Query 017924
Match_columns 363
No_of_seqs 286 out of 3600
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 07:06:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxx_A GTPase IMAP family memb 99.9 1.2E-26 4E-31 194.5 19.6 205 15-225 25-229 (239)
2 3lxw_A GTPase IMAP family memb 99.9 3.7E-26 1.3E-30 191.7 21.8 207 16-228 18-226 (247)
3 2xtp_A GTPase IMAP family memb 99.9 4.3E-24 1.5E-28 181.3 24.3 201 16-222 19-220 (260)
4 3iev_A GTP-binding protein ERA 99.8 1.5E-19 5.2E-24 156.3 13.9 175 14-210 5-182 (308)
5 1wf3_A GTP-binding protein; GT 99.8 7.5E-19 2.6E-23 151.0 16.2 165 19-209 7-172 (301)
6 4dhe_A Probable GTP-binding pr 99.8 5.8E-18 2E-22 140.1 18.2 176 17-209 27-210 (223)
7 1svi_A GTP-binding protein YSX 99.8 8.7E-17 3E-21 130.1 19.4 170 17-208 21-193 (195)
8 3def_A T7I23.11 protein; chlor 99.8 4.3E-17 1.5E-21 137.9 17.3 142 18-163 35-177 (262)
9 1h65_A Chloroplast outer envel 99.7 4.6E-17 1.6E-21 138.4 17.3 142 18-163 38-180 (270)
10 3pqc_A Probable GTP-binding pr 99.7 1.4E-16 4.9E-21 128.7 19.0 171 17-209 21-193 (195)
11 1ega_A Protein (GTP-binding pr 99.7 3.8E-17 1.3E-21 140.7 13.4 166 18-209 7-174 (301)
12 3t5d_A Septin-7; GTP-binding p 99.7 1.7E-16 5.8E-21 135.2 14.7 171 19-208 8-202 (274)
13 2lkc_A Translation initiation 99.7 2.9E-16 9.9E-21 125.0 14.0 166 17-210 6-171 (178)
14 2gj8_A MNME, tRNA modification 99.7 7E-17 2.4E-21 127.8 8.9 161 18-208 3-164 (172)
15 4bas_A ADP-ribosylation factor 99.7 2.2E-15 7.6E-20 122.1 17.2 168 15-210 13-189 (199)
16 2hjg_A GTP-binding protein ENG 99.7 2.1E-16 7.1E-21 143.5 12.1 175 18-211 174-350 (436)
17 4dcu_A GTP-binding protein ENG 99.7 3.6E-16 1.2E-20 142.7 13.7 177 17-212 193-371 (456)
18 2qu8_A Putative nucleolar GTP- 99.7 2.4E-15 8.2E-20 124.7 17.5 174 18-209 28-204 (228)
19 3k53_A Ferrous iron transport 99.7 2.2E-14 7.4E-19 122.0 23.7 164 20-211 4-167 (271)
20 3iby_A Ferrous iron transport 99.7 3.8E-16 1.3E-20 131.1 12.4 161 20-207 2-164 (256)
21 2dyk_A GTP-binding protein; GT 99.7 1.7E-15 5.7E-20 118.4 13.9 158 20-207 2-159 (161)
22 1upt_A ARL1, ADP-ribosylation 99.7 4.7E-15 1.6E-19 117.0 16.5 162 18-209 6-168 (171)
23 2j69_A Bacterial dynamin-like 99.7 5.2E-15 1.8E-19 141.0 19.6 123 18-152 68-245 (695)
24 3i8s_A Ferrous iron transport 99.7 5.9E-16 2E-20 131.6 11.5 177 19-222 3-183 (274)
25 1zd9_A ADP-ribosylation factor 99.6 2.2E-15 7.4E-20 121.1 13.7 160 18-208 21-183 (188)
26 1ksh_A ARF-like protein 2; sma 99.6 4.7E-15 1.6E-19 118.9 15.7 163 17-210 16-180 (186)
27 3a1s_A Iron(II) transport prot 99.6 6.7E-15 2.3E-19 123.8 16.8 162 19-209 5-166 (258)
28 4dsu_A GTPase KRAS, isoform 2B 99.6 2.7E-15 9.2E-20 120.5 13.7 159 18-209 3-165 (189)
29 3tw8_B RAS-related protein RAB 99.6 1.8E-15 6.1E-20 120.6 12.5 160 18-209 8-170 (181)
30 2fh5_B SR-beta, signal recogni 99.6 3.7E-15 1.3E-19 122.3 14.6 120 17-152 5-130 (214)
31 3reg_A RHO-like small GTPase; 99.6 1.1E-15 3.9E-20 123.4 11.3 161 17-210 21-188 (194)
32 3gee_A MNME, tRNA modification 99.6 1.9E-15 6.5E-20 137.4 13.7 165 19-209 233-397 (476)
33 2j1l_A RHO-related GTP-binding 99.6 9E-15 3.1E-19 120.0 16.3 167 18-210 33-209 (214)
34 3con_A GTPase NRAS; structural 99.6 9.1E-15 3.1E-19 117.6 15.9 159 19-210 21-183 (190)
35 2h57_A ADP-ribosylation factor 99.6 2.8E-15 9.5E-20 120.6 12.7 165 17-209 19-186 (190)
36 3tkl_A RAS-related protein RAB 99.6 2.8E-15 9.6E-20 121.2 12.5 161 19-210 16-179 (196)
37 1mky_A Probable GTP-binding pr 99.6 3.5E-15 1.2E-19 135.6 14.4 177 18-211 179-356 (439)
38 1mky_A Probable GTP-binding pr 99.6 4E-15 1.4E-19 135.2 14.6 165 20-210 2-166 (439)
39 4gzl_A RAS-related C3 botulinu 99.6 2.3E-15 8E-20 122.5 11.7 165 16-206 27-201 (204)
40 2il1_A RAB12; G-protein, GDP, 99.6 2.9E-15 9.8E-20 120.8 12.0 163 17-209 24-189 (192)
41 3q72_A GTP-binding protein RAD 99.6 5E-15 1.7E-19 116.3 12.8 161 19-210 2-164 (166)
42 1z08_A RAS-related protein RAB 99.6 5.3E-15 1.8E-19 116.6 12.9 159 19-208 6-167 (170)
43 3t5g_A GTP-binding protein RHE 99.6 7.6E-15 2.6E-19 117.0 14.0 161 18-210 5-169 (181)
44 1zj6_A ADP-ribosylation factor 99.6 5.6E-15 1.9E-19 118.5 13.3 160 18-208 15-176 (187)
45 3geh_A MNME, tRNA modification 99.6 1.3E-15 4.6E-20 137.8 10.6 161 19-210 224-384 (462)
46 1r8s_A ADP-ribosylation factor 99.6 7.4E-15 2.5E-19 115.1 13.5 158 20-208 1-160 (164)
47 1kao_A RAP2A; GTP-binding prot 99.6 1E-14 3.5E-19 114.5 14.1 160 19-209 3-165 (167)
48 2gf9_A RAS-related protein RAB 99.6 3.6E-15 1.2E-19 119.9 11.7 162 18-209 21-184 (189)
49 1wms_A RAB-9, RAB9, RAS-relate 99.6 2.4E-14 8.3E-19 113.6 16.3 162 18-209 6-173 (177)
50 3cph_A RAS-related protein SEC 99.6 3.9E-15 1.4E-19 122.0 11.8 161 17-209 18-181 (213)
51 3oes_A GTPase rhebl1; small GT 99.6 5.6E-15 1.9E-19 120.0 12.6 164 16-210 21-187 (201)
52 2wji_A Ferrous iron transport 99.6 5.9E-15 2E-19 115.8 12.0 160 19-207 3-162 (165)
53 3clv_A RAB5 protein, putative; 99.6 1E-14 3.5E-19 118.8 13.8 158 18-209 6-203 (208)
54 1g16_A RAS-related protein SEC 99.6 3.1E-15 1.1E-19 117.9 10.4 160 19-210 3-165 (170)
55 2g6b_A RAS-related protein RAB 99.6 1.5E-14 5.2E-19 115.1 14.5 161 19-209 10-173 (180)
56 1jwy_B Dynamin A GTPase domain 99.6 7.7E-15 2.6E-19 127.8 13.8 127 67-210 129-262 (315)
57 2bcg_Y Protein YP2, GTP-bindin 99.6 1.3E-14 4.3E-19 118.4 14.2 161 19-210 8-171 (206)
58 2bme_A RAB4A, RAS-related prot 99.6 1.7E-14 5.8E-19 115.5 14.6 159 19-208 10-171 (186)
59 2wjg_A FEOB, ferrous iron tran 99.6 1.5E-14 5.2E-19 116.0 14.3 164 18-210 6-169 (188)
60 1u8z_A RAS-related protein RAL 99.6 8.5E-15 2.9E-19 115.1 12.6 159 18-208 3-165 (168)
61 1z0j_A RAB-22, RAS-related pro 99.6 3.1E-15 1.1E-19 117.9 10.1 160 19-208 6-167 (170)
62 1zbd_A Rabphilin-3A; G protein 99.6 6.8E-15 2.3E-19 119.6 12.3 159 20-208 9-169 (203)
63 2q3h_A RAS homolog gene family 99.6 2.2E-14 7.5E-19 116.4 15.2 165 17-208 18-193 (201)
64 1ky3_A GTP-binding protein YPT 99.6 1.5E-14 5E-19 115.4 13.9 165 17-208 6-176 (182)
65 2efe_B Small GTP-binding prote 99.6 4.5E-15 1.5E-19 118.4 10.6 161 18-208 11-173 (181)
66 2b6h_A ADP-ribosylation factor 99.6 1.2E-14 4.2E-19 117.0 13.2 163 15-208 25-189 (192)
67 1moz_A ARL1, ADP-ribosylation 99.6 1.1E-14 3.9E-19 116.2 12.9 162 17-209 16-179 (183)
68 1ek0_A Protein (GTP-binding pr 99.6 4.8E-15 1.6E-19 116.8 10.5 159 19-207 3-166 (170)
69 2gco_A H9, RHO-related GTP-bin 99.6 1.8E-14 6.1E-19 117.0 14.2 167 17-208 23-198 (201)
70 2ew1_A RAS-related protein RAB 99.6 1.7E-14 5.7E-19 117.0 13.9 159 19-208 26-187 (201)
71 2bov_A RAla, RAS-related prote 99.6 1.7E-14 5.9E-19 117.5 14.0 160 17-208 12-175 (206)
72 3bc1_A RAS-related protein RAB 99.6 2E-14 6.9E-19 115.9 14.3 161 19-208 11-183 (195)
73 1z0f_A RAB14, member RAS oncog 99.6 4.4E-15 1.5E-19 118.1 10.2 160 18-208 14-176 (179)
74 3dz8_A RAS-related protein RAB 99.6 3.3E-15 1.1E-19 120.3 9.3 161 20-210 24-186 (191)
75 2nzj_A GTP-binding protein REM 99.6 2.1E-14 7.1E-19 113.8 13.8 164 17-209 2-168 (175)
76 2p5s_A RAS and EF-hand domain 99.6 2.4E-15 8.3E-20 121.9 8.5 167 17-208 26-195 (199)
77 2h17_A ADP-ribosylation factor 99.6 1.1E-14 3.9E-19 116.0 12.3 158 18-206 20-179 (181)
78 2a9k_A RAS-related protein RAL 99.6 1.5E-14 5.1E-19 115.9 13.1 160 18-209 17-180 (187)
79 1wb1_A Translation elongation 99.6 2.6E-14 9E-19 130.7 16.2 165 19-210 19-189 (482)
80 2gf0_A GTP-binding protein DI- 99.6 1.2E-14 3.9E-19 117.9 12.4 161 18-210 7-171 (199)
81 3llu_A RAS-related GTP-binding 99.6 2.2E-14 7.5E-19 115.9 13.9 169 16-206 17-193 (196)
82 2x77_A ADP-ribosylation factor 99.6 1.9E-14 6.7E-19 115.5 13.5 163 17-210 20-184 (189)
83 2ce2_X GTPase HRAS; signaling 99.6 2.2E-14 7.4E-19 112.5 13.5 156 20-208 4-163 (166)
84 1vg8_A RAS-related protein RAB 99.6 1.9E-14 6.3E-19 117.4 13.5 163 18-209 7-174 (207)
85 1fzq_A ADP-ribosylation factor 99.6 2.4E-14 8.1E-19 114.2 13.8 161 17-208 14-176 (181)
86 2e87_A Hypothetical protein PH 99.6 1.4E-13 4.8E-18 121.6 20.1 166 18-209 166-335 (357)
87 2fv8_A H6, RHO-related GTP-bin 99.6 2.2E-14 7.4E-19 117.0 13.8 166 18-209 24-199 (207)
88 2fg5_A RAB-22B, RAS-related pr 99.6 5E-15 1.7E-19 119.3 9.9 161 18-208 22-184 (192)
89 2hup_A RAS-related protein RAB 99.6 2.2E-14 7.5E-19 116.4 13.7 161 19-210 29-193 (201)
90 2erx_A GTP-binding protein DI- 99.6 1.5E-14 5.3E-19 114.1 12.5 159 19-208 3-165 (172)
91 2oil_A CATX-8, RAS-related pro 99.6 5E-15 1.7E-19 119.4 9.6 160 19-208 25-186 (193)
92 1mh1_A RAC1; GTP-binding, GTPa 99.6 2.8E-14 9.4E-19 114.2 13.9 164 18-208 4-178 (186)
93 2fu5_C RAS-related protein RAB 99.6 7.5E-15 2.6E-19 117.3 10.4 159 19-208 8-169 (183)
94 1c1y_A RAS-related protein RAP 99.6 1.7E-14 5.9E-19 113.3 12.3 160 19-208 3-165 (167)
95 3o47_A ADP-ribosylation factor 99.6 4E-15 1.4E-19 129.8 9.4 161 18-208 164-325 (329)
96 2atx_A Small GTP binding prote 99.6 4.3E-14 1.5E-18 114.0 14.9 164 18-208 17-191 (194)
97 2fn4_A P23, RAS-related protei 99.6 1.5E-14 5.3E-19 115.2 12.1 162 17-210 7-172 (181)
98 1z06_A RAS-related protein RAB 99.6 2.2E-14 7.5E-19 115.2 12.9 161 18-208 19-186 (189)
99 2o52_A RAS-related protein RAB 99.6 1.4E-14 4.8E-19 117.5 11.9 160 18-208 24-186 (200)
100 3ihw_A Centg3; RAS, centaurin, 99.6 4.8E-14 1.6E-18 112.7 14.7 160 16-209 17-179 (184)
101 1r2q_A RAS-related protein RAB 99.6 5E-15 1.7E-19 116.7 8.9 160 19-208 6-167 (170)
102 3cpj_B GTP-binding protein YPT 99.6 1.1E-14 3.9E-19 120.2 11.4 160 19-209 13-175 (223)
103 1m2o_B GTP-binding protein SAR 99.6 1.3E-14 4.5E-19 116.6 11.3 166 17-206 21-188 (190)
104 2qag_B Septin-6, protein NEDD5 99.6 4.3E-15 1.5E-19 131.6 9.2 134 22-163 45-200 (427)
105 2y8e_A RAB-protein 6, GH09086P 99.6 1E-14 3.5E-19 116.0 10.5 160 18-208 13-175 (179)
106 3q3j_B RHO-related GTP-binding 99.6 2.4E-14 8.1E-19 117.4 12.9 168 17-209 25-202 (214)
107 1x3s_A RAS-related protein RAB 99.6 6.6E-15 2.3E-19 118.9 9.5 162 19-210 15-178 (195)
108 3kkq_A RAS-related protein M-R 99.6 1.7E-14 5.7E-19 115.3 11.7 161 17-209 16-181 (183)
109 2a5j_A RAS-related protein RAB 99.6 9.7E-15 3.3E-19 117.6 10.4 159 19-208 21-182 (191)
110 1z2a_A RAS-related protein RAB 99.6 1.1E-14 3.7E-19 114.5 10.0 160 18-208 4-165 (168)
111 3b1v_A Ferrous iron uptake tra 99.6 3.9E-14 1.3E-18 119.7 13.9 161 19-209 3-163 (272)
112 2yc2_C IFT27, small RAB-relate 99.6 1.5E-14 5.2E-19 118.0 10.8 162 18-208 19-190 (208)
113 1xzp_A Probable tRNA modificat 99.6 1.1E-14 3.6E-19 132.6 10.3 158 19-208 243-403 (482)
114 2hjg_A GTP-binding protein ENG 99.6 4.2E-15 1.4E-19 134.9 7.2 161 20-209 4-164 (436)
115 2hxs_A RAB-26, RAS-related pro 99.6 1.7E-14 5.8E-19 114.7 9.9 164 17-209 4-172 (178)
116 3bwd_D RAC-like GTP-binding pr 99.6 1.7E-14 5.7E-19 115.1 9.8 165 18-208 7-179 (182)
117 3t34_A Dynamin-related protein 99.5 3.6E-15 1.2E-19 132.0 6.4 128 20-152 35-218 (360)
118 2qag_C Septin-7; cell cycle, c 99.5 1.7E-14 5.9E-19 128.5 10.8 150 20-182 32-205 (418)
119 4djt_A GTP-binding nuclear pro 99.5 4.8E-15 1.6E-19 122.0 6.8 166 18-213 10-178 (218)
120 4dcu_A GTP-binding protein ENG 99.5 4.7E-15 1.6E-19 135.3 7.3 160 20-208 24-183 (456)
121 3t1o_A Gliding protein MGLA; G 99.5 1.7E-14 5.9E-19 116.7 9.8 164 18-209 13-191 (198)
122 3q85_A GTP-binding protein REM 99.5 3E-14 1E-18 112.2 10.9 162 20-210 3-167 (169)
123 1pui_A ENGB, probable GTP-bind 99.5 2.4E-13 8.4E-18 111.0 16.7 172 17-209 24-198 (210)
124 1kk1_A EIF2gamma; initiation o 99.5 1.9E-13 6.5E-18 123.0 17.4 167 18-209 9-199 (410)
125 1f6b_A SAR1; gtpases, N-termin 99.5 5.4E-14 1.9E-18 113.8 12.4 167 17-206 23-195 (198)
126 2qtf_A Protein HFLX, GTP-bindi 99.5 2.6E-13 8.9E-18 119.4 17.2 170 21-210 181-354 (364)
127 1m7b_A RND3/RHOE small GTP-bin 99.5 1.8E-13 6.3E-18 109.3 14.9 167 18-208 6-181 (184)
128 2cxx_A Probable GTP-binding pr 99.5 7.5E-14 2.6E-18 112.1 12.7 169 20-210 2-184 (190)
129 2iwr_A Centaurin gamma 1; ANK 99.5 5.3E-14 1.8E-18 111.8 11.6 156 18-208 6-167 (178)
130 2f7s_A C25KG, RAS-related prot 99.5 1.6E-13 5.4E-18 112.8 14.8 157 19-208 25-197 (217)
131 1s0u_A EIF-2-gamma, translatio 99.5 3.2E-13 1.1E-17 121.4 17.9 166 18-209 7-197 (408)
132 4dkx_A RAS-related protein RAB 99.5 3.1E-14 1.1E-18 116.2 10.1 157 19-208 13-174 (216)
133 3j2k_7 ERF3, eukaryotic polype 99.5 9.7E-14 3.3E-18 125.6 14.4 167 15-202 13-217 (439)
134 2j0v_A RAC-like GTP-binding pr 99.5 6.9E-14 2.3E-18 114.5 12.1 166 18-210 8-180 (212)
135 1gwn_A RHO-related GTP-binding 99.5 2.1E-13 7.3E-18 110.8 14.8 167 18-208 27-202 (205)
136 1lnz_A SPO0B-associated GTP-bi 99.5 3.3E-14 1.1E-18 123.8 10.4 169 21-212 160-332 (342)
137 3sjy_A Translation initiation 99.5 5.2E-14 1.8E-18 126.4 12.0 168 17-209 6-191 (403)
138 2qag_A Septin-2, protein NEDD5 99.5 1.6E-13 5.3E-18 121.0 14.7 133 20-160 38-195 (361)
139 2aka_B Dynamin-1; fusion prote 99.5 3E-13 1E-17 116.8 16.2 174 18-207 25-250 (299)
140 3p26_A Elongation factor 1 alp 99.5 9E-14 3.1E-18 127.7 13.5 157 18-199 32-227 (483)
141 3zvr_A Dynamin-1; hydrolase, D 99.5 3.9E-13 1.3E-17 127.2 17.8 165 20-206 52-274 (772)
142 2atv_A RERG, RAS-like estrogen 99.5 2.5E-13 8.5E-18 109.7 14.4 159 17-208 26-189 (196)
143 2x2e_A Dynamin-1; nitration, h 99.5 3.6E-13 1.2E-17 118.8 16.6 171 20-206 32-254 (353)
144 3r7w_A Gtpase1, GTP-binding pr 99.5 3.3E-13 1.1E-17 116.6 15.7 126 19-152 3-130 (307)
145 3cbq_A GTP-binding protein REM 99.5 1E-13 3.4E-18 111.9 11.7 164 17-210 21-188 (195)
146 1zun_B Sulfate adenylate trans 99.5 1.3E-13 4.6E-18 124.9 13.8 159 17-199 22-213 (434)
147 3gj0_A GTP-binding nuclear pro 99.5 1.3E-14 4.3E-19 119.7 6.4 161 17-211 13-176 (221)
148 3lvq_E ARF-GAP with SH3 domain 99.5 7.1E-14 2.4E-18 129.4 12.0 163 18-210 321-484 (497)
149 3qq5_A Small GTP-binding prote 99.5 2.7E-14 9.3E-19 127.6 8.7 166 16-210 31-196 (423)
150 2zej_A Dardarin, leucine-rich 99.5 1.6E-13 5.5E-18 109.7 12.3 165 20-209 3-177 (184)
151 1d2e_A Elongation factor TU (E 99.5 4.7E-13 1.6E-17 119.8 16.4 164 19-209 3-194 (397)
152 3c5c_A RAS-like protein 12; GD 99.5 3.8E-13 1.3E-17 107.7 14.2 160 17-208 19-184 (187)
153 3tr5_A RF-3, peptide chain rel 99.5 5.9E-14 2E-18 129.3 10.6 117 19-152 13-149 (528)
154 3l0i_B RAS-related protein RAB 99.5 1.7E-15 5.8E-20 122.8 0.1 159 19-208 33-194 (199)
155 2c78_A Elongation factor TU-A; 99.5 1.7E-13 5.7E-18 123.2 12.6 118 17-151 9-142 (405)
156 2g3y_A GTP-binding protein GEM 99.5 6.2E-13 2.1E-17 108.2 14.2 162 19-209 37-202 (211)
157 2elf_A Protein translation elo 99.5 2.7E-13 9.3E-18 119.6 12.8 149 21-209 23-179 (370)
158 3izq_1 HBS1P, elongation facto 99.5 2.8E-13 9.7E-18 127.0 12.4 159 17-200 165-362 (611)
159 3izy_P Translation initiation 99.4 6.3E-15 2.1E-19 135.1 -0.2 163 20-209 5-167 (537)
160 1jny_A EF-1-alpha, elongation 99.4 4.8E-13 1.6E-17 121.2 11.9 139 18-177 5-181 (435)
161 2f9l_A RAB11B, member RAS onco 99.4 6.5E-13 2.2E-17 107.5 11.3 159 20-209 6-167 (199)
162 3sop_A Neuronal-specific septi 99.4 8.8E-13 3E-17 111.2 12.0 151 20-183 3-179 (270)
163 2ged_A SR-beta, signal recogni 99.4 2.8E-13 9.5E-18 109.1 8.6 130 17-163 46-180 (193)
164 3th5_A RAS-related C3 botulinu 99.2 1.1E-14 3.6E-19 118.6 0.0 165 17-206 28-201 (204)
165 2wkq_A NPH1-1, RAS-related C3 99.4 1.7E-12 5.8E-17 113.8 13.7 164 19-208 155-328 (332)
166 2cjw_A GTP-binding protein GEM 99.4 1.8E-12 6.1E-17 104.2 11.6 161 19-208 6-170 (192)
167 1f60_A Elongation factor EEF1A 99.4 1.4E-12 4.9E-17 118.6 12.1 139 18-177 6-180 (458)
168 1oix_A RAS-related protein RAB 99.4 1.7E-12 5.8E-17 104.3 11.1 157 20-207 30-189 (191)
169 2qpt_A EH domain-containing pr 99.4 1E-12 3.5E-17 121.9 10.6 137 17-163 63-242 (550)
170 1g7s_A Translation initiation 99.4 2.7E-12 9.3E-17 119.6 13.5 114 20-151 6-136 (594)
171 3cb4_D GTP-binding protein LEP 99.4 1.3E-12 4.5E-17 121.6 10.9 161 20-210 5-182 (599)
172 2qnr_A Septin-2, protein NEDD5 99.4 6.9E-12 2.3E-16 107.7 14.1 170 20-209 19-213 (301)
173 2ywe_A GTP-binding protein LEP 99.4 1.8E-12 6.2E-17 120.5 11.0 160 20-209 7-183 (600)
174 3avx_A Elongation factor TS, e 99.4 1.5E-11 5E-16 120.2 17.6 165 17-208 294-484 (1289)
175 1zo1_I IF2, translation initia 99.4 4.4E-14 1.5E-18 128.4 -0.2 160 19-206 4-163 (501)
176 1nrj_B SR-beta, signal recogni 99.4 3.6E-12 1.2E-16 104.7 11.2 121 17-152 10-135 (218)
177 1udx_A The GTP-binding protein 99.4 8.9E-12 3.1E-16 111.0 14.4 168 20-211 158-326 (416)
178 4a9a_A Ribosome-interacting GT 99.4 4.5E-12 1.5E-16 111.0 11.9 122 19-150 72-195 (376)
179 2www_A Methylmalonic aciduria 99.3 2.1E-11 7.3E-16 106.9 15.0 113 67-209 165-278 (349)
180 3mca_A HBS1, elongation factor 99.3 1.6E-13 5.6E-18 128.3 1.4 157 17-198 175-371 (592)
181 3vqt_A RF-3, peptide chain rel 99.3 1.3E-11 4.3E-16 114.4 13.4 117 19-152 31-167 (548)
182 2p67_A LAO/AO transport system 99.3 2.2E-11 7.4E-16 106.7 14.2 113 67-209 147-260 (341)
183 3dpu_A RAB family protein; roc 99.3 1.3E-12 4.4E-17 121.7 6.3 159 17-210 39-208 (535)
184 1r5b_A Eukaryotic peptide chai 99.3 4.4E-12 1.5E-16 115.7 9.6 119 17-151 41-195 (467)
185 3p32_A Probable GTPase RV1496/ 99.3 7.7E-12 2.6E-16 110.2 10.7 114 67-210 170-284 (355)
186 1wxq_A GTP-binding protein; st 99.3 1.3E-11 4.3E-16 109.9 11.7 89 20-115 1-113 (397)
187 2h5e_A Peptide chain release f 99.3 1E-11 3.6E-16 114.5 11.1 117 19-152 13-149 (529)
188 2dy1_A Elongation factor G; tr 99.3 3.5E-11 1.2E-15 114.4 14.1 117 17-150 7-139 (665)
189 2xex_A Elongation factor G; GT 99.3 1.2E-11 4.2E-16 117.9 10.5 118 18-152 9-142 (693)
190 1dar_A EF-G, elongation factor 99.2 2.9E-11 9.9E-16 115.3 11.4 118 18-152 11-144 (691)
191 2qm8_A GTPase/ATPase; G protei 99.2 9.8E-11 3.4E-15 102.1 13.6 113 67-209 146-260 (337)
192 3c5h_A Glucocorticoid receptor 99.2 7E-11 2.4E-15 99.2 10.6 87 103-208 162-253 (255)
193 2rdo_7 EF-G, elongation factor 99.2 1.5E-10 5.3E-15 110.4 14.0 119 17-152 8-149 (704)
194 3r7w_B Gtpase2, GTP-binding pr 99.2 5.2E-10 1.8E-14 95.6 14.6 118 21-152 1-121 (331)
195 3j25_A Tetracycline resistance 99.2 3.5E-11 1.2E-15 113.8 8.0 116 20-152 3-134 (638)
196 3szr_A Interferon-induced GTP- 99.2 1.3E-10 4.3E-15 109.4 11.5 24 21-44 47-70 (608)
197 4fn5_A EF-G 1, elongation fact 99.1 1.2E-09 4.3E-14 104.7 16.4 117 20-152 14-152 (709)
198 1n0u_A EF-2, elongation factor 99.1 7.3E-11 2.5E-15 114.9 7.6 116 19-150 19-163 (842)
199 1jal_A YCHF protein; nucleotid 99.1 4.9E-10 1.7E-14 97.6 10.2 89 19-114 2-107 (363)
200 3h2y_A GTPase family protein; 99.0 1.5E-11 5.2E-16 108.5 -1.5 125 19-152 160-288 (368)
201 1tq4_A IIGP1, interferon-induc 99.0 5.8E-09 2E-13 92.7 13.6 115 19-150 69-188 (413)
202 3ec1_A YQEH GTPase; atnos1, at 99.0 1.4E-11 4.7E-16 108.9 -3.2 125 19-152 162-289 (369)
203 1yrb_A ATP(GTP)binding protein 99.0 1.2E-09 4E-14 92.3 7.6 130 69-210 109-257 (262)
204 2ohf_A Protein OLA1, GTP-bindi 98.9 2.7E-09 9.4E-14 93.8 7.1 92 17-114 20-127 (396)
205 1f5n_A Interferon-induced guan 98.9 6.9E-09 2.4E-13 96.1 9.9 107 17-130 36-147 (592)
206 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 4.1E-09 1.4E-13 93.0 7.9 91 17-114 18-126 (392)
207 2j37_W Signal recognition part 98.8 5.8E-08 2E-12 88.5 13.2 122 18-152 100-255 (504)
208 2wsm_A Hydrogenase expression/ 98.8 1.6E-08 5.3E-13 83.0 8.7 23 20-42 31-53 (221)
209 1puj_A YLQF, conserved hypothe 98.8 1.3E-08 4.5E-13 86.3 7.8 66 18-88 119-184 (282)
210 2dby_A GTP-binding protein; GD 98.8 1.1E-08 3.7E-13 89.7 7.4 88 20-114 2-110 (368)
211 2yhs_A FTSY, cell division pro 98.7 1.7E-07 5.9E-12 84.4 13.8 27 17-43 291-317 (503)
212 1rj9_A FTSY, signal recognitio 98.6 3E-07 1E-11 78.6 11.6 27 17-43 100-126 (304)
213 3tif_A Uncharacterized ABC tra 98.6 5.7E-08 2E-12 80.1 6.9 27 18-44 30-56 (235)
214 3e70_C DPA, signal recognition 98.6 1.2E-06 4.1E-11 75.7 15.2 27 17-43 127-153 (328)
215 3cnl_A YLQF, putative uncharac 98.6 5.4E-08 1.8E-12 81.5 5.2 64 20-88 100-164 (262)
216 3dm5_A SRP54, signal recogniti 98.5 2.3E-06 7.8E-11 76.4 15.4 123 18-152 99-254 (443)
217 2pcj_A ABC transporter, lipopr 98.5 4.5E-08 1.5E-12 80.1 3.6 27 18-44 29-55 (224)
218 1mv5_A LMRA, multidrug resista 98.5 3.5E-07 1.2E-11 75.8 8.8 133 18-163 27-184 (243)
219 1sgw_A Putative ABC transporte 98.5 5.4E-08 1.9E-12 78.7 3.7 27 18-44 34-60 (214)
220 3q5d_A Atlastin-1; G protein, 98.5 3.9E-07 1.3E-11 81.6 9.4 104 18-131 66-196 (447)
221 3b9q_A Chloroplast SRP recepto 98.5 2.5E-06 8.7E-11 72.8 13.8 27 17-43 98-124 (302)
222 4fid_A G protein alpha subunit 98.5 1.1E-06 3.8E-11 75.8 11.3 73 67-151 159-242 (340)
223 3nh6_A ATP-binding cassette SU 98.5 4.9E-08 1.7E-12 83.3 2.8 27 18-44 79-105 (306)
224 2hf9_A Probable hydrogenase ni 98.5 1.2E-06 4.1E-11 71.8 11.1 24 19-42 38-61 (226)
225 2og2_A Putative signal recogni 98.5 3.3E-06 1.1E-10 73.7 14.0 27 17-43 155-181 (359)
226 2nq2_C Hypothetical ABC transp 98.4 1.9E-07 6.4E-12 77.8 5.4 27 18-44 30-56 (253)
227 2v3c_C SRP54, signal recogniti 98.4 5.3E-07 1.8E-11 80.9 7.7 122 19-152 99-253 (432)
228 3tui_C Methionine import ATP-b 98.4 2.6E-07 8.7E-12 80.5 5.1 27 18-44 53-79 (366)
229 1oxx_K GLCV, glucose, ABC tran 98.4 2.5E-07 8.6E-12 80.7 5.0 27 18-44 30-56 (353)
230 3fvq_A Fe(3+) IONS import ATP- 98.4 1.9E-07 6.6E-12 81.2 3.8 27 18-44 29-55 (359)
231 3ohm_A Guanine nucleotide-bind 98.4 1.2E-05 4.1E-10 69.1 14.7 74 67-151 165-248 (327)
232 3rlf_A Maltose/maltodextrin im 98.4 1.7E-07 5.9E-12 82.1 3.3 27 18-44 28-54 (381)
233 1g29_1 MALK, maltose transport 98.3 4E-07 1.4E-11 79.9 4.9 27 18-44 28-54 (372)
234 3kl4_A SRP54, signal recogniti 98.3 6.6E-07 2.3E-11 79.9 6.3 125 18-152 96-253 (433)
235 2it1_A 362AA long hypothetical 98.3 2.9E-07 1E-11 80.3 3.6 27 18-44 28-54 (362)
236 1yqt_A RNAse L inhibitor; ATP- 98.3 2.2E-06 7.5E-11 79.4 9.0 35 18-56 311-345 (538)
237 1z47_A CYSA, putative ABC-tran 98.3 3E-07 1E-11 80.0 2.9 27 18-44 40-66 (355)
238 1t9h_A YLOQ, probable GTPase E 98.3 3.3E-07 1.1E-11 78.1 3.0 27 18-44 172-198 (307)
239 2yyz_A Sugar ABC transporter, 98.3 2.5E-07 8.6E-12 80.7 2.3 27 18-44 28-54 (359)
240 3b5x_A Lipid A export ATP-bind 98.2 2.2E-06 7.6E-11 80.5 8.3 35 18-56 368-402 (582)
241 3d31_A Sulfate/molybdate ABC t 98.2 3.7E-07 1.3E-11 79.3 2.9 27 18-44 25-51 (348)
242 4g1u_C Hemin import ATP-bindin 98.2 6E-07 2E-11 75.3 3.8 27 18-44 36-62 (266)
243 2pze_A Cystic fibrosis transme 98.2 5.8E-07 2E-11 73.7 3.6 35 18-56 33-67 (229)
244 2cbz_A Multidrug resistance-as 98.2 5.3E-07 1.8E-11 74.3 3.0 27 18-44 30-56 (237)
245 1vma_A Cell division protein F 98.2 4.3E-06 1.5E-10 71.4 8.5 27 17-43 102-128 (306)
246 3ozx_A RNAse L inhibitor; ATP 98.2 2.1E-06 7.2E-11 79.3 7.0 34 18-55 293-326 (538)
247 2olj_A Amino acid ABC transpor 98.2 5.9E-07 2E-11 75.1 2.9 27 18-44 49-75 (263)
248 1b0u_A Histidine permease; ABC 98.2 5.9E-07 2E-11 75.2 2.9 27 18-44 31-57 (262)
249 3gfo_A Cobalt import ATP-bindi 98.2 5.6E-07 1.9E-11 75.7 2.8 27 18-44 33-59 (275)
250 3bk7_A ABC transporter ATP-bin 98.2 2.4E-06 8.1E-11 80.1 7.1 35 18-56 381-415 (607)
251 1vpl_A ABC transporter, ATP-bi 98.2 6.7E-07 2.3E-11 74.5 2.9 27 18-44 40-66 (256)
252 1g6h_A High-affinity branched- 98.2 6.5E-07 2.2E-11 74.8 2.7 27 18-44 32-58 (257)
253 2rcn_A Probable GTPase ENGC; Y 98.2 7.9E-07 2.7E-11 77.3 3.3 26 19-44 215-240 (358)
254 1ji0_A ABC transporter; ATP bi 98.2 6.9E-07 2.4E-11 73.9 2.7 27 18-44 31-57 (240)
255 2yv5_A YJEQ protein; hydrolase 98.2 2.4E-06 8.1E-11 73.2 6.0 25 19-44 165-189 (302)
256 2ff7_A Alpha-hemolysin translo 98.1 8.6E-07 2.9E-11 73.6 2.7 27 18-44 34-60 (247)
257 2yz2_A Putative ABC transporte 98.1 9.5E-07 3.3E-11 74.2 2.9 27 18-44 32-58 (266)
258 2ixe_A Antigen peptide transpo 98.1 9.6E-07 3.3E-11 74.3 2.9 27 18-44 44-70 (271)
259 2onk_A Molybdate/tungstate ABC 98.1 9.7E-07 3.3E-11 72.8 2.8 25 20-44 25-49 (240)
260 2ihy_A ABC transporter, ATP-bi 98.1 1E-06 3.5E-11 74.4 3.0 27 18-44 46-72 (279)
261 3qf4_A ABC transporter, ATP-bi 98.1 1.1E-06 3.8E-11 82.5 3.4 27 18-44 368-394 (587)
262 2qi9_C Vitamin B12 import ATP- 98.1 1E-06 3.4E-11 73.1 2.8 27 18-44 25-51 (249)
263 2px0_A Flagellar biosynthesis 98.1 1.1E-05 3.6E-10 68.8 9.1 27 17-43 103-129 (296)
264 1j8m_F SRP54, signal recogniti 98.1 1.8E-05 6E-10 67.5 10.3 23 19-41 98-120 (297)
265 1u0l_A Probable GTPase ENGC; p 98.1 1.9E-06 6.6E-11 73.8 4.1 26 19-44 169-194 (301)
266 1htw_A HI0065; nucleotide-bind 98.1 1.6E-06 5.4E-11 66.5 3.1 26 18-43 32-57 (158)
267 2bbs_A Cystic fibrosis transme 98.1 1.2E-06 4E-11 74.4 2.7 27 18-44 63-89 (290)
268 1znw_A Guanylate kinase, GMP k 98.0 1.9E-06 6.6E-11 69.6 3.1 27 17-43 18-44 (207)
269 4f4c_A Multidrug resistance pr 98.0 4.6E-06 1.6E-10 85.4 6.5 35 18-56 443-477 (1321)
270 4a82_A Cystic fibrosis transme 98.0 9.6E-07 3.3E-11 82.8 1.4 27 18-44 366-392 (578)
271 1ye8_A Protein THEP1, hypothet 98.0 2E-06 6.9E-11 67.5 2.9 23 21-43 2-24 (178)
272 4ido_A Atlastin-1; GTPase, GTP 98.0 2.7E-05 9.4E-10 69.3 10.2 108 17-131 65-196 (457)
273 3b85_A Phosphate starvation-in 98.0 1.5E-06 5.1E-11 70.0 2.0 26 18-44 21-46 (208)
274 2zu0_C Probable ATP-dependent 98.0 2.9E-06 9.8E-11 71.3 3.7 25 18-42 45-69 (267)
275 4f4c_A Multidrug resistance pr 98.0 7.3E-06 2.5E-10 84.0 6.9 134 18-163 1104-1262(1321)
276 2d2e_A SUFC protein; ABC-ATPas 98.0 3.1E-06 1.1E-10 70.3 3.5 25 18-42 28-52 (250)
277 1zu4_A FTSY; GTPase, signal re 98.0 2.2E-05 7.5E-10 67.6 8.8 26 17-42 103-128 (320)
278 2ghi_A Transport protein; mult 98.0 3.4E-06 1.2E-10 70.5 3.6 27 18-44 45-71 (260)
279 2xxa_A Signal recognition part 98.0 5.7E-05 1.9E-09 67.8 11.4 124 17-152 98-255 (433)
280 1lvg_A Guanylate kinase, GMP k 98.0 2.9E-06 9.9E-11 68.0 2.6 25 19-43 4-28 (198)
281 1v43_A Sugar-binding transport 97.9 3.6E-06 1.2E-10 73.8 2.9 27 18-44 36-62 (372)
282 1s96_A Guanylate kinase, GMP k 97.9 4.9E-06 1.7E-10 67.6 3.2 28 17-44 14-41 (219)
283 1z6g_A Guanylate kinase; struc 97.9 4.3E-06 1.5E-10 68.1 2.8 26 18-43 22-47 (218)
284 3tr0_A Guanylate kinase, GMP k 97.9 5.4E-06 1.8E-10 66.8 3.3 26 18-43 6-31 (205)
285 3j16_B RLI1P; ribosome recycli 97.9 5.1E-05 1.7E-09 71.1 9.9 25 20-44 379-403 (608)
286 2pjz_A Hypothetical protein ST 97.9 6.5E-06 2.2E-10 68.8 3.5 25 19-43 30-54 (263)
287 3c8u_A Fructokinase; YP_612366 97.9 6.4E-06 2.2E-10 66.6 3.2 28 17-44 20-47 (208)
288 2ffh_A Protein (FFH); SRP54, s 97.9 2.4E-05 8.3E-10 69.7 7.0 25 18-42 97-121 (425)
289 3ozx_A RNAse L inhibitor; ATP 97.9 9.8E-06 3.3E-10 74.9 4.6 29 16-44 22-50 (538)
290 4gp7_A Metallophosphoesterase; 97.9 8.2E-06 2.8E-10 63.7 3.4 24 18-41 8-31 (171)
291 3a00_A Guanylate kinase, GMP k 97.9 5.8E-06 2E-10 65.5 2.6 25 20-44 2-26 (186)
292 1kgd_A CASK, peripheral plasma 97.8 7.9E-06 2.7E-10 64.3 3.2 26 18-43 4-29 (180)
293 1zp6_A Hypothetical protein AT 97.8 9.8E-06 3.4E-10 64.4 3.5 25 18-42 8-32 (191)
294 3asz_A Uridine kinase; cytidin 97.8 8.2E-06 2.8E-10 66.0 2.9 27 17-43 4-30 (211)
295 3jvv_A Twitching mobility prot 97.8 2.7E-05 9.1E-10 68.0 6.2 27 18-44 122-148 (356)
296 1ls1_A Signal recognition part 97.8 0.00019 6.5E-09 61.1 11.3 25 18-42 97-121 (295)
297 2i3b_A HCR-ntpase, human cance 97.8 8.5E-06 2.9E-10 64.5 2.7 25 20-44 2-26 (189)
298 2eyu_A Twitching motility prot 97.8 1.1E-05 3.6E-10 67.5 3.2 28 17-44 23-50 (261)
299 2v9p_A Replication protein E1; 97.8 1E-05 3.6E-10 68.8 3.2 26 18-43 125-150 (305)
300 3j16_B RLI1P; ribosome recycli 97.8 1.6E-05 5.4E-10 74.5 4.6 29 16-44 100-128 (608)
301 1yqt_A RNAse L inhibitor; ATP- 97.8 1.6E-05 5.3E-10 73.7 4.5 28 17-44 45-72 (538)
302 2pt7_A CAG-ALFA; ATPase, prote 97.7 1.4E-05 4.7E-10 69.3 3.2 35 19-57 171-205 (330)
303 2gza_A Type IV secretion syste 97.7 1.6E-05 5.6E-10 69.8 3.4 36 18-57 174-209 (361)
304 3aez_A Pantothenate kinase; tr 97.7 1.6E-05 5.5E-10 68.2 3.3 29 16-44 87-115 (312)
305 3bk7_A ABC transporter ATP-bin 97.7 2.3E-05 8E-10 73.4 4.5 28 17-44 115-142 (607)
306 3g5u_A MCG1178, multidrug resi 97.7 9.6E-06 3.3E-10 82.9 1.7 27 18-44 415-441 (1284)
307 3gd7_A Fusion complex of cysti 97.7 2.1E-05 7.2E-10 69.4 3.4 27 18-44 46-72 (390)
308 2jeo_A Uridine-cytidine kinase 97.7 2.2E-05 7.4E-10 65.2 3.3 25 18-42 24-48 (245)
309 3lnc_A Guanylate kinase, GMP k 97.7 1.5E-05 5.3E-10 65.4 2.2 26 18-43 26-52 (231)
310 3tau_A Guanylate kinase, GMP k 97.6 3.1E-05 1.1E-09 62.5 3.6 26 18-43 7-32 (208)
311 3ney_A 55 kDa erythrocyte memb 97.6 3.1E-05 1E-09 61.4 3.4 26 18-43 18-43 (197)
312 4eun_A Thermoresistant glucoki 97.6 2.9E-05 1E-09 62.2 3.2 26 17-42 27-52 (200)
313 3b60_A Lipid A export ATP-bind 97.6 2.2E-05 7.5E-10 73.7 2.7 27 18-44 368-394 (582)
314 3euj_A Chromosome partition pr 97.6 2.8E-05 9.6E-10 70.3 3.2 25 20-44 30-54 (483)
315 2yl4_A ATP-binding cassette SU 97.6 2.1E-05 7E-10 74.1 2.4 27 18-44 369-395 (595)
316 2bdt_A BH3686; alpha-beta prot 97.6 2.7E-05 9.3E-10 61.7 2.7 22 20-41 3-24 (189)
317 3qf4_B Uncharacterized ABC tra 97.6 2.4E-05 8.1E-10 73.7 2.6 27 18-44 380-406 (598)
318 3thx_A DNA mismatch repair pro 97.6 0.00037 1.2E-08 68.4 10.8 23 18-40 661-683 (934)
319 2j41_A Guanylate kinase; GMP, 97.6 3.8E-05 1.3E-09 61.8 3.4 26 18-43 5-30 (207)
320 2ehv_A Hypothetical protein PH 97.6 3.5E-05 1.2E-09 64.0 3.1 23 18-40 29-51 (251)
321 4a74_A DNA repair and recombin 97.5 3.3E-05 1.1E-09 63.3 2.8 27 18-44 24-50 (231)
322 2npi_A Protein CLP1; CLP1-PCF1 97.5 2.9E-05 1E-09 70.2 2.6 27 18-44 137-163 (460)
323 1p9r_A General secretion pathw 97.5 4.4E-05 1.5E-09 68.1 3.7 28 17-44 165-192 (418)
324 2oap_1 GSPE-2, type II secreti 97.5 4E-05 1.4E-09 70.3 3.4 34 19-56 260-293 (511)
325 2vp4_A Deoxynucleoside kinase; 97.5 5E-05 1.7E-09 62.3 3.7 27 16-42 17-43 (230)
326 1sq5_A Pantothenate kinase; P- 97.5 4.4E-05 1.5E-09 65.6 3.4 27 17-43 78-104 (308)
327 1cip_A Protein (guanine nucleo 97.5 0.00036 1.2E-08 60.8 8.9 77 62-150 187-273 (353)
328 2bbw_A Adenylate kinase 4, AK4 97.5 5.4E-05 1.9E-09 62.8 3.6 26 19-44 27-55 (246)
329 2iw3_A Elongation factor 3A; a 97.5 2.6E-05 8.9E-10 76.3 1.7 27 18-44 698-724 (986)
330 3kta_A Chromosome segregation 97.5 4.8E-05 1.6E-09 59.9 3.0 23 20-42 27-49 (182)
331 1knq_A Gluconate kinase; ALFA/ 97.5 6.6E-05 2.2E-09 58.7 3.7 26 17-42 6-31 (175)
332 1lw7_A Transcriptional regulat 97.5 4.2E-05 1.4E-09 67.4 2.7 26 19-44 170-195 (365)
333 1kag_A SKI, shikimate kinase I 97.5 5.1E-05 1.7E-09 59.1 2.8 24 20-43 5-28 (173)
334 3uie_A Adenylyl-sulfate kinase 97.5 6E-05 2.1E-09 60.3 3.2 27 17-43 23-49 (200)
335 3thx_B DNA mismatch repair pro 97.5 0.00038 1.3E-08 68.1 9.2 25 18-42 672-696 (918)
336 2obl_A ESCN; ATPase, hydrolase 97.4 5.3E-05 1.8E-09 66.0 2.9 28 17-44 69-96 (347)
337 1zcb_A G alpha I/13; GTP-bindi 97.4 0.001 3.4E-08 58.2 10.9 72 67-150 199-281 (362)
338 2ewv_A Twitching motility prot 97.4 6E-05 2.1E-09 66.4 3.1 28 17-44 134-161 (372)
339 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 8.9E-05 3E-09 56.2 3.4 22 19-40 23-44 (149)
340 2kjq_A DNAA-related protein; s 97.4 6.9E-05 2.4E-09 56.8 2.5 27 18-44 35-61 (149)
341 4e22_A Cytidylate kinase; P-lo 97.4 0.00011 3.8E-09 61.1 3.9 24 17-40 25-48 (252)
342 2f1r_A Molybdopterin-guanine d 97.4 3.9E-05 1.3E-09 59.6 1.0 25 20-44 3-27 (171)
343 1nij_A Hypothetical protein YJ 97.4 0.00012 4E-09 63.2 4.0 24 20-43 5-28 (318)
344 1qhl_A Protein (cell division 97.3 1.8E-05 6.3E-10 64.3 -1.6 25 20-44 28-52 (227)
345 3ec2_A DNA replication protein 97.3 9.3E-05 3.2E-09 58.1 2.5 26 19-44 38-63 (180)
346 3tqc_A Pantothenate kinase; bi 97.3 0.00015 5.2E-09 62.1 3.6 27 17-43 90-116 (321)
347 1rz3_A Hypothetical protein rb 97.3 0.00013 4.4E-09 58.4 3.0 27 17-43 20-46 (201)
348 2dpy_A FLII, flagellum-specifi 97.3 0.00011 3.8E-09 66.1 2.8 28 17-44 155-182 (438)
349 1qvr_A CLPB protein; coiled co 97.2 0.028 9.6E-07 55.3 19.7 24 20-43 192-215 (854)
350 2if2_A Dephospho-COA kinase; a 97.2 0.00013 4.5E-09 58.5 2.7 21 21-41 3-23 (204)
351 4b4t_L 26S protease subunit RP 97.2 0.0026 8.9E-08 56.8 11.0 24 20-43 216-239 (437)
352 2iw3_A Elongation factor 3A; a 97.2 0.00014 4.9E-09 71.2 3.1 24 18-41 460-483 (986)
353 1cke_A CK, MSSA, protein (cyti 97.2 0.00016 5.6E-09 59.0 3.0 23 20-42 6-28 (227)
354 1jjv_A Dephospho-COA kinase; P 97.2 0.00018 6.1E-09 57.8 3.2 22 20-41 3-24 (206)
355 4b4t_J 26S protease regulatory 97.2 0.0025 8.5E-08 56.1 10.5 25 20-44 183-207 (405)
356 1sxj_E Activator 1 40 kDa subu 97.2 0.00076 2.6E-08 59.1 7.3 22 21-42 38-59 (354)
357 2qt1_A Nicotinamide riboside k 97.2 0.00022 7.5E-09 57.3 3.5 25 19-43 21-45 (207)
358 2qor_A Guanylate kinase; phosp 97.2 0.0002 6.7E-09 57.5 3.1 26 18-43 11-36 (204)
359 3qf7_A RAD50; ABC-ATPase, ATPa 97.2 0.0002 6.9E-09 62.9 3.4 21 20-40 24-44 (365)
360 4b4t_I 26S protease regulatory 97.2 0.0029 9.9E-08 56.0 10.7 25 20-44 217-241 (437)
361 4aby_A DNA repair protein RECN 97.1 7E-05 2.4E-09 67.3 0.1 22 20-41 61-82 (415)
362 2o8b_B DNA mismatch repair pro 97.1 0.0015 5.1E-08 64.9 9.3 25 19-44 789-813 (1022)
363 3qks_A DNA double-strand break 97.1 0.00031 1.1E-08 56.2 3.4 21 20-40 24-44 (203)
364 3te6_A Regulatory protein SIR3 97.1 0.058 2E-06 46.0 17.6 27 17-43 43-69 (318)
365 2x8a_A Nuclear valosin-contain 97.1 0.00023 7.7E-09 60.0 2.6 22 22-43 47-68 (274)
366 4b4t_K 26S protease regulatory 97.1 0.0042 1.5E-07 55.3 10.8 24 20-43 207-230 (428)
367 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.00028 9.6E-09 57.7 3.1 25 19-43 23-47 (235)
368 3vaa_A Shikimate kinase, SK; s 97.0 0.00031 1.1E-08 56.1 3.2 25 18-42 24-48 (199)
369 1cr0_A DNA primase/helicase; R 97.0 0.00028 9.6E-09 60.2 3.0 27 18-44 34-60 (296)
370 3t61_A Gluconokinase; PSI-biol 97.0 0.00035 1.2E-08 55.9 3.1 23 20-42 19-41 (202)
371 1odf_A YGR205W, hypothetical 3 97.0 0.00043 1.5E-08 58.7 3.5 28 17-44 29-56 (290)
372 1np6_A Molybdopterin-guanine d 97.0 0.00037 1.3E-08 54.1 2.9 24 20-43 7-30 (174)
373 3g5u_A MCG1178, multidrug resi 97.0 0.00027 9.3E-09 72.3 2.6 27 18-44 1058-1084(1284)
