|+++|+.++|||||+++|++. .. +. ......+.|.+.....+.. ++..++|+||||+.
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~ 135 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHA 135 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCcc
Confidence 3456689999999999999999999743 10 00 0011144555554444444 56788999999975
Q ss_pred CCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccc-eEEEEeCCCCCCc
Q 017924 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLED 152 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~i~v~n~~D~~~~ 152 (363)
+. ...+.. ....+|++++|+|+.......++..+..+... +. + +++++||+|+...
T Consensus 136 ~f-------~~~~~~----g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-gi----p~iIvviNKiDlv~~ 192 (447)
T PLN03127 136 DY-------VKNMIT----GAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GV----PSLVVFLNKVDVVDD 192 (447)
T ss_pred ch-------HHHHHH----HHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC----CeEEEEEEeeccCCH
Confidence 41 122222 22358999999998756666676666665543 32 5 5788999999854
No 172
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.47 E-value=3.5e-12 Score=100.87 Aligned_cols=157 Identities=21% Similarity=0.182 Sum_probs=86.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+++|.+|+|||||++.+++... .. ....++...+ ..... + ...+.++||||.... ..+.
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~-~~---~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~--------~~~~-- 65 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF-VE---DYEPTKADSYRKKVVL-DGEDVQLNILDTAGQEDY--------AAIR-- 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-cc---ccCCcchhhEEEEEEE-CCEEEEEEEEECCChhhh--------hHHH--
Confidence 3799999999999999999986543 11 1111111111 11222 3 246789999995442 1122
Q ss_pred HhccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.......+++++++++++.-+-. -..++..+..... ....|+++|.||+|..........+ ...+...
T Consensus 66 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~---------~~~~~~~ 134 (164)
T cd04139 66 -DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEE---------AANLARQ 134 (164)
T ss_pred -HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHH---------HHHHHHH
Confidence 22334668899999876222111 1223333333311 1224899999999987520011111 1122222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
++..+ ...|+.++.++.++++.+.+.+
T Consensus 135 ~~~~~------~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 135 WGVPY------VETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred hCCeE------EEeeCCCCCCHHHHHHHHHHHH
Confidence 23222 3567888899999998876544
No 173
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.47 E-value=5.3e-12 Score=100.85 Aligned_cols=162 Identities=15% Similarity=0.100 Sum_probs=92.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.+++.. |.. ....|+...+ ..+.. ++ ..+.++||+|... +...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~-f~~---~~~~t~~~~~~~~~~~-~~~~~~l~iwDt~G~~~-----------~~~~ 65 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC-YPE---TYVPTVFENYTASFEI-DEQRIELSLWDTSGSPY-----------YDNV 65 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CCC---CcCCceEEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhhc
Confidence 589999999999999999998654 221 1112222211 12223 33 4577999999532 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc----cCCCchHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG----HECPKPLK 170 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~----~~~~~~~~ 170 (363)
....+.++|++++|+|++++-+-.. ..++..+..... . .++++|.||.|+.... ..+...-. .-..+...
T Consensus 66 ~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~--~~iilVgnK~DL~~~~-~~~~~~~~~~~~~v~~~e~~ 141 (178)
T cd04131 66 RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-N--TKVLLVGCKTDLRTDL-STLMELSHQRQAPVSYEQGC 141 (178)
T ss_pred chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-C--CCEEEEEEChhhhcCh-hHHHHHHhcCCCCCCHHHHH
Confidence 3345678899999999985544443 245555555443 2 3899999999975321 11110000 00011123
Q ss_pred HHHHhcCCceEEecCCCcccccchhH-HHHHHHHHHH
Q 017924 171 EILQLCDNRCVLFDNKTKDEAKGTEQ-VRQLLSLVNS 206 (363)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~ 206 (363)
++....+...++ .+|++++.+ +.+++..+-+
T Consensus 142 ~~a~~~~~~~~~-----E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 142 AIAKQLGAEIYL-----ECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred HHHHHhCCCEEE-----ECccCcCCcCHHHHHHHHHH
Confidence 344443332222 567888875 8888876655
No 174
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.47 E-value=6.2e-12 Score=101.88 Aligned_cols=164 Identities=17% Similarity=0.138 Sum_probs=92.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.++... |.. ....|....+. .+.. ++ ..+.++||+|... +...
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~-f~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~l 67 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNA-FPK---EYIPTVFDNYSAQTAV-DGRTVSLNLWDTAGQEE-----------YDRL 67 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC-CCc---CCCCceEeeeEEEEEE-CCEEEEEEEEECCCchh-----------hhhh
Confidence 699999999999999999987543 221 11223222111 1222 33 4678999999543 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccC----CCchHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLK 170 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~----~~~~~~ 170 (363)
....+.++|++++|+|++++-+-... .++..+.... .. .|++||.||.|+.... ...+...... ..+...
T Consensus 68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~~--~piilvgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~~ 143 (191)
T cd01875 68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PN--VPILLVGTKKDLRNDA-DTLKKLKEQGQAPITPQQGG 143 (191)
T ss_pred hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEEeChhhhcCh-hhHHHHhhccCCCCCHHHHH
Confidence 33445688999999999844333332 1333333322 22 3899999999985431 1111111100 001122
Q ss_pred HHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+....+...+ ..+|++.+.++++++..+.+.+
T Consensus 144 ~~a~~~~~~~~-----~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 144 ALAKQIHAVKY-----LECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred HHHHHcCCcEE-----EEeCCCCCCCHHHHHHHHHHHH
Confidence 23333332112 2567888899999998877655
No 175
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.47 E-value=3.8e-12 Score=101.85 Aligned_cols=162 Identities=17% Similarity=0.138 Sum_probs=88.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|||||||++.+++... .. ....|.... ...+.+ ++ ..+.++||+|.... ...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF-PE---VYVPTVFENYVADIEV-DGKQVELALWDTAGQEDY-----------DRL 65 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-CC---CCCCccccceEEEEEE-CCEEEEEEEEeCCCchhh-----------hhc
Confidence 5899999999999999999986542 11 111122111 122233 33 35789999996432 111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccC----C-CchH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----C-PKPL 169 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~----~-~~~~ 169 (363)
....+.+.|+++++++++++-+-... .++..+..... . .|+++|.||+|+... ......+... . ....
T Consensus 66 ~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~i~~~~~~~v~~~~~ 140 (175)
T cd01870 66 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEG 140 (175)
T ss_pred cccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhcccC--hhhhhhhhhccCCCccHHHH
Confidence 22344678999999998733221121 23333333222 2 389999999997643 2221111110 0 0011
Q ss_pred HHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
..+...++...+ ..+|+..+.++.++++.+...
T Consensus 141 ~~~~~~~~~~~~-----~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 141 RDMANKIGAFGY-----MECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHHcCCcEE-----EEeccccCcCHHHHHHHHHHH
Confidence 222222222112 256888889999999887643
No 176
>PLN03108 Rab family protein; Provisional
Probab=99.47 E-value=2.1e-12 Score=106.15 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=86.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|.+|+|||||++.|++... .. ....++..+.....+.+ ++ ..+.++||+|... +....
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~-~~-~~~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~-----------~~~~~ 72 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRF-QP-VHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQES-----------FRSIT 72 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CC-CCCCCccceEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHHH
Confidence 6999999999999999999986643 11 11111111111122233 33 3577999999432 11112
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..+|++++|+|.++.-+-... .++..+...... ..++++|.||+|+........+ . ...+....
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~~~~~~~-~--------~~~~~~~~ 141 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAHRRAVSTE-E--------GEQFAKEH 141 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccccCCCHH-H--------HHHHHHHc
Confidence 2233568999999998733222222 233333333322 2389999999998643101111 1 11222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
+..++ ..|+..+.++.+++..+...
T Consensus 142 ~~~~~------e~Sa~~~~~v~e~f~~l~~~ 166 (210)
T PLN03108 142 GLIFM------EASAKTAQNVEEAFIKTAAK 166 (210)
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHH
Confidence 22222 55677788899887665443
No 177
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.47 E-value=2.5e-12 Score=106.42 Aligned_cols=161 Identities=21% Similarity=0.117 Sum_probs=88.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|..|+|||||++.+++.... ......+...+.....+.+. ....+.++||+|... .+...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~----------~~~~~-- 67 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM----------WTEDS-- 67 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch----------HHHhH--
Confidence 37999999999999999999754321 01111111101112222221 235678999999651 11111
Q ss_pred ccCC-CccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 99 MAKD-GIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 99 ~~~~-~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.+. ++|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+........+ . ...+....
T Consensus 68 -~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~~~v~~~-~--------~~~~a~~~ 136 (221)
T cd04148 68 -CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARSREVSVQ-E--------GRACAVVF 136 (221)
T ss_pred -HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhccccceecHH-H--------HHHHHHHc
Confidence 122 7899999999983322221 223333333211 112389999999998644101111 1 11222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+..++ ..|+..+.++.++++.+...+..
T Consensus 137 ~~~~~------e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 137 DCKFI------ETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred CCeEE------EecCCCCCCHHHHHHHHHHHHHh
Confidence 32222 56788889999999988776643
No 178
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.47 E-value=3.5e-12 Score=100.16 Aligned_cols=154 Identities=19% Similarity=0.186 Sum_probs=83.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.|++.. +..... .+.+.......+.. ++ ..+.++|+||..... .+...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~--------~~~~~- 69 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYK-PGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYR--------AIRRL- 69 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCC-CCceeeeeEEEEEE-CCEEEEEEEEECCCcccch--------HHHHH-
Confidence 689999999999999999999876 332222 22232332222334 55 677899999954421 11111
Q ss_pred hccCCCccEEEEEeecCCC---CCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 98 GMAKDGIHAFLVVFSVTNR---FSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.....+.+++++|.... +.......+..+...... ..|+++++||+|.... .... . ....+.
T Consensus 70 --~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~--~~~~-~--------~~~~~~ 134 (161)
T TIGR00231 70 --YYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA--KLKT-H--------VAFLFA 134 (161)
T ss_pred --HHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc--hhhH-H--------HHHHHh
Confidence 11234555555554412 111222333333333321 2389999999999765 2111 1 222222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
..+... ....++..+.++.++++.|.
T Consensus 135 ~~~~~~-----~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 135 KLNGEP-----IIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred hccCCc-----eEEeecCCCCCHHHHHHHhh
Confidence 222211 23567777888888887754
No 179
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.47 E-value=7.2e-12 Score=100.13 Aligned_cols=163 Identities=18% Similarity=0.142 Sum_probs=89.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.+++... . .....+....+ ..+.. ++ ..+.++||+|..... ..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~-~---~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~ 64 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF-P---EEYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYD-----------RL 64 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-C---CCCCCceeeeeEEEEEE-CCEEEEEEEEeCCCccccc-----------cc
Confidence 3799999999999999999986543 1 11112222111 12223 33 346789999965421 11
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHh---ccCCC-chHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL---GHECP-KPLK 170 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~---~~~~~-~~~~ 170 (363)
....+...|++++|++.+++-+-... .++..+... ... .|+++|.||+|+.... ....... ..... ....
T Consensus 65 ~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~--~piivv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~ 140 (174)
T cd04135 65 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APN--VPYLLVGTQIDLRDDP-KTLARLNDMKEKPVTVEQGQ 140 (174)
T ss_pred ccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCC--CCEEEEeEchhhhcCh-hhHHHHhhccCCCCCHHHHH
Confidence 12345678999999998733332222 234444433 222 3899999999976431 1111110 00000 0112
Q ss_pred HHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
.+....+...++ ..|+.++.+++++++.+-..
T Consensus 141 ~~~~~~~~~~~~-----e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 141 KLAKEIGAHCYV-----ECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHHHHcCCCEEE-----EecCCcCCCHHHHHHHHHHH
Confidence 233333322222 56888899999998876543
No 180
>PRK12736 elongation factor Tu; Reviewed
Probab=99.46 E-value=2.9e-12 Score=115.08 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=79.5
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccc--------------cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
+.+..+|+++|+.++|||||+++|++...-. ......+.|.+.....+.. ++..++++||||..
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~- 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHA- 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHH-
Confidence 4556899999999999999999998632100 0011234455444333333 56788999999943
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
.+...+......+|++++|+|+...........+..+... +.. .+++++||+|+...
T Consensus 87 ----------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g~~---~~IvviNK~D~~~~ 143 (394)
T PRK12736 87 ----------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-GVP---YLVVFLNKVDLVDD 143 (394)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CCC---EEEEEEEecCCcch
Confidence 2223333344578999999999766666666666665543 321 36788999998743
No 181
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.46 E-value=1.4e-12 Score=103.09 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=85.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce-eeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|.+|+|||||++.+++... ... ...|. ......... ++ ..+.++||+|..... .+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~-~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~~~-- 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTF-IEK---YDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA--------SMR-- 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCC---CCCchhheEEEEEEE-CCEEEEEEEEECCCccccc--------chH--
Confidence 6899999999999999988885543 111 11121 111222333 33 356789999964421 111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...+.+.|++++|+|.++.-+-.+ ..++..+..... ....|+++|.||+|+... ....... ...+...
T Consensus 67 -~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~--~~~~~~~-------~~~~~~~ 135 (163)
T cd04176 67 -DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESE--REVSSAE-------GRALAEE 135 (163)
T ss_pred -HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc--CccCHHH-------HHHHHHH
Confidence 122346899999999873332222 223334443321 122389999999997543 1111000 1112222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.+..+ ...|++.+.++.+++..+..
T Consensus 136 ~~~~~------~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 136 WGCPF------METSAKSKTMVNELFAEIVR 160 (163)
T ss_pred hCCEE------EEecCCCCCCHHHHHHHHHH
Confidence 22222 25677788899999887654
No 182
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.46 E-value=3.3e-12 Score=102.70 Aligned_cols=160 Identities=19% Similarity=0.208 Sum_probs=88.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.+++... .... .+.+.......... . ...+.++||||... +....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~~~~--~~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-VESY--YPTIENTFSKIIRY-KGQDYHLEIVDTAGQDE-----------YSILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-cccc--CcchhhhEEEEEEE-CCEEEEEEEEECCChHh-----------hHHHH
Confidence 5899999999999999999986543 1111 11111111222222 3 24567999999543 11122
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.......++++++++.++.-+-.. ...+..+....+ ....++++|.||+|.... ..+... . ...+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~--~~~~~~--~-----~~~~~~~~ 136 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHTQ--RQVSTE--E-----GKELAESW 136 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhhc--CccCHH--H-----HHHHHHHc
Confidence 223346789999999873322222 222233333222 122389999999998643 111100 0 11222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+..+ ...|+..+.++.+++..+.+.+..
T Consensus 137 ~~~~------~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 137 GAAF------LESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred CCeE------EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3222 245777888999999888776644
No 183
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.46 E-value=7.9e-12 Score=102.77 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=89.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|||..|+|||||++.+++.. |... ...|+...+ ..+.. ++ ..+.+|||+|... +...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~-f~~~---y~pTi~~~~~~~~~~-~~~~v~L~iwDt~G~e~-----------~~~l 65 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA-YPGS---YVPTVFENYTASFEI-DKRRIELNMWDTSGSSY-----------YDNV 65 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCCc---cCCccccceEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence 589999999999999999998654 2211 111221111 12223 33 4577899999532 2233
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccC----CCchHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLK 170 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~----~~~~~~ 170 (363)
...++...|++++|+|+++.-+-... .+...+...+ .. .|++||.||.|+.... ..+....... ..+...
T Consensus 66 ~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~--~piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~ 141 (222)
T cd04173 66 RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PN--AKVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGT 141 (222)
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEEECcccccch-hhhhhhhhccCCccCHHHHH
Confidence 33456789999999999844332222 2222232222 22 3899999999986431 1111110000 001122
Q ss_pred HHHHhcCCceEEecCCCcccccchhH-HHHHHHHHHHH
Q 017924 171 EILQLCDNRCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV 207 (363)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~ 207 (363)
.+....+...++ ++|+..+.+ +++++......
T Consensus 142 ~~ak~~~~~~y~-----E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 142 VLAKQVGAVSYV-----ECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred HHHHHcCCCEEE-----EcCCCcCCcCHHHHHHHHHHH
Confidence 334444432222 567776664 88888765553
No 184
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.46 E-value=5.3e-12 Score=93.75 Aligned_cols=159 Identities=19% Similarity=0.216 Sum_probs=101.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
+.+.+|.|+|.+||||||+++.|.|... .....|...++....+ ++..++++|.-|. +.++.+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq-----------~~lr~~ 76 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGGQ-----------KTLRSY 76 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCCc-----------chhHHH
Confidence 4568999999999999999999998874 2223344556666666 7889999999983 456777
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccc--cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
+..++...|++++|+|.+++..-.+ ....+..++..+ +..+++++.||.|.... -..++.... -.+..+..
T Consensus 77 W~nYfestdglIwvvDssD~~r~~e--~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~~~~i~~~---~~L~~l~k 149 (185)
T KOG0073|consen 77 WKNYFESTDGLIWVVDSSDRMRMQE--CKQELTELLVEERLAGAPLLVLANKQDLPGA--LSLEEISKA---LDLEELAK 149 (185)
T ss_pred HHHhhhccCeEEEEEECchHHHHHH--HHHHHHHHHhhhhhcCCceEEEEecCcCccc--cCHHHHHHh---hCHHHhcc
Confidence 7778888999999999864443222 222233332211 12389999999998754 333332211 01455555
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
.++.+.+- .++.++.++.+-++++-
T Consensus 150 s~~~~l~~------cs~~tge~l~~gidWL~ 174 (185)
T KOG0073|consen 150 SHHWRLVK------CSAVTGEDLLEGIDWLC 174 (185)
T ss_pred ccCceEEE------EeccccccHHHHHHHHH
Confidence 55555443 34445555555555443
No 185
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.45 E-value=1.3e-12 Score=119.52 Aligned_cols=168 Identities=11% Similarity=0.076 Sum_probs=98.2
Q ss_pred CccCCCCCCccEEEEEcCCCCchHHHHHHhhccccccc--------------cc-----------------CCCCCceee
Q 017924 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SA-----------------GSSGVTKTC 58 (363)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~--------------~~-----------------~~~~~t~~~ 58 (363)
|...+...+..+|+|+|+.++|||||++.|+....... +. ...+.|++.
T Consensus 18 ~~~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~ 97 (474)
T PRK05124 18 YLHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDV 97 (474)
T ss_pred HHhhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEe
Confidence 44555556778999999999999999999874431100 00 013345555
Q ss_pred EeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcccccc
Q 017924 59 EMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138 (363)
Q Consensus 59 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 138 (363)
....+.+ ++..++|+||||..+ +...+......+|++++|+|+...........+..+.. ++. .
T Consensus 98 ~~~~~~~-~~~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---~ 161 (474)
T PRK05124 98 AYRYFST-EKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---K 161 (474)
T ss_pred eEEEecc-CCcEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---C
Confidence 5555555 677899999999432 22222223357899999999875554444444333332 332 2
Q ss_pred ceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHH
Q 017924 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQL 200 (363)
Q Consensus 139 ~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 200 (363)
++++++||+|....+...++..... +..++..++. .........|+..+.++..+
T Consensus 162 ~iIvvvNKiD~~~~~~~~~~~i~~~-----l~~~~~~~~~--~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 162 HLVVAVNKMDLVDYSEEVFERIRED-----YLTFAEQLPG--NLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ceEEEEEeeccccchhHHHHHHHHH-----HHHHHHhcCC--CCCceEEEEEeecCCCcccc
Confidence 7889999999875422344444444 4444443321 00111234566666666543
No 186
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.45 E-value=3.4e-12 Score=106.98 Aligned_cols=159 Identities=20% Similarity=0.215 Sum_probs=89.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee-eEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.+++... .. ....|+. .....+.. ++ ..+.|+||+|.... ..+..
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f-~~---~y~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~--------~~~~~- 66 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF-EE---QYTPTIEDFHRKLYSI-RGEVYQLDILDTSGNHPF--------PAMRR- 66 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCC-CC---CCCCChhHhEEEEEEE-CCEEEEEEEEECCCChhh--------hHHHH-
Confidence 3799999999999999999985432 21 1112221 11222233 33 46789999996542 11221
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhc-------cccccceEEEEeCCCCCCcchhhHHHHhccCCCch
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-------KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP 168 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~-------~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~ 168 (363)
..+...|++++|+|+++.-+-.+ ..++..+..... .....|+++|.||+|+........++
T Consensus 67 --~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~e--------- 135 (247)
T cd04143 67 --LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE--------- 135 (247)
T ss_pred --HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHH---------
Confidence 23346799999999984333222 223334433210 11224899999999986421011111
Q ss_pred HHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++.......+ ...|+..+.+++++++.|..+.
T Consensus 136 i~~~~~~~~~~~~-----~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 136 VEQLVGGDENCAY-----FEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHHHHHhcCCCEE-----EEEeCCCCCCHHHHHHHHHHHh
Confidence 2222221111111 2567888899999999887755
No 187
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.45 E-value=3.8e-12 Score=101.12 Aligned_cols=156 Identities=22% Similarity=0.191 Sum_probs=86.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|.+|||||||++.+++... .... ..|+... .....+ ++ ..+.++||+|..... .+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~-~~~~---~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~--------~~~-- 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF-IESY---DPTIEDSYRKQVEI-DGRQCDLEILDTAGTEQFT--------AMR-- 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-Cccc---CCcchheEEEEEEE-CCEEEEEEEEeCCCcccch--------hhh--
Confidence 5899999999999999999985543 2111 1122111 122223 32 466799999965421 111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...+...+++++|++.++.-+-.. ..+...+..... ....|++++.||.|.........++ ...+...
T Consensus 67 -~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~---------~~~~~~~ 135 (168)
T cd04177 67 -ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDDRQVSRED---------GVSLSQQ 135 (168)
T ss_pred -HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhccccCccCHHH---------HHHHHHH
Confidence 222346789999999873322222 223333433322 1124899999999986431011111 1112222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.+...+ ...|++.+.++.++++.+..
T Consensus 136 ~~~~~~-----~~~SA~~~~~i~~~f~~i~~ 161 (168)
T cd04177 136 WGNVPF-----YETSARKRTNVDEVFIDLVR 161 (168)
T ss_pred cCCceE-----EEeeCCCCCCHHHHHHHHHH
Confidence 221111 24678888899998887654
No 188
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.44 E-value=3.7e-12 Score=102.92 Aligned_cols=164 Identities=16% Similarity=0.119 Sum_probs=89.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|.+|+|||||++.|++... .. ....++... ...... ++ ..+.++||+|...... +.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~--------~~-- 66 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEF-PE---EYHPTVFENYVTDCRV-DGKPVQLALWDTAGQEEYER--------LR-- 66 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-Cc---ccCCcccceEEEEEEE-CCEEEEEEEEECCCChhccc--------cc--
Confidence 5899999999999999999974332 11 111122111 112222 33 3467999999654211 11
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc-CC-CchHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH-EC-PKPLKEI 172 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~-~~-~~~~~~~ 172 (363)
...+..++++++++++++.-+-... .++..+..... + .|+++|.||+|+.... ...+..... .. ......+
T Consensus 67 -~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~--~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 141 (187)
T cd04129 67 -PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-N--VPVILVGLKKDLRQDA-VAKEEYRTQRFVPIQQGKRV 141 (187)
T ss_pred -hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhhhCc-ccccccccCCcCCHHHHHHH
Confidence 1133577999999998733222222 34455544333 2 3999999999975321 011000000 00 0011222
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+...+ ..+|+.++.+++++++.+.+.+
T Consensus 142 ~~~~~~~~~-----~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 142 AKEIGAKKY-----MECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred HHHhCCcEE-----EEccCCCCCCHHHHHHHHHHHH
Confidence 333332122 2568888999999999887654
No 189
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.44 E-value=3.1e-12 Score=115.28 Aligned_cols=168 Identities=13% Similarity=0.140 Sum_probs=97.7
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc-cccccCCCCCceeeEeEEEEe--------------e-----------CCcE
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVL--------------K-----------DGQV 70 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~-~~~~~~~~~~t~~~~~~~~~~--------------~-----------~~~~ 70 (363)
.+..+|+++|+.|+|||||+.+|+|... +.......+.|....+....+ . ....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 4558999999999999999999987521 111111223344332211111 0 0257
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCC-CHHHHHHHHHHHHHhccccccceEEEEeCCCC
Q 017924 71 VNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (363)
Q Consensus 71 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~ 149 (363)
++|+||||.. .+...+......+|++++|+|+++.. .......+..+.. .+. .++++|+||+|+
T Consensus 87 i~liDtPG~~-----------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~Dl 151 (411)
T PRK04000 87 VSFVDAPGHE-----------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKIDL 151 (411)
T ss_pred EEEEECCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEeecc
Confidence 8999999942 23333333344679999999998554 4444555554433 232 268899999999
Q ss_pred CCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 150 LEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
... ..+...... +..++...... .......|+..+.++.+|++.|...+.
T Consensus 152 ~~~--~~~~~~~~~-----i~~~l~~~~~~---~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 152 VSK--ERALENYEQ-----IKEFVKGTVAE---NAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred ccc--hhHHHHHHH-----HHHHhccccCC---CCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 765 333222222 33232211000 011235688889999999998887653
No 190
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.1e-12 Score=114.51 Aligned_cols=133 Identities=16% Similarity=0.140 Sum_probs=86.7
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+..|+|+|++|+|||||+|+|+..+. +.+++.+.|+++-+......+|..++++||.|+... +++.+...=..
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~dr--sIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~--~~~~iE~~gI~ 340 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDR--SIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREE--SNDGIEALGIE 340 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCc--eEeCCCCCcchhhheeEeecCCeEEEEEeccccccc--cCChhHHHhHH
Confidence 35668999999999999999999998877 334555556655554443349999999999999872 22222222222
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHh-cccc------ccceEEEEeCCCCCCc
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF-GKNV------FDYMIVVFTGGDDLED 152 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~-~~~~------~~~~i~v~n~~D~~~~ 152 (363)
.......+.|++++|+|+....+..+....+.+...- +-.+ .++++++.||.|+...
T Consensus 341 rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 341 RARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 2333445789999999985344444444333333221 1111 2578889999998755
No 191
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.44 E-value=2.3e-12 Score=116.21 Aligned_cols=166 Identities=13% Similarity=0.157 Sum_probs=96.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccccccc-ccCCCCCceeeEeEEEE--------------e-----------eCCcEE
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTV--------------L-----------KDGQVV 71 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~-~~~~~~~t~~~~~~~~~--------------~-----------~~~~~~ 71 (363)
+..+|+++|..++|||||+++|++...... .....+.|....+..+. . ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 457999999999999999999987532100 01112223322211110 0 013578
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCC-CHHHHHHHHHHHHHhccccccceEEEEeCCCCC
Q 017924 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (363)
Q Consensus 72 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~ 150 (363)
+++||||..+ +...+......+|++++|+|++... .......+..+. .++. .++++++||+|+.
T Consensus 83 ~liDtPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~gi---~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 83 SFVDAPGHET-----------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-IIGI---KNIVIVQNKIDLV 147 (406)
T ss_pred EEEECCCHHH-----------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-HcCC---CeEEEEEEccccC
Confidence 9999999432 2233333334679999999998544 344444454443 3332 2689999999988
Q ss_pred CcchhhHHHHhccCCCchHHHHHHhcC-CceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 151 EDHEKTLEDFLGHECPKPLKEILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.. ....+.... +..++.... ..+ .....|+..+.++.+|++.|...+.
T Consensus 148 ~~--~~~~~~~~~-----i~~~l~~~~~~~~----~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 148 SK--EKALENYEE-----IKEFVKGTVAENA----PIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred CH--HHHHHHHHH-----HHhhhhhcccCCC----eEEEEECCCCCChHHHHHHHHHhCC
Confidence 54 333222222 222222110 001 1235688888999999999887654
No 192
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.44 E-value=2.2e-12 Score=102.11 Aligned_cols=157 Identities=17% Similarity=0.230 Sum_probs=83.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+|+|+|..|+|||||++.+++.. |.. ....+ +.......... ++. .+.++||||...... .....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~-~~~-~~~~t-~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~------~~~~~--- 67 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR-FIG-EYDPN-LESLYSRQVTI-DGEQVSLEILDTAGQQQADT------EQLER--- 67 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc-ccc-ccCCC-hHHhceEEEEE-CCEEEEEEEEECCCCccccc------chHHH---
Confidence 58999999999999999987533 211 11111 11111122223 333 567999999763100 01111
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHH-HHhccCCCchHHHHHHhc
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE-DFLGHECPKPLKEILQLC 176 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~-~~~~~~~~~~~~~~~~~~ 176 (363)
.+..+|++++|+|+++.-+-.. ..++..+..........|+++|.||+|+... ..+. +. ...+....
T Consensus 68 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~--------~~~~~~~~ 136 (165)
T cd04146 68 -SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY--RQVSTEE--------GEKLASEL 136 (165)
T ss_pred -HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh--CccCHHH--------HHHHHHHc
Confidence 2235799999999973322222 2234444443210112389999999997533 1111 11 11222333
Q ss_pred CCceEEecCCCcccccch-hHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGT-EQVRQLLSLVNSV 207 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~ 207 (363)
+..++ ..|+..+ .++.+++..+.+.
T Consensus 137 ~~~~~------e~Sa~~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 137 GCLFF------EVSAAEDYDGVHSVFHELCRE 162 (165)
T ss_pred CCEEE------EeCCCCCchhHHHHHHHHHHH
Confidence 32222 4566666 4888888877654
No 193
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.44 E-value=1.8e-11 Score=99.23 Aligned_cols=170 Identities=17% Similarity=0.134 Sum_probs=94.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee--eEeEEEEee------CCcEEEEEeCCCCCCCCCChHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLK------DGQVVNVIDTPGLFDLSAGSEFVGK 91 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~------~~~~~~l~DtpG~~~~~~~~~~~~~ 91 (363)
.+|+|+|.+|+|||||++.+++... ... ...|+. .....+.+. ....+.++||+|...
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f-~~~---~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~---------- 66 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQV-LGR---PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES---------- 66 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCC---CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh----------
Confidence 3799999999999999999986543 211 112222 122222221 124678999999543
Q ss_pred HHHHHHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhc-----------------cccccceEEEEeCCCCCCcc
Q 017924 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFG-----------------KNVFDYMIVVFTGGDDLEDH 153 (363)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~-----------------~~~~~~~i~v~n~~D~~~~~ 153 (363)
+.......+.++|++++|+|++++-+-... .++..+..... .....|++||.||+|+....
T Consensus 67 -~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 67 -VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred -HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 222333456689999999999855444333 34444443210 01123899999999986431
Q ss_pred hhhHHHHhccCCCchHHHHHHhcCCceEEecCCCccc-ccchhHHHHHHHHHHHHHH
Q 017924 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDE-AKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~ 209 (363)
...-+..+.. .+.+...++...+..+.....+ +....+...|...++.+++
T Consensus 146 ~~~~~~~~~~-----~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (202)
T cd04102 146 ESSGNLVLTA-----RGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIE 197 (202)
T ss_pred ccchHHHhhH-----hhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHH
Confidence 0111122222 4455666777766665442222 1222344455555555543
No 194
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=5.5e-12 Score=91.86 Aligned_cols=155 Identities=18% Similarity=0.242 Sum_probs=101.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|++||..|+|||.|++.++ +..|..+.. .++.++..+..+.. ++ ..+.+|||.| .+.++...
T Consensus 8 fkivlvgnagvgktclvrrft-qglfppgqg-atigvdfmiktvev-~gekiklqiwdtag-----------qerfrsit 73 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFT-QGLFPPGQG-ATIGVDFMIKTVEV-NGEKIKLQIWDTAG-----------QERFRSIT 73 (213)
T ss_pred EEEEEEccCCcCcchhhhhhh-ccCCCCCCC-ceeeeeEEEEEEEE-CCeEEEEEEeeccc-----------hHHHHHHH
Confidence 689999999999999999998 555543221 22344556666666 44 3567999999 34566666
Q ss_pred hccCCCccEEEEEeecCCCCC-HHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...++.+|+++++.|++..-+ .---.++..+.......+ --|+|.||.|+... ..+.+.+ .+-....
T Consensus 74 qsyyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr--revp~qi--------geefs~~ 141 (213)
T KOG0095|consen 74 QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR--REVPQQI--------GEEFSEA 141 (213)
T ss_pred HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh--hhhhHHH--------HHHHHHh
Confidence 677788899999999873222 233457777777655443 34577899998754 3333222 2222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
...|++ .+|+++..+++.|+..+.
T Consensus 142 qdmyfl-----etsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 142 QDMYFL-----ETSAKEADNVEKLFLDLA 165 (213)
T ss_pred hhhhhh-----hhcccchhhHHHHHHHHH
Confidence 444554 667777788888876543
No 195
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.43 E-value=3.8e-12 Score=101.59 Aligned_cols=161 Identities=18% Similarity=0.130 Sum_probs=88.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||++.+.+.. |.. ....|....+ ..... ++ ..+.++||+|.... ...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~-~~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~ 64 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG-YPT---EYVPTAFDNFSVVVLV-DGKPVRLQLCDTAGQDEF-----------DKL 64 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCC---CCCCceeeeeeEEEEE-CCEEEEEEEEECCCChhh-----------ccc
Confidence 479999999999999999997543 222 1122221111 12223 33 46678999996432 112
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCC----CchHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC----PKPLK 170 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~----~~~~~ 170 (363)
....+.++|++++|+|.+++-+-.. ..++..+..... + .+++++.||+|+.... ..+..+..... .+...
T Consensus 65 ~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~ 140 (173)
T cd04130 65 RPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP-K--APIILVGTQADLRTDV-NVLIQLARYGEKPVSQSRAK 140 (173)
T ss_pred cccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhhccCh-hHHHHHhhcCCCCcCHHHHH
Confidence 2234568899999999874433222 234444443222 2 3899999999986431 11111111000 00122
Q ss_pred HHHHhcCCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
.+....+...+ ...|++.+.+++++++.+-
T Consensus 141 ~~a~~~~~~~~-----~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 141 ALAEKIGACEY-----IECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHHhCCCeE-----EEEeCCCCCCHHHHHHHHH
Confidence 22333232122 2578888899999987653
No 196
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.43 E-value=2.7e-12 Score=108.70 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=73.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhccccccc--ccC------------------CCCCceeeEeEEEEeeCCcEEEEEeCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKA--SAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~--~~~------------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (363)
.+|+|+|+.|+|||||+++|+....... +.. ....+.......+.+ ++..++++||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCCc
Confidence 6899999999999999999974321000 000 012223333445555 7889999999996
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
.+. ..... .....+|++++|+|++..+.......++.+.. .+ .|+++++||+|....
T Consensus 82 ~df-------~~~~~----~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~-~~----~P~iivvNK~D~~~a 138 (267)
T cd04169 82 EDF-------SEDTY----RTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL-RG----IPIITFINKLDREGR 138 (267)
T ss_pred hHH-------HHHHH----HHHHHCCEEEEEEECCCCccHHHHHHHHHHHh-cC----CCEEEEEECCccCCC
Confidence 542 11122 22346799999999975565555444444332 22 289999999997654
No 197
>PRK00049 elongation factor Tu; Reviewed
Probab=99.43 E-value=5.5e-12 Score=113.30 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=79.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccc--------------cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (363)
.+..+|+++|+.++|||||+++|++...-. ......+.|.......+.. ++..++++||||..