374 1ex7_A Guanylate kinase; subst 97.0 0.00039 1.3E-08 54.5 2.9 22 21-42 3-24 (186)
375 3qkt_A DNA double-strand break 97.0 0.00043 1.5E-08 60.3 3.4 21 20-40 24-44 (339)
376 2pez_A Bifunctional 3'-phospho 97.0 0.00043 1.5E-08 54.2 3.2 26 18-43 4-29 (179)
377 1e69_A Chromosome segregation 96.9 0.00041 1.4E-08 60.0 2.9 21 20-40 25-45 (322)
378 1wb9_A DNA mismatch repair pro 96.9 0.00039 1.4E-08 67.2 3.1 27 17-43 605-631 (800)
379 2o5v_A DNA replication and rep 96.9 0.00046 1.6E-08 60.2 3.2 22 20-41 27-48 (359)
380 1azs_C GS-alpha; complex (lyas 96.9 0.0048 1.6E-07 54.5 9.6 72 67-150 215-297 (402)
381 4b4t_H 26S protease regulatory 96.9 0.0056 1.9E-07 54.7 10.0 25 20-44 244-268 (467)
382 1svm_A Large T antigen; AAA+ f 96.9 0.00052 1.8E-08 60.3 3.2 25 18-42 168-192 (377)
383 3cm0_A Adenylate kinase; ATP-b 96.9 0.00059 2E-08 53.7 3.2 23 19-41 4-26 (186)
384 1ixz_A ATP-dependent metallopr 96.8 0.00047 1.6E-08 57.4 2.7 22 22-43 52-73 (254)
385 2yvu_A Probable adenylyl-sulfa 96.8 0.00074 2.5E-08 53.2 3.7 26 18-43 12-37 (186)
386 1w1w_A Structural maintenance 96.8 0.00053 1.8E-08 61.8 3.1 25 19-43 26-50 (430)
387 3nwj_A ATSK2; P loop, shikimat 96.8 0.00051 1.7E-08 56.8 2.7 25 19-43 48-72 (250)
388 3kb2_A SPBC2 prophage-derived 96.8 0.00062 2.1E-08 52.8 3.1 22 21-42 3-24 (173)
389 3ux8_A Excinuclease ABC, A sub 96.8 0.00044 1.5E-08 66.1 2.4 23 18-40 347-369 (670)
390 3lw7_A Adenylate kinase relate 96.8 0.0007 2.4E-08 52.6 3.2 20 20-39 2-21 (179)
391 1n0w_A DNA repair protein RAD5 96.8 0.00067 2.3E-08 55.9 3.1 24 19-42 24-47 (243)
392 2cvh_A DNA repair and recombin 96.8 0.00073 2.5E-08 54.7 3.2 24 18-41 19-42 (220)
393 1ewq_A DNA mismatch repair pro 96.8 0.00059 2E-08 65.6 3.0 25 19-43 576-600 (765)
394 3iot_A Maltose-binding protein 96.8 0.0011 3.6E-08 60.3 4.5 13 120-132 187-199 (449)
395 4b4t_M 26S protease regulatory 96.8 0.0033 1.1E-07 56.1 7.5 24 20-43 216-239 (434)
396 1in4_A RUVB, holliday junction 96.7 0.00061 2.1E-08 59.2 2.6 24 20-43 52-75 (334)
397 1iy2_A ATP-dependent metallopr 96.7 0.00063 2.2E-08 57.4 2.7 22 22-43 76-97 (278)
398 4eaq_A DTMP kinase, thymidylat 96.7 0.0012 4E-08 53.9 4.2 27 17-43 24-50 (229)
399 3cr8_A Sulfate adenylyltranfer 96.7 0.00048 1.7E-08 63.7 1.9 27 18-44 368-394 (552)
400 1q3t_A Cytidylate kinase; nucl 96.7 0.00084 2.9E-08 55.1 3.2 25 18-42 15-39 (236)
401 1qhx_A CPT, protein (chloramph 96.7 0.00099 3.4E-08 51.9 3.5 23 20-42 4-26 (178)
402 1nlf_A Regulatory protein REPA 96.7 0.00074 2.5E-08 57.0 2.9 25 18-42 29-53 (279)
403 1ly1_A Polynucleotide kinase; 96.7 0.00099 3.4E-08 52.0 3.4 22 20-41 3-24 (181)
404 1kht_A Adenylate kinase; phosp 96.7 0.00097 3.3E-08 52.6 3.3 22 20-41 4-25 (192)
405 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.012 4E-07 48.9 10.1 23 20-42 40-62 (262)
406 1njg_A DNA polymerase III subu 96.7 0.0019 6.4E-08 52.9 5.2 24 20-43 46-69 (250)
407 1y63_A LMAJ004144AAA protein; 96.7 0.0012 4.3E-08 51.8 3.8 24 19-42 10-33 (184)
408 1aky_A Adenylate kinase; ATP:A 96.6 0.0011 3.8E-08 53.7 3.5 24 18-41 3-26 (220)
409 2jaq_A Deoxyguanosine kinase; 96.6 0.001 3.4E-08 53.2 3.2 22 21-42 2-23 (205)
410 1gvn_B Zeta; postsegregational 96.6 0.0013 4.3E-08 55.7 3.8 25 17-41 31-55 (287)
411 1tf7_A KAIC; homohexamer, hexa 96.6 0.00089 3.1E-08 62.0 2.9 26 18-43 38-65 (525)
412 3ux8_A Excinuclease ABC, A sub 96.6 0.0009 3.1E-08 63.9 2.9 19 18-36 43-61 (670)
413 2rhm_A Putative kinase; P-loop 96.6 0.0012 4.1E-08 52.2 3.2 23 19-41 5-27 (193)
414 3pxg_A Negative regulator of g 96.6 0.0079 2.7E-07 54.7 8.9 25 19-43 201-225 (468)
415 1via_A Shikimate kinase; struc 96.6 0.0011 3.7E-08 51.6 2.8 22 21-42 6-27 (175)
416 1ukz_A Uridylate kinase; trans 96.5 0.0018 6.2E-08 51.7 4.1 26 16-41 12-37 (203)
417 4dzz_A Plasmid partitioning pr 96.5 0.025 8.5E-07 44.9 10.8 69 68-150 75-143 (206)
418 2ze6_A Isopentenyl transferase 96.5 0.0012 4E-08 54.9 2.9 22 21-42 3-24 (253)
419 2v54_A DTMP kinase, thymidylat 96.5 0.0016 5.4E-08 52.0 3.6 24 19-42 4-27 (204)
420 1m7g_A Adenylylsulfate kinase; 96.5 0.0013 4.5E-08 52.9 3.1 26 18-43 24-49 (211)
421 3trf_A Shikimate kinase, SK; a 96.5 0.0014 4.9E-08 51.4 3.3 22 20-41 6-27 (185)
422 1fnn_A CDC6P, cell division co 96.5 0.016 5.4E-07 51.2 10.4 23 21-43 46-68 (389)
423 1uf9_A TT1252 protein; P-loop, 96.5 0.0015 5.2E-08 52.0 3.4 24 19-42 8-31 (203)
424 3auy_A DNA double-strand break 96.5 0.0013 4.5E-08 57.9 3.2 21 20-40 26-46 (371)
425 1vht_A Dephospho-COA kinase; s 96.5 0.0017 5.8E-08 52.5 3.6 23 19-41 4-26 (218)
426 1xjc_A MOBB protein homolog; s 96.5 0.0017 5.8E-08 49.9 3.3 24 20-43 5-28 (169)
427 2xtz_A Guanine nucleotide-bind 96.5 0.015 5.1E-07 50.6 9.7 69 69-150 183-263 (354)
428 1pzn_A RAD51, DNA repair and r 96.5 0.0012 4.2E-08 57.5 2.8 26 18-43 130-155 (349)
429 3iij_A Coilin-interacting nucl 96.5 0.0015 5.3E-08 51.0 3.1 22 19-40 11-32 (180)
430 2plr_A DTMP kinase, probable t 96.5 0.0017 5.9E-08 52.1 3.4 24 19-42 4-27 (213)
431 1nks_A Adenylate kinase; therm 96.5 0.0015 5E-08 51.6 2.9 22 21-42 3-24 (194)
432 1tev_A UMP-CMP kinase; ploop, 96.5 0.0017 5.7E-08 51.4 3.3 22 20-41 4-25 (196)
433 2wwf_A Thymidilate kinase, put 96.5 0.0019 6.5E-08 51.9 3.6 25 18-42 9-33 (212)
434 2cdn_A Adenylate kinase; phosp 96.4 0.0021 7.2E-08 51.2 3.9 25 17-41 18-42 (201)
435 3h4m_A Proteasome-activating n 96.4 0.013 4.5E-07 49.3 8.9 23 20-42 52-74 (285)
436 3fb4_A Adenylate kinase; psych 96.4 0.0017 5.7E-08 52.4 3.1 21 21-41 2-22 (216)
437 2p5t_B PEZT; postsegregational 96.4 0.0015 5.1E-08 54.3 2.8 26 17-42 30-55 (253)
438 2c95_A Adenylate kinase 1; tra 96.4 0.0018 6.2E-08 51.3 3.2 23 19-41 9-31 (196)
439 1ak2_A Adenylate kinase isoenz 96.4 0.0021 7.2E-08 52.6 3.6 32 11-42 8-39 (233)
440 3r20_A Cytidylate kinase; stru 96.4 0.0019 6.6E-08 52.5 3.3 24 19-42 9-32 (233)
441 2chg_A Replication factor C sm 96.4 0.037 1.2E-06 44.3 11.0 22 21-42 40-61 (226)
442 3dl0_A Adenylate kinase; phosp 96.4 0.0019 6.4E-08 52.2 3.1 21 21-41 2-22 (216)
443 1gtv_A TMK, thymidylate kinase 96.4 0.00083 2.8E-08 54.1 1.0 22 21-42 2-23 (214)
444 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.033 1.1E-06 47.9 10.7 25 19-43 45-69 (322)
445 1nn5_A Similar to deoxythymidy 96.3 0.0024 8.1E-08 51.4 3.3 24 19-42 9-32 (215)
446 2pt5_A Shikimate kinase, SK; a 96.3 0.0024 8.2E-08 49.2 3.2 21 21-41 2-22 (168)
447 1qf9_A UMP/CMP kinase, protein 96.2 0.003 1E-07 49.8 3.6 22 20-41 7-28 (194)
448 1zd8_A GTP:AMP phosphotransfer 96.2 0.0024 8.1E-08 52.0 3.1 22 20-41 8-29 (227)
449 3tlx_A Adenylate kinase 2; str 96.2 0.0031 1.1E-07 51.9 3.7 24 18-41 28-51 (243)
450 2bwj_A Adenylate kinase 5; pho 96.2 0.0026 8.8E-08 50.5 3.1 22 20-41 13-34 (199)
451 1zak_A Adenylate kinase; ATP:A 96.2 0.0025 8.4E-08 51.7 3.0 23 20-42 6-28 (222)
452 2vli_A Antibiotic resistance p 96.2 0.0022 7.5E-08 50.1 2.5 22 20-41 6-27 (183)
453 3h2y_A GTPase family protein; 96.2 0.01 3.6E-07 52.0 6.9 97 92-208 58-158 (368)
454 1e6c_A Shikimate kinase; phosp 96.1 0.0026 9E-08 49.2 2.8 22 20-41 3-24 (173)
455 1lv7_A FTSH; alpha/beta domain 96.1 0.0023 8E-08 53.2 2.7 24 20-43 46-69 (257)
456 2z0h_A DTMP kinase, thymidylat 96.1 0.0029 1E-07 50.1 3.1 22 21-42 2-23 (197)
457 2iyv_A Shikimate kinase, SK; t 96.1 0.0026 9E-08 49.8 2.8 22 20-41 3-24 (184)
458 1e4v_A Adenylate kinase; trans 96.1 0.0028 9.4E-08 51.1 2.9 21 21-41 2-22 (214)
459 2pbr_A DTMP kinase, thymidylat 96.1 0.0031 1.1E-07 49.8 3.1 22 21-42 2-23 (195)
460 2xb4_A Adenylate kinase; ATP-b 96.1 0.0033 1.1E-07 51.0 3.2 21 21-41 2-22 (223)
461 1jr3_A DNA polymerase III subu 96.0 0.0089 3E-07 52.5 6.0 24 20-43 39-62 (373)
462 1tf7_A KAIC; homohexamer, hexa 96.0 0.0029 1E-07 58.5 2.9 27 18-44 280-306 (525)
463 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.004 1.4E-07 51.9 3.4 23 20-42 5-27 (260)
464 1d2n_A N-ethylmaleimide-sensit 96.0 0.014 4.8E-07 48.8 6.8 24 19-42 64-87 (272)
465 2grj_A Dephospho-COA kinase; T 96.0 0.0039 1.3E-07 49.2 3.1 23 19-41 12-34 (192)
466 1zuh_A Shikimate kinase; alpha 96.0 0.004 1.4E-07 47.9 3.2 22 20-41 8-29 (168)
467 3cf2_A TER ATPase, transitiona 96.0 0.021 7.1E-07 55.1 8.6 24 20-43 239-262 (806)
468 3be4_A Adenylate kinase; malar 95.9 0.0038 1.3E-07 50.4 2.9 22 20-41 6-27 (217)
469 1r6b_X CLPA protein; AAA+, N-t 95.9 0.015 5E-07 56.5 7.4 26 18-43 206-231 (758)
470 1a7j_A Phosphoribulokinase; tr 95.9 0.0029 1E-07 53.6 2.1 24 18-41 4-27 (290)
471 3ake_A Cytidylate kinase; CMP 95.9 0.0039 1.3E-07 49.8 2.8 22 21-42 4-25 (208)
472 2qmh_A HPR kinase/phosphorylas 95.9 0.0054 1.8E-07 48.2 3.4 24 19-42 34-57 (205)
473 3sr0_A Adenylate kinase; phosp 95.9 0.0047 1.6E-07 49.3 3.1 22 21-42 2-23 (206)
474 1uj2_A Uridine-cytidine kinase 95.9 0.005 1.7E-07 51.0 3.4 23 19-41 22-44 (252)
475 3vfd_A Spastin; ATPase, microt 95.8 0.033 1.1E-06 49.3 8.8 24 19-42 148-171 (389)
476 1jbk_A CLPB protein; beta barr 95.8 0.0059 2E-07 47.8 3.5 25 19-43 43-67 (195)
477 2ygr_A Uvrabc system protein A 95.8 0.0034 1.2E-07 61.5 2.4 22 19-40 668-689 (993)
478 2f6r_A COA synthase, bifunctio 95.8 0.0058 2E-07 51.5 3.5 22 19-40 75-96 (281)
479 2dr3_A UPF0273 protein PH0284; 95.8 0.0054 1.9E-07 50.4 3.2 22 19-40 23-44 (247)
480 3umf_A Adenylate kinase; rossm 95.7 0.0066 2.3E-07 48.8 3.5 23 20-42 30-52 (217)
481 1u0l_A Probable GTPase ENGC; p 95.7 0.033 1.1E-06 47.4 7.9 87 99-205 80-168 (301)
482 3crm_A TRNA delta(2)-isopenten 95.7 0.0071 2.4E-07 51.6 3.6 23 20-42 6-28 (323)
483 2vf7_A UVRA2, excinuclease ABC 95.7 0.0024 8.2E-08 61.9 0.7 23 19-41 523-546 (842)
484 2w58_A DNAI, primosome compone 95.7 0.0067 2.3E-07 48.2 3.3 24 20-43 55-78 (202)
485 3cf0_A Transitional endoplasmi 95.7 0.0062 2.1E-07 51.9 3.2 25 19-43 49-73 (301)
486 3bos_A Putative DNA replicatio 95.6 0.0068 2.3E-07 49.5 3.3 26 18-43 51-76 (242)
487 4ad8_A DNA repair protein RECN 95.6 0.0022 7.4E-08 59.3 0.3 21 20-40 61-81 (517)
488 2ga8_A Hypothetical 39.9 kDa p 95.6 0.007 2.4E-07 52.3 3.4 25 19-43 24-48 (359)
489 3a8t_A Adenylate isopentenyltr 95.6 0.008 2.7E-07 51.6 3.7 24 20-43 41-64 (339)
490 3m6a_A ATP-dependent protease 95.6 0.0058 2E-07 56.7 3.1 26 18-43 107-132 (543)
491 3lda_A DNA repair protein RAD5 95.6 0.0064 2.2E-07 53.8 3.1 22 19-40 178-199 (400)
492 3exa_A TRNA delta(2)-isopenten 95.6 0.0077 2.6E-07 51.0 3.4 23 20-42 4-26 (322)
493 3l82_B F-box only protein 4; T 95.6 0.017 5.7E-07 45.8 5.0 103 93-208 115-221 (227)
494 2yv5_A YJEQ protein; hydrolase 95.5 0.052 1.8E-06 46.1 8.6 48 100-152 76-125 (302)
495 2r6f_A Excinuclease ABC subuni 95.5 0.0036 1.2E-07 61.1 1.4 22 19-40 650-671 (972)
496 4ag6_A VIRB4 ATPase, type IV s 95.5 0.0059 2E-07 54.2 2.6 26 18-43 34-59 (392)
497 3d3q_A TRNA delta(2)-isopenten 95.5 0.0076 2.6E-07 51.8 3.1 23 20-42 8-30 (340)
498 1ltq_A Polynucleotide kinase; 95.5 0.0077 2.6E-07 51.3 3.2 22 20-41 3-24 (301)
499 3b9p_A CG5977-PA, isoform A; A 95.5 0.0079 2.7E-07 51.1 3.2 24 19-42 54-77 (297)
500 2p65_A Hypothetical protein PF 95.5 0.007 2.4E-07 47.1 2.7 24 17-40 41-64 (187)
No 1
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=194.46 Aligned_cols=205 Identities=36% Similarity=0.661 Sum_probs=142.8
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
+.....+|+|||.+|+|||||+|+|+|...+.......++|..+....+.+ ++..++|+||||+.+......++.+.+.
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHH
Confidence 334568999999999999999999999877544333334565666666666 7889999999999987766777778888
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
+.+...+.++|++++|+|++ +++..+...+..+...++.....++++|+||+|.... ..+++++.. ..+.+..++.
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~l~~ 179 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQDLMD 179 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHHHHH
Confidence 88888888999999999998 7888888888888887776555689999999999876 667777764 3456888999
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCHHHHHhHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGAT 225 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 225 (363)
.|+.+++.|+... .++....++.+|++.+..++..+++.+|...++...+
T Consensus 180 ~~~~~~~~~~~~~-~~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e 229 (239)
T 3lxx_A 180 IFGDRYCALNNKA-TGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAE 229 (239)
T ss_dssp HHSSSEEECCTTC-CHHHHHHHHHHHHHHHHHHHHHCTTSCC---------
T ss_pred HcCCEEEEEECCC-CccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence 9999999988764 2345567999999999999999888888888766544
No 2
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.95 E-value=3.7e-26 Score=191.66 Aligned_cols=207 Identities=32% Similarity=0.562 Sum_probs=155.3
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCCh-HHHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFVGKEIV 94 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~ 94 (363)
+.+..+|+|||.+|+|||||+|+|+|...+.......++|..+....+.+ ++..++|+||||+.+..... .+....+.
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 35668999999999999999999999887654443334566666666666 78899999999998654322 33445566
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccc-cceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF-DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
+++.....++|++++|+|++ +++..+...++.+...++.... .++++++||+|+.. ..+++++.......+..++
T Consensus 97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~---~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG---GSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCC-CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC---CCHHHHHhhcccHHHHHHH
Confidence 66666668999999999998 7999999999999998876432 37888899999854 3466666542335688899
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCHHHHHhHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELR 228 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 228 (363)
..|+.++++|++... ++..+.++.+|++.|..++..+++.+|..+++...+...
T Consensus 173 ~~~g~~~~~~~~~~~-~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~~~~~~~~ 226 (247)
T 3lxw_A 173 AECGGRVCAFDNRAT-GREQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQVLR 226 (247)
T ss_dssp HHTTTCEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHGG
T ss_pred HHcCCeEEEEeCCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Confidence 999999999987643 445678999999999999999999999999887665443
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.93 E-value=4.3e-24 Score=181.27 Aligned_cols=201 Identities=30% Similarity=0.576 Sum_probs=150.3
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.....+|+|+|.+|||||||+|.|+|...+.......++|.......+.+ ++..+.|+||||+.+.........+.+.+
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 34568999999999999999999998876554333333455555555556 78899999999998765555555566677
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEe-CCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n-~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.+..++.++|++++|+|++ +++..+...+..+...++.....+.++|+| |+|+... .+..++.......+..++.
T Consensus 98 ~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG---SLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC---CHHHHHHHCCCHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc---cHHHHHHhcchHHHHHHHH
Confidence 7666778999999999998 688888888888888877654457777777 9998743 3555554323334666788
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHcCCCCCCHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKR 222 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 222 (363)
.++.++..|+. ...|+..+.++.++++.|...+....+.+|..+.+.
T Consensus 174 ~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~ 220 (260)
T 2xtp_A 174 ACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYS 220 (260)
T ss_dssp HTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHH
T ss_pred HhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHH
Confidence 88888766665 678889999999999999999988766777766443
No 4
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.81 E-value=1.5e-19 Score=156.29 Aligned_cols=175 Identities=16% Similarity=0.200 Sum_probs=117.2
Q ss_pred CCCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHH
Q 017924 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKE 92 (363)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~ 92 (363)
+++.+.+.|+|+|.+|||||||+|.|+|..... .+....++...+....... +..++|+||||+.+.. ....+.+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i--~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~-~~~~l~~~ 81 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI--ISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK-KSDVLGHS 81 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC--CCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC-TTCHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccc--cCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc-cchhHHHH
Confidence 345566899999999999999999999987521 2233333333333332325 7899999999998754 12345566
Q ss_pred HHHHHhccCCCccEEEEEeecCCCCCHHHHHH-HHHHHHHhccccccceEEEEeCCCCC-CcchhhHHHHhccCCCchHH
Q 017924 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDL-EDHEKTLEDFLGHECPKPLK 170 (363)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~i~v~n~~D~~-~~~~~~l~~~~~~~~~~~~~ 170 (363)
+......++..+|++++|+|+++..+..+... +..+.. . ..|+++|+||+|+. .. ..+...+..
T Consensus 82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-~----~~pvilV~NK~Dl~~~~--~~~~~~~~~------- 147 (308)
T 3iev_A 82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-L----NKPVIVVINKIDKIGPA--KNVLPLIDE------- 147 (308)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-G----CCCEEEEEECGGGSSSG--GGGHHHHHH-------
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-c----CCCEEEEEECccCCCCH--HHHHHHHHH-------
Confidence 66666666678899999999987777777665 444443 1 23899999999987 44 333333333
Q ss_pred HHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+...++.. ......|+..+.++.+|++.+...+..
T Consensus 148 -l~~~~~~~----~~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 148 -IHKKHPEL----TEIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp -HHHHCTTC----CCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred -HHHhccCC----CeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 22333211 112356888899999999999888754
No 5
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.81 E-value=7.5e-19 Score=151.03 Aligned_cols=165 Identities=18% Similarity=0.184 Sum_probs=112.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.++|+|||.+|+|||||+|+|+|..... .+....|+...+......++..+.|+||||+.+.. ..+.+.+.....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~i--vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~ 81 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAP--ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM---DALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSC--CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC---SHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceee--ecCCCCceeEEEEEEEEeCCcEEEEecCccccchh---hHHHHHHHHHHH
Confidence 4789999999999999999999887521 22233333333333322367889999999998742 344555666666
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhh-HHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~ 177 (363)
.++..+|++++|+|+++.++..+...++.+...+. . .|+++|+||+|+... .. +.+.+.. + +.
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~-~--~p~ilV~NK~Dl~~~--~~~~~~~~~~--------~---~~ 145 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVG-K--VPILLVGNKLDAAKY--PEEAMKAYHE--------L---LP 145 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT-T--SCEEEEEECGGGCSS--HHHHHHHHHH--------T---ST
T ss_pred HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC-C--CCEEEEEECcccCCc--hHHHHHHHHH--------h---cC
Confidence 67788999999999987788777665555554321 1 389999999999765 33 3333322 1 11
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.. .....|+..+.++.+|++.+...+.
T Consensus 146 ~~-----~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 146 EA-----EPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp TS-----EEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred cC-----cEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 11 1235688889999999998877654
No 6
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.79 E-value=5.8e-18 Score=140.10 Aligned_cols=176 Identities=14% Similarity=0.159 Sum_probs=111.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccccc-ccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~ 93 (363)
....+|+|+|..|+|||||+|.|+|...+ ..... .+.|............+..+.|+||||+.+...... +....+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKT-PGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCC-CCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCC-CCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 45689999999999999999999988621 11121 223433344444322567899999999876533322 111223
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
..........+|++++|+|+++.++..+..++..+.. .+ .++++|+||+|+... ..+...+.. +...+
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-~~----~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~l 173 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-TG----KPIHSLLTKCDKLTR--QESINALRA-----TQKSL 173 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-GC----CCEEEEEECGGGSCH--HHHHHHHHH-----HHHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-cC----CCEEEEEeccccCCh--hhHHHHHHH-----HHHHH
Confidence 3233333456899999999987788777776666554 12 389999999999865 444444433 33333
Q ss_pred Hhc-----CCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 174 QLC-----DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 174 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+ .....+ ...|++.+.++.++++.|...+.
T Consensus 174 ~~~~~~~~~~~~~~----~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 174 DAYRDAGYAGKLTV----QLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp HHHHHHTCCSCEEE----EEEBTTTTBSHHHHHHHHHHHHC
T ss_pred HhhhhcccCCCCeE----EEeecCCCcCHHHHHHHHHHhcC
Confidence 332 111111 25678889999999999887764
No 7
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.76 E-value=8.7e-17 Score=130.06 Aligned_cols=170 Identities=17% Similarity=0.249 Sum_probs=101.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCC-CCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~ 93 (363)
....+|+|+|..|+|||||+|.|++.... ..... ...|...... .. +..+.++||||+.+...... +....+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~t~~~~~~--~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNL-ARTSSKPGKTQTLNFY--II--NDELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEE--EE--TTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cccCCCCCceeeEEEE--EE--CCcEEEEECCCCCccccCHHHHHHHHHH
Confidence 34589999999999999999999987521 11111 1122222222 22 34688999999877544322 111222
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
..........+|++++|+|+++..+..+...+.++.. .+ .|+++|+||+|+... ..+...... +...+
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~----~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~~ 163 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-YG----IPVIVIATKADKIPK--GKWDKHAKV-----VRQTL 163 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSCG--GGHHHHHHH-----HHHHH
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECcccCCh--HHHHHHHHH-----HHHHH
Confidence 2222333345699999999987777777666665544 12 289999999999866 444433333 33323
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.......+ ...|+..+.++.++++.|.+.+
T Consensus 164 ~~~~~~~~-----~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 164 NIDPEDEL-----ILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp TCCTTSEE-----EECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCCCce-----EEEEccCCCCHHHHHHHHHHHh
Confidence 22111122 2467778899999999887654
No 8
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.75 E-value=4.3e-17 Score=137.90 Aligned_cols=142 Identities=25% Similarity=0.335 Sum_probs=102.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|+|..|+|||||+|+|+|......... .+.|.......+.+ ++..++|+||||+.+.........+.+.+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~-~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPF-QAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSS-CC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCC-CCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 458999999999999999999998765222222 22344444445555 7889999999999876544445555555554
Q ss_pred hccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc
Q 017924 98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
...++|++++|++++ .+++..+..+++.+...++.....++++|+||+|+...+...+++++..
T Consensus 113 --~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~ 177 (262)
T 3def_A 113 --VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK 177 (262)
T ss_dssp --TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred --hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence 234789999998876 3577788889999999888776679999999999864433556666543
No 9
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.75 E-value=4.6e-17 Score=138.43 Aligned_cols=142 Identities=24% Similarity=0.338 Sum_probs=99.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|+|.+|+|||||+|+|+|.......... +.|.......... .+..++|+||||+.+.........+.+.+++
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~-~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQ-SEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSS-CCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCC-CcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 4579999999999999999999987753222222 2233333333444 6788999999999775433334444444432
Q ss_pred hccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc
Q 017924 98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
...++|+++||++++ .+++..+..++..+...++...+.++++|+||+|+...+...+++++..
T Consensus 116 --~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~ 180 (270)
T 1h65_A 116 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK 180 (270)
T ss_dssp --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH
T ss_pred --hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH
Confidence 245789999998876 3677778888888888887665569999999999876533456666543
No 10
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.75 E-value=1.4e-16 Score=128.72 Aligned_cols=171 Identities=15% Similarity=0.174 Sum_probs=109.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~~ 94 (363)
....+|+|+|..|+|||||+|.|++..........+ .+..... .. .+..+.++||||+........ .....+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~t~~~~~--~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPG-KTRSINF--YL--VNSKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEE--EE--ETTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCC-CccCeEE--EE--ECCcEEEEECCCCccccCChhhHHHHHHHH
Confidence 345799999999999999999999876321212221 2222222 11 244677999999776433221 1222333
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.........++++++|+|.+...+..+...+.++... + .|+++|+||+|+... ..+...... +.....
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-~----~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~~~ 163 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-N----IPFTIVLTKMDKVKM--SERAKKLEE-----HRKVFS 163 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-T----CCEEEEEECGGGSCG--GGHHHHHHH-----HHHHHH
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCh--HHHHHHHHH-----HHHHHh
Confidence 3333444577999999998867777776666666553 2 289999999999865 445544444 444554
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+...+ ...|+..+.++.++++.+.+.+.
T Consensus 164 ~~~~~~~-----~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 164 KYGEYTI-----IPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp SSCCSCE-----EECCTTTCTTHHHHHHHHHHHHC
T ss_pred hcCCCce-----EEEecCCCCCHHHHHHHHHHHhh
Confidence 4332222 24678888999999998887653
No 11
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.73 E-value=3.8e-17 Score=140.68 Aligned_cols=166 Identities=16% Similarity=0.204 Sum_probs=106.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEeeCCcEEEEEeCCCCC-CCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQVVNVIDTPGLF-DLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~DtpG~~-~~~~~~~~~~~~~~~ 95 (363)
...+|+|||++|||||||+|+|+|..... .+....++..... .+.+ ++..++++||||+. . ....+.+.+..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i--~s~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~---~~~~l~~~~~~ 80 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHME---EKRAINRLMNK 80 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEE--CCCCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHH---HHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccc--cCCCCCcceeeEEEEEEE-CCeeEEEEECcCCCcc---chhhHHHHHHH
Confidence 34699999999999999999999986522 2222223332222 2333 67889999999976 2 11222233333
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...+|++++|+|+++ ++.++...++.+.. ...|+++++||+|.... ...+.+.+.. +...
T Consensus 81 ~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~~-~~~~~~~l~~--------l~~~ 145 (301)
T 1ega_A 81 AASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQE-KADLLPHLQF--------LASQ 145 (301)
T ss_dssp CTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCCC-HHHHHHHHHH--------HHTT
T ss_pred HHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCcc-HHHHHHHHHH--------HHHh
Confidence 34556678999999999985 88887755554432 12389999999998862 1333333322 3333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
++...+ ...|+..+.++.+|++.+...+.
T Consensus 146 ~~~~~~-----i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 146 MNFLDI-----VPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp SCCSEE-----EECCTTTTTTHHHHHHHHHTTCC
T ss_pred cCcCce-----EEEECCCCCCHHHHHHHHHHhCC
Confidence 332111 25677888999999998877654
No 12
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.71 E-value=1.7e-16 Score=135.16 Aligned_cols=171 Identities=19% Similarity=0.277 Sum_probs=94.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccC----CCCCceeeEeEEEEee-CC--cEEEEEeCCCCCCCCCChH---H
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG----SSGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAGSE---F 88 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~----~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~---~ 88 (363)
..+|+|||.+|+|||||+|+|++...+..... ....|+.......... ++ ..++++||||+++...... .
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 47999999999999999999998887554320 0012222222222221 33 3789999999976533221 1
Q ss_pred HH----HHHHHHHh---------ccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcch
Q 017924 89 VG----KEIVKCLG---------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE 154 (363)
Q Consensus 89 ~~----~~~~~~~~---------~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~ 154 (363)
+. .++..++. ....++|+++++++.+ +.+...+...++.+.. . .|+++|+||+|....
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~--~pvi~V~nK~D~~~~-- 159 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----K--VNIIPLIAKADTLTP-- 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----T--SCEEEEESSGGGSCH--
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----c--CCEEEEEeccCCCCH--
Confidence 11 11122221 1234578999988665 4677777776666544 2 389999999999866
Q ss_pred hhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 155 KTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 155 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+..+... +...+...+..++.+ ++..+.++.++.+.|...+
T Consensus 160 ~e~~~~~~~-----i~~~l~~~~i~v~~~------sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 160 EECQQFKKQ-----IMKEIQEHKIKIYEF------PETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHH-----HHHHHHHTTCCCCCC-----------------CHHHHHTC
T ss_pred HHHHHHHHH-----HHHHHHHcCCeEEcC------CCCCChhHHHHHHHHhcCC
Confidence 556555555 555555555554433 4556678888877776654
No 13
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.70 E-value=2.9e-16 Score=124.97 Aligned_cols=166 Identities=16% Similarity=0.205 Sum_probs=101.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|..|+|||||++.|++..... ....+.+.......+.+ ++..+.++||||...... .
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~-----------~ 71 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE--QEAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTT-----------M 71 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSC--SSCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSC-----------S
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcccc--CCCCceeEeeeEEEEEe-CCceEEEEECCCCHHHHH-----------H
Confidence 345799999999999999999999765421 11122232333333444 677889999999765321 1
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.......+|++++|+|+++.........+..+. ... .|+++|+||+|+.......+...+.. ...+...+
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~---~~~--~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~ 141 (178)
T 2lkc_A 72 RARGAQVTDIVILVVAADDGVMPQTVEAINHAK---AAN--VPIIVAINKMDKPEANPDRVMQELME-----YNLVPEEW 141 (178)
T ss_dssp CCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHG---GGS--CCEEEEEETTTSSCSCHHHHHHHHTT-----TTCCBTTT
T ss_pred HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHH---hCC--CCEEEEEECccCCcCCHHHHHHHHHh-----cCcChhHc
Confidence 224456789999999988555555555444332 222 38999999999875421222222222 11011111
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+....+ ...|++.+.++.++++.|...+..
T Consensus 142 ~~~~~~----~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 142 GGDTIF----CKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp TSSEEE----EECCSSSSHHHHHHHHHHHHHHHH
T ss_pred CCcccE----EEEecCCCCCHHHHHHHHHHhhhh
Confidence 111111 256888899999999988877654
No 14
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.69 E-value=7e-17 Score=127.80 Aligned_cols=161 Identities=20% Similarity=0.179 Sum_probs=97.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHH-HHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK-EIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~-~~~~~ 96 (363)
++.+|+|+|.+|+|||||+|.|+|.......... +.|.......+.+ ++..+.++||||+..... .+.. .+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~-~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~---~~~~~~~~~- 76 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIA-GTTRDVLREHIHI-DGMPLHIIDTAGLREASD---EVERIGIER- 76 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSST-TCCCSCEEEEEEE-TTEEEEEEECCCCSCCSS---HHHHHHHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCC-CceeceeeEEEEE-CCeEEEEEECCCcccchh---HHHHHHHHH-
Confidence 4579999999999999999999987531111111 1222222333444 677789999999865321 1111 1111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
....+..+|++++|+|+++..+.....++..+....... .|+++|+||+|+... .. ++...
T Consensus 77 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~~~--~~--~~~~~------------- 137 (172)
T 2gj8_A 77 AWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITGE--TL--GMSEV------------- 137 (172)
T ss_dssp HHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHCC--CC--EEEEE-------------
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccC--CCEEEEEECccCCcc--hh--hhhhc-------------
Confidence 122345789999999998555544555555555543222 389999999997432 00 00000
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.... ....|++++.++.++++.|.+.+
T Consensus 138 ~~~~-----~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 138 NGHA-----LIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp TTEE-----EEECCTTTCTTHHHHHHHHHHHC
T ss_pred cCCc-----eEEEeCCCCCCHHHHHHHHHHHh
Confidence 1111 12578888999999999887654
No 15
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.68 E-value=2.2e-15 Score=122.11 Aligned_cols=168 Identities=13% Similarity=0.054 Sum_probs=99.6
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
+.....+|+|+|..|+|||||++.|++...... ....|+......+.. .+..+.++||||... +.
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~---~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~ 77 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK---HITATVGYNVETFEK-GRVAFTVFDMGGAKK-----------FR 77 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC-------CCCCCSSEEEEEEEE-TTEEEEEEEECCSGG-----------GG
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc---ccccccceeEEEEEe-CCEEEEEEECCCCHh-----------HH
Confidence 345567999999999999999999997764111 111222233333333 678899999999653 22
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccc------cccceEEEEeCCCCCCcchhhHHHHhccCCCc
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKN------VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPK 167 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~------~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~ 167 (363)
......+..+|++++|+|+++..+-... .++..+....... ...++++|+||+|+... ...+++...
T Consensus 78 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~---- 151 (199)
T 4bas_A 78 GLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVEI---- 151 (199)
T ss_dssp GGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHHH----
T ss_pred HHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHHH----
Confidence 2333456789999999999844332222 2333332211100 12389999999999865 333333332
Q ss_pred hHH--HHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 168 PLK--EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 168 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+. .+....+..+ ..+|++.+.++.++++.|...+..
T Consensus 152 -~~~~~~~~~~~~~~------~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 152 -LDLTTLMGDHPFVI------FASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp -HTHHHHHTTSCEEE------EECBTTTTBTHHHHHHHHHHHHHH
T ss_pred -hcchhhccCCeeEE------EEeeCCCccCHHHHHHHHHHHHHH
Confidence 21 1112222222 256788889999999988876654
No 16
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.68 E-value=2.1e-16 Score=143.46 Aligned_cols=175 Identities=18% Similarity=0.201 Sum_probs=105.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~~~ 95 (363)
...+|+|+|.+|+|||||+|.|+|.......... +.|.+.....+.+ ++..+.++||||+........ +....+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~-gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~- 250 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVA-GTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLR- 250 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHH-
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCC-CceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHH-
Confidence 4479999999999999999999987642221222 2233333334444 677899999999854321100 1011111
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...++..+|++++|+|+++..+..+..++..+.. .+ .++++|+||+|+........+++... +...+..
T Consensus 251 -~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~-~~----~~iiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~l~~ 319 (436)
T 2hjg_A 251 -ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-AG----KAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQF 319 (436)
T ss_dssp -HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CEEEEEEECGGGSCCCTTHHHHHHHH-----HHHHCGG
T ss_pred -HHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH-cC----CcEEEEEECccCCCcchHHHHHHHHH-----HHHhccc
Confidence 1112345799999999987888777766555543 12 38999999999886522223333333 3333322
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
.....+ ...|++++.++.++++.+...+...
T Consensus 320 ~~~~~~-----~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 320 LDYAPI-----LFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp GTTSCE-----EECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred CCCCCE-----EEEecccCCCHHHHHHHHHHHHHHh
Confidence 222222 2568888999999999888877653
No 17
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.68 E-value=3.6e-16 Score=142.72 Aligned_cols=177 Identities=16% Similarity=0.182 Sum_probs=110.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCCh--HHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~~~~ 94 (363)
....+|+|+|.+|+|||||+|.|+|...+......+ .|.+.....+.. ++..+++|||||+....... .+-...+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~g-tt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAG-TTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCC-eEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 455799999999999999999999876433222222 233333333444 77789999999976422110 01011111
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
...+...+|++++|+|++..+...+..++..+.. .+ .++++|+||||+........+++... +...+.
T Consensus 271 --~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~-~~----~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~ 338 (456)
T 4dcu_A 271 --ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-AG----KAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQ 338 (456)
T ss_dssp --HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CEEEEEEECGGGSCCCSSHHHHHHHH-----HHHHCG
T ss_pred --HHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH-cC----CCEEEEEEChhcCCCchHHHHHHHHH-----HHHhcc
Confidence 1112346799999999987888887777766655 23 38999999999886422333443333 333333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHcC
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 212 (363)
......+ ..+|++++.++.++++.+...+....
T Consensus 339 ~~~~~~~-----~~~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 339 FLDYAPI-----LFMSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp GGTTSCE-----EECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred cCCCCCE-----EEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence 2222222 25688899999999999888776543
No 18
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.68 E-value=2.4e-15 Score=124.67 Aligned_cols=174 Identities=16% Similarity=0.090 Sum_probs=97.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHH-H-HHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF-V-GKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-~-~~~~~~ 95 (363)
...+|+|+|..|+|||||+|.|++.... .... ...|.......... .+..+.++||||..+....... + ...+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~-~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVD-VQSY-SFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC------CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCC-CCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4589999999999999999999987542 1111 12233333333344 5678899999998653211110 0 111111
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHH-HhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED-FLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~-~~~~~~~~~~~~~~~ 174 (363)
.....|++++|+|+++..+-.....+.++..+.......|+++|+||+|+... ..+.. .... +..+..
T Consensus 105 ----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~-----~~~~~~ 173 (228)
T 2qu8_A 105 ----LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM--DSLSIDNKLL-----IKQILD 173 (228)
T ss_dssp ----HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC----CCCHHHHHH-----HHHHHH
T ss_pred ----hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc--hhhHHHHHHH-----HHHHHH
Confidence 23466899999999844332222223333333221112389999999998754 22111 1111 333444
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+....+ ...|++.+.++.++++.|...+.
T Consensus 174 ~~~~~~~~----~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 174 NVKNPIKF----SSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp HCCSCEEE----EECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCCceE----EEEecccCCCHHHHHHHHHHHHH
Confidence 33311111 25678888999999998777653
No 19
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.68 E-value=2.2e-14 Score=121.99 Aligned_cols=164 Identities=20% Similarity=0.203 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|+|++|||||||+|+|+|... ..+.. .++|.......+.+ ++..+.++||||+.+....... ..+.+. ..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~-~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~-~~ 77 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQ-HVGNW-PGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSID--ELIARN-FI 77 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCE-EEEEC-TTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHH--HHHHHH-HH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc-ccCCC-CCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHH--HHHHHH-hh
Confidence 6999999999999999999998864 22222 23455555555555 7778999999998865432221 122222 22
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
....+|++++|+|++ .. ......+..+... +. .|+++|+||+|+... .. .. .....+...++..
T Consensus 78 ~~~~~d~vi~v~D~~-~~-~~~~~~~~~~~~~-~~---~p~ilv~NK~Dl~~~--~~----~~----~~~~~l~~~lg~~ 141 (271)
T 3k53_A 78 LDGNADVIVDIVDST-CL-MRNLFLTLELFEM-EV---KNIILVLNKFDLLKK--KG----AK----IDIKKMRKELGVP 141 (271)
T ss_dssp HTTCCSEEEEEEEGG-GH-HHHHHHHHHHHHT-TC---CSEEEEEECHHHHHH--HT----CC----CCHHHHHHHHSSC
T ss_pred hccCCcEEEEEecCC-cc-hhhHHHHHHHHhc-CC---CCEEEEEEChhcCcc--cc----cH----HHHHHHHHHcCCc
Confidence 235789999999987 32 1222222222221 21 389999999996533 11 00 0133344444433
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
++ .+|+..+.++.++++.+...+...
T Consensus 142 ~~------~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 142 VI------PTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp EE------ECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred EE------EEEeCCCCCHHHHHHHHHHHHhcc
Confidence 33 568888999999999999887654
No 20
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.67 E-value=3.8e-16 Score=131.14 Aligned_cols=161 Identities=16% Similarity=0.170 Sum_probs=99.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~~~~~ 97 (363)
.+|+|+|.+|||||||+|.|+|.....+ .. .++|++.....+.+ ++..+.++||||......... ...+.+.+..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~-~~-pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVG-NW-PGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEE-EC-TTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCcc-CC-CCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 4899999999999999999999864222 22 33455555555555 778999999999876542100 1122233222
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
. ....+|++++|+|++ .+ ...+.+...+... ..|+++|+||+|.... ..+.. ....+...++
T Consensus 79 ~-~~~~~d~vi~VvDas-~~----~~~~~l~~~l~~~--~~pvilv~NK~Dl~~~--~~~~~--------~~~~l~~~lg 140 (256)
T 3iby_A 79 V-IDLEYDCIINVIDAC-HL----ERHLYLTSQLFEL--GKPVVVALNMMDIAEH--RGISI--------DTEKLESLLG 140 (256)
T ss_dssp H-HHSCCSEEEEEEEGG-GH----HHHHHHHHHHTTS--CSCEEEEEECHHHHHH--TTCEE--------CHHHHHHHHC
T ss_pred H-hhCCCCEEEEEeeCC-Cc----hhHHHHHHHHHHc--CCCEEEEEEChhcCCc--CCcHH--------HHHHHHHHcC
Confidence 2 125789999999998 31 1222222222221 2389999999997643 11110 1223333334
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
..++ ..|+..+.++.+|++.+.+.
T Consensus 141 ~~vi------~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 CSVI------PIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp SCEE------ECBGGGTBSHHHHHHHHHTC
T ss_pred CCEE------EEECCCCCCHHHHHHHHHhh
Confidence 3333 56888899999999998877
No 21
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.66 E-value=1.7e-15 Score=118.42 Aligned_cols=158 Identities=21% Similarity=0.240 Sum_probs=98.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|+|..|+|||||+|.|++........ ..+.+.......... ++..+.++||||....... ...+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~----~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVAD-VPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDKW----EKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSSC----CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccC-CCCceecceEEEEEe-CCceEEEEECCCCCCccch----HHHHHHHHHH
Confidence 489999999999999999999765311111 122233333444444 6778999999998763211 1223333334
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
.....|++++|+|.++.++..+......+.. .+ .|+++|+||+|+... . +.... +. ..+.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~----~p~ilv~nK~Dl~~~--~---~~~~~--------~~-~~~~- 135 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRR-KG----KPVILVATKVDDPKH--E---LYLGP--------LY-GLGF- 135 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHH-HT----CCEEEEEECCCSGGG--G---GGCGG--------GG-GGSS-
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHh-cC----CCEEEEEECcccccc--h---HhHHH--------HH-hCCC-
Confidence 4567899999999986777766655555544 22 289999999998754 1 11111 11 1121
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
......|++.+.++.++++.+.+.
T Consensus 136 ----~~~~~~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 136 ----GDPIPTSSEHARGLEELLEAIWER 159 (161)
T ss_dssp ----CSCEECBTTTTBSHHHHHHHHHHH
T ss_pred ----CCeEEEecccCCChHHHHHHHHHh
Confidence 122366788889999999877654
No 22
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.66 E-value=4.7e-15 Score=117.04 Aligned_cols=162 Identities=15% Similarity=0.081 Sum_probs=96.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|+|..|+|||||+|.|++.... . ...|.......+.+ ++..+.++||||... +....
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~----~-~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~~ 68 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV----T-TIPTIGFNVETVTY-KNLKFQVWDLGGLTS-----------IRPYW 68 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC----C-CCCCSSEEEEEEEE-TTEEEEEEEECCCGG-----------GGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC----C-cCCcCccceEEEEE-CCEEEEEEECCCChh-----------hhHHH
Confidence 3479999999999999999999866531 1 11233333344445 678899999999653 12223
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...|++++|+|+++..+-... ..+..+..... ....|+++|+||+|+... ...+++... +. ....
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~~ 138 (171)
T 1upt_A 69 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQA--MTSSEMANS-----LG--LPAL 138 (171)
T ss_dssp GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----HT--GGGC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcCC--CCHHHHHHH-----hC--chhc
Confidence 3455688999999999844333222 22222221110 012389999999998755 222222211 10 0001
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
....+ .....|+..+.++.++++.+.+.+.
T Consensus 139 ~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 139 KDRKW---QIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp TTSCE---EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCce---EEEECcCCCCcCHHHHHHHHHHHHh
Confidence 11111 1125678888999999998877664
No 23
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.66 E-value=5.2e-15 Score=141.05 Aligned_cols=123 Identities=17% Similarity=0.218 Sum_probs=75.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCc-eee--------EeE---------------------------
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT-KTC--------EMK--------------------------- 61 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t-~~~--------~~~--------------------------- 61 (363)
...+|+|+|..|+|||||+|+|+|......+...++.. +.. ...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 45799999999999999999999987643322222210 000 000
Q ss_pred ----------------EEEeeC---CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHH
Q 017924 62 ----------------TTVLKD---GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE 122 (363)
Q Consensus 62 ----------------~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~ 122 (363)
.+.+.. ...++||||||+.+... ...........+|++++|+|+++.++..+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~ 219 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGER 219 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhHH
Confidence 000000 03688999999765211 112222233468999999999877787776
Q ss_pred HHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 123 TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+.......+ .++++|+||+|....
T Consensus 220 ~~l~~~l~~~~----~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 220 RYLENYIKGRG----LTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHHTTTSC----CCEEEEEECGGGGGG
T ss_pred HHHHHHHHhhC----CCEEEEEECcccccc
Confidence 55432211112 379999999998644
No 24
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.65 E-value=5.9e-16 Score=131.56 Aligned_cols=177 Identities=16% Similarity=0.182 Sum_probs=107.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCCh--HHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~~~~~~ 96 (363)
..+|+|+|.+|||||||+|+|+|... ..+.. .++|+......+.+ .+..+.++||||..+..... ....+.+.+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~-~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNW-AGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEEC-TTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCC-CCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 37999999999999999999999874 22222 23455555555555 67789999999988754210 1122233322
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
+ .....+|++++|+|++ .+ ......+..+... + .|+++|+||+|.... ..+. . ....+...+
T Consensus 80 ~-~~~~~~d~ii~VvD~~-~~-~~~~~~~~~l~~~-~----~p~ivv~NK~Dl~~~--~~~~---~-----~~~~l~~~l 141 (274)
T 3i8s_A 80 Y-ILSGDADLLINVVDAS-NL-ERNLYLTLQLLEL-G----IPCIVALNMLDIAEK--QNIR---I-----EIDALSARL 141 (274)
T ss_dssp H-HHHTCCSEEEEEEEGG-GH-HHHHHHHHHHHHH-T----CCEEEEEECHHHHHH--TTEE---E-----CHHHHHHHH
T ss_pred H-HhhcCCCEEEEEecCC-Ch-HHHHHHHHHHHhc-C----CCEEEEEECccchhh--hhHH---H-----HHHHHHHhc
Confidence 2 2235789999999987 32 2223333333332 2 389999999997543 1110 0 122333333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHHcC--CCCCCHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG--GQPYTDELKR 222 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~~~ 222 (363)
+..++ ..|+..+.++.+|++.+...+.... ...|...+..
T Consensus 142 g~~~i------~~SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~~l~~ 183 (274)
T 3i8s_A 142 GCPVI------PLVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLN 183 (274)
T ss_dssp TSCEE------ECCCGGGHHHHHHHHHHHTCCCCCCCCCCCCCHHHHH
T ss_pred CCCEE------EEEcCCCCCHHHHHHHHHHHHhcCCCcccCCCHHHHH
Confidence 43333 5678889999999998877654321 1235555544
No 25
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.65 E-value=2.2e-15 Score=121.07 Aligned_cols=160 Identities=14% Similarity=0.076 Sum_probs=93.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|+|..|+|||||+|.|++... ......|....+..+.. .+..+.++||||... +....
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~ 84 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQF----NEDMIPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSMW 84 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC----CCSCCCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCC----CCccCCCCceeEEEEEe-CCEEEEEEECCCCHh-----------HHHHH
Confidence 357999999999999999999997653 11112233333333444 678899999999532 22222
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
...+..+|++++|+|+++.-+-.. ...++..+... ....++++|+||+|+... ...+++... +.. ..
T Consensus 85 ~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~~~--~~ 153 (188)
T 1zd9_A 85 ERYCRGVSAIVYMVDAADQEKIEA--SKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEK-----MNL--SA 153 (188)
T ss_dssp HHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHH-----TTG--GG
T ss_pred HHHHccCCEEEEEEECCCHHHHHH--HHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHH-----hCh--hh
Confidence 233457899999999873322222 12222222211 122389999999998754 222222221 100 00
Q ss_pred c-CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 C-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
. .....+ ...|++.+.++.++++.|...+
T Consensus 154 ~~~~~~~~----~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 154 IQDREICC----YSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp CCSSCEEE----EECCTTTCTTHHHHHHHHHHTC
T ss_pred hccCCeeE----EEEECCCCCCHHHHHHHHHHHH
Confidence 0 111111 2568888899999999876644
No 26
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.65 E-value=4.7e-15 Score=118.85 Aligned_cols=163 Identities=13% Similarity=0.068 Sum_probs=99.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|..|+|||||+|.|++... ... ..|.......+.+ ++..+.++||||.. .+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~---~~t~~~~~~~~~~-~~~~~~~~Dt~G~~-----------~~~~~ 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDV--DTI---SPTLGFNIKTLEH-RGFKLNIWDVGGQK-----------SLRSY 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCC--SSC---CCCSSEEEEEEEE-TTEEEEEEEECCSH-----------HHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC--Ccc---cccCccceEEEEE-CCEEEEEEECCCCH-----------hHHHH
Confidence 4568999999999999999999997662 111 1122233334444 67889999999953 23334
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+-.+. ..+..+..... ....|+++|+||+|+... ...++.... +. +..
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~ 148 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPGA--LSCNAIQEA-----LE--LDS 148 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGG
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCCC--CCHHHHHHH-----hC--hhh
Confidence 44556789999999999744332221 22222222111 112389999999998754 322222211 10 000
Q ss_pred c-CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 C-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
. ...+. ....|++.+.++.++++.+.+.+..
T Consensus 149 ~~~~~~~----~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 149 IRSHHWR----IQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp CCSSCEE----EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ccCCceE----EEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 1 11111 1256788899999999998887754
No 27
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.64 E-value=6.7e-15 Score=123.75 Aligned_cols=162 Identities=19% Similarity=0.188 Sum_probs=101.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|.+|+|||||+|.|+|..... +... ++|+......+.. .+..+.++||||......... .+.+.+.+.
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~-~~~p-g~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~~ 79 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYV-ANWP-GVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARDYL 79 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEE-EECT-TSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcc-cCCC-CceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHHHH
Confidence 4799999999999999999999876432 2222 3455544444444 678899999999876543221 122222222
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
. ...+|++++|+|++ .+.. ...++..+.. .. .|+++|+||+|.... ..+. .....+...++.
T Consensus 80 ~-~~~~d~ii~V~D~t-~~~~-~~~~~~~l~~---~~--~pvilv~NK~Dl~~~--~~i~--------~~~~~l~~~lg~ 141 (258)
T 3a1s_A 80 L-KGDADLVILVADSV-NPEQ-SLYLLLEILE---ME--KKVILAMTAIDEAKK--TGMK--------IDRYELQKHLGI 141 (258)
T ss_dssp H-HSCCSEEEEEEETT-SCHH-HHHHHHHHHT---TT--CCEEEEEECHHHHHH--TTCC--------BCHHHHHHHHCS
T ss_pred h-hcCCCEEEEEeCCC-chhh-HHHHHHHHHh---cC--CCEEEEEECcCCCCc--cchH--------HHHHHHHHHcCC
Confidence 1 14789999999998 4322 2222233322 12 389999999997533 1110 113334444443
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.++ ..|+..+.++.+|++.+.....
T Consensus 142 ~vi------~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 142 PVV------FTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred CEE------EEEeeCCcCHHHHHHHHHHHhh
Confidence 333 5678889999999999988765
No 28
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.64 E-value=2.7e-15 Score=120.51 Aligned_cols=159 Identities=20% Similarity=0.185 Sum_probs=91.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee-eEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||+|.|++... ......|+. ........ ++. .+.++||||....... .
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~--------~ 69 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHF----VDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAM--------R 69 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSC----CCCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTT--------H
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHH--------H
Confidence 347999999999999999999997653 111122222 22222233 443 4678999996653211 1
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
. ..+...|++++|+++++..+... ..++..+..... ....|+++|+||+|+... ....+. ...+.
T Consensus 70 ~---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~--~~~~~~--------~~~~~ 135 (189)
T 4dsu_A 70 D---QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSR--TVDTKQ--------AQDLA 135 (189)
T ss_dssp H---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSC--SSCHHH--------HHHHH
T ss_pred H---HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCccc--ccCHHH--------HHHHH
Confidence 1 11224699999999873322122 223334443322 122389999999998754 222222 22233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
...+..++ ..|+..+.++.++++.+...+.
T Consensus 136 ~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 136 RSYGIPFI------ETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp HHHTCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 33343333 4577788999999998777654
No 29
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.64 E-value=1.8e-15 Score=120.63 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=96.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||+|.|++.... .....+.+.......+.+ ++ ..+.++||||..... .
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~ 73 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS--GSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFR-----------T 73 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCS-----------S
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC--CccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhh-----------h
Confidence 3479999999999999999999977541 122223333333444444 44 578899999954321 1
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.....+...|++++|+|+++..+... ..++..+..... ..|+++|+||+|+........++ ...+..
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~ 141 (181)
T 3tw8_B 74 ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERKVVETED---------AYKFAG 141 (181)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhcccCHHH---------HHHHHH
Confidence 22234567899999999874322222 123333333322 23899999999976541111111 222333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+..++ ..|+..+.++.++++.+.+.+.
T Consensus 142 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 142 QMGIQLF------ETSAKENVNVEEMFNCITELVL 170 (181)
T ss_dssp HHTCCEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 3343333 4677788999999998877653
No 30
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.64 E-value=3.7e-15 Score=122.33 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=71.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||++.|++... .. ... ++......+.+.+ +..+.++||||... ....+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~-~~---~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~- 71 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQY-RD---TQT-SITDSSAIYKVNNNRGNSLTLIDLPGHES-------LRFQL- 71 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCC-CC---BCC-CCSCEEEEEECSSTTCCEEEEEECCCCHH-------HHHHH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc-cc---ccC-CcceeeEEEEecCCCccEEEEEECCCChh-------HHHHH-
Confidence 3457999999999999999999997653 21 111 2222233344422 56799999999542 11112
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhc----cccccceEEEEeCCCCCCc
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG----KNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~i~v~n~~D~~~~ 152 (363)
....+.++|++++|+|++ .+..........+...+. .....|+++|.||+|+...
T Consensus 72 --~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 72 --LDRFKSSARAVVFVVDSA-AFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp --HHHHGGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred --HHHHHhhCCEEEEEEECC-CcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 222356789999999987 332222233333332211 1112389999999999765
No 31
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.64 E-value=1.1e-15 Score=123.36 Aligned_cols=161 Identities=12% Similarity=0.081 Sum_probs=97.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE-EEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|+|..|+|||||+|.|++... ......|+...+.. ... ++ ..+.++||||... +
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~ 84 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI----PTAYVPTVFENFSHVMKY-KNEEFILHLWDTAGQEE-----------Y 84 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC----CSSCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------G
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC----CCccCCeeeeeeEEEEEE-CCEEEEEEEEECCCcHH-----------H
Confidence 3457999999999999999999997653 11112222222222 222 44 3468999999543 2
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcc-hhhHHHHhccCCCchHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLK 170 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~-~~~l~~~~~~~~~~~~~ 170 (363)
.......+..+|++++|+|+++..+-.+ ..++..+..... . .|+++|.||+|+.... +....+. ..
T Consensus 85 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~~~~~~~~~~--------~~ 153 (194)
T 3reg_A 85 DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-T--AKTVLVGLKVDLRKDGSDDVTKQE--------GD 153 (194)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--SEEEEEEECGGGCCTTTTCCCHHH--------HH
T ss_pred HHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccCCCCcccHHH--------HH
Confidence 2233445668899999999984332222 234444444322 2 3899999999987430 0111111 22
Q ss_pred HHHHhcCCc-eEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 171 EILQLCDNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 171 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.+....+.. ++ ..|++.+.++.++++.+.+.+..
T Consensus 154 ~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 154 DLCQKLGCVAYI------EASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp HHHHHHTCSCEE------ECBTTTTBSHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCEEE------EeecCCCCCHHHHHHHHHHHHHh
Confidence 333333433 33 46788899999999988776643
No 32
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.64 E-value=1.9e-15 Score=137.39 Aligned_cols=165 Identities=16% Similarity=0.160 Sum_probs=88.1
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+.+|+|+|.+|+|||||+|.|+|.......... +.|.+.....+.+ ++..+.++||||+.+.. ..+.........
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~-gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~---~~ve~~gi~~~~ 307 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMP-GTTRDYIEECFIH-DKTMFRLTDTAGLREAG---EEIEHEGIRRSR 307 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCC-CceEEEEEEEEEE-CCeEEEEEECCCCCcch---hHHHHHHHHHHH
Confidence 468999999999999999999987542111111 2233333344455 78899999999986531 111111122234
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
..+..+|++++|+|+++..+.........+...+. + .++++|+||+|+... ..... .. +... . . .
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~--~piIvV~NK~Dl~~~--~~~~~--~~-----l~~~-~-~-~ 372 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAHP-A--AKFLTVANKLDRAAN--ADALI--RA-----IADG-T-G-T 372 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-T--SEEEEEEECTTSCTT--THHHH--HH-----HHHH-H-T-S
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-C--CCEEEEEECcCCCCc--cchhH--HH-----HHhc-C-C-C
Confidence 45678999999999986666532222222222222 1 389999999999865 32221 11 2111 0 1 1
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
. ....|++++.++.+|++.|...+.
T Consensus 373 ~------~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 373 E------VIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp C------EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred c------eEEEEECCCCCHHHHHHHHHHHHh
Confidence 1 235688899999999999998886
No 33
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.64 E-value=9e-15 Score=119.96 Aligned_cols=167 Identities=19% Similarity=0.131 Sum_probs=88.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||++.|++... .. ....+. .......+.. ++ ..+.++||||.... ..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~-~~-~~~~t~-~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-----------~~ 97 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAF-PE-SYTPTV-FERYMVNLQV-KGKPVHLHIWDTAGQDDY-----------DR 97 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCC-CEEEEEEEEE-TTEEEEEEEEEC-------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CC-CCCCcc-ceeEEEEEEE-CCEEEEEEEEECCCchhh-----------hH
Confidence 457999999999999999999997653 11 111111 1111222233 33 36789999995432 12
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc----CC-Cch
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PKP 168 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~----~~-~~~ 168 (363)
.....+..+|++++|+|+++..+-... .++..+..... . .|+++|+||+|+... ....+.+.. .. ...
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 172 (214)
T 2j1l_A 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-K--VPIIVVGCKTDLRKD--KSLVNKLRRNGLEPVTYHR 172 (214)
T ss_dssp -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECGGGGSC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhhcc--chhhhhhcccccCcccHHH
Confidence 222345678999999998733222221 23444443322 2 389999999998765 333222210 00 011
Q ss_pred HHHHHHhcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
...+....+. .++ ..|++.+.++.++++.|.+.+..
T Consensus 173 ~~~~~~~~~~~~~~------~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 173 GQEMARSVGAVAYL------ECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp HHHHHHHTTCSEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence 2334444443 333 56788889999999988776654
No 34
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.63 E-value=9.1e-15 Score=117.57 Aligned_cols=159 Identities=19% Similarity=0.159 Sum_probs=90.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
..+|+|+|..|+|||||+|.|++... .. .... ++... ...+.. ++ ..+.++||||.... ..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~-~~~~--t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~ 84 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHF-VD-EYDP--TIEDSYRKQVVI-DGETCLLDILDTAGQEEY-----------SA 84 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CS-CCCT--TCCEEEEEEEEE-TTEEEEEEEEECCC-----------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCC-cc-ccCC--ccceEEEEEEEE-CCEEEEEEEEECCChHHH-----------HH
Confidence 36999999999999999999997653 11 1111 22222 222333 33 35789999995431 22
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.....+...|++++|+++++..+..+ ..++..+..... ....++++|+||+|+... ....+. ...+..
T Consensus 85 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~--~~~~~~--------~~~~~~ 153 (190)
T 3con_A 85 MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTR--TVDTKQ--------AHELAK 153 (190)
T ss_dssp -----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCC--CSCHHH--------HHHHHH
T ss_pred HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCcc--cCCHHH--------HHHHHH
Confidence 22334567899999999873322222 223344444332 112389999999998753 211111 222333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
..+..++ ..|+..+.++.++++.|.+.+..
T Consensus 154 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 154 SYGIPFI------ETSAKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp HHTCCEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 3333333 45777889999999988776644
No 35
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.63 E-value=2.8e-15 Score=120.65 Aligned_cols=165 Identities=15% Similarity=0.045 Sum_probs=96.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|..|+|||||+|.|++...+... ...|.......+.+ ++..+.++||||..... ..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~~ 83 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKFKS-SSLSFTVFDMSGQGRYR-----------NL 83 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEEEC-SSCEEEEEEECCSTTTG-----------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEEEE-CCEEEEEEECCCCHHHH-----------HH
Confidence 44589999999999999999999987632221 12233333344444 57889999999965421 12
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhcc-ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+..+|++++|+|+++..+-.. ...+..+...... ....++++|+||+|+... ...++.... +. +.
T Consensus 84 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~ 154 (190)
T 2h57_A 84 WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQL-----LC--LE 154 (190)
T ss_dssp GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHH-----HT--GG
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHH-----hC--hh
Confidence 2334467899999999873221111 1223333222110 012489999999999754 222222111 10 01
Q ss_pred hcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.... .+.+ ...|++.+.++.++++.|.+.+.
T Consensus 155 ~~~~~~~~~----~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 155 NIKDKPWHI----CASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp GCCSSCEEE----EECBTTTTBTHHHHHHHHHHHC-
T ss_pred hccCCceEE----EEccCCCCcCHHHHHHHHHHHHH
Confidence 1111 1111 25688888999999998877653
No 36
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.63 E-value=2.8e-15 Score=121.21 Aligned_cols=161 Identities=19% Similarity=0.170 Sum_probs=97.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++.... . ....+.+.......+.. ++ ..+.++||||...... .
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~ 81 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYT-E-SYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT-----------I 81 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-S-CCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCT-----------T
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC-C-CCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhh-----------h
Confidence 479999999999999999999976531 1 22223333344444444 44 4688999999543211 1
Q ss_pred HhccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...|++++|+|+++..+.. ...++..+....... .++++|+||+|+........+ . ...+...
T Consensus 82 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~~~~~~~-~--------~~~~~~~ 150 (196)
T 3tkl_A 82 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTKKVVDYT-T--------AKEFADS 150 (196)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHH-H--------HHHHHHH
T ss_pred HHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccccCHH-H--------HHHHHHH
Confidence 112235689999999987322211 123444444443323 389999999998754111111 1 2223334
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.+..++ ..|+..+.++.++++.|.+.+..
T Consensus 151 ~~~~~~------~~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 151 LGIPFL------ETSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp TTCCEE------EECTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCcEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 444444 45777889999999988776644
No 37
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.63 E-value=3.5e-15 Score=135.55 Aligned_cols=177 Identities=19% Similarity=0.200 Sum_probs=100.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH-HH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV-KC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~ 96 (363)
...+|+|||++|||||||+|.|+|..........+ .|.+.....+.+ ++..+.++||+|+........+....+. ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~g-tT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPG-TTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCC-CcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 34799999999999999999999886422222222 232333333444 7778899999997432110000000000 00
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
........|++++++|+....+..+......+.. .+ .++++|+||||+........+++... +...+...
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-~~----~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~ 326 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMER-RG----RASVVVFNKWDLVVHREKRYDEFTKL-----FREKLYFI 326 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CEEEEEEECGGGSTTGGGCHHHHHHH-----HHHHCGGG
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECccCCCchhhHHHHHHHH-----HHHHhccC
Confidence 0112235689999999886677666544444332 23 28999999999876422223333322 22222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
....+ ...|++++.++.+|++.+.......
T Consensus 327 ~~~~~-----~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 327 DYSPL-----IFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp TTSCE-----EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCcE-----EEEECCCCCCHHHHHHHHHHHHHhh
Confidence 22222 2568889999999999998877654
No 38
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.63 E-value=4e-15 Score=135.17 Aligned_cols=165 Identities=19% Similarity=0.216 Sum_probs=102.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|||.+|+|||||+|.|+|......... .++|.+.....+.+ ++..+.++||+|+.... ...+...+......
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~-~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDE-EGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCC-CCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence 3799999999999999999998764211122 22344444555566 78889999999987421 11112334444445
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
++..+|++++|+|+...++..+.....++... + .++++|+||+|.... . .... ..++. ..+.
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-~----~p~ilv~NK~D~~~~--~--~~~~-------~~~~~-~lg~- 139 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-T----VDTILVANKAENLRE--F--EREV-------KPELY-SLGF- 139 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-T----CCEEEEEESCCSHHH--H--HHHT-------HHHHG-GGSS-
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEeCCCCccc--c--HHHH-------HHHHH-hcCC-
Confidence 56789999999999877887776665555542 2 389999999997522 1 1111 01122 1121
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
......|+..+.++.+|++.+...+..
T Consensus 140 ----~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 140 ----GEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp ----CSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ----CCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 112356888999999999998877754
No 39
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.63 E-value=2.3e-15 Score=122.48 Aligned_cols=165 Identities=18% Similarity=0.098 Sum_probs=94.0
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEeeCCc--EEEEEeCCCCCCCCCChHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKE 92 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~ 92 (363)
.....+|+|+|..|+|||||++.+++... ......++...+. .+.. ++. .+.++||||....
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~---------- 91 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAF----PGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDY---------- 91 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCC----CC-CCCCSEEEEEEEEEC-C-CEEEEEEEEECCSGGG----------
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCC----CCCcCCeecceeEEEEEE-CCEEEEEEEEECCCchhh----------
Confidence 45568999999999999999999986543 1111122222222 2222 443 4559999996432
Q ss_pred HHHHHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc----CC-
Q 017924 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC- 165 (363)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~----~~- 165 (363)
.......+..+|++++|+|+++..+..+. .++..+..... . .++++|+||+|+... ....+.+.. ..
T Consensus 92 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~ 165 (204)
T 4gzl_A 92 -DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD--KDTIEKLKEKKLTPIT 165 (204)
T ss_dssp -TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECHHHHTC--HHHHHHHHHTTCCCCC
T ss_pred -HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhccc--hhhhhhhhcccccccc
Confidence 22233456688999999998733332222 23444444331 2 389999999998765 222221111 00
Q ss_pred CchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
......+....+...++ ..|++.+.++.++++.+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~-----~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 166 YPQGLAMAKEIGAVKYL-----ECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp HHHHHHHHHHTTCSEEE-----ECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEE-----EeeCCCCCCHHHHHHHHHH
Confidence 01122333333332222 5688889999999988765
No 40
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.62 E-value=2.9e-15 Score=120.77 Aligned_cols=163 Identities=17% Similarity=0.160 Sum_probs=92.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||+|.|++.... . ....+.+.+.....+.+ ++ ..+.++||||.... .....
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~-~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-------~~~~~ 93 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFC-E-ACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF-------NSITS 93 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGG-------HHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-c-CCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHH-------HHHHH
Confidence 34579999999999999999999976531 1 11222333333334444 43 46889999995431 11111
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
..+...|++++|+|+++..+..+ ..++..+....... .++++|+||+|+........+ . ...+.
T Consensus 94 ----~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~~~~v~~~-~--------~~~~~ 158 (192)
T 2il1_A 94 ----AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETDREITRQ-Q--------GEKFA 158 (192)
T ss_dssp ----HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHH-H--------HHHHH
T ss_pred ----HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHH-H--------HHHHH
Confidence 12235799999999873333222 22334444433222 389999999998643101111 1 22233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.......++ ..|++.+.++.++++.|.+.+.
T Consensus 159 ~~~~~~~~~-----~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 159 QQITGMRFC-----EASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp HTSTTCEEE-----ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HhcCCCeEE-----EEeCCCCCCHHHHHHHHHHHHH
Confidence 332222222 5678888999999998876653
No 41
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.62 E-value=5e-15 Score=116.29 Aligned_cols=161 Identities=20% Similarity=0.101 Sum_probs=83.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..+|+|+|..|+|||||+|.|+|......... ..++.. ...... ....+.++||+|.... ....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~ 66 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEA--AGHTYD--RSIVVDGEEASLMVYDIWEQDGG-----------RWLP 66 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------CEEE--EEEEETTEEEEEEEEECC--------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCc--cccceE--EEEEECCEEEEEEEEECCCCccc-----------hhhh
Confidence 37999999999999999999997654211111 112211 122221 2346789999996542 1122
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...|++++|+|+++.-+-.. ..++..+..... ....|+++|.||+|+........+ . ...+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~-~--------~~~~~~~~ 136 (166)
T 3q72_A 67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVD-E--------GRACAVVF 136 (166)
T ss_dssp ------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHH-H--------HHHHHHHT
T ss_pred hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHH-H--------HHHHHHHh
Confidence 233457899999999873322122 222333332211 112389999999998754111111 1 11223333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+..++ ..|+..+.++.++++.+.+.+..
T Consensus 137 ~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 137 DCKFI------ETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp TCEEE------ECBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCcEE------EeccCCCCCHHHHHHHHHHHHHh
Confidence 33333 56888899999999988776643
No 42
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.62 E-value=5.3e-15 Score=116.64 Aligned_cols=159 Identities=15% Similarity=0.135 Sum_probs=93.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++.... . ....+.+.......+.. ++ ..+.++||||... +...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~-~-~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~ 71 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFN-D-KHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQER-----------FHAL 71 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCC-S-SCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC-----------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC-c-CCCCccceEEEEEEEEE-CCEEEEEEEEECCCcHh-----------hhhh
Confidence 479999999999999999999976531 1 11111222222222333 33 3678899999543 2223
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...|++++|+|+++..+... ..++..+....... .++++|+||+|+........++ ...+...
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 140 (170)
T 1z08_A 72 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKERHVSIQE---------AESYAES 140 (170)
T ss_dssp -CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccccccCHHH---------HHHHHHH
Confidence 3445668899999999873322222 23344444444333 3899999999986531111111 2233344
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|+..+.++.++++.+.+.+
T Consensus 141 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 141 VGAKHY------HTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp TTCEEE------EEBTTTTBSHHHHHHHHHHHH
T ss_pred cCCeEE------EecCCCCCCHHHHHHHHHHHH
Confidence 343333 467788899999999887655
No 43
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.62 E-value=7.6e-15 Score=117.04 Aligned_cols=161 Identities=19% Similarity=0.171 Sum_probs=94.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||+|.|++... .. ....|+... ...... ++ ..+.++||||......
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~---------- 69 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VD---SYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSI---------- 69 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CS---CCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCC----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CC---CCCCCccccEEEEEEE-CCEEEEEEEEeCCCchhhhH----------
Confidence 347999999999999999999985543 11 111222222 222233 44 4668999999765321
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
.....+...|++++|+|+++.-+... ..++..+...+.. ...|+++|+||+|+........+ . ...+.
T Consensus 70 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~-~--------~~~~~ 138 (181)
T 3t5g_A 70 -FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISYE-E--------GKALA 138 (181)
T ss_dssp -CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHH-H--------HHHHH
T ss_pred -HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecHH-H--------HHHHH
Confidence 12234457899999999873222222 2233333333221 12389999999998643111111 1 22333
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
...+..++ ..|+..+.++.++++.+...+..
T Consensus 139 ~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 139 ESWNAAFL------ESSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp HHTTCEEE------ECCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHhCCcEE------EEecCCCCCHHHHHHHHHHHHHH
Confidence 44444333 46788899999999988877654
No 44
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=5.6e-15 Score=118.51 Aligned_cols=160 Identities=15% Similarity=0.068 Sum_probs=92.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|+|..|+|||||+|.|++.......++.+ .....+.+ ++..+.++||||..... ...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~-----~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~~ 77 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG-----SNVEEIVI-NNTRFLMWDIGGQESLR-----------SSW 77 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSC-----SSCEEEEE-TTEEEEEEECCC----C-----------GGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCc-----cceEEEEE-CCEEEEEEECCCCHhHH-----------HHH
Confidence 45899999999999999999999655322222221 12223334 67889999999975421 111
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..+|++++|+|+++.-+-.. ..++..+..... ....++++|+||+|+... ...++.... +.. ...
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~~--~~~ 147 (187)
T 1zj6_A 78 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQF-----LKL--TSI 147 (187)
T ss_dssp HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----HTG--GGC
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCC--CCHHHHHHH-----hCh--hhh
Confidence 222357899999999984433332 223333322210 112389999999998754 222222111 100 001
Q ss_pred C-CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
. ..+. ....|+..+.++.++++.|.+.+
T Consensus 148 ~~~~~~----~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 148 KDHQWH----IQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp CSSCEE----EEECBTTTTBTHHHHHHHHHHHH
T ss_pred cCCCcE----EEEccCCCCcCHHHHHHHHHHHH
Confidence 1 1111 12568888999999999887765
No 45
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.62 E-value=1.3e-15 Score=137.83 Aligned_cols=161 Identities=18% Similarity=0.193 Sum_probs=95.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
+.+|+|+|.+|+|||||+|.|+|......... .+.|.+.....+.+ ++..++++||||+.+.. ..+...-.....
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~-~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~---~~ve~~gi~~~~ 298 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDL-PGTTRDVVESQLVV-GGIPVQVLDTAGIRETS---DQVEKIGVERSR 298 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCC-TTCCHHHHHHEEEE-TTEEEEECC-----------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCC-CCeeEEEEEEEEEE-CCEEEEEEECCccccch---hHHHHHHHHHHh
Confidence 46899999999999999999998754211111 22233333333444 78889999999986531 111111122233
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.....+|++++|+|.++.++..+..++..+.. .|+++|+||+|+... .... .+.. +. ...
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~--~~~~-~~~~-----~~-----~~~ 358 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK--QLIT-SLEY-----PE-----NIT 358 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG--GGST-TCCC-----CT-----TCC
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc--hhhH-HHHH-----hc-----cCC
Confidence 45568899999999987777776555554432 289999999998765 2211 1111 10 011
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
. ....|++.+.++.+|++.|.+.+..
T Consensus 359 ~------~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 359 Q------IVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp C------EEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred c------EEEEECCCCCCHHHHHHHHHHHHhc
Confidence 1 2356888899999999999888754
No 46
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.62 E-value=7.4e-15 Score=115.09 Aligned_cols=158 Identities=13% Similarity=0.079 Sum_probs=91.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|+|..|+|||||+|.|++... .. . ..|.......+.. .+..+.++||||... +......