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~-- 86 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHA-- 86 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHH--
Confidence 455899999999999999999998632100 0011234455444333333 56788999999953
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceE-EEEeCCCCCCc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI-VVFTGGDDLED 152 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i-~v~n~~D~~~~ 152 (363)
.+...+......+|++++|+|+.......+...+..+... +. +.+ +++||+|+...
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g~----p~iiVvvNK~D~~~~ 143 (396)
T PRK00049 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFLNKCDMVDD 143 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-CC----CEEEEEEeecCCcch
Confidence 2333333445678999999999766667777777665543 32 555 68999999743
No 198
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.43 E-value=6.5e-12 Score=105.17 Aligned_cols=168 Identities=20% Similarity=0.203 Sum_probs=103.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCce-eeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
-|++||-++|||||||++++.... .......|+ ......+....+..+++.|.||+..-.....-++-++.+.+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP---KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE- 236 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP---KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIE- 236 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC---cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHH-
Confidence 589999999999999999986542 133333333 333444443356778999999987644333445666777765
Q ss_pred cCCCccEEEEEeecCCCCC----HHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 100 AKDGIHAFLVVFSVTNRFS----QEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~----~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
+..++++|+|++ ... ..+. .+...+..+...=..++.+||+||+|.... .+.++.+.+. +..
T Consensus 237 ---Rt~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-~e~~~~~~~~--------l~~ 303 (369)
T COG0536 237 ---RTRVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-EEELEELKKA--------LAE 303 (369)
T ss_pred ---hhheeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC-HHHHHHHHHH--------HHH
Confidence 447899999987 322 2332 233334433222233489999999995543 1444433333 222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.++.....+ .|+.++.++..|+..+..++..
T Consensus 304 ~~~~~~~~~-----ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 304 ALGWEVFYL-----ISALTREGLDELLRALAELLEE 334 (369)
T ss_pred hcCCCccee-----eehhcccCHHHHHHHHHHHHHH
Confidence 222222221 4777788999999988887765
No 199
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.42 E-value=2.3e-12 Score=116.09 Aligned_cols=156 Identities=13% Similarity=0.100 Sum_probs=91.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhccccccc-------------------------------ccCCCCCceeeEeEEEEeeCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKA-------------------------------SAGSSGVTKTCEMKTTVLKDG 68 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~ 68 (363)
.+|+++|+.++|||||++.|+....... .....+.|.+.....+.+ ++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 4899999999999999999863321000 001233455555555555 67
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCC
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D 148 (363)
..++|+||||..+ +...+......+|++++|+|+...+.......+..+.. ++. .++++++||+|
T Consensus 80 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~-~~~---~~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASL-LGI---RHVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHH-cCC---CcEEEEEEecc
Confidence 7899999999543 22222234457899999999875665555555444443 232 26889999999
Q ss_pred CCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHH
Q 017924 149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199 (363)
Q Consensus 149 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (363)
....+...+++.... +..++...+.... .....|+..+.++..
T Consensus 145 ~~~~~~~~~~~i~~~-----~~~~~~~~~~~~~---~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 145 LVDYDEEVFENIKKD-----YLAFAEQLGFRDV---TFIPLSALKGDNVVS 187 (406)
T ss_pred cccchHHHHHHHHHH-----HHHHHHHcCCCCc---cEEEeecccCCCCcc
Confidence 875422334444443 4444444332110 112446666655543
No 200
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=9.6e-12 Score=97.17 Aligned_cols=159 Identities=18% Similarity=0.198 Sum_probs=105.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|++||.+|+|||+|+-.+. .+.|.. ....++-++-....+.. ++ ..+.+|||.|.. .+...+
T Consensus 13 ~kvlliGDs~vGKt~~l~rf~-d~~f~~-~~~sTiGIDFk~kti~l-~g~~i~lQiWDtaGQe-----------rf~ti~ 78 (207)
T KOG0078|consen 13 FKLLLIGDSGVGKTCLLLRFS-DDSFNT-SFISTIGIDFKIKTIEL-DGKKIKLQIWDTAGQE-----------RFRTIT 78 (207)
T ss_pred EEEEEECCCCCchhHhhhhhh-hccCcC-CccceEEEEEEEEEEEe-CCeEEEEEEEEcccch-----------hHHHHH
Confidence 699999999999999999887 444332 22222333444444444 43 356799999943 444455
Q ss_pred hccCCCccEEEEEeecCCCCC-HHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
..++.+++++++|+|+++..+ .+...+++.+.++....+ +.+||.||+|+... ..+. .+.-..+....
T Consensus 79 ~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v--~~~LvGNK~D~~~~--R~V~-------~e~ge~lA~e~ 147 (207)
T KOG0078|consen 79 TAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDV--VKILVGNKCDLEEK--RQVS-------KERGEALAREY 147 (207)
T ss_pred HHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCC--cEEEeecccccccc--cccc-------HHHHHHHHHHh
Confidence 556678899999999984444 344568888888766555 89999999998753 1110 11133455555
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+..++ ++|++.+.++.+.+-.|.+.+.
T Consensus 148 G~~F~------EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 148 GIKFF------ETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred CCeEE------EccccCCCCHHHHHHHHHHHHH
Confidence 55555 5788888999988776665543
No 201
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.42 E-value=1.6e-12 Score=103.61 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=96.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+++|..|||||||++.|.........+ |....+..+.+ .+..+.++|..|-.. +...
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~p-----T~g~~~~~i~~-~~~~~~~~d~gG~~~-----------~~~~ 74 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIP-----TIGFNIEEIKY-KGYSLTIWDLGGQES-----------FRPL 74 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEE-----ESSEEEEEEEE-TTEEEEEEEESSSGG-----------GGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCc-----ccccccceeee-CcEEEEEEecccccc-----------cccc
Confidence 556899999999999999999998654322112 32333444455 788899999998432 3334
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccc--cccceEEEEeCCCCCCc-chhhHHHHhccCCCchHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~-~~~~l~~~~~~~~~~~~~~~~ 173 (363)
+...+..+++++||+|.++.-.-. ...+.+..++... ...|++|+.||.|.... ....+.+.+.. .. +
T Consensus 75 w~~y~~~~~~iIfVvDssd~~~l~--e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l------~~-l 145 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPERLQ--EAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGL------EK-L 145 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGGGHH--HHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTG------GG-T
T ss_pred ceeeccccceeEEEEecccceeec--ccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhh------hh-c
Confidence 445567889999999987221111 1122233333221 12499999999998654 11223333221 11 1
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
. ....+.++ ..++.++.++.+.+++|.+.
T Consensus 146 ~-~~~~~~v~----~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 146 K-NKRPWSVF----SCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp T-SSSCEEEE----EEBTTTTBTHHHHHHHHHHH
T ss_pred c-cCCceEEE----eeeccCCcCHHHHHHHHHhc
Confidence 1 12333332 45777889999999987654
No 202
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.42 E-value=3.7e-12 Score=105.36 Aligned_cols=135 Identities=18% Similarity=0.212 Sum_probs=79.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcccc-----------------------------cccccCCCCCceeeEeEEEEeeCCcEE
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKA-----------------------------FKASAGSSGVTKTCEMKTTVLKDGQVV 71 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~-----------------------------~~~~~~~~~~t~~~~~~~~~~~~~~~~ 71 (363)
+|+|+|+.|+|||||+.+|+.... +.......+.|.+.....+.+ .+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 489999999999999999852211 000011233444455555556 78899
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC-------CCHHHHHHHHHHHHHhccccccceEEEE
Q 017924 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (363)
Q Consensus 72 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~i~v~ 144 (363)
+++||||..+ +...+......+|++++|+|++.. ........+..+. ..+. .++++++
T Consensus 80 ~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~iiivv 144 (219)
T cd01883 80 TILDAPGHRD-----------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGV---KQLIVAV 144 (219)
T ss_pred EEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCC---CeEEEEE
Confidence 9999999532 122222334568999999998742 1222333333332 2332 3788999
Q ss_pred eCCCCCCc--chhhHHHHhccCCCchHHHHHHhc
Q 017924 145 TGGDDLED--HEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 145 n~~D~~~~--~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
||+|+... +...++..+.. +...+...
T Consensus 145 NK~Dl~~~~~~~~~~~~i~~~-----l~~~l~~~ 173 (219)
T cd01883 145 NKMDDVTVNWSEERYDEIKKE-----LSPFLKKV 173 (219)
T ss_pred EccccccccccHHHHHHHHHH-----HHHHHHHc
Confidence 99998732 12334445444 55455443
No 203
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.41 E-value=5.1e-12 Score=115.82 Aligned_cols=44 Identities=18% Similarity=0.106 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcchhhHHHHhcc
Q 017924 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~~~l~~~~~~ 163 (363)
..++++.+.++.+.+.++... -++++ +||+|...- .||++|+..
T Consensus 152 ~~LSGG~r~Rv~LA~aL~~~p---DlLLLDEPTNHLD~~~i--~WLe~~L~~ 198 (530)
T COG0488 152 SSLSGGWRRRVALARALLEEP---DLLLLDEPTNHLDLESI--EWLEDYLKR 198 (530)
T ss_pred hhcCHHHHHHHHHHHHHhcCC---CEEEEcCCCcccCHHHH--HHHHHHHHh
Confidence 389999999999999998763 34444 899999877 889888876
No 204
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.41 E-value=8e-12 Score=97.85 Aligned_cols=152 Identities=18% Similarity=0.143 Sum_probs=85.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|.+|+|||||++.+++.. |...... +.......+.. ++ ..+.++||.|.... .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~-f~~~~~~---~~~~~~~~i~~-~~~~~~l~i~D~~g~~~~---------~----- 61 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGS-YVQLESP---EGGRFKKEVLV-DGQSHLLLIRDEGGAPDA---------Q----- 61 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCC-CCCCCCC---CccceEEEEEE-CCEEEEEEEEECCCCCch---------h-----
Confidence 379999999999999998766432 2211111 11111122333 44 35778999996430 1
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.+...|++++|+|.+++-+-.. ..++..+...... ...|+++|.||.|+.......+... ....+....
T Consensus 62 --~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~~~v~~~-------~~~~~~~~~ 131 (158)
T cd04103 62 --FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNI-SEIPLILVGTQDAISESNPRVIDDA-------RARQLCADM 131 (158)
T ss_pred --HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeeHHHhhhcCCcccCHH-------HHHHHHHHh
Confidence 1235799999999985544444 3445555444321 1238999999988642100111100 011222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
+...+ ..+|++.+.++.+++..+.
T Consensus 132 ~~~~~-----~e~SAk~~~~i~~~f~~~~ 155 (158)
T cd04103 132 KRCSY-----YETCATYGLNVERVFQEAA 155 (158)
T ss_pred CCCcE-----EEEecCCCCCHHHHHHHHH
Confidence 22122 2678888999999988764
No 205
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.41 E-value=3.7e-12 Score=121.39 Aligned_cols=160 Identities=11% Similarity=0.082 Sum_probs=93.3
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhccccccc--------------cc-----------------CCCCCceeeEeEEE
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SA-----------------GSSGVTKTCEMKTT 63 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~--------------~~-----------------~~~~~t~~~~~~~~ 63 (363)
+..+..+|+|+|+.++|||||++.|+....... +. -..+.|.+.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 445668999999999999999999985432110 00 01223444444444
Q ss_pred EeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE
Q 017924 64 VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (363)
Q Consensus 64 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v 143 (363)
.+ ++..++|+||||..+ +...+......+|++++|+|+...........+..+..+ +. .+++++
T Consensus 100 ~~-~~~~~~liDtPG~~~-----------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~---~~iivv 163 (632)
T PRK05506 100 AT-PKRKFIVADTPGHEQ-----------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GI---RHVVLA 163 (632)
T ss_pred cc-CCceEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CC---CeEEEE
Confidence 44 677889999999532 222222234578999999998755554444444444332 32 278899
Q ss_pred EeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHH
Q 017924 144 FTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVR 198 (363)
Q Consensus 144 ~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (363)
+||+|....+...++..... +..++...+... ......|+..+.++.
T Consensus 164 vNK~D~~~~~~~~~~~i~~~-----i~~~~~~~~~~~---~~iipiSA~~g~ni~ 210 (632)
T PRK05506 164 VNKMDLVDYDQEVFDEIVAD-----YRAFAAKLGLHD---VTFIPISALKGDNVV 210 (632)
T ss_pred EEecccccchhHHHHHHHHH-----HHHHHHHcCCCC---ccEEEEecccCCCcc
Confidence 99999875322344444444 444444333210 011244666666655
No 206
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.41 E-value=6.4e-12 Score=114.47 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=92.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccccccc-----------------------------ccCCCCCceeeEeEEEEeeC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA-----------------------------SAGSSGVTKTCEMKTTVLKD 67 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~ 67 (363)
.+..+|+++|+.++|||||++.|+....... .....+.|.+.....+.+ +
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~ 83 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-D 83 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-C
Confidence 3457999999999999999999974211000 001234555555555555 6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC---CCHHHHHHHHHHHHHhccccccceEEEE
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR---FSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~i~v~ 144 (363)
+..++|+||||..+ +...+.......|++++|+|+++. ........+..+ ..++. .++++++
T Consensus 84 ~~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~---~~iIVvi 148 (426)
T TIGR00483 84 KYEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGI---NQLIVAI 148 (426)
T ss_pred CeEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCC---CeEEEEE
Confidence 77899999999432 223333344678999999999744 222222222222 22332 2788999
Q ss_pred eCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHH
Q 017924 145 TGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199 (363)
Q Consensus 145 n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (363)
||+|+...+...++..... +..++...+.... .......|+..+.++.+
T Consensus 149 NK~Dl~~~~~~~~~~~~~e-----i~~~~~~~g~~~~-~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 149 NKMDSVNYDEEEFEAIKKE-----VSNLIKKVGYNPD-TVPFIPISAWNGDNVIK 197 (426)
T ss_pred EChhccCccHHHHHHHHHH-----HHHHHHHcCCCcc-cceEEEeeccccccccc
Confidence 9999874322334444444 5555554432100 00112456666766665
No 207
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.40 E-value=1.3e-11 Score=111.21 Aligned_cols=121 Identities=18% Similarity=0.248 Sum_probs=77.7
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcc------ccccc--------ccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGR------KAFKA--------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~------~~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
+.+..+|+++|+.++|||||+++|++. ..+.. ..-..+.|.+.....+.. ++..++++||||..+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD 87 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH
Confidence 456689999999999999999999843 11100 011134455443333333 567789999999643
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
+...+......+|++++|+|+...........+..+... +. .++++++||+|+...
T Consensus 88 -----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 88 -----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-GV---PYIVVFLNKCDMVDD 143 (394)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEecccCCH
Confidence 222222333477999999999755666666666665443 32 145578999998754
No 208
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=4.6e-12 Score=97.04 Aligned_cols=159 Identities=23% Similarity=0.252 Sum_probs=98.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE--EEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
..+|+|+|..|+|||||+-.+. ...|+.. ...|+..-... +.. ++ ..+.+|||.|... +.
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfv-k~~F~e~---~e~TIGaaF~tktv~~-~~~~ikfeIWDTAGQER-----------y~ 68 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFV-KDQFHEN---IEPTIGAAFLTKTVTV-DDNTIKFEIWDTAGQER-----------YH 68 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhh-hCccccc---cccccccEEEEEEEEe-CCcEEEEEEEEcCCccc-----------cc
Confidence 4799999999999999997665 3334331 11122222111 122 33 4667999999543 44
Q ss_pred HHHhccCCCccEEEEEeecCCCCC-HHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
.....+++++++.|+|+|+++.-+ ...+.++..+....+.++ .+.|+.||+|+...-....++ .....
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~~R~V~~~e---------a~~yA 137 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLERREVEFEE---------AQAYA 137 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhhcccccHHH---------HHHHH
Confidence 455667889999999999983322 233556777776655432 333578999998631112221 22233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+..+..++ ++|++++.++++++..|.+.+..
T Consensus 138 e~~gll~~------ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 138 ESQGLLFF------ETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred HhcCCEEE------EEecccccCHHHHHHHHHHhccC
Confidence 33333333 67889999999999988877653
No 209
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.39 E-value=6.1e-11 Score=111.38 Aligned_cols=154 Identities=17% Similarity=0.203 Sum_probs=91.9
Q ss_pred cCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCcc
Q 017924 26 GRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIH 105 (363)
Q Consensus 26 G~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (363)
|.+|+|||||+|.|+|... ..+.. .+.|++.....+.+ ++..+.++||||..+...... .+.+.+.. .....+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~-pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~--~e~v~~~~-l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNW-PGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSL--EEEVARDY-LLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCC-CCeEEEEEEEEEEE-CCeEEEEEECCCccccCccch--HHHHHHHH-HhhcCCC
Confidence 8999999999999998764 22222 23454444444555 677889999999876432211 11222221 1224689
Q ss_pred EEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecC
Q 017924 106 AFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185 (363)
Q Consensus 106 ~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (363)
++++|+|.+ .+... ......+.+ .+ .|+++++||+|.... ..+... ...+.+..+..+
T Consensus 75 vvI~VvDat-~ler~-l~l~~ql~~---~~--~PiIIVlNK~Dl~~~--~~i~~d--------~~~L~~~lg~pv----- 132 (591)
T TIGR00437 75 LVVNVVDAS-NLERN-LYLTLQLLE---LG--IPMILALNLVDEAEK--KGIRID--------EEKLEERLGVPV----- 132 (591)
T ss_pred EEEEEecCC-cchhh-HHHHHHHHh---cC--CCEEEEEehhHHHHh--CCChhh--------HHHHHHHcCCCE-----
Confidence 999999987 43322 222222222 12 389999999998643 211111 122223333222
Q ss_pred CCcccccchhHHHHHHHHHHHHH
Q 017924 186 KTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 186 ~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...|++++.+++++++.+.+..
T Consensus 133 -v~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 133 -VPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred -EEEECCCCCCHHHHHHHHHHHh
Confidence 3567888899999999887654
No 210
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.39 E-value=1.2e-11 Score=91.33 Aligned_cols=161 Identities=15% Similarity=0.141 Sum_probs=94.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|||.+|+|||||+-.++ .+.|.. ....++-++..+...... ....+.+|||.| .+.++....
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv-~~~fd~-~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG-----------qErFRtLTp 78 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFV-SNTFDD-LHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG-----------QERFRTLTP 78 (209)
T ss_pred EEEEEEccCCccHHHHHHHHH-hcccCc-cCCceeeeeEEEEEEEEcCceEEEEEEeccc-----------hHhhhccCH
Confidence 799999999999999998887 333332 112223344455555552 234778999999 345666666
Q ss_pred ccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
.+++++.++|+|.|++.+-+-... .+++.+..++... ..-.++|.||+|.... . .+.+ .+ -..+... +
T Consensus 79 SyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~-diikmlVgNKiDkes~--R----~V~r--eE-G~kfAr~-h 147 (209)
T KOG0080|consen 79 SYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNP-DIIKMLVGNKIDKESE--R----VVDR--EE-GLKFARK-H 147 (209)
T ss_pred hHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCc-cHhHhhhcccccchhc--c----cccH--HH-HHHHHHh-h
Confidence 778899999999999844333222 3444444443322 1123467899997643 1 1111 00 0011111 2
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
...+. +.|++...++...++.+-..+-
T Consensus 148 ~~LFi-----E~SAkt~~~V~~~FeelveKIi 174 (209)
T KOG0080|consen 148 RCLFI-----ECSAKTRENVQCCFEELVEKII 174 (209)
T ss_pred CcEEE-----EcchhhhccHHHHHHHHHHHHh
Confidence 22222 5577777888887776655443
No 211
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.38 E-value=5.1e-12 Score=103.72 Aligned_cols=115 Identities=20% Similarity=0.309 Sum_probs=72.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccc--------------cCCCCCceeeEeEEEEee---------CCcEEEEEeC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AGSSGVTKTCEMKTTVLK---------DGQVVNVIDT 76 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------~~~~~~l~Dt 76 (363)
++|+|+|+.++|||||+++|+........ ....+.|+........+. .+..++++||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 37999999999999999999744311000 011223333322222331 1567889999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCC
Q 017924 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (363)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~ 150 (363)
||..+. ... ...+...+|++++|+|+...........++..... + .++++++||+|+.
T Consensus 81 PG~~~f-------~~~----~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~-~----~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDF-------SSE----VTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE-R----VKPVLVINKIDRL 138 (222)
T ss_pred CCcccc-------HHH----HHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCcc
Confidence 997763 122 22333467999999999866766666665554432 2 2799999999976
No 212
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.38 E-value=8e-12 Score=116.34 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=72.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-----------------CCcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~l~DtpG~~~~ 82 (363)
..|+|+|+.|+|||||+|.|++..... ...++.|.......+.+. ....++|+||||...
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~--~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~- 81 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAK--REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA- 81 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccc--ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh-
Confidence 589999999999999999999875411 112223322222211110 012378999999543
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
+......++...|++++|+|+++.+.......+..+... + .|+++++||+|+..
T Consensus 82 ----------f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-~----vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 82 ----------FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-K----TPFVVAANKIDRIP 135 (590)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-C----CCEEEEEECCCccc
Confidence 222222344578999999999866666666665554432 2 28999999999863
No 213
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=4.1e-11 Score=91.93 Aligned_cols=161 Identities=17% Similarity=0.218 Sum_probs=104.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..+|+++|..++||||||+... .+.|.. ....++-++-....+.+. ....+.+|||.| .+.++..+
T Consensus 22 ~~KlVflGdqsVGKTslItRf~-yd~fd~-~YqATIGiDFlskt~~l~d~~vrLQlWDTAG-----------QERFrsli 88 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFM-YDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QERFRSLI 88 (221)
T ss_pred EEEEEEEccCccchHHHHHHHH-Hhhhcc-cccceeeeEEEEEEEEEcCcEEEEEEEeccc-----------HHHHhhhh
Confidence 3699999999999999999887 333322 112222222223333331 234678999999 45677777
Q ss_pred hccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccc-cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~-~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
..++++..++++|+|++++-+-+ ...+++-+....|.+ + .+++|.||.|+.+.-+-..++- ......
T Consensus 89 psY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~v--iI~LVGnKtDL~dkrqvs~eEg---------~~kAke 157 (221)
T KOG0094|consen 89 PSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDV--IIFLVGNKTDLSDKRQVSIEEG---------ERKAKE 157 (221)
T ss_pred hhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCce--EEEEEcccccccchhhhhHHHH---------HHHHHH
Confidence 88888999999999998666643 356777777766653 3 5667789999986611111111 122333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.+..|. .++++.+.++..|+..|...+.
T Consensus 158 l~a~f~------etsak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094|consen 158 LNAEFI------ETSAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred hCcEEE------EecccCCCCHHHHHHHHHHhcc
Confidence 344333 5678889999999998777654
No 214
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.37 E-value=2e-11 Score=114.32 Aligned_cols=115 Identities=21% Similarity=0.369 Sum_probs=79.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc-ccccc-------------cCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK-AFKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 85 (363)
.+|+|||+.++|||||++.|+... .|... ....++|+......+.| ++..++++||||..+.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF--- 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADF--- 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHH---
Confidence 489999999999999999997431 11110 11234666666667777 7899999999996552
Q ss_pred hHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
..++.+ +...+|++++|+|+........+.++..+... + .++++++||+|...
T Consensus 78 ----~~ev~~----~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~-~----ip~IVviNKiD~~~ 130 (594)
T TIGR01394 78 ----GGEVER----VLGMVDGVLLLVDASEGPMPQTRFVLKKALEL-G----LKPIVVINKIDRPS 130 (594)
T ss_pred ----HHHHHH----HHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC-C----CCEEEEEECCCCCC
Confidence 222322 33467999999999755555566666655442 2 27899999999864
No 215
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.37 E-value=3.3e-11 Score=97.77 Aligned_cols=150 Identities=15% Similarity=0.075 Sum_probs=88.4
Q ss_pred EcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE--EEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccC
Q 017924 25 LGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (363)
Q Consensus 25 vG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (363)
||..|+|||||++.+++.. |.. ....|+...+.. +.+. ....+.|+||+|... +......++
T Consensus 1 vG~~~vGKTsLi~r~~~~~-f~~---~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~-----------~~~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE-FEK---KYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK-----------FGGLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC-CCC---CCCCceeEEEEEEEEEECCEEEEEEEEECCCchh-----------hhhhhHHHh
Confidence 6999999999999988433 221 112233222222 2221 235788999999543 222233356
Q ss_pred CCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCce
Q 017924 102 DGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (363)
Q Consensus 102 ~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 180 (363)
.+++++++|+|++++.+-... .++..+...+. . .++++|.||+|+... ....+. . .+....+..+
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~--~piilvgNK~Dl~~~--~v~~~~--------~-~~~~~~~~~~ 131 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDVKDR--KVKAKS--------I-TFHRKKNLQY 131 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccccc--cCCHHH--------H-HHHHHcCCEE
Confidence 688999999999844433322 34444555432 2 389999999997532 111111 1 1222222222
Q ss_pred EEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+ .+|++.+.++.+++..+...+.
T Consensus 132 ~------e~SAk~~~~v~~~F~~l~~~i~ 154 (200)
T smart00176 132 Y------DISAKSNYNFEKPFLWLARKLI 154 (200)
T ss_pred E------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2 5788889999999998876653
No 216
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.36 E-value=1.9e-11 Score=104.47 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=72.4
Q ss_pred EEEEEcCCCCchHHHHHHhhccccc--c-cccCC-------------CCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAF--K-ASAGS-------------SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~--~-~~~~~-------------~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (363)
+|+|+|+.|+|||||++.|++.... . ..... ...++......+.+ ++..++++||||..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f-- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADF-- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHH--
Confidence 5899999999999999998743210 0 00000 12223333444555 6788999999996531
Q ss_pred ChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
...... +...+|++++|++++..........++.+.. .+ .|.++++||+|....
T Consensus 78 -----~~~~~~----~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~-~~----~p~iivvNK~D~~~~ 131 (268)
T cd04170 78 -----VGETRA----ALRAADAALVVVSAQSGVEVGTEKLWEFADE-AG----IPRIIFINKMDRERA 131 (268)
T ss_pred -----HHHHHH----HHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECCccCCC
Confidence 122222 2336799999999885555555555554433 22 289999999998754
No 217
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.36 E-value=2.8e-11 Score=91.87 Aligned_cols=163 Identities=15% Similarity=0.092 Sum_probs=95.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
++|.|.|.+|+|||||+|.++...- .. ....++..+-....+.+ ++. .+.+|||.| .+.+...-
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF-~~-qykaTIgadFltKev~V-d~~~vtlQiWDTAG-----------QERFqsLg 75 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKF-SQ-QYKATIGADFLTKEVQV-DDRSVTLQIWDTAG-----------QERFQSLG 75 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH-HH-HhccccchhheeeEEEE-cCeEEEEEEEeccc-----------HHHhhhcc
Confidence 6999999999999999999985543 11 11111222222223333 333 456899999 34455555
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHH-HHHHHhc--cccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~-~~~~~~~--~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
..+++++|.+++++++.+.-+.+....++ .+..... .....|++|+.||+|.... .....-... ...+..
T Consensus 76 ~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~--~~r~VS~~~-----Aq~WC~ 148 (210)
T KOG0394|consen 76 VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG--KSRQVSEKK-----AQTWCK 148 (210)
T ss_pred cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC--ccceeeHHH-----HHHHHH
Confidence 66788999999999987444444443332 2222211 1233489999999998653 111101111 222333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.-++..++ ++|++...++.+.++.+....
T Consensus 149 s~gnipyf-----EtSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 149 SKGNIPYF-----ETSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred hcCCceeE-----EecccccccHHHHHHHHHHHH
Confidence 22333332 678888889998888776654
No 218
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.36 E-value=1.2e-11 Score=111.87 Aligned_cols=170 Identities=11% Similarity=0.113 Sum_probs=102.2
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhcccccccc-cCCCCCceeeEeEEE---------------Eee------------
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTT---------------VLK------------ 66 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~-~~~~~~t~~~~~~~~---------------~~~------------ 66 (363)
+.....+|+++|+...|||||+++|+|...+... ....+.|.+..+... .+.
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 3456689999999999999999999986542211 111223322221111 000
Q ss_pred -----CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC-CCHHHHHHHHHHHHHhccccccce
Q 017924 67 -----DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYM 140 (363)
Q Consensus 67 -----~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ 140 (363)
-...++|+|+||.. .+.+.+......+|++++|+++... .....+..+..+ ..++-. ++
T Consensus 110 ~~~~~~~~~i~~IDtPGH~-----------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lgi~---~i 174 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHD-----------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIMKLK---HI 174 (460)
T ss_pred cccccccceEeeeeCCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHcCCC---cE
Confidence 02468899999942 3333333444578999999999743 233334444333 334432 78
Q ss_pred EEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 141 i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
++++||+|+... ..+++.... +..++..... ........|+..+.++..|++.|...+.
T Consensus 175 IVvlNKiDlv~~--~~~~~~~~e-----i~~~l~~~~~---~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 175 IILQNKIDLVKE--AQAQDQYEE-----IRNFVKGTIA---DNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred EEEEecccccCH--HHHHHHHHH-----HHHHHHhhcc---CCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 999999999865 555544444 4444332211 1112346788889999999999987554
No 219
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.35 E-value=1.8e-11 Score=111.27 Aligned_cols=140 Identities=17% Similarity=0.217 Sum_probs=85.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc---------------------c--------ccccCCCCCceeeEeEEEEeeC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA---------------------F--------KASAGSSGVTKTCEMKTTVLKD 67 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~---------------------~--------~~~~~~~~~t~~~~~~~~~~~~ 67 (363)
.+..+|+++|+.++|||||+..|+.... + ....-..+.|.+.....+.+ +
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~ 83 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-P 83 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-C
Confidence 3457999999999999999998863110 0 00011233455555555555 6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCC-------CHHHHHHHHHHHHHhccccccce
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDYM 140 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~ 140 (363)
+..++|+||||..+ +...+......+|++++|+|+.... ....+..+..+.. .|-. ++
T Consensus 84 ~~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi~---~i 148 (446)
T PTZ00141 84 KYYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGVK---QM 148 (446)
T ss_pred CeEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCCC---eE
Confidence 78999999999443 3333333445789999999987433 2344444544433 3432 57
Q ss_pred EEEEeCCCCCC--cchhhHHHHhccCCCchHHHHHHhcC
Q 017924 141 IVVFTGGDDLE--DHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 141 i~v~n~~D~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
++++||+|... .+...+++.... +...+...+
T Consensus 149 iv~vNKmD~~~~~~~~~~~~~i~~~-----i~~~l~~~g 182 (446)
T PTZ00141 149 IVCINKMDDKTVNYSQERYDEIKKE-----VSAYLKKVG 182 (446)
T ss_pred EEEEEccccccchhhHHHHHHHHHH-----HHHHHHhcC
Confidence 88999999532 222455555555 666655443
No 220
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.35 E-value=1.5e-11 Score=101.35 Aligned_cols=115 Identities=20% Similarity=0.265 Sum_probs=69.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhccccccc---c--------------cCCCCCceeeEeEEEEee----CCcEEEEEeCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKA---S--------------AGSSGVTKTCEMKTTVLK----DGQVVNVIDTPG 78 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~---~--------------~~~~~~t~~~~~~~~~~~----~~~~~~l~DtpG 78 (363)
.+|+|+|+.|+|||||++.|++...... . ....+.+.......+.+. ....++++||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 3699999999999999999986432110 0 001112222222222221 235788999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCC
Q 017924 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~ 150 (363)
..+. ... .......+|++++|+|+.+..+......++.+.. .+ .++++|+||+|..
T Consensus 81 ~~~f-------~~~----~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~-~~----~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNF-------MDE----VAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL-EG----LPIVLVINKIDRL 136 (213)
T ss_pred Ccch-------HHH----HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECcccC
Confidence 7652 111 2222346799999999875555544444443322 12 3899999999986
No 221
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.35 E-value=2.3e-11 Score=114.21 Aligned_cols=160 Identities=18% Similarity=0.221 Sum_probs=96.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc------ccccc-------CCCCCceeeEeEEEEee--C--CcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA------FKASA-------GSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~------~~~~~-------~~~~~t~~~~~~~~~~~--~--~~~~~l~DtpG~~~~ 82 (363)
.+|+|+|+.|+|||||++.|+.... +.... ...++|.......+.|. + ...++||||||..+.
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 5899999999999999999975421 11101 01234544444334332 2 257899999997652
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~ 162 (363)
..... .++..+|++++|+|+++..+......+..... .. .++++|+||+|+... . .+....
T Consensus 84 -------~~~v~----~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~--ipiIiViNKiDl~~~--~-~~~~~~ 144 (595)
T TIGR01393 84 -------SYEVS----RSLAACEGALLLVDAAQGIEAQTLANVYLALE---ND--LEIIPVINKIDLPSA--D-PERVKK 144 (595)
T ss_pred -------HHHHH----HHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cC--CCEEEEEECcCCCcc--C-HHHHHH
Confidence 11222 23446799999999986666555544433322 12 279999999998643 1 111222
Q ss_pred cCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
. +...+ +.. +......|+.++.++.+|++.|...+.
T Consensus 145 e-----l~~~l---g~~---~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 145 E-----IEEVI---GLD---ASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred H-----HHHHh---CCC---cceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 2 22222 111 011235688899999999998877664
No 222
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=5.4e-11 Score=105.22 Aligned_cols=160 Identities=15% Similarity=0.182 Sum_probs=115.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
..|-|+|+...||||||++|.+... .....|++|....-+.+....|..++|+||||. ..|...-.+
T Consensus 154 PVVTiMGHVDHGKTTLLD~lRks~V--AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH-----------aAF~aMRaR 220 (683)
T KOG1145|consen 154 PVVTIMGHVDHGKTTLLDALRKSSV--AAGEAGGITQHIGAFTVTLPSGKSITFLDTPGH-----------AAFSAMRAR 220 (683)
T ss_pred CeEEEeecccCChhhHHHHHhhCce--ehhhcCCccceeceEEEecCCCCEEEEecCCcH-----------HHHHHHHhc
Confidence 5899999999999999999987765 334467788888888887778999999999994 345555556
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
.....|.+++|+.+++..-......++..+.. .+ |+++.+||+|....+-+.....|.. ..-.++.+|+.
T Consensus 221 GA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A---~V--piVvAinKiDkp~a~pekv~~eL~~-----~gi~~E~~GGd 290 (683)
T KOG1145|consen 221 GANVTDIVVLVVAADDGVMPQTLEAIKHAKSA---NV--PIVVAINKIDKPGANPEKVKRELLS-----QGIVVEDLGGD 290 (683)
T ss_pred cCccccEEEEEEEccCCccHhHHHHHHHHHhc---CC--CEEEEEeccCCCCCCHHHHHHHHHH-----cCccHHHcCCc
Confidence 66778999999998877776666666655543 33 9999999999876532333222222 22235666776
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
..++ ..|+.++.++..|.+.+.-
T Consensus 291 VQvi----piSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 291 VQVI----PISALTGENLDLLEEAILL 313 (683)
T ss_pred eeEE----EeecccCCChHHHHHHHHH
Confidence 6653 5678888898888776543
No 223
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=4.6e-11 Score=106.27 Aligned_cols=163 Identities=17% Similarity=0.194 Sum_probs=115.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..|.++|+...|||||+..|-+... ..--.|++|.+..-+.+... +...++|+||||.. .|...-
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~V--a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHe-----------AFt~mR 72 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNV--AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHE-----------AFTAMR 72 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCcc--ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHH-----------HHHHHH
Confidence 5899999999999999999987766 32345777877777777764 34789999999943 455544
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
.+...-.|.+++|+++++.+-......+..++.. .+ |+++.+||+|+...+-.....-+.. ..-..+.++
T Consensus 73 aRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a---~v--P~iVAiNKiDk~~~np~~v~~el~~-----~gl~~E~~g 142 (509)
T COG0532 73 ARGASVTDIAILVVAADDGVMPQTIEAINHAKAA---GV--PIVVAINKIDKPEANPDKVKQELQE-----YGLVPEEWG 142 (509)
T ss_pred hcCCccccEEEEEEEccCCcchhHHHHHHHHHHC---CC--CEEEEEecccCCCCCHHHHHHHHHH-----cCCCHhhcC
Confidence 5566677999999999988888887777777664 33 9999999999986522222222222 111233334
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+...+ ...|++++.++.+|++.+.....
T Consensus 143 g~v~~----VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 143 GDVIF----VPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred CceEE----EEeeccCCCCHHHHHHHHHHHHH
Confidence 43322 26789999999999998766544
No 224
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=8.6e-11 Score=89.43 Aligned_cols=158 Identities=16% Similarity=0.171 Sum_probs=96.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.++.++|..|+|||+|+...+... |.+.. ..+.-++-....+.. ++ .++.+|||.|.. .+....
T Consensus 7 fKyIiiGd~gVGKSclllrf~~kr-F~~~h-d~TiGvefg~r~~~i-d~k~IKlqiwDtaGqe-----------~frsv~ 72 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKR-FQPVH-DLTIGVEFGARMVTI-DGKQIKLQIWDTAGQE-----------SFRSVT 72 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccC-ccccc-cceeeeeeceeEEEE-cCceEEEEEEecCCcH-----------HHHHHH
Confidence 588999999999999999998554 43322 222333334444555 43 467899999954 344444
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
..++.++.+.|+|+|++.+-+-... .+|.-++.+...+. -++++.||+|+... ..+ -+. .-..+.+.
T Consensus 73 ~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~Nm--vImLiGNKsDL~~r--R~V---s~E----EGeaFA~e- 140 (216)
T KOG0098|consen 73 RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENM--VIMLIGNKSDLEAR--REV---SKE----EGEAFARE- 140 (216)
T ss_pred HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCc--EEEEEcchhhhhcc--ccc---cHH----HHHHHHHH-
Confidence 5567788999999999855443333 45555555543322 45566799998755 211 111 12223333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
++-.+. ++|++.+.++++.+..+...+
T Consensus 141 hgLifm-----ETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 141 HGLIFM-----ETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred cCceee-----hhhhhhhhhHHHHHHHHHHHH
Confidence 332222 678888888888776555443
No 225
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=4.6e-11 Score=92.99 Aligned_cols=116 Identities=21% Similarity=0.247 Sum_probs=78.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|++||.+|+|||-|+..++.. -|.. .+..++-++........ ++. ...+|||.|. +.++...
T Consensus 15 FKiVliGDS~VGKsnLlsRftrn-EF~~-~SksTIGvef~t~t~~v-d~k~vkaqIWDTAGQ-----------ERyrAit 80 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRN-EFSL-ESKSTIGVEFATRTVNV-DGKTVKAQIWDTAGQ-----------ERYRAIT 80 (222)
T ss_pred EEEEEeCCCccchhHHHHHhccc-ccCc-ccccceeEEEEeeceee-cCcEEEEeeecccch-----------hhhcccc
Confidence 47999999999999999998844 3332 11222222333333334 443 4569999993 3455556
Q ss_pred hccCCCccEEEEEeecCCCCCH-HHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
...++++.+.++|+|++.+.+- .-.++|+.++.+....+ .+++|.||+|+..
T Consensus 81 SaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~ni--vimLvGNK~DL~~ 133 (222)
T KOG0087|consen 81 SAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNI--VIMLVGNKSDLNH 133 (222)
T ss_pred chhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCe--EEEEeecchhhhh
Confidence 6778899999999999845543 44567777777665544 6778899999864
No 226
>PRK10218 GTP-binding protein; Provisional
Probab=99.33 E-value=3.6e-11 Score=112.41 Aligned_cols=116 Identities=18% Similarity=0.287 Sum_probs=78.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc-ccccc-------------cCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK-AFKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 85 (363)
.+|+|+|+.|+|||||++.|++.. .|... ....++|.......+.+ ++..++++||||..+..
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~-- 82 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFG-- 82 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhH--
Confidence 689999999999999999998532 11110 11234455555555566 78899999999976631
Q ss_pred hHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
.... .++..+|++++|+|+...........+..+.. .+ .+.++++||+|....
T Consensus 83 -----~~v~----~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~-~g----ip~IVviNKiD~~~a 135 (607)
T PRK10218 83 -----GEVE----RVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA-YG----LKPIVVINKVDRPGA 135 (607)
T ss_pred -----HHHH----HHHHhCCEEEEEEecccCccHHHHHHHHHHHH-cC----CCEEEEEECcCCCCC
Confidence 1222 23356899999999875555555555555443 23 278999999998643
No 227
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.33 E-value=5.9e-12 Score=100.02 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=67.8
Q ss_pred EEEEcCCCCchHHHHHHhhcccccccccCCCCCce-eeEe----------------------------------------
Q 017924 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEM---------------------------------------- 60 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~-~~~~---------------------------------------- 60 (363)
|+|+|..++|||||||+|+|...+..+....+... ....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 78999999999999999999875443322111000 0000
Q ss_pred ------------EEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHH
Q 017924 61 ------------KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128 (363)
Q Consensus 61 ------------~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~ 128 (363)
..........+.|+||||+.+....... .+..++ ...|+++||.++.+.++..+...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~---~~~~~~----~~~d~vi~V~~~~~~~~~~~~~~l~~~ 153 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTE---ITEEYL----PKADVVIFVVDANQDLTESDMEFLKQM 153 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSH---HHHHHH----STTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHH---HHHHhh----ccCCEEEEEeccCcccchHHHHHHHHH
Confidence 0001112334789999999764332222 222222 467999999999866666665555554
Q ss_pred HHHhccccccceEEEEeCC
Q 017924 129 PNLFGKNVFDYMIVVFTGG 147 (363)
Q Consensus 129 ~~~~~~~~~~~~i~v~n~~ 147 (363)
...... .+++|+||+
T Consensus 154 ~~~~~~----~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDPDKS----RTIFVLNKA 168 (168)
T ss_dssp HTTTCS----SEEEEEE-G
T ss_pred hcCCCC----eEEEEEcCC
Confidence 443332 588888874
No 228
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.33 E-value=7e-11 Score=97.76 Aligned_cols=157 Identities=15% Similarity=0.084 Sum_probs=86.6
Q ss_pred CccEEEEEcCCCCchHHHHH-HhhcccccccccCCCCCceeeEeEEEE--ee-CCcEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGN-SILGRKAFKASAGSSGVTKTCEMKTTV--LK-DGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~-~l~g~~~~~~~~~~~~~t~~~~~~~~~--~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
...+|+|+|++|||||||++ .+.|... . ....|....+.... .. ....+.++||+|.... ..+
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~--~---~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~--------~~~ 74 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFE--K---KYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF--------GGL 74 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCC--C---CCCCccceEEEEEEEEECCeEEEEEEEECCCchhh--------hhh
Confidence 44799999999999999996 5555432 1 11112222222221 11 2357789999985431 111
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
. ...+...+++++++|++++.+-.. ..++..+...+. . .+++++.||+|.... ....+ ...+
T Consensus 75 ~---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~~i~lv~nK~Dl~~~--~~~~~---------~~~~ 137 (215)
T PTZ00132 75 R---DGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-N--IPIVLVGNKVDVKDR--QVKAR---------QITF 137 (215)
T ss_pred h---HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccCccc--cCCHH---------HHHH
Confidence 1 122346789999999874443322 223334433322 2 378889999997533 11111 1112
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
....+..++ ..|+..+.++.+.+..|.+.+..
T Consensus 138 ~~~~~~~~~------e~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 138 HRKKNLQYY------DISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred HHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHhh
Confidence 222222222 45777778888888777666543
No 229
>PLN03126 Elongation factor Tu; Provisional
Probab=99.32 E-value=4.5e-11 Score=109.00 Aligned_cols=138 Identities=17% Similarity=0.196 Sum_probs=86.8
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccc--------------cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
..+..+|+++|+.++|||||++.|++..... ......+.|.+.....+.+ ++..++++||||..+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~ 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHAD 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHH
Confidence 3456899999999999999999998532100 0011233454444444444 677899999999543
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhh-HHHH
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDF 160 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~-l~~~ 160 (363)
+...+......+|++++|+|+........+..+..+.. .+.. ++++++||+|+... +. .+..
T Consensus 157 -----------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~-~gi~---~iIvvvNK~Dl~~~--~~~~~~i 219 (478)
T PLN03126 157 -----------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ-VGVP---NMVVFLNKQDQVDD--EELLELV 219 (478)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEecccccCH--HHHHHHH
Confidence 22223333346799999999875666666666665443 3431 47788999998754 33 3323
Q ss_pred hccCCCchHHHHHHhc
Q 017924 161 LGHECPKPLKEILQLC 176 (363)
Q Consensus 161 ~~~~~~~~~~~~~~~~ 176 (363)
... +..++..+
T Consensus 220 ~~~-----i~~~l~~~ 230 (478)
T PLN03126 220 ELE-----VRELLSSY 230 (478)
T ss_pred HHH-----HHHHHHhc
Confidence 333 55566554
No 230
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.32 E-value=6.5e-11 Score=110.81 Aligned_cols=113 Identities=19% Similarity=0.228 Sum_probs=71.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee----------C-------CcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK----------D-------GQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~----------~-------~~~~~l~DtpG~~~~ 82 (363)
..|+|+|+.|+|||||+|.|.|... .....+..|.....+...+. . -..++|+||||..+.
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v--~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAV--AAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccc--ccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 6899999999999999999987754 11222322222221111110 0 012689999996542
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCC
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~ 150 (363)
...........|++++|+|+++.+.......+..+.. .+ .|+++++||+|..
T Consensus 85 -----------~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~-~~----vpiIvviNK~D~~ 136 (586)
T PRK04004 85 -----------TNLRKRGGALADIAILVVDINEGFQPQTIEAINILKR-RK----TPFVVAANKIDRI 136 (586)
T ss_pred -----------HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH-cC----CCEEEEEECcCCc
Confidence 2222233456899999999986666666666655543 22 2899999999975
No 231
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.32 E-value=5.1e-11 Score=92.73 Aligned_cols=112 Identities=21% Similarity=0.194 Sum_probs=65.2
Q ss_pred EEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee---CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK---DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 24 lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
|+|+.|+|||||+|.|++...... ....+. ......... .+..+.++|+||..... ......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~---~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE---EYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFR-----------SLRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc---ccccch-hheeeEEEEECCEEEEEEEEecCChHHHH-----------hHHHHH
Confidence 589999999999999997654211 111121 222222221 25678899999965421 111223
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHH--HHHHHHhccccccceEEEEeCCCCCCc
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAV--HRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
....+++++|++.++..+......+ ..+.... ....++++++||+|....
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKE--GENIPIILVGNKIDLPEE 117 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhc--cCCCcEEEEEeccccccc
Confidence 4577999999998733333332222 1111111 222489999999998755
No 232
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.32 E-value=2.4e-12 Score=95.99 Aligned_cols=115 Identities=20% Similarity=0.217 Sum_probs=62.2
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccc--cccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFK--ASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~--~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
||+|+|..|+||||||+.|++..... ........+.. ....... ....+.++|++|....... ....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~g~~~~~~~-------~~~~- 70 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIG--VDVIVVDGDRQSLQFWDFGGQEEFYSQ-------HQFF- 70 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEE--EEEEEETTEEEEEEEEEESSSHCHHCT-------SHHH-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEE--EEEEEecCCceEEEEEecCccceeccc-------ccch-
Confidence 69999999999999999999776520 00111112222 1122221 2234779999986431110 0011
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D 148 (363)
....|++++|+|.++.-+-.. ...+.++..........|+++|.||.|
T Consensus 71 ---~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 71 ---LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp ---HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ---hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 235699999999873322222 122333444332122249999999987
No 233
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.32 E-value=4.9e-11 Score=97.33 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=65.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe---eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+|+|+|++|||||||++.|.+... .. ..+ ++...+..+.. ..+..+.++||||... +...+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~-~~---t~~-s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~-----------~~~~~ 65 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKY-RS---TVT-SIEPNVATFILNSEGKGKKFRLVDVPGHPK-----------LRDKL 65 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-CC---ccC-cEeecceEEEeecCCCCceEEEEECCCCHH-----------HHHHH
Confidence 689999999999999999986542 11 111 11111222222 1356788999999543 12222
Q ss_pred hccCCCc-cEEEEEeecCCCCCHHHHHHHHHHHHHh----ccccccceEEEEeCCCCCCc
Q 017924 98 GMAKDGI-HAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 98 ~~~~~~~-~~~l~v~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~i~v~n~~D~~~~ 152 (363)
...+... ++++||+|.. ............+..++ ......|++++.||+|+...
T Consensus 66 ~~~~~~~~~~vV~VvD~~-~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 66 LETLKNSAKGIVFVVDSA-TFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHHhccCCEEEEEEECc-cchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 2223344 9999999987 33111112122221111 10112389999999998754
No 234
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.30 E-value=5.2e-11 Score=111.88 Aligned_cols=161 Identities=17% Similarity=0.220 Sum_probs=96.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc-cc-----cc-------cCCCCCceeeEeEEEEee----CCcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA-FK-----AS-------AGSSGVTKTCEMKTTVLK----DGQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~-~~-----~~-------~~~~~~t~~~~~~~~~~~----~~~~~~l~DtpG~~~~ 82 (363)
.+|+|+|+.|+|||||++.|+.... +. .. ....++|+......+.|. .+..++||||||..+.
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 6999999999999999999864321 00 00 011234444433333331 2467899999997652
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~ 162 (363)
...+.+ +...+|++++|+|+++.........+..+.. . . .++++|+||+|+... . .+....
T Consensus 88 -------~~~v~~----sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-~--~--lpiIvViNKiDl~~a--~-~~~v~~ 148 (600)
T PRK05433 88 -------SYEVSR----SLAACEGALLVVDASQGVEAQTLANVYLALE-N--D--LEIIPVLNKIDLPAA--D-PERVKQ 148 (600)
T ss_pred -------HHHHHH----HHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-C--C--CCEEEEEECCCCCcc--c-HHHHHH
Confidence 122222 3346799999999986666555544443322 1 2 279999999998643 1 122222
Q ss_pred cCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
. +...+ +... ......|+..+.++.+|++.|...+..
T Consensus 149 e-----i~~~l---g~~~---~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 149 E-----IEDVI---GIDA---SDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred H-----HHHHh---CCCc---ceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 2 22221 1110 012356888899999999998776643
No 235
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.30 E-value=1.3e-10 Score=95.96 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=48.0
Q ss_pred cEEEEEeCCCCCCCC--CChHHHHHHHHHHHhccCC-CccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEE
Q 017924 69 QVVNVIDTPGLFDLS--AGSEFVGKEIVKCLGMAKD-GIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVF 144 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~ 144 (363)
..++|+||||+.... .....+...+...+..+.. ..+.+++|+++...+...+ ....+.+... + .++++|+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~-~----~rti~Vi 199 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQ-G----ERTIGVI 199 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHc-C----CcEEEEE
Confidence 467899999997431 1123334444444444444 3468899998864555444 3343333322 2 3899999
Q ss_pred eCCCCCCc
Q 017924 145 TGGDDLED 152 (363)
Q Consensus 145 n~~D~~~~ 152 (363)
||+|....
T Consensus 200 TK~D~~~~ 207 (240)
T smart00053 200 TKLDLMDE 207 (240)
T ss_pred ECCCCCCc
Confidence 99999865
No 236
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.30 E-value=3.5e-11 Score=115.83 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=80.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccc---cccC-------------CCCCceeeEeEEEEeeCCcEEEEEeCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFK---ASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~---~~~~-------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (363)
=.+|+|+|+.|+|||||+|+|++..... .... ..+.|+......+.+ ++..++++||||..+.
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGHVDF 88 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCCcch
Confidence 3699999999999999999996422100 0000 234555566666677 7889999999998763
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
. .+.. .+...+|++++|+|+.......+...+..+... + .++++++||+|+...
T Consensus 89 ~-------~~~~----~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~----~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 89 T-------VEVE----RSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-E----VPRIAFVNKMDKTGA 142 (689)
T ss_pred h-------HHHH----HHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 1 1222 223456999999998766666666666654432 2 288999999998854
No 237
>PRK00007 elongation factor G; Reviewed
Probab=99.29 E-value=4e-11 Score=115.30 Aligned_cols=117 Identities=21% Similarity=0.276 Sum_probs=81.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhh---ccccccccc-------------CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL---GRKAFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~---g~~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (363)
=.+|+|+|+.|+|||||++.|+ |........ ...+.|.+.....+.+ .+..++|+||||+.+.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~~~f 88 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGHVDF 88 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCcHHH
Confidence 3699999999999999999996 332110000 1234565555566666 7889999999996542
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+..+. ...+|++++|+|+.......+...+..+... +. +.++++||+|....
T Consensus 89 -------~~ev~~a----l~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~~----p~iv~vNK~D~~~~ 142 (693)
T PRK00007 89 -------TIEVERS----LRVLDGAVAVFDAVGGVEPQSETVWRQADKY-KV----PRIAFVNKMDRTGA 142 (693)
T ss_pred -------HHHHHHH----HHHcCEEEEEEECCCCcchhhHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence 1223332 3356899999998767777777777766553 32 78899999998865
No 238
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.28 E-value=7.8e-11 Score=92.94 Aligned_cols=156 Identities=20% Similarity=0.266 Sum_probs=89.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+|+|+|..|+|||||++.+.+.. |.... ..+...+.....+.. ++ ..+.++|++|.... ..+..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~-~~~~~-~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~--------~~~~~--- 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE-FPENY-IPTIGIDSYSKEVSI-DGKPVNLEIWDTSGQERF--------DSLRD--- 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS-TTSSS-ETTSSEEEEEEEEEE-TTEEEEEEEEEETTSGGG--------HHHHH---
T ss_pred CEEEECCCCCCHHHHHHHHHhhc-ccccc-ccccccccccccccc-cccccccccccccccccc--------ccccc---
Confidence 68999999999999999998654 22211 111112222233333 33 35789999985321 12222
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+...|+++++++.++.-+-.. ..++..+....... .+++++.||.|.........++ ...+....+
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~--~~iivvg~K~D~~~~~~v~~~~---------~~~~~~~~~ 135 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPED--IPIIVVGNKSDLSDEREVSVEE---------AQEFAKELG 135 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTT--SEEEEEEETTTGGGGSSSCHHH---------HHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccc--ccceeeeccccccccccchhhH---------HHHHHHHhC
Confidence 23457899999999873322222 23444555544422 2889999999987520011111 233444545
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
..|+ ..|++.+.++.+++..+-+.
T Consensus 136 ~~~~------e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 136 VPYF------EVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp SEEE------EEBTTTTTTHHHHHHHHHHH
T ss_pred CEEE------EEECCCCCCHHHHHHHHHHH
Confidence 3333 45677778888887765543
No 239
>PLN00023 GTP-binding protein; Provisional
Probab=99.28 E-value=7.8e-11 Score=100.29 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=72.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee--EeEEEEee--------------CCcEEEEEeCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLK--------------DGQVVNVIDTPGLFDL 82 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~--------------~~~~~~l~DtpG~~~~ 82 (363)
..+|+|+|..|+|||||++.+++... .. ....|+.+ .+..+.+. ....+.|+||.|...
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g~F-~~---~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr- 95 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKGSS-IA---RPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER- 95 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCc-cc---ccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh-
Confidence 37999999999999999999986542 11 11122222 12222221 124578999999543
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhcc----------ccccceEEEEeCCCCCC
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK----------NVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~----------~~~~~~i~v~n~~D~~~ 151 (363)
+.......+.+++++|+|+|++++-+-... .++..+...... ....+++||.||+|+..
T Consensus 96 ----------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 96 ----------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred ----------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 333334456789999999999844333332 344445443210 01137899999999864
Q ss_pred c
Q 017924 152 D 152 (363)
Q Consensus 152 ~ 152 (363)
.
T Consensus 166 ~ 166 (334)
T PLN00023 166 K 166 (334)
T ss_pred c
Confidence 3
No 240
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.27 E-value=3.9e-10 Score=86.16 Aligned_cols=119 Identities=17% Similarity=0.233 Sum_probs=78.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccc-----ccCCCC---CceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSG---VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~ 90 (363)
+.+|+|+|+.|+||||+++.++....... ..+... .|+...+......++..+++++|||..
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~---------- 79 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQE---------- 79 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcH----------
Confidence 36999999999999999999985542110 111122 333344444455345899999999943
Q ss_pred HHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
.+..++.....+..++++++|.+...+..+...+..+..... .|++|..||.|+...
T Consensus 80 -RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a 136 (187)
T COG2229 80 -RFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDA 136 (187)
T ss_pred -HHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCC
Confidence 344444445567888888888764445556666666655432 389999999998765
No 241
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.27 E-value=1.6e-10 Score=100.44 Aligned_cols=119 Identities=22% Similarity=0.222 Sum_probs=64.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCC-CCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
...+|+|+|.+|+|||||||+|.|-..-..+... |.+.+......+...+...+++||.||++........ +...
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~----Yl~~ 109 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEE----YLKE 109 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHH----HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHH----HHHH
Confidence 3479999999999999999999874321111221 2211112222222224567889999999875443332 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCC
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~ 149 (363)
+. +...|.+|++.+ + +++..+....+.+... |+ ++.+|-||+|.
T Consensus 110 ~~--~~~yD~fiii~s-~-rf~~ndv~La~~i~~~-gK----~fyfVRTKvD~ 153 (376)
T PF05049_consen 110 VK--FYRYDFFIIISS-E-RFTENDVQLAKEIQRM-GK----KFYFVRTKVDS 153 (376)
T ss_dssp TT--GGG-SEEEEEES-S-S--HHHHHHHHHHHHT-T-----EEEEEE--HHH
T ss_pred cc--ccccCEEEEEeC-C-CCchhhHHHHHHHHHc-CC----cEEEEEecccc
Confidence 21 224577766654 3 8998888887777664 43 79999999985
No 242
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.27 E-value=2.6e-10 Score=92.37 Aligned_cols=165 Identities=12% Similarity=0.007 Sum_probs=89.3
Q ss_pred ccEEEEEcCCCCchHHHHH-Hhhcccccccc--cCCCCCcee--eEeE-E--------EEee-CCcEEEEEeCCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGN-SILGRKAFKAS--AGSSGVTKT--CEMK-T--------TVLK-DGQVVNVIDTPGLFDLS 83 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~-~l~g~~~~~~~--~~~~~~t~~--~~~~-~--------~~~~-~~~~~~l~DtpG~~~~~ 83 (363)
..+|+|+|..|+|||||+. .+.+.. |... ......|+. ..+. . .... ....+.++||+|....
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~-~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKT-LTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCC-cccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh-
Confidence 3699999999999999995 554321 1100 011112221 0010 0 0121 1346789999996431
Q ss_pred CChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHH-
Q 017924 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF- 160 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~- 160 (363)
+. ...+.++|++++|+|++++.+-... .++..+..... . .++++|.||.|+...........
T Consensus 80 ---------~~---~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgNK~DL~~~~~~~~~~~~ 144 (195)
T cd01873 80 ---------DR---RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-R--VPVILVGCKLDLRYADLDEVNRAR 144 (195)
T ss_pred ---------hh---cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhccccccchhhhcc
Confidence 11 2356789999999999855554433 24555554432 2 28999999999753200000000
Q ss_pred ---------hccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 161 ---------LGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 161 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
...-..+....+....+..|+ ++|++++.++.++++.+-+
T Consensus 145 ~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~------E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 145 RPLARPIKNADILPPETGRAVAKELGIPYY------ETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred cccccccccCCccCHHHHHHHHHHhCCEEE------EcCCCCCCCHHHHHHHHHH
Confidence 000000112334444444333 6788889999999876643
No 243
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.27 E-value=6.7e-11 Score=109.31 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=75.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc---ccccc-----------------CCCCCceeeEeEEEEeeCCcEEEEEeCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA---FKASA-----------------GSSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~---~~~~~-----------------~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 77 (363)
.-.+|+|||+.|+|||||++.|+-... ..+.. ...+.++......+.+ ++..++++|||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDTP 88 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDTP 88 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEECC
Confidence 347999999999999999998752111 00000 0122333344445555 78899999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
|..+. ......+...+|++++|+|+...+.......++.... .+ .|+++++||+|+...
T Consensus 89 G~~df-----------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~----~PiivviNKiD~~~~ 147 (527)
T TIGR00503 89 GHEDF-----------SEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-RD----TPIFTFMNKLDRDIR 147 (527)
T ss_pred ChhhH-----------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-cC----CCEEEEEECccccCC
Confidence 97542 1222223346799999999875565555555544332 22 389999999998643
No 244
>PRK12739 elongation factor G; Reviewed
Probab=99.27 E-value=7.2e-11 Score=113.61 Aligned_cols=117 Identities=23% Similarity=0.305 Sum_probs=81.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc---cccc-------------cCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA---FKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~---~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (363)
-++|+|+|+.++|||||++.|+.... .... ....+.|+......+.+ ++..++++||||+.+.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~f 86 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHVDF 86 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHHHH
Confidence 36899999999999999999964211 0000 01344566666666677 7889999999996541
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+ +..+...+|++++|+|+.......+...+..+... + .+.++++||+|....
T Consensus 87 -------~~e----~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~----~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 87 -------TIE----VERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-G----VPRIVFVNKMDRIGA 140 (691)
T ss_pred -------HHH----HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 122 23333466999999999767777777766665542 3 278999999999855
No 245
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.27 E-value=8.2e-11 Score=108.74 Aligned_cols=117 Identities=14% Similarity=0.197 Sum_probs=74.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhc---cccccccc-----------------CCCCCceeeEeEEEEeeCCcEEEEEeCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILG---RKAFKASA-----------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g---~~~~~~~~-----------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG 78 (363)
-.+|+|+|+.|+|||||++.|+. .....+.. ...+.++......+.+ ++..++++||||
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDTPG 88 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDTPG 88 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEECCC
Confidence 47999999999999999999852 11100000 0112233334444555 788899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+. ...... ++..+|++++|+|+...+.......++.... .+ .|+++++||+|....
T Consensus 89 ~~df-------~~~~~~----~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~----iPiiv~iNK~D~~~a 146 (526)
T PRK00741 89 HEDF-------SEDTYR----TLTAVDSALMVIDAAKGVEPQTRKLMEVCRL-RD----TPIFTFINKLDRDGR 146 (526)
T ss_pred chhh-------HHHHHH----HHHHCCEEEEEEecCCCCCHHHHHHHHHHHh-cC----CCEEEEEECCccccc
Confidence 7652 112222 2346799999999875665555555544332 22 289999999998754
No 246
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.26 E-value=1.2e-10 Score=84.83 Aligned_cols=157 Identities=18% Similarity=0.253 Sum_probs=98.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+.+|+|.+|+|||||+-.+... .|.. ....++-.+..+..+.. ++ ..+.|+||.| .+.+....
T Consensus 9 fkllIigDsgVGKssLl~rF~dd-tFs~-sYitTiGvDfkirTv~i-~G~~VkLqIwDtAG-----------qErFrtit 74 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADD-TFSG-SYITTIGVDFKIRTVDI-NGDRVKLQIWDTAG-----------QERFRTIT 74 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhc-cccc-ceEEEeeeeEEEEEeec-CCcEEEEEEeeccc-----------HHHHHHHH
Confidence 35679999999999999877633 3321 11112222344444544 33 3567899998 44566666
Q ss_pred hccCCCccEEEEEeecCCCCC-HHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+.+.|++++|.|+++.-+ ..-+++|+.+...+.. + +-++|.||.|.... ..++.. ..+.+....
T Consensus 75 styyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds-v--~~vLVGNK~d~~~R--rvV~t~-------dAr~~A~~m 142 (198)
T KOG0079|consen 75 STYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS-V--PKVLVGNKNDDPER--RVVDTE-------DARAFALQM 142 (198)
T ss_pred HHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc-c--cceecccCCCCccc--eeeehH-------HHHHHHHhc
Confidence 777889999999999984433 3446677777777653 2 78899999998765 322211 122222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+...+ ++|+++..++...+..|.+.+
T Consensus 143 gie~F------ETSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 143 GIELF------ETSAKENENVEAMFHCITKQV 168 (198)
T ss_pred Cchhe------ehhhhhcccchHHHHHHHHHH
Confidence 32222 567777778888777766654
No 247
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.25 E-value=2.3e-11 Score=87.85 Aligned_cols=127 Identities=18% Similarity=0.154 Sum_probs=84.3
Q ss_pred CCCCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHH
Q 017924 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (363)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 92 (363)
.+.+..+++|+++|-.+||||||++.|.+.+..+..++.|-.+. .+.+....+++++|.-|.. .
T Consensus 11 ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k-----~v~~~g~f~LnvwDiGGqr-----------~ 74 (185)
T KOG0074|consen 11 KSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTK-----KVEYDGTFHLNVWDIGGQR-----------G 74 (185)
T ss_pred cCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceE-----EEeecCcEEEEEEecCCcc-----------c
Confidence 35567889999999999999999999999987555555554333 2333244688999999843 4
Q ss_pred HHHHHhccCCCccEEEEEeecCCC--CCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHH
Q 017924 93 IVKCLGMAKDGIHAFLVVFSVTNR--FSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (363)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~ 159 (363)
|+.++..++..+|.++||+|.++. +..-.....+++...--.. .|++|..|+-|++.. ...++
T Consensus 75 IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~--vpvlIfankQdllta--a~~ee 139 (185)
T KOG0074|consen 75 IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAE--VPVLIFANKQDLLTA--AKVEE 139 (185)
T ss_pred cchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhc--cceeehhhhhHHHhh--cchHH
Confidence 667777888899999999996511 2111122222222211112 288888899888765 44443
No 248
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.25 E-value=2.4e-11 Score=86.06 Aligned_cols=140 Identities=19% Similarity=0.263 Sum_probs=84.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|++||..|+||+||+++|-|... ....+ ..+.+ ++. ..+||||..-. ....-..+..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~----lykKT-------QAve~-~d~--~~IDTPGEy~~-------~~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT----LYKKT-------QAVEF-NDK--GDIDTPGEYFE-------HPRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh----hhccc-------ceeec-cCc--cccCCchhhhh-------hhHHHHHHHH
Confidence 4899999999999999999998875 22111 11222 111 16899995531 1223333444
Q ss_pred cCCCccEEEEEeecCCC---CCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 100 AKDGIHAFLVVFSVTNR---FSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
....++++++|..+.+. |+.+ +...+. +++|-|+||.|+.++ ..+. . .+.++...
T Consensus 61 t~~dadvi~~v~~and~~s~f~p~-------f~~~~~----k~vIgvVTK~DLaed--~dI~----~-----~~~~L~ea 118 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPPG-------FLDIGV----KKVIGVVTKADLAED--ADIS----L-----VKRWLREA 118 (148)
T ss_pred HhhccceeeeeecccCccccCCcc-------cccccc----cceEEEEecccccch--HhHH----H-----HHHHHHHc
Confidence 44578999999987633 3322 111122 268999999999865 2222 1 22334444
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
|...++ ..++.+..++++|++.+...
T Consensus 119 Ga~~IF-----~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 119 GAEPIF-----ETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred CCcceE-----EEeccCcccHHHHHHHHHhh
Confidence 433332 34556678899998877653
No 249
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.25 E-value=2.1e-10 Score=104.20 Aligned_cols=140 Identities=16% Similarity=0.223 Sum_probs=85.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc---------c--------------------ccccCCCCCceeeEeEEEEeeC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA---------F--------------------KASAGSSGVTKTCEMKTTVLKD 67 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~---------~--------------------~~~~~~~~~t~~~~~~~~~~~~ 67 (363)
.+..+|+++|+.++|||||+..|+-... + ....-..++|.+.....+.+ +
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~ 83 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-T 83 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-C
Confidence 3457999999999999999987752110 0 00011244566555555555 6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC-CC------HHHHHHHHHHHHHhccccccce
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FS------QEEETAVHRLPNLFGKNVFDYM 140 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-~~------~~~~~~l~~~~~~~~~~~~~~~ 140 (363)
++.++++||||.. .+...+..+...+|++++|+|+... +. ...+..+..+. ..+-. ++
T Consensus 84 ~~~i~liDtPGh~-----------df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~-~~gi~---~i 148 (447)
T PLN00043 84 KYYCTVIDAPGHR-----------DFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAF-TLGVK---QM 148 (447)
T ss_pred CEEEEEEECCCHH-----------HHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHH-HcCCC---cE
Confidence 7899999999943 3444444455678999999998732 21 22233333322 23332 57
Q ss_pred EEEEeCCCCCCc--chhhHHHHhccCCCchHHHHHHhcC
Q 017924 141 IVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 141 i~v~n~~D~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
++++||+|.... ....+++.+.. ++.++...+
T Consensus 149 IV~vNKmD~~~~~~~~~~~~~i~~e-----i~~~l~~~g 182 (447)
T PLN00043 149 ICCCNKMDATTPKYSKARYDEIVKE-----VSSYLKKVG 182 (447)
T ss_pred EEEEEcccCCchhhhHHHHHHHHHH-----HHHHHHHcC
Confidence 889999997632 12345555555 666666544
No 250
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.23 E-value=8.3e-10 Score=91.47 Aligned_cols=111 Identities=15% Similarity=0.145 Sum_probs=71.6
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhccccccc-ccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
..+...|+|+|.+|+|||||+|.|++...... ....|+ +..... .+..++++||||.. ..+.
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~------i~i~~~-~~~~i~~vDtPg~~----------~~~l 98 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP------ITVVTG-KKRRLTFIECPNDI----------NAMI 98 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc------EEEEec-CCceEEEEeCCchH----------HHHH
Confidence 45568999999999999999999987632110 011111 111222 57788999999732 1222
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccc-eEEEEeCCCCCCc
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLED 152 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~i~v~n~~D~~~~ 152 (363)
.. ...+|++++++|+...+...+...+..+... +. + +++|+||+|....