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~-~~---~-~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~ 63 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEI-VT---T-IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH 63 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCS-SC---C-CCCSSCCEEEEEC-SSCEEEEEECCCCGG-----------GHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCc-Cc---c-cCcCceeEEEEEE-CCEEEEEEEcCCChh-----------hHHHHHH
Confidence 3799999999999999999986653 11 1 1122222223333 567899999999643 1122223
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
.+..+|++++|+|+++.-+-.. ...++...... ....|+++|.||+|+... ...+++... +. .....
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~~~ 132 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDK-----LG--LHSLR 132 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGGCS
T ss_pred HhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHH-----hC--ccccc
Confidence 4567899999999874422222 11223332221 112389999999998754 222222221 10 00011
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...+. ....|+..+.++.++++.+...+
T Consensus 133 ~~~~~---~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 133 HRNWY---IQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp SCCEE---EEECBTTTTBTHHHHHHHHHHHC
T ss_pred CccEE---EEEcccCCCcCHHHHHHHHHHHH
Confidence 11111 22568888999999999877654
No 47
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.62 E-value=1e-14 Score=114.50 Aligned_cols=160 Identities=18% Similarity=0.149 Sum_probs=91.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++... .. ....+.. ......+.. ++ ..+.++||||.... ..+...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~-~~~~~~~-~~~~~~~~~-~~~~~~~~l~D~~G~~~~--------~~~~~~ 70 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTF-IE-KYDPTIE-DFYRKEIEV-DSSPSVLEILDTAGTEQF--------ASMRDL 70 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC-CS-CCCTTCC-EEEEEEEEE-TTEEEEEEEEECCCTTCC--------HHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC-cc-cCCCCcc-eeEEEEEEE-CCEEEEEEEEECCCchhh--------HHHHHH
Confidence 47999999999999999999986653 11 1111111 111222333 33 35789999996542 111111
Q ss_pred HhccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.....|++++|+|+++..+.. ....+..+...... ...|+++|+||+|+........+ . ...+...
T Consensus 71 ---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~ 137 (167)
T 1kao_A 71 ---YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVSSS-E--------GRALAEE 137 (167)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCCSCHH-H--------HHHHHHH
T ss_pred ---HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccccccCCHH-H--------HHHHHHH
Confidence 123468999999987322211 12333344443321 12389999999998643111111 1 1223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.+..++ ..|+..+.++.++++.+.+.+.
T Consensus 138 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 138 WGCPFM------ETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp HTSCEE------EECTTCHHHHHHHHHHHHHHHH
T ss_pred hCCCEE------EecCCCCcCHHHHHHHHHHHHh
Confidence 333333 4578889999999998877654
No 48
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.61 E-value=3.6e-15 Score=119.88 Aligned_cols=162 Identities=17% Similarity=0.103 Sum_probs=95.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
...+|+|+|..|+|||||+|.|++..... ....+.........+... ....+.++||||...... .
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~ 87 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTP--AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT-----------I 87 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC-----------S
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC--CcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh-----------h
Confidence 34799999999999999999999765311 111112222222223331 134788999999665321 1
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+... ..++..+....... .++++|+||+|+........+ . ...+...
T Consensus 88 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~ 156 (189)
T 2gf9_A 88 TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLEDERVVPAE-D--------GRRLADD 156 (189)
T ss_dssp GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH-H--------HHHHHHH
T ss_pred HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccCCCHH-H--------HHHHHHH
Confidence 2334567899999999873322221 23344444432222 389999999998653101111 1 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.+..++ ..|+..+.++.++++.|...+.
T Consensus 157 ~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 157 LGFEFF------EASAKENINVKQVFERLVDVIC 184 (189)
T ss_dssp HTCEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred cCCeEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 343333 4677888999999998876653
No 49
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.61 E-value=2.4e-14 Score=113.62 Aligned_cols=162 Identities=17% Similarity=0.077 Sum_probs=94.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||+|.|++... .. ....+.........+.+ ++ ..+.++||||... +..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~ 71 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKF-DT-QLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FRS 71 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCC-CC-----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CC-CCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchh-----------hhh
Confidence 347999999999999999999986653 11 11111222222233333 44 4788999999543 222
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
.....+...|++++|+++++..+... ..++..+...... ....|+++|+||+|+... ....+. ...+
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~~--------~~~~ 141 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER--QVSTEE--------AQAW 141 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC--SSCHHH--------HHHH
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccccc--ccCHHH--------HHHH
Confidence 33445567899999999873322221 2334444444321 012389999999998733 211111 2222
Q ss_pred HH-hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 173 LQ-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 173 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.. ..+..++ ..|+..+.++.++++.+.+.+.
T Consensus 142 ~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 142 CRDNGDYPYF------ETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp HHHTTCCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhcCCceEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 22 1122222 5677888999999998776553
No 50
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.61 E-value=3.9e-15 Score=122.02 Aligned_cols=161 Identities=15% Similarity=0.176 Sum_probs=94.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||+|.|++... .. ....+.+.......+.+ ++ ..+.++||||......
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~---------- 84 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKF-NP-SFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRT---------- 84 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCC-CC-SSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-Cc-ccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHH----------
Confidence 3457999999999999999999997653 11 11122233333333444 44 5788999999654211
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
.....+..+|++++|+|+++..+... ..++..+....... .++++|+||+|+... ....+. ...+.
T Consensus 85 -~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~--------~~~~~ 151 (213)
T 3cph_A 85 -ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETR--VVTADQ--------GEALA 151 (213)
T ss_dssp -CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCSSC--CSCHHH--------HHHHH
T ss_pred -HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--ccCHHH--------HHHHH
Confidence 11122357899999999873222111 23444454443322 389999999998433 211111 12222
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
...+..++ ..|+..+.++.++++.|...+.
T Consensus 152 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 152 KELGIPFI------ESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp HHHTCCEE------ECBTTTTBSSHHHHHHHHHHHH
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 33333333 4577788899999888776653
No 51
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.61 E-value=5.6e-15 Score=119.98 Aligned_cols=164 Identities=20% Similarity=0.183 Sum_probs=94.1
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEe-eCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
.....+|+|+|..|+|||||+|.|++... ......|+...+. .... .....+.++||||......
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------- 87 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEF----SEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI--------- 87 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCC----CSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCC---------
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCC----CCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHH---------
Confidence 34568999999999999999999997654 1111122222221 2222 1345778999999765321
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
.....+...|++++|+|+++.-+... ..++..+..... ....++++|+||+|+......... . ...+
T Consensus 88 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~-~--------~~~~ 155 (201)
T 3oes_A 88 --LPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPEREVQAV-E--------GKKL 155 (201)
T ss_dssp --CCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHH-H--------HHHH
T ss_pred --HHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCccccccCHH-H--------HHHH
Confidence 12334567899999999873222111 122222222211 112389999999998744111111 1 1223
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
....+..++ ..|++.+.++.++++.|...+..
T Consensus 156 ~~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 156 AESWGATFM------ESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp HHHHTCEEE------ECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCeEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 333343333 46788899999999988877654
No 52
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.61 E-value=5.9e-15 Score=115.82 Aligned_cols=160 Identities=16% Similarity=0.223 Sum_probs=92.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|.+|+|||||+|.|+|...... ... +.+.......+.+ ++..+.++||||........ ..+.+.....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~-~~~-~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~ 77 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIG-NWP-GVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDYI 77 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSS--HHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeecc-CCC-CcceeeeEEEEEE-CCcEEEEEECCCcccCCCcc--hhHHHHHHHH
Confidence 36899999999999999999998653211 111 2233333333444 67789999999987643211 1112222221
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.. .+++++++|+|++ ... ....++..+.. .. .++++|+||+|+... ..+ . .....+....+.
T Consensus 78 ~~-~~~~~~i~v~D~~-~~~-~~~~~~~~~~~---~~--~p~ilv~nK~Dl~~~--~~~----~----~~~~~~~~~~~~ 139 (165)
T 2wji_A 78 IN-EKPDLVVNIVDAT-ALE-RNLYLTLQLME---MG--ANLLLALNKMDLAKS--LGI----E----IDVDKLEKILGV 139 (165)
T ss_dssp HH-HCCSEEEEEEETT-CHH-HHHHHHHHHHH---TT--CCEEEEEECHHHHHH--TTC----C----CCHHHHHHHHTS
T ss_pred hc-CCCCEEEEEecCC-chh-HhHHHHHHHHh---cC--CCEEEEEEchHhccc--cCh----h----hHHHHHHHHhCC
Confidence 11 2579999999987 321 12223333322 12 389999999997532 110 0 012233333343
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
.++ ..|++.+.++.++++.+.+.
T Consensus 140 ~~~------~~SA~~~~~v~~l~~~l~~~ 162 (165)
T 2wji_A 140 KVV------PLSAAKKMGIEELKKAISIA 162 (165)
T ss_dssp CEE------ECBGGGTBSHHHHHHHHHHH
T ss_pred CEE------EEEcCCCCCHHHHHHHHHHH
Confidence 333 56888999999999987654
No 53
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.61 E-value=1e-14 Score=118.83 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=92.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC-----------------------------
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG----------------------------- 68 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------------------- 68 (363)
...+|+|+|..|+|||||+|.|++... .. ....+.........+.+ ++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTF-HE-NTNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCC-CS-SCCCCCSCEEEEEEEET-TC-----------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC-CC-CcCccccceeEEEEEEe-cCccccccccccccccccccccccccccccc
Confidence 348999999999999999999997753 11 11111111121222222 22
Q ss_pred ----------cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccc
Q 017924 69 ----------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVF 137 (363)
Q Consensus 69 ----------~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~ 137 (363)
..+.++||||...... ........+|++++|+|+++..+..+ ..++..+....+
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---- 147 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN---- 147 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----
T ss_pred cccccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----
Confidence 6788999999544221 11122346799999999873322222 233444444333
Q ss_pred cceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 138 ~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.++++|+||+|.... ....++ +..++...+..++ ..|+..+.++.++++.|...+.
T Consensus 148 ~piilv~NK~D~~~~-~~~~~~---------~~~~~~~~~~~~~------~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 148 YIIILVANKIDKNKF-QVDILE---------VQKYAQDNNLLFI------QTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp CEEEEEEECTTCC-C-CSCHHH---------HHHHHHHTTCEEE------EECTTTCTTHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCcccc-cCCHHH---------HHHHHHHcCCcEE------EEecCCCCCHHHHHHHHHHHHH
Confidence 389999999993211 111221 2233343343333 4577788999999998876653
No 54
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.61 E-value=3.1e-15 Score=117.92 Aligned_cols=160 Identities=14% Similarity=0.170 Sum_probs=93.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++... .. ....+.+.......+.+ ++ ..+.++||||.......
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~----------- 68 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKF-NP-SFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTI----------- 68 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC-CC--------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCC-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CC-CCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhh-----------
Confidence 37999999999999999999997653 11 11112222222333333 33 46789999996542211
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...|++++|+|+++..+... ..++..+....... .|+++|+||+|+... ....+. ...+...
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~--------~~~~~~~ 136 (170)
T 1g16_A 69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETR--VVTADQ--------GEALAKE 136 (170)
T ss_dssp CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTC--CSCHHH--------HHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCCcC--ccCHHH--------HHHHHHH
Confidence 1122346899999999873322211 23444444443222 389999999998433 111111 1223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.+..++ ..|+..+.++.++++.+.+.+..
T Consensus 137 ~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 137 LGIPFI------ESSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp HTCCEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 333333 46777889999999988776643
No 55
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=1.5e-14 Score=115.15 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=92.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++...... ....+.+.......+.. ++ ..+.++||||... +...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~-----------~~~~ 76 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQER-----------FRSV 76 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC-----------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCC-CcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence 47999999999999999999987654111 11111222222222233 43 3778999999543 2222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...|++++|+|+++..+... ..++..+....... .++++|+||+|+........++ ...+...
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 145 (180)
T 2g6b_A 77 THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHERVVKRED---------GEKLAKE 145 (180)
T ss_dssp --CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSCCCSCHHH---------HHHHHHH
T ss_pred HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccCcccccCHHH---------HHHHHHH
Confidence 3344567899999999873322222 23444444443322 3899999999987541111111 1222233
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.+..++ ..|+..+.++.++++.+...+.
T Consensus 146 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 146 YGLPFM------ETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp HTCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 333333 4577888999999998877654
No 56
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.61 E-value=7.7e-15 Score=127.83 Aligned_cols=127 Identities=11% Similarity=0.094 Sum_probs=67.2
Q ss_pred CCcEEEEEeCCCCCCCCCC--hHHHHHHHHHHHhccCCCccEEEEEeecC-CCCCHHH-HHHHHHHHHHhccccccceEE
Q 017924 67 DGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRFSQEE-ETAVHRLPNLFGKNVFDYMIV 142 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~~~~-~~~~~~~-~~~l~~~~~~~~~~~~~~~i~ 142 (363)
.+..++|+||||+...... ...+...+......+...+|++++|++.. ..+...+ ...+..+.. ...++++
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~-----~~~~~i~ 203 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-----EGKRTIG 203 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS-----SCSSEEE
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC-----CCCcEEE
Confidence 3467899999998752110 01122334444444455789999999873 3343233 233333321 1238999
Q ss_pred EEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccc---hhHHHHHHHHHHHHHHH
Q 017924 143 VFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKG---TEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 143 v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~ 210 (363)
|+||+|........+ +++.. .+..++..++.+. ..++.. +.++.++++.+...+..
T Consensus 204 v~NK~Dl~~~~~~~~-~~~~~--------~~~~~~~~~~~v~---~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 204 VITKLDLMDKGTDAM-EVLTG--------RVIPLTLGFIGVI---NRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp EEECTTSSCSSCCCH-HHHTT--------SSSCCTTCEEECC---CCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred EEcCcccCCcchHHH-HHHhC--------CCccCCCCeEEEe---cCChhhhccCCCHHHHHHHHHHHHhC
Confidence 999999986521112 22221 0001112333322 334444 67889999988888765
No 57
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.61 E-value=1.3e-14 Score=118.38 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=96.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++.... . ....+.+.......+.+ ++ ..+.++||||...... .
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~-~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~-----------~ 73 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYT-N-DYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRT-----------I 73 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-T-TCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTC-----------C
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-C-CCCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHH-----------H
Confidence 379999999999999999999976531 1 11122222233333334 43 3788999999654321 1
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...|++++|+|+++..+... ..++..+....... .++++|+||+|+........+ . ...+...
T Consensus 74 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~ 142 (206)
T 2bcg_Y 74 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDKRVVEYD-V--------AKEFADA 142 (206)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHH-H--------HHHHHHH
T ss_pred HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH-H--------HHHHHHH
Confidence 2234567899999999873322222 22344444433222 389999999998753111111 1 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.+..++ ..|+..+.++.++++.|...+..
T Consensus 143 ~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 143 NKMPFL------ETSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp TTCCEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 333333 45777889999999988776643
No 58
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.60 E-value=1.7e-14 Score=115.55 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=95.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++... .. ....+.+.......+.. ++ ..+.++||||... +...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~~ 75 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKF-KD-DSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQER-----------FRSV 75 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CT-TCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-CC-CCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence 47999999999999999999997653 11 11222232333333333 44 4788999999543 2223
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+... ..++..+....... .|+++|+||+|+........++ ...+...
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 144 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDADREVTFLE---------ASRFAQE 144 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHH---------HHHHHHH
Confidence 3445678899999999873222111 22333444433322 3899999999986431011111 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|+..+.++.++++.+...+
T Consensus 145 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 145 NELMFL------ETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp TTCEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEE------EecCCCCCCHHHHHHHHHHHH
Confidence 333333 457778889999998876655
No 59
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.60 E-value=1.5e-14 Score=116.03 Aligned_cols=164 Identities=16% Similarity=0.236 Sum_probs=98.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|+|.+|+|||||+|.|+|...+.. .. .+.+.......+.+ ++..+.++||||........ ..+.+...+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~-~~-~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~~ 80 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIG-NW-PGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDY 80 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEE-EC-TTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSS--HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc-CC-CCeeccceEEEEEe-CCcEEEEEECCCcCcccccc--HHHHHHHHH
Confidence 347999999999999999999998653222 22 22333444444444 67889999999987643211 111222221
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
... ..++++++|+|.+ .+ .. ...++..+.... .++++|+||+|.... ..+. .....+...++
T Consensus 81 ~~~-~~~~~~i~v~d~~-~~-~~---~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~--------~~~~~~~~~~~ 142 (188)
T 2wjg_A 81 IIN-EKPDLVVNIVDAT-AL-ER---NLYLTLQLMEMG--ANLLLALNKMDLAKS--LGIE--------IDVDKLEKILG 142 (188)
T ss_dssp HHH-HCCSEEEEEEEGG-GH-HH---HHHHHHHHHTTT--CCEEEEEECHHHHHH--TTCC--------CCHHHHHHHHT
T ss_pred Hhc-cCCCEEEEEecch-hH-HH---HHHHHHHHHhcC--CCEEEEEEhhhcccc--ccch--------HHHHHHHHHhC
Confidence 111 2468999999986 32 11 122222222222 389999999997532 1110 11334444444
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
..++ ..|++.+.++.++++.+...+..
T Consensus 143 ~~~~------~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 143 VKVV------PLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp SCEE------ECBGGGTBSHHHHHHHHHHHHTT
T ss_pred CCeE------EEEecCCCCHHHHHHHHHHHHHh
Confidence 4333 46778888999999998887754
No 60
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.60 E-value=8.5e-15 Score=115.10 Aligned_cols=159 Identities=22% Similarity=0.197 Sum_probs=90.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
+..+|+|+|..|+|||||+|.|++... . .....++.... ..+.. ++ ..+.++||||.... ..+.
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~---~~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~--------~~~~ 69 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEF-V---EDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY--------AAIR 69 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-C---SCCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---C--------HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcc-C---CCCCCCcceEEEEEEEE-CCEEEEEEEEECCCcchh--------HHHH
Confidence 457999999999999999999997653 1 11111221222 22233 33 36889999996542 1111
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
. ..+...|++++|+|+++..+-. ...++..+...... ...|+++|+||+|+........++ ...+.
T Consensus 70 ~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 136 (168)
T 1u8z_A 70 D---NYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE---------AKNRA 136 (168)
T ss_dssp H---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred H---HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCccCHHH---------HHHHH
Confidence 1 1223579999999987332211 22334444444321 123899999999986431111111 22233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...+..++ ..|+..+.++.++++.+.+.+
T Consensus 137 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 137 DQWNVNYV------ETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp HHHTCEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCeEE------EeCCCCCCCHHHHHHHHHHHH
Confidence 33333333 457778889999999887655
No 61
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.60 E-value=3.1e-15 Score=117.92 Aligned_cols=160 Identities=19% Similarity=0.136 Sum_probs=92.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..+|+|+|..|+|||||+|.|++.... . ....+...........+. ....+.++||||.... ....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-----------~~~~ 72 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFD-P-NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF-----------RALA 72 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC-T-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------GGGT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC-C-CCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhh-----------hccc
Confidence 479999999999999999999977531 1 111111212222223331 1357889999997431 1111
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.......|++++|+|+++..+... ..++..+....... .++++|.||+|+.... ....+. ...+....
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~~-~v~~~~--------~~~~~~~~ 141 (170)
T 1z0j_A 73 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDVR-EVMERD--------AKDYADSI 141 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGGC-CSCHHH--------HHHHHHHT
T ss_pred HhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCcccccc-ccCHHH--------HHHHHHHc
Confidence 223356799999999873332222 23444444432222 3788999999987531 111111 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++ ..|+..+.++.++++.|.+.+
T Consensus 142 ~~~~~------~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 142 HAIFV------ETSAKNAININELFIEISRRI 167 (170)
T ss_dssp TCEEE------ECBTTTTBSHHHHHHHHHHHC
T ss_pred CCEEE------EEeCCCCcCHHHHHHHHHHHH
Confidence 43333 457778889999998876543
No 62
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.60 E-value=6.8e-15 Score=119.65 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=93.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|..|+|||||+|.|++..... ....+.........+.... ...+.++||||... +.....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~~~ 75 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTP--AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER-----------YRTITT 75 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCS--CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--CcCCccceeEEEEEEEECCeEEEEEEEECCCchh-----------hcchHH
Confidence 799999999999999999999765311 1111222222222333311 34788999999643 122233
Q ss_pred ccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+..+|++++|+|+++..+... ..++..+....... .++++|+||+|+........+ . ...+....+
T Consensus 76 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~~~ 144 (203)
T 1zbd_A 76 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDERVVSSE-R--------GRQLADHLG 144 (203)
T ss_dssp TTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSS--CEEEEEEECTTCTTSCCSCHH-H--------HHHHHHHHT
T ss_pred HhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCcccccCHH-H--------HHHHHHHCC
Confidence 44567899999999873322121 22333443332222 389999999998753101111 1 222333334
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..++ ..|++.+.++.++++.|...+
T Consensus 145 ~~~~------~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 145 FEFF------EASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp CEEE------ECBTTTTBSSHHHHHHHHHHH
T ss_pred CeEE------EEECCCCCCHHHHHHHHHHHH
Confidence 3333 457778889999888877655
No 63
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.60 E-value=2.2e-14 Score=116.44 Aligned_cols=165 Identities=17% Similarity=0.108 Sum_probs=92.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|+|..|+|||||++.|++... .. ....|+...+. .+.. ++. .+.++||||......
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------- 83 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PT---EYIPTAFDNFSAVVSV-DGRPVRLQLCDTAGQDEFDK--------- 83 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEEEEE-TTEEEEEEEEECCCSTTCSS---------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CC---CCCCcccceeEEEEEE-CCEEEEEEEEECCCCHHHHH---------
Confidence 4458999999999999999999997652 22 11122222222 2233 443 567999999765321
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc----cCC-C
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG----HEC-P 166 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~----~~~-~ 166 (363)
.....+..+|++++|+|+++..+..+. .++..+..... . .++++|.||+|+... ......+. ... .
T Consensus 84 --~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~ 156 (201)
T 2q3h_A 84 --LRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-K--APIILVGTQSDLRED--VKVLIELDKCKEKPVPE 156 (201)
T ss_dssp --SGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--SCEEEEEECGGGGGC--HHHHHHHHTTTCCCCCH
T ss_pred --HhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhc--hhhhhhhcccccccCCH
Confidence 122345678999999998733222222 24444444332 2 389999999998754 11111110 000 0
Q ss_pred chHHHHHHhcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 167 KPLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 167 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.....+....+. .++ ..|++.+.++.++++.+...+
T Consensus 157 ~~~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 157 EAAKLLAEEIKAASYI------ECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp HHHHHHHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcEEE------EEecCCCCCHHHHHHHHHHHH
Confidence 112233333333 232 567888899999998877655
No 64
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.60 E-value=1.5e-14 Score=115.42 Aligned_cols=165 Identities=16% Similarity=0.084 Sum_probs=90.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee--CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||+|.|++.... . ....+.+.+.....+.+. ....+.++||||... +.
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~ 72 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYS-Q-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQ 72 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC-T-TC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCC-c-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH-----------hh
Confidence 34579999999999999999999876531 1 111112222222333331 135788999999543 22
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~ 171 (363)
......+...|++++|+|+++..+... ..++..+...... ....|+++|+||+|+....+....+. ...
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~--------~~~ 144 (182)
T 1ky3_A 73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKS--------AQE 144 (182)
T ss_dssp ----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHH--------HHH
T ss_pred hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHH--------HHH
Confidence 233445678899999999873322121 2334444443320 12238999999999864311111111 222
Q ss_pred HHHhc-CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 172 ILQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 172 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+.... +..++ ..|+..+.++.++++.|...+
T Consensus 145 ~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 145 LAKSLGDIPLF------LTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp HHHHTTSCCEE------EEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHhcCCCeEE------EEecCCCCCHHHHHHHHHHHH
Confidence 33212 22232 467788899999999877654
No 65
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.60 E-value=4.5e-15 Score=118.36 Aligned_cols=161 Identities=22% Similarity=0.186 Sum_probs=93.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
...+|+|+|..|+|||||+|.|++..... ....+.........+.+.+ ...+.++||||.... ...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~ 77 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVE--FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-----------HSL 77 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTT--TSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG-----------GGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC--cCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh-----------hhh
Confidence 34799999999999999999999765411 1111222222222233311 347889999995431 111
Q ss_pred HhccCCCccEEEEEeecCCCCCH-HHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+- ....++..+....... .++++|+||+|+........++ ...+...
T Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~~~~~~~~~---------~~~~~~~ 146 (181)
T 2efe_B 78 APMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN--MVMALAGNKSDLLDARKVTAED---------AQTYAQE 146 (181)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHH---------HHHHHHH
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccccCCHHH---------HHHHHHH
Confidence 12233568999999998733321 2233444444433222 3799999999986431111111 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|+..+.++.++++.|...+
T Consensus 147 ~~~~~~------~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 147 NGLFFM------ETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp TTCEEE------ECCSSSCTTHHHHHHHHHHTC
T ss_pred cCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 333333 457778899999998876644
No 66
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.60 E-value=1.2e-14 Score=116.98 Aligned_cols=163 Identities=12% Similarity=0.095 Sum_probs=91.0
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
......+|+|+|..|+|||||++.|++.......+ |.......+.. .+..+.++||||......
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~---------- 88 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY-KNICFTVWDVGGQDKIRP---------- 88 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEE-----ETTEEEEEEEE-TTEEEEEEECC-----CT----------
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccccCC-----cCceeEEEEEE-CCEEEEEEECCCCHhHHH----------
Confidence 34556899999999999999999998665311111 22222233344 678899999999754221
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
.....+..+|++++|+|+++..+-... ..++...... ....|+++|+||+|+... ...+++... +.
T Consensus 89 -~~~~~~~~~d~iilv~D~~~~~s~~~~--~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~-- 156 (192)
T 2b6h_A 89 -LWRHYFQNTQGLIFVVDSNDRERVQES--ADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDK-----LG-- 156 (192)
T ss_dssp -THHHHHHTCCEEEEEEETTCGGGHHHH--HHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--
T ss_pred -HHHHHhccCCEEEEEEECCCHHHHHHH--HHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHH-----hC--
Confidence 111122467999999999744322221 1223222211 012389999999998754 222222221 10
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
........+. ....|+..+.++.++++.|.+.+
T Consensus 157 ~~~~~~~~~~---~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 157 LQHLRSRTWY---VQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp GGGCSSCCEE---EEECBTTTTBTHHHHHHHHHHHT
T ss_pred cccccCCceE---EEECcCCCcCCHHHHHHHHHHHH
Confidence 0001111111 13568888999999999876654
No 67
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.60 E-value=1.1e-14 Score=116.21 Aligned_cols=162 Identities=16% Similarity=0.125 Sum_probs=93.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|.+|+|||||+|.|++.......++.+ .....+.+ ++..+.++||||..... ..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~-----~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~ 78 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG-----FNVETLSY-KNLKLNVWDLGGQTSIR-----------PY 78 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTT-----CCEEEEEE-TTEEEEEEEEC----CC-----------TT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCc-----cceEEEEE-CCEEEEEEECCCCHhHH-----------HH
Confidence 345899999999999999999999655322222222 12223334 57888999999976432 12
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+..+|++++|+|+++..+-... ..++...... ....|+++|+||+|+... ...++.... +. ..
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~-----~~--~~ 147 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMSTA--SKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKE-----LN--LV 147 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHHHH--HHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHH-----TT--TT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHH--HHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHH-----hC--cc
Confidence 23345688999999998744333322 2223333211 122389999999998754 222222111 00 00
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
......+ .....|+..+.++.++++.+.+.+.
T Consensus 148 ~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 148 ELKDRSW---SIVASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp TCCSSCE---EEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred cccCCce---EEEEccCCCCcCHHHHHHHHHHHHH
Confidence 0011111 1125688889999999998877654
No 68
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.60 E-value=4.8e-15 Score=116.81 Aligned_cols=159 Identities=18% Similarity=0.122 Sum_probs=91.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++.... . ....+.........+.. ++ ..+.++||||..... ..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~~ 68 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFA-E-NKEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFA-----------SL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-T-TCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------GG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-C-CCCCccceeEEEEEEEE-CCEEEEEEEEECCCChhhh-----------hh
Confidence 379999999999999999999976531 1 11112222222233333 33 478899999954311 11
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcc--hhhHHHHhccCCCchHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH--EKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~--~~~l~~~~~~~~~~~~~~~~ 173 (363)
....+...|++++|+|+++..+..+ ..++..+....... .++++|+||+|+.... .....+. ...+.
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~v~~~~--------~~~~~ 138 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDXLQEGGERKVAREE--------GEKLA 138 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGSSCCCCSCHHH--------HHHHH
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCccccccccCCCHHH--------HHHHH
Confidence 1223357799999999873322222 22344444433223 3889999999986431 0111111 12233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
...+..++ ..|+..+.++.++++.+.+.
T Consensus 139 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1ek0_A 139 EEKGLLFF------ETSAKTGENVNDVFLGIGEK 166 (170)
T ss_dssp HHHTCEEE------ECCTTTCTTHHHHHHHHHTT
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHH
Confidence 33333333 45777888999999877543
No 69
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.60 E-value=1.8e-14 Score=116.96 Aligned_cols=167 Identities=17% Similarity=0.144 Sum_probs=96.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||++.|++... .. ....+..... ...+.. ++ ..+.++||||.... .
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~-~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~ 87 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQF-PE-VYVPTVFENY-IADIEV-DGKQVELALWDTAGQEDY-----------D 87 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSC-CS-SCCCSSCCCC-EEEEEE-TTEEEEEEEECCCCSGGG-----------T
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcC-Cc-ccCCcccceE-EEEEEE-CCEEEEEEEEECCCchhH-----------H
Confidence 4457999999999999999999997653 11 1111111111 112233 33 36789999995432 1
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc----CCC-c
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-K 167 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~----~~~-~ 167 (363)
......+...|++++|+|+++..+-.. ..++..+..... . .++++|+||+|+... ....+.+.. ... +
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 162 (201)
T 2gco_A 88 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRQD--EHTRRELAKMKQEPVRSE 162 (201)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGTTC--HHHHHHHHTTTCCCCCHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEecHHhhcC--ccchhhhcccccCcCCHH
Confidence 222334568899999999873222222 233444444322 2 389999999999865 222222211 000 1
Q ss_pred hHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+....+...++ ..|+..+.++.++++.|.+.+
T Consensus 163 ~~~~~~~~~~~~~~~-----~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 163 EGRDMANRISAFGYL-----ECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHHHHHTTCSEEE-----ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEE-----EeeCCCCCCHHHHHHHHHHHH
Confidence 123333443431222 567888899999999877654
No 70
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=1.7e-14 Score=116.99 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=94.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||++.|++... .. ....+.+.+.....+.+ ++ ..+.++||||... +...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~~ 91 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLF-PP-GQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRSI 91 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CT-TCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CC-CCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHH
Confidence 37999999999999999999986643 11 11112222333333334 44 4688999999532 2233
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+-.. ..++..+....... .++++|.||+|+........++ ...+...
T Consensus 92 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~~---------~~~~~~~ 160 (201)
T 2ew1_A 92 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAERREVSQQR---------AEEFSEA 160 (201)
T ss_dssp HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCSSCHHH---------HHHHHHH
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHHH---------HHHHHHH
Confidence 4455678899999999873322111 23444444443222 3889999999986431011111 1122223
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|++.+.++.++++.+...+
T Consensus 161 ~~~~~~------~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 161 QDMYYL------ETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp HTCCEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 333333 467888899999998876655
No 71
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.59 E-value=1.7e-14 Score=117.50 Aligned_cols=160 Identities=22% Similarity=0.197 Sum_probs=93.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|+|..|+|||||+|.|++... .. ....|+... ...+.+ ++ ..+.++||||..... .+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~--------~~ 78 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEF-VE---DYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA--------AI 78 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC-CT---TCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH--------HH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCC-CC---CCCCccceEEEEEEEE-CCEEEEEEEEcCCChhhhH--------HH
Confidence 3457999999999999999999997653 11 111122122 222333 44 368899999976521 11
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
.. ..+...|++++|+|+++.-+... ..++..+..... ....|+++|+||+|+........++ ...+
T Consensus 79 ~~---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~ 145 (206)
T 2bov_A 79 RD---NYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEE---------AKNR 145 (206)
T ss_dssp HH---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHH---------HHHH
T ss_pred HH---HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHH---------HHHH
Confidence 11 12235699999999873222111 233444444332 1123899999999987531111221 2223
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+..++ ..|+..+.++.++++.|...+
T Consensus 146 ~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 146 AEQWNVNYV------ETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp HHHHTCEEE------EECTTTCTTHHHHHHHHHHHH
T ss_pred HHHhCCeEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 333343333 457778889999998877665
No 72
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.59 E-value=2e-14 Score=115.92 Aligned_cols=161 Identities=14% Similarity=0.088 Sum_probs=93.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeC----------CcEEEEEeCCCCCCCCCChH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKD----------GQVVNVIDTPGLFDLSAGSE 87 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~----------~~~~~l~DtpG~~~~~~~~~ 87 (363)
..+|+|+|..|+|||||+|.|++... .. ....+...... ...+.... ...+.++||||...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------ 82 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKF-NS-KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER------ 82 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CC-SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-Cc-CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH------
Confidence 47999999999999999999997553 11 11111111111 12222211 24788999999643
Q ss_pred HHHHHHHHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCC
Q 017924 88 FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP 166 (363)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~ 166 (363)
+.......+..+|++++|+|+++..+... ..++..+..... ....++++|+||+|+........+ .
T Consensus 83 -----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~-~------ 149 (195)
T 3bc1_A 83 -----FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAVKEE-E------ 149 (195)
T ss_dssp -----GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCSCHH-H------
T ss_pred -----HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHH-H------
Confidence 22223344567899999999873322222 233444443322 012389999999998643101111 1
Q ss_pred chHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 167 KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...+....+..++ ..|+..+.++.++++.|...+
T Consensus 150 --~~~~~~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 150 --ARELAEKYGIPYF------ETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp --HHHHHHHHTCCEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred --HHHHHHHcCCCEE------EEECCCCCCHHHHHHHHHHHH
Confidence 2223333333333 457778889999998877665
No 73
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.59 E-value=4.4e-15 Score=118.11 Aligned_cols=160 Identities=18% Similarity=0.170 Sum_probs=93.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||+|.|++.... . ....+.........+.. ++ ..+.++||||..... ....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~-~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-------~~~~- 82 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFM-A-DCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFR-------AVTR- 82 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-S-SCTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTC-------HHHH-
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-C-CCCCccceEEEEEEEEE-CCeEEEEEEEECCCChHhh-------hhHH-
Confidence 3479999999999999999999976541 1 11122222222222333 33 467899999954321 1111
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
..+...|++++|+|+++..+... ..++..+....... .++++|+||+|+........++ ...+..
T Consensus 83 ---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 148 (179)
T 1z0f_A 83 ---SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQRDVTYEE---------AKQFAE 148 (179)
T ss_dssp ---HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred ---HHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHH---------HHHHHH
Confidence 22346799999999873322222 23344444443222 3899999999986431111111 223333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+..++ ..|+..+.++.++++.+.+.+
T Consensus 149 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 149 ENGLLFL------EASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp HTTCEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 3343333 457778899999998876654
No 74
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=3.3e-15 Score=120.33 Aligned_cols=161 Identities=17% Similarity=0.108 Sum_probs=93.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
.+|+|+|..|+|||||+|.|++........ .+.+.......+... ....+.++||||.. .+.....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~~~~ 90 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFV--STVGIDFKVKTVYRHEKRVKLQIWDTAGQE-----------RYRTITT 90 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCCCEE--EEETTTEEEEEEEETTTTEEEEEECHHHHH-----------HCHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcCCCCcccC--CCeeeEEEEEEEEECCEEEEEEEEeCCChH-----------HHHHHHH
Confidence 799999999999999999999765311100 111111222222221 35578999999932 2222333
Q ss_pred ccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
..+..+|++++|+|+++.-+.. ...++..+....... .++++|+||+|+........+ . ...+....+
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~~~ 159 (191)
T 3dz8_A 91 AYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDMEEERVVPTE-K--------GQLLAEQLG 159 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH-H--------HHHHHHHHT
T ss_pred HHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH-H--------HHHHHHHcC
Confidence 3445789999999987322211 123444444433222 389999999998643111111 1 222333334
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
..++ ..|++.+.++.++++.+.+.+..
T Consensus 160 ~~~~------~~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 160 FDFF------EASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp CEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 3333 46778889999999988776543
No 75
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.59 E-value=2.1e-14 Score=113.78 Aligned_cols=164 Identities=21% Similarity=0.179 Sum_probs=88.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||+|.|++..........+ .+ .....+.+ ++ ..+.++||||..... ...+.
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~-~~--~~~~~~~~-~~~~~~~~~~D~~g~~~~~------~~~~~ 71 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLG-ED--VYERTLTV-DGEDTTLVVVDTWEAEKLD------KSWSQ 71 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSS-SS--EEEEEEEE-TTEEEEEEEECCC-------------CHHH
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccc-cc--eeEEEEEE-CCEEEEEEEEecCCCCccc------hhhhH
Confidence 345799999999999999999999775421111111 12 12222333 33 367899999965420 01111
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
...+...|++++|+|+++..+-.. ..++..+..... ....|+++|.||+|+........++ ...+.
T Consensus 72 ---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~ 138 (175)
T 2nzj_A 72 ---ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEE---------GRACA 138 (175)
T ss_dssp ---HHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHH
T ss_pred ---HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHH---------HHHHH
Confidence 223456799999999873322222 123333333211 1123899999999987531111111 11222
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
...+..++ ..|++.+.++.++++.|.+.+.
T Consensus 139 ~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 139 VVFDCKFI------ETSATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp HHHTSEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EEecCCCCCHHHHHHHHHHHHH
Confidence 22232333 5678888999999998776553
No 76
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=121.92 Aligned_cols=167 Identities=16% Similarity=0.098 Sum_probs=89.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||+|.|++... .. ....+.........+.+ ++ ..+.++||||.... .....
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-------~~~~~ 95 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEF-RE-NISATLGVDFQMKTLIV-DGERTVLQLWDTAGQERF-------RSIAK 95 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCC-C-----------CEEEEEEE-TTEEEEEEEEECTTCTTC-------HHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCC-Cc-cCCCCccceeEEEEEEE-CCEEEEEEEEECCCCcch-------hhhHH
Confidence 3457999999999999999999987653 11 11111111122222333 33 46889999996542 11111
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
. .+..+|++++|+|+++..+... ..++..+....... .|+++|+||+|+... ...+. ...........+.
T Consensus 96 ~----~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~--~~~~~-~~~v~~~~~~~~~ 166 (199)
T 2p5s_A 96 S----YFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIRDT--AATEG-QKCVPGHFGEKLA 166 (199)
T ss_dssp H----HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHH--HHHTT-CCCCCHHHHHHHH
T ss_pred H----HHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccc--ccccc-ccccCHHHHHHHH
Confidence 1 2235699999999873322222 23344444433222 389999999998632 10000 0000000122233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...+..++ ..|++.+.++.++++.|.+.+
T Consensus 167 ~~~~~~~~------~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 167 MTYGALFC------ETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp HHHTCEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCeEE------EeeCCCCCCHHHHHHHHHHHH
Confidence 33343333 467788899999998877654
No 77
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.59 E-value=1.1e-14 Score=116.04 Aligned_cols=158 Identities=16% Similarity=0.074 Sum_probs=92.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|+|..|+|||||+|.|++.......++.+ . ....+.+ ++..+.++||||.... ....
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~-~----~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~ 82 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG-S----NVEEIVI-NNTRFLMWDIGGQESL-----------RSSW 82 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSS-S----SCEEEEE-TTEEEEEEEESSSGGG-----------TCGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCc-e----eeEEEEE-CCEEEEEEECCCCHhH-----------HHHH
Confidence 45799999999999999999999765411112222 1 1223334 6788999999997542 1122
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..+|++++|+|+++..+-... ..+..+..... ....++++|+||+|+... ...+++... +. ....
T Consensus 83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~--~~~~ 152 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQF-----LK--LTSI 152 (181)
T ss_dssp GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGGC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcccC--CCHHHHHHH-----hC--cccc
Confidence 3445678999999999855443332 22333322110 122389999999998754 222222111 00 0000
Q ss_pred C-CceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 177 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
. ..+. ....|++.+.++.++++.|.+
T Consensus 153 ~~~~~~----~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 153 KDHQWH----IQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp CSSCEE----EEECBTTTTBTHHHHHHHHHT
T ss_pred cCCceE----EEEccCCCCcCHHHHHHHHHh
Confidence 1 1111 125678888999999887653
No 78
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.59 E-value=1.5e-14 Score=115.88 Aligned_cols=160 Identities=22% Similarity=0.194 Sum_probs=93.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||+|.|++... . .....++.... ..+.. ++ ..+.++||||.... ..+.
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~---~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~--------~~~~ 83 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF-V---EDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY--------AAIR 83 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-C---CSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC--------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-C---CcCCCccceEEEEEEEE-CCEEEEEEEEECCCCccc--------HHHH
Confidence 457999999999999999999997653 1 11111222222 22233 43 36889999996642 1111
Q ss_pred HHHhccCCCccEEEEEeecCCCCCH-HHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
.. .+...|++++|+|+++..+. ....++..+...... ...|+++|+||+|+........++ ...+.
T Consensus 84 ~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 150 (187)
T 2a9k_A 84 DN---YFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE---------AKNRA 150 (187)
T ss_dssp HH---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred HH---HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCHHH---------HHHHH
Confidence 11 22356999999998733221 122334444444321 123899999999986431111111 22233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
...+..++ ..|+..+.++.++++.|.+.+.
T Consensus 151 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 151 EQWNVNYV------ETSAKTRANVDKVFFDLMREIR 180 (187)
T ss_dssp HHTTCEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EeCCCCCCCHHHHHHHHHHHHH
Confidence 33343333 4577788899999998877653
No 79
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.59 E-value=2.6e-14 Score=130.68 Aligned_cols=165 Identities=18% Similarity=0.230 Sum_probs=106.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccc-----cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFK-----ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
..+|+++|+.|+|||||+++|+|..... ......+.|+...+..+.+ ++..++++||||.. .+
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~-----------~~ 86 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA-----------DL 86 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH-----------HH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChH-----------HH
Confidence 4799999999999999999999876100 0011223455555555555 67899999999942 33
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
...+......+|++++|+|+++.........+..+.. .+- +.++++||+|+... ..++..... +..++
T Consensus 87 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~i----p~IvviNK~Dl~~~--~~~~~~~~~-----l~~~l 154 (482)
T 1wb1_A 87 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FNI----PIIVVITKSDNAGT--EEIKRTEMI-----MKSIL 154 (482)
T ss_dssp HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CBCEEEECTTSSCH--HHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cCC----CEEEEEECCCcccc--hhHHHHHHH-----HHHHH
Confidence 4444445567899999999986666666666665544 332 67999999999864 445544444 55555
Q ss_pred Hhc-CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 174 QLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 174 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
... +... ......|+..+.++.+|++.|...+..
T Consensus 155 ~~~~~~~~---~~ii~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 155 QSTHNLKN---SSIIPISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp HHSSSGGG---CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhhccccc---ceEEEEECcCCCCHHHHHHHHHHhhcC
Confidence 443 1100 012256788889999999999887653
No 80
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=1.2e-14 Score=117.87 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=92.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE-EEeeC--CcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||+|.|++... .. . ...+....... ... + ...+.++||||..... .+.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~-~--~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~--------~~~ 73 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTF-RD-T--YIPTIEDTYRQVISC-DKSVCTLQITDTTGSHQFP--------AMQ 73 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCC-CC-T--TSCCCCEEEEEEEEE-TTEEEEEEEEECCGGGSCH--------HHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCC-CC-c--ccCccccceeEEEEE-CCEEEEEEEEeCCChHHhH--------HHH
Confidence 458999999999999999999997543 11 1 11121111111 222 3 2467899999965421 111
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
.. .+...|++++|+|+++..+... ..++..+....+.....|+++|+||+|+... ....+. ...+.