T Consensus 99 ~~----ak~aDvVllviDa~~~~~~~~~~i~~~l~~~-g~----p~vi~VvnK~D~~~~ 148 (225)
T cd01882 99 DI----AKVADLVLLLIDASFGFEMETFEFLNILQVH-GF----PRVMGVLTHLDLFKK 148 (225)
T ss_pred HH----HHhcCEEEEEEecCcCCCHHHHHHHHHHHHc-CC----CeEEEEEeccccCCc
Confidence 22 2457999999998766666666666655442 32 4 4559999998743
No 251
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.22 E-value=6.3e-10 Score=92.43 Aligned_cols=116 Identities=19% Similarity=0.159 Sum_probs=74.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEE-EeeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|||||||++.+.+... ......|+....... .... ...+.++||+|. .++...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq-----------~~~~~~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF----PEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ-----------EEYRSL 70 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC----cccCCCceeeeeEEEEEEeCCCEEEEEeecCCCH-----------HHHHHH
Confidence 7999999999999999999996654 211222222222211 1112 345779999994 345555
Q ss_pred HhccCCCccEEEEEeecCC--CCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 97 LGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
....+.+.++++++++... +.......++..+....+.. .+++++.||+|+...
T Consensus 71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~ 126 (219)
T COG1100 71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDD--VPILLVGNKIDLFDE 126 (219)
T ss_pred HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCC--ceEEEEecccccccc
Confidence 5566778999999998862 22233334454555554322 389999999999865
No 252
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.22 E-value=5.1e-10 Score=97.03 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=78.1
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccc--c-----------ccCCCC---CceeeEeE----EEEeeCC----cEE
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK--A-----------SAGSSG---VTKTCEMK----TTVLKDG----QVV 71 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~--~-----------~~~~~~---~t~~~~~~----~~~~~~~----~~~ 71 (363)
++....|+|||+.++|||||||.+.++.... . -++++. +++....+ .+..... ..+
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 4567899999999999999999999882111 1 122222 23332222 2222222 578
Q ss_pred EEEeCCCCCCCCCChHHHHHH----------------------HHHHHhccCCCccEEEEEe-ecC------CCCCHHHH
Q 017924 72 NVIDTPGLFDLSAGSEFVGKE----------------------IVKCLGMAKDGIHAFLVVF-SVT------NRFSQEEE 122 (363)
Q Consensus 72 ~l~DtpG~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~l~v~-~~~------~~~~~~~~ 122 (363)
.++||+|+.+.+...+.-... ..+.+ ....+..++|. |.+ ..+...+.
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI---~dhstIgivVtTDgsi~dI~Re~y~~aEe 170 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVI---QEHSTIGVVVTTDGTITDIPREDYVEAEE 170 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHH---HhcCcEEEEEEcCCCccccccccchHHHH
Confidence 899999998754322210111 11111 12557777777 553 35667778
Q ss_pred HHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 123 TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
++++.++.. + +|+++|+|+.|-...
T Consensus 171 ~~i~eLk~~-~----kPfiivlN~~dp~~~ 195 (492)
T TIGR02836 171 RVIEELKEL-N----KPFIILLNSTHPYHP 195 (492)
T ss_pred HHHHHHHhc-C----CCEEEEEECcCCCCc
Confidence 888887764 3 289999999995433
No 253
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.22 E-value=2.1e-10 Score=95.48 Aligned_cols=93 Identities=19% Similarity=0.316 Sum_probs=59.1
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
......+|++||.+++|||||+|.|+|... .......|+-..+..+...++-.+.++|+||+........--++++.
T Consensus 59 ~KsGda~v~lVGfPsvGKStLL~~LTnt~s---eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vl 135 (365)
T COG1163 59 KKSGDATVALVGFPSVGKSTLLNKLTNTKS---EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVL 135 (365)
T ss_pred eccCCeEEEEEcCCCccHHHHHHHHhCCCc---cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceee
Confidence 334557999999999999999999998763 23344444433333333337889999999998653222211112222
Q ss_pred HHHhccCCCccEEEEEeecC
Q 017924 95 KCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~ 114 (363)
...+.+|.+++|+|+.
T Consensus 136 ----sv~R~ADlIiiVld~~ 151 (365)
T COG1163 136 ----SVARNADLIIIVLDVF 151 (365)
T ss_pred ----eeeccCCEEEEEEecC
Confidence 2334667788777764
No 254
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.21 E-value=9.5e-10 Score=100.52 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017924 272 KETTTRLEQQLAKEQAARLRAEEVAQLAE 300 (363)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (363)
+++..+++.+..++...+++++.++++..
T Consensus 473 eqkA~e~~kk~~ke~ta~qe~qael~k~e 501 (1102)
T KOG1924|consen 473 EQKAAELEKKFDKELTARQEAQAELQKHE 501 (1102)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 33445566666666666666666665544
No 255
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.21 E-value=2.5e-09 Score=92.53 Aligned_cols=111 Identities=13% Similarity=0.132 Sum_probs=64.4
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHH-HHHHhccccccceEEEEeC
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHR-LPNLFGKNVFDYMIVVFTG 146 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~i~v~n~ 146 (363)
+..+.|+||+|+.... .. + ...+|.++++.+.. ++.+...+.. +.+. .-++|+||
T Consensus 148 g~d~viieT~Gv~qs~---~~----i-------~~~aD~vlvv~~p~---~gd~iq~~k~gi~E~-------aDIiVVNK 203 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TA----V-------AGMVDFFLLLQLPG---AGDELQGIKKGIMEL-------ADLIVINK 203 (332)
T ss_pred CCCEEEEECCCCccch---hH----H-------HHhCCEEEEEecCC---chHHHHHHHhhhhhh-------hheEEeeh
Confidence 4567899999988521 11 1 12368888887522 2334333222 2222 24789999
Q ss_pred CCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEe-cCCCcccccchhHHHHHHHHHHHHHH
Q 017924 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 147 ~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+|+... ......... +...+.........+ ..+...|+.++.++++|++.|.....
T Consensus 204 aDl~~~--~~a~~~~~e-----l~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 204 ADGDNK--TAARRAAAE-----YRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred hcccch--hHHHHHHHH-----HHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 998865 333444443 444443322111111 23346788889999999999998776
No 256
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.2e-08 Score=92.95 Aligned_cols=128 Identities=23% Similarity=0.335 Sum_probs=83.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE----------------------------------------
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE---------------------------------------- 59 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~---------------------------------------- 59 (363)
-+|+|+|.+++||||++|+++-+....++.. .++.|.
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~g---h~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIG---HTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHhhCccccc---ccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 5999999999999999999975443222111 111100
Q ss_pred ----eEEEEeeCC------cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHH
Q 017924 60 ----MKTTVLKDG------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLP 129 (363)
Q Consensus 60 ----~~~~~~~~~------~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~ 129 (363)
...+.|.++ ..+.++|.||++-. .+...++......+|+++||..+.+.++..++..+....
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~--------se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs 258 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVD--------SELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVS 258 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCc--------hhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhh
Confidence 112233222 24679999998753 344455555556889999999998888888888877665
Q ss_pred HHhccccccceEEEEeCCCCCCcchhhHHHHhcc
Q 017924 130 NLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 130 ~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
.. + .+++|+.||||......+-.++++++
T Consensus 259 ~~--K---pniFIlnnkwDasase~ec~e~V~~Q 287 (749)
T KOG0448|consen 259 EE--K---PNIFILNNKWDASASEPECKEDVLKQ 287 (749)
T ss_pred cc--C---CcEEEEechhhhhcccHHHHHHHHHH
Confidence 53 2 27888899999876533444444443
No 257
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.19 E-value=1.8e-10 Score=85.04 Aligned_cols=157 Identities=19% Similarity=0.218 Sum_probs=98.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee--eEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+++|..-+|||||+=..+ .+.|+..... |.. .....+... ..-.+.+|||.|. +.+...
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~-EnkFn~kHls---TlQASF~~kk~n~ed~ra~L~IWDTAGQ-----------ErfHAL 78 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYV-ENKFNCKHLS---TLQASFQNKKVNVEDCRADLHIWDTAGQ-----------ERFHAL 78 (218)
T ss_pred eEEEEEcCCccchhHHHHHHH-HhhcchhhHH---HHHHHHhhcccccccceeeeeeeeccch-----------Hhhhcc
Confidence 599999999999999986665 4444322110 000 000011110 1235679999993 334444
Q ss_pred HhccCCCccEEEEEeecCCCCC-HHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
-..++++.++.++|+|++++-+ ...+.++..++..+|.++ .++||.||+|+...-....++ .....+.
T Consensus 79 GPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEeeR~Vt~qe---------Ae~YAes 147 (218)
T KOG0088|consen 79 GPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEERQVTRQE---------AEAYAES 147 (218)
T ss_pred CceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHhhhhhHHH---------HHHHHHh
Confidence 4566788999999999985544 334667888888888775 788899999986541111111 2233444
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..|+ .+|++...++.+|++.+-..+
T Consensus 148 vGA~y~------eTSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 148 VGALYM------ETSAKDNVGISELFESLTAKM 174 (218)
T ss_pred hchhhe------ecccccccCHHHHHHHHHHHH
Confidence 455554 567888889999998776543
No 258
>PRK13351 elongation factor G; Reviewed
Probab=99.18 E-value=3.3e-10 Score=109.42 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=78.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccccc---cccc-------------CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAF---KASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~---~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
.-.+|+|+|+.|+|||||++.|+..... .... .....|+......+.+ .+..++++||||..+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcHH
Confidence 3479999999999999999999743210 0000 0133445455555666 788999999999754
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
. ......+...+|++++|+|++..........+..+... + .|+++++||+|....
T Consensus 86 f-----------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-~----~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 F-----------TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-G----IPRLIFINKMDRVGA 140 (687)
T ss_pred H-----------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-C----CCEEEEEECCCCCCC
Confidence 2 11222233467999999999866666666666554432 2 289999999998754
No 259
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=8.5e-10 Score=80.46 Aligned_cols=158 Identities=16% Similarity=0.170 Sum_probs=93.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
++.|+|...+|||||+-.-++... .+ ....++.++-.+..+.-. ....+.++||.|... +......
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSF-t~-afvsTvGidFKvKTvyr~~kRiklQiwDTagqEr-----------yrtiTTa 89 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSF-TS-AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER-----------YRTITTA 89 (193)
T ss_pred eEEEEccCCccchhhhHHhhcccc-cc-ceeeeeeeeEEEeEeeecccEEEEEEEecccchh-----------hhHHHHH
Confidence 899999999999999999886653 11 111222223333332221 123567999998543 3333445
Q ss_pred cCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.+++++++|+++|.++.-+-.. ..+.-.++..+-.++ ++|++.||||+.+. ..+- . +.-..++..+|-
T Consensus 90 yyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~na--qvilvgnKCDmd~e--Rvis----~---e~g~~l~~~LGf 158 (193)
T KOG0093|consen 90 YYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNA--QVILVGNKCDMDSE--RVIS----H---ERGRQLADQLGF 158 (193)
T ss_pred HhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCc--eEEEEecccCCccc--eeee----H---HHHHHHHHHhCh
Confidence 5678999999999883333222 334444444433333 89999999998765 2211 0 112334445454
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.++ +.|++.+-++..+++.+-..+
T Consensus 159 efF------EtSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 159 EFF------ETSAKENINVKQVFERLVDII 182 (193)
T ss_pred HHh------hhcccccccHHHHHHHHHHHH
Confidence 333 556777778888777665554
No 260
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.6e-09 Score=93.48 Aligned_cols=142 Identities=20% Similarity=0.306 Sum_probs=93.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhh---c------------------ccccc--------cccCCCCCceeeEeEEEEeeC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSIL---G------------------RKAFK--------ASAGSSGVTKTCEMKTTVLKD 67 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~---g------------------~~~~~--------~~~~~~~~t~~~~~~~~~~~~ 67 (363)
.+..+++++|+..+|||||+-.|+ | ...|. ...-..++|++.....+.. +
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~ 83 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-D 83 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-C
Confidence 456899999999999999997664 1 11110 0011244565555555555 6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC-------CCHHHHHHHHHHHHHhccccccce
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYM 140 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~ 140 (363)
.+.++++|+||..| +..-+......+|+.++|+++... ..+..+.. ..+....|-+ .+
T Consensus 84 k~~~tIiDaPGHrd-----------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH-~~La~tlGi~---~l 148 (428)
T COG5256 84 KYNFTIIDAPGHRD-----------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH-AFLARTLGIK---QL 148 (428)
T ss_pred CceEEEeeCCchHH-----------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH-HHHHHhcCCc---eE
Confidence 77899999999443 333333455678999999998733 22333333 3344445543 79
Q ss_pred EEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 141 i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
|+++||+|..+.+...+++.... +..++..++-.
T Consensus 149 IVavNKMD~v~wde~rf~ei~~~-----v~~l~k~~G~~ 182 (428)
T COG5256 149 IVAVNKMDLVSWDEERFEEIVSE-----VSKLLKMVGYN 182 (428)
T ss_pred EEEEEcccccccCHHHHHHHHHH-----HHHHHHHcCCC
Confidence 99999999998777788888777 77777676643
No 261
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=3.1e-10 Score=86.84 Aligned_cols=163 Identities=13% Similarity=0.082 Sum_probs=97.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+.+|+++|-.||||||++..|.-...+.. ..|+...+..+.+ .+..++++|.-|... ++..
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~y-kn~~f~vWDvGGq~k-----------~R~l 77 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVEY-KNISFTVWDVGGQEK-----------LRPL 77 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEEE-cceEEEEEecCCCcc-----------cccc
Confidence 4568999999999999999987754443221 3344555556666 688899999999643 3334
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
+..++...+++|||+|.+++..-.+ +..+..+...-. -...+++++.||.|.... -...++-+. +. +-..
T Consensus 78 W~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~-l~~~~llv~aNKqD~~~a--ls~~ei~~~-----L~-l~~l 148 (181)
T KOG0070|consen 78 WKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE-LRNAPLLVFANKQDLPGA--LSAAEITNK-----LG-LHSL 148 (181)
T ss_pred hhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc-cCCceEEEEechhhcccc--CCHHHHHhH-----hh-hhcc
Confidence 4456678899999999873322222 222222221110 012278888999998755 333322222 11 2222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+....++ ..+.+..+.++.+-++.+...+.
T Consensus 149 ~~~~w~i----q~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 149 RSRNWHI----QSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred CCCCcEE----eeccccccccHHHHHHHHHHHHh
Confidence 2222332 23455667888888888877664
No 262
>PTZ00416 elongation factor 2; Provisional
Probab=99.12 E-value=2.6e-10 Score=111.53 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=77.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccC--------------CCCCceeeEeEEEEee---------CCcEEEE
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVLK---------DGQVVNV 73 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~---------~~~~~~l 73 (363)
..-.+|+|+|+.++|||||+++|++......... ..+.|.........+. .++.+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 3446999999999999999999985432111011 1222222222233331 1567899
Q ss_pred EeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCC
Q 017924 74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (363)
Q Consensus 74 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~ 150 (363)
+||||..+. ...+..+...+|++++|+|+...+.......++.+... + .|+++++||+|..
T Consensus 97 iDtPG~~~f-----------~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-~----~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDF-----------SSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-R----IRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhH-----------HHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-C----CCEEEEEEChhhh
Confidence 999997652 22233344578999999998867777777777666543 2 2899999999987
No 263
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.12 E-value=5e-10 Score=98.20 Aligned_cols=131 Identities=19% Similarity=0.203 Sum_probs=84.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+..+++|+|-+++|||||+|.++..+. ...+...|+...+..........+.++||||+.+.-..+..+.+. ...
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradv---evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEm-qsI- 241 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADD---EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEM-QII- 241 (620)
T ss_pred CcCeEEEecCCCCCcHhhccccccccc---ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHH-HHH-
Confidence 457999999999999999999985543 234445555444333322245577799999998864333322221 111
Q ss_pred hccCCCccEEEEEeecC--CCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHH
Q 017924 98 GMAKDGIHAFLVVFSVT--NRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE 158 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~--~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~ 158 (363)
....+--.+++|++|++ ...+..+ ...+..++.+|... ++|+|+||+|.... +.|.
T Consensus 242 TALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK---~~IlvlNK~D~m~~--edL~ 300 (620)
T KOG1490|consen 242 TALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK---VTILVLNKIDAMRP--EDLD 300 (620)
T ss_pred HHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC---ceEEEeecccccCc--cccC
Confidence 11112236789999987 4455444 45667777777654 79999999999977 4444
No 264
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.12 E-value=1.6e-11 Score=112.59 Aligned_cols=128 Identities=16% Similarity=0.084 Sum_probs=73.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee--EeEEEEeeCCcEE----EEEeCCCCCCCCCChHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLKDGQVV----NVIDTPGLFDLSAGSEFVGK 91 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~----~l~DtpG~~~~~~~~~~~~~ 91 (363)
.+-+|+|||+||+|||||++.|+|... +..|.+.... .+.++.+ +...+ +++|...-...... ..
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~----~~~G~v~~g~~v~igyf~Q-~~~~l~~~~t~~d~l~~~~~~~~----e~ 417 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELG----PLSGTVKVGETVKIGYFDQ-HRDELDPDKTVLEELSEGFPDGD----EQ 417 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcc----cCCceEEeCCceEEEEEEe-hhhhcCccCcHHHHHHhhCcccc----HH
Confidence 567999999999999999999988776 3344333322 2333322 11111 12222111110001 23
Q ss_pred HHHHHHhccC-CCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcchhhHHHHhcc
Q 017924 92 EIVKCLGMAK-DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 92 ~~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~~~l~~~~~~ 163 (363)
.++.++..+. .+.++ .-.+. .+|++++.++.+.+.++... |++|+ +||+|..+. +.|++.+..
T Consensus 418 ~~r~~L~~f~F~~~~~---~~~v~-~LSGGEk~Rl~La~ll~~~p---NvLiLDEPTNhLDi~s~--~aLe~aL~~ 484 (530)
T COG0488 418 EVRAYLGRFGFTGEDQ---EKPVG-VLSGGEKARLLLAKLLLQPP---NLLLLDEPTNHLDIESL--EALEEALLD 484 (530)
T ss_pred HHHHHHHHcCCChHHH---hCchh-hcCHhHHHHHHHHHHhccCC---CEEEEcCCCccCCHHHH--HHHHHHHHh
Confidence 3444433222 12222 12233 78899999998888877654 78887 899998766 666666554
No 265
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.10 E-value=7.8e-10 Score=108.46 Aligned_cols=117 Identities=18% Similarity=0.215 Sum_probs=75.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccc--------------cCCCCCceeeEeEEEEee---------------CC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AGSSGVTKTCEMKTTVLK---------------DG 68 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------------~~ 68 (363)
.=++|+|+|+.|+|||||+++|+........ ....+.|.......+.+. ++
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 3469999999999999999998743311000 011222333322233331 25
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCC
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D 148 (363)
..++++||||..+ +...+..+...+|++++|+|+...+....+..++.+... + .++++++||+|
T Consensus 98 ~~inliDtPGh~d-----------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-~----~p~i~~iNK~D 161 (843)
T PLN00116 98 YLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-R----IRPVLTVNKMD 161 (843)
T ss_pred eEEEEECCCCHHH-----------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC-C----CCEEEEEECCc
Confidence 6789999999655 222223333567999999998867777777766665442 2 27899999999
Q ss_pred CC
Q 017924 149 DL 150 (363)
Q Consensus 149 ~~ 150 (363)
..
T Consensus 162 ~~ 163 (843)
T PLN00116 162 RC 163 (843)
T ss_pred cc
Confidence 87
No 266
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=6.9e-09 Score=76.22 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=88.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+++|+|+.|.|||.|+..+. ...|.... +.++-++..-..+.+. ....+.+|||.| .+.++....
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fi-e~kfkDds-sHTiGveFgSrIinVGgK~vKLQIWDTAG-----------QErFRSVtR 76 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFI-ENKFKDDS-SHTIGVEFGSRIVNVGGKTVKLQIWDTAG-----------QERFRSVTR 76 (214)
T ss_pred heeEEeccCCCChhHHHHHHH-Hhhhcccc-cceeeeeecceeeeecCcEEEEEEeeccc-----------HHHHHHHHH
Confidence 489999999999999998887 33443322 2222222222222221 234667999999 345666566
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHH-HHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
.+++++.+.++|.|++++-+-+... +|.-++.+....+ -++++.||.|+...-..... +..+.+.
T Consensus 77 sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nI--vviL~GnKkDL~~~R~Vtfl------------EAs~Faq 142 (214)
T KOG0086|consen 77 SYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNI--VVILCGNKKDLDPEREVTFL------------EASRFAQ 142 (214)
T ss_pred HHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcE--EEEEeCChhhcChhhhhhHH------------HHHhhhc
Confidence 6778899999999998555544433 4444444433321 33445688887644111111 1111111
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
...+.| ..+|+.+++++.+.+-.....
T Consensus 143 Enel~f---lETSa~TGeNVEEaFl~c~~t 169 (214)
T KOG0086|consen 143 ENELMF---LETSALTGENVEEAFLKCART 169 (214)
T ss_pred ccceee---eeecccccccHHHHHHHHHHH
Confidence 122222 256778888888866554443
No 267
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.08 E-value=1.5e-09 Score=89.07 Aligned_cols=123 Identities=16% Similarity=0.152 Sum_probs=69.3
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
||+++|+.|+||||..+.|.+...- .....-+.|.+.....+.......+.+||.||..+..... +.......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p-~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~------~~~~~~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP-RDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY------FNSQREEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G-GGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT------HTCCHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc-hhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc------ccccHHHH
Confidence 6999999999999999999865431 1122223455555555554356689999999987643210 00001112
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHHH-HHHHHh--ccccccceEEEEeCCCCCCc
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLF--GKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~-~~~~~~--~~~~~~~~i~v~n~~D~~~~ 152 (363)
+.+++++|||+|+...--..+...+. .+..+. ..++ ++.+++.|+|++.+
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~--~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNI--KVFVFIHKMDLLSE 126 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT---EEEEEEE-CCCS-H
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCC--eEEEEEeecccCCH
Confidence 35789999999997222333433333 233322 2233 78888999999876
No 268
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=2e-09 Score=95.57 Aligned_cols=163 Identities=20% Similarity=0.263 Sum_probs=107.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccccccc-------------ccCCCCCceeeEeEEEEeeC--CcEEEEEeCCCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA-------------SAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFD 81 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~-------------~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~ 81 (363)
+.=.+++||.+...|||||.+.|+....+.. -.-..++|+..+.....+.+ .+.+++|||||..|
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 4456899999999999999998753221100 01236688888877776632 37889999999888
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHh
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~ 161 (363)
+.. +..+.+ .-++++++|+|+.+..-......+.+..+. + ..+|.|+||+|+-..+-+..+
T Consensus 138 Fs~-------EVsRsl----aac~G~lLvVDA~qGvqAQT~anf~lAfe~-~----L~iIpVlNKIDlp~adpe~V~--- 198 (650)
T KOG0462|consen 138 FSG-------EVSRSL----AACDGALLVVDASQGVQAQTVANFYLAFEA-G----LAIIPVLNKIDLPSADPERVE--- 198 (650)
T ss_pred ccc-------eehehh----hhcCceEEEEEcCcCchHHHHHHHHHHHHc-C----CeEEEeeeccCCCCCCHHHHH---
Confidence 532 333333 346899999999866655555554443332 2 258889999999765333333
Q ss_pred ccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.. +.+++..+....+ ..|++.+.++.++++.|-+-+.
T Consensus 199 ~q-----~~~lF~~~~~~~i------~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 199 NQ-----LFELFDIPPAEVI------YVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred HH-----HHHHhcCCccceE------EEEeccCccHHHHHHHHHhhCC
Confidence 33 4445555544333 4578889999999888776654
No 269
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.07 E-value=3.2e-09 Score=79.01 Aligned_cols=161 Identities=19% Similarity=0.157 Sum_probs=94.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.++.|||.+-+|||||++.++.-. |.. .+.-++-++-.-..+....+. .+.++||.|. +.++...
T Consensus 9 frlivigdstvgkssll~~ft~gk-fae-lsdptvgvdffarlie~~pg~riklqlwdtagq-----------erfrsit 75 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGK-FAE-LSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQ-----------ERFRSIT 75 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCc-ccc-cCCCccchHHHHHHHhcCCCcEEEEEEeeccch-----------HHHHHHH
Confidence 488999999999999999998333 221 222222221111112222333 5679999993 3455555
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+++.-++++|+|++++-+-+. ..+++......+....--+++|.+|+|+.+.-....++ .. .+...
T Consensus 76 ksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EE---------aE-klAa~ 145 (213)
T KOG0091|consen 76 KSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEE---------AE-KLAAS 145 (213)
T ss_pred HHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHH---------HH-HHHHh
Confidence 556667788899999987766444 45666666655522111234567899987541111111 12 22333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
++..++ ++|++.+.++++..+.|..-+
T Consensus 146 hgM~FV-----ETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 146 HGMAFV-----ETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred cCceEE-----EecccCCCcHHHHHHHHHHHH
Confidence 444444 678888889998887665543
No 270
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.05 E-value=4.6e-10 Score=108.39 Aligned_cols=117 Identities=18% Similarity=0.299 Sum_probs=72.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc--------------ccccccCCCCCceeeEeEE----EEeeCCcEEEEEeCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK--------------AFKASAGSSGVTKTCEMKT----TVLKDGQVVNVIDTPGLF 80 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~--------------~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~l~DtpG~~ 80 (363)
-++|+|||+.|+|||||++.|+... .|.........|+...... +.+ ++..++++||||..
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTPG~~ 97 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTPGHV 97 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCCCcc
Confidence 4799999999999999999886321 1111011122233222211 223 56789999999987
Q ss_pred CCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
+.. ..... +...+|++++|+|+...+.......++.+... + .+.++++||+|....
T Consensus 98 ~f~-------~~~~~----al~~aD~~llVvda~~g~~~~t~~~~~~~~~~-~----~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 98 DFG-------GDVTR----AMRAVDGAIVVVCAVEGVMPQTETVLRQALKE-N----VKPVLFINKVDRLIN 153 (720)
T ss_pred ccH-------HHHHH----HHHhcCEEEEEEecCCCCCccHHHHHHHHHHc-C----CCEEEEEEChhcccc
Confidence 632 12222 33467999999998755555555555544321 2 267899999998643
No 271
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.1e-09 Score=82.47 Aligned_cols=166 Identities=17% Similarity=0.160 Sum_probs=100.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc--cccc-cCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA--FKAS-AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~--~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....|+|+|.-+||||||+.++--... |..- ++....|+...+..... .+..+.+||.-|- +.+.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgGQ-----------e~lr 83 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGGQ-----------ESLR 83 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCCh-----------HHHH
Confidence 347899999999999999988742211 1110 11122233333334444 5678889999882 3344
Q ss_pred HHHhccCCCccEEEEEeecCC--CCCHHHHHHHHHHHH---HhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPN---LFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPL 169 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~---~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~ 169 (363)
......+..+|+++|++|+++ ++. .....++.+.. +.|- |++++.||-|.... ....+.-.. +
T Consensus 84 Slw~~yY~~~H~ii~viDa~~~eR~~-~~~t~~~~v~~~E~leg~----p~L~lankqd~q~~--~~~~El~~~-----~ 151 (197)
T KOG0076|consen 84 SLWKKYYWLAHGIIYVIDATDRERFE-ESKTAFEKVVENEKLEGA----PVLVLANKQDLQNA--MEAAELDGV-----F 151 (197)
T ss_pred HHHHHHHHHhceeEEeecCCCHHHHH-HHHHHHHHHHHHHHhcCC----chhhhcchhhhhhh--hhHHHHHHH-----h
Confidence 444455667899999999873 222 22222333222 2222 89999999998755 444433332 3
Q ss_pred HHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
.. .+..+.+.+.|. +.|+..+.++++-+.++...+..+
T Consensus 152 ~~-~e~~~~rd~~~~---pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 152 GL-AELIPRRDNPFQ---PVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hh-hhhcCCccCccc---cchhhhcccHHHHHHHHHHHHhhc
Confidence 32 445556666555 457788899999888877766553
No 272
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=5e-09 Score=91.13 Aligned_cols=159 Identities=20% Similarity=0.256 Sum_probs=113.4
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccc-cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.|+.+|+--.|||||+++++|...-. ......+.|++..+++... .+..+.|+|.||..+ +...+..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~-----------~i~~mia 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPD-----------FISNLLA 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHH-----------HHHHHHh
Confidence 58889999999999999999875311 1233456788888888777 566899999999554 3333434
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
.....|..++|+++++.+.......+..+. ++|.. +.++|+||+|.... ..+++..++ ++....
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iLd-llgi~---~giivltk~D~~d~--~r~e~~i~~--------Il~~l~-- 133 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLILD-LLGIK---NGIIVLTKADRVDE--ARIEQKIKQ--------ILADLS-- 133 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHHH-hcCCC---ceEEEEeccccccH--HHHHHHHHH--------HHhhcc--
Confidence 455789999999997688777777665544 45654 78999999999876 555555554 222222
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+.-......|+..+.++.+|.+.|..+.
T Consensus 134 -l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 134 -LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred -cccccccccccccCCCHHHHHHHHHHhh
Confidence 1222334678888999999999988887
No 273
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.04 E-value=2.7e-09 Score=86.64 Aligned_cols=131 Identities=17% Similarity=0.142 Sum_probs=67.6
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHH---HHhccccccceEEEEeC
Q 017924 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLP---NLFGKNVFDYMIVVFTG 146 (363)
Q Consensus 70 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~i~v~n~ 146 (363)
...+|||||....-.++-. +.-|...+... .+-+++|++|.. +-+...-..-.++- .++..+ .|+|+++||
T Consensus 117 ~~~liDTPGQIE~FtWSAs-GsIIte~lass--~ptvv~YvvDt~-rs~~p~tFMSNMlYAcSilyktk--lp~ivvfNK 190 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSAS-GSIITETLASS--FPTVVVYVVDTP-RSTSPTTFMSNMLYACSILYKTK--LPFIVVFNK 190 (366)
T ss_pred CEEEEcCCCceEEEEecCC-ccchHhhHhhc--CCeEEEEEecCC-cCCCchhHHHHHHHHHHHHHhcc--CCeEEEEec
Confidence 3579999996532111100 11223333222 457888999875 33322222222221 122223 399999999
Q ss_pred CCCCCcchhhHHHHhccCCCchHHHHHHhcCCce---------------EEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC---------------VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 147 ~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.|.... ..+.+|+.. +.. +++.+......| +.--.....|+..+.+..+++..|+..+.+
T Consensus 191 ~Dv~d~--~fa~eWm~D-fE~-FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 191 TDVSDS--EFALEWMTD-FEA-FQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred cccccc--HHHHHHHHH-HHH-HHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 999877 555555543 111 222222111111 000112345677788889998888888776
No 274
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.04 E-value=3.6e-10 Score=88.49 Aligned_cols=120 Identities=16% Similarity=0.232 Sum_probs=62.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEE-EeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...|+|+|++|+|||+|+..|..... . .+..+. ....... ....+..+.+||+||..... ..+...+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~-~--~T~tS~--e~n~~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~~ 70 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKT-V--PTVTSM--ENNIAYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDEL 70 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS------B---S--SEEEECCGSSTCGTCECEEEETT-HCCC-------HHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCc-C--Ceeccc--cCCceEEeecCCCCEEEEEECCCcHHHH-------HHHHHhh
Confidence 35899999999999999999875432 1 111111 1111111 11135678899999976532 1222221
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHh----ccccccceEEEEeCCCCCCc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~i~v~n~~D~~~~ 152 (363)
. ....+.+|+||+|.+ .+..+-...-+.+..++ -.....|++|+.||.|+...
T Consensus 71 ~-~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 71 K-YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp H-HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred h-chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 1 123578999999976 33322223323332222 11223489999999998764
No 275
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.01 E-value=2.1e-09 Score=90.70 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=55.2
Q ss_pred EEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC----------------cEEEEEeCCCCCCCCCC
Q 017924 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~~~~~ 85 (363)
|+|||.+++|||||+|+|+|... ..... ..+|+......+.+.+. ..+.++|+||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~-pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANY-PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccc-cccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 68999999999999999998875 21111 22333444333333221 14889999999864332
Q ss_pred hHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
...++..+... ...+|++++|+++.
T Consensus 79 ~~glg~~fL~~----i~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSH----IREVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHH----HHhCCEEEEEEeCc
Confidence 33344444433 34679999999863
No 276
>PTZ00258 GTP-binding protein; Provisional
Probab=99.00 E-value=3.4e-09 Score=93.49 Aligned_cols=91 Identities=16% Similarity=0.182 Sum_probs=58.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeC----------------CcEEEEEeCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKD----------------GQVVNVIDTPGL 79 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~----------------~~~~~l~DtpG~ 79 (363)
....+|+|||.+|+|||||+|+|++... . ....+ +|.+.....+.+.+ ...+.++||||+
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~--v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL 95 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-P--AENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL 95 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcc-c--ccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence 4557999999999999999999998764 1 22222 23344443333311 224789999999
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
.........+...+... ...+|++++|+++.
T Consensus 96 v~ga~~g~gLg~~fL~~----Ir~aD~il~VVd~f 126 (390)
T PTZ00258 96 VKGASEGEGLGNAFLSH----IRAVDGIYHVVRAF 126 (390)
T ss_pred CcCCcchhHHHHHHHHH----HHHCCEEEEEEeCC
Confidence 85332223344444433 35679999999974
No 277
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.00 E-value=3.9e-09 Score=91.96 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=56.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeCC----------------cEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~~ 82 (363)
.+|+|||.+|+|||||+|+|+|... . ....+ +|+......+.+.+. ..+.++|+||+...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~--v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~ 79 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-E--AANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG 79 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-e--ecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC
Confidence 6899999999999999999998763 1 22222 233443333333121 24789999999763
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
......++..+.. ....+|++++|+++.
T Consensus 80 a~~g~glg~~fL~----~i~~aD~li~VVd~f 107 (364)
T PRK09601 80 ASKGEGLGNQFLA----NIREVDAIVHVVRCF 107 (364)
T ss_pred CChHHHHHHHHHH----HHHhCCEEEEEEeCC
Confidence 3222233434433 335789999999974
No 278
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.99 E-value=3.7e-09 Score=87.97 Aligned_cols=161 Identities=17% Similarity=0.127 Sum_probs=97.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|||-+|||||||||+|++...+.-.-- -.|.+..........+..+.+.||.||...- + ..+...|...+.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drL--FATLDpT~h~a~Lpsg~~vlltDTvGFisdL-P-~~LvaAF~ATLe 253 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRL--FATLDPTLHSAHLPSGNFVLLTDTVGFISDL-P-IQLVAAFQATLE 253 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchh--heeccchhhhccCCCCcEEEEeechhhhhhC-c-HHHHHHHHHHHH
Confidence 37999999999999999999997665332211 1233333333444467788899999987521 1 222333433332
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc---ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK---NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.. ...|.++.|.|+++......+..+.....-+|- ..+.+++=|-||.|.... +...
T Consensus 254 eV-aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~-------~~e~------------ 313 (410)
T KOG0410|consen 254 EV-AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED-------EVEE------------ 313 (410)
T ss_pred HH-hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc-------cCcc------------
Confidence 22 367999999999977776666555444443332 112234445567665543 1111
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.-++....|+..+.+..++++.++..+.