T Consensus 74 ~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~~~ 140 (199)
T 2gf0_A 74 RL---SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR--EVDTRE--------AQAVA 140 (199)
T ss_dssp HH---HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC--SSCHHH--------HHHHH
T ss_pred HH---hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc--ccCHHH--------HHHHH
Confidence 11 2234699999999873222121 2234444444322122389999999998753 211111 12222
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
...+..++ ..|+..+.++.++++.|...+..
T Consensus 141 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 141 QEWKCAFM------ETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp HHHTCEEE------ECBTTTTBSHHHHHHHHHHHCSS
T ss_pred HHhCCeEE------EEecCCCCCHHHHHHHHHHHHhh
Confidence 33333333 46778889999999988776543
No 81
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.59 E-value=2.2e-14 Score=115.95 Aligned_cols=169 Identities=14% Similarity=0.110 Sum_probs=91.8
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEe--eCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
.....+|+|+|..|+|||||++.|++... ...+.+... ........+ .....+.++||+|........+..
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~---- 89 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMS--PNETLFLES-TNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY---- 89 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCC--GGGGGGCCC-CCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH----
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCC--Ccceeeecc-ccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc----
Confidence 34568999999999999999999988643 112111111 111111111 134678899999976532111000
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcch--hhHHHHhccCCCchHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE--KTLEDFLGHECPKPLKE 171 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~--~~l~~~~~~~~~~~~~~ 171 (363)
...+.++|++++|+|+++++......+..++..........++++|.||+|+...+. .....+... ....
T Consensus 90 ----~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~----~~~~ 161 (196)
T 3llu_A 90 ----EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQR----ANDD 161 (196)
T ss_dssp ----HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHH----HHHH
T ss_pred ----ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHH----HHHH
Confidence 112236799999999985533333444455554421111238999999999876410 001111111 0122
Q ss_pred HHH----hcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 172 ILQ----LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 172 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
+.. ..+..+ ..+|++. .++.++++.+.+
T Consensus 162 ~~~~~~~~~~~~~------~e~Sa~~-~~v~~~f~~l~~ 193 (196)
T 3llu_A 162 LADAGLEKLHLSF------YLTSIYD-HSIFEAFSKVVQ 193 (196)
T ss_dssp HHHTTCTTSCEEE------EEECTTS-THHHHHHHHHHH
T ss_pred HHHhhhhcCCcce------EEEEech-hhHHHHHHHHHH
Confidence 222 112122 2567888 899998887654
No 82
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.59 E-value=1.9e-14 Score=115.54 Aligned_cols=163 Identities=14% Similarity=0.108 Sum_probs=97.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|..|+|||||+|.|++.......+ |.......+.+ ++..+.++||||...... .
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~-----------~ 82 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVP-----TVGVNLETLQY-KNISFEVWDLGGQTGVRP-----------Y 82 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECS-----STTCCEEEEEE-TTEEEEEEEECCSSSSCC-----------C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCC-----CCceEEEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence 345899999999999999999998665321112 22222233344 678899999999765321 1
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+..+|++++|+|+++.-+-... ..++...... ....|+++|+||+|+... ...+++... +. ..
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~ 151 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVA--KHELYALLDEDELRKSLLLIFANKQDLPDA--ASEAEIAEQ-----LG--VS 151 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHH--HHHHHHHHTCSTTTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GG
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHH--HHHHHHHHhhhhcCCCeEEEEEECCCCcCC--CCHHHHHHH-----hC--hh
Confidence 22345688999999999844333222 1222222221 012389999999998754 222222221 00 00
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
......+ .....|+..+.++.++++.+.+.+..
T Consensus 152 ~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 152 SIMNRTW---TIVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp GCCSSCE---EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hccCCce---EEEEccCCCccCHHHHHHHHHHHHHh
Confidence 1111111 11256788889999999988877654
No 83
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.59 E-value=2.2e-14 Score=112.45 Aligned_cols=156 Identities=19% Similarity=0.188 Sum_probs=90.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+|+|+|..|+|||||+|.|++... . .....+.... ...+.. ++ ..+.++||||..... .+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~-~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~--------~~~~~ 70 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF-V---DECDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS--------AMRDQ 70 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-C---SCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCC--------HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-c---cccCCccceEEEEEEEE-CCEEEEEEEEECCCchhhh--------HHHHH
Confidence 6899999999999999999987653 1 1111122122 222233 33 357899999976531 11111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.....|++++|+++++..+... ..++..+...... ...|+++|+||+|+... ....+. ...+...
T Consensus 71 ---~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~--~~~~~~--------~~~~~~~ 136 (166)
T 2ce2_X 71 ---YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAAR--TVESRQ--------AQDLARS 136 (166)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCC--CSCHHH--------HHHHHHH
T ss_pred ---hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhc--ccCHHH--------HHHHHHH
Confidence 1224689999999873322122 2334444443321 12389999999998753 211111 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|+..+.++.++++.+.+.+
T Consensus 137 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 137 YGIPYI------ETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp HTCCEE------EECTTTCTTHHHHHHHHHHHH
T ss_pred cCCeEE------EecCCCCCCHHHHHHHHHHHH
Confidence 333333 457778889999999887665
No 84
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.59 E-value=1.9e-14 Score=117.42 Aligned_cols=163 Identities=15% Similarity=0.059 Sum_probs=94.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
...+|+|+|..|+|||||+|.|++.... . ....+.+.+.....+...+ ...+.++||||..... ..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~~ 73 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS-N-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQ-----------SL 73 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-S-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGS-----------CS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-C-CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH-----------Hh
Confidence 4579999999999999999999976531 1 1222222333333333311 2478899999964321 11
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
....+...|++++|+|+++..+... ..++..+...... ....|+++|+||+|+... ....+. ...+.
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~~~ 143 (207)
T 1vg8_A 74 GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKR--------AQAWC 143 (207)
T ss_dssp CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHH--------HHHHH
T ss_pred HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc--ccCHHH--------HHHHH
Confidence 2234467899999999873322211 2233444443321 012389999999998743 211111 12222
Q ss_pred H-hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 174 Q-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 174 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
. ..+..++ ..|+..+.++.++++.|.+.+.
T Consensus 144 ~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 144 YSKNNIPYF------ETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp HHTTSCCEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HhcCCceEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2 1122222 5678888999999998776653
No 85
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.59 E-value=2.4e-14 Score=114.18 Aligned_cols=161 Identities=17% Similarity=0.156 Sum_probs=93.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|.+|+|||||++.|++.......++.+ .....+.+ ++..+.++||+|.... ...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g-----~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~ 76 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG-----FNIKSVQS-QGFKLNVWDIGGQRKI-----------RPY 76 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT-----EEEEEEEE-TTEEEEEEECSSCGGG-----------HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC-----eEEEEEEE-CCEEEEEEECCCCHHH-----------HHH
Confidence 456899999999999999999999774311112222 12223344 5778899999996431 112
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc--ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+..+|++++|+|+++.-+-... ..++...+.. ....|+++|.||+|+... ...++.... +. +.
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~~--~~ 145 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEET--GQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIAEG-----LN--LH 145 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHHH--HHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT--GG
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHH--HHHHHHHHhChhhcCCCEEEEEECcCcccC--CCHHHHHHH-----hC--ch
Confidence 22334578999999998743332221 1222222211 112389999999998754 222222111 00 00
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
......+. ...+|+..+.++.++++.+...+
T Consensus 146 ~~~~~~~~---~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 146 TIRDRVWQ---IQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp GCCSSCEE---EEECCTTTCTTHHHHHHHHHHTC
T ss_pred hccCCceE---EEEccCCCCCCHHHHHHHHHHHH
Confidence 01111111 13568888999999999876544
No 86
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.59 E-value=1.4e-13 Score=121.55 Aligned_cols=166 Identities=16% Similarity=0.102 Sum_probs=102.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH-HHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~ 96 (363)
...+|+|+|.+|+|||||+|.|+|.... ..... ..|....+..+.. .+..+.++||||+.+...... .+... .
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~-~~~~~-~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~---~ 239 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPE-IASYP-FTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIEKQ---A 239 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCE-EECCT-TCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHHHH---H
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCC-CeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHHHH---H
Confidence 4579999999999999999999987631 11111 2233344444444 567889999999866432211 11111 1
Q ss_pred HhccCCCccEEEEEeecCCCC--CHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRF--SQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~--~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
+.......|++++|+|+++.. +..+ ..++..+...++ ..++++|+||+|.... ..+++. ...+
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~--~~~~~~---------~~~~ 305 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADE--ENIKRL---------EKFV 305 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCH--HHHHHH---------HHHH
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCCh--HHHHHH---------HHHH
Confidence 112234579999999987332 4333 455666666553 2389999999998755 333222 1222
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
...+..+ ...|+..+.++.+|++.+.+.+.
T Consensus 306 ~~~~~~~------~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 306 KEKGLNP------IKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp HHTTCCC------EECBTTTTBTHHHHHHHHHHHHH
T ss_pred HhcCCCe------EEEeCCCCcCHHHHHHHHHHHHH
Confidence 2222222 35678889999999998877653
No 87
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=2.2e-14 Score=117.05 Aligned_cols=166 Identities=18% Similarity=0.129 Sum_probs=95.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||+|.|++... .. . ...|+...+ ..+.. ++ ..+.++||||.....
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~-~--~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~----------- 87 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEF-PE-V--YVPTVFENYVADIEV-DGKQVELALWDTAGQEDYD----------- 87 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC-C----------CCEEEEEEEE-TTEEEEEEEEECTTCTTCT-----------
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCC-CC-c--CCCcccceEEEEEEE-CCEEEEEEEEECCCcHHHH-----------
Confidence 347999999999999999999997653 11 1 111211111 22233 43 467899999976532
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc----CCC-c
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-K 167 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~----~~~-~ 167 (363)
......+...|++++|+|+++..+-.. ..++..+..... . .|+++|+||+|+... ....+.+.. ... .
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 162 (207)
T 2fv8_A 88 RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-N--VPIILVANKKDLRSD--EHVRTELARMKQEPVRTD 162 (207)
T ss_dssp TTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHH
T ss_pred HHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhhhcc--ccchhhhhhcccCCCCHH
Confidence 122234567899999999873222122 234444444322 2 389999999998755 322222211 000 0
Q ss_pred hHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
....+....+...+ ...|++.+.++.++++.|.+.+.
T Consensus 163 ~~~~~~~~~~~~~~-----~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 163 DGRAMAVRIQAYDY-----LECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp HHHHHHHHTTCSEE-----EECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEE-----EEeeCCCCCCHHHHHHHHHHHHH
Confidence 12223333333122 25678888999999998877653
No 88
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=5e-15 Score=119.34 Aligned_cols=161 Identities=22% Similarity=0.161 Sum_probs=93.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
...+|+|+|..|+|||||+|.|++.... .... .+.........+... ....+.++||||..... ..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~ 88 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFD-HNIS-PTIGASFMTKTVPCGNELHKFLIWDTAGQERFH-----------SL 88 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCC-TTCC-CCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG-----------GG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCC-CCcC-CCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH-----------hh
Confidence 3479999999999999999999976531 1111 111111122222221 24578899999954321 11
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...|++++|+|+++..+... ..++..+....... .++++|+||+|+........++ ...+...
T Consensus 89 ~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~v~~~~---------~~~~~~~ 157 (192)
T 2fg5_A 89 APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLSDIREVPLKD---------AKEYAES 157 (192)
T ss_dssp THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHHT
T ss_pred hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHHH---------HHHHHHH
Confidence 1223356799999999874332222 23444444433222 3899999999986421011111 2233333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|++.+.++.++++.|.+.+
T Consensus 158 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 158 IGAIVV------ETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp TTCEEE------ECBTTTTBSHHHHHHHHHHTC
T ss_pred cCCEEE------EEeCCCCcCHHHHHHHHHHHH
Confidence 343333 467788899999999877654
No 89
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.58 E-value=2.2e-14 Score=116.41 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=93.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||++.|++... .. ....+.........+.+ ++ ..+.++||||.... ...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 94 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAF-SE-RQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERF-----------RTI 94 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGGG-----------HHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCC-CC-CCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhH-----------HHH
Confidence 37999999999999999999986653 11 11111112222233333 44 47889999996431 112
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+-.. ..++..+....... .++++|.||+|+........++ ...+...
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~~---------~~~~~~~ 163 (201)
T 2hup_A 95 TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN--IVQLLIGNKSDLSELREVSLAE---------AQSLAEH 163 (201)
T ss_dssp HHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCccccccccCHHH---------HHHHHHH
Confidence 2233457899999999873222111 23444444433222 3899999999986431011111 2233344
Q ss_pred cCC-ceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 CDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 ~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
.+. .++ ..|++.+.++.++++.|...+..
T Consensus 164 ~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 164 YDILCAI------ETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp TTCSEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 343 333 56778889999999988776643
No 90
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=1.5e-14 Score=114.10 Aligned_cols=159 Identities=18% Similarity=0.196 Sum_probs=89.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE-EEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
..+|+|+|..|+|||||+|.|++...... . ..+....... ... ++ ..+.++||||..... .+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-~---~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~--------~~~~ 69 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRES-Y---IPTVEDTYRQVISC-DKSICTLQITDTTGSHQFP--------AMQR 69 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSS-C---CCCSCEEEEEEEEE-TTEEEEEEEEECCSCSSCH--------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-C---CCCccccEEEEEEE-CCEEEEEEEEECCCchhhH--------HHHH
Confidence 47999999999999999999997643111 1 1111111111 222 32 467899999976521 1111
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
. .+...|++++|+|+++..+... ..++..+....+.....|+++|+||+|+... ..+... ....+..
T Consensus 70 ~---~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~--~~v~~~-------~~~~~~~ 137 (172)
T 2erx_A 70 L---SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS--REVQSS-------EAEALAR 137 (172)
T ss_dssp H---HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG--CCSCHH-------HHHHHHH
T ss_pred H---hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc--cccCHH-------HHHHHHH
Confidence 1 1234699999999873322221 2344444444321112389999999998643 111100 0112222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+..++ ..|+..+.++.++++.+.+.+
T Consensus 138 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 138 TWKCAFM------ETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp HHTCEEE------ECBTTTTBSHHHHHHHHHHTC
T ss_pred HhCCeEE------EecCCCCcCHHHHHHHHHHHH
Confidence 3333333 467788899999999877654
No 91
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.58 E-value=5e-15 Score=119.44 Aligned_cols=160 Identities=19% Similarity=0.134 Sum_probs=91.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..+|+|+|..|+|||||+|.|++..... ....+.........+... ....+.++||||...... + .
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~---~ 91 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSH--DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA--------I---T 91 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCS--SCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT--------T---H
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh--------h---h
Confidence 4799999999999999999999765411 111222222222222221 235678999999765321 1 1
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...|++++|+|+++..+... ..++..+...... ..++++|+||+|+........+ . ...+....
T Consensus 92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~~ 160 (193)
T 2oil_A 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA--TIVVMLVGNKSDLSQAREVPTE-E--------ARMFAENN 160 (193)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCT--TCEEEEEEECGGGGGGCCSCHH-H--------HHHHHHHT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECCCcccccccCHH-H--------HHHHHHHc
Confidence 112346799999999873222111 2233333332222 2389999999998653101111 1 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++ ..|+..+.++.++++.|.+.+
T Consensus 161 ~~~~~------~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 161 GLLFL------ETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp TCEEE------EECTTTCTTHHHHHHHHHHHH
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 33333 457778889999998877655
No 92
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.58 E-value=2.8e-14 Score=114.24 Aligned_cols=164 Identities=15% Similarity=0.053 Sum_probs=95.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||++.|++... .. ....|+... ...+.. ++ ..+.++||||.... .
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~ 67 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAF-PG---EYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDY-----------D 67 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSC-CS---SCCCCSCCEEEEEEEE-TTEEEEEEEECCCCSGGG-----------T
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCC-CC---CcCCcccceeEEEEEE-CCEEEEEEEEECCCCHhH-----------H
Confidence 347999999999999999999986543 11 111122111 112223 33 35669999997542 1
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc----CCC-c
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-K 167 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~----~~~-~ 167 (363)
......+...|++++|+|+++..+..+. .++..+..... ..|+++|+||+|+... ....+.+.. ... .
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 142 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP 142 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHH
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc--chhhhhhcccccccCCHH
Confidence 2223345688999999998733222222 24444444332 2389999999998754 222111110 000 1
Q ss_pred hHHHHHHhcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 168 PLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+....+. .++ ..|+..+.++.++++.+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 143 QGLAMAKEIGAVKYL------ECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp HHHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcEEE------EecCCCccCHHHHHHHHHHHH
Confidence 12233333333 222 567888899999999887765
No 93
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.58 E-value=7.5e-15 Score=117.32 Aligned_cols=159 Identities=15% Similarity=0.148 Sum_probs=73.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||++.|++... .... ..+.+.+.....+.+ ++ ..+.++||||... +...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~-~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~~ 73 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAF-NSTF-ISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER-----------FRTI 73 (183)
T ss_dssp EEEEEEECCCCC-----------------CH-HHHHCEEEEEEEEEE-TTEEEEEEEEEC--------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCCC-CCcccceeEEEEEEE-CCEEEEEEEEcCCCChh-----------hhhh
Confidence 47999999999999999999986542 1100 011122222223333 44 5788999999543 2223
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+-.. ..++..+....... .++++|.||+|+........++ ...+...
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~~ 142 (183)
T 2fu5_C 74 TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKRQVSKER---------GEKLALD 142 (183)
T ss_dssp CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCCCSCHHH---------HHHHHHH
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccCCccCcCCHHH---------HHHHHHH
Confidence 3445568899999999873322122 22334444432222 3899999999987531011111 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|+..+.++.++++.+...+
T Consensus 143 ~~~~~~------~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 143 YGIKFM------ETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp HTCEEE------ECCC---CCHHHHHHHHHHHH
T ss_pred cCCeEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 343333 457778889999998876655
No 94
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.58 E-value=1.7e-14 Score=113.28 Aligned_cols=160 Identities=18% Similarity=0.149 Sum_probs=90.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++... . .....|+..... .+... ....+.++||||...... +...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~-~---~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~ 70 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF-V---EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA--------MRDL 70 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC-C---CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT--------HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-C---CCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH--------HHHH
Confidence 37999999999999999999987543 1 111122222222 22221 234678999999765321 1111
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.+...|++++|+|+++..+-.. ..++..+...... ...|+++|+||+|+........+ . ...+...
T Consensus 71 ---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~ 137 (167)
T 1c1y_A 71 ---YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVGKE-Q--------GQNLARQ 137 (167)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSCHH-H--------HHHHHHH
T ss_pred ---HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECccccccccCCHH-H--------HHHHHHH
Confidence 1224699999999873322112 2334444443321 12389999999998643101111 1 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+...++ ..|+..+.++.++++.+.+.+
T Consensus 138 ~~~~~~~-----~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 138 WCNCAFL-----ESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTSCEEE-----ECBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCcEE-----EecCCCCCCHHHHHHHHHHHH
Confidence 3222222 567888899999999876654
No 95
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.58 E-value=4e-15 Score=129.75 Aligned_cols=161 Identities=11% Similarity=0.031 Sum_probs=92.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|+|..|+|||||++.|++... .. . . .|+......+.. .+..+.|+||||..... ...
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~-~~-~--~-pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~~ 226 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEI-VT-T--I-PTIGFNVETVEY-KNISFTVWDVGGQDKIR-----------PLW 226 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCC-EE-E--E-EETTEEEEEEEE-TTEEEEEEECC-----C-----------CSH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCC-CC-c--c-cccceEEEEEec-CcEEEEEEECCCCHhHH-----------HHH
Confidence 346999999999999999999987663 11 1 1 133334444444 67889999999954321 112
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...|++++|+|+++.-+-... ..+..+..... ....|++||+||+|+... ...+++... +......
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~--~~~~~i~~~-----~~~~~~~- 297 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNA--MNAAEITDK-----LGLHSLR- 297 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----HTCTTCC-
T ss_pred HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc-cCCCeEEEEEECccCCcc--cCHHHHHHH-----hchhhhh-
Confidence 2233578999999999744443222 12222211111 012389999999998765 333322222 1000000
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...+. ...+|++.+.++.++++.|...+
T Consensus 298 ~~~~~----~~~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 298 HRNWY----IQATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp SSCEE----EEECBTTTTBTHHHHHHHHHHHH
T ss_pred cCCCE----EEEEECCCCcCHHHHHHHHHHHH
Confidence 01111 12568888999999999887765
No 96
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=4.3e-14 Score=114.01 Aligned_cols=164 Identities=17% Similarity=0.082 Sum_probs=95.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||++.|++... .. ....|+... ...+.. ++ ..+.++||||.....
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~----------- 80 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF-PE---EYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYD----------- 80 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC-CC---SCCCSSCCCEEEEEES-SSCEEEEEEECCCCSSSST-----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CC---CCCCcccceeEEEEEE-CCEEEEEEEEECCCCcchh-----------
Confidence 347999999999999999999997642 11 111122111 122223 33 567899999976532
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc----CC-Cc
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PK 167 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~----~~-~~ 167 (363)
......+...|++++|+|+++..+-... .++..+..... . .|+++|.||+|+... ....+.+.. .. .+
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 155 (194)
T 2atx_A 81 RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-N--VPFLLIGTQIDLRDD--PKTLARLNDMKEKPICVE 155 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECTTSTTC--HHHHHHHTTTTCCCCCHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccc--ccchhhcccccCcccCHH
Confidence 1223345678999999998733222222 34445554432 2 389999999999764 222111110 00 01
Q ss_pred hHHHHHHhcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 168 PLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+....+. .++ ..|++.+.++.++++.+...+
T Consensus 156 ~~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 156 QGQKLAKEIGACCYV------ECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHHHHHTCSCEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEE------EeeCCCCCCHHHHHHHHHHHH
Confidence 12233333333 232 567888899999998876654
No 97
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.58 E-value=1.5e-14 Score=115.16 Aligned_cols=162 Identities=17% Similarity=0.145 Sum_probs=93.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|+|..|+|||||+|.|++... ......|+...+ ..+.. ++ ..+.++||||....... ...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~----~~~- 76 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYF----VSDYDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAM----REQ- 76 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSC----CSSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCC----HHH-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcC----ccccCCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHH----HHH-
Confidence 3457999999999999999999997743 111222322222 22333 43 46789999997653211 111
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
.+...|++++|+|+++..+... ..++..+..... ....++++|+||+|+........+ . ...+
T Consensus 77 ------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~-~--------~~~~ 140 (181)
T 2fn4_A 77 ------YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLESQRQVPRS-E--------ASAF 140 (181)
T ss_dssp ------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGGGCCSCHH-H--------HHHH
T ss_pred ------HHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHH-H--------HHHH
Confidence 1124689999999873222121 223333322221 112389999999998653101111 1 1222
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
....+..++ ..|+..+.++.++++.|...+..
T Consensus 141 ~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 141 GASHHVAYF------EASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp HHHTTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHcCCeEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence 233333333 45777889999999988776643
No 98
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.58 E-value=2.2e-14 Score=115.23 Aligned_cols=161 Identities=12% Similarity=0.095 Sum_probs=90.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH-
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV- 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~- 94 (363)
...+|+|+|..|+|||||+|.|++.... . ....+.+.+.....+.. ++ ..+.++||||... +.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~-~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~ 84 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFP-D-RTEATIGVDFRERAVDI-DGERIKIQLWDTAGQER-----------FRK 84 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-S-SCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHH-----------HHT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCC-C-CCCCCcceEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhh
Confidence 3479999999999999999999866531 1 11122222223333333 33 4788999999432 11
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
......+..+|++++|+|+++..+-. ...++..+...+. ....++++|+||+|+........+ . ...+.
T Consensus 85 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~-~--------~~~~~ 154 (189)
T 1z06_A 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTD-L--------AQKFA 154 (189)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHH-H--------HHHHH
T ss_pred hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHH-H--------HHHHH
Confidence 11222345789999999987322211 1234444444431 112389999999998643101111 1 22233
Q ss_pred HhcCCceEEecCCCcccccch---hHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGT---EQVRQLLSLVNSVI 208 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~ 208 (363)
...+..++ ..|++.+ .++.++++.|.+.+
T Consensus 155 ~~~~~~~~------~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 155 DTHSMPLF------ETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp HHTTCCEE------ECCSSSGGGGSCHHHHHHHHC---
T ss_pred HHcCCEEE------EEeCCcCCcccCHHHHHHHHHHHH
Confidence 33333333 4566677 78888888765543
No 99
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.58 E-value=1.4e-14 Score=117.48 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=90.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||+|.|++.... . ....+.+.......+.. ++ ..+.++||||... +..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~-~-~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~ 89 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFK-Q-DSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQER-----------FRS 89 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHH-----------HSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-c-cCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHh-----------HHH
Confidence 3479999999999999999999976531 1 11112222222233333 43 5788999999422 211
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.....+..+|++++|+|+++..+... ..++..+....... .++++|+||+|+........++ ...+..
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~ 158 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLE---------ASRFAQ 158 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccccccCHHH---------HHHHHH
Confidence 12233457899999999873322111 22333344333222 3899999999986431111111 222333
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+..++ ..|+..+.++.++++.|.+.+
T Consensus 159 ~~~~~~~------~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 159 ENELMFL------ETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp HTTCEEE------EECTTTCTTHHHHHHHHHHHH
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 3333333 457788899999999877655
No 100
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.58 E-value=4.8e-14 Score=112.70 Aligned_cols=160 Identities=18% Similarity=0.126 Sum_probs=91.8
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
+....+|+|+|..|+|||||++.+++... .... ..|.......+.+ ++ ..+.++||+|.... .
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~-~~~~---~~t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~--------~-- 81 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTY-VQEE---SPEGGRFKKEIVV-DGQSYLLLIRDEGGPPEL--------Q-- 81 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSC-CCCC---CTTCEEEEEEEEE-TTEEEEEEEEECSSSCCH--------H--
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCC-CCCc---CCCcceEEEEEEE-CCEEEEEEEEECCCChhh--------h--
Confidence 34568999999999999999999886543 1111 1122222223333 44 35677999997541 1
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
.+...|++++|+|+++.-+-.. ..++..+..... ....++++|.||+|+.......+. .+....+
T Consensus 82 ------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v~-------~~~~~~~ 147 (184)
T 3ihw_A 82 ------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVID-------DSRARKL 147 (184)
T ss_dssp ------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCSC-------HHHHHHH
T ss_pred ------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccccC-------HHHHHHH
Confidence 1224699999999984332222 223333333211 122389999999998522001000 0012233
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
....+...++ ..|++.+.++.++++.+...+.
T Consensus 148 ~~~~~~~~~~-----e~Sa~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 148 STDLKRCTYY-----ETCATYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp HHHTTTCEEE-----EEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHcCCCeEE-----EecCCCCCCHHHHHHHHHHHHH
Confidence 4444322222 5678888999999998776654
No 101
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.58 E-value=5e-15 Score=116.70 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=91.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..+|+|+|..|+|||||+|.|++.... . ....+.........+... ....+.++||||.... ....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----------~~~~ 72 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFH-E-FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY-----------HSLA 72 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-T-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------GGGH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCC-C-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh-----------hhhh
Confidence 479999999999999999999965431 1 111222222222233331 1457889999996431 1111
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..+|++++|+|+++..+-.. ..++..+....... .++++|.||+|+........++ ...+....
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 141 (170)
T 1r2q_A 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANKRAVDFQE---------AQSYADDN 141 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHHHT
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccccccCHHH---------HHHHHHHc
Confidence 223356899999999873322222 22334444433322 3788889999986431011111 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+..++ ..|+..+.++.++++.|.+.+
T Consensus 142 ~~~~~------~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 142 SLLFM------ETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp TCEEE------ECCTTTCTTHHHHHHHHHHTS
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 33333 467788899999998876543
No 102
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.1e-14 Score=120.18 Aligned_cols=160 Identities=18% Similarity=0.127 Sum_probs=91.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||++.|++.... . ....+.+.......+.+ ++ ..+.++||||..... ..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~-~-~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~ 78 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFN-M-DSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYR-----------AI 78 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCC-C-------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTT-----------CC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCC-C-CCCCcccceeEEEEEEE-CCEEEEEEEEECCCccchh-----------hh
Confidence 379999999999999999999976531 1 11112222222233333 44 478899999965422 12
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+... ..++..+....... .+++||+||+|+........++ ...+...
T Consensus 79 ~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~~ 147 (223)
T 3cpj_B 79 TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLAHLRAVPTEE---------SKTFAQE 147 (223)
T ss_dssp CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCHHH---------HHHHHHH
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccccCHHH---------HHHHHHH
Confidence 2334567899999999873332222 22344444433222 3899999999986431011111 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.+..++ ..|+..+.++.++++.|...+.
T Consensus 148 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 148 NQLLFT------ETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp TTCEEE------ECCCC-CCCHHHHHHHHHHHHT
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 333333 4577788899999998877653
No 103
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.57 E-value=1.3e-14 Score=116.64 Aligned_cols=166 Identities=10% Similarity=0.005 Sum_probs=92.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
.+..+|+|+|.+|+|||||++.|++...-. ...|.......+.+ ++..+.++||||..... ..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~ 83 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSEELAI-GNIKFTTFDLGGHIQAR-----------RL 83 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-----CCCCCSCEEEEEEE-TTEEEEEEECCCSGGGT-----------TS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-----cccCCCCCeEEEEE-CCEEEEEEECCCCHHHH-----------HH
Confidence 445799999999999999999999765311 11122223334444 67889999999975421 12
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCc-chhhHHHHhccCCCchHHHHHH
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~-~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
....+..+|++++|+|+++.-+-.. ...+..+..... ....|+++|.||+|+... ..+.+.+++.... ..-...+.
T Consensus 84 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~ 161 (190)
T 1m2o_B 84 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE-LKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQRIE 161 (190)
T ss_dssp GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-CCC---CC
T ss_pred HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchh-hcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-cccccccc
Confidence 2334568899999999984433222 222333222111 112389999999998753 1122222222100 00000000
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
.. .... ....|++.+.++.++++.|.+
T Consensus 162 ~~-~~~~----~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 162 GQ-RPVE----VFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp SS-CCEE----EEECBTTTTBSHHHHHHHHHT
T ss_pred cc-ceEE----EEEeECCcCCCHHHHHHHHHh
Confidence 00 1111 235788889999999987653
No 104
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.57 E-value=4.3e-15 Score=131.65 Aligned_cols=134 Identities=15% Similarity=0.204 Sum_probs=72.3
Q ss_pred EEEEcCCCCchHHHHHHhhcccccccccCC-CCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCCh---HH----HHH
Q 017924 22 VVLLGRTGNGKSATGNSILGRKAFKASAGS-SGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGS---EF----VGK 91 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~~~~~~~~~-~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~---~~----~~~ 91 (363)
|+|||+||||||||+|+|+|.......... ........+.......+ ..++++|++|++...... .. +..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~ 124 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDA 124 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHH
Confidence 999999999999999999998532111111 11112223333333122 268899999997642111 01 122
Q ss_pred HHHHHHhcc-----------CCCccE-EEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHH
Q 017924 92 EIVKCLGMA-----------KDGIHA-FLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (363)
Q Consensus 92 ~~~~~~~~~-----------~~~~~~-~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~ 159 (363)
.+..++... ..++|+ ++|+.+.++.++..+..+++.+. ..+ ++|+|+||+|.++. ..+..
T Consensus 125 q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~----~~~--~vI~Vi~KtD~Lt~--~E~~~ 196 (427)
T 2qag_B 125 QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD----SKV--NIIPIIAKADAISK--SELTK 196 (427)
T ss_dssp HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC----SCS--EEEEEESCGGGSCH--HHHHH
T ss_pred HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh----hCC--CEEEEEcchhccch--HHHHH
Confidence 222222111 112455 55566776678888755554443 222 89999999999977 55665
Q ss_pred Hhcc
Q 017924 160 FLGH 163 (363)
Q Consensus 160 ~~~~ 163 (363)
+...
T Consensus 197 l~~~ 200 (427)
T 2qag_B 197 FKIK 200 (427)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 105
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.57 E-value=1e-14 Score=115.97 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=92.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||+|.|++... .. ....+.+.+.....+.. ++ ..+.++||||..... .
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~-----------~ 78 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSF-DN-TYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFR-----------S 78 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCC-CS-SCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------G
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CC-CCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHH-----------H
Confidence 347999999999999999999986643 11 11222333333333334 43 478899999954321 1
Q ss_pred HHhccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.....+...|++++|+|+++..+.. ...++..+....... .++++|+||+|+........++ ......
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 147 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEE---------GERKAK 147 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccCcCCHHH---------HHHHHH
Confidence 1112234679999999987322211 223344444433323 3899999999986431111111 112223
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+..++ ..|+..+.++.++++.|.+.+
T Consensus 148 ~~~~~~~------~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 148 ELNVMFI------ETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp HHTCEEE------EEBTTTTBSHHHHHHHHHHTC
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 3333333 457778889999998876543
No 106
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.57 E-value=2.4e-14 Score=117.39 Aligned_cols=168 Identities=12% Similarity=0.051 Sum_probs=97.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||++.|++... . .....|+...+. .+... ....+.++||+|.... .
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~-~---~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~ 89 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCY-P---ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY-----------D 89 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCC-C---SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGG-----------T
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCC-C---CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhH-----------H
Confidence 3458999999999999999999987653 1 111122222222 12221 2346789999996432 1
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc----cCCCch
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG----HECPKP 168 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~----~~~~~~ 168 (363)
......+..+|++++|+|+++.-+-.. ..++..+..... . .++++|.||+|+.... ........ ......
T Consensus 90 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~ 165 (214)
T 3q3j_B 90 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-S--TRVLLIGCKTDLRTDL-STLMELSHQKQAPISYEQ 165 (214)
T ss_dssp TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-T--SEEEEEEECGGGGGCH-HHHHHHHHTTCCCCCHHH
T ss_pred HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccch-hhhhhhcccccCccCHHH
Confidence 223345668899999999984433332 344555555432 2 3899999999987530 00000000 000011
Q ss_pred HHHHHHhcCC-ceEEecCCCcccccchhH-HHHHHHHHHHHHH
Q 017924 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSVIV 209 (363)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~ 209 (363)
...+....+. .++ .+|++.+.+ +.++++.+...+.
T Consensus 166 ~~~~~~~~~~~~~~------e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 166 GCAIAKQLGAEIYL------EGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp HHHHHHHHTCSEEE------ECCTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEE------EeccCCCcccHHHHHHHHHHHHh
Confidence 2334444444 333 567888888 9999998877654
No 107
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=6.6e-15 Score=118.86 Aligned_cols=162 Identities=14% Similarity=0.108 Sum_probs=92.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..+|+|+|..|+|||||+|.|++... .. ....+.........+.+. ....+.++||||...... ..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~ 81 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTF-DP-ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT-----------LT 81 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC-----------SH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-Cc-cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh-----------hh
Confidence 47999999999999999999997653 11 111222222223333331 135688999999654221 11
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+..+|++++|+|+++..+... ..++..+..... ....++++|+||+|+... ....+. ...+....
T Consensus 82 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~--~~~~~~--------~~~~~~~~ 150 (195)
T 1x3s_A 82 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENR--EVDRNE--------GLKFARKH 150 (195)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSC--CSCHHH--------HHHHHHHT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCccc--ccCHHH--------HHHHHHHc
Confidence 122346799999999873322111 122222222211 112488999999998543 111111 12233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+..++ ..|+..+.++.++++.|.+.+..
T Consensus 151 ~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 151 SMLFI------EASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp TCEEE------ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCEEE------EecCCCCCCHHHHHHHHHHHHHh
Confidence 33333 45777889999999988877654
No 108
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.57 E-value=1.7e-14 Score=115.27 Aligned_cols=161 Identities=24% Similarity=0.181 Sum_probs=92.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|+|..|+|||||+|.|++... ......++... ...... ++. .+.++||||....... .
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~----~--- 83 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIF----VDDYDPTIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAM----R--- 83 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC----CSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCSCGGGCSS----H---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC----CCCCCCCccceeEEEEEe-CCcEEEEEEEECCCchhhHHH----H---
Confidence 3457999999999999999999996643 11112222222 222233 444 4567999996542211 1
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
. ..+...|++++|+|+++.-+-. ...++..+..... ....|+++|+||+|+........+ . ...+
T Consensus 84 ~----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~-~--------~~~~ 149 (183)
T 3kkq_A 84 E----QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRKVTRD-Q--------GKEM 149 (183)
T ss_dssp H----HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTCCSCHH-H--------HHHH
T ss_pred H----HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchhccCcCHH-H--------HHHH
Confidence 1 1123469999999987332211 1233333433222 112389999999998653111111 1 2223
Q ss_pred HHhcCCceEEecCCCccccc-chhHHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~ 209 (363)
....+..++ ..|+. .+.++.++++.+.+.+.
T Consensus 150 ~~~~~~~~~------~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 150 ATKYNIPYI------ETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp HHHHTCCEE------EEBCSSSCBSHHHHHHHHHHHHH
T ss_pred HHHhCCeEE------EeccCCCCCCHHHHHHHHHHHHh
Confidence 333344444 45677 78899999998877654
No 109
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.57 E-value=9.7e-15 Score=117.55 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=91.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++..... ....+.+.......+.. ++ ..+.++||||...... .
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~ 86 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQP--VHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRS-----------I 86 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSC-----------C
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhh-----------h
Confidence 4799999999999999999999765311 11111222222233333 33 4788999999654221 1
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+... ..++..+....... .++++|+||+|+........+ . ...+...
T Consensus 87 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~-~--------~~~~~~~ 155 (191)
T 2a5j_A 87 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLESRRDVKRE-E--------GEAFARE 155 (191)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH-H--------HHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCCccccCHH-H--------HHHHHHH
Confidence 1122346899999999873222221 23344444432222 389999999998643101111 1 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|+..+.++.++++.|.+.+
T Consensus 156 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 156 HGLIFM------ETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp HTCEEE------EECTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 333333 457778889999998876654
No 110
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.57 E-value=1.1e-14 Score=114.55 Aligned_cols=160 Identities=18% Similarity=0.102 Sum_probs=92.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
...+|+|+|..|+|||||+|.|++... .. ....+...+.....+...+ ...+.++||||...... .
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~ 70 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIF-TK-DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA-----------I 70 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC-CC-CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC-----------C
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCC-CC-CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH-----------H
Confidence 357999999999999999999997643 11 1111122222223333311 34788999999544211 1
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+...|++++|+|+++..+... ..++..+..... . .++++|+||+|+........+ . ...+...
T Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~~ 138 (168)
T 1z2a_A 71 TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-D--IPTALVQNKIDLLDDSCIKNE-E--------AEGLAKR 138 (168)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC-S--CCEEEEEECGGGGGGCSSCHH-H--------HHHHHHH
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccCcccccCHH-H--------HHHHHHH
Confidence 1122346799999999873222111 223344444332 2 389999999998753101111 1 2223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+..++ ..|+..+.++.++++.+.+.+
T Consensus 139 ~~~~~~------~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 139 LKLRFY------RTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp HTCEEE------ECBTTTTBSSHHHHHHHHHHH
T ss_pred cCCeEE------EEecCCCCCHHHHHHHHHHHH
Confidence 343333 457777889999998877654
No 111
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.57 E-value=3.9e-14 Score=119.73 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=95.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|.+|||||||+|.|+|...+.+ ... ++|.......+.. +..+.++||||......... .+.+.+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~-~~p-g~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVG-NWP-GVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSP--EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCC-SSS-CCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCccc-CCC-CCcEEEEEEEEec--CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence 36899999999999999999998764322 222 2343333222221 56788999999876432221 122322222
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.. ..+|++++|+|++ .+. ....++..+.. .+ .|+++++||+|.... ..+. .....+....+.
T Consensus 77 ~~-~~~d~vi~V~D~t-~~e-~~~~~~~~l~~-~~----~p~ilv~NK~Dl~~~--~~~~--------~~~~~l~~~lg~ 138 (272)
T 3b1v_A 77 LS-QRADSILNVVDAT-NLE-RNLYLTTQLIE-TG----IPVTIALNMIDVLDG--QGKK--------INVDKLSYHLGV 138 (272)
T ss_dssp HT-TCCSEEEEEEEGG-GHH-HHHHHHHHHHH-TC----SCEEEEEECHHHHHH--TTCC--------CCHHHHHHHHTS
T ss_pred hc-CCCCEEEEEecCC-chH-hHHHHHHHHHh-cC----CCEEEEEEChhhCCc--CCcH--------HHHHHHHHHcCC
Confidence 21 4689999999987 321 11222222222 12 389999999997532 1110 112333333343
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.++ .+|+..+.++.++++.+...+.
T Consensus 139 ~vi------~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 139 PVV------ATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp CEE------ECBTTTTBSHHHHHHHHHHSCT
T ss_pred CEE------EEEccCCCCHHHHHHHHHHHHh
Confidence 332 5688889999999998877553
No 112
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.56 E-value=1.5e-14 Score=117.97 Aligned_cols=162 Identities=15% Similarity=0.084 Sum_probs=68.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc-ccccccCCCCCce--eeEeEEEEeeC---CcEEEEEeCCCCCCCCCChHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTK--TCEMKTTVLKD---GQVVNVIDTPGLFDLSAGSEFVGK 91 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~-~~~~~~~~~~~t~--~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~~~ 91 (363)
...+|+|+|..|+|||||++.|++.. .|. .....|+ +.....+.+.+ ...+.++||||..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------- 84 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFL---KDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD----------- 84 (208)
T ss_dssp EEEEEEEC-------------------------------------CEEEECTTSSEEEEEEEEETTTTH-----------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCccc---CCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH-----------
Confidence 34799999999999999999999772 111 1111222 22233333422 3478899999953
Q ss_pred HHHHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhcc-ccccceEEEEeCCCCCC-cchhhHHHHhccCCCch
Q 017924 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLE-DHEKTLEDFLGHECPKP 168 (363)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~i~v~n~~D~~~-~~~~~l~~~~~~~~~~~ 168 (363)
.+.......+..+|++++|+|+++..+-.. ..++..+...... ....++++|+||+|+.. ......+ .
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~---------~ 155 (208)
T 2yc2_C 85 LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLD---------M 155 (208)
T ss_dssp HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHH---------H
T ss_pred HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHH---------H
Confidence 233445556678999999999873332122 2344444443320 01238999999999875 2001111 1
Q ss_pred HHHHHHhcCCceEEecCCCcccccc-hhHHHHHHHHHHHHH
Q 017924 169 LKEILQLCDNRCVLFDNKTKDEAKG-TEQVRQLLSLVNSVI 208 (363)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~ 208 (363)
...+....+..++ ..|+.. +.++.++++.|...+
T Consensus 156 ~~~~~~~~~~~~~------~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 156 AQDWATTNTLDFF------DVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp HHHHHHHTTCEEE------ECCC-------CHHHHHHHHHH
T ss_pred HHHHHHHcCCEEE------EeccCCCCcCHHHHHHHHHHHH
Confidence 2333444443333 457777 888999888776654
No 113
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.56 E-value=1.1e-14 Score=132.55 Aligned_cols=158 Identities=19% Similarity=0.243 Sum_probs=98.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeCCcEEEEEeCCCCC-CCCCChHHH-HHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLF-DLSAGSEFV-GKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~DtpG~~-~~~~~~~~~-~~~~~~ 95 (363)
+.+|+|+|.+|+|||||+|.|+|..... .+... .|.+.....+.+ ++..+.++||||+. ......... .+....
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~--vs~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAI--VTDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCC--CCCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCc--cCCCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 3689999999999999999999875311 22222 233333344455 78889999999987 432111100 011111
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.+..+|++++|+|+++..+..+...++.+ .. .|+++|+||+|+... ...++ +.....