T Consensus 314 ------E~n~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 314 ------EKNLDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ------ccCCccccccccCccHHHHHHHHHHHhh
Confidence 0111234577788899999988877654
No 279
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.98 E-value=1.3e-08 Score=81.91 Aligned_cols=160 Identities=23% Similarity=0.213 Sum_probs=91.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE-EEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
..+|+++|..|+|||+|.-.+.+... .. ....|+...+.. ... ++ ..+.|+||.|.... ..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f-~~---~y~ptied~y~k~~~v-~~~~~~l~ilDt~g~~~~-----------~~ 66 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF-VE---DYDPTIEDSYRKELTV-DGEVCMLEILDTAGQEEF-----------SA 66 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc-cc---ccCCCccccceEEEEE-CCEEEEEEEEcCCCcccC-----------hH
Confidence 36999999999999999977764432 22 122333332222 222 33 35679999994331 22
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHH-HHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+....|++++|++++++-+-.+.. ..+.+....+. ...|+++|.||+|+...-....++ -..+..
T Consensus 67 ~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~~R~V~~ee---------g~~la~ 136 (196)
T KOG0395|consen 67 MRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLERERQVSEEE---------GKALAR 136 (196)
T ss_pred HHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchhccccCHHH---------HHHHHH
Confidence 2222334669999999998555544433 33344232222 224899999999987530011111 122233
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.++..++ +.|++...++.+++..+...+..
T Consensus 137 ~~~~~f~------E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 137 SWGCAFI------ETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred hcCCcEE------EeeccCCcCHHHHHHHHHHHHHh
Confidence 3333333 45666667888888877666543
No 280
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.98 E-value=2.4e-09 Score=78.13 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=89.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+..+.++|--++|||||+|.++.... .- .-..|+....+.+.. ....+.++|.+|.. .+...+.
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~-~e---dmiptvGfnmrk~tk-gnvtiklwD~gGq~-----------rfrsmWe 83 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQY-LE---DMIPTVGFNMRKVTK-GNVTIKLWDLGGQP-----------RFRSMWE 83 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccc-hh---hhcccccceeEEecc-CceEEEEEecCCCc-----------cHHHHHH
Confidence 46889999999999999998873221 11 111233334444443 45677899999944 3555556
Q ss_pred ccCCCccEEEEEeecCC--CCCHHHHHHHHHHHHHhccc--cccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 99 MAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~--~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.+.+++++++|++|+.+ .++.. +.. +..++.+. ...|++++.||.|.... -.-.+.+.+ +. +..
T Consensus 84 rycR~v~aivY~VDaad~~k~~~s-r~E---L~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~r-----mg-L~s 151 (186)
T KOG0075|consen 84 RYCRGVSAIVYVVDAADPDKLEAS-RSE---LHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIER-----MG-LSS 151 (186)
T ss_pred HHhhcCcEEEEEeecCCcccchhh-HHH---HHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHH-----hC-ccc
Confidence 66788999999999872 33322 222 22222222 12389999999998754 111122221 10 111
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
......+-| ..|.++..+++.+++++-+
T Consensus 152 itdREvcC~----siScke~~Nid~~~~Wli~ 179 (186)
T KOG0075|consen 152 ITDREVCCF----SISCKEKVNIDITLDWLIE 179 (186)
T ss_pred cccceEEEE----EEEEcCCccHHHHHHHHHH
Confidence 112222222 3455666778877776654
No 281
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=4.9e-09 Score=99.01 Aligned_cols=118 Identities=23% Similarity=0.285 Sum_probs=85.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhh---cccccccc-------------cCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL---GRKAFKAS-------------AGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLF 80 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~---g~~~~~~~-------------~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~ 80 (363)
.-++|+|+|+.++|||||...|+ |.....+. ...+++|+........| . ++.+++|||||.-
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPGHV 87 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPGHV 87 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCCcc
Confidence 34799999999999999998874 22111111 11255666677777788 6 4999999999988
Q ss_pred CCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
|+ ..++.+.+ .-.|+.++|+|+...........++++.+. .+ |.++++||+|....
T Consensus 88 DF-------t~EV~rsl----rvlDgavvVvdaveGV~~QTEtv~rqa~~~---~v--p~i~fiNKmDR~~a 143 (697)
T COG0480 88 DF-------TIEVERSL----RVLDGAVVVVDAVEGVEPQTETVWRQADKY---GV--PRILFVNKMDRLGA 143 (697)
T ss_pred cc-------HHHHHHHH----HhhcceEEEEECCCCeeecHHHHHHHHhhc---CC--CeEEEEECcccccc
Confidence 85 23444443 345899999998767777777777777664 22 89999999998866
No 282
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=5.2e-09 Score=86.98 Aligned_cols=167 Identities=14% Similarity=0.170 Sum_probs=100.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc-cccccCCCCCceeeEeEEEE--------------e-----------eCCcE
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTV--------------L-----------KDGQV 70 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~-~~~~~~~~~~t~~~~~~~~~--------------~-----------~~~~~ 70 (363)
.+..+|++||+...|||||.++|+|--. .++.......|++..+.... . .--+.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 4568999999999999999999998632 11112222233322221100 0 00135
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCC----HHHHHHHHHHHHHhccccccceEEEEeC
Q 017924 71 VNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS----QEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (363)
Q Consensus 71 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~i~v~n~ 146 (363)
+.|+|.||.. -+...+.....--|+.++|+.++..+. .+....|+ ..|-+ +++++-||
T Consensus 88 VSfVDaPGHe-----------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale----Iigik---~iiIvQNK 149 (415)
T COG5257 88 VSFVDAPGHE-----------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE----IIGIK---NIIIVQNK 149 (415)
T ss_pred EEEeeCCchH-----------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh----hhccc---eEEEEecc
Confidence 7899999932 344444444445589999998874433 33333333 33433 89999999
Q ss_pred CCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 147 ~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
+|+.+. +...+.-++ +++++ .+..-.-......|+..+.+++.|++.|.+.+...
T Consensus 150 IDlV~~--E~AlE~y~q-----Ik~Fv---kGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 150 IDLVSR--ERALENYEQ-----IKEFV---KGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred cceecH--HHHHHHHHH-----HHHHh---cccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 999976 433333222 33332 33322222445778888999999999999987653
No 283
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.96 E-value=1.8e-09 Score=84.47 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=39.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (363)
...+|+++|.+|+|||||+|+|.|......+...+. |..... +. .+..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~-T~~~~~--~~--~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGE-TKVWQY--IT--LMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCe-eEeEEE--EE--cCCCEEEEECcCC
Confidence 356899999999999999999998876444444432 322222 11 2345789999995
No 284
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.95 E-value=1.8e-08 Score=83.30 Aligned_cols=108 Identities=19% Similarity=0.128 Sum_probs=65.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc-cccccccCCCCCceeeEeEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR-KAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
+-..|+|+|+.++|||||+|.|+|. ..|........+|........... .+..+.++||+|+++...........+.
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 3368999999999999999999988 356555544455554443333331 2568899999999986543301111111
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (363)
..... -.++++|.... .....+...+..+.+
T Consensus 86 ~l~~l---lss~~i~n~~~--~~~~~~~~~l~~~~~ 116 (224)
T cd01851 86 ALATL---LSSVLIYNSWE--TILGDDLAALMGLLK 116 (224)
T ss_pred HHHHH---HhCEEEEeccC--cccHHHHHHHHHHHH
Confidence 11111 23677776664 344555555555544
No 285
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.94 E-value=2.6e-09 Score=103.50 Aligned_cols=117 Identities=18% Similarity=0.315 Sum_probs=73.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccccc--------------CCCCCceeeEeEEEEe--e-CCcEEEEEeCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA--------------GSSGVTKTCEMKTTVL--K-DGQVVNVIDTPGLFD 81 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~--~-~~~~~~l~DtpG~~~ 81 (363)
-.+|+|+|+.++|||||+++|+......... ..++.|+......+.| . .+..++|+||||+.+
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 3689999999999999999986332100000 0112233222222222 1 356789999999877
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
. ..++... ...+|++++|+|+...........++.+... +. +.++++||+|...
T Consensus 100 f-------~~~~~~~----l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~~----~~iv~iNK~D~~~ 153 (731)
T PRK07560 100 F-------GGDVTRA----MRAVDGAIVVVDAVEGVMPQTETVLRQALRE-RV----KPVLFINKVDRLI 153 (731)
T ss_pred h-------HHHHHHH----HHhcCEEEEEEECCCCCCccHHHHHHHHHHc-CC----CeEEEEECchhhc
Confidence 3 2233332 3456999999998766666666666654432 22 6789999999763
No 286
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=7.8e-08 Score=69.80 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=74.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhh-cccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL-GRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~-g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+.+|+.+|-.+|||||++-.|. ++.. ....|+...+..+.+ .+..++++|.-|.. .|+..
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~------~~ipTvGFnvetVty-kN~kfNvwdvGGqd-----------~iRpl 77 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSV------TTIPTVGFNVETVTY-KNVKFNVWDVGGQD-----------KIRPL 77 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCc------ccccccceeEEEEEe-eeeEEeeeeccCch-----------hhhHH
Confidence 46899999999999999996665 3332 122344445555666 67788999998843 46666
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcccccc--ceEEEEeCCCCCCc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD--YMIVVFTGGDDLED 152 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~i~v~n~~D~~~~ 152 (363)
+..++.+..++|||+|...+ ..-+.++- .+...++...+. +++|+.||-|+...
T Consensus 78 WrhYy~gtqglIFV~Dsa~~-dr~eeAr~-ELh~ii~~~em~~~~~LvlANkQDlp~A 133 (180)
T KOG0071|consen 78 WRHYYTGTQGLIFVVDSADR-DRIEEARN-ELHRIINDREMRDAIILILANKQDLPDA 133 (180)
T ss_pred HHhhccCCceEEEEEeccch-hhHHHHHH-HHHHHhCCHhhhcceEEEEecCcccccc
Confidence 66777889999999997634 32233332 233333332111 55566799998654
No 287
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.92 E-value=2.8e-08 Score=83.82 Aligned_cols=156 Identities=13% Similarity=0.172 Sum_probs=103.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc--c---------cc---c-----------------cCCCCCceeeEeEEEEee
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA--F---------KA---S-----------------AGSSGVTKTCEMKTTVLK 66 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~--~---------~~---~-----------------~~~~~~t~~~~~~~~~~~ 66 (363)
+-+|++-+|...-||||||-.|+-... | .+ + .-..++|++.-+.++..
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT- 83 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST- 83 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc-
Confidence 347999999999999999977652110 0 00 0 11245677777777665
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeC
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~ 146 (363)
..+.+.+.||||. +++.+-+.....-+|..++++|+...+-...++ -..+..++|-. ++++.+||
T Consensus 84 ~KRkFIiADTPGH-----------eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR-Hs~I~sLLGIr---hvvvAVNK 148 (431)
T COG2895 84 EKRKFIIADTPGH-----------EQYTRNMATGASTADLAILLVDARKGVLEQTRR-HSFIASLLGIR---HVVVAVNK 148 (431)
T ss_pred ccceEEEecCCcH-----------HHHhhhhhcccccccEEEEEEecchhhHHHhHH-HHHHHHHhCCc---EEEEEEee
Confidence 7888999999993 455555555566789999999985343333333 34556666654 89999999
Q ss_pred CCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHH
Q 017924 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQV 197 (363)
Q Consensus 147 ~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (363)
+|+..-+.+.++++... +..+...++.....+ .+.|+..+.++
T Consensus 149 mDLvdy~e~~F~~I~~d-----y~~fa~~L~~~~~~~---IPiSAl~GDNV 191 (431)
T COG2895 149 MDLVDYSEEVFEAIVAD-----YLAFAAQLGLKDVRF---IPISALLGDNV 191 (431)
T ss_pred ecccccCHHHHHHHHHH-----HHHHHHHcCCCcceE---EechhccCCcc
Confidence 99997766788877777 666777766544322 24455555444
No 288
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.91 E-value=2.1e-09 Score=81.21 Aligned_cols=117 Identities=20% Similarity=0.130 Sum_probs=71.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
++++|||..++||||+|...+.. .|.. ....++.++........ ..+..+.+|||.|.. ++.....
T Consensus 21 iK~vivGng~VGKssmiqryCkg-ifTk-dykktIgvdflerqi~v~~Edvr~mlWdtagqe-----------EfDaItk 87 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKG-IFTK-DYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQE-----------EFDAITK 87 (246)
T ss_pred EEEEEECCCccchHHHHHHHhcc-cccc-ccccccchhhhhHHHHhhHHHHHHHHHHhccch-----------hHHHHHH
Confidence 79999999999999999988732 2211 11111111111111111 012344578888843 4444444
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..++++.+.++|++.+++.+-+. ..+.+.+..-++. .|.++|-||+|++++
T Consensus 88 Ayyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 88 AYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVED 139 (246)
T ss_pred HHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhHh
Confidence 56678899999999875655333 3344455554443 299999999999866
No 289
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.90 E-value=1.1e-09 Score=83.99 Aligned_cols=63 Identities=33% Similarity=0.400 Sum_probs=36.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccc-----cCCCCCce-eeEeEEEEeeCCcEEEEEeCCCCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS-----AGSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~-----~~~~~~t~-~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 85 (363)
+.+++|+|++|||||||||.|.+...+..+ ...|..|+ ....+. . .+ ...++||||+.+....
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~--l-~~-g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFP--L-PD-GGYIIDTPGFRSFGLW 103 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEE--E-TT-SEEEECSHHHHT--GC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEe--c-CC-CcEEEECCCCCccccc
Confidence 369999999999999999999988543321 12233333 222222 2 22 3459999998876543
No 290
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2e-08 Score=90.05 Aligned_cols=140 Identities=21% Similarity=0.309 Sum_probs=90.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhh---ccc------------------ccc--------cccCCCCCceeeEeEEEEeeCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL---GRK------------------AFK--------ASAGSSGVTKTCEMKTTVLKDG 68 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~---g~~------------------~~~--------~~~~~~~~t~~~~~~~~~~~~~ 68 (363)
.....+++|+..+|||||+-.|+ |.. .|. ......++|.......+.. ..
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes-~~ 254 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES-KS 254 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec-Cc
Confidence 45789999999999999997764 111 110 0012244555555555554 67
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecC-CCC----C-HHHHHHHHHHHHHhccccccceEE
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRF----S-QEEETAVHRLPNLFGKNVFDYMIV 142 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~-~~~----~-~~~~~~l~~~~~~~~~~~~~~~i~ 142 (363)
..++|+|+||..|+. -..+ .....+|+.++|+|++ +.| . .+..+....+...+|-. .++|
T Consensus 255 ~~~tliDaPGhkdFi------~nmi-----~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~---qliv 320 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFI------PNMI-----SGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGIS---QLIV 320 (603)
T ss_pred eeEEEecCCCccccc------hhhh-----ccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcc---eEEE
Confidence 789999999966632 1122 2334678889999876 112 1 23333344455556644 7999
Q ss_pred EEeCCCCCCcchhhHHHHhccCCCchHHHHH-HhcC
Q 017924 143 VFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCD 177 (363)
Q Consensus 143 v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~ 177 (363)
++||+|.++.+...++++... +..++ +.|+
T Consensus 321 aiNKmD~V~Wsq~RF~eIk~~-----l~~fL~~~~g 351 (603)
T KOG0458|consen 321 AINKMDLVSWSQDRFEEIKNK-----LSSFLKESCG 351 (603)
T ss_pred EeecccccCccHHHHHHHHHH-----HHHHHHHhcC
Confidence 999999998877888888777 77666 5554
No 291
>PRK13768 GTPase; Provisional
Probab=98.89 E-value=8.8e-09 Score=86.81 Aligned_cols=130 Identities=18% Similarity=0.123 Sum_probs=68.9
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCC
Q 017924 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (363)
Q Consensus 70 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~ 149 (363)
.+.++||||....... ......+.+.+.... .+++++++|+.+..+..+.....++..........++++|+||+|.
T Consensus 98 ~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence 5789999996543211 222334444444322 7899999998744445444333333211100112389999999999
Q ss_pred CCcchhhHHHHhccCCC-------------------chHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 150 LEDHEKTLEDFLGHECP-------------------KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 150 ~~~~~~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
... ..++.......+ ..+.+.+...+..+ .....|+.++.++.+|++.|.+.+
T Consensus 175 ~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~----~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 175 LSE--EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPV----RVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred cCc--hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCC----cEEEEECCCCcCHHHHHHHHHHHc
Confidence 866 333322221000 00111122222111 123456677788999999888776
No 292
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.88 E-value=9.5e-09 Score=84.93 Aligned_cols=122 Identities=15% Similarity=0.047 Sum_probs=66.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee-------------EeEEEEee--CCcEEEEEeCCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-------------EMKTTVLK--DGQVVNVIDTPGLFDLS 83 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~-------------~~~~~~~~--~~~~~~l~DtpG~~~~~ 83 (363)
+..++|+|+||||||||+++|+|-.. +..|.+..+. .+.++.+. ....+++.|...++...
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~----p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p 103 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLK----PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYP 103 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC----CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCc
Confidence 57999999999999999999998765 4444443332 22333221 12355666665443211
Q ss_pred -------CChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 84 -------AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 84 -------~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
.+..+ .+.+..++... +..-+....-+.+++++++++-..+.+.... +++++ +|++|....
T Consensus 104 ~~~~~~~~~~~D-~~~v~~aL~~~----~~~~la~r~~~~LSGGerQrv~iArALaQ~~---~iLLLDEPTs~LDi~~Q 174 (258)
T COG1120 104 HLGLFGRPSKED-EEIVEEALELL----GLEHLADRPVDELSGGERQRVLIARALAQET---PILLLDEPTSHLDIAHQ 174 (258)
T ss_pred ccccccCCCHhH-HHHHHHHHHHh----CcHHHhcCcccccChhHHHHHHHHHHHhcCC---CEEEeCCCccccCHHHH
Confidence 11111 11122222111 1111111111378899998887777766543 56666 788887643
No 293
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.88 E-value=2.2e-07 Score=89.05 Aligned_cols=132 Identities=19% Similarity=0.187 Sum_probs=69.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee--EeEEEEeeCC-cEEEEEeCCCCCCC-CCChHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLKDG-QVVNVIDTPGLFDL-SAGSEFVGKEI 93 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~~~-~~~~l~DtpG~~~~-~~~~~~~~~~~ 93 (363)
++.+|+|+|+||||||||+++|+|... +..|.++... .+.++.. .. ..+..-.++ +... ..........+
T Consensus 337 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~----p~~G~i~~~~~~~igy~~Q-~~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 410 (638)
T PRK10636 337 PGSRIGLLGRNGAGKSTLIKLLAGELA----PVSGEIGLAKGIKLGYFAQ-HQLEFLRADESP-LQHLARLAPQELEQKL 410 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCeEEECCCEEEEEecC-cchhhCCccchH-HHHHHHhCchhhHHHH
Confidence 467999999999999999999999875 5555544321 2222211 10 000000010 0000 00000001112
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcchhhHHHHhcc
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~~~l~~~~~~ 163 (363)
...+... +...-..-..+ ..++++++.++.+...+.... +++|+ +|++|.... ..+.+++..
T Consensus 411 ~~~L~~~--~l~~~~~~~~~-~~LSgGekqRl~La~~l~~~p---~lLlLDEPt~~LD~~~~--~~l~~~L~~ 475 (638)
T PRK10636 411 RDYLGGF--GFQGDKVTEET-RRFSGGEKARLVLALIVWQRP---NLLLLDEPTNHLDLDMR--QALTEALID 475 (638)
T ss_pred HHHHHHc--CCChhHhcCch-hhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHHHHHHHH
Confidence 2222111 11000000122 378999999999888877653 56666 899998765 677766655
No 294
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=2.2e-08 Score=91.81 Aligned_cols=12 Identities=8% Similarity=0.401 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 017924 199 QLLSLVNSVIVQ 210 (363)
Q Consensus 199 ~l~~~l~~~~~~ 210 (363)
++++.+...++.
T Consensus 386 ~~f~lL~n~vkd 397 (1102)
T KOG1924|consen 386 EVFELLANTVKD 397 (1102)
T ss_pred HHHHHHHHhhhh
Confidence 333444444433
No 295
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.87 E-value=2.7e-08 Score=80.81 Aligned_cols=147 Identities=18% Similarity=0.170 Sum_probs=75.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-------EEEeeCCc---EEEEEeCCCCC--CCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-------TTVLKDGQ---VVNVIDTPGLF--DLSAG 85 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-------~~~~~~~~---~~~l~DtpG~~--~~~~~ 85 (363)
++-.|+|+|++|||||||+|.|+|-.. ++.|.+....... .+.+.+.. -.++.|...+. .....
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~----p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~ 103 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEK----PTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKS 103 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccc
Confidence 457999999999999999999999887 5555544433221 11110111 11233333222 11112
Q ss_pred hHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcchhhHHHHhc
Q 017924 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~~~l~~~~~ 162 (363)
..+.......++... +... +-...-+.+|++.++++...+.+.... .++++ +..+|..+. ..+.+.+.
T Consensus 104 ~~e~~~~a~~~L~~V--gL~~--~~~~~P~qLSGGMrQRVaiARAL~~~P---~lLLlDEPFgALDalTR--~~lq~~l~ 174 (248)
T COG1116 104 KAEARERAKELLELV--GLAG--FEDKYPHQLSGGMRQRVAIARALATRP---KLLLLDEPFGALDALTR--EELQDELL 174 (248)
T ss_pred hHhHHHHHHHHHHHc--CCcc--hhhcCccccChHHHHHHHHHHHHhcCC---CEEEEcCCcchhhHHHH--HHHHHHHH
Confidence 222222233332211 1111 111122478888998888888876553 34444 456665544 55554433
Q ss_pred cCCCchHHHHHHhcCCceEEecC
Q 017924 163 HECPKPLKEILQLCDNRCVLFDN 185 (363)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~ 185 (363)
+++...+...+++.|
T Consensus 175 --------~lw~~~~~TvllVTH 189 (248)
T COG1116 175 --------RLWEETRKTVLLVTH 189 (248)
T ss_pred --------HHHHhhCCEEEEEeC
Confidence 355555554444433
No 296
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.85 E-value=2e-09 Score=95.65 Aligned_cols=127 Identities=17% Similarity=0.126 Sum_probs=72.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCC-------CCCCCCChHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPG-------LFDLSAGSEFVG 90 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG-------~~~~~~~~~~~~ 90 (363)
.-+|++||+||+|||||++.++|... +..|.+..........+. +...-.-.|-.. +.+ ... .
T Consensus 416 ~srvAlVGPNG~GKsTLlKl~~gdl~----p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~--~~~---~ 486 (614)
T KOG0927|consen 416 DSRVALVGPNGAGKSTLLKLITGDLQ----PTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPD--EKE---L 486 (614)
T ss_pred ccceeEecCCCCchhhhHHHHhhccc----cccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccc--cch---H
Confidence 45999999999999999999999877 555554443333222110 100000111111 111 112 2
Q ss_pred HHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE----EeCCCCCCcchhhHHHHhcc
Q 017924 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v----~n~~D~~~~~~~~l~~~~~~ 163 (363)
.++...+..+ +..+-.-+.... .++.+++.++-.....+.. |-+++ +||+|.... ..+.+++..
T Consensus 487 e~~r~ilgrf--gLtgd~q~~p~~-~LS~Gqr~rVlFa~l~~kq----P~lLlLDEPtnhLDi~ti--d~laeaiNe 554 (614)
T KOG0927|consen 487 EEMRSILGRF--GLTGDAQVVPMS-QLSDGQRRRVLFARLAVKQ----PHLLLLDEPTNHLDIETI--DALAEAINE 554 (614)
T ss_pred HHHHHHHHHh--CCCccccccchh-hcccccchhHHHHHHHhcC----CcEEEecCCCcCCCchhH--HHHHHHHhc
Confidence 2333333333 344444445555 8888999888777766654 44444 799998766 555555554
No 297
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.85 E-value=6.8e-09 Score=81.87 Aligned_cols=57 Identities=32% Similarity=0.391 Sum_probs=39.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (363)
...+|+|+|.+|+|||||||+|+|......+...| .|...+.. .. +..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg-~T~~~~~~--~~--~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPG-VTKSMQEV--HL--DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCC-eEcceEEE--Ee--CCCEEEEECcCC
Confidence 34799999999999999999999987644444333 23322222 22 346789999995
No 298
>PRK12740 elongation factor G; Reviewed
Probab=98.85 E-value=2.4e-08 Score=96.52 Aligned_cols=111 Identities=23% Similarity=0.313 Sum_probs=71.3
Q ss_pred EcCCCCchHHHHHHhhccccc---cccc-------------CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHH
Q 017924 25 LGRTGNGKSATGNSILGRKAF---KASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (363)
Q Consensus 25 vG~~g~GKSTli~~l~g~~~~---~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~ 88 (363)
||+.|+|||||++.|+..... .... ...+.|+......+.+ ++..++++||||..+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------ 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence 699999999999999533211 0000 0133455555555666 7889999999996541
Q ss_pred HHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
...... +...+|++++|+|++..........+..+... + .++++|+||+|....
T Consensus 74 -~~~~~~----~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-~----~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 74 -TGEVER----ALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-G----VPRIIFVNKMDRAGA 127 (668)
T ss_pred -HHHHHH----HHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 122222 23367999999998755555555555544432 2 288999999998754
No 299
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.82 E-value=8.8e-08 Score=91.93 Aligned_cols=134 Identities=15% Similarity=0.084 Sum_probs=67.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee--EeEEEEeeCCc----EEEEEeCCCCCCCCCChHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLKDGQ----VVNVIDTPGLFDLSAGSEFVG 90 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~~~~----~~~l~DtpG~~~~~~~~~~~~ 90 (363)
.++.+|+|+|+||||||||+++|+|... +..|.+.... .+.++.. ... ..++.|...+...........
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~----p~~G~i~~~~~~~i~y~~q-~~~~l~~~~tv~e~l~~~~~~~~~~~~~ 417 (635)
T PRK11147 343 QRGDKIALIGPNGCGKTTLLKLMLGQLQ----ADSGRIHCGTKLEVAYFDQ-HRAELDPEKTVMDNLAEGKQEVMVNGRP 417 (635)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC----CCCcEEEECCCcEEEEEeC-cccccCCCCCHHHHHHhhcccccccchH
Confidence 3456999999999999999999999865 4445443321 1222211 000 011111111000000000001
Q ss_pred HHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcchhhHHHHhcc
Q 017924 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~~~l~~~~~~ 163 (363)
..+...+....-..+. .-..+ ..++++++.++.+...+.... +++|+ +|++|.... ..+.+.+..
T Consensus 418 ~~~~~~l~~~~l~~~~--~~~~~-~~LSgGekqRl~la~al~~~p---~lLlLDEPt~~LD~~~~--~~l~~~l~~ 485 (635)
T PRK11147 418 RHVLGYLQDFLFHPKR--AMTPV-KALSGGERNRLLLARLFLKPS---NLLILDEPTNDLDVETL--ELLEELLDS 485 (635)
T ss_pred HHHHHHHHhcCCCHHH--HhChh-hhCCHHHHHHHHHHHHHhcCC---CEEEEcCCCCCCCHHHH--HHHHHHHHh
Confidence 1112222111000000 00012 378999999999888877653 56666 799987755 566655554
No 300
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.82 E-value=4e-07 Score=78.98 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
....|+|+|.+|+|||||++.|.+
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999864
No 301
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.82 E-value=9.7e-09 Score=80.14 Aligned_cols=57 Identities=30% Similarity=0.445 Sum_probs=39.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (363)
...+|+|+|.+|+|||||+|+|++...+. ...+..++..... +.. +..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~--~~~~~~~t~~~~~-~~~--~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK--VGNVPGTTTSQQE-VKL--DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc--ccCCCCcccceEE-EEe--cCCEEEEECCCC
Confidence 45799999999999999999999876533 2333334333322 222 356889999995
No 302
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=3.9e-08 Score=83.34 Aligned_cols=126 Identities=17% Similarity=0.319 Sum_probs=73.1
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC------C------------------------
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD------G------------------------ 68 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~------~------------------------ 68 (363)
+.-|+++|....||||||+-|++++. .+ .-.|+..+......+.+.+ |
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dy-pg-~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDY-PG-LRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCC-Cc-cccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 36899999999999999999997653 21 1111111111111110000 0
Q ss_pred -----------cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccc
Q 017924 69 -----------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKN 135 (363)
Q Consensus 69 -----------~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~ 135 (363)
..+++|||||+....-..-...-.+...+..+..++|.|++++|+. .++-++ .+.+.. +.|.+
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~h-KLDIsdEf~~vi~a---LkG~E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAH-KLDISDEFKRVIDA---LKGHE 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechh-hccccHHHHHHHHH---hhCCc
Confidence 1368999999875321100001123334444556899999999987 665444 334443 33433
Q ss_pred cccceEEEEeCCCCCCc
Q 017924 136 VFDYMIVVFTGGDDLED 152 (363)
Q Consensus 136 ~~~~~i~v~n~~D~~~~ 152 (363)
+.+-||+||.|.+..
T Consensus 212 --dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 212 --DKIRVVLNKADQVDT 226 (532)
T ss_pred --ceeEEEeccccccCH
Confidence 267899999999977
No 303
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.79 E-value=5.1e-08 Score=87.55 Aligned_cols=170 Identities=17% Similarity=0.223 Sum_probs=98.7
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCC--CCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS--GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....||+|||.-|+||||||=+|+...- ...+... .+++- ..+ .......+++||....+ ....+.+++.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef-~~~VP~rl~~i~IP---adv-tPe~vpt~ivD~ss~~~---~~~~l~~Eir 78 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEF-VDAVPRRLPRILIP---ADV-TPENVPTSIVDTSSDSD---DRLCLRKEIR 78 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhc-cccccccCCccccC---Ccc-CcCcCceEEEecccccc---hhHHHHHHHh
Confidence 3458999999999999999999996553 2111111 11211 111 11344577999985333 1222333443
Q ss_pred HHHhccCCCccEEEEEeecCC--CCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHH----HhccCCCch
Q 017924 95 KCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED----FLGHECPKP 168 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~----~~~~~~~~~ 168 (363)
.+|++.++...++ .+..-...||=+++..+|.....|+|+|.||+|........++. .+..
T Consensus 79 --------kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~----- 145 (625)
T KOG1707|consen 79 --------KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIA----- 145 (625)
T ss_pred --------hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHH-----
Confidence 5688888887662 34455567788888888776777999999999987652222222 2221
Q ss_pred HHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCH
Q 017924 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD 218 (363)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 218 (363)
+.+ ++.| ...|++...++.+++..-.+.+-..-+..|..
T Consensus 146 f~E-iEtc----------iecSA~~~~n~~e~fYyaqKaVihPt~PLyda 184 (625)
T KOG1707|consen 146 FAE-IETC----------IECSALTLANVSELFYYAQKAVIHPTSPLYDA 184 (625)
T ss_pred hHH-HHHH----------HhhhhhhhhhhHhhhhhhhheeeccCcccccc
Confidence 111 1111 24566666677777666555554433444443
No 304
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=2.6e-07 Score=82.69 Aligned_cols=119 Identities=18% Similarity=0.183 Sum_probs=75.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc-cccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...|+|||++|+||||||++|+..-. +......|++|+... ..++++|+.+|. | ...+....
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsg-------K~RRiTflEcp~--D--------l~~miDva 131 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSG-------KTRRITFLECPS--D--------LHQMIDVA 131 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeec-------ceeEEEEEeChH--H--------HHHHHhHH
Confidence 35788999999999999999985432 111223344443221 457888999983 2 12233222
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
. =+|.+++++|+.-.+..+....|..+..+ |- ..++-|+||+|+.... ..|....++
T Consensus 132 K----IaDLVlLlIdgnfGfEMETmEFLnil~~H-Gm---PrvlgV~ThlDlfk~~-stLr~~KKr 188 (1077)
T COG5192 132 K----IADLVLLLIDGNFGFEMETMEFLNILISH-GM---PRVLGVVTHLDLFKNP-STLRSIKKR 188 (1077)
T ss_pred H----hhheeEEEeccccCceehHHHHHHHHhhc-CC---CceEEEEeecccccCh-HHHHHHHHH
Confidence 2 24889999998766666666666665553 32 2688899999998652 345544443
No 305
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.78 E-value=6e-08 Score=86.67 Aligned_cols=89 Identities=19% Similarity=0.140 Sum_probs=53.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe--------------------eC---CcEEEEEeC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--------------------KD---GQVVNVIDT 76 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~l~Dt 76 (363)
.+|+|||.+|+|||||+|+|++... ..... ...|.+........ .+ ...+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y-~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANY-PFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCC-CCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 4899999999999999999997753 11111 11222222222110 01 245789999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
||+.........+...+... ...+|++++|+++.
T Consensus 80 aGl~~ga~~g~glg~~fL~~----ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDD----LRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHHH----HHHCCEEEEEEeCC
Confidence 99865322222233344333 45679999999985
No 306
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.78 E-value=1.2e-08 Score=82.59 Aligned_cols=58 Identities=28% Similarity=0.305 Sum_probs=37.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccc------ccCCCCCceeeEeEEEEeeCCcEEEEEeCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (363)
+.+++|+|.+|+|||||||+|.+...... ..+..+.|+.... .+.. +..+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~-~~~~--~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLI-KIPL--GNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeE-EEec--CCCCEEEeCcCC
Confidence 36899999999999999999997653221 1222223332222 2222 225789999996
No 307
>PRK12288 GTPase RsgA; Reviewed
Probab=98.78 E-value=2.1e-08 Score=87.95 Aligned_cols=62 Identities=24% Similarity=0.366 Sum_probs=40.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCC-----CCCce-eeEeEEEEeeCCcEEEEEeCCCCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~-----~~~t~-~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 85 (363)
..++|+|.+|+|||||||+|+|......+..+ |..|+ ...++.+. .+ ..|+||||+......
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~--~~--~~liDTPGir~~~l~ 273 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP--HG--GDLIDSPGVREFGLW 273 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec--CC--CEEEECCCCCcccCC
Confidence 36899999999999999999988654333222 22333 33333331 12 249999999876543
No 308
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.74 E-value=2.8e-08 Score=76.15 Aligned_cols=65 Identities=31% Similarity=0.370 Sum_probs=42.1
Q ss_pred cCCCCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
..|+.....+++++|.+|+|||||+|+|+|..........+ .|... ..+.. + ..++++||||+..
T Consensus 76 ~iSa~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~-~~~~~--~~~~~-~-~~~~i~DtpG~~~ 140 (141)
T cd01857 76 FFSALKENATIGLVGYPNVGKSSLINALVGKKKVSVSATPG-KTKHF--QTIFL-T-PTITLCDCPGLVF 140 (141)
T ss_pred EEEecCCCcEEEEECCCCCCHHHHHHHHhCCCceeeCCCCC-cccce--EEEEe-C-CCEEEEECCCcCC
Confidence 34444444599999999999999999999887533222222 22222 22333 2 2578999999753
No 309
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=9.5e-08 Score=91.55 Aligned_cols=44 Identities=16% Similarity=0.079 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcchhhHHHHhcc
Q 017924 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~~~l~~~~~~ 163 (363)
..++++++.++.+...+.... .++++ +|++|.... .++.+++..