T Consensus 320 ----~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~~---~piivV~NK~DL~~~--~~~~~---------~~~~~~- 376 (482)
T 1xzp_A 320 ----EIEKADIVLFVLDASSPLDEEDRKILERI----KN---KRYLVVINKVDVVEK--INEEE---------IKNKLG- 376 (482)
T ss_dssp ----HHHHCSEEEEEEETTSCCCHHHHHHHHHH----TT---SSEEEEEEECSSCCC--CCHHH---------HHHHHT-
T ss_pred ----HhhcccEEEEEecCCCCCCHHHHHHHHHh----cC---CCEEEEEECcccccc--cCHHH---------HHHHhc-
Confidence 22357999999999866676665544332 21 389999999998643 22221 111211
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
....+ ...|++++.++.+|++.|...+
T Consensus 377 ~~~~~------i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 377 TDRHM------VKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp CSTTE------EEEEGGGTCCHHHHHHHHHHHT
T ss_pred CCCcE------EEEECCCCCCHHHHHHHHHHHH
Confidence 11122 3568889999999999888754
No 114
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.55 E-value=4.2e-15 Score=134.89 Aligned_cols=161 Identities=17% Similarity=0.108 Sum_probs=94.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|||.+|+|||||+|.|+|......... .++|.+..+....+ .+..+.++||+|+.... ..+...+......
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~-~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDT-PGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCC-CCCccceEEEEEEE-CCceEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 5899999999999999999998754211122 22343444444444 67788999999986421 1134455555555
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
++..+|++++|+|+.+.++..+......+.. ...|+++|+||+|.... . ..... ++ . .+.
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~--~---~~~~~----~~----~-lg~- 138 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEM--R---ANIYD----FY----S-LGF- 138 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC----------CCCS----SG----G-GSS-
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCccc--h---hhHHH----HH----H-cCC-
Confidence 5567899999999987788776555444432 12389999999998643 1 00111 11 1 111
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
......|+..+.++.+|++.+...+.
T Consensus 139 ----~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 139 ----GEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp ----CCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred ----CCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 12235688889999999998877664
No 115
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.55 E-value=1.7e-14 Score=114.66 Aligned_cols=164 Identities=16% Similarity=0.067 Sum_probs=93.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC---cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG---QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|+|..|+|||||++.|++... .... ..+...+.....+.+ ++ ..+.++||||...... +
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~-~~t~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~--------~ 72 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETF-GKQY-KQTIGLDFFLRRITL-PGNLNVTLQIWDIGGQTIGGK--------M 72 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGT-THHH-HHTTTSSEEEEEEEE-TTTEEEEEEEEECTTCCTTCT--------T
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcC-CCCC-CCceeEEEEEEEEEe-CCCCEEEEEEEECCCCccccc--------h
Confidence 3457999999999999999999997653 1110 111112222333334 33 5788999999765321 1
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccc-eEEEEeCCCCCCcchhhHHHHhccCCCchHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~-~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~ 171 (363)
....+..+|++++|+|+++..+-.. ..++..+..........+ +++|.||+|+........+ . ...
T Consensus 73 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~-~--------~~~ 140 (178)
T 2hxs_A 73 ---LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPE-K--------HLR 140 (178)
T ss_dssp ---HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHH-H--------HHH
T ss_pred ---hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHH-H--------HHH
Confidence 1112346899999999873322222 233344444321111124 7889999998643001111 1 222
Q ss_pred HHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+....+..++ ..|+..+.++.++++.|...+.
T Consensus 141 ~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 141 FCQENGFSSH------FVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp HHHHHTCEEE------EECTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHcCCcEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 3333333333 4677888999999998877653
No 116
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.55 E-value=1.7e-14 Score=115.12 Aligned_cols=165 Identities=18% Similarity=0.110 Sum_probs=88.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||++.+++... .. ....|+...+. .+... ....+.++||||..... .
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~~---~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 71 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-PT---DYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN-----------R 71 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C-------------CBCCCC-------CEEECCCC-CTTT-----------T
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CC---CCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhh-----------h
Confidence 458999999999999999999986542 11 11112111111 11110 13355699999965422 1
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHH-h--ccCCCchHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF-L--GHECPKPLK 170 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~-~--~~~~~~~~~ 170 (363)
.....+...|++++|+|+++..+-... .++..+..... . .|+++|+||+|+... ...... . ..-......
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~v~~~~~~ 146 (182)
T 3bwd_D 72 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-G--VPIVLVGTKLDLRDD--KQFFIDHPGAVPITTVQGE 146 (182)
T ss_dssp TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC--HHHHHHC--CCCCCHHHHH
T ss_pred hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhhcC--cccccccccCCCCCHHHHH
Confidence 223345678999999998733222222 24444444332 2 389999999998654 211000 0 000000122
Q ss_pred HHHHhcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 171 EILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+....+. .++ ..|++.+.++.++++.+.+.+
T Consensus 147 ~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 147 ELKKLIGAPAYI------ECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 33333343 232 567888899999999876654
No 117
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.55 E-value=3.6e-15 Score=132.05 Aligned_cols=128 Identities=19% Similarity=0.200 Sum_probs=76.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee---E-------------------------------------
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC---E------------------------------------- 59 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~---~------------------------------------- 59 (363)
..|+|||.+|||||||+|+|+|...+..+ .+.+|... .
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~--~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRG--SGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCC--SSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCC--CCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 49999999999999999999997643221 11221100 0
Q ss_pred --------------eEEEEeeCCcEEEEEeCCCCCCCCCC--hHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHH
Q 017924 60 --------------MKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET 123 (363)
Q Consensus 60 --------------~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~ 123 (363)
...+.......+++|||||+...... ...+...+...+..++.++|+++++++.. ........
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~-~~~~~~~~ 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA-NQDLATSD 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET-TSCGGGCH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc-cCCcCCHH
Confidence 00011112446889999998874221 12234455555555566889999998765 22222233
Q ss_pred HHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 124 AVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 124 ~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
.+.++..+... ..++++|+||+|....
T Consensus 192 ~~~l~~~~~~~--~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 192 AIKISREVDPS--GDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHHHSCTT--CTTEEEEEECGGGCCT
T ss_pred HHHHHHHhccc--CCCEEEEEeCCccCCC
Confidence 44444443222 2389999999998854
No 118
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=128.52 Aligned_cols=150 Identities=19% Similarity=0.242 Sum_probs=77.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccC----CCCCceeeEeEEEE-eeCC--cEEEEEeCCCCCCCCCCh---HHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG----SSGVTKTCEMKTTV-LKDG--QVVNVIDTPGLFDLSAGS---EFV 89 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~----~~~~t~~~~~~~~~-~~~~--~~~~l~DtpG~~~~~~~~---~~~ 89 (363)
.+|+|||+||||||||+|+|+|......+.. ....++......+. ...+ ..++++||+|+....... ..+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i 111 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 111 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHH
Confidence 5799999999999999999998764211110 01112211111111 1112 367899999987642111 111
Q ss_pred HH----HHHHHH---------hccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchh
Q 017924 90 GK----EIVKCL---------GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK 155 (363)
Q Consensus 90 ~~----~~~~~~---------~~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~ 155 (363)
.. .+...+ ......+|+++|+++.+ +.++..+..++..+. . . .++|+|+||+|.... .
T Consensus 112 ~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~-~--v~iIlVinK~Dll~~--~ 183 (418)
T 2qag_C 112 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---E-K--VNIIPLIAKADTLTP--E 183 (418)
T ss_dssp HHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---T-T--SEEEEEEESTTSSCH--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---c-c--CcEEEEEEcccCccH--H
Confidence 11 111111 01123456788888765 578887765555443 2 2 289999999999865 5
Q ss_pred hHHHHhccCCCchHHHHHHhcCCceEE
Q 017924 156 TLEDFLGHECPKPLKEILQLCDNRCVL 182 (363)
Q Consensus 156 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (363)
.+..+... +...+...+..++.
T Consensus 184 ev~~~k~~-----i~~~~~~~~i~~~~ 205 (418)
T 2qag_C 184 ECQQFKKQ-----IMKEIQEHKIKIYE 205 (418)
T ss_dssp HHHHHHHH-----HHHHHHHHTCCCCC
T ss_pred HHHHHHHH-----HHHHHHHcCCeEEe
Confidence 55544444 44444444444443
No 119
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.55 E-value=4.8e-15 Score=122.00 Aligned_cols=166 Identities=17% Similarity=0.163 Sum_probs=96.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||+|.|++... ..... .+.............++ ..+.++||||........
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~-~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------- 78 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRF-EKNYN-ATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK--------- 78 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCST-TCEEE-TTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC---------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC-CCCCC-CccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHH---------
Confidence 457999999999999999999996653 11111 11111111111222122 568899999965432111
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
...+..+|++++|+|+++..+..+ ..++..+....... .++++|+||+|+........+ . ...+..
T Consensus 79 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~-~--------~~~~~~ 145 (218)
T 4djt_A 79 --DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNRQKISKK-L--------VMEVLK 145 (218)
T ss_dssp --HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC----CCHH-H--------HHHHTT
T ss_pred --HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH-H--------HHHHHH
Confidence 112346899999999974433222 23445555554433 389999999998743101111 1 112222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHcCC
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 213 (363)
..+..++ ..|++.+.++.++++.+...+.....
T Consensus 146 ~~~~~~~------~~Sa~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 146 GKNYEYF------EISAKTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp TCCCEEE------EEBTTTTBTTTHHHHHHHHHHHCCTT
T ss_pred HcCCcEE------EEecCCCCCHHHHHHHHHHHHhcccc
Confidence 2232333 56788889999999999888865433
No 120
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.55 E-value=4.7e-15 Score=135.33 Aligned_cols=160 Identities=18% Similarity=0.111 Sum_probs=93.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|||.+|+|||||+|.|+|........ ..++|.+.......+ .+..+.++||||+... ...+.+.+......
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~-~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVED-TPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIG---DEPFLAQIRQQAEI 98 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCcceeEEEEEEEE-CCceEEEEECCCCCCc---chHHHHHHHHHHHh
Confidence 699999999999999999999876421212 223344444444444 6778899999998742 22223455555555
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
++..+|++++|+|....++..+....+.+.. . ..++++|+||+|.... . ..... ++ ..-...
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-~----~~pvilV~NK~D~~~~--~---~~~~e----~~----~lg~~~ 160 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAADEEVAKILYR-T----KKPVVLAVNKLDNTEM--R---ANIYD----FY----SLGFGE 160 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-C----CSCEEEEEECC--------------CC----SG----GGSSSS
T ss_pred hHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-c----CCCEEEEEECccchhh--h---hhHHH----HH----HcCCCc
Confidence 5567899999999887788887766666543 1 2389999999997643 1 01111 01 110011
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
. ...|+..+.++.+|++.+...+
T Consensus 161 ~------~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 161 P------YPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp E------EECCTTTCTTHHHHHHHHHTTG
T ss_pred e------EEeecccccchHHHHHHHHhhc
Confidence 1 1456777788888888776554
No 121
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.55 E-value=1.7e-14 Score=116.66 Aligned_cols=164 Identities=10% Similarity=0.065 Sum_probs=94.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccC------CCCCceeeEeEEE---Eee-CCcEEEEEeCCCCCCCCCChH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKTT---VLK-DGQVVNVIDTPGLFDLSAGSE 87 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~------~~~~t~~~~~~~~---~~~-~~~~~~l~DtpG~~~~~~~~~ 87 (363)
...+|+|+|..|+|||||++.|.|...-..... ....|........ ... ....+.++||||.....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 457999999999999999999987643111000 0011221111111 110 13468899999976531
Q ss_pred HHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhc----cccccceEEEEeCCCCCCcchhhHHHHhcc
Q 017924 88 FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG----KNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
.+ ....+..+|++++|+|++..........+..+...+. .....|+++|.||+|+... ...++
T Consensus 89 ----~~---~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~---- 155 (198)
T 3t1o_A 89 ----AS---RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LPVEM---- 155 (198)
T ss_dssp ----HH---HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CCHHH----
T ss_pred ----HH---HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cCHHH----
Confidence 11 1224467899999999873333334444443333221 1122489999999998754 22221
Q ss_pred CCCchHHHHHHhcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 164 ECPKPLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 164 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+..+....+. .++ ..|+..+.++.++++.+...+.
T Consensus 156 -----~~~~~~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 156 -----VRAVVDPEGKFPVL------EAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp -----HHHHHCTTCCSCEE------ECBGGGTBTHHHHHHHHHHHHH
T ss_pred -----HHHHHHhcCCceEE------EEecCCCcCHHHHHHHHHHHHH
Confidence 2223333333 222 5688889999999998877653
No 122
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.55 E-value=3e-14 Score=112.21 Aligned_cols=162 Identities=22% Similarity=0.137 Sum_probs=87.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|..|+|||||++.|++..... ....+.+.......+.. ++ ..+.++||+|...... .+...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-------~~~~~- 71 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDH--AHEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGG-------WLQDH- 71 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC---------------CH-
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcc--cccCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccch-------hhhhh-
Confidence 689999999999999999998654311 11111222222233333 33 4677999999765210 01111
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.+...|++++|+|+++.-+-.. ..++..+...... ...|+++|.||+|+........+ . ...+....
T Consensus 72 --~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~-~--------~~~~~~~~ 139 (169)
T 3q85_A 72 --CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLE-E--------GRHLAGTL 139 (169)
T ss_dssp --HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSCHH-H--------HHHHHHHT
T ss_pred --hhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCCHH-H--------HHHHHHHc
Confidence 1224699999999873222111 2233333333221 12389999999998643111111 1 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+..++ ..|+..+.++.++++.+.+.+..
T Consensus 140 ~~~~~------~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 140 SCKHI------ETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCcEE------EecCccCCCHHHHHHHHHHHHHh
Confidence 44333 56788889999999988776643
No 123
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.55 E-value=2.4e-13 Score=111.01 Aligned_cols=172 Identities=13% Similarity=0.148 Sum_probs=93.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc-cccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChH--HHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~ 93 (363)
..+.+|+|+|++|||||||+|.|+|... ....+..+... ... .+.+ ++ .+.++||||+........ ......
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~-~~~--~~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ-LIN--LFEV-AD-GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------C-CEE--EEEE-ET-TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccce-eeE--EEEe-cC-CEEEEECcCCcccccCHHHHHHHHHH
Confidence 4567999999999999999999998761 11112223221 111 2222 22 567999999864221111 111111
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
...+.......++++++++++...+..+.....++.. .+ .+++++.||+|..+. ......+.. +..++
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~----~~~~~v~nK~D~~s~--~~~~~~~~~-----~~~~~ 166 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-SN----IAVLVLLTKADKLAS--GARKAQLNM-----VREAV 166 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSCH--HHHHHHHHH-----HHHHH
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-cC----CCeEEEEecccCCCc--hhHHHHHHH-----HHHHH
Confidence 2222222356789999999875666544444443332 22 278888999998865 322221222 33344
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
........ ...+|+.++.++.++++.|.+...
T Consensus 167 ~~~~~~~~----~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 167 LAFNGDVQ----VETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGGCSCEE----EEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HhcCCCCc----eEEEeecCCCCHHHHHHHHHHHHh
Confidence 33322111 125677788899999998877653
No 124
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.54 E-value=1.9e-13 Score=123.05 Aligned_cols=167 Identities=13% Similarity=0.173 Sum_probs=102.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccc-cccCCCCCceeeEeEEEEee--------------C--------CcEEEEE
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLK--------------D--------GQVVNVI 74 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~l~ 74 (363)
...+|+++|+.|+|||||++.|+|..... ......+.|+...+....+. . ...++|+
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 44799999999999999999999764211 11112334544333322210 0 1578999
Q ss_pred eCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCC-CHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcc
Q 017924 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (363)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~ 153 (363)
||||.. .+...+......+|++++|+|+++.. .......+..+..+ +. .++++++||+|+...
T Consensus 89 DtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~~~- 152 (410)
T 1kk1_A 89 DAPGHE-----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVDK- 152 (410)
T ss_dssp ECSSHH-----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH-
T ss_pred ECCChH-----------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCCCH-
Confidence 999942 33344444455779999999998554 55555555555433 32 278999999999865
Q ss_pred hhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+...... +..++....... ......|+..+.++.+|++.|...+.
T Consensus 153 -~~~~~~~~~-----i~~~l~~~~~~~---~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 153 -EKALENYRQ-----IKEFIEGTVAEN---APIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp -HHHHHHHHH-----HHHHHTTSTTTT---CCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred -HHHHHHHHH-----HHHHHHhcCcCC---CeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 333333333 333433211100 01225678888999999999887654
No 125
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.54 E-value=5.4e-14 Score=113.77 Aligned_cols=167 Identities=11% Similarity=0.048 Sum_probs=89.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|.+|||||||++.|++.......+ |.......+.+ ++..+.++||||..... ..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~ 85 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP-----TLHPTSEELTI-AGMTFTTFDLGGHIQAR-----------RV 85 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------C-----CCCCSCEEEEE-TTEEEEEEEECC----C-----------CG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCC-----CCCceeEEEEE-CCEEEEEEECCCcHhhH-----------HH
Confidence 445799999999999999999999765311111 11112233344 66888999999965421 12
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCc-chhhHHHHhccCCCchHHH-H-
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKE-I- 172 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~-~~~~l~~~~~~~~~~~~~~-~- 172 (363)
....+..+|++++|+|+++.-+-.. ..++..+..... ....|+++|.||+|+... ..+.+.+++.. ....... .
T Consensus 86 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~ 163 (198)
T 1f6b_A 86 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDET-IANVPILILGNKIDRPEAISEERLREMFGL-YGQTTGKGSV 163 (198)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTSCEEEEEECTTSTTCCCHHHHHHHHTC-TTTCCCSSCC
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEEECCCccccCCHHHHHHHhCc-cccccccccc
Confidence 2234557899999999974332222 222232222111 112389999999998643 11222323221 0000000 0
Q ss_pred -HHhc-CCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 173 -LQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 173 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
+... ..... ...+|++++.++.++++.|.+
T Consensus 164 ~~~~~~~~~~~----~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 164 SLKELNARPLE----VFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp CTTTCCSCCEE----EEECBTTTTBSHHHHHHHHHT
T ss_pred ccccccCceEE----EEEEECCCCCCHHHHHHHHHH
Confidence 0000 01111 236788899999999987754
No 126
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.54 E-value=2.6e-13 Score=119.36 Aligned_cols=170 Identities=15% Similarity=0.100 Sum_probs=95.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|.+|||||||+|.|+|...... . ....|.+.....+.+ ++..+.++||+|+.... +.. ..+.+...+. .
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~-~-~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~l-p~~-lve~f~~tl~-~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVD-T-KLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGI-PPQ-IVDAFFVTLS-E 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSSC-CGG-GHHHHHHHHH-G
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc-C-CcccccCCEEEEEEE-CCEEEEEEeCCCchhcC-CHH-HHHHHHHHHH-H
Confidence 499999999999999999998764211 1 111233333344445 66788999999975421 222 2233433332 3
Q ss_pred CCCccEEEEEeecCCCC--CHHHHHH-HHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc-
Q 017924 101 KDGIHAFLVVFSVTNRF--SQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC- 176 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~--~~~~~~~-l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~- 176 (363)
...+|.+++|+|+++.. ....... ...+.. ++. ...++++|.||+|.... . ....+.. +..+....
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~-~~~p~ilV~NK~Dl~~~--~-~~~~~~~-----~~~l~~~l~ 324 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGV-SGKPILVTLNKIDKING--D-LYKKLDL-----VEKLSKELY 324 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTC-CSCCEEEEEECGGGCCS--C-HHHHHHH-----HHHHHHHHC
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCc-CCCCEEEEEECCCCCCc--h-HHHHHHH-----HHHHHHHhc
Confidence 45789999999987432 1122222 223333 221 11389999999998764 2 1111111 11122222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
..... ....|+.++.++.+|++.|...+..
T Consensus 325 ~~~~~----~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 325 SPIFD----VIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp SCEEE----EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCc----EEEEECCCCcCHHHHHHHHHHHhcc
Confidence 11111 1356888899999999999887765
No 127
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.54 E-value=1.8e-13 Score=109.30 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=93.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||++.|++... .. ....|..... ..+... ....+.++||||.... ..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~---~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~ 70 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PE---NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY-----------DN 70 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CS---SCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG-----------TT
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CC---CCCCccceeEEEEEEECCEEEEEEEEECCCChhh-----------hh
Confidence 347999999999999999999997643 11 1111221111 122221 2346789999996432 11
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc---CCC-chH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KPL 169 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~---~~~-~~~ 169 (363)
.....+...|++++|+|+++..+-.. ..++..+..... . .|+++|.||+|+.... ..+.++... ... +..
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~ 146 (184)
T 1m7b_A 71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQG 146 (184)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHH
T ss_pred hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHHH
Confidence 22334568899999999873322222 223344444332 2 3899999999987431 111111100 000 112
Q ss_pred HHHHHhcCCceEEecCCCccccc-chhHHHHHHHHHHHHH
Q 017924 170 KEILQLCDNRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVI 208 (363)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~ 208 (363)
..+....+...++ ..|++ .+.++.++++.+.+.+
T Consensus 147 ~~~~~~~~~~~~~-----e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 147 ANMAKQIGAATYI-----ECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHHHTCSEEE-----ECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEE-----EeeecCCCcCHHHHHHHHHHHH
Confidence 3334343422222 56776 5789999998876654
No 128
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.54 E-value=7.5e-14 Score=112.11 Aligned_cols=169 Identities=17% Similarity=0.109 Sum_probs=91.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH--
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL-- 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~-- 97 (363)
.+|+|+|..|+|||||+|.|++... ...... +.+.... .+.+ . .+.++||||+......+......+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~-~~t~~~~--~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRP-GVTRKII--EIEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSST-TCTTSCE--EEEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC-ccCCCC-CccceeE--EEec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 4899999999999999999997753 222222 2222222 2222 2 6779999997654433322222222221
Q ss_pred -hcc-CCCccEEEEEeecCCCCCHHHHHHH---------HHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCC
Q 017924 98 -GMA-KDGIHAFLVVFSVTNRFSQEEETAV---------HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP 166 (363)
Q Consensus 98 -~~~-~~~~~~~l~v~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~ 166 (363)
... ...+++++++.|.. .+......+. ..+....... .|+++|+||+|+... . .+..
T Consensus 75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~--~~~~----- 142 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRELD--IPTIVAVNKLDKIKN--V--QEVI----- 142 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHHTT--CCEEEEEECGGGCSC--H--HHHH-----
T ss_pred HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHhcC--CceEEEeehHhccCc--H--HHHH-----
Confidence 221 34567777877765 2211101111 1112211112 389999999998865 2 1111
Q ss_pred chHHHHHHhcCCceEE-ecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 167 KPLKEILQLCDNRCVL-FDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 167 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
..+....+..+.. .......|++.+.++.++++.+...+..
T Consensus 143 ---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 143 ---NFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp ---HHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ---HHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 1222222221100 0011256888899999999988777654
No 129
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.54 E-value=5.3e-14 Score=111.78 Aligned_cols=156 Identities=18% Similarity=0.115 Sum_probs=88.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee-EeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||++.+++... .. .. .|+.. ....+.. ++ ..+.++||+|... .
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~-~~-~~---~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~--------~---- 67 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSY-QV-LE---KTESEQYKKEMLV-DGQTHLVLIREEAGAPD--------A---- 67 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCC-CC-CS---SCSSSEEEEEEEE-TTEEEEEEEEECSSSCC--------H----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CC-cC---CCcceeEEEEEEE-CCEEEEEEEEECCCCch--------h----
Confidence 458999999999999999999997653 11 11 11111 1222233 33 3578899999653 0
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhcc-ccccceEEEEeCCCCCCc-chhhHHHHhccCCCchHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK-NVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKE 171 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~-~~~~~~i~v~n~~D~~~~-~~~~l~~~~~~~~~~~~~~ 171 (363)
. .+.++|++++|+|+++..+-... .++.++...... ....|+++|.||+|+... .+....+. ...
T Consensus 68 ~----~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~--------~~~ 135 (178)
T 2iwr_A 68 K----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR--------ARA 135 (178)
T ss_dssp H----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHH--------HHH
T ss_pred H----HHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHH--------HHH
Confidence 1 12347999999998733332222 223344443221 012389999999998421 00110111 222
Q ss_pred HHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+....+...++ ..|++.+.++.++++.+...+
T Consensus 136 ~~~~~~~~~~~-----~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 136 LXADMKRCSYY-----ETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp HHHHHSSEEEE-----EEBTTTTBTHHHHHHHHHHHH
T ss_pred HHHhhcCCeEE-----EEeccccCCHHHHHHHHHHHH
Confidence 22222222222 567788899999998876654
No 130
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.54 E-value=1.6e-13 Score=112.77 Aligned_cols=157 Identities=15% Similarity=0.103 Sum_probs=90.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee--EeEEEEeeC-----------CcEEEEEeCCCCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLKD-----------GQVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~~-----------~~~~~l~DtpG~~~~~~~ 85 (363)
..+|+|+|..|+|||||+|.|++... . .....|+.. ....+.+.. ...+.|+||||..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~-~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----- 95 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKF-N---PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE----- 95 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCC-C---CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-----
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC-C---cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH-----
Confidence 37999999999999999999997643 1 111112211 111222211 3568899999932
Q ss_pred hHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHH-HHHHHHhccc--cccceEEEEeCCCCCCcchhhHHHHhc
Q 017924 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV-HRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l-~~~~~~~~~~--~~~~~i~v~n~~D~~~~~~~~l~~~~~ 162 (363)
.+.......+..+|++++|+|+++.. ....+ .++..+.... ...++++|+||+|+........+ .
T Consensus 96 ------~~~~~~~~~~~~~d~iilV~D~~~~~---s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~-~-- 163 (217)
T 2f7s_A 96 ------RFRSLTTAFFRDAMGFLLMFDLTSQQ---SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER-Q-- 163 (217)
T ss_dssp ------HHHHHHHHHHTTCCEEEEEEETTCHH---HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH-H--
T ss_pred ------hHHhHHHHHhcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH-H--
Confidence 23333334456789999999987321 21222 2222222110 22489999999998643101111 1
Q ss_pred cCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...+....+..++ ..|+..+.++.++++.|...+
T Consensus 164 ------~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 164 ------ARELADKYGIPYF------ETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp ------HHHHHHHTTCCEE------EEBTTTTBTHHHHHHHHHHHH
T ss_pred ------HHHHHHHCCCcEE------EEECCCCCCHHHHHHHHHHHH
Confidence 2223333343333 457778889999998877654
No 131
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.53 E-value=3.2e-13 Score=121.39 Aligned_cols=166 Identities=15% Similarity=0.219 Sum_probs=94.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccccccc-ccCCCCCceeeEeEEEEee--------------C--------CcEEEEE
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTVLK--------------D--------GQVVNVI 74 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~l~ 74 (363)
...+|+++|+.++|||||++.|+|...... .....+.|+...+....+. . ...++++
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 458999999999999999999997642111 1111233443332222110 0 1578999
Q ss_pred eCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCC-CHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcc
Q 017924 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (363)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~ 153 (363)
||||. ..+...+......+|++++|+|+++.. .......+..+.. ++. .++++++||+|+...
T Consensus 87 DtPGh-----------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~~- 150 (408)
T 1s0u_A 87 DSPGH-----------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVDE- 150 (408)
T ss_dssp ECSSH-----------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSCT-
T ss_pred ECCCH-----------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCCH-
Confidence 99993 234444555566789999999998554 4555555554433 332 278999999999765
Q ss_pred hhhHHHHhccCCCchHHHHHHhcC-CceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 154 EKTLEDFLGHECPKPLKEILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+...... +.+++.... ... .....|+..+.++.+|++.|...+.
T Consensus 151 -~~~~~~~~~-----i~~~l~~~~~~~~----~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 151 -KQAEENYEQ-----IKEFVKGTIAENA----PIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp -TTTTTHHHH-----HHHHHTTSTTTTC----CEEEC------CHHHHHHHHHHHSC
T ss_pred -HHHHHHHHH-----HHHHHhhcCCCCC----eEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 221111122 233333211 111 1125688889999999999887654
No 132
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.53 E-value=3.1e-14 Score=116.23 Aligned_cols=157 Identities=20% Similarity=0.222 Sum_probs=93.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE--eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
..+|+|||..|+|||||++.+++.. |... ...|+... ...... ++ ..+.||||+|.....
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~-f~~~---~~~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~~----------- 76 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDS-FDNT---YQATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERFR----------- 76 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC-CC-------------CEEEEEEC-SSCEEEEEEECCSCTTTCG-----------
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCC-CCCC---cCCccceEEEEEEEEe-cceEEEEEEEECCCchhhh-----------
Confidence 4799999999999999999988443 2221 11222211 222222 33 467799999965431
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
......+.+.+++++|+|++++-+-.. ..++..+....+.++ +++||.||+|+........++ ...+.
T Consensus 77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~--piilVgNK~Dl~~~r~V~~~e---------~~~~a 145 (216)
T 4dkx_A 77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADKRQVSIEE---------GERKA 145 (216)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC--eEEEEeeccchHhcCcccHHH---------HhhHH
Confidence 112233467899999999883333222 345555655555544 899999999986431011111 22233
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
...+..|+ .+|++++.++.++++.|.+.+
T Consensus 146 ~~~~~~~~------e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 146 KELNVMFI------ETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp HHHTCEEE------EEBTTTTBSHHHHHHHHHHHC
T ss_pred HHhCCeeE------EEeCCCCcCHHHHHHHHHHHH
Confidence 33344433 578899999999998776554
No 133
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.53 E-value=9.7e-14 Score=125.62 Aligned_cols=167 Identities=15% Similarity=0.111 Sum_probs=98.7
Q ss_pred CCCCccEEEEEcCCCCchHHHHHHhhcccccccc-----------------------------cCCCCCceeeEeEEEEe
Q 017924 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTVL 65 (363)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~ 65 (363)
+.....+|+++|+.|+|||||++.|++....... ....++|++.....+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 3345689999999999999999999654210000 00123566555555555
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCC-------HHHHHHHHHHHHHhcccccc
Q 017924 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS-------QEEETAVHRLPNLFGKNVFD 138 (363)
Q Consensus 66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~ 138 (363)
.+..++|+||||..+ +...+..+...+|++++|+|++.... ...+..+..+.. .+. .
T Consensus 93 -~~~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v---~ 156 (439)
T 3j2k_7 93 -EKKHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGV---K 156 (439)
T ss_pred -CCeEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCC---C
Confidence 677999999999543 33333344557899999999974432 234444444333 232 1
Q ss_pred ceEEEEeCCCCCCc--chhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHH
Q 017924 139 YMIVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS 202 (363)
Q Consensus 139 ~~i~v~n~~D~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 202 (363)
++++++||+|+... +...+++.... +..++..++............|+..+.++.++.+
T Consensus 157 ~iIvviNK~Dl~~~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 157 HLIVLINKMDDPTVNWSNERYEECKEK-----LVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eEEEEeecCCCcccchHHHHHHHHHHH-----HHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 48999999998643 11233333333 4445444432100000123567888888887554
No 134
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.53 E-value=6.9e-14 Score=114.51 Aligned_cols=166 Identities=19% Similarity=0.124 Sum_probs=94.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-eEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
...+|+|+|..|+|||||++.+++... .. ....|+... ...+.. ++ ..+.++||||......
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 72 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF-PT---DYIPTVFDNFSANVAV-DGQIVNLGLWDTAGQEDYSR---------- 72 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CS---SCCCSSCCCEEEEEEC-SSCEEEEEEECCCCCCCCCC----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-Cc---cCCCccceeEEEEEEE-CCEEEEEEEEECCCcHHHHH----------
Confidence 447999999999999999999986542 11 111122111 112223 33 4788999999765321
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHh-ccCCCchHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL-GHECPKPLKE 171 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~-~~~~~~~~~~ 171 (363)
.....+...|++++|+|+++.-+-... .++..+..... . .|+++|+||+|+... ....... ..........
T Consensus 73 -~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~v~~~~~~~ 146 (212)
T 2j0v_A 73 -LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-N--VPIVLVGTKLDLRDD--KGYLADHTNVITSTQGEE 146 (212)
T ss_dssp ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC--HHHHHTCSSCCCHHHHHH
T ss_pred -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeCHHhhhC--ccccccccCCCCHHHHHH
Confidence 122345678999999998733222221 34444444322 2 389999999998654 2110000 0000001223
Q ss_pred HHHhcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 172 ILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+....+. .++ ..|+..+.++.++++.+...+..
T Consensus 147 ~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 147 LRKQIGAAAYI------ECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp HHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHcCCceEE------EccCCCCCCHHHHHHHHHHHHhh
Confidence 3333343 333 56778889999999988776643
No 135
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.53 E-value=2.1e-13 Score=110.84 Aligned_cols=167 Identities=14% Similarity=0.102 Sum_probs=94.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
...+|+|+|..|+|||||++.|++... . .....|+.... ..+... ....+.++||+|.... ..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~---~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~ 91 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-P---ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY-----------DN 91 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-C---SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG-----------TT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-C---CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh-----------hH
Confidence 457999999999999999999997643 1 11111222222 122221 1346889999996432 11
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHH--HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc---CCC-chH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KPL 169 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~---~~~-~~~ 169 (363)
.....+..+|++++|+|+++..+-.. ..++..+...+. . .++++|.||+|+.... ..+.++... ... +..
T Consensus 92 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~ 167 (205)
T 1gwn_A 92 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQG 167 (205)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHH
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEechhhccch-hhhhhhcccccCCCCHHHH
Confidence 22334568899999999873322222 233344444332 2 3899999999987431 111111110 000 112
Q ss_pred HHHHHhcCCceEEecCCCccccc-chhHHHHHHHHHHHHH
Q 017924 170 KEILQLCDNRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVI 208 (363)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~ 208 (363)
..+....+...++ .+|++ .+.++.++++.+.+.+
T Consensus 168 ~~~~~~~~~~~~~-----e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 168 ANMAKQIGAATYI-----ECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHHHTCSEEE-----ECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEE-----EeeeccCCcCHHHHHHHHHHHH
Confidence 3334343422222 46776 5789999998876654
No 136
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.53 E-value=3.3e-14 Score=123.76 Aligned_cols=169 Identities=18% Similarity=0.117 Sum_probs=99.5
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|||.+|||||||||+|++...... .. ...|....+..+.+.++..++++||||+.........+...+.+.+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~-~~-~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i--- 234 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIA-DY-HFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI--- 234 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEES-ST-TSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH---
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccc-cC-CccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH---
Confidence 689999999999999999997653211 11 1123333444445533478999999996431111111223333332
Q ss_pred CCCccEEEEEeecCC---CCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 101 KDGIHAFLVVFSVTN---RFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~---~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.+++++++|+|+++ +-...+. .++..+..+...-...|+++|+||+|+... .. . +..+...+
T Consensus 235 -~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e---~--------~~~l~~~l 300 (342)
T 1lnz_A 235 -ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AE---N--------LEAFKEKL 300 (342)
T ss_dssp -HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HH---H--------HHHHHHHC
T ss_pred -HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HH---H--------HHHHHHHh
Confidence 34699999999973 2222332 233344433211123489999999998754 21 1 11222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHHcC
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 212 (363)
... ......|+..+.++.+|++.|...+....
T Consensus 301 ~~~----~~v~~iSA~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 301 TDD----YPVFPISAVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp CSC----CCBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred hcC----CCEEEEECCCCcCHHHHHHHHHHHHhhCc
Confidence 211 12346788889999999999998886543
No 137
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.53 E-value=5.2e-14 Score=126.38 Aligned_cols=168 Identities=15% Similarity=0.122 Sum_probs=99.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccccccc-----c--------cCCCCCceeeEeEEEEe----eCCcEEEEEeCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA-----S--------AGSSGVTKTCEMKTTVL----KDGQVVNVIDTPGL 79 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~-----~--------~~~~~~t~~~~~~~~~~----~~~~~~~l~DtpG~ 79 (363)
.+..+|+++|..|+|||||+|+|+|...... . ......+.........+ .....++++||||.
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 4458999999999999999999998532000 0 00000000000000000 01257889999995
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCC-CHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHH
Q 017924 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE 158 (363)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~ 158 (363)
.+ +...+......+|++++|+|+++.. .......+..+..+ +. .++++++||+|+... ..+.
T Consensus 86 ~~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~~--~~~~ 148 (403)
T 3sjy_A 86 EV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVSK--EEAL 148 (403)
T ss_dssp GG-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH--HHHH
T ss_pred HH-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccch--HHHH
Confidence 43 2222223345789999999998655 44555555554443 32 279999999999865 4444
Q ss_pred HHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 159 DFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..... +.+.+........ .....|+..+.++.+|++.|...+.
T Consensus 149 ~~~~~-----i~~~l~~~~~~~~---~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 149 SQYRQ-----IKQFTKGTWAENV---PIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHHH-----HHHHHTTSTTTTC---CEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHH-----HHHHHHhhCCCCC---EEEEEECCCCcChHHHHHHHHHhCC
Confidence 44444 4444433221110 1235688889999999999887653
No 138
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.52 E-value=1.6e-13 Score=121.02 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=68.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCC-----CCCceeeEeEEEEee-CC--cEEEEEeCCCCCCCCCC------
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTVLK-DG--QVVNVIDTPGLFDLSAG------ 85 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~------ 85 (363)
.+|+|||.+|+|||||+|+|+|...|...... ...|+.......... ++ ..++++||||+++....
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~ 117 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT 117 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHH
Confidence 68999999999999999999887665432211 011222222222111 23 26889999999654221
Q ss_pred -hHHHHHHHHHHHhc---------cCCCccEEEEEeec-CCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcch
Q 017924 86 -SEFVGKEIVKCLGM---------AKDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE 154 (363)
Q Consensus 86 -~~~~~~~~~~~~~~---------~~~~~~~~l~v~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~ 154 (363)
...+...+..++.. ...++|+++|+++. .+.+...+..++..+ ... .|+++|+||+|....
T Consensus 118 i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~--~piIlV~NK~Dl~~~-- 189 (361)
T 2qag_A 118 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNK--VNIVPVIAKADTLTL-- 189 (361)
T ss_dssp THHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS---SCEEEEEECCSSSCH--
T ss_pred HHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccC--CCEEEEEECCCCCCH--
Confidence 11122222232211 12356788888875 456776665444433 223 389999999999865
Q ss_pred hhHHHH
Q 017924 155 KTLEDF 160 (363)
Q Consensus 155 ~~l~~~ 160 (363)
..+..+
T Consensus 190 ~ev~~~ 195 (361)
T 2qag_A 190 KERERL 195 (361)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 139
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.52 E-value=3e-13 Score=116.82 Aligned_cols=174 Identities=13% Similarity=0.114 Sum_probs=91.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccc---cCCCCC----------------------ceee--------------
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS---AGSSGV----------------------TKTC-------------- 58 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~---~~~~~~----------------------t~~~-------------- 58 (363)
...+|+|+|.+|+|||||+|+|+|....... .+..+. ++..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4479999999999999999999988642111 010110 0000
Q ss_pred ----------EeEEEEeeCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHHHhccCCCccEE-EEEeecCCCCCHHHHHHH
Q 017924 59 ----------EMKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKDGIHAF-LVVFSVTNRFSQEEETAV 125 (363)
Q Consensus 59 ----------~~~~~~~~~~~~~~l~DtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-l~v~~~~~~~~~~~~~~l 125 (363)
........+...++|+||||+..... ....+...+...+..+....+.+ ++|+|++..++..+. +
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~--~ 182 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--L 182 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH--H
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH--H
Confidence 00001111246789999999875321 01111222333333333345555 478888755554442 1
Q ss_pred HHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 126 ~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
..+..+... ..++++|+||+|+.... ....+.+.. .+..+...+. .....|+..+.++.++++.+.
T Consensus 183 ~~~~~~~~~--~~~~i~V~NK~Dl~~~~-~~~~~~~~~--------~~~~~~~~~~---~v~~~SA~~~~gi~~l~~~l~ 248 (299)
T 2aka_B 183 KIAKEVDPQ--GQRTIGVITKLDLMDEG-TDARDVLEN--------KLLPLRRGYI---GVVNRSQKDIDGKKDITAALA 248 (299)
T ss_dssp HHHHHHCTT--CSSEEEEEECGGGSCTT-CCCHHHHTT--------CSSCCTTCEE---ECCCCCCBCTTSCBCHHHHHH
T ss_pred HHHHHhCCC--CCeEEEEEEccccCCCC-chHHHHHhC--------CcCcCCCCcE---EEECCChhhccccccHHHHHH
Confidence 222222211 23899999999987541 112222221 0000011122 234668888889888888776
Q ss_pred HH
Q 017924 206 SV 207 (363)
Q Consensus 206 ~~ 207 (363)
..
T Consensus 249 ~~ 250 (299)
T 2aka_B 249 AE 250 (299)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 140
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.52 E-value=9e-14 Score=127.67 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=93.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc-cc----------------------------cccCCCCCceeeEeEEEEeeCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA-FK----------------------------ASAGSSGVTKTCEMKTTVLKDG 68 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~-~~----------------------------~~~~~~~~t~~~~~~~~~~~~~ 68 (363)
+..+|+|+|..|+|||||++.|++... +. ......++|.......+.. .+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CC
Confidence 457999999999999999999976511 00 0001123455555555555 67
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC-------CCHHHHHHHHHHHHHhccccccceE
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMI 141 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~i 141 (363)
..+.|+||||..+ +...+..++..+|++++|+|+++. +.......+..+.. .+. .+++
T Consensus 111 ~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~---~~iI 175 (483)
T 3p26_A 111 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLI 175 (483)
T ss_dssp CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC---CCEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC---CcEE
Confidence 8899999999754 222233344578999999999743 33344444443333 332 2699
Q ss_pred EEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC---ceEEecCCCcccccchhHHHH
Q 017924 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQ 199 (363)
Q Consensus 142 ~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 199 (363)
+|+||+|+...+...+++.... +..++...+. ...+ ...|+..+.++.+
T Consensus 176 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~----i~iSA~~g~gi~e 227 (483)
T 3p26_A 176 IAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINW----VPISGFSGEGVYK 227 (483)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGGGEEE----EECCSSSCTTSSS
T ss_pred EEEECcCcccchHHHHHHHHHH-----HHHHHHHcCCCcccceE----EEEeeecCCCccc
Confidence 9999999876322444444444 5555544432 1111 2456666666654
No 141
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.52 E-value=3.9e-13 Score=127.24 Aligned_cols=165 Identities=14% Similarity=0.178 Sum_probs=96.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce-------------------------------------------
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK------------------------------------------- 56 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~------------------------------------------- 56 (363)
.+|+|||..++|||||+|+|+|...+..+. +.+|.
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~~LP~g~--g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRDFLPRGS--GIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSCCSCCSS--SCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccCcCC--ccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 599999999999999999999976533221 11111
Q ss_pred --------eeEeEEEEeeCCcEEEEEeCCCCCCCCCC--h----HHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHH
Q 017924 57 --------TCEMKTTVLKDGQVVNVIDTPGLFDLSAG--S----EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE 122 (363)
Q Consensus 57 --------~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~ 122 (363)
......+...+...++|+||||++..... . ..+...+..++. ...|++++|+|+++.+...+.
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~---~~aDlIL~VVDAs~~~~~~d~ 206 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT---KENCLILAVSPANSDLANSDA 206 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT---STTEEEEEEEETTSCSSSCHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh---cCCcEEEEEEcCCCCcchhHH
Confidence 00011112223456889999999873211 1 223333333332 577999999999856665554
Q ss_pred -HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHH
Q 017924 123 -TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201 (363)
Q Consensus 123 -~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 201 (363)
..+..+.. . ..++++|+||+|....... ...++.. ...... .-|......|+.++.++.+|+
T Consensus 207 l~ll~~L~~---~--g~pvIlVlNKiDlv~~~~~-~~~il~~----------~~~~l~-lg~~~VV~iSA~~G~GvdeL~ 269 (772)
T 3zvr_A 207 LKIAKEVDP---Q--GQRTIGVITKLDLMDEGTD-ARDVLEN----------KLLPLR-RGYIGVVNRSQKDIDGKKDIT 269 (772)
T ss_dssp HHHHHHHCT---T--CSSEEEEEECTTSSCTTCC-SHHHHTT----------CSSCCS-SCEEECCCCCCEESSSSEEHH
T ss_pred HHHHHHHHh---c--CCCEEEEEeCcccCCcchh-hHHHHHH----------Hhhhhh-ccCCceEEecccccccchhHH
Confidence 34433332 1 2389999999999865211 1111111 000000 012234567888899999998
Q ss_pred HHHHH
Q 017924 202 SLVNS 206 (363)
Q Consensus 202 ~~l~~ 206 (363)
+.+..