T Consensus 148 ~~LSgGerqRv~LA~aL~~~P---~lLLLDEPtn~LD~~~~--~~L~~~L~~ 194 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALICRS---DLLLLDEPTNHLDLDAV--IWLEKWLKS 194 (638)
T ss_pred hhcCHHHHHHHHHHHHHccCC---CEEEEcCCCCcCCHHHH--HHHHHHHHh
Confidence 378999999999998887653 45555 799998755 666666554
No 310
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=5.9e-07 Score=65.18 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=70.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+..|||.-|+|||.|+..++.. .|..+. +.++.++.....+.++ ....+.+|||.| .+.++....
T Consensus 12 fkyiiigdmgvgkscllhqftek-kfmadc-phtigvefgtriievsgqkiklqiwdtag-----------qerfravtr 78 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEK-KFMADC-PHTIGVEFGTRIIEVSGQKIKLQIWDTAG-----------QERFRAVTR 78 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHH-HHhhcC-CcccceecceeEEEecCcEEEEEEeeccc-----------HHHHHHHHH
Confidence 46778999999999999998844 343322 2233333333344442 234677999998 344555555
Q ss_pred ccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
..++++.+.+.|.|++.+-+-... .++.-.+.+-.... -++++.||.|+..
T Consensus 79 syyrgaagalmvyditrrstynhlsswl~dar~ltnpnt--~i~lignkadle~ 130 (215)
T KOG0097|consen 79 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT--VIFLIGNKADLES 130 (215)
T ss_pred HHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCce--EEEEecchhhhhh
Confidence 667788899999999834333332 23333333333221 3445569988753
No 311
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.73 E-value=6.3e-08 Score=83.40 Aligned_cols=66 Identities=26% Similarity=0.333 Sum_probs=45.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~ 88 (363)
...+|+|||.+|+|||||+|+|+|......+...+ +|...+ .+.. +..+.++||||+......+.+
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g-~T~~~~--~~~~--~~~~~l~DtPGi~~~~~~~~~ 185 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPG-VTKAQQ--WIKL--GKGLELLDTPGILWPKLEDQE 185 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCC-eEEEEE--EEEe--CCcEEEEECCCcCCCCCCcHH
Confidence 45799999999999999999999987643333333 333332 2222 346789999999876544443
No 312
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.73 E-value=8.1e-08 Score=75.75 Aligned_cols=116 Identities=23% Similarity=0.221 Sum_probs=77.1
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.++++|||..++|||+|+-..+- ..|. .....|+... ...+...++. .+.++||.|..+.+ .++
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~-~~fp---~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYD--------rlR- 70 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTT-NAFP---EEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYD--------RLR- 70 (198)
T ss_pred eeEEEEECCCCcCceEEEEEecc-CcCc---ccccCeEEccceEEEEecCCCEEEEeeeecCCCcccc--------ccc-
Confidence 37999999999999999987763 3333 2222333222 2233331243 56799999977642 121
Q ss_pred HHhccCCCccEEEEEeecCCCCCHH--HHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQE--EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..++...|+|++++++.++.+-. ...++-.+..++.. + |+|+|.+|.|+..+
T Consensus 71 --plsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~-v--piiLVGtk~DLr~d 124 (198)
T KOG0393|consen 71 --PLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN-V--PIILVGTKADLRDD 124 (198)
T ss_pred --ccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC-C--CEEEEeehHHhhhC
Confidence 34788999999999987454443 34566677776643 3 99999999998844
No 313
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.73 E-value=1.2e-06 Score=64.73 Aligned_cols=119 Identities=22% Similarity=0.188 Sum_probs=75.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhh-cccccccccCCCCCcee-eEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL-GRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~-g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
..++|+|+|.-++|||++|.-|+ |.... ...-..|++ ..+..+...++ ..+.|.||.|+.+. ..++
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~---~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~-------~~eL 77 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVP---GTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG-------QQEL 77 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCC---CCccccchhhheeEeeecCCChhheEEEeecccccCc-------hhhh
Confidence 45799999999999999997654 54431 111222332 22233333222 46789999998763 1234
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc---ccccceEEEEeCCCCCCc
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK---NVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~i~v~n~~D~~~~ 152 (363)
.+... .-+|++++|.+. .+.+...+++++++.+.+ ....+++++.|+.|....
T Consensus 78 prhy~---q~aDafVLVYs~---~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 78 PRHYF---QFADAFVLVYSP---MDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP 133 (198)
T ss_pred hHhHh---ccCceEEEEecC---CCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence 44322 235899999874 456677778887776533 122388899999998755
No 314
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.73 E-value=5.3e-08 Score=80.16 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|||+||||||||+++|+|-.. +..|.+.+
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~----p~~G~i~~ 63 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLK----PSSGEIKI 63 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc----CCcceEEE
Confidence 446999999999999999999999765 55555443
No 315
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.72 E-value=1e-07 Score=82.56 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=51.8
Q ss_pred EEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe---------------------e--CCcEEEEEeCCC
Q 017924 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---------------------K--DGQVVNVIDTPG 78 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~---------------------~--~~~~~~l~DtpG 78 (363)
|+|||.+|+|||||+|+|++... ....... .|....+....+ . ....+.++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pf-tT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPF-TTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCC-ccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 68999999999999999997653 2111111 222222221111 0 224688999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
+.........+...+.. ....+|++++|+|+.
T Consensus 79 lv~ga~~~~glg~~fL~----~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKFLD----DLRDADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHHHH----HHHHCCEEEEEEeCC
Confidence 85422112223333333 345779999999986
No 316
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.72 E-value=1.4e-07 Score=82.53 Aligned_cols=116 Identities=20% Similarity=0.372 Sum_probs=81.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc-cccc-----------c--cCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK-AFKA-----------S--AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~-~~~~-----------~--~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 85 (363)
.+|+||.+...|||||++.|+.+. .|.. . .-..++|+-.+...+.| ++..++++||||.-|++.
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFGG- 83 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFGG- 83 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCccc-
Confidence 689999999999999999997553 2211 1 12355666666667777 889999999999888643
Q ss_pred hHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
+..+.+. -+|.+++++|+....-...+..++...+. |- +-|+|+||+|....
T Consensus 84 ------EVERvl~----MVDgvlLlVDA~EGpMPQTrFVlkKAl~~-gL----~PIVVvNKiDrp~A 135 (603)
T COG1217 84 ------EVERVLS----MVDGVLLLVDASEGPMPQTRFVLKKALAL-GL----KPIVVINKIDRPDA 135 (603)
T ss_pred ------hhhhhhh----hcceEEEEEEcccCCCCchhhhHHHHHHc-CC----CcEEEEeCCCCCCC
Confidence 3444333 45899999998745555566666555443 22 56788899998754
No 317
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.71 E-value=6.4e-08 Score=81.24 Aligned_cols=64 Identities=34% Similarity=0.413 Sum_probs=40.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccc----c-CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS----A-GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~----~-~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (363)
.+...+++|.+|+|||||+|+|.+......+ . ..|..|++. ...+.+ .+ .-.++|||||.....
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~-~~l~~l-~~-gG~iiDTPGf~~~~l 231 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTH-VELFPL-PG-GGWIIDTPGFRSLGL 231 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccce-EEEEEc-CC-CCEEEeCCCCCccCc
Confidence 4468999999999999999999986543221 1 133334322 222222 22 223899999987543
No 318
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.70 E-value=2.4e-07 Score=73.33 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=29.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
.++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~ 58 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI----PNGDNDEW 58 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC----CCCcEEEE
Confidence 4567999999999999999999999876 55555443
No 319
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.70 E-value=2.8e-06 Score=82.52 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+++|+|+||+|||||+++|+|.
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 68999999999999999999877
No 320
>PRK12289 GTPase RsgA; Reviewed
Probab=98.69 E-value=4.5e-08 Score=85.86 Aligned_cols=60 Identities=27% Similarity=0.343 Sum_probs=38.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCC-----CCCce-eeEeEEEEeeCCcEEEEEeCCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~-----~~~t~-~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (363)
..++|+|.+|+|||||||+|++......+..+ |..|+ ....+ ....+ ..|+||||+....
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~--~l~~g--~~liDTPG~~~~~ 238 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELF--ELPNG--GLLADTPGFNQPD 238 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEE--ECCCC--cEEEeCCCccccc
Confidence 46899999999999999999987654332222 22233 33222 22122 2699999987643
No 321
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.69 E-value=1.4e-07 Score=78.28 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999999865
No 322
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=9.1e-07 Score=76.19 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=55.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeC-----------------CcEEEEEeCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKD-----------------GQVVNVIDTPGLF 80 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~-----------------~~~~~l~DtpG~~ 80 (363)
..+++|||.+++|||||+|+|+.... .....+ +|++.....+...+ ...+.|+|..|+-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a---~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV 78 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGA---EIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLV 78 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCc---cccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccC
Confidence 36899999999999999999996652 122222 34333333222211 1246799999986
Q ss_pred CCCCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
.......-++.++...+ +.+|+++.|+++.
T Consensus 79 ~GAs~GeGLGNkFL~~I----RevdaI~hVVr~f 108 (372)
T COG0012 79 KGASKGEGLGNKFLDNI----REVDAIIHVVRCF 108 (372)
T ss_pred CCcccCCCcchHHHHhh----hhcCeEEEEEEec
Confidence 54333344555565544 4678999988754
No 323
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=2.6e-07 Score=69.33 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=69.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+++++|-.|||||||++.|-....-..-++..+.+....+ .+-.++.+|.-|. .+.++....
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~I------g~m~ftt~DLGGH-----------~qArr~wkd 83 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSI------GGMTFTTFDLGGH-----------LQARRVWKD 83 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHhee------cCceEEEEccccH-----------HHHHHHHHH
Confidence 79999999999999999999644332222444443333333 5566778898883 233334444
Q ss_pred cCCCccEEEEEeecC--CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 100 AKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
++..+|++++++|+. +++.+ .+..+..+...-. -...|++|+.||+|....
T Consensus 84 yf~~v~~iv~lvda~d~er~~e-s~~eld~ll~~e~-la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 84 YFPQVDAIVYLVDAYDQERFAE-SKKELDALLSDES-LATVPFLILGNKIDIPYA 136 (193)
T ss_pred HHhhhceeEeeeehhhHHHhHH-HHHHHHHHHhHHH-HhcCcceeecccccCCCc
Confidence 556789999999875 23322 2222222222110 022389999999998765
No 324
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=8.5e-08 Score=71.11 Aligned_cols=157 Identities=16% Similarity=0.151 Sum_probs=87.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe-e-------CC--cEEEEEeCCCCCCCCCChHHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-K-------DG--QVVNVIDTPGLFDLSAGSEFVG 90 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~-------~~--~~~~l~DtpG~~~~~~~~~~~~ 90 (363)
+.+.+|.+|+|||||+-..+. ..|+..-. .++-++.....+.+ . .+ ..+.+|||.| .
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD-~~F~~qFI-sTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG-----------Q 77 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTD-GKFNTQFI-STVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG-----------Q 77 (219)
T ss_pred HHHhhccCCCCceEEEEEecC-CcccceeE-EEeecccccceEEEeccCCCCCCcceEEEEeeecccc-----------H
Confidence 567789999999999976652 22221100 00111111111111 0 11 2456899998 3
Q ss_pred HHHHHHHhccCCCccEEEEEeecCCCCC-HHHHHHHHHHHHHh-ccccccceEEEEeCCCCCCcchhhHHHHhccCCCch
Q 017924 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP 168 (363)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~l~~~~~~~-~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~ 168 (363)
+.++.....++..+-++++++|+++.-+ .+.+.++..++.+. ... .-++++.||+|+... ..+.+ ..
T Consensus 78 ERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~--PDivlcGNK~DL~~~--R~Vs~-------~q 146 (219)
T KOG0081|consen 78 ERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCEN--PDIVLCGNKADLEDQ--RVVSE-------DQ 146 (219)
T ss_pred HHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCC--CCEEEEcCccchhhh--hhhhH-------HH
Confidence 4455555556677889999999973333 34455666665542 221 146778899998744 22211 12
Q ss_pred HHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
..++....+..|+. +|+..+.++.+..+.+-.+
T Consensus 147 a~~La~kyglPYfE------TSA~tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 147 AAALADKYGLPYFE------TSACTGTNVEKAVELLLDL 179 (219)
T ss_pred HHHHHHHhCCCeee------eccccCcCHHHHHHHHHHH
Confidence 44566777777774 5566666666655554443
No 325
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1.1e-07 Score=69.42 Aligned_cols=163 Identities=18% Similarity=0.134 Sum_probs=93.5
Q ss_pred CCCccEEEEEcCCCCchHHHHHHh-hcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSI-LGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l-~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
++.+.+|.++|--|+||+|++-.+ .|... .. ..|....+..+.+ .+..+.++|.-|-.. ++
T Consensus 15 ~e~e~rililgldGaGkttIlyrlqvgevv-----tt-kPtigfnve~v~y-KNLk~~vwdLggqtS-----------ir 76 (182)
T KOG0072|consen 15 PEREMRILILGLDGAGKTTILYRLQVGEVV-----TT-KPTIGFNVETVPY-KNLKFQVWDLGGQTS-----------IR 76 (182)
T ss_pred CccceEEEEeeccCCCeeEEEEEcccCccc-----cc-CCCCCcCcccccc-ccccceeeEccCccc-----------cc
Confidence 456689999999999999987444 22221 11 1121222223333 566777888887443 33
Q ss_pred HHHhccCCCccEEEEEeecC--CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
-.+..++...+++|||+|.+ ++++........++.+---.+. .++++.||.|.... ....+.+.. ++
T Consensus 77 PyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a--~llv~anKqD~~~~--~t~~E~~~~-----L~-- 145 (182)
T KOG0072|consen 77 PYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHA--KLLVFANKQDYSGA--LTRSEVLKM-----LG-- 145 (182)
T ss_pred HHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCc--eEEEEeccccchhh--hhHHHHHHH-----hC--
Confidence 34444567889999999976 3344333334444433211111 46677899998765 443343332 11
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+....++.+. ....|+.++.+++..++++.+.++.
T Consensus 146 l~~Lk~r~~~---Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 146 LQKLKDRIWQ---IVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred hHHHhhheeE---EEeeccccccCCcHHHHHHHHHHhc
Confidence 1112222211 2356788889999999998887653
No 326
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.65 E-value=3.7e-07 Score=90.01 Aligned_cols=103 Identities=15% Similarity=0.112 Sum_probs=70.3
Q ss_pred chHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC-----------------cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 31 GKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 31 GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
+||||++.|.+... ...-.|++|.....+.+..... ..++|+||||... +
T Consensus 473 ~KTtLLD~iR~t~v--~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~-----------F 539 (1049)
T PRK14845 473 HNTTLLDKIRKTRV--AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA-----------F 539 (1049)
T ss_pred ccccHHHHHhCCCc--ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH-----------H
Confidence 49999999998876 3334567777666655544211 1378999999543 2
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
..........+|++++|+|+++.+.......+..+... + .|+++++||+|+..
T Consensus 540 ~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-~----iPiIVViNKiDL~~ 592 (1049)
T PRK14845 540 TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-K----TPFVVAANKIDLIP 592 (1049)
T ss_pred HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-C----CCEEEEEECCCCcc
Confidence 22222344568999999999866777777666655542 2 28999999999863
No 327
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.65 E-value=4.8e-07 Score=69.47 Aligned_cols=35 Identities=31% Similarity=0.316 Sum_probs=28.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~ 59 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE----PDEGIVTW 59 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC----CCceEEEE
Confidence 456899999999999999999999875 44454433
No 328
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.65 E-value=8.3e-08 Score=68.90 Aligned_cols=157 Identities=15% Similarity=0.134 Sum_probs=91.6
Q ss_pred EEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 23 ~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+++|.+++|||.|+-... ...|..+..-.++.++-....+.. ++ ..+.+|||.| .+.++......
T Consensus 1 mllgds~~gktcllir~k-dgafl~~~fistvgid~rnkli~~-~~~kvklqiwdtag-----------qerfrsvt~ay 67 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFK-DGAFLAGNFISTVGIDFRNKLIDM-DDKKVKLQIWDTAG-----------QERFRSVTHAY 67 (192)
T ss_pred CccccCccCceEEEEEec-cCceecCceeeeeeeccccceecc-CCcEEEEEEeeccc-----------hHHHhhhhHhh
Confidence 378999999999874332 111211111111222212222222 32 3567999999 34566666667
Q ss_pred CCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
++.+|+++++.|+.++.+-+. +.++..+.+.-...+ .++++.||+|.... ..+..+. -..+.+..+..
T Consensus 68 yrda~allllydiankasfdn~~~wlsei~ey~k~~v--~l~llgnk~d~a~e------r~v~~dd---g~kla~~y~ip 136 (192)
T KOG0083|consen 68 YRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAV--ALMLLGNKCDLAHE------RAVKRDD---GEKLAEAYGIP 136 (192)
T ss_pred hcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhH--hHhhhccccccchh------hccccch---HHHHHHHHCCC
Confidence 789999999999987777544 567778877654444 67788999998643 1111101 11222332332
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+. .+|++++.+++..+-.|.+-+.
T Consensus 137 fm------etsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 137 FM------ETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ce------eccccccccHhHHHHHHHHHHH
Confidence 22 5677888888776666555443
No 329
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.65 E-value=4.2e-07 Score=72.27 Aligned_cols=27 Identities=33% Similarity=0.359 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999765
No 330
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.64 E-value=9.4e-07 Score=79.03 Aligned_cols=122 Identities=16% Similarity=0.209 Sum_probs=69.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhh------cccccccccCC-C----------CCceeeEeEEEEe----------------
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGS-S----------GVTKTCEMKTTVL---------------- 65 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~------g~~~~~~~~~~-~----------~~t~~~~~~~~~~---------------- 65 (363)
...|+++|.+|+||||++..|+ |.......... + .......++....
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4699999999999999998886 33221111100 0 0000111111100
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEe
Q 017924 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (363)
Q Consensus 66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n 145 (363)
..+..+.||||+|... .+.....++...... ..++.+++|+|+. .........+.+....+ ..-+|+|
T Consensus 180 ~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~--~~p~e~lLVlda~--~Gq~a~~~a~~F~~~~~-----~~g~IlT 247 (429)
T TIGR01425 180 KENFDIIIVDTSGRHK---QEDSLFEEMLQVAEA--IQPDNIIFVMDGS--IGQAAEAQAKAFKDSVD-----VGSVIIT 247 (429)
T ss_pred hCCCCEEEEECCCCCc---chHHHHHHHHHHhhh--cCCcEEEEEeccc--cChhHHHHHHHHHhccC-----CcEEEEE
Confidence 0145778999999765 344556666665432 2568889999875 22223333333333222 5668899
Q ss_pred CCCCCCc
Q 017924 146 GGDDLED 152 (363)
Q Consensus 146 ~~D~~~~ 152 (363)
|+|....
T Consensus 248 KlD~~ar 254 (429)
T TIGR01425 248 KLDGHAK 254 (429)
T ss_pred CccCCCC
Confidence 9998755
No 331
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.3e-07 Score=85.66 Aligned_cols=128 Identities=15% Similarity=0.031 Sum_probs=74.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe----------EEEEeeCCcEEEEEeC----CCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM----------KTTVLKDGQVVNVIDT----PGLFDLS 83 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~----------~~~~~~~~~~~~l~Dt----pG~~~~~ 83 (363)
++.+++|||++|||||||++.|+|... ++.|.+++...- ..+.|..++.+.+-+| ..+....
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~----~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~ 421 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLA----PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPD 421 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCC----CCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCc
Confidence 457999999999999999999999876 455544443211 1112222333323322 2333434
Q ss_pred CChHHHHHHHHHHHh-ccCCCccEEEEEe-ecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 84 AGSEFVGKEIVKCLG-MAKDGIHAFLVVF-SVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~-~~~~~~~~~l~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
.++.++.+.+...-. ......+++-.++ +.+..+++++..++...+.+.... +++++ +.|+|..++
T Consensus 422 ~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~---~l~llDEpTA~LD~etE 492 (559)
T COG4988 422 ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPA---SLLLLDEPTAHLDAETE 492 (559)
T ss_pred CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCC---CEEEecCCccCCCHhHH
Confidence 445554444333221 1111133333322 344689999999999888877653 56666 788887655
No 332
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.64 E-value=1.5e-07 Score=80.69 Aligned_cols=64 Identities=25% Similarity=0.300 Sum_probs=43.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCCh
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS 86 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 86 (363)
...+|+|||.+|+|||||+|+|+|......+...+ .|...+ .+.. +..+.++||||+......+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g-~T~~~~--~~~~--~~~~~l~DtPG~~~~~~~~ 180 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPG-VTKGQQ--WIKL--SDGLELLDTPGILWPKFED 180 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCC-eecceE--EEEe--CCCEEEEECCCcccCCCCc
Confidence 45789999999999999999999876533333333 233322 2222 3457899999996654433
No 333
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.64 E-value=4.6e-08 Score=84.26 Aligned_cols=125 Identities=16% Similarity=0.147 Sum_probs=67.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe--eCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
++..++|+|+||||||||+++|+|... ++.|.+.+...-..-.. ......++.+.+.+... .+-.+....+..
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~----p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~-lT~~e~l~~~~~ 104 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLK----PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPE-LTVRENLEFFAR 104 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcC----CCceEEEEcCEeCccCHHHHHhheEEEccCCCCCcc-ccHHHHHHHHHH
Confidence 346899999999999999999999887 56665554332211100 01223456677764432 222222222221
Q ss_pred HHhcc----CCCccEEEEEe------e--cCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCC
Q 017924 96 CLGMA----KDGIHAFLVVF------S--VTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLE 151 (363)
Q Consensus 96 ~~~~~----~~~~~~~l~v~------~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~ 151 (363)
..... ...++-++-.+ + + ..++.+.++.+.....+++.. .++++ ++.+|-..
T Consensus 105 l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-~~lS~G~kqrl~ia~aL~~~P---~lliLDEPt~GLDp~~ 171 (293)
T COG1131 105 LYGLSKEEAEERIEELLELFGLEDKANKKV-RTLSGGMKQRLSIALALLHDP---ELLILDEPTSGLDPES 171 (293)
T ss_pred HhCCChhHHHHHHHHHHHHcCCchhhCcch-hhcCHHHHHHHHHHHHHhcCC---CEEEECCCCcCCCHHH
Confidence 11100 00000011000 1 2 368889999999888888763 34443 56666543
No 334
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=9.3e-07 Score=74.51 Aligned_cols=168 Identities=16% Similarity=0.200 Sum_probs=93.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc---ccccccc--CCCCCceeeEeEEEEee--------CCcEEEEEeCCCCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR---KAFKASA--GSSGVTKTCEMKTTVLK--------DGQVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~---~~~~~~~--~~~~~t~~~~~~~~~~~--------~~~~~~l~DtpG~~~~~~~ 85 (363)
+.+++|+|+..+|||||.++|... ..|...+ ...++|.+.....+... ....++++|.||...
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas---- 82 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS---- 82 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH----
Confidence 389999999999999999998632 2233222 22334444443333221 123579999999543
Q ss_pred hHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc-c-hhhHHHHhcc
Q 017924 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-H-EKTLEDFLGH 163 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~-~-~~~l~~~~~~ 163 (363)
+.+.+.....-.|..++|+|+........-..+-.-..++. +.++|+||+|...+ . ...++...++
T Consensus 83 -------LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~-----klvvvinkid~lpE~qr~ski~k~~kk 150 (522)
T KOG0461|consen 83 -------LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCK-----KLVVVINKIDVLPENQRASKIEKSAKK 150 (522)
T ss_pred -------HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhcc-----ceEEEEeccccccchhhhhHHHHHHHH
Confidence 33333333345689999999863333333333332233332 68999999998755 1 1233333333
Q ss_pred CCCchHHHHHHhcCCceEEecCCCcccccch----hHHHHHHHHHHHHHH
Q 017924 164 ECPKPLKEILQLCDNRCVLFDNKTKDEAKGT----EQVRQLLSLVNSVIV 209 (363)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~~ 209 (363)
++..++..+-+- .......++..+ ..+.+|.+.+...+-
T Consensus 151 -----~~KtLe~t~f~g--~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 151 -----VRKTLESTGFDG--NSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred -----HHHHHHhcCcCC--CCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 444444432110 001123344444 778888887776553
No 335
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.63 E-value=6.6e-08 Score=81.08 Aligned_cols=60 Identities=25% Similarity=0.273 Sum_probs=39.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccC-----CCCCce-eeEeEEEEeeCCcEEEEEeCCCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~-----~~~~t~-~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (363)
..++++|.+|+|||||||.|.+......+.. .|..|+ ....+.. .+ ..++||||+.....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~~--~~liDtPG~~~~~l 186 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---HG--GLIADTPGFNEFGL 186 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---CC--cEEEeCCCccccCC
Confidence 5899999999999999999998754332211 122333 3333332 22 26999999987554
No 336
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.62 E-value=1.8e-07 Score=79.26 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457999999999999999999999865
No 337
>PRK00098 GTPase RsgA; Reviewed
Probab=98.62 E-value=1.4e-07 Score=81.68 Aligned_cols=61 Identities=30% Similarity=0.329 Sum_probs=38.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccC-----CCCCceeeEeEEEEeeCCcEEEEEeCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (363)
+..++|+|++|+|||||+|+|+|......+.. .|..|+.. ...+.. .+ ...++||||+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~-~~~~~~-~~-~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTH-VELYDL-PG-GGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCccccc-EEEEEc-CC-CcEEEECCCcCcc
Confidence 45899999999999999999998765332211 12223321 122222 21 2369999998753
No 338
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=9.1e-08 Score=83.27 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=66.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee--CCcEEEEEeCCCCC---CCCCChHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLF---DLSAGSEFVGKEIV 94 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~---~~~~~~~~~~~~~~ 94 (363)
-+|+|||+||+|||||++.|+|... +..|............+. .+..++--.||--+ .++...++ .+
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~----P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~----AR 685 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLD----PNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQE----AR 685 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCC----CCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHH----HH
Confidence 4999999999999999999999987 555544433333332221 12233333333100 01111222 22
Q ss_pred HHHhccC--CCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcchhhHHHHh
Q 017924 95 KCLGMAK--DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFL 161 (363)
Q Consensus 95 ~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~~~l~~~~ 161 (363)
.++..+. ..+|.|-+ . .++++.+.++.+....++.. -++|+ +|.+|+.+. ..|.+.+
T Consensus 686 K~LG~fGL~sHAHTiki----k-dLSGGQKaRValaeLal~~P---DvlILDEPTNNLDIESI--DALaEAI 747 (807)
T KOG0066|consen 686 KQLGTFGLASHAHTIKI----K-DLSGGQKARVALAELALGGP---DVLILDEPTNNLDIESI--DALAEAI 747 (807)
T ss_pred HHhhhhhhhhccceEee----e-ecCCcchHHHHHHHHhcCCC---CEEEecCCCCCcchhhH--HHHHHHH
Confidence 2222221 12343333 2 56788888888777767653 24444 677887655 4444333
No 339
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.61 E-value=3.7e-07 Score=73.01 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999865
No 340
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.61 E-value=1.6e-07 Score=80.84 Aligned_cols=60 Identities=32% Similarity=0.367 Sum_probs=38.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccC-----CCCCceeeEeEEEEeeCCcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (363)
.+++++|++|+|||||||+|+|......+.. .|..|+.. ...+.. .+ ...++||||+...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~-~~~~~~-~~-~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTH-RELFPL-PG-GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccce-EEEEEc-CC-CCEEEECCCCCcc
Confidence 6899999999999999999998765332211 12222222 122222 21 2369999999653
No 341
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.61 E-value=2.3e-07 Score=76.56 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999999765
No 342
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.60 E-value=3.3e-07 Score=76.90 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999999865
No 343
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.60 E-value=2.6e-07 Score=77.11 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 567999999999999999999999865
No 344
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.60 E-value=2.2e-07 Score=74.93 Aligned_cols=149 Identities=12% Similarity=0.122 Sum_probs=79.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEE-----EeeCCcEEEEEeCCCCCCCCCChHHHH--
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-----VLKDGQVVNVIDTPGLFDLSAGSEFVG-- 90 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~l~DtpG~~~~~~~~~~~~-- 90 (363)
++.+++|||++|||||||.++|+|-.. ++.|.++.......- .......+++-|--+-..+..+-+++.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~----p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~E 107 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK----PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSE 107 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC----CCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhh
Confidence 567999999999999999999999887 555655554421111 011233444444444333222211111
Q ss_pred -----------HHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcchhh
Q 017924 91 -----------KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKT 156 (363)
Q Consensus 91 -----------~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~~~ 156 (363)
+.+...+... +.+.-++ ...-+.++++++.++...+.+.-.. .++|+ ++.+|..-- .
T Consensus 108 pl~~~~~~~~~~~i~~~L~~V--gL~~~~l-~R~P~eLSGGQ~QRiaIARAL~~~P---klLIlDEptSaLD~siQ--a- 178 (252)
T COG1124 108 PLRPHGLSKSQQRIAELLDQV--GLPPSFL-DRRPHELSGGQRQRIAIARALIPEP---KLLILDEPTSALDVSVQ--A- 178 (252)
T ss_pred hhccCCccHHHHHHHHHHHHc--CCCHHHH-hcCchhcChhHHHHHHHHHHhccCC---CEEEecCchhhhcHHHH--H-
Confidence 1122222111 1111111 1122478999999999998886552 34443 455554321 2
Q ss_pred HHHHhccCCCchHHHHHHhcCCceEEecCC
Q 017924 157 LEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (363)
Q Consensus 157 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (363)
+.++- +.++-+..+..|+++.++
T Consensus 179 --~Ilnl-----L~~l~~~~~lt~l~IsHd 201 (252)
T COG1124 179 --QILNL-----LLELKKERGLTYLFISHD 201 (252)
T ss_pred --HHHHH-----HHHHHHhcCceEEEEeCc
Confidence 23333 444556666677776665
No 345
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.59 E-value=1.5e-07 Score=88.76 Aligned_cols=121 Identities=19% Similarity=0.106 Sum_probs=68.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee------------EeEEEEeeCCcEEEEEeCC----CCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC------------EMKTTVLKDGQVVNVIDTP----GLFD 81 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~------------~~~~~~~~~~~~~~l~Dtp----G~~~ 81 (363)
++.+|+|+|++|||||||++.|+|... +..|.+..+. .+.++ .+..+.+-+|. -++.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~----p~~G~I~i~g~~i~~~~~~lr~~i~~V---~Q~~~lF~~TI~eNI~~g~ 432 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLD----PLQGEVTLDGVSVSSLQDELRRRISVF---AQDAHLFDTTVRDNLRLGR 432 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCEEhhhHHHHHHhheEEE---ccCcccccccHHHHHhccC
Confidence 567999999999999999999998876 5556555433 12222 12222222222 2222
Q ss_pred CCCChHHHHHHHHHH-----HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCC
Q 017924 82 LSAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDL 150 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~ 150 (363)
...+++++.+.+... +.....+.|..+ .+.+.++++++++++...+.++... +++++ +..+|..
T Consensus 433 ~~~~~e~i~~al~~a~l~~~i~~lp~GldT~i--ge~G~~LSGGQrQRiaiARall~~~---~iliLDE~TSaLD~~ 504 (529)
T TIGR02868 433 PDATDEELWAALERVGLADWLRSLPDGLDTVL--GEGGARLSGGERQRLALARALLADA---PILLLDEPTEHLDAG 504 (529)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCcccccchh--ccccCcCCHHHHHHHHHHHHHhcCC---CEEEEeCCcccCCHH
Confidence 223444444333321 111112223322 2233479999999999999988754 56665 5566644
No 346
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.59 E-value=4.5e-07 Score=74.36 Aligned_cols=107 Identities=19% Similarity=0.159 Sum_probs=53.8
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHH-HHHHHhccccccceEEEEeCC
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFGKNVFDYMIVVFTGG 147 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~i~v~n~~ 147 (363)
+.+.|+.|.|.+.. .-++. .-+|.+++|.... .+.+.+.++ -+.++ .-++|+||.
T Consensus 122 ~D~IiiETVGvGQs-------E~~I~-------~~aD~~v~v~~Pg---~GD~iQ~~KaGimEi-------aDi~vVNKa 177 (266)
T PF03308_consen 122 FDVIIIETVGVGQS-------EVDIA-------DMADTVVLVLVPG---LGDEIQAIKAGIMEI-------ADIFVVNKA 177 (266)
T ss_dssp -SEEEEEEESSSTH-------HHHHH-------TTSSEEEEEEESS---TCCCCCTB-TTHHHH--------SEEEEE--
T ss_pred CCEEEEeCCCCCcc-------HHHHH-------HhcCeEEEEecCC---CccHHHHHhhhhhhh-------ccEEEEeCC
Confidence 44678899998762 11121 2358888887653 111111111 12222 457888999
Q ss_pred CCCCcchhhHHHHhccCCCchHHHHHHhcCCceE-EecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 148 DDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV-LFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 148 D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
|.... +..... ++..+.......- ....+..+++..+.++.+|++.|.+...
T Consensus 178 D~~gA-----~~~~~~-----l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 178 DRPGA-----DRTVRD-----LRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp SHHHH-----HHHHHH-----HHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ChHHH-----HHHHHH-----HHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 94322 333333 4445544332111 1112346677788999999998877543
No 347
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.59 E-value=1.4e-07 Score=77.92 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++.+++|+|+||+|||||+++|+|... +..|.++.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~----~~~G~i~~ 70 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLH----VESGQIQI 70 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC----CCCeeEEE
Confidence 457999999999999999999999865 44454443
No 348
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.59 E-value=3.1e-07 Score=70.57 Aligned_cols=36 Identities=31% Similarity=0.384 Sum_probs=29.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
..+.+|+|+|++|+|||||+|.|+|... +..|.+.+
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~----P~~G~i~i 58 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFET----PASGEILI 58 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhccC----CCCceEEE
Confidence 4557999999999999999999999876 55554444
No 349
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.59 E-value=3.5e-06 Score=81.07 Aligned_cols=44 Identities=16% Similarity=-0.011 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcchhhHHHHhcc
Q 017924 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~~~l~~~~~~ 163 (363)
..+|++++.++.+...++... .++|+ +|++|.... .++.+++..
T Consensus 155 ~~LSgGekqRv~LAraL~~~P---~lLLLDEPt~~LD~~~~--~~L~~~L~~ 201 (635)
T PRK11147 155 SSLSGGWLRKAALGRALVSNP---DVLLLDEPTNHLDIETI--EWLEGFLKT 201 (635)
T ss_pred hhcCHHHHHHHHHHHHHhcCC---CEEEEcCCCCccCHHHH--HHHHHHHHh
Confidence 478999999999998887653 45555 799998765 677766655
No 350
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.58 E-value=5.8e-06 Score=71.86 Aligned_cols=126 Identities=18% Similarity=0.211 Sum_probs=66.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccc------cccCC-CC----------CceeeEeEEEE---------------
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK------ASAGS-SG----------VTKTCEMKTTV--------------- 64 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~------~~~~~-~~----------~t~~~~~~~~~--------------- 64 (363)
..+..|+|+|+||+||||++..|++...-. ..... +. ......+....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 456799999999999999999987543200 00000 00 00001111000
Q ss_pred -eeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc----cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccc
Q 017924 65 -LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM----AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139 (363)
Q Consensus 65 -~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 139 (363)
...+..+.+|||+|.... +.....++...... ....++..++|++++. ..............++ .
T Consensus 192 ~~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~--g~~~~~~a~~f~~~~~-----~ 261 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT--GQNALSQAKAFHEAVG-----L 261 (318)
T ss_pred HHhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC--ChHHHHHHHHHHhhCC-----C
Confidence 013446789999997653 33333444443321 1234677889998862 2222222222222222 4
Q ss_pred eEEEEeCCCCCCc
Q 017924 140 MIVVFTGGDDLED 152 (363)
Q Consensus 140 ~i~v~n~~D~~~~ 152 (363)
.-+|+||+|....
T Consensus 262 ~giIlTKlD~t~~ 274 (318)
T PRK10416 262 TGIILTKLDGTAK 274 (318)
T ss_pred CEEEEECCCCCCC
Confidence 5688899996644
No 351
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.58 E-value=2.5e-07 Score=82.66 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..+.+|+|||+||+||||++..|++.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999988875
No 352
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=5.5e-07 Score=83.03 Aligned_cols=166 Identities=18% Similarity=0.213 Sum_probs=103.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-----------------CCcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~l~DtpG~~~~ 82 (363)
..++|+|+..+|||-|+..|.|.+...+ ..|++|....-.++... .-..+.+|||||...
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqeg--eaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs- 552 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEG--EAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES- 552 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccc--cccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh-
Confidence 5899999999999999999998776332 23344433222222110 112467999999443
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc-----c----
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-----H---- 153 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~-----~---- 153 (363)
|.+.-.++..-+|..|+|+|+-|.+.......+.+|+.. .. |+||.+||+|.+-. .
T Consensus 553 ----------FtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~r---kt--pFivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 553 ----------FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMR---KT--PFIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred ----------hhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhc---CC--CeEEeehhhhhhcccccCCCchHH
Confidence 444444455567999999999888888777777777654 22 89999999997632 0
Q ss_pred -------hhhHHHHhccCCCchHHHHHHhcC----CceEEecC--------CCcccccchhHHHHHHHHHHHHH
Q 017924 154 -------EKTLEDFLGHECPKPLKEILQLCD----NRCVLFDN--------KTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 154 -------~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.....+|-.+ +..++..+. +..+.|.+ ..++|+..+.++-.|+.+|-.+.
T Consensus 618 ~~lkkQ~k~v~~EF~~R-----~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKER-----LNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred HHHHHhhHHHHHHHHHH-----HHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 1122223333 444433321 11111211 23577888999999988876653
No 353
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.57 E-value=3.8e-07 Score=76.70 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=28.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~----p~~G~i~~ 58 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK----PDEGDIEI 58 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc----CCCCeEEE
Confidence 567999999999999999999999876 55555443
No 354
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.57 E-value=1.5e-07 Score=77.85 Aligned_cols=27 Identities=37% Similarity=0.493 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999999765
No 355
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=7.9e-07 Score=73.34 Aligned_cols=141 Identities=17% Similarity=0.247 Sum_probs=84.3
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhcccc---------ccc-----ccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCC
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGRKA---------FKA-----SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~~~---------~~~-----~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 80 (363)
.+.+..+|+.||+...|||||..+|++... |.. ..-..++|+...-..+.. .++.+..+|.||.-
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHa 86 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHA 86 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChH
Confidence 346678999999999999999999874321 100 011244555443333333 67788899999965
Q ss_pred CCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHH
Q 017924 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF 160 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~ 160 (363)
|. +...|..+ ..-|..|+|+.+++.--...+..+-+ ....|-. .+++++||+|..++ ..+.+.
T Consensus 87 DY------vKNMItgA-----aqmDgAILVVsA~dGpmPqTrEHiLl-arqvGvp---~ivvflnK~Dmvdd--~ellel 149 (394)
T COG0050 87 DY------VKNMITGA-----AQMDGAILVVAATDGPMPQTREHILL-ARQVGVP---YIVVFLNKVDMVDD--EELLEL 149 (394)
T ss_pred HH------HHHHhhhH-----HhcCccEEEEEcCCCCCCcchhhhhh-hhhcCCc---EEEEEEecccccCc--HHHHHH
Confidence 41 22233322 24577888887764444444444332 2334432 57778999999975 444444
Q ss_pred hccCCCchHHHHHHhcC
Q 017924 161 LGHECPKPLKEILQLCD 177 (363)
Q Consensus 161 ~~~~~~~~~~~~~~~~~ 177 (363)
+.. ..++++...+
T Consensus 150 Vem----EvreLLs~y~ 162 (394)
T COG0050 150 VEM----EVRELLSEYG 162 (394)
T ss_pred HHH----HHHHHHHHcC
Confidence 332 2666666643
No 356
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=4.5e-07 Score=76.89 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999865
No 357
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.56 E-value=1.7e-07 Score=74.35 Aligned_cols=58 Identities=28% Similarity=0.413 Sum_probs=38.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 80 (363)
...+++++|.+|+|||||+|.|++.......... ..|..... +.. + ..+.++||||+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~-~~T~~~~~--~~~-~-~~~~~iDtpG~~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKP-GVTKGIQW--IKI-S-PGIYLLDTPGIL 171 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCC-CEEeeeEE--EEe-c-CCEEEEECCCCC
Confidence 3468999999999999999999986642222222 22333332 222 2 567899999974
No 358
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=2.9e-07 Score=80.07 Aligned_cols=117 Identities=17% Similarity=0.235 Sum_probs=73.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhh--cccccccc------------------cCCCCCceeeEeEEEEeeCCcEEEEEeCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL--GRKAFKAS------------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~--g~~~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG 78 (363)
..+.+||-++.||||||-..|+ |......+ ....++++...+-.+.+ ++..++++||||
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDTPG 90 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDTPG 90 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCCCC
Confidence 3689999999999999997654 22111000 11133444444444555 788999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..|... +..+-+ .-+|+.+.|+|+...+....+..++ +.++.+- |++-++||+|....
T Consensus 91 HeDFSE---DTYRtL--------tAvDsAvMVIDaAKGiE~qT~KLfe-VcrlR~i----PI~TFiNKlDR~~r 148 (528)
T COG4108 91 HEDFSE---DTYRTL--------TAVDSAVMVIDAAKGIEPQTLKLFE-VCRLRDI----PIFTFINKLDREGR 148 (528)
T ss_pred ccccch---hHHHHH--------HhhheeeEEEecccCccHHHHHHHH-HHhhcCC----ceEEEeeccccccC
Confidence 888532 212222 2358899999987455444443333 2233332 89999999998866
No 359
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=1e-06 Score=69.25 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=67.6
Q ss_pred cEEEEEcCCCCchHHHHHHhh-cccccccccCCCCCce-eeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSIL-GRKAFKASAGSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~-g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..|.++|..++|||+|+=.|. |.. .+++|. ......+.. +...+++||.||... +...+...+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~-------~~TvtSiepn~a~~r~-gs~~~~LVD~PGH~r-------lR~kl~e~~ 103 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSH-------RGTVTSIEPNEATYRL-GSENVTLVDLPGHSR-------LRRKLLEYL 103 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCc-------cCeeeeeccceeeEee-cCcceEEEeCCCcHH-------HHHHHHHHc
Confidence 589999999999999995554 322 122222 222222333 455678999999543 233344433
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHH----HHHhccccccceEEEEeCCCCCCc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRL----PNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
... ..+-+++||+|.. -+..+-+..-+.+ ....+.....+++|+-||-|+...
T Consensus 104 ~~~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 104 KHN-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred ccc-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 322 3678999999876 4444433333332 222112222378888899998765
No 360
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.56 E-value=6.7e-07 Score=70.29 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999875
No 361
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.56 E-value=6.5e-07 Score=74.36 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999999865
No 362
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.56 E-value=4.4e-07 Score=75.24 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 457999999999999999999999865
No 363
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.55 E-value=7.8e-07 Score=72.90 Aligned_cols=128 Identities=17% Similarity=0.174 Sum_probs=72.0
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC---ChHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA---GSEFVGKE 92 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~ 92 (363)
......++++|.+++|||||||.++......-........+.+ +. .+.-+..++++|.||++.... ...+....
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~-in--~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQA-IN--HFHVGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCcccee-ee--eeeccceEEEEecCCcccccCCccCcchHhHh
Confidence 3445799999999999999999998554311111111111111 11 111366788999999554322 12222333
Q ss_pred HHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
...++... ...-.++++++++-.+..-+...++++.+. .+ |+.+|+||+|....
T Consensus 210 t~~Y~leR-~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~---~V--P~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 210 TKSYLLER-ENLVRVFLLVDASVPIQPTDNPEIAWLGEN---NV--PMTSVFTKCDKQKK 263 (320)
T ss_pred HHHHHHhh-hhhheeeeeeeccCCCCCCChHHHHHHhhc---CC--CeEEeeehhhhhhh
Confidence 33333222 233344455565545555566666666553 22 89999999998754
No 364
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.55 E-value=4.7e-07 Score=73.42 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
++..++|+|+||+|||||+++|+|..
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999999986
No 365
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.54 E-value=3.6e-07 Score=75.86 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999765
No 366
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.54 E-value=7.4e-07 Score=70.27 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=27.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t 55 (363)
++.+++|+|+||+|||||+++|+|... +..|.+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~ 59 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP----WGSGRIG 59 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCceEE
Confidence 457999999999999999999999865 4445443
No 367
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.54 E-value=3.4e-07 Score=77.17 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=24.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++..++|+|+||+|||||+++|+|...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3557999999999999999999999765
No 368
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.53 E-value=2.1e-07 Score=76.33 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457999999999999999999999865
No 369
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=5.1e-07 Score=74.44 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|+|+||+|||||+++|+|...
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999998865
No 370
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=1.6e-07 Score=77.34 Aligned_cols=28 Identities=36% Similarity=0.404 Sum_probs=24.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++..++|+|+||+|||||+++|+|...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3557899999999999999999999865
No 371
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.53 E-value=5.2e-07 Score=79.26 Aligned_cols=163 Identities=19% Similarity=0.207 Sum_probs=97.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhccccc-----------c--cccCCCCCceeeEeEEEEee----CCcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAF-----------K--ASAGSSGVTKTCEMKTTVLK----DGQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~-----------~--~~~~~~~~t~~~~~~~~~~~----~~~~~~l~DtpG~~~~ 82 (363)
.+..||.+-..|||||.+.|+....- . -..-.+++|+..+-....+. ..+.++++||||.-|+
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 57889999999999999988632210 0 00123566776655444332 2367899999998875
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~ 162 (363)
. ++ ..+.+. -+.+.++|+|++..........+-+..+ .+ .-++-|+||+|+-..+ .+....
T Consensus 90 s---YE----VSRSLA----ACEGalLvVDAsQGveAQTlAN~YlAle---~~--LeIiPViNKIDLP~Ad---pervk~ 150 (603)
T COG0481 90 S---YE----VSRSLA----ACEGALLVVDASQGVEAQTLANVYLALE---NN--LEIIPVLNKIDLPAAD---PERVKQ 150 (603)
T ss_pred E---EE----ehhhHh----hCCCcEEEEECccchHHHHHHHHHHHHH---cC--cEEEEeeecccCCCCC---HHHHHH
Confidence 2 22 222222 3467788889875554444333322222 12 2577889999987652 222222
Q ss_pred cCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHcC
Q 017924 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (363)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 212 (363)
. +.+++..-.. .....|++++.++.++++.|-..+....
T Consensus 151 e-----Ie~~iGid~~------dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 151 E-----IEDIIGIDAS------DAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred H-----HHHHhCCCcc------hheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 2 3334332111 2235688999999999999888775443
No 372
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.53 E-value=4.7e-07 Score=78.11 Aligned_cols=109 Identities=18% Similarity=0.103 Sum_probs=58.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-----------EEEe--eCCcEEEEEeCCCCCCC--
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-----------TTVL--KDGQVVNVIDTPGLFDL-- 82 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-----------~~~~--~~~~~~~l~DtpG~~~~-- 82 (363)
++..++|+|++|||||||+++|+|-.. ++.|.+.+..... .+.+ .-..++++.|..+|.-.
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe~----~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~ 103 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLEE----PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR 103 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC
Confidence 456899999999999999999999887 5555544432221 1111 00123334444443321
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK 134 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~ 134 (363)
.....++.+.+....... +++.++--. . ..+++++++++.+.+.+...
T Consensus 104 ~~~k~ei~~rV~eva~~L--~l~~lL~r~-P-~~LSGGQrQRVAlaRAlVr~ 151 (338)
T COG3839 104 GVPKAEIDKRVKEVAKLL--GLEHLLNRK-P-LQLSGGQRQRVALARALVRK 151 (338)
T ss_pred CCchHHHHHHHHHHHHHc--CChhHHhcC-c-ccCChhhHHHHHHHHHHhcC
Confidence 112333333333332211 111111111 1 36888888888888877665
No 373
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=7e-07 Score=74.82 Aligned_cols=36 Identities=28% Similarity=0.319 Sum_probs=28.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
.++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 64 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLER----PTSGSVLV 64 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEE
Confidence 3567999999999999999999999875 44454443
No 374
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.52 E-value=2.8e-07 Score=80.34 Aligned_cols=61 Identities=25% Similarity=0.243 Sum_probs=41.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (363)
..+++|||-+++|||||||+|+|..... .+..+.++..... +. -+..+.++||||+.-...
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~--~s~~PG~Tk~~q~-i~--~~~~i~LlDtPGii~~~~ 192 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAK--TSNRPGTTKGIQW-IK--LDDGIYLLDTPGIIPPKF 192 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhccccee--eCCCCceecceEE-EE--cCCCeEEecCCCcCCCCc
Confidence 3689999999999999999999998732 3333333322221 11 234477999999876543
No 375
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.52 E-value=1e-06 Score=71.52 Aligned_cols=36 Identities=28% Similarity=0.317 Sum_probs=29.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
+.+..|+|+|++|||||||+|.|.|-+. ++.|.+..
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~----pt~G~v~i 64 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDK----PTSGEVLI 64 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC----CCCceEEE
Confidence 3557999999999999999999998877 55554444
No 376
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.52 E-value=4.7e-07 Score=76.39 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 457999999999999999999998765
No 377
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.51 E-value=7.2e-07 Score=74.48 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999875
No 378
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.51 E-value=3.4e-07 Score=75.69 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999865
No 379
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.51 E-value=5.7e-07 Score=74.25 Aligned_cols=27 Identities=41% Similarity=0.514 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999999865
No 380
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=8.5e-07 Score=75.89 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 557999999999999999999999875
No 381
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.51 E-value=2.3e-07 Score=88.62 Aligned_cols=121 Identities=18% Similarity=0.155 Sum_probs=70.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-------------EEEEeeCCc--EEEEEeCCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-------------KTTVLKDGQ--VVNVIDTPGLFDL 82 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-------------~~~~~~~~~--~~~l~DtpG~~~~ 82 (363)
++.+|+|||++|||||||++.|+|-.. +..|.+..+..- ..+.+ +.. .-++.|..-+++.
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~----p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q-~~~Lf~gSI~eNi~l~~p 572 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYK----PQQGRILLDGVDLNDIDLASLRRQVGYVLQ-DPFLFSGSIRENIALGNP 572 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCEeHHhcCHHHHHhheeEEcc-cchhhcCcHHHHHhcCCC
Confidence 456999999999999999999998876 666655543221 11111 100 1112233333444
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEE---------EeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCC
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLV---------VFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDL 150 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---------v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~ 150 (363)
..+.+++.+.... + ++|.++. +.+.+..++++.+.++...+.+..+. +++++ ++++|..
T Consensus 573 ~~~~e~i~~A~~~----a--g~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P---~ILlLDEaTSaLD~~ 643 (709)
T COG2274 573 EATDEEIIEAAQL----A--GAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP---KILLLDEATSALDPE 643 (709)
T ss_pred CCCHHHHHHHHHH----h--CcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC---CEEEEeCcccccCHh
Confidence 4444443333222 1 2222221 22334589999999999999988764 45554 6777765
Q ss_pred Cc
Q 017924 151 ED 152 (363)
Q Consensus 151 ~~ 152 (363)
+.
T Consensus 644 sE 645 (709)
T COG2274 644 TE 645 (709)
T ss_pred HH
Confidence 44
No 382
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.50 E-value=7.2e-06 Score=68.39 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhh
Q 017924 17 NGERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~ 40 (363)
.+..+|+|.|.+|+|||||+..|.
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHH
Confidence 445799999999999999999885
No 383
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.50 E-value=6.3e-07 Score=79.99 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~ 54 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMIAGLED 54 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456999999999999999999999875
No 384
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.49 E-value=2.9e-07 Score=75.99 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999999865
No 385
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=5.7e-08 Score=86.11 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHHhccccccceEEE----EeCCCCCCcchhhHHHHhcc
Q 017924 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~i~v----~n~~D~~~~~~~~l~~~~~~ 163 (363)
..|+++=+-.+.+.+.+|.. |-+++ +||+|...- .||+.|+..
T Consensus 197 ~slSGGWrMrlaLARAlf~~----pDlLLLDEPTNhLDv~av--~WLe~yL~t 243 (582)
T KOG0062|consen 197 KSLSGGWRMRLALARALFAK----PDLLLLDEPTNHLDVVAV--AWLENYLQT 243 (582)
T ss_pred cccCcchhhHHHHHHHHhcC----CCEEeecCCcccchhHHH--HHHHHHHhh
Confidence 37888888888888888876 45554 799998866 788877776
No 386
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.49 E-value=9.5e-07 Score=70.26 Aligned_cols=124 Identities=20% Similarity=0.254 Sum_probs=71.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc-ccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
...+|+++|.+|+||||+=-++.-.. .+. ...-+.|++..-....+.++-.+.++|..|.. ..+...+...
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D--~~rlg~tidveHsh~RflGnl~LnlwDcGgqe------~fmen~~~~q 74 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARD--TRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE------EFMENYLSSQ 74 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhh--hhccCCcceeeehhhhhhhhheeehhccCCcH------HHHHHHHhhc
Confidence 45799999999999999877665221 111 12223344444444444344567788888732 1222222222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH----HHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE----TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
-...+..++++++|+|+..+--..+. ..|+.+...... + .+++++.|.|+...
T Consensus 75 ~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~-A--kiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 75 EDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPE-A--KIFCLLHKMDLVQE 131 (295)
T ss_pred chhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCc-c--eEEEEEeechhccc
Confidence 23445678999999999733222222 233444433222 2 67788899999876
No 387
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=7.3e-07 Score=78.82 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=28.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... +..|.+..
T Consensus 31 ~Ge~~~llGpsGsGKSTLLr~IaGl~~----p~~G~I~~ 65 (351)
T PRK11432 31 QGTMVTLLGPSGCGKTTVLRLVAGLEK----PTEGQIFI 65 (351)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCC----CCceEEEE
Confidence 456999999999999999999999876 45554443
No 388
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.49 E-value=8.5e-07 Score=78.49 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=65.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEE-Eee------CCcEEEEEeCCCCCCCCCChHHH-
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLK------DGQVVNVIDTPGLFDLSAGSEFV- 89 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~------~~~~~~l~DtpG~~~~~~~~~~~- 89 (363)
.+..++|+|+||||||||+++|+|... ++.|.+......... ... .....++.+.++++....-.+.+
T Consensus 18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~----p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~ 93 (363)
T TIGR01186 18 KGEIFVIMGLSGSGKSTTVRMLNRLIE----PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTS 93 (363)
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC----CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHH
Confidence 457999999999999999999999876 555544443321100 000 11223355556555321111111
Q ss_pred -------------HHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCC
Q 017924 90 -------------GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLE 151 (363)
Q Consensus 90 -------------~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~ 151 (363)
.+.+...+... +.+. +....-..+++++++++.....+.... +++++ ++.+|...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~v--gL~~--~~~~~p~~LSGGq~QRV~lARAL~~~p---~iLLlDEP~saLD~~~ 164 (363)
T TIGR01186 94 LGPELLGWPEQERKEKALELLKLV--GLEE--YEHRYPDELSGGMQQRVGLARALAAEP---DILLMDEAFSALDPLI 164 (363)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhc--CCch--hhhCChhhCCHHHHHHHHHHHHHhcCC---CEEEEeCCcccCCHHH
Confidence 11111111111 1111 112222478999999999888887653 45554 55666543
No 389
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=1.1e-06 Score=73.53 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456999999999999999999999765
No 390
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.48 E-value=3.3e-07 Score=75.98 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=28.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~ 64 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLE----PDAGFATV 64 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC----CCCceEEE
Confidence 457999999999999999999999865 44454443
No 391
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.48 E-value=5.9e-07 Score=74.03 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 60 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLG----PTSGEVLV 60 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEE
Confidence 457999999999999999999999865 44454443
No 392
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=8.6e-07 Score=74.57 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999865
No 393
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.48 E-value=4e-07 Score=75.23 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457999999999999999999999865
No 394
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.48 E-value=1.2e-06 Score=72.36 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567999999999999999999999865
No 395
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.47 E-value=5.2e-07 Score=78.54 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... +..|.+..
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~----p~~G~i~~ 52 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLLR----PTSGTARV 52 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEE
Confidence 457999999999999999999999865 44554443
No 396
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.47 E-value=5.5e-07 Score=78.44 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999765
No 397
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.47 E-value=9.9e-07 Score=78.33 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~ 49 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLTR 49 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999999865
No 398
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=2.4e-07 Score=76.34 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=22.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcccc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++|+|+||+|||||+++|+|...
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 999999999999999999999765
No 399
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=7.5e-07 Score=75.09 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 61 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEM----PRSGTLNI 61 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEE
Confidence 557999999999999999999999865 44454443
No 400
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.46 E-value=1.4e-06 Score=73.22 Aligned_cols=27 Identities=30% Similarity=0.262 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 457999999999999999999999765
No 401
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.46 E-value=5.1e-07 Score=73.72 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999999865
No 402
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=9.8e-07 Score=74.38 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999999865
No 403
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.46 E-value=5.9e-07 Score=70.21 Aligned_cols=57 Identities=28% Similarity=0.349 Sum_probs=38.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (363)
...+++++|.+|+|||||+|.|.+..........+ .|...+ .+. .+..+.++||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~-~t~~~~--~~~--~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPG-YTKGEQ--LVK--ITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCC-eeeeeE--EEE--cCCCEEEEECcCC
Confidence 34689999999999999999999766433333333 232222 111 2346789999995
No 404
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.46 E-value=1.2e-06 Score=78.00 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~ 48 (354)
T TIGR02142 22 GQGVTAIFGRSGSGKTTLIRLIAGLTR 48 (354)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999999865
No 405
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.46 E-value=5.1e-07 Score=79.50 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=28.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... ++.|.+.+
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~~----p~~G~i~i 100 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMILGMTS----PDAGKITV 100 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC----CCceEEEE
Confidence 467999999999999999999999876 55554443
No 406
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.46 E-value=4.2e-06 Score=79.34 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|+|+||||||||+++|+|...
T Consensus 32 ~Ge~~~iiG~NGsGKSTLlk~i~G~~~ 58 (556)
T PRK11819 32 PGAKIGVLGLNGAGKSTLLRIMAGVDK 58 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999999865
No 407
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.46 E-value=6.4e-07 Score=73.54 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456999999999999999999999865
No 408
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.46 E-value=5.3e-07 Score=78.45 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... ++.|.+.+
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~----p~~G~v~i 66 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTH----PDAGSISL 66 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEE
Confidence 456899999999999999999999876 55554443
No 409
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=2.9e-06 Score=80.06 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|+|+||||||||+++|+|...
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 52 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDLE 52 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999765
No 410
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=1.1e-06 Score=77.84 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 457999999999999999999999875
No 411
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=6.2e-07 Score=79.48 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=27.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... +..|.+..
T Consensus 29 ~Ge~~~llG~sGsGKSTLLr~iaGl~~----p~~G~I~~ 63 (356)
T PRK11650 29 DGEFIVLVGPSGCGKSTLLRMVAGLER----ITSGEIWI 63 (356)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCC----CCceEEEE
Confidence 456899999999999999999999876 44444433
No 412
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.45 E-value=1.8e-07 Score=75.56 Aligned_cols=42 Identities=26% Similarity=0.257 Sum_probs=35.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT 62 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~ 62 (363)
..+.+|+|||.||||||||++.|+|... ++.|.+.+...+..
T Consensus 51 ~~Ge~vGiiG~NGaGKSTLlkliaGi~~----Pt~G~v~v~G~v~~ 92 (249)
T COG1134 51 YKGERVGIIGHNGAGKSTLLKLIAGIYK----PTSGKVKVTGKVAP 92 (249)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCccC----CCCceEEEcceEeh
Confidence 4567999999999999999999999987 88888777666653
No 413
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.45 E-value=3.6e-06 Score=74.12 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..|+|+|++|+||||++..|++..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999987653
No 414
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.45 E-value=7.4e-07 Score=73.01 Aligned_cols=35 Identities=31% Similarity=0.319 Sum_probs=29.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT 57 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~ 57 (363)
+-+++++|+|||||||+++.|+|... ++.|.+.+.
T Consensus 50 G~ivgflGaNGAGKSTtLKmLTGll~----p~~G~v~V~ 84 (325)
T COG4586 50 GEIVGFLGANGAGKSTTLKMLTGLLL----PTSGKVRVN 84 (325)
T ss_pred CcEEEEEcCCCCcchhhHHHHhCccc----cCCCeEEec
Confidence 46999999999999999999999987 666655543
No 415
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.45 E-value=6.4e-07 Score=85.49 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=70.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE----------EEeeCCcEEEEEeC----CCCCCC-
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT----------TVLKDGQVVNVIDT----PGLFDL- 82 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~----------~~~~~~~~~~l~Dt----pG~~~~- 82 (363)
++.+|+|+|++|+|||||+++|+|... +..|.+........ +.+..+....+-+| ..++..
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~----~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 432 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYE----PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE 432 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCC
Confidence 567999999999999999999999876 55555544331100 00001111112222 122221
Q ss_pred CCChHHHHHHHHHH-----HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 83 SAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 83 ~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
...++++.+.+... +.....+.|.. +.+.+..+++++++++...+.++... +++++ ++.+|....
T Consensus 433 ~~~~~~i~~~l~~~~l~~~i~~lp~gldt~--i~~~g~~LSgGqrQRiaLARall~~~---~illLDEpts~LD~~~~ 505 (571)
T TIGR02203 433 QADRAEIERALAAAYAQDFVDKLPLGLDTP--IGENGVLLSGGQRQRLAIARALLKDA---PILILDEATSALDNESE 505 (571)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCcCcccce--ecCCCCcCCHHHHHHHHHHHHHhcCC---CEEEEeCccccCCHHHH
Confidence 22334433332221 11111233333 22334589999999999999988754 56665 677776544
No 416
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.45 E-value=7e-07 Score=85.37 Aligned_cols=124 Identities=16% Similarity=0.107 Sum_probs=67.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-------------eEEEEeeCCc--EEEEEeCCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-------------MKTTVLKDGQ--VVNVIDTPGLFDL 82 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-------------~~~~~~~~~~--~~~l~DtpG~~~~ 82 (363)
++.+|+|+|++|+|||||++.|+|... +..|.+..... +.++.+ +.. .-++-|...+...
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~----p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q-~~~lf~~Ti~~Ni~~~~~ 434 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFD----PQSGRILIDGTDIRTVTRASLRRNIAVVFQ-DAGLFNRSIEDNIRVGRP 434 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC----CCCCEEEECCEEhhhCCHHHHHhheEEEec-CcccccccHHHHHhcCCC
Confidence 557999999999999999999999876 55554443321 111111 100 0011111122222
Q ss_pred CCChHHHHHHHHH-----HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCC
Q 017924 83 SAGSEFVGKEIVK-----CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLE 151 (363)
Q Consensus 83 ~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~ 151 (363)
..++.++...+.. ++.....+.|..+ .+....+++++++++...+.++... +++++ ++.+|...
T Consensus 435 ~~~d~~i~~al~~~~l~~~i~~lp~gldt~i--~~~g~~LSgGq~QRialARall~~~---~iliLDEpts~LD~~t 506 (588)
T PRK13657 435 DATDEEMRAAAERAQAHDFIERKPDGYDTVV--GERGRQLSGGERQRLAIARALLKDP---PILILDEATSALDVET 506 (588)
T ss_pred CCCHHHHHHHHHHhCHHHHHHhCcccccchh--cCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCccCCCHHH
Confidence 2233443333222 1221222334332 2333479999999999999887754 56555 55666443
No 417
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.45 E-value=6.4e-07 Score=78.35 Aligned_cols=122 Identities=20% Similarity=0.165 Sum_probs=65.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccc--------ccccCC-CCC--------ceeeEeEEEE-----------ee--CC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAF--------KASAGS-SGV--------TKTCEMKTTV-----------LK--DG 68 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~--------~~~~~~-~~~--------t~~~~~~~~~-----------~~--~~ 68 (363)
..+|+|+|++|+||||++..|++.... ..+... +.. .....+.... .. .+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 469999999999999999998743210 000000 000 0000000000 00 12
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCC
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D 148 (363)
..+.||||+|... .+.....++.+.+... ..+.+++|++++ .-.......++.+.. ++ .--+|+||+|
T Consensus 321 ~DvVLIDTaGRs~---kd~~lm~EL~~~lk~~--~PdevlLVLsAT-tk~~d~~~i~~~F~~-~~-----idglI~TKLD 388 (436)
T PRK11889 321 VDYILIDTAGKNY---RASETVEEMIETMGQV--EPDYICLTLSAS-MKSKDMIEIITNFKD-IH-----IDGIVFTKFD 388 (436)
T ss_pred CCEEEEeCccccC---cCHHHHHHHHHHHhhc--CCCeEEEEECCc-cChHHHHHHHHHhcC-CC-----CCEEEEEccc
Confidence 4678999999755 2334455565555433 356778888765 222222333333332 11 3457789999
Q ss_pred CCCc
Q 017924 149 DLED 152 (363)
Q Consensus 149 ~~~~ 152 (363)
....
T Consensus 389 ET~k 392 (436)
T PRK11889 389 ETAS 392 (436)
T ss_pred CCCC
Confidence 8765
No 418
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.45 E-value=5.8e-07 Score=79.86 Aligned_cols=61 Identities=23% Similarity=0.253 Sum_probs=39.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccc---cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFK---ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (363)
+.+|+|||.+|+|||||||+|++..... ...+..+.|+.... .+.. +..+.++||||+...
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~-~~~~--~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI-EIPL--DDGHSLYDTPGIINS 217 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE-EEEe--CCCCEEEECCCCCCh
Confidence 3689999999999999999999754210 12333344443322 2222 234569999999864
No 419
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.44 E-value=1.2e-06 Score=71.01 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
++..++|+|+||+|||||+++|+|..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999999864
No 420
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=1.1e-06 Score=80.08 Aligned_cols=115 Identities=23% Similarity=0.289 Sum_probs=71.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhccccccc--c-------------cCCCCCceeeEeEEEEeeC----CcEEEEEeCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKA--S-------------AGSSGVTKTCEMKTTVLKD----GQVVNVIDTPGLF 80 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~--~-------------~~~~~~t~~~~~~~~~~~~----~~~~~l~DtpG~~ 80 (363)
.+|+|+|+-++|||+|++.|.++..-.. . ...+++++...-..+...+ .+-++++||||.-
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHV 208 (971)
T KOG0468|consen 129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHV 208 (971)
T ss_pred EEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcc
Confidence 5899999999999999999987653100 0 0112223222222222211 3457899999987
Q ss_pred CCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCC
Q 017924 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~ 150 (363)
+. ..+..+.+ .-.|++++++|+.....-...+.++..... . .++++|+||+|.+
T Consensus 209 nF-------~DE~ta~l----~~sDgvVlvvDv~EGVmlntEr~ikhaiq~---~--~~i~vviNKiDRL 262 (971)
T KOG0468|consen 209 NF-------SDETTASL----RLSDGVVLVVDVAEGVMLNTERIIKHAIQN---R--LPIVVVINKVDRL 262 (971)
T ss_pred cc-------hHHHHHHh----hhcceEEEEEEcccCceeeHHHHHHHHHhc---c--CcEEEEEehhHHH
Confidence 64 22333333 245899999998766666665555544332 2 2899999999965
No 421
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.43 E-value=9.5e-07 Score=73.98 Aligned_cols=27 Identities=37% Similarity=0.410 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999999865
No 422
>PRK10908 cell division protein FtsE; Provisional
Probab=98.43 E-value=7.5e-07 Score=74.02 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=25.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++..++|+|+||+|||||+++|+|...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567999999999999999999999865
No 423
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.43 E-value=3.1e-06 Score=67.88 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 59 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRP----PASGEITL 59 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEE
Confidence 456999999999999999999999876 44454443
No 424
>PRK13409 putative ATPase RIL; Provisional
Probab=98.43 E-value=4.5e-07 Score=85.74 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=28.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
..+.+++|+|+||+|||||+++|+|... +..|.+..
T Consensus 363 ~~Geiv~l~G~NGsGKSTLlk~L~Gl~~----p~~G~I~~ 398 (590)
T PRK13409 363 YEGEVIGIVGPNGIGKTTFAKLLAGVLK----PDEGEVDP 398 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEE
Confidence 3556999999999999999999999876 55554443
No 425
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.43 E-value=1.7e-07 Score=79.13 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
....|.|+|.+|||||||++.|++.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888765
No 426
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.43 E-value=7.5e-07 Score=76.38 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999999865
No 427
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.43 E-value=1.2e-06 Score=77.60 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=28.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... +..|.+..
T Consensus 29 ~Ge~~~l~GpsGsGKSTLLr~iaGl~~----p~~G~I~i 63 (353)
T TIGR03265 29 KGEFVCLLGPSGCGKTTLLRIIAGLER----QTAGTIYQ 63 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC----CCceEEEE
Confidence 457999999999999999999999876 55554444
No 428
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=1.6e-06 Score=74.07 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 567999999999999999999999765
No 429
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.43 E-value=1.5e-06 Score=71.86 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..++|+|+||+|||||+++|+|...
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 6899999999999999999999865
No 430
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.42 E-value=3.5e-06 Score=80.32 Aligned_cols=124 Identities=19% Similarity=0.173 Sum_probs=64.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccccc-CCCCCceeeE-------------eEE--EE-------------eeCCc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTKTCE-------------MKT--TV-------------LKDGQ 69 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~-~~~~~t~~~~-------------~~~--~~-------------~~~~~ 69 (363)
+.+|+|||+||+||||++..|++......+. ...-++.+.. ... +. ...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 4699999999999999999998654211100 0000000000 000 00 00234
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCC
Q 017924 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGD 148 (363)
Q Consensus 70 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D 148 (363)
.++||||+|.... +..+.+++..... ....+-+++|++++ . ...+. ..+..+....+.+ ..-+|+||+|
T Consensus 265 D~VLIDTAGRs~~---d~~l~eel~~l~~--~~~p~e~~LVLsAt-~-~~~~l~~i~~~f~~~~~~~---i~glIlTKLD 334 (767)
T PRK14723 265 HLVLIDTVGMSQR---DRNVSEQIAMLCG--VGRPVRRLLLLNAA-S-HGDTLNEVVHAYRHGAGED---VDGCIITKLD 334 (767)
T ss_pred CEEEEeCCCCCcc---CHHHHHHHHHHhc--cCCCCeEEEEECCC-C-cHHHHHHHHHHHhhcccCC---CCEEEEeccC
Confidence 5789999997652 3334444444332 22456678888875 1 12222 2223332211111 3457789999
Q ss_pred CCCc
Q 017924 149 DLED 152 (363)
Q Consensus 149 ~~~~ 152 (363)
....