T Consensus 270 eaI~~ 274 (772)
T 3zvr_A 270 AALAA 274 (772)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88876
No 142
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=2.5e-13 Score=109.71 Aligned_cols=159 Identities=18% Similarity=0.151 Sum_probs=91.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|+|..|+|||||++.|++... .. ... .|....+ ..+.. ++ ..+.++||||... .. ..
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~-~~-~~~--~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----~~---~~ 92 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRF-IW-EYD--PTLESTYRHQATI-DDEVVSMEILDTAGQED-----TI---QR 92 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCC-CS-CCC--TTCCEEEEEEEEE-TTEEEEEEEEECCCCCC-----CH---HH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC-Cc-ccC--CCCCceEEEEEEE-CCEEEEEEEEECCCCCc-----cc---ch
Confidence 4568999999999999999999997653 11 111 1222222 22233 33 4688999999765 11 11
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
..+ +...|++++|+|+++.-+-.. ..++..+...... ...|+++|.||+|+........++ ...+
T Consensus 93 ~~~----~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~~---------~~~~ 158 (196)
T 2atv_A 93 EGH----MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHSRQVSTEE---------GEKL 158 (196)
T ss_dssp HHH----HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGGCCSCHHH---------HHHH
T ss_pred hhh----hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccccccCHHH---------HHHH
Confidence 111 224699999999873222211 2234444443221 123899999999986531011111 1222
Q ss_pred HHhcCCceEEecCCCcccccchh-HHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVI 208 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~ 208 (363)
....+..++ ..|+..+. ++.++++.|...+
T Consensus 159 ~~~~~~~~~------~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 159 ATELACAFY------ECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp HHHHTSEEE------ECCTTTCTTCHHHHHHHHHHHH
T ss_pred HHHhCCeEE------EECCCcCCcCHHHHHHHHHHHH
Confidence 233333333 45777788 9999998876655
No 143
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.52 E-value=3.6e-13 Score=118.80 Aligned_cols=171 Identities=13% Similarity=0.138 Sum_probs=89.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccc---cCCCCC----------------------ceee----------------
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS---AGSSGV----------------------TKTC---------------- 58 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~---~~~~~~----------------------t~~~---------------- 58 (363)
.+|+|||..|+|||||+|+|+|....... .+..+. ++..
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~ 111 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT 111 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhccc
Confidence 69999999999999999999997642111 011010 0000
Q ss_pred --------EeEEEEeeCCcEEEEEeCCCCCCCCCC--hHHHHHHHHHHHhccC-CCccEEEEEeecCCCCCHHHHHHHHH
Q 017924 59 --------EMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAK-DGIHAFLVVFSVTNRFSQEEETAVHR 127 (363)
Q Consensus 59 --------~~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~l~~ 127 (363)
....+...+...++||||||+...... ...+.+.+...+..+. ...+++++|++++..+...+. +..
T Consensus 112 ~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~~i 189 (353)
T 2x2e_A 112 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--LKV 189 (353)
T ss_dssp TTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--HHH
T ss_pred CCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--HHH
Confidence 000011112467899999998753211 1112222222222222 344677777777644443332 223
Q ss_pred HHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 128 LPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 128 ~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
+..+... ..++++|+||+|+.... ....+++... .......++ .....|+..+.++.++++.+..
T Consensus 190 ~~~~~~~--~~~~i~V~NK~Dl~~~~-~~~~~~~~~~--------~~~l~~~~~---~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 190 AKEVDPQ--GQRTIGVITKLDLMDEG-TDARDVLENK--------LLPLRRGYI---GVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHCTT--CTTEEEEEECGGGSCTT-CCCHHHHTTC--------SSCCTTCEE---ECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHhCcC--CCceEEEeccccccCcc-hhHHHHHhCC--------cccccCCce---EEEeCCcccccccccHHHHHHH
Confidence 3333222 23899999999997541 1122222220 000011122 2345688888888888887765
No 144
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.52 E-value=3.3e-13 Score=116.60 Aligned_cols=126 Identities=19% Similarity=0.188 Sum_probs=77.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc-ccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
+.+|+|+|..|+|||||+|.|++.. .+.+ . ....|+........+.++..+.++||||.... ....+....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~-~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~~~ 74 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDT-R-RLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF------MENYFTKQK 74 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGG-G-GCCCCCSEEEEEEEETTTEEEEEEEECCSHHH------HHHHHTTTH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccc-c-CcCCccceEEEEEEeCCceEEEEEECCCcHHH------hhhhhhhHH
Confidence 4799999999999999999988763 2211 1 12234444444444435678899999995421 000111222
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
...+.++|++++|+|+++.-+..+. .+..++..+.......|+++|+||+|+...
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 2334578999999999854443433 233334333211112389999999999863
No 145
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.52 E-value=1e-13 Score=111.88 Aligned_cols=164 Identities=21% Similarity=0.152 Sum_probs=92.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc-cccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|||.+|+|||||++.|+|... +...+. .+.......+.+ ++ ..+.++||+|..... ..+
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~-------~~~ 89 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPE---NPEDTYERRIMV-DKEEVTLVVYDIWEQGDAG-------GWL 89 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTT---SCTTEEEEEEEE-TTEEEEEEEECCCCCSGGG-------HHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCC---cccceEEEEEEE-CCEEEEEEEEecCCCccch-------hhh
Confidence 4457999999999999999999986532 211111 121222222333 44 356788999975421 112
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~ 172 (363)
... .+...+++++|+|++++-+-. ...++..+..... ....|+++|.||+|+........++ ...+
T Consensus 90 ~~~---~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~---------~~~~ 156 (195)
T 3cbq_A 90 RDH---CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEE---------GRHL 156 (195)
T ss_dssp HHH---HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCSCHHH---------HHHH
T ss_pred HHH---hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCcCHHH---------HHHH
Confidence 221 123579999999987332211 1233333433321 1123899999999987431111111 2223
Q ss_pred HHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
....+..++ ..|++.+.++.++++.+...+..
T Consensus 157 a~~~~~~~~------e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 157 AGTLSCKHI------ETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp HHHTTCEEE------EEBTTTTBSHHHHHHHHHHHHHT
T ss_pred HHHhCCEEE------EEcCCCCCCHHHHHHHHHHHHHH
Confidence 333333332 56788889999999988776643
No 146
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.51 E-value=1.3e-13 Score=124.85 Aligned_cols=159 Identities=11% Similarity=0.100 Sum_probs=95.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc--ccc------------ccC-----------------CCCCceeeEeEEEEe
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA--FKA------------SAG-----------------SSGVTKTCEMKTTVL 65 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~--~~~------------~~~-----------------~~~~t~~~~~~~~~~ 65 (363)
....+|+++|+.|+|||||++.|++... +.. +.. ..++|+...+..+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 3457999999999999999999986531 000 000 012344444444444
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEe
Q 017924 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (363)
Q Consensus 66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n 145 (363)
.+..++++||||..+. ...+. .....+|++++|+|+++.........+..+.. .+. .++++|+|
T Consensus 102 -~~~~~~iiDtpGh~~f-------~~~~~----~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~~---~~iIvviN 165 (434)
T 1zun_B 102 -AKRKFIIADTPGHEQY-------TRNMA----TGASTCDLAIILVDARYGVQTQTRRHSYIASL-LGI---KHIVVAIN 165 (434)
T ss_dssp -SSEEEEEEECCCSGGG-------HHHHH----HHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC---CEEEEEEE
T ss_pred -CCceEEEEECCChHHH-------HHHHH----HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEE
Confidence 5678999999996542 12222 23457899999999986666666666655443 232 26899999
Q ss_pred CCCCCCcchhhHHHHhccCCCchHHHHHHhcC--CceEEecCCCcccccchhHHHH
Q 017924 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCD--NRCVLFDNKTKDEAKGTEQVRQ 199 (363)
Q Consensus 146 ~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 199 (363)
|+|+...+...++..... +..++..++ ..... ....|++.+.++.+
T Consensus 166 K~Dl~~~~~~~~~~i~~~-----~~~~~~~~g~~~~~~~---~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 166 KMDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTMA---FVPMSALKGDNVVN 213 (434)
T ss_dssp CTTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEEE---EEECCTTTCTTTSS
T ss_pred cCcCCcccHHHHHHHHHH-----HHHHHHHhCCCccCce---EEEEeccCCCCccc
Confidence 999975322334434444 555655555 11111 12456666666665
No 147
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.51 E-value=1.3e-14 Score=119.75 Aligned_cols=161 Identities=16% Similarity=0.062 Sum_probs=93.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhh-cccccccccCCCCCceeeEeEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSIL-GRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~-g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||+|.++ |...-...++.+ .+. ....+... ....+.++||||......
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~-~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------- 79 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG-VEV--HPLVFHTNRGPIKFNVWDTAGQEKFGG---------- 79 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTT-EEE--EEEEEEETTEEEEEEEEEECSGGGTSC----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc-eeE--EEEEEEECCEEEEEEEEeCCChHHHhH----------
Confidence 345799999999999999999954 332211111111 122 22222221 235788999999644221
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHH
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~ 173 (363)
.....+...|++++|+|+++..+... ..++..+...+. . .++++|+||+|+... .... .... +.
T Consensus 80 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~--~~~~-~~~~--------~~ 144 (221)
T 3gj0_A 80 -LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDIKDR--KVKA-KSIV--------FH 144 (221)
T ss_dssp -CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-T--CCEEEEEECTTSSSC--SSCG-GGCC--------HH
T ss_pred -HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECCccccc--cccH-HHHH--------HH
Confidence 11122346899999999883322222 234444444432 2 389999999998754 2211 1111 22
Q ss_pred HhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
...+..++ ..|++.+.++.++++.|...+...
T Consensus 145 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 145 RKKNLQYY------DISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp HHHTCEEE------ECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHhC
Confidence 23333333 467888999999999988877543
No 148
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.51 E-value=7.1e-14 Score=129.36 Aligned_cols=163 Identities=15% Similarity=0.107 Sum_probs=97.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
...+|+|||..|+|||||+|.|++... . ... .|+...+..+.+ .+..+.++||+|.... ....
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~-~---~~~-~T~~~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~ 383 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQS-V---TTI-PTVGFNVETVTY-KNVKFNVWDVGGQDKI-----------RPLW 383 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSC-C---CCC-CCSSEEEEEEES-SSCEEEEEEECCCGGG-----------SGGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCC-C---CcC-CccceeEEEEEe-CCEEEEEEECCCcHHH-----------HHHH
Confidence 457999999999999999999997763 1 111 244444444444 6788999999995432 1223
Q ss_pred hccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...|++++|+|+++..+-.+. ..+..+..... ....|++||+||+|+... ...+++... +. ....
T Consensus 384 ~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~--~~~~~~~~~-----~~--~~~~ 453 (497)
T 3lvq_E 384 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLPDA--MKPHEIQEK-----LG--LTRI 453 (497)
T ss_dssp GGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGG-GTTCEEEEEEECCSSSSC--CCHHHHHHH-----TT--CTTC
T ss_pred HHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhh-cCCCcEEEEEECCCCCcC--CCHHHHHHH-----hc--hhhh
Confidence 4456788999999999844332222 12222221111 112389999999998754 222222111 00 0000
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
..... ....+|+.++.++.++++.|.+.+..
T Consensus 454 ~~~~~---~~~~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 454 RDRNW---YVQPSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp CSSCE---EEEECBTTTTBTHHHHHHHHHHHCC-
T ss_pred hcCCe---EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 01111 12357888999999999998876543
No 149
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.51 E-value=2.7e-14 Score=127.58 Aligned_cols=166 Identities=19% Similarity=0.163 Sum_probs=101.8
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
.....+|+|+|..|+|||||+|.|++......... .+.|+......+.+.....++++||||+.+.........+....
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~-~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDY-AGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCC-CCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence 34557999999999999999999998764222122 22344444555555233489999999998754322111112222
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
.+..+|++++|+|+ .....+..++..+... + .++++|+||+|+... ... +... .+...
T Consensus 110 ----~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-~----~piIvV~NK~Dl~~~--~~~-~~~~--------~l~~~ 167 (423)
T 3qq5_A 110 ----VFYRADCGILVTDS--APTPYEDDVVNLFKEM-E----IPFVVVVNKIDVLGE--KAE-ELKG--------LYESR 167 (423)
T ss_dssp ----HHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-T----CCEEEECCCCTTTTC--CCT-HHHH--------HSSCC
T ss_pred ----HHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-C----CCEEEEEeCcCCCCc--cHH-HHHH--------HHHHH
Confidence 23468999999998 4556667777776654 2 389999999998865 221 1111 11111
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
++. .....|++.+.++.++++.|.+.+..
T Consensus 168 ~g~------~v~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 168 YEA------KVLLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp TTC------CCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred cCC------CEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 121 33467888899999999999887743
No 150
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.51 E-value=1.6e-13 Score=109.66 Aligned_cols=165 Identities=16% Similarity=0.147 Sum_probs=84.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc-ccccccCCCCCceeeEeEEEEe------eCCcEEEEEeCCCCCCCCCChHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEMKTTVL------KDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~-~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~l~DtpG~~~~~~~~~~~~~~ 92 (363)
.+|+|+|.+|||||||++.|+|.. .|.. ... .|+...+..... .....+.++||+|...
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~-~~~--~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------- 68 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLG-MQS--ATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE----------- 68 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC--------------CSEEEEEEEC---------CEEEEEEECSHHH-----------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCC-Ccc--eeccEEeEEeeeccccCCCCceEEEEEecCCCHH-----------
Confidence 689999999999999999999853 2211 111 122122211111 1245788999999432
Q ss_pred HHHHHhccCCCccEEEEEeecCCCCC-HH-HHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHH
Q 017924 93 IVKCLGMAKDGIHAFLVVFSVTNRFS-QE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (363)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~-~~-~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~ 170 (363)
+.......+.+.+++++|+|+++..+ -. ...++..+..... . .++++|.||+|+... ..+...... ...
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~----~~~ 139 (184)
T 2zej_A 69 FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-S--SPVILVGTHLDVSDE--KQRKACMSK----ITK 139 (184)
T ss_dssp HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-T--CEEEEEEECGGGCCH--HHHHHHHHH----HHH
T ss_pred HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-C--CcEEEEEECCCcccc--hhhHHHHHH----HHH
Confidence 11111122235688899999873321 11 1223333333221 2 388999999998754 222211111 011
Q ss_pred HHHHhcCCceEEecCCCcccccchh-HHHHHHHHHHHHHH
Q 017924 171 EILQLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIV 209 (363)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~ 209 (363)
.+....+.... ......|++.+. ++.+|++.+.+.+.
T Consensus 140 ~~~~~~~~~~~--~~~~~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 140 ELLNKRGFPAI--RDYHFVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp HTTTCTTSCEE--EEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcch--hheEEEecccCchhHHHHHHHHHHHHh
Confidence 11111222200 011245777774 88888888766554
No 151
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.51 E-value=4.7e-13 Score=119.83 Aligned_cols=164 Identities=18% Similarity=0.204 Sum_probs=98.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc------ccc----c----cCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA------FKA----S----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~------~~~----~----~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (363)
..+|+++|+.|+|||||++.|++... |.. . ....+.|+......+.. .+..++|+||||..
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~---- 77 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHA---- 77 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHH----
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChH----
Confidence 47999999999999999999987421 000 0 00123344433333333 56789999999943
Q ss_pred ChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccc-eEEEEeCCCCCCcchhhHHHHhcc
Q 017924 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
.+...+...+..+|++++|+|+++.........+..+.. .+- + +++++||+|+... ...++.....
T Consensus 78 -------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~v----p~iivviNK~Dl~~~-~~~~~~~~~~ 144 (397)
T 1d2e_A 78 -------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-IGV----EHVVVYVNKADAVQD-SEMVELVELE 144 (397)
T ss_dssp -------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CCEEEEEECGGGCSC-HHHHHHHHHH
T ss_pred -------HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cCC----CeEEEEEECcccCCC-HHHHHHHHHH
Confidence 334444455678999999999986666666666655543 232 5 6789999998753 1233333333
Q ss_pred CCCchHHHHHHhcCC---ceEEecCCCcccccchh---------H-HHHHHHHHHHHHH
Q 017924 164 ECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTE---------Q-VRQLLSLVNSVIV 209 (363)
Q Consensus 164 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---------~-~~~l~~~l~~~~~ 209 (363)
+.+++..++. ...+ ...|+..+. + +.+|++.|...+.
T Consensus 145 -----~~~~l~~~~~~~~~~~~----i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 145 -----IRELLTEFGYKGEETPI----IVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp -----HHHHHHHTTSCTTTSCE----EECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred -----HHHHHHHcCCCcccCcE----EEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 4445554431 1111 134555443 3 6777777766543
No 152
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.50 E-value=3.8e-13 Score=107.73 Aligned_cols=160 Identities=19% Similarity=0.114 Sum_probs=90.1
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
....+|+|+|..|+|||||++.|++... .. ....|+...+ ..... ++ ..+.++||+|...... +
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~-~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~--------~ 85 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRF-IS---EYDPNLEDTYSSEETV-DHQPVHLRVMDTADLDTPRN--------C 85 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSC-CS---CCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CCC--------T
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCC-Cc---ccCCCccceeeEEEEE-CCEEEEEEEEECCCCCcchh--------H
Confidence 3457999999999999999999987653 21 1112222222 12222 33 4677999999764321 1
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhcc-ccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHH
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~-~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~ 171 (363)
.. .+...|++++|+|+++.-+-.. ..++..+...... ....++++|.||+|+........++ ...
T Consensus 86 ~~----~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---------~~~ 152 (187)
T 3c5c_A 86 ER----YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAE---------GVA 152 (187)
T ss_dssp HH----HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHH---------HHH
T ss_pred HH----HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHH---------HHH
Confidence 11 2246799999999873322222 2234444443210 0123899999999986431011111 222
Q ss_pred HHHhcCCceEEecCCCcccc-cchhHHHHHHHHHHHHH
Q 017924 172 ILQLCDNRCVLFDNKTKDEA-KGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~ 208 (363)
+....+..++ ..|+ ..+.++.++++.+...+
T Consensus 153 ~~~~~~~~~~------e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 153 LAGRFGCLFF------EVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp HHHHHTCEEE------ECCSSSCSHHHHHHHHHHHHHH
T ss_pred HHHHcCCcEE------EEeecCccccHHHHHHHHHHHH
Confidence 3333343333 4677 68899999999876654
No 153
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.50 E-value=5.9e-14 Score=129.26 Aligned_cols=117 Identities=14% Similarity=0.177 Sum_probs=78.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccc----------------cc----cCCCCCceeeEeEEEEeeCCcEEEEEeCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFK----------------AS----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG 78 (363)
..+|+|+|+.|+|||||+|.|++..... .. ....++|+......+.+ .+..++|+||||
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTPG 91 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTPG 91 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECCC
Confidence 4799999999999999999996221100 00 00012333334444555 788999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+.. ... ..+...+|++++|+|+++.........+..+... + .|+++|+||+|+...
T Consensus 92 ~~df~-------~~~----~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-~----iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFT-------EDT----YRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-H----TPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCC-------HHH----HHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-T----CCEEEEEECTTSCCS
T ss_pred chhHH-------HHH----HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEeCCCCccc
Confidence 87642 122 2234467999999999877777777766655432 2 289999999999754
No 154
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.50 E-value=1.7e-15 Score=122.83 Aligned_cols=159 Identities=19% Similarity=0.176 Sum_probs=86.1
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
..+|+|+|..|+|||||+|.|++..... ....+.+.......+.+ ++ ..+.++||||...... .
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~ 98 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTE--SYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT-----------I 98 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCC--HHHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCC-----------C
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC--CcCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHH-----------H
Confidence 4799999999999999999999765311 11111222233333334 44 4688999999654321 1
Q ss_pred HhccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHh
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~ 175 (363)
....+..+|++++|+|+++..+... ..++..+...... ..++++|+||+|+... ..+. ......+...
T Consensus 99 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~--~~v~-------~~~~~~~~~~ 167 (199)
T 3l0i_B 99 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK--KVVD-------YTTAKEFADS 167 (199)
T ss_dssp SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC----CCCC-------SCC-CHHHHT
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCcc--ccCC-------HHHHHHHHHH
Confidence 2234467899999999884332222 2233333322222 2389999999998644 1110 0012223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.+.. ....|+..+.++.++++.|.+.+
T Consensus 168 ~~~~------~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 168 LGIP------FLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp TTCC------BCCCCC---HHHHHHHHHHTTTT
T ss_pred cCCe------EEEEECCCCCCHHHHHHHHHHHH
Confidence 3322 23568888999999998876544
No 155
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.49 E-value=1.7e-13 Score=123.21 Aligned_cols=118 Identities=14% Similarity=0.165 Sum_probs=77.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc-------ccccc--c------CCCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK-------AFKAS--A------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~-------~~~~~--~------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
....+|+++|+.|+|||||++.|++.. .|... . ...+.|.......+.. .+..++++||||..+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHAD 87 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHH
Confidence 455899999999999999999998741 11000 0 0122343333333333 567899999999764
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccc-eEEEEeCCCCCC
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLE 151 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~i~v~n~~D~~~ 151 (363)
. ...+......+|++++|+|+++.........+..+... +- + +++++||+|+..
T Consensus 88 f-----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~i----p~iivviNK~Dl~~ 142 (405)
T 2c78_A 88 Y-----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFMNKVDMVD 142 (405)
T ss_dssp G-----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TC----CCEEEEEECGGGCC
T ss_pred H-----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEECccccC
Confidence 2 12222334578999999999866666666666555442 32 5 789999999874
No 156
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=6.2e-13 Score=108.21 Aligned_cols=162 Identities=20% Similarity=0.185 Sum_probs=89.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc-cccccCCCCCceeeEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
..+|+|||.+|+|||||+|.++|... |...... ...+.....+.+ ++. .+.++||+|... ....
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~--~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~----------~~~~ 103 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV--LGEDTYERTLMV-DGESATIILLDMWENKG----------ENEW 103 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-----CCTTEEEEEEEE-TTEEEEEEEECCTTTTH----------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCc--cceeeEEEEEEE-CCeeeEEEEeecCCCcc----------hhhh
Confidence 37999999999999999999997532 2211111 111111222333 443 456899998432 0111
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
.....+...+++++|++++++-+-... .++..+..... ....|+++|.||+|+........++ ...+..
T Consensus 104 l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~e---------~~~~a~ 173 (211)
T 2g3y_A 104 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSE---------GRACAV 173 (211)
T ss_dssp HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHHH---------HHHHHH
Confidence 123345678999999998733222221 22222322211 1123899999999986431011111 111222
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+..++ .+|++.+.++.++++.+...+.
T Consensus 174 ~~~~~~~------e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 174 VFDCKFI------ETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp HHTCEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2232222 5688889999999998776553
No 157
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.48 E-value=2.7e-13 Score=119.63 Aligned_cols=149 Identities=14% Similarity=0.178 Sum_probs=95.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+++|+.++|||||++.|+. .+.|+....+.+.+ .+..++++||||..+. ...+.. .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~----------~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f-------~~~~~~----~ 80 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK----------KGTSSDITMYNNDK-EGRNMVFVDAHSYPKT-------LKSLIT----A 80 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE----------EEEESSSEEEEECS-SSSEEEEEECTTTTTC-------HHHHHH----H
T ss_pred EEEEECCCCCCHHHHHHHHHh----------CCEEEEeeEEEEec-CCeEEEEEECCChHHH-------HHHHHH----H
Confidence 899999999999999999981 12233344444444 5778999999997663 122222 2
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccce-EEEEe-CCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM-IVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-i~v~n-~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
...+|++++|+| +..........+..+.. .+. +. ++++| |+|+ .. ..++..... +.+++...+.
T Consensus 81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~-~~i----~~~ivvvNNK~Dl-~~--~~~~~~~~~-----i~~~l~~~~~ 146 (370)
T 2elf_A 81 LNISDIAVLCIP-PQGLDAHTGECIIALDL-LGF----KHGIIALTRSDST-HM--HAIDELKAK-----LKVITSGTVL 146 (370)
T ss_dssp HHTCSEEEEEEC-TTCCCHHHHHHHHHHHH-TTC----CEEEEEECCGGGS-CH--HHHHHHHHH-----HHHHTTTSTT
T ss_pred HHHCCEEEEEEc-CCCCcHHHHHHHHHHHH-cCC----CeEEEEEEeccCC-CH--HHHHHHHHH-----HHHHHHhcCC
Confidence 246799999999 75666666666555543 332 44 88888 9998 44 334433333 4444433321
Q ss_pred c-eEEecCCCc--ccccc---hhHHHHHHHHHHHHHH
Q 017924 179 R-CVLFDNKTK--DEAKG---TEQVRQLLSLVNSVIV 209 (363)
Q Consensus 179 ~-~~~~~~~~~--~~~~~---~~~~~~l~~~l~~~~~ 209 (363)
. .-+ .. .|+.. +.++.+|++.|...+.
T Consensus 147 ~~~~i----i~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 147 QDWEC----ISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp TTCEE----EECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred CceEE----EecccccccCcCCCCHHHHHHHHHhhcc
Confidence 1 111 23 67778 8899999887776654
No 158
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.8e-13 Score=127.04 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=96.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccccccccc------------C-----------------CCCCceeeEeEEEEeeC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASA------------G-----------------SSGVTKTCEMKTTVLKD 67 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~------------~-----------------~~~~t~~~~~~~~~~~~ 67 (363)
....+|+|||..|+|||||+|.|++........ . ..++|+......+.. .
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-H 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-S
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-C
Confidence 446899999999999999999998663210000 0 023455555555555 6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC-------CCHHHHHHHHHHHHHhccccccce
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYM 140 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~ 140 (363)
+..++|+||||..+ +...+..+...+|++++|+|+++. +.......+..+.. ++. .++
T Consensus 244 ~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi---~~i 308 (611)
T 3izq_1 244 RANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNL 308 (611)
T ss_dssp SCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC---CEE
T ss_pred CceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC---CeE
Confidence 78899999999754 344455566789999999998721 12233333333322 232 268
Q ss_pred EEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc---eEEecCCCcccccchhHHHHH
Q 017924 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR---CVLFDNKTKDEAKGTEQVRQL 200 (363)
Q Consensus 141 i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l 200 (363)
++|+||+|+.......+++.... +..++..++.. ..+ ...|+..+.++.++
T Consensus 309 IVVvNKiDl~~~~~~~~~ei~~~-----l~~~l~~~g~~~~~~~~----i~vSA~tG~gI~el 362 (611)
T 3izq_1 309 IIAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINW----VPISGFSGEGVYKI 362 (611)
T ss_dssp EEEEECTTTTTTCHHHHHHHHHH-----HHHHHHHHTCCGGGCEE----EECCTTTCTTTSSC
T ss_pred EEEEecccccchhHHHHHHHHHH-----HHHHHHhhcccccCccE----EeeecccCCCcccc
Confidence 99999999986322344444444 55555444421 111 24566667666544
No 159
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.45 E-value=6.3e-15 Score=135.08 Aligned_cols=163 Identities=13% Similarity=0.174 Sum_probs=102.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
.+|+|+|+.|+|||||++.|++..... ...++.|.....+.+.+.++..++||||||..+.. .....
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~~~--~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~-----------~~~~~ 71 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQVAA--MEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS-----------AMRAR 71 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHHHH--SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT-----------TSBBS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccc--ccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH-----------HHHHH
Confidence 689999999999999999999765411 22334444444444444345678999999976532 22334
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCCc
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
.+..+|++++|+|+++.........+..+... .. |+++++||+|+...+...+...+.. +......++..
T Consensus 72 ~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~---~v--PiIVViNKiDl~~~~~~~v~~~l~~-----~~~~~e~~~~~ 141 (537)
T 3izy_P 72 GTQVTDIVILVVAADDGVMKQTVESIQHAKDA---HV--PIVLAINKCDKAEADPEKVKKELLA-----YDVVCEDYGGD 141 (537)
T ss_dssp SSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT---TC--CEEECCBSGGGTTTSCCSSSSHHHH-----TTSCCCCSSSS
T ss_pred HHccCCEEEEEEECCCCccHHHHHHHHHHHHc---CC--cEEEEEecccccccchHHHHHHHHh-----hhhhHHhcCCC
Confidence 55678999999999867777666666555432 22 8999999999864311111111111 00001111111
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
.. ....|+..+.++.+|++.+..++.
T Consensus 142 ~~----iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 142 VQ----AVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp EE----ECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred ce----EEEEECCCCCCchhHHHHHHHhhh
Confidence 11 236788899999999999887764
No 160
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.44 E-value=4.8e-13 Score=121.20 Aligned_cols=139 Identities=19% Similarity=0.254 Sum_probs=80.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc-ccccc----------------------------cCCCCCceeeEeEEEEeeCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK-AFKAS----------------------------AGSSGVTKTCEMKTTVLKDG 68 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~-~~~~~----------------------------~~~~~~t~~~~~~~~~~~~~ 68 (363)
+..+|+++|+.|+|||||++.|++.. .+... ....+.|+......+.+ .+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~ 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KK 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CC
Confidence 44799999999999999999998541 11000 00123454444444444 67
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC-------CCHHHHHHHHHHHHHhccccccceE
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMI 141 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~i 141 (363)
..++++||||..+ +...+..++..+|++++|+|+++. +.......+..+.. .+. .+++
T Consensus 84 ~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~---~~ii 148 (435)
T 1jny_A 84 YFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQLI 148 (435)
T ss_dssp CEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTCE
T ss_pred eEEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEE
Confidence 7899999999765 222333456788999999999742 22222333332222 232 2688
Q ss_pred EEEeCCCCCCc--chhhHHHHhccCCCchHHHHHHhcC
Q 017924 142 VVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 142 ~v~n~~D~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
+++||+|+... +...++..... +..++...+
T Consensus 149 vviNK~Dl~~~~~~~~~~~~~~~~-----i~~~~~~~~ 181 (435)
T 1jny_A 149 VAVNKMDLTEPPYDEKRYKEIVDQ-----VSKFMRSYG 181 (435)
T ss_dssp EEEECGGGSSSTTCHHHHHHHHHH-----HHHHHHHTT
T ss_pred EEEEcccCCCccccHHHHHHHHHH-----HHHHHHHcC
Confidence 99999999762 11334444444 555655544
No 161
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.44 E-value=6.5e-13 Score=107.52 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=88.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|++|||||||++.|+|... .. ....+.+.......+.+ ++. .+.++||+|...... ..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~-~~-~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~-----------~~ 71 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEF-NL-ESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRR-----------IT 71 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC-CC----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTC-----------CC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC-CC-CCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhh-----------hh
Confidence 6999999999999999999998753 11 11111222222333344 443 567899999543211 11
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...+++++|+|+....+... ..++..+...... ..++++++||+|+........++ ...+....
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~~~~~~~~---------a~~l~~~~ 140 (199)
T 2f9l_A 72 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTDE---------ARAFAEKN 140 (199)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHH---------HHHHHHHT
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccCcCHHH---------HHHHHHHc
Confidence 112245789999999873322222 1233333332211 23889999999986431011111 22333333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+. .+++ +|+.++.++.++++.+...+.
T Consensus 141 ~~--~~~d----~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 141 NL--SFIE----TSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp TC--EEEE----CCTTTCTTHHHHHHHHHHHHH
T ss_pred CC--eEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 32 2222 577788899999988776653
No 162
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.43 E-value=8.8e-13 Score=111.24 Aligned_cols=151 Identities=19% Similarity=0.235 Sum_probs=86.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCC-----CCCce-eeEeEEEEeeC--CcEEEEEeCCCCCCCCCCh---HH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTK-TCEMKTTVLKD--GQVVNVIDTPGLFDLSAGS---EF 88 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~-----~~~t~-~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~---~~ 88 (363)
.+|+|+|+||||||||+|+|+|......+... ...+. ...+..+.... ...++++|++|++...... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 58999999999999999999987652211100 00011 11122221111 2367899999997643211 11
Q ss_pred HHH----HHHHHHh----------ccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcc
Q 017924 89 VGK----EIVKCLG----------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (363)
Q Consensus 89 ~~~----~~~~~~~----------~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~ 153 (363)
+.. .+..... ....+++++++++|.. +.++..+...++.+... .++++|+||+|.++.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~- 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL- 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH-
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH-
Confidence 222 1222111 1123458888888753 68888887666666542 289999999999977
Q ss_pred hhhHHHHhccCCCchHHHHHHhcCCceEEe
Q 017924 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLF 183 (363)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (363)
..+..+... +...+...+...+.+
T Consensus 156 -~e~~~~k~~-----i~~~l~~~~i~i~~~ 179 (270)
T 3sop_A 156 -EEKSEFKQR-----VRKELEVNGIEFYPQ 179 (270)
T ss_dssp -HHHHHHHHH-----HHHHHHHTTCCCSSC
T ss_pred -HHHHHHHHH-----HHHHHHHcCccccCC
Confidence 666666666 665566655554443
No 163
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.8e-13 Score=109.13 Aligned_cols=130 Identities=11% Similarity=0.122 Sum_probs=71.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|..|+|||||+|.|++...... ......++.. .+ .+..+.++||||....... +...+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~-~~~~~~~~~~-----~~-~~~~~~l~Dt~G~~~~~~~---~~~~~~~- 114 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAA-----DY-DGSGVTLVDFPGHVKLRYK---LSDYLKT- 114 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCC---HHHHHHH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc-cccCCCceee-----ee-cCCeEEEEECCCCchHHHH---HHHHHHh-
Confidence 4457999999999999999999997653111 0011111111 11 4556779999998764321 1112222
Q ss_pred HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhcc-----ccccceEEEEeCCCCCCcchhhHHHHhcc
Q 017924 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK-----NVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
....+|++++|+|++ .-...-.....++...+.. ....|+++|+||+|+... ....+....
T Consensus 115 ---~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~ 180 (193)
T 2ged_A 115 ---RAKFVKGLIFMVDST-VDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA--RPPSKIKDA 180 (193)
T ss_dssp ---HGGGEEEEEEEEETT-CCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC--CCHHHHHHH
T ss_pred ---hcccCCEEEEEEECC-CCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC--CCHHHHHHH
Confidence 223579999999986 1111111222222222210 112389999999999866 444444333
No 164
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.15 E-value=1.1e-14 Score=118.61 Aligned_cols=165 Identities=15% Similarity=0.016 Sum_probs=89.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEe-EEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
....+|+|+|..|+|||||++.|++... .. ....|+...+ ..+... ....+.++||||.... .
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~---~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~ 92 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF-PG---EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-----------D 92 (204)
Confidence 4458999999999999999999986543 11 1111211111 111221 2345669999996542 1
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhcc-----CCCc
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH-----ECPK 167 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~-----~~~~ 167 (363)
......+..+|++++|+|+++..+..+. .++..+..... ..++++|+||+|+... ....+.+.. ....
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~v~~~ 167 (204)
T 3th5_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP 167 (204)
Confidence 2222334578999999998743332222 33444443322 2389999999998754 211111110 0000
Q ss_pred hHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
....+....+. ......|++.+.++.++++.|.+
T Consensus 168 ~~~~~~~~~~~-----~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 168 QGLAMAKEIGA-----VKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 01111111111 12235688888899888887654
No 165
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.42 E-value=1.7e-12 Score=113.82 Aligned_cols=164 Identities=16% Similarity=0.105 Sum_probs=94.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeE-EEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
..+|+|+|..|+|||||++.+++... ......|+...+. .+.. ++. .+.++||||.... ..
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~ 218 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAF----PGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDY-----------DR 218 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC----CCSCCCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGG-----------TT
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCC----CcccCCcccceeEEEEEE-CCEEEEEEEEeCCCchhh-----------hH
Confidence 47999999999999999999986543 1111222222222 2233 444 4559999996542 12
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHH--HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc---cCC-CchH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG---HEC-PKPL 169 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~---~~~-~~~~ 169 (363)
.....+..+|++++|+|+++..+..+. .++..+..... ..|+++|.||+|+.... ...+.+.. ... ....
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTCH-HHHHHHHHTTCCCCCHHHH
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhccccc-chhhhccccccccccHHHH
Confidence 233445688999999998733332222 23344444332 23899999999986441 11111110 000 1112
Q ss_pred HHHHHhcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 170 KEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+....+. .++ .+|++.+.++.++++.+...+
T Consensus 295 ~~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 295 LAMAKEIGAVKYL------ECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEE------EecCCCCcCHHHHHHHHHHHH
Confidence 233333333 222 567888899999999887654
No 166
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.41 E-value=1.8e-12 Score=104.24 Aligned_cols=161 Identities=19% Similarity=0.201 Sum_probs=85.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc-cccccCCCCCceeeEeEEEEeeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
..+|+|||.+|+|||||+|.++|... |..... +.+.+.....+.+ ++. .+.++||+|..... ..+.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~-------~~~~- 74 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE--VLGEDTYERTLMV-DGESATIILLDMWENKGEN-------EWLH- 74 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----G--GGCTTEEEEEEEE-TTEEEEEEEECCCCC-----------CTTG-
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc--ccceeEEEEEEEE-CCeEEEEEEEEeccCcchh-------hhHH-
Confidence 47999999999999999999997432 221111 1111111222333 443 45689999854310 0011
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHH
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~ 174 (363)
...+...+++++|++++++-+-... .++..+...... ...++++|.||+|+........++ ...+..
T Consensus 75 --~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~~r~v~~~~---------~~~~a~ 142 (192)
T 2cjw_A 75 --DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRXREVSVSE---------GRAXAV 142 (192)
T ss_dssp --GGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred --HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhccccccHHH---------HHHHHH
Confidence 1122346899999998733322222 233334433211 123899999999986430011111 111122
Q ss_pred hcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..+..++ .+|++.+.++.++++.+...+
T Consensus 143 ~~~~~~~------e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 143 VFDXKFI------ETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp HTTCEEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred HhCCceE------EeccccCCCHHHHHHHHHHHH
Confidence 2222232 568888999999998876654
No 167
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.40 E-value=1.4e-12 Score=118.63 Aligned_cols=139 Identities=16% Similarity=0.204 Sum_probs=83.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc-cccc-------------c---------------cCCCCCceeeEeEEEEeeCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK-AFKA-------------S---------------AGSSGVTKTCEMKTTVLKDG 68 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~-~~~~-------------~---------------~~~~~~t~~~~~~~~~~~~~ 68 (363)
...+|+++|+.|+|||||+|.|++.. .+.. + ....+.|+......+.. .+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CC
Confidence 34799999999999999999998642 1100 0 00123454444444444 67
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCH-------HHHHHHHHHHHHhccccccceE
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQ-------EEETAVHRLPNLFGKNVFDYMI 141 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~i 141 (363)
..++|+||||..+ +...+..++..+|++++|+|+++.... .....+..+.. .+- .+++
T Consensus 85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v---~~ii 149 (458)
T 1f60_A 85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGV---RQLI 149 (458)
T ss_dssp EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTC---CEEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCC---CeEE
Confidence 7899999999653 333344456789999999998722111 22233332222 222 2488
Q ss_pred EEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcC
Q 017924 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (363)
Q Consensus 142 ~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 177 (363)
+++||+|+...+...++..... +..++...+
T Consensus 150 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g 180 (458)
T 1f60_A 150 VAVNKMDSVKWDESRFQEIVKE-----TSNFIKKVG 180 (458)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHT
T ss_pred EEEEccccccCCHHHHHHHHHH-----HHHHHHHcC
Confidence 9999999874222444444444 555555444
No 168
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.40 E-value=1.7e-12 Score=104.27 Aligned_cols=157 Identities=17% Similarity=0.165 Sum_probs=87.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcE--EEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
.+|+|+|++|||||||++.|+|.... .....+++.......+.+ ++.. +.++||+|....... +
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~--~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~-----------~ 95 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFN--LESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAI-----------T 95 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCC--CSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCC-----------C
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhh-----------h
Confidence 69999999999999999999987541 111122222222333344 5543 456999997643211 1
Q ss_pred hccCCCccEEEEEeecCCCCCHHH-HHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
...+...+++++|+|.....+... ..++..+..... ...++++++||+|+......... . ...+....
T Consensus 96 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~~~~~----~-----a~~l~~~~ 164 (191)
T 1oix_A 96 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTD----E-----ARAFAEKN 164 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHH----H-----HHHHHHHT
T ss_pred HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHH----H-----HHHHHHHc
Confidence 112235678899999762211111 122333333221 12378999999998642101111 1 22333333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 207 (363)
+. .+++ +|+.++.++.++++.+.+.
T Consensus 165 ~~--~~ld----~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 165 GL--SFIE----TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp TC--EEEE----CCTTTCTTHHHHHHHHHHH
T ss_pred CC--EEEE----EeCCCCCCHHHHHHHHHHH
Confidence 32 2332 5777888999998887654
No 169
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.39 E-value=1e-12 Score=121.87 Aligned_cols=137 Identities=20% Similarity=0.312 Sum_probs=78.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceee-EeEE---------------------------------
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC-EMKT--------------------------------- 62 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~-~~~~--------------------------------- 62 (363)
....+|+|+|..|+|||||+|+|+|........+....|... .+..
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 345799999999999999999999886421011111122110 0000
Q ss_pred ---EEeeCC---cEEEEEeCCCCCCCCCChHHHHHH--HHHHHhccCCCccEEEEEeecCC-CCCHHHHHHHHHHHHHhc
Q 017924 63 ---TVLKDG---QVVNVIDTPGLFDLSAGSEFVGKE--IVKCLGMAKDGIHAFLVVFSVTN-RFSQEEETAVHRLPNLFG 133 (363)
Q Consensus 63 ---~~~~~~---~~~~l~DtpG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~v~~~~~-~~~~~~~~~l~~~~~~~~ 133 (363)
..+ .+ ..++||||||+.+.... .+.+. +...+......+|++++|+|+++ .+...+..++..+...
T Consensus 143 ~~~~~~-~~~ll~~l~lIDTPG~~~~~~~--~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-- 217 (550)
T 2qpt_A 143 FMCAQL-PNQVLESISIIDTPGILSGAKQ--RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH-- 217 (550)
T ss_dssp EEEEEC-CCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--
T ss_pred ceEEec-cccccCCEEEEECcCCCCcchh--HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--
Confidence 000 00 35789999998762110 00000 11222222346799999999974 3566666665554321
Q ss_pred cccccceEEEEeCCCCCCcchhhHHHHhcc
Q 017924 134 KNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (363)
Q Consensus 134 ~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~ 163 (363)
..++++|+||+|.... ..+......
T Consensus 218 ---~~pvilVlNK~Dl~~~--~el~~~~~~ 242 (550)
T 2qpt_A 218 ---EDKIRVVLNKADMVET--QQLMRVYGA 242 (550)
T ss_dssp ---GGGEEEEEECGGGSCH--HHHHHHHHH
T ss_pred ---CCCEEEEEECCCccCH--HHHHHHHHH
Confidence 1389999999999865 555554443
No 170
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.39 E-value=2.7e-12 Score=119.65 Aligned_cols=114 Identities=17% Similarity=0.205 Sum_probs=74.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEee-----------------CCcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~l~DtpG~~~~ 82 (363)
.+|+|+|+.|+|||||++.|++..... ...++.|.........+. ....++|+||||..+.
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~--~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCcc--ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 699999999999999999999764311 111223322222222110 1125899999998664
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCC
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~ 151 (363)
.. ....+...+|++++|+|+++.+.......+..+... + .|+++++||+|+..
T Consensus 84 ~~-----------~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~-~----vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 84 TT-----------LRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-R----TPFVVAANKIDRIH 136 (594)
T ss_dssp TT-----------SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CCEEEEEECGGGST
T ss_pred HH-----------HHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc-C----CeEEEEeccccccc
Confidence 21 122345578999999999877777777777665542 2 28999999999864
No 171
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.39 E-value=1.3e-12 Score=121.60 Aligned_cols=161 Identities=19% Similarity=0.206 Sum_probs=91.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc-ccc-----c-------cCCCCCceeeEeEEEEee--C--CcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA-FKA-----S-------AGSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~-~~~-----~-------~~~~~~t~~~~~~~~~~~--~--~~~~~l~DtpG~~~~ 82 (363)
.+|+|+|+.|+|||||++.|++... +.. . ....++|+......+.|. + +..++|+||||..+.