T Consensus 335 Et~~ 338 (767)
T PRK14723 335 EATH 338 (767)
T ss_pred CCCC
Confidence 8765
No 431
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.42 E-value=2.1e-06 Score=69.23 Aligned_cols=72 Identities=24% Similarity=0.198 Sum_probs=43.1
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCC
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D 148 (363)
..+.+|||+|... .+.....++...+... ..+-+++|++++ ....+...+......++ .--+++||+|
T Consensus 84 ~D~vlIDT~Gr~~---~d~~~~~el~~~~~~~--~~~~~~LVlsa~--~~~~~~~~~~~~~~~~~-----~~~lIlTKlD 151 (196)
T PF00448_consen 84 YDLVLIDTAGRSP---RDEELLEELKKLLEAL--NPDEVHLVLSAT--MGQEDLEQALAFYEAFG-----IDGLILTKLD 151 (196)
T ss_dssp SSEEEEEE-SSSS---THHHHHHHHHHHHHHH--SSSEEEEEEEGG--GGGHHHHHHHHHHHHSS-----TCEEEEESTT
T ss_pred CCEEEEecCCcch---hhHHHHHHHHHHhhhc--CCccceEEEecc--cChHHHHHHHHHhhccc-----CceEEEEeec
Confidence 4578999999775 3444556666655444 567888888875 22233333333333333 2346789999
Q ss_pred CCCc
Q 017924 149 DLED 152 (363)
Q Consensus 149 ~~~~ 152 (363)
....
T Consensus 152 et~~ 155 (196)
T PF00448_consen 152 ETAR 155 (196)
T ss_dssp SSST
T ss_pred CCCC
Confidence 8765
No 432
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=1.7e-06 Score=77.52 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... +..|.+..
T Consensus 53 ~Gei~~LvG~NGsGKSTLLr~I~Gl~~----p~sG~I~i 87 (400)
T PRK10070 53 EGEIFVIMGLSGSGKSTMVRLLNRLIE----PTRGQVLI 87 (400)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC----CCCCEEEE
Confidence 457999999999999999999999875 44554433
No 433
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.42 E-value=2.5e-06 Score=67.86 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 456999999999999999999999865
No 434
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.42 E-value=8.6e-07 Score=75.14 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457899999999999999999999765
No 435
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.42 E-value=7.1e-07 Score=80.03 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 28 ~Geiv~liGpNGaGKSTLLk~LaGll~ 54 (402)
T PRK09536 28 EGSLVGLVGPNGAGKTTLLRAINGTLT 54 (402)
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 557899999999999999999999765
No 436
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.42 E-value=1.5e-06 Score=73.79 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999999865
No 437
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.42 E-value=2e-06 Score=73.57 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999999865
No 438
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.41 E-value=5.4e-07 Score=73.78 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~----p~~G~v~~ 60 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLAR----PDAGEVLW 60 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEE
Confidence 456999999999999999999999865 44454443
No 439
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.41 E-value=1.1e-06 Score=71.14 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999999765
No 440
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.41 E-value=1.5e-06 Score=73.92 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=29.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT 57 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~ 57 (363)
++.+++|+|+||+|||||+++|+|... +..|.+...
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~----p~~G~I~~~ 84 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSLS----PTVGKVDRN 84 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC----CCceEEEEC
Confidence 567999999999999999999999876 455554443
No 441
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=1.5e-06 Score=72.71 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999999865
No 442
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.41 E-value=1.7e-05 Score=81.21 Aligned_cols=123 Identities=18% Similarity=0.238 Sum_probs=73.9
Q ss_pred EEEEEcCCCCchHHHHHHhhccccccccc------CC-CCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCC----hHHH
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASA------GS-SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG----SEFV 89 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~------~~-~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~----~~~~ 89 (363)
-.+|||++|+||||||+.. |... .... .. ...|..|... -....+++||.|......+ +...
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~~~~~~t~~c~ww-----f~~~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKF-PLAERLGAAALRGVGGTRNCDWW-----FTDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCC-cCchhhccccccCCCCCcccceE-----ecCCEEEEcCCCccccCCCcccccHHH
Confidence 6789999999999999866 4432 1111 00 1112222222 2234459999996644321 2233
Q ss_pred HHHHHHHHhcc--CCCccEEEEEeecCCCCC--H--------HHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 90 GKEIVKCLGMA--KDGIHAFLVVFSVTNRFS--Q--------EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 90 ~~~~~~~~~~~--~~~~~~~l~v~~~~~~~~--~--------~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
...+...+... ...++++|+++++..-+. . .-+.++..+...+|-.. ||.||+||+|.+..
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~--PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARF--PVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEEecchhhcC
Confidence 44555555444 345799999999873332 2 22334555666666555 99999999999855
No 443
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.40 E-value=2.4e-06 Score=71.49 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999999999876
No 444
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.40 E-value=2.3e-06 Score=71.87 Aligned_cols=27 Identities=30% Similarity=0.261 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 557999999999999999999999865
No 445
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.40 E-value=2e-06 Score=75.75 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... ++.|.+..
T Consensus 30 ~Gei~gIiG~sGaGKSTLlr~I~gl~~----p~~G~I~i 64 (343)
T TIGR02314 30 AGQIYGVIGASGAGKSTLIRCVNLLER----PTSGSVIV 64 (343)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEE
Confidence 456899999999999999999998876 45554443
No 446
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.40 E-value=6.9e-07 Score=74.15 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=27.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t 55 (363)
++..++|+|+||+|||||+++|+|... ++.|.+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~ 60 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELR----PTSGTAY 60 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEE
Confidence 456999999999999999999999865 4445443
No 447
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.40 E-value=7.4e-07 Score=72.41 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=25.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++.+++|+|+||+|||||+++|+|...
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567999999999999999999999865
No 448
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.39 E-value=1.1e-06 Score=73.10 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=33.6
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHH---HhccccccceEEEEeC
Q 017924 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN---LFGKNVFDYMIVVFTG 146 (363)
Q Consensus 70 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~i~v~n~ 146 (363)
.+.++||||..... ..+.....+...+.. ...-++++++|.. .++......-..+.. .+.-+ .|.+.|+||
T Consensus 92 ~y~l~DtPGQiElf-~~~~~~~~i~~~L~~--~~~~~~v~LvD~~-~~~~~~~f~s~~L~s~s~~~~~~--lP~vnvlsK 165 (238)
T PF03029_consen 92 DYLLFDTPGQIELF-THSDSGRKIVERLQK--NGRLVVVFLVDSS-FCSDPSKFVSSLLLSLSIMLRLE--LPHVNVLSK 165 (238)
T ss_dssp SEEEEE--SSHHHH-HHSHHHHHHHHTSSS------EEEEEE-GG-G-SSHHHHHHHHHHHHHHHHHHT--SEEEEEE--
T ss_pred cEEEEeCCCCEEEE-EechhHHHHHHHHhh--hcceEEEEEEecc-cccChhhHHHHHHHHHHHHhhCC--CCEEEeeec
Confidence 46799999954321 111223344444433 3456778888876 444322222111111 11112 299999999
Q ss_pred CCCCCc
Q 017924 147 GDDLED 152 (363)
Q Consensus 147 ~D~~~~ 152 (363)
+|+...
T Consensus 166 ~Dl~~~ 171 (238)
T PF03029_consen 166 IDLLSK 171 (238)
T ss_dssp GGGS-H
T ss_pred cCcccc
Confidence 999873
No 449
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.39 E-value=1.7e-06 Score=73.08 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999999865
No 450
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.39 E-value=1.1e-06 Score=85.69 Aligned_cols=123 Identities=13% Similarity=0.093 Sum_probs=67.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-------------EEEEeeCCcEE---EEEeCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-------------KTTVLKDGQVV---NVIDTPGLFD 81 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-------------~~~~~~~~~~~---~l~DtpG~~~ 81 (363)
++.+|+|+|++|||||||++.|+|... +..|.+..+..- ..+.+ +..+ ++-|...++.
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~----p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q--~~~lf~gTI~eNi~~~~ 551 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLGFET----PESGSVFYDGQDLAGLDVQAVRRQLGVVLQ--NGRLMSGSIFENIAGGA 551 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCCEEEECCEEcCcCCHHHHHhccEEEcc--CCccCcccHHHHHhcCC
Confidence 467999999999999999999999876 556655443321 11111 1000 1111111222
Q ss_pred CCCChHHHHHHHHHH-----HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 82 LSAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
. .+++++.+.+... +.....+.|..+ .+.+..+++++++++...+.++.+. +++++ ++.+|....
T Consensus 552 ~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~i--ge~G~~LSGGQrQRialARAll~~p---~iLiLDEpTS~LD~~te 624 (686)
T TIGR03797 552 P-LTLDEAWEAARMAGLAEDIRAMPMGMHTVI--SEGGGTLSGGQRQRLLIARALVRKP---RILLFDEATSALDNRTQ 624 (686)
T ss_pred C-CCHHHHHHHHHHcCcHHHHHhccccccccc--cCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCccCCCHHHH
Confidence 2 2333333332221 111111223322 2333589999999999999988764 56665 567775544
No 451
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.39 E-value=1.3e-06 Score=71.67 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~ 61 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLLP----PAAGTIKL 61 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEE
Confidence 467999999999999999999999865 44454443
No 452
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.39 E-value=1.3e-06 Score=74.31 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999999865
No 453
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=2.1e-06 Score=74.16 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... +..|.+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~~----p~~G~i~~ 66 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINALLK----PTTGTVTV 66 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEE
Confidence 457999999999999999999999865 44454443
No 454
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.39 E-value=1e-06 Score=73.33 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... +..|.++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~ 59 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLP----PRSGSIRF 59 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEE
Confidence 567999999999999999999998865 44454443
No 455
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.38 E-value=1.4e-06 Score=85.18 Aligned_cols=125 Identities=16% Similarity=0.108 Sum_probs=69.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-------------eEEEEeeCCc--EEEEEeCCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-------------MKTTVLKDGQ--VVNVIDTPGLFDL 82 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-------------~~~~~~~~~~--~~~l~DtpG~~~~ 82 (363)
++.+|+|+|++|+|||||++.|+|... +..|.+..+.. +.++.+ +.. .-++-|..-+++.
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~gl~~----p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q-~~~lf~gTi~eNi~l~~~ 578 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAGLYQ----PWSGEILFDGIPREEIPREVLANSVAMVDQ-DIFLFEGTVRDNLTLWDP 578 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCEeHHHCCHHHHHhheeEEec-CChhhhccHHHHhhCCCC
Confidence 467999999999999999999999876 55565554321 111111 100 0111122222222
Q ss_pred CCChHHHHHHHHHH-----HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 83 SAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 83 ~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
..+++++.+.+... +.....+.+..+ .+.+..+++++++++...+.++... +++++ ++.+|....
T Consensus 579 ~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i--~e~G~~LSGGQrQRiaLARall~~p---~iliLDEptS~LD~~te 651 (710)
T TIGR03796 579 TIPDADLVRACKDAAIHDVITSRPGGYDAEL--AEGGANLSGGQRQRLEIARALVRNP---SILILDEATSALDPETE 651 (710)
T ss_pred CCCHHHHHHHHHHhCCHHHHHhCcCccccee--ccCCCCCCHHHHHHHHHHHHHhhCC---CEEEEECccccCCHHHH
Confidence 23344443333221 111112333332 2334589999999999999888764 56665 567775443
No 456
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.38 E-value=1.1e-06 Score=71.50 Aligned_cols=27 Identities=19% Similarity=0.243 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999999765
No 457
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.38 E-value=2e-06 Score=72.18 Aligned_cols=27 Identities=37% Similarity=0.450 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGLEQ 51 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 557999999999999999999999765
No 458
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.38 E-value=2.2e-06 Score=75.91 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 27 ~Ge~~~llGpsGsGKSTLLr~IaGl~~ 53 (353)
T PRK10851 27 SGQMVALLGPSGSGKTTLLRIIAGLEH 53 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999999865
No 459
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.38 E-value=2.8e-06 Score=67.44 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 457999999999999999999999865
No 460
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.38 E-value=6.7e-07 Score=73.52 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 557999999999999999999999765
No 461
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.38 E-value=1.6e-06 Score=82.61 Aligned_cols=134 Identities=13% Similarity=0.164 Sum_probs=76.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee-EeEEEE---------eeCCcEE----EEEeCCCCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTV---------LKDGQVV----NVIDTPGLFDL 82 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~-~~~~~~---------~~~~~~~----~l~DtpG~~~~ 82 (363)
.++.+++|||++|||||||+|.|.+-.. +..|.+..+. .+..+. +..+... ++-|...++..
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~----~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~ 428 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYD----PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP 428 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC----CCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCC
Confidence 3567999999999999999999997765 4455544421 111110 0011111 12222233333
Q ss_pred CCChHHHHHHHHHH-----HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCcch
Q 017924 83 SAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHE 154 (363)
Q Consensus 83 ~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~~~ 154 (363)
..+++++.+.+... +.....+.|..+= +-+.++++++++++...+.+.... +++++ +...|..++
T Consensus 429 ~at~eei~~a~k~a~~~d~I~~lp~g~dt~vg--e~G~~LSgGQrQrlaiARall~~~---~ILILDEaTSalD~~tE-- 501 (567)
T COG1132 429 DATDEEIEEALKLANAHEFIANLPDGYDTIVG--ERGVNLSGGQRQRLAIARALLRNP---PILILDEATSALDTETE-- 501 (567)
T ss_pred CCCHHHHHHHHHHhChHHHHHhCcccccceec--CCCccCCHHHHHHHHHHHHHhcCC---CEEEEeccccccCHHhH--
Confidence 34555655555443 1111112233222 333589999999999999887654 66665 677887655
Q ss_pred hhHHHHh
Q 017924 155 KTLEDFL 161 (363)
Q Consensus 155 ~~l~~~~ 161 (363)
..+.+.+
T Consensus 502 ~~I~~~l 508 (567)
T COG1132 502 ALIQDAL 508 (567)
T ss_pred HHHHHHH
Confidence 4444444
No 462
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.37 E-value=5e-06 Score=71.03 Aligned_cols=36 Identities=36% Similarity=0.481 Sum_probs=28.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
.++..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~ 70 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLEK----PAQGTVSF 70 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEE
Confidence 3567999999999999999999999865 44454443
No 463
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=2.3e-06 Score=73.84 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13637 32 DGEFVGLIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 457999999999999999999999865
No 464
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=1.7e-06 Score=73.51 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 567999999999999999999999865
No 465
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=2.3e-06 Score=73.98 Aligned_cols=35 Identities=31% Similarity=0.359 Sum_probs=28.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~ 66 (290)
T PRK13634 32 SGSYVAIIGHTGSGKSTLLQHLNGLLQ----PTSGTVTI 66 (290)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC----CCCcEEEE
Confidence 457999999999999999999999865 44554443
No 466
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.37 E-value=4.1e-06 Score=71.63 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.++.
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~----p~~G~i~~ 72 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAGMIE----PTSGELLI 72 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC----CCCCEEEE
Confidence 457999999999999999999999875 44454433
No 467
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.37 E-value=1.6e-06 Score=82.87 Aligned_cols=123 Identities=15% Similarity=0.092 Sum_probs=67.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-------------eEEEEeeCCcEEEEEeCC----CCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-------------MKTTVLKDGQVVNVIDTP----GLF 80 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-------------~~~~~~~~~~~~~l~Dtp----G~~ 80 (363)
++.+|+|+|++|+|||||++.|+|... +..|.+..... +.++ .+....+-+|. .++
T Consensus 365 ~Ge~i~IvG~sGsGKSTLlklL~gl~~----p~~G~I~i~g~~i~~~~~~~~~~~i~~~---~Q~~~lf~~Ti~~Ni~~~ 437 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLLLRFYD----PQSGRILLDGVDLRQLDPAELRARMALV---PQDPVLFAASVMENIRYG 437 (576)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCCCEEEECCEEHHhcCHHHHHHhceEE---ccCCccccccHHHHHhcC
Confidence 567999999999999999999999866 44554443221 1111 11111111121 222
Q ss_pred CCCCChHHHHHHHHH-----HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 81 DLSAGSEFVGKEIVK-----CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
....+++++...+.. .+.....+.+.. +.+....+++++++++...+.++... +++++ ++.+|....
T Consensus 438 ~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~--i~~~g~~LSgGq~Qrl~laRal~~~~---~ililDEpts~lD~~~~ 512 (576)
T TIGR02204 438 RPDATDEEVEAAARAAHAHEFISALPEGYDTY--LGERGVTLSGGQRQRIAIARAILKDA---PILLLDEATSALDAESE 512 (576)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhCCCCCCce--eCCCCCcCCHHHHHHHHHHHHHHhCC---CeEEEeCcccccCHHHH
Confidence 222233333332222 111111222332 22334579999999999999887654 56665 677776543
No 468
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.37 E-value=1.6e-06 Score=72.09 Aligned_cols=27 Identities=33% Similarity=0.325 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999999765
No 469
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.37 E-value=0.00015 Score=70.98 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
..++|.|+|++||||+++++.
T Consensus 328 ~~~iITGpN~gGKTt~lktig 348 (782)
T PRK00409 328 TVLVITGPNTGGKTVTLKTLG 348 (782)
T ss_pred eEEEEECCCCCCcHHHHHHHH
Confidence 468999999999999999985
No 470
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.37 E-value=2.2e-06 Score=71.17 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999999765
No 471
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.36 E-value=9.6e-07 Score=72.07 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567999999999999999999999865
No 472
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.36 E-value=5.6e-07 Score=84.81 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|+|+||||||||+++|+|...
T Consensus 344 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~ 370 (530)
T PRK15064 344 AGERLAIIGENGVGKTTLLRTLVGELE 370 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999999865
No 473
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.36 E-value=3.1e-07 Score=82.11 Aligned_cols=43 Identities=19% Similarity=0.064 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHHhccccccceEEE----EeCCCCCCcchhhHHHHhcc
Q 017924 115 NRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~i~v----~n~~D~~~~~~~~l~~~~~~ 163 (363)
..++++-+.++.+.+.+|.. |.+++ +||+|.... .||++++..
T Consensus 220 ~~~SgGwrmR~aLAr~Lf~k----P~LLLLDEPtnhLDleA~--~wLee~L~k 266 (614)
T KOG0927|consen 220 KDLSGGWRMRAALARALFQK----PDLLLLDEPTNHLDLEAI--VWLEEYLAK 266 (614)
T ss_pred hccCchHHHHHHHHHHHhcC----CCEEEecCCccCCCHHHH--HHHHHHHHh
Confidence 36778888888888888876 56655 799999877 899999887
No 474
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.36 E-value=2.2e-06 Score=76.45 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+..++|+|+||||||||+++|+|...
T Consensus 39 ~Ge~~~LlGpsGsGKSTLLr~IaGl~~ 65 (375)
T PRK09452 39 NGEFLTLLGPSGCGKTTVLRLIAGFET 65 (375)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456999999999999999999999876
No 475
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.36 E-value=6.8e-06 Score=65.68 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 456999999999999999999999865
No 476
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.36 E-value=4.2e-06 Score=65.20 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=30.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE 59 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~ 59 (363)
++..|+++|++|||||||+|.++|-.. ++.|.++....
T Consensus 30 ~ge~vv~lGpSGcGKTTLLnl~AGf~~----P~~G~i~l~~r 67 (259)
T COG4525 30 SGELVVVLGPSGCGKTTLLNLIAGFVT----PSRGSIQLNGR 67 (259)
T ss_pred CCCEEEEEcCCCccHHHHHHHHhcCcC----cccceEEECCE
Confidence 346899999999999999999999877 66666655443
No 477
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.36 E-value=1.4e-06 Score=73.48 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 53 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKTR 53 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999999865
No 478
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=8.5e-07 Score=76.60 Aligned_cols=35 Identities=29% Similarity=0.290 Sum_probs=28.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||+|||||+++|+|... +..|.+..
T Consensus 32 ~Ge~~~iiG~NGaGKSTLl~~l~Gl~~----p~~G~i~~ 66 (287)
T PRK13641 32 EGSFVALVGHTGSGKSTLMQHFNALLK----PSSGTITI 66 (287)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEE
Confidence 456999999999999999999999876 55554444
No 479
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=2.2e-06 Score=74.50 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl~~ 58 (305)
T PRK13651 32 QGEFIAIIGQTGSGKTTFIEHLNALLL 58 (305)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456999999999999999999999865
No 480
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.35 E-value=1.1e-06 Score=76.52 Aligned_cols=36 Identities=36% Similarity=0.398 Sum_probs=28.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
.++..++|+|+||||||||+++|+|... ++.|.+..
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~~----~~~G~i~i 61 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYLP----PDSGSVQV 61 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEE
Confidence 3557999999999999999999999865 45554443
No 481
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.35 E-value=6.8e-06 Score=64.22 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 446999999999999999999998765
No 482
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.35 E-value=3.6e-06 Score=80.50 Aligned_cols=126 Identities=15% Similarity=0.144 Sum_probs=69.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE----------EEeeCCcEEEEEeCC----CCCCC-
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT----------TVLKDGQVVNVIDTP----GLFDL- 82 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~----------~~~~~~~~~~l~Dtp----G~~~~- 82 (363)
++.+++|+|++|+|||||+++|+|... +..|.+.....-.. +.+..+....+-+|. .+...
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~----p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 443 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYD----IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE 443 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCC
Confidence 467899999999999999999999876 55555444322100 000011112122222 11111
Q ss_pred CCChHHHHHHHHHH-----HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 83 SAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 83 ~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
...++++.+.+... +.....+.|..+ .+.+..+++++++++...+.++... +++++ ++.+|....
T Consensus 444 ~~~~~~i~~al~~~~l~~~i~~lp~Gldt~i--g~~g~~LSGGqrQRi~LARall~~~---~ililDEptsaLD~~t~ 516 (582)
T PRK11176 444 QYSREQIEEAARMAYAMDFINKMDNGLDTVI--GENGVLLSGGQRQRIAIARALLRDS---PILILDEATSALDTESE 516 (582)
T ss_pred CCCHHHHHHHHHHhCcHHHHHhcccccCcee--CCCCCcCCHHHHHHHHHHHHHHhCC---CEEEEECccccCCHHHH
Confidence 12333433332221 122222333332 2333579999999999999888764 56665 677776544
No 483
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.35 E-value=4.9e-06 Score=69.27 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 557999999999999999999999865
No 484
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.35 E-value=6e-06 Score=72.28 Aligned_cols=123 Identities=19% Similarity=0.179 Sum_probs=65.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccccccccc-CCCCCceeeEeE------------------EE----------EeeCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTKTCEMK------------------TT----------VLKDG 68 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~-~~~~~t~~~~~~------------------~~----------~~~~~ 68 (363)
++++|+|||++|+||||.+--|+.+..+.... .-+-+|+++... .. ....+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 47899999999999999998776443311111 111123222110 00 00124
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCC
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D 148 (363)
+.+.||||.|.... +.....++..++..+ ..++ +.+|++++ .-...-+..+. .|+.- ..--+++||+|
T Consensus 282 ~d~ILVDTaGrs~~---D~~~i~el~~~~~~~-~~i~-~~Lvlsat-~K~~dlkei~~----~f~~~--~i~~~I~TKlD 349 (407)
T COG1419 282 CDVILVDTAGRSQY---DKEKIEELKELIDVS-HSIE-VYLVLSAT-TKYEDLKEIIK----QFSLF--PIDGLIFTKLD 349 (407)
T ss_pred CCEEEEeCCCCCcc---CHHHHHHHHHHHhcc-ccce-EEEEEecC-cchHHHHHHHH----HhccC--CcceeEEEccc
Confidence 46789999997653 444456666666544 2333 34445554 21222222222 23221 12346789999
Q ss_pred CCCc
Q 017924 149 DLED 152 (363)
Q Consensus 149 ~~~~ 152 (363)
....
T Consensus 350 ET~s 353 (407)
T COG1419 350 ETTS 353 (407)
T ss_pred ccCc
Confidence 7754
No 485
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=2.4e-06 Score=73.16 Aligned_cols=27 Identities=22% Similarity=0.451 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567999999999999999999999865
No 486
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=2.8e-06 Score=73.44 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++.+++|+|+||+|||||+++|+|... +..|.++.
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~ 65 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGLLQ----PTEGKVTV 65 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC----CCCcEEEE
Confidence 456999999999999999999999865 45554443
No 487
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.35 E-value=2.9e-06 Score=68.53 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=79.5
Q ss_pred CCCCCCCCCccCCCCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe---------eC--CcE
Q 017924 2 GERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---------KD--GQV 70 (363)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~---------~~--~~~ 70 (363)
|+....++...... ++...+++|+|||||||++++|+|-.. ++.|.++....-..... .. ...
T Consensus 13 g~k~av~~isf~v~--~G~i~GllG~NGAGKTTtfRmILglle----~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k 86 (300)
T COG4152 13 GDKKAVDNISFEVP--PGEIFGLLGPNGAGKTTTFRMILGLLE----PTEGEITWNGGPLSQEIKNRIGYLPEERGLYPK 86 (300)
T ss_pred Cceeeecceeeeec--CCeEEEeecCCCCCccchHHHHhccCC----ccCceEEEcCcchhhhhhhhcccChhhhccCcc
Confidence 44444455544433 457899999999999999999998876 55555554332111111 00 123
Q ss_pred EEEEeCCCCCC--CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE----E
Q 017924 71 VNVIDTPGLFD--LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----F 144 (363)
Q Consensus 71 ~~l~DtpG~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v----~ 144 (363)
+++.|..-+.. -+....++.+.+..|+.+. ++.-+..+--..++.+....+..+..+... |-+++ +
T Consensus 87 ~tv~dql~yla~LkGm~~~e~~~~~~~wLer~----~i~~~~~~kIk~LSKGnqQKIQfisaviHe----PeLlILDEPF 158 (300)
T COG4152 87 MTVEDQLKYLAELKGMPKAEIQKKLQAWLERL----EIVGKKTKKIKELSKGNQQKIQFISAVIHE----PELLILDEPF 158 (300)
T ss_pred CcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----cccccccchHHHhhhhhhHHHHHHHHHhcC----CCEEEecCCc
Confidence 33444332211 1234455666666665433 333232221135677777778888877765 44544 4
Q ss_pred eCCCCCCcchhhHHHHhc
Q 017924 145 TGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 145 n~~D~~~~~~~~l~~~~~ 162 (363)
+-+|-... +.|.+.+.
T Consensus 159 SGLDPVN~--elLk~~I~ 174 (300)
T COG4152 159 SGLDPVNV--ELLKDAIF 174 (300)
T ss_pred cCCChhhH--HHHHHHHH
Confidence 66665544 55554443
No 488
>PRK13796 GTPase YqeH; Provisional
Probab=98.35 E-value=7.9e-07 Score=79.13 Aligned_cols=60 Identities=27% Similarity=0.253 Sum_probs=37.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccc---ccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAF---KASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
+.+++|||.+|+|||||||+|++.... ....+..+.|+...+ .+.. + ....++||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~-~~~l-~-~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI-EIPL-D-DGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE-EEEc-C-CCcEEEECCCccc
Confidence 468999999999999999999854310 111333444443332 2222 2 2246999999864
No 489
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.35 E-value=3.9e-06 Score=69.41 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||++.|.|-..
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~ 55 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNGLLK 55 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCcCc
Confidence 456999999999999999999998876
No 490
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.34 E-value=1.6e-06 Score=83.02 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=67.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-------------eEEEEeeCCcEE----EEEeCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-------------MKTTVLKDGQVV----NVIDTPGLF 80 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-------------~~~~~~~~~~~~----~l~DtpG~~ 80 (363)
++.+++|+|++|+|||||++.|+|... ..|.+..+.. +.++. +... ++-|..-++
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~p-----~~G~I~i~g~~i~~~~~~~lr~~i~~v~---Q~~~LF~~TI~eNI~~g 446 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFLP-----YQGSLKINGIELRELDPESWRKHLSWVG---QNPQLPHGTLRDNVLLG 446 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-----CCcEEEECCEecccCCHHHHHhheEEec---CCCcCCCcCHHHHhhcC
Confidence 567999999999999999999998652 2344443321 11111 1111 111222222
Q ss_pred CCCCChHHHHHHHHHH-----HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 81 DLSAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
....+++++.+.+..+ +.....+.|.. +-+-+..+++++++++...+.++.+. +++++ ++.+|....
T Consensus 447 ~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~--vge~G~~LSGGQrQRialARAll~~~---~IliLDE~TSaLD~~te 521 (588)
T PRK11174 447 NPDASDEQLQQALENAWVSEFLPLLPQGLDTP--IGDQAAGLSVGQAQRLALARALLQPC---QLLLLDEPTASLDAHSE 521 (588)
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHhcccccccc--cccCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCccCCCHHHH
Confidence 2233444444433332 11111122332 22333589999999999999888754 56665 677776544
No 491
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.34 E-value=4.2e-07 Score=71.65 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||++.|+|...
T Consensus 26 pGev~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 26 PGEVLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred CCcEEEEECCCCccHHHHHHHhhCccC
Confidence 457999999999999999999999876
No 492
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.34 E-value=2.4e-06 Score=74.79 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=54.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeC----------------CcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKD----------------GQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~~~ 82 (363)
.+++|||.+++|||||+|+|++..... ....+ +|.......+.+.+ ...+.++|.||+...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~--~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNE--AANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccc--cCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 689999999999999999999775411 22212 22333333333322 125789999998753
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
.....-++..+...+ ..+|++++|+++.
T Consensus 81 As~g~Glgn~fL~~i----r~~d~l~hVvr~f 108 (368)
T TIGR00092 81 ASKGEGLGNQFLANI----REVDIIQHVVRCF 108 (368)
T ss_pred hhcccCcchHHHHHH----HhCCEEEEEEeCC
Confidence 222222334444443 4679999999863
No 493
>PLN03073 ABC transporter F family; Provisional
Probab=98.34 E-value=4.5e-07 Score=87.49 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=27.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t 55 (363)
++.+|+|+|+||||||||+++|+|... +..|.+.
T Consensus 534 ~Ge~i~LvG~NGsGKSTLLk~L~Gll~----p~~G~I~ 567 (718)
T PLN03073 534 LDSRIAMVGPNGIGKSTILKLISGELQ----PSSGTVF 567 (718)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC----CCCceEE
Confidence 456999999999999999999999865 4555444
No 494
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=3.2e-06 Score=75.53 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 44 ~Ge~~~llGpsGsGKSTLLr~IaGl~~ 70 (377)
T PRK11607 44 KGEIFALLGASGCGKSTLLRMLAGFEQ 70 (377)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456999999999999999999999876
No 495
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.34 E-value=1.9e-06 Score=81.55 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=28.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t 55 (363)
.++.+++|+|+||||||||+++|+|... +..|.+.
T Consensus 29 ~~Ge~~~liG~NGsGKSTLl~~i~G~~~----p~~G~i~ 63 (552)
T TIGR03719 29 FPGAKIGVLGLNGAGKSTLLRIMAGVDK----EFNGEAR 63 (552)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC----CCCceEE
Confidence 3456999999999999999999999865 4445443
No 496
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.34 E-value=3e-06 Score=70.41 Aligned_cols=34 Identities=32% Similarity=0.393 Sum_probs=27.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t 55 (363)
++..++|+|+||+|||||+++|+|... +..|.+.
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~----p~~G~i~ 80 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIYP----PDSGTVT 80 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEE
Confidence 457999999999999999999999765 4445443
No 497
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.33 E-value=1.9e-06 Score=70.31 Aligned_cols=27 Identities=30% Similarity=0.561 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.++..++|+|+||+|||||+++|+|..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 355799999999999999999999973
No 498
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.33 E-value=1.6e-06 Score=83.04 Aligned_cols=125 Identities=17% Similarity=0.146 Sum_probs=67.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE----------EEeeCCcEEEEEe----CCCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT----------TVLKDGQVVNVID----TPGLFDLS 83 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~----------~~~~~~~~~~l~D----tpG~~~~~ 83 (363)
++.+|+|+|++|+|||||++.|+|... +..|.+..+..-.. +.+..+....+-+ ...++. .
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~----p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~ 440 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLLMGYYP----LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-D 440 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC----CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-C
Confidence 567999999999999999999999876 55555444322100 0000111111111 111122 1
Q ss_pred CChHHHHHHHHHH-----HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 84 AGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 84 ~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
..+.++.+.+... +.....+.|..+ ...+..+++++++++...+.++... +++++ ++.+|....
T Consensus 441 ~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i--~e~g~~LSGGqrQRialARaLl~~~---~illlDEpts~LD~~t~ 512 (592)
T PRK10790 441 ISEEQVWQALETVQLAELARSLPDGLYTPL--GEQGNNLSVGQKQLLALARVLVQTP---QILILDEATANIDSGTE 512 (592)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccccc--cCCCCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCcccCCHHHH
Confidence 2333333322221 111112333332 2233589999999999999888654 56665 566665443
No 499
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=7.1e-07 Score=80.04 Aligned_cols=124 Identities=16% Similarity=0.048 Sum_probs=68.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee-------------EeEEEEeeCCcEEEEEeCC----CCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-------------EMKTTVLKDGQVVNVIDTP----GLF 80 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~-------------~~~~~~~~~~~~~~l~Dtp----G~~ 80 (363)
.+.+|+|||.|||||||++++|++-..+ .|.+-++. .+..+ .+....+-||. ..+
T Consensus 377 kGekVaIvG~nGsGKSTilr~LlrF~d~-----sG~I~IdG~dik~~~~~SlR~~Ig~V---PQd~~LFndTIl~NI~YG 448 (591)
T KOG0057|consen 377 KGEKVAIVGSNGSGKSTILRLLLRFFDY-----SGSILIDGQDIKEVSLESLRQSIGVV---PQDSVLFNDTILYNIKYG 448 (591)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcc-----CCcEEECCeeHhhhChHHhhhheeEe---CCcccccchhHHHHhhcC
Confidence 3569999999999999999999865432 12222211 11122 12222244443 233
Q ss_pred CCCCChHHHHHHHHHHHh-ccC-CCccE-EEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 81 DLSAGSEFVGKEIVKCLG-MAK-DGIHA-FLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~-~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
....+.+++.+...++-. -.. .-.++ .-.|..-...+++++++.+..++..+... +++++ ++++|..++
T Consensus 449 n~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda---~Il~~DEaTS~LD~~TE 523 (591)
T KOG0057|consen 449 NPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA---PILLLDEATSALDSETE 523 (591)
T ss_pred CCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC---CeEEecCcccccchhhH
Confidence 444556665555444310 000 00011 11222333578999999999998887654 66665 678876654
No 500
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.32 E-value=2.5e-06 Score=72.85 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||+|||||+++|+|...
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 29 HGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 567999999999999999999999865
Done!