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 6899999999999999999975321 000 0 001233444333444442 1 367899999997652
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~ 162 (363)
..++.+.+ ..+|++++|+|+++.........+..+... + .++++|+||+|+... . .+....
T Consensus 85 -------~~ev~~~l----~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-~----ipiIvViNKiDl~~a--~-~~~v~~ 145 (599)
T 3cb4_D 85 -------SYEVSRSL----AACEGALLVVDAGQGVEAQTLANCYTAMEM-D----LEVVPVLNKIDLPAA--D-PERVAE 145 (599)
T ss_dssp -------HHHHHHHH----HHCSEEEEEEETTTCCCTHHHHHHHHHHHT-T----CEEEEEEECTTSTTC--C-HHHHHH
T ss_pred -------HHHHHHHH----HHCCEEEEEEECCCCCCHHHHHHHHHHHHC-C----CCEEEeeeccCcccc--c-HHHHHH
Confidence 22333333 346999999999867666666655544432 2 289999999999754 1 222222
Q ss_pred cCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
. +... ++.. .......|+..+.++.+|++.+...+..
T Consensus 146 e-----i~~~---lg~~---~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 146 E-----IEDI---VGID---ATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp H-----HHHH---TCCC---CTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred H-----HHHH---hCCC---cceEEEeecccCCCchhHHHHHhhcCCC
Confidence 2 2222 2211 0123456888899999999988776643
No 172
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.38 E-value=6.9e-12 Score=107.74 Aligned_cols=170 Identities=16% Similarity=0.149 Sum_probs=77.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCC-----CCCceeeEeEEEEee-C--CcEEEEEeCCCCCCCCCC---hHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDLSAG---SEF 88 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~~-~--~~~~~l~DtpG~~~~~~~---~~~ 88 (363)
.+|+|+|+||||||||+|.|+|...+...... ...+.......+... . ...++++||+|++..... ...
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~ 98 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT 98 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHH
Confidence 68999999999999999999987433211100 001111111111111 1 347889999998542110 011
Q ss_pred HHHHH----HHHHh---------ccCCCccEEEEEeecC-CCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcch
Q 017924 89 VGKEI----VKCLG---------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE 154 (363)
Q Consensus 89 ~~~~~----~~~~~---------~~~~~~~~~l~v~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~ 154 (363)
+...+ ...+. ....++++++|+++.+ +.+...+. +.+..+.. . .++++|+||.|....
T Consensus 99 l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~---~~l~~l~~-~--~~iilV~~K~Dl~~~-- 170 (301)
T 2qnr_A 99 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAIHN-K--VNIVPVIAKADTLTL-- 170 (301)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH---HHHHHHTT-T--SCEEEEECCGGGSCH--
T ss_pred HHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH---HHHHHHHh-c--CCEEEEEEeCCCCCH--
Confidence 22211 11111 1112456677777754 34777664 33444322 2 279999999998865
Q ss_pred hhHHHHhccCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 155 KTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 155 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
..+..+... ....+...+..++ ..|+..+ ++++++..+...+.
T Consensus 171 ~e~~~~~~~-----~~~~~~~~~~~~~------e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 171 KERERLKKR-----ILDEIEEHNIKIY------HLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHH-----HHHHHHHTTCCCC------CCC----------CHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHcCCeEE------ecCCccc-cccHHHHHHHHHhh
Confidence 444333333 4444554443332 4566677 78888777666553
No 173
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.38 E-value=1.8e-12 Score=120.46 Aligned_cols=160 Identities=16% Similarity=0.212 Sum_probs=94.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc-cccc------------cCCCCCceeeEeEEEEee--C--CcEEEEEeCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA-FKAS------------AGSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLFDL 82 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~-~~~~------------~~~~~~t~~~~~~~~~~~--~--~~~~~l~DtpG~~~~ 82 (363)
.+|+|+|+.|+|||||++.|++... +... ....++|+......+.+. + ...++|+||||..+.
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 6899999999999999999975321 0000 001223433333333332 1 257889999997663
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhc
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~ 162 (363)
..++.+. ...+|++++|+|+++.........+..+... + .++++++||+|+... . .+....
T Consensus 87 -------~~ev~r~----l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~-~----ipiIvviNKiDl~~a--~-~~~v~~ 147 (600)
T 2ywe_A 87 -------SYEVSRA----LAACEGALLLIDASQGIEAQTVANFWKAVEQ-D----LVIIPVINKIDLPSA--D-VDRVKK 147 (600)
T ss_dssp -------HHHHHHH----HHTCSEEEEEEETTTBCCHHHHHHHHHHHHT-T----CEEEEEEECTTSTTC--C-HHHHHH
T ss_pred -------HHHHHHH----HHhCCEEEEEEECCCCccHHHHHHHHHHHHC-C----CCEEEEEeccCcccc--C-HHHHHH
Confidence 2233333 2467999999999867776666665554432 2 279999999998754 1 222222
Q ss_pred cCCCchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
. +...++.. .......|+..+.++.+|++.+...+.
T Consensus 148 e--------l~~~lg~~---~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 148 Q--------IEEVLGLD---PEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp H--------HHHTSCCC---GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred H--------HHHhhCCC---cccEEEEEeecCCCchHHHHHHHHhcc
Confidence 2 22222211 012346788899999999998877664
No 174
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.37 E-value=1.5e-11 Score=120.18 Aligned_cols=165 Identities=19% Similarity=0.210 Sum_probs=95.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc------ccc----c----cCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA------FKA----S----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~------~~~----~----~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (363)
....+|+|+|+.|+|||||++.|++... |.. . ....++|+......+.. .+..++|+||||..
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHe-- 370 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHA-- 370 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHH--
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChH--
Confidence 4557999999999999999999986421 000 0 01122333332222333 56789999999943
Q ss_pred CCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccc-eEEEEeCCCCCCcchhhHHHHh
Q 017924 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL 161 (363)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~i~v~n~~D~~~~~~~~l~~~~ 161 (363)
.+...+...+..+|++++|+|+++.........+..+... +- + +++++||+|+... ...++...
T Consensus 371 ---------dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l-gI----P~IIVVINKiDLv~d-~e~le~i~ 435 (1289)
T 3avx_A 371 ---------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-GV----PYIIVFLNKCDMVDD-EELLELVE 435 (1289)
T ss_dssp ---------HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH-TC----SCEEEEEECCTTCCC-HHHHHHHH
T ss_pred ---------HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc-CC----CeEEEEEeecccccc-hhhHHHHH
Confidence 3444455566789999999999866555556666555432 32 5 7889999999853 12233333
Q ss_pred ccCCCchHHHHHHhcCC---ceEEecCCCcccccch--------hHHHHHHHHHHHHH
Q 017924 162 GHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGT--------EQVRQLLSLVNSVI 208 (363)
Q Consensus 162 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~~ 208 (363)
.. +..++...+. ...+ ...|+..+ .++.+|++.|...+
T Consensus 436 eE-----i~elLk~~G~~~~~vp~----IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 436 ME-----VRELLSQYDFPGDDTPI----VRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp HH-----HHHHHHHTTSCTTTCCE----EECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HH-----HHHHHHhccccccceeE----EEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 33 4445544431 1111 13455555 45666766665543
No 175
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.37 E-value=4.4e-14 Score=128.42 Aligned_cols=160 Identities=14% Similarity=0.172 Sum_probs=95.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHh
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (363)
..+|+|+|+.|+|||||++.|++.... . ...++.|.....+.+.+ ++..++|+||||..+.. ....
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~-~-~e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~-----------~~~~ 69 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVA-S-GEAGGITQHIGAYHVET-ENGMITFLDTPGHAAFT-----------SMRA 69 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHS-B-TTBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCT-----------TSBC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCc-c-ccCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHH-----------HHHH
Confidence 369999999999999999999865431 1 11233444443334444 56788999999976532 1223
Q ss_pred ccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
.....+|++++|+|+++.........+..+.. .+ .|+++++||+|+...+...+...+.. ...+...++.
T Consensus 70 ~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~-~~----vPiIVviNKiDl~~~~~~~v~~~l~~-----~~~~~~~~~~ 139 (501)
T 1zo1_I 70 RGAQATDIVVLVVAADDGVMPQTIEAIQHAKA-AQ----VPVVVAVNKIDKPEADPDRVKNELSQ-----YGILPEEWGG 139 (501)
T ss_dssp SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH-TT----CCEEEEEECSSSSTTCCCCTTCCCCC-----CCCCTTCCSS
T ss_pred HHHhhCCEEEEEeecccCccHHHHHHHHHHHh-cC----ceEEEEEEeccccccCHHHHHHHHHH-----hhhhHHHhCC
Confidence 44567899999999875554444555544433 22 28999999999864311111111111 0000011111
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHH
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 206 (363)
... ....|+.++.++.+|++.+..
T Consensus 140 ~~~----~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 140 ESQ----FVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp SCE----EEECCTTTCTTCTTHHHHTTT
T ss_pred Ccc----EEEEeeeeccCcchhhhhhhh
Confidence 111 125688888999999988753
No 176
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.37 E-value=3.6e-12 Score=104.71 Aligned_cols=121 Identities=11% Similarity=0.165 Sum_probs=70.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (363)
....+|+|+|..|+|||||++.|++...... ......++... + ....+.++||||..... ..+..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-~~~~~~~~~~~-----~-~~~~~~l~Dt~G~~~~~-------~~~~~~ 75 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAAD-----Y-DGSGVTLVDFPGHVKLR-------YKLSDY 75 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEETT-----G-GGSSCEEEECCCCGGGT-------HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-eeecCceEEEE-----e-eCceEEEEECCCcHHHH-------HHHHHH
Confidence 3457999999999999999999997653111 11111111111 1 34567899999975421 122222
Q ss_pred HhccCCCccEEEEEeecC---CCCCHHHHHHHHHHHHHhc--cccccceEEEEeCCCCCCc
Q 017924 97 LGMAKDGIHAFLVVFSVT---NRFSQEEETAVHRLPNLFG--KNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~---~~~~~~~~~~l~~~~~~~~--~~~~~~~i~v~n~~D~~~~ 152 (363)
+......+|++++|+|++ ..+.... ..+..+..... .....|+++|.||+|+...
T Consensus 76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 76 LKTRAKFVKGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp HHHHGGGEEEEEEEEETTSCTTCCHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHhccccCCEEEEEEECCCChHHHHHHH-HHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 222223468999999987 2333322 23333322211 0112389999999999865
No 177
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.37 E-value=8.9e-12 Score=111.00 Aligned_cols=168 Identities=14% Similarity=0.114 Sum_probs=95.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (363)
..|+|||.|||||||||++|+|........ . ..|.......+.+.+...++++|+||+.........+...+.+.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~-~-ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~--- 232 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPY-P-FTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRH--- 232 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCC-T-TCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHH---
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCc-c-cceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHH---
Confidence 468999999999999999999875321111 1 11223334444442237889999999864210000011122222
Q ss_pred cCCCccEEEEEeecCCCCCHHHHHH-HHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhcCC
Q 017924 100 AKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 178 (363)
..+++.++++++++ +-...+... .+.+..+...-...|.++|+||+|.... ..++. +...+...+.
T Consensus 233 -~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~---------l~~~l~~~g~ 299 (416)
T 1udx_A 233 -IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKA---------LADALAREGL 299 (416)
T ss_dssp -HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHH---------HHHHHHTTTS
T ss_pred -HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHH---------HHHHHHhcCC
Confidence 24678999999986 222222221 2222221100012388999999998744 32222 2223322222
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHHHc
Q 017924 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 211 (363)
.++ ..|+..+.++.+|++.|...+...
T Consensus 300 ~vi------~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 300 AVL------PVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp CEE------ECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred eEE------EEECCCccCHHHHHHHHHHHHHhc
Confidence 233 457778899999999999888653
No 178
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.36 E-value=4.5e-12 Score=111.05 Aligned_cols=122 Identities=14% Similarity=0.177 Sum_probs=77.1
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (363)
..+|+|||.+|+|||||+|+|+|.... ....+ +|.+.....+.+ .+..+.|+||||+.............+...+
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~---v~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESE---AAEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCC---GGGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCc---ccCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 358999999999999999999987642 22222 444555555555 8889999999999754322223344444433
Q ss_pred hccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccc-cccceEEEEeCCCCC
Q 017924 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN-VFDYMIVVFTGGDDL 150 (363)
Q Consensus 98 ~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~i~v~n~~D~~ 150 (363)
..+|++++|+|+.+.+ .+...+..-...++.. ..++.++++||+|..
T Consensus 148 ----~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 148 ----RTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp ----HHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred ----HhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 3579999999986322 2333333323333322 223788899999864
No 179
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.34 E-value=2.1e-11 Score=106.86 Aligned_cols=113 Identities=14% Similarity=0.134 Sum_probs=57.7
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeC
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~ 146 (363)
.+..+.|+||+|+... .. .+ ...+|.+++|++++... +...+.. .++. .+.++|+||
T Consensus 165 ~~~~~iliDT~Gi~~~---~~----~l-------~~~~d~vl~V~d~~~~~---~~~~i~~--~il~----~~~ivVlNK 221 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EF----AV-------ADMVDMFVLLLPPAGGD---ELQGIKR--GIIE----MADLVAVTK 221 (349)
T ss_dssp TTCSEEEEECCCC--C---HH----HH-------HTTCSEEEEEECCC-----------------CC----SCSEEEECC
T ss_pred CCCCEEEEECCCcchh---hh----hH-------HhhCCEEEEEEcCCcch---hHHHhHH--HHHh----cCCEEEEee
Confidence 4567789999997642 11 11 23679999999986221 1111111 1122 268899999
Q ss_pred CCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEE-ecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL-FDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 147 ~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+|+... ......+.. +...+......... .......|+.++.++.+|++.|...+.
T Consensus 222 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 222 SDGDLI--VPARRIQAE-----YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CSGGGH--HHHHHHHHH-----HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ecCCCc--hhHHHHHHH-----HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 998743 222222222 22222111100000 001124688889999999999888764
No 180
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.34 E-value=1.6e-13 Score=128.30 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=76.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccccccccc-----------------------------CCCCCceeeEeEEEEeeC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASA-----------------------------GSSGVTKTCEMKTTVLKD 67 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~ 67 (363)
....+|+|+|+.|+|||||++.|++........ ...++|+......+.+ .
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-D 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-C
Confidence 445789999999999999999997532100000 0123344444444444 5
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCC-----C--CHHHHHHHHHHHHHhccccccce
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-----F--SQEEETAVHRLPNLFGKNVFDYM 140 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~~~~ 140 (363)
+..++|+||||..+.. ..+..+...+|++|+|+|++.. + .......+..+.. .+.. ++
T Consensus 254 ~~~i~iiDTPGh~~f~-----------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgip---~i 318 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFI-----------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGIS---EI 318 (592)
T ss_dssp -----CCEEESSSEEE-----------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSCC---CE
T ss_pred CeEEEEEECCChHHHH-----------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCC---eE
Confidence 6788999999976521 1122334568999999998732 2 3444444444433 3321 48
Q ss_pred EEEEeCCCCCCcchhhHHHHhccCCCchHHHHH-HhcCCc---eEEecCCCcccccchhHHH
Q 017924 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCDNR---CVLFDNKTKDEAKGTEQVR 198 (363)
Q Consensus 141 i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~ 198 (363)
++|+||+|+...+...++..... +..++ ...+.. ..+ ...|+..+.++.
T Consensus 319 IvviNKiDl~~~~~~~~~~i~~e-----l~~~l~~~~g~~~~~~~i----i~iSA~~G~gI~ 371 (592)
T 3mca_A 319 VVSVNKLDLMSWSEDRFQEIKNI-----VSDFLIKMVGFKTSNVHF----VPISAISGTNLI 371 (592)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHH-----HHHHHTTTSCCCGGGEEE----EEECSSSCSSSC
T ss_pred EEEEeccccccccHHHHHHHHHH-----HHHHHHHhhCCCccceEE----EEEecccCcccc
Confidence 89999999875322445545444 55555 333321 111 245666676665
No 181
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.33 E-value=1.3e-11 Score=114.43 Aligned_cols=117 Identities=20% Similarity=0.288 Sum_probs=82.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhh---ccc-----------------ccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL---GRK-----------------AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~---g~~-----------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG 78 (363)
-++|+|||+.++|||||..+|+ |.. .+....-..++|+......+.| +++.++||||||
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPG 109 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTPG 109 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCCC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCCC
Confidence 3799999999999999999885 111 1111122345666666677778 899999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..|+. .+..+.+. -+|++++|+|+...........++.+.+. + .|.++++||+|....
T Consensus 110 HvDF~-------~Ev~raL~----~~DgAvlVvda~~GV~~qT~~v~~~a~~~-~----lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 110 HQDFS-------EDTYRVLT----AVDSALVVIDAAKGVEAQTRKLMDVCRMR-A----TPVMTFVNKMDREAL 167 (548)
T ss_dssp GGGCS-------HHHHHHHH----SCSEEEEEEETTTBSCHHHHHHHHHHHHT-T----CCEEEEEECTTSCCC
T ss_pred cHHHH-------HHHHHHHH----hcCceEEEeecCCCcccccHHHHHHHHHh-C----CceEEEEecccchhc
Confidence 88863 34444443 46999999999878888888888777654 2 289999999998765
No 182
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.32 E-value=2.2e-11 Score=106.66 Aligned_cols=113 Identities=10% Similarity=0.100 Sum_probs=62.4
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeC
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~ 146 (363)
.+..++|+||||+.+. .. .+ ...+|++++|++++.. . ....+.. ...+ .+.++|+||
T Consensus 147 ~~~~i~liDTpG~~~~---~~----~~-------~~~aD~vl~Vvd~~~~-~--~~~~l~~--~~~~----~p~ivv~NK 203 (341)
T 2p67_A 147 AGYDVVIVETVGVGQS---ET----EV-------ARMVDCFISLQIAGGG-D--DLQGIKK--GLME----VADLIVINK 203 (341)
T ss_dssp TTCSEEEEEEECCTTH---HH----HH-------HTTCSEEEEEECC---------CCCCH--HHHH----HCSEEEECC
T ss_pred cCCCEEEEeCCCccch---HH----HH-------HHhCCEEEEEEeCCcc-H--HHHHHHH--hhhc----ccCEEEEEC
Confidence 4667899999998752 11 11 2478999999997621 1 1111110 1111 278999999
Q ss_pred CCCCCcchhhHHHHhccCCCchHHHHHHhcCCceE-EecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV-LFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 147 ~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
+|.... ..+...+.. +...+........ .+......|+..+.++.+|++.|.+.+.
T Consensus 204 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 204 DDGDNH--TNVAIARHM-----YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCTTCH--HHHHHHHHH-----HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCCCh--HHHHHHHHH-----HHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 998754 333333333 3333332221000 0011235688889999999999888664
No 183
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.32 E-value=1.3e-12 Score=121.74 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=88.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEE--------EEee---CCcEEEEEeCCCCCCCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--------TVLK---DGQVVNVIDTPGLFDLSAG 85 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~--------~~~~---~~~~~~l~DtpG~~~~~~~ 85 (363)
....+|+|||.+|||||||+|.|++... . .....|+...+.. +... .+..+.++||||.......
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~-~---~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~ 114 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETF-D---PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS 114 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC---------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCC-C---CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH
Confidence 3458999999999999999999997653 1 1111121111111 1111 2467899999996543221
Q ss_pred hHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCC
Q 017924 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC 165 (363)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~ 165 (363)
. .. +....+++++|+|++ .. .....++..+..... + .|+++|.||+|+........++
T Consensus 115 ~----~~-------~l~~~d~ii~V~D~s-~~-~~~~~~~~~l~~~~~-~--~pvilV~NK~Dl~~~~~v~~~~------ 172 (535)
T 3dpu_A 115 H----QF-------FMTRSSVYMLLLDSR-TD-SNKHYWLRHIEKYGG-K--SPVIVVMNKIDENPSYNIEQKK------ 172 (535)
T ss_dssp C----HH-------HHHSSEEEEEEECGG-GG-GGHHHHHHHHHHHSS-S--CCEEEEECCTTTCTTCCCCHHH------
T ss_pred H----HH-------HccCCcEEEEEEeCC-Cc-hhHHHHHHHHHHhCC-C--CCEEEEEECCCcccccccCHHH------
Confidence 1 11 123579999999987 33 333455566655433 2 3899999999987541111111
Q ss_pred CchHHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+.......+..++ .+|+.++.++.+|++.+...+..
T Consensus 173 ---~~~~~~~~~~~~~------~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 173 ---INERFPAIENRFH------RISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp ---HHHHCGGGTTCEE------ECCC-----CTTHHHHHHHHHTC
T ss_pred ---HHHHHHhcCCceE------EEecCcccCHHHHHHHHHHHHhc
Confidence 2223333333333 56788889999999998887754
No 184
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.32 E-value=4.4e-12 Score=115.71 Aligned_cols=119 Identities=17% Similarity=0.162 Sum_probs=65.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc-cc------------------------cc----cCCCCCceeeEeEEEEeeC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FK------------------------AS----AGSSGVTKTCEMKTTVLKD 67 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~-~~------------------------~~----~~~~~~t~~~~~~~~~~~~ 67 (363)
....+|+++|+.|+|||||++.|++... +. .+ ....+.|+......+.+ +
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence 3457999999999999999999864211 00 00 00123454444444444 6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCC-------HHHHHHHHHHHHHhccccccce
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS-------QEEETAVHRLPNLFGKNVFDYM 140 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~ 140 (363)
+..++|+||||..+ +...+...+..+|++++|+|+++... ...+..+..+.. .+- .++
T Consensus 120 ~~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v---p~i 184 (467)
T 1r5b_A 120 HRRFSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI---NHL 184 (467)
T ss_dssp SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC---SSE
T ss_pred CeEEEEEECCCcHH-----------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC---CEE
Confidence 78899999999654 22333344567899999999874320 122333333322 232 138
Q ss_pred EEEEeCCCCCC
Q 017924 141 IVVFTGGDDLE 151 (363)
Q Consensus 141 i~v~n~~D~~~ 151 (363)
++++||+|+..
T Consensus 185 ivviNK~Dl~~ 195 (467)
T 1r5b_A 185 VVVINKMDEPS 195 (467)
T ss_dssp EEEEECTTSTT
T ss_pred EEEEECccCCC
Confidence 89999999964
No 185
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.31 E-value=7.7e-12 Score=110.24 Aligned_cols=114 Identities=17% Similarity=0.073 Sum_probs=65.0
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeC
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~ 146 (363)
.+..+.|+||||+... . ..+ ...+|++++|++.+ ..... ..+.... ...++++|+||
T Consensus 170 ~~~~~iiiDTpGi~~~---~----~~~-------~~~aD~vl~V~d~~-~~~~~-----~~l~~~~---~~~p~ivVlNK 226 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---E----VAV-------ANMVDTFVLLTLAR-TGDQL-----QGIKKGV---LELADIVVVNK 226 (355)
T ss_dssp TTCCEEEEEECSCSSH---H----HHH-------HTTCSEEEEEEESS-TTCTT-----TTCCTTS---GGGCSEEEEEC
T ss_pred CCCCEEEEeCCCCCcH---H----HHH-------HHhCCEEEEEECCC-CCccH-----HHHHHhH---hhcCCEEEEEC
Confidence 3567889999997641 1 011 14679999999976 21110 1111100 11288999999
Q ss_pred CCCCCcchhhHHHHhccCCCchHHHHHHhcCCceEEe-cCCCcccccchhHHHHHHHHHHHHHHH
Q 017924 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (363)
Q Consensus 147 ~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~ 210 (363)
+|.... ......... +...+.........+ ......|+.++.++.+|++.|...+..
T Consensus 227 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 227 ADGEHH--KEARLAARE-----LSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CCGGGH--HHHHHHHHH-----HHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCCcCh--hHHHHHHHH-----HHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 998754 334333333 443333222100000 112357888999999999999887654
No 186
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.31 E-value=1.3e-11 Score=109.88 Aligned_cols=89 Identities=16% Similarity=0.117 Sum_probs=45.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEe--------------------eC---CcEEEEEe
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVL--------------------KD---GQVVNVID 75 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~--------------------~~---~~~~~l~D 75 (363)
.+|+|||.+|+|||||+|+|+|... . .+..+ .|.........+ .+ ...+.|+|
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~--~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvD 77 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV-E--IANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVD 77 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC-----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-c--ccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEE
Confidence 3799999999999999999998762 1 11111 122111111100 01 24688999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCC
Q 017924 76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN 115 (363)
Q Consensus 76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~ 115 (363)
|||+...... .+.+...+......+|++++|+|+++
T Consensus 78 tpG~~~~a~~----~~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 78 VAGLVPGAHE----GRGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp CC-------------------CCCSSTTCSEEEEEEETTC
T ss_pred CCCcccchhh----hhhHHHHHHHHHhcCCEEEEEEeccc
Confidence 9998642110 12233333455678999999999873
No 187
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.30 E-value=1e-11 Score=114.45 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=73.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccc---c----------c-------CCCCCceeeEeEEEEeeCCcEEEEEeCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA---S----------A-------GSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~---~----------~-------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG 78 (363)
..+|+|+|+.|+|||||++.|++...... . . ...+.|+......+.+ .+..++|+||||
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTPG 91 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTPG 91 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECCC
Confidence 47999999999999999999985421000 0 0 0111222222333444 678899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+.. ....+ ++..+|++++|+|++..........+..+.. . . .++++++||+|....
T Consensus 92 ~~df~-------~~~~~----~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~-~--~--ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 92 HEDFS-------EDTYR----TLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL-R--D--TPILTFMNKLDRDIR 149 (529)
T ss_dssp STTCC-------HHHHH----GGGGCSEEEEEEETTTCSCHHHHHHHHHHTT-T--T--CCEEEEEECTTSCCS
T ss_pred ChhHH-------HHHHH----HHHHCCEEEEEEeCCccchHHHHHHHHHHHH-c--C--CCEEEEEcCcCCccc
Confidence 87642 12222 3346799999999986665555444443322 1 2 289999999999765
No 188
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.28 E-value=3.5e-11 Score=114.36 Aligned_cols=117 Identities=26% Similarity=0.276 Sum_probs=78.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccccc---cccc------C-------CCCCceeeEeEEEEeeCCcEEEEEeCCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAF---KASA------G-------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~---~~~~------~-------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 80 (363)
....+|+|+|++|+|||||++.|++.... .+.. . ...++.......+.+ .+..++++||||..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYG 85 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCcc
Confidence 34579999999999999999999854321 0000 0 012344444444455 67889999999976
Q ss_pred CCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCC
Q 017924 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~ 150 (363)
+. ...+...+ ..+|++++|+|+...+.......+..+... + .++++++||+|..
T Consensus 86 ~f-------~~~~~~~l----~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-~----ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DF-------VGEIRGAL----EAADAALVAVSAEAGVQVGTERAWTVAERL-G----LPRMVVVTKLDKG 139 (665)
T ss_dssp GG-------HHHHHHHH----HHCSEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCEEEEEECGGGC
T ss_pred ch-------HHHHHHHH----hhcCcEEEEEcCCcccchhHHHHHHHHHHc-c----CCEEEEecCCchh
Confidence 52 12233332 346899999998777877777776666542 2 2899999999987
No 189
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.27 E-value=1.2e-11 Score=117.89 Aligned_cols=118 Identities=25% Similarity=0.358 Sum_probs=77.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc-cc--cccC-------------CCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA-FK--ASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~-~~--~~~~-------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
.-.+|+|+|+.|+|||||+|.|++... +. .... ....|+......+.+ ++..++|+||||+.+
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d 87 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHVD 87 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCcc
Confidence 447999999999999999999984321 00 0000 112333333444455 678899999999876
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
.. ....+.+ ..+|++++|+|+.+.........+..+... + .++++|+||+|+...
T Consensus 88 f~-------~~~~~~l----~~aD~~llVvDa~~g~~~~~~~~~~~~~~~-~----~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 FT-------VEVERSL----RVLDGAVTVLDAQSGVEPQTETVWRQATTY-G----VPRIVFVNKMDKLGA 142 (693)
T ss_dssp CC-------HHHHHHH----HHCSEEEEEEETTTBSCHHHHHHHHHHHHT-T----CCEEEEEECTTSTTC
T ss_pred hH-------HHHHHHH----HHCCEEEEEECCCCCCcHHHHHHHHHHHHc-C----CCEEEEEECCCcccc
Confidence 42 1222222 247999999999867777777777665542 2 289999999998754
No 190
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.25 E-value=2.9e-11 Score=115.29 Aligned_cols=118 Identities=21% Similarity=0.271 Sum_probs=76.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc-c--ccccC-------------CCCCceeeEeEEEEeeCCcEEEEEeCCCCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA-F--KASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~-~--~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (363)
...+|+|+|+.|+|||||++.|+.... + ..... ....|+......+.+ .+..++|+||||..+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG~~d 89 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPGHVD 89 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCSSTT
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcCccc
Confidence 447999999999999999999983211 0 00000 123444444445555 678899999999866
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
. .....+.+ ..+|++++|+|+++.........+..+... + .++++|+||+|....
T Consensus 90 f-------~~~~~~~l----~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-~----~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 F-------TIEVERSM----RVLDGAIVVFDSSQGVEPQSETVWRQAEKY-K----VPRIAFANKMDKTGA 144 (691)
T ss_dssp C-------HHHHHHHH----HHCSEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCEEEEEECTTSTTC
T ss_pred h-------HHHHHHHH----HHCCEEEEEEECCCCcchhhHHHHHHHHHc-C----CCEEEEEECCCcccC
Confidence 3 12233332 246999999999867777776666655442 2 289999999998755
No 191
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.24 E-value=9.8e-11 Score=102.08 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=58.6
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHH-HHHHHHhccccccceEEEEe
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV-HRLPNLFGKNVFDYMIVVFT 145 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~i~v~n 145 (363)
.+..+.|+||+|+... ... + ...+|.++++++.+ .. .+...+ ..+... +.++++|
T Consensus 146 ~~~~~iliDT~Gi~~~---~~~----v-------~~~~d~vl~v~d~~-~~--~~~~~i~~~i~~~-------~~ivvlN 201 (337)
T 2qm8_A 146 AGFDVILVETVGVGQS---ETA----V-------ADLTDFFLVLMLPG-AG--DELQGIKKGIFEL-------ADMIAVN 201 (337)
T ss_dssp TTCCEEEEEECSSSSC---HHH----H-------HTTSSEEEEEECSC-C--------CCTTHHHH-------CSEEEEE
T ss_pred CCCCEEEEECCCCCcc---hhh----H-------HhhCCEEEEEEcCC-Cc--ccHHHHHHHHhcc-------ccEEEEE
Confidence 4667889999998763 111 1 14679999999875 11 111111 011111 5677789
Q ss_pred CCCCCCcchhhHHHHhccCCCchHHHHHHhcCCce-EEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC-VLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 146 ~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
|+|+.... ......... +...+....... ..+......|+.++.++.+|++.|.+...
T Consensus 202 K~Dl~~~~-~~s~~~~~~-----l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 202 KADDGDGE-RRASAAASE-----YRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCSTTCCH-HHHHHHHHH-----HHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred chhccCch-hHHHHHHHH-----HHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99975431 112222222 222222111000 00011123688889999999999888764
No 192
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.21 E-value=7e-11 Score=99.25 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=51.7
Q ss_pred CccEEEEEeecCCC--CCHHHH-HHHHHHHHHh-ccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc-C
Q 017924 103 GIHAFLVVFSVTNR--FSQEEE-TAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC-D 177 (363)
Q Consensus 103 ~~~~~l~v~~~~~~--~~~~~~-~~l~~~~~~~-~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~ 177 (363)
++|++++|+|+++. .+-... .++..+.... ... .++++|.||+|+... ..++ . ...+.... +
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~--~piilV~NK~Dl~~~--~~v~----~-----~~~~~~~~~~ 228 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK--KPIVVVLTKCDEGVE--RYIR----D-----AHTFALSKKN 228 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTT--CCEEEEEECGGGBCH--HHHH----H-----HHHHHHTSSS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCC--CCEEEEEEccccccc--HHHH----H-----HHHHHHhcCC
Confidence 47999999999844 444332 3444444331 122 389999999998644 2222 1 22233221 2
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
..++ ..|++.+.++.++++.|...+
T Consensus 229 ~~~~------e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 229 LQVV------ETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp CCEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred CeEE------EEECCCCCCHHHHHHHHHHHh
Confidence 2222 568888899999998876654
No 193
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.20 E-value=1.5e-10 Score=110.44 Aligned_cols=119 Identities=20% Similarity=0.257 Sum_probs=76.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc-ccc--ccC-------------CCCCceeeEeEEEEeeCC-------cEEEE
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKA--SAG-------------SSGVTKTCEMKTTVLKDG-------QVVNV 73 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~-~~~--~~~-------------~~~~t~~~~~~~~~~~~~-------~~~~l 73 (363)
..-.+|+|+|+.|+|||||++.|+.... +.. ... ..+.|+......+.+ .+ ..++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEE
Confidence 3447999999999999999999964211 000 000 123344444444444 34 78999
Q ss_pred EeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 74 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
|||||..+. ..+..+. ...+|++++|+|++..........+..+... + .++++|+||+|....
T Consensus 87 iDTPG~~df-------~~~~~~~----l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-~----ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDF-------TIEVERS----MRVLDGAVMVYCAVGGVQPQSETVWRQANKY-K----VPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccch-------HHHHHHH----HHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc-C----CCEEEEEeCCCcccc
Confidence 999997653 1222222 2357999999999866655555555544332 2 289999999998755
No 194
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.18 E-value=5.2e-10 Score=95.62 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=69.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (363)
+|+|+|..|+|||||++.+.+... .........|+......+ .....+.+|||+|......+.. +. ...
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~-~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~l-----~~---~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQ-PLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPSY-----DS---ERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCC-SGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCSH-----HH---HHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCC-CCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchhh-----hh---hhh
Confidence 589999999999999998875532 111111112222222222 1346788999999876421111 01 123
Q ss_pred CCCccEEEEEeecCCCCCHHHHHHHHH-HHHH--hccccccceEEEEeCCCCCCc
Q 017924 101 KDGIHAFLVVFSVTNRFSQEEETAVHR-LPNL--FGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 101 ~~~~~~~l~v~~~~~~~~~~~~~~l~~-~~~~--~~~~~~~~~i~v~n~~D~~~~ 152 (363)
+.+++++++|+|.+++ .......+.. +... ...++ +++++.||+|+...
T Consensus 70 yr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~i--pillvgNK~DL~~~ 121 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSI--NIEVLIHKVDGLSE 121 (331)
T ss_dssp HTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTC--EEEEECCCCCSSCS
T ss_pred ccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCC--cEEEEEECcccCch
Confidence 4678999999999855 3333333322 2221 12233 88999999999865
No 195
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.18 E-value=3.5e-11 Score=113.83 Aligned_cols=116 Identities=22% Similarity=0.321 Sum_probs=82.6
Q ss_pred cEEEEEcCCCCchHHHHHHhh---cccccccccC-------------CCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSIL---GRKAFKASAG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~---g~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (363)
++|+|+|+.++|||||...|+ |...-..... .+++|+......+.| +++.++|+||||..|+
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF- 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF- 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH-
Confidence 589999999999999999885 2211000010 123455555556666 7889999999998885
Q ss_pred CChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+..+.+ .-+|++++|+|+........+..++.+... + + |.++++||+|....
T Consensus 81 ------~~Ev~raL----~~~DgavlVVDa~~GV~~qT~~v~~~a~~~-~--l--p~i~~INKmDr~~a 134 (638)
T 3j25_A 81 ------LAEVYRSL----SVLDGAILLISAKDGVQAQTRILFHALRKM-G--I--PTIFFINKIDQNGI 134 (638)
T ss_dssp ------HHHHHHHH----TTCSEEECCEESSCTTCSHHHHHHHHHHHH-T--C--SCEECCEECCSSSC
T ss_pred ------HHHHHHHH----HHhCEEEEEEeCCCCCcHHHHHHHHHHHHc-C--C--CeEEEEeccccccC
Confidence 33444444 356999999999877877788888777764 2 2 78899999998755
No 196
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.17 E-value=1.3e-10 Score=109.37 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.7
Q ss_pred EEEEEcCCCCchHHHHHHhhcccc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.|+|||+||||||||+++|+|...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~ 70 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVAL 70 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-
T ss_pred eEEEECCCCChHHHHHHHHhCCCC
Confidence 599999999999999999999753
No 197
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.13 E-value=1.2e-09 Score=104.66 Aligned_cols=117 Identities=28% Similarity=0.321 Sum_probs=79.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc---c-------------cccccCCCCCceeeEeEEEEee------CCcEEEEEeCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK---A-------------FKASAGSSGVTKTCEMKTTVLK------DGQVVNVIDTP 77 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~---~-------------~~~~~~~~~~t~~~~~~~~~~~------~~~~~~l~Dtp 77 (363)
++|+|||+.++|||||...|+-.. . +......+++|+......+.|. +++.++|||||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 689999999999999999885111 0 0011122445555555555552 25689999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
|..|+ ..+..+.+. -+|++++|+|+...........++.+... .. +.++++||+|....
T Consensus 94 GHvDF-------~~Ev~~aLr----~~DgavlvVDaveGV~~qT~~v~~~a~~~---~l--p~i~~iNKiDr~~a 152 (709)
T 4fn5_A 94 GHVDF-------TIEVERSLR----VLDGAVVVFCGTSGVEPQSETVWRQANKY---GV--PRIVYVNKMDRQGA 152 (709)
T ss_dssp SCTTC-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHH---TC--CEEEEEECSSSTTC
T ss_pred CCccc-------HHHHHHHHH----HhCeEEEEEECCCCCchhHHHHHHHHHHc---CC--CeEEEEccccccCc
Confidence 98885 345555544 34899999999878888888888887664 22 89999999998754
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.12 E-value=7.3e-11 Score=114.90 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=73.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccccccccc--------------CCCCCceeeEeEEEEee---------------CCc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA--------------GSSGVTKTCEMKTTVLK---------------DGQ 69 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------------~~~ 69 (363)
-.+|+|+|+.|+|||||++.|++........ ...++|+......+.+. .+.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 3689999999999999999998642110000 01122332222223331 156
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCC
Q 017924 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (363)
Q Consensus 70 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~ 149 (363)
.++||||||..+.. ...... ...+|++++|+|+.+..+......+..+... . .++++|+||+|+
T Consensus 99 ~i~liDTPG~~df~-------~~~~~~----l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~---~--~p~ilviNK~D~ 162 (842)
T 1n0u_A 99 LINLIDSPGHVDFS-------SEVTAA----LRVTDGALVVVDTIEGVCVQTETVLRQALGE---R--IKPVVVINKVDR 162 (842)
T ss_dssp EEEEECCCCCCSSC-------HHHHHH----HHTCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CEEEEEEECHHH
T ss_pred eEEEEECcCchhhH-------HHHHHH----HHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCeEEEEECCCc
Confidence 78999999987742 122222 2367999999999867777766655544321 2 278999999997
Q ss_pred C
Q 017924 150 L 150 (363)
Q Consensus 150 ~ 150 (363)
.
T Consensus 163 ~ 163 (842)
T 1n0u_A 163 A 163 (842)
T ss_dssp H
T ss_pred c
Confidence 6
No 199
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.08 E-value=4.9e-10 Score=97.58 Aligned_cols=89 Identities=15% Similarity=0.048 Sum_probs=51.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCC-----------------cEEEEEeCCCCCC
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGLFD 81 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~l~DtpG~~~ 81 (363)
+.+|+|||.+|+|||||+|+|+|... ...... .+|.......+.+ .+ ..+.++||||+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~-~v~~~p-~tTi~p~~g~v~~-~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGI-EAANYP-FCTIEPNTGVVPM-PDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------C-CCCCCCCSSEEEC-CCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-cccCCC-CceECceEEEEec-CCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 36899999999999999999998652 111111 1122222222222 22 4688999999875
Q ss_pred CCCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
... . .+.+...+.....++|++++|+|++
T Consensus 79 ~a~---~-~~gl~~~fl~~ir~ad~il~VvD~~ 107 (363)
T 1jal_A 79 GAS---K-GEGLGNKFLANIRETDAIGHVVRCF 107 (363)
T ss_dssp THH---H-HGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred ccc---c-cchHHHHHHHHHHhcCeEEEEEecC
Confidence 210 0 1111111112235789999999986
No 200
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.02 E-value=1.5e-11 Score=108.46 Aligned_cols=125 Identities=16% Similarity=0.198 Sum_probs=69.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccc----cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFK----ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (363)
+.+|+++|.+|+|||||+|+|+|..... ...+....|+.... .+.. +..+.++||||+.+.......+..+..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~-~~~~--~~~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLI-DIPL--DEESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEE-EEES--SSSCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceE-EEEe--cCCeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 3689999999999999999999874211 11222222332222 1222 223779999999875422222222322
Q ss_pred HHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 95 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
..+. ....++.++|+++....+..+....+..+. +.. .++++++||.|.+..
T Consensus 237 ~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~---~~~--~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 237 KLIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVS---GGR--RAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE
T ss_pred HHhc-cccccCceEEEEcCCCEEEEcceEEEEEec---CCC--ceEEEEecCcccccc
Confidence 2222 234678888888764121111211122211 112 389999999999866
No 201
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.99 E-value=5.8e-09 Score=92.67 Aligned_cols=115 Identities=18% Similarity=0.171 Sum_probs=62.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE----eEEEEee-CCcEEEEEeCCCCCCCCCChHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE----MKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~----~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (363)
...|+|+|+||||||||+|+|+|... +..|.++.... ...+... ....++++|++|++... ..+ .++
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~----p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~---~~~-~~~ 140 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGN----EEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTN---FPP-DTY 140 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCT----TSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSS---CCH-HHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC----ccCceEEECCeecceeEEeccccccCCeeehHhhcccchH---HHH-HHH
Confidence 35999999999999999999999654 22222221110 0112221 12367899999986422 122 223
Q ss_pred HHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCC
Q 017924 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (363)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~ 150 (363)
...+... ..+.+++ ++.+ +.........+.+.. .+ .++++|+|+.|.+
T Consensus 141 L~~~~L~--~~~~~~~-lS~G-~~~kqrv~la~aL~~-~~----~p~~lV~tkpdll 188 (413)
T 1tq4_A 141 LEKMKFY--EYDFFII-ISAT-RFKKNDIDIAKAISM-MK----KEFYFVRTKVDSD 188 (413)
T ss_dssp HHHTTGG--GCSEEEE-EESS-CCCHHHHHHHHHHHH-TT----CEEEEEECCHHHH
T ss_pred HHHcCCC--ccCCeEE-eCCC-CccHHHHHHHHHHHh-cC----CCeEEEEecCccc
Confidence 3322221 2244444 5655 333333333333322 22 2899999998764
No 202
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.99 E-value=1.4e-11 Score=108.89 Aligned_cols=125 Identities=18% Similarity=0.161 Sum_probs=69.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccc---cccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFK---ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (363)
+.+|+++|.+|+|||||+|+|+|...+. ...+..+.|+.... .+.. +..++++||||+.+.......+..+...
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~-~~~~--~~~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMI-EIPL--ESGATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEE-EEEC--STTCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeE-EEEe--CCCeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 3589999999999999999999872110 11112222222221 2222 2347799999998654222222222222
Q ss_pred HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
.+. ....++.++|+++....+..+....+..+. +.. .++++++||.|.+..
T Consensus 239 ~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~---~~~--~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 239 IIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIK---GGR--RSFVCYMANELTVHR 289 (369)
T ss_dssp HHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE
T ss_pred HHh-cccccCceEEEEcCCceEEECCEEEEEEcc---CCC--ceEEEEecCCccccc
Confidence 221 225789999999874221111211122211 112 388999999998765
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.96 E-value=1.2e-09 Score=92.31 Aligned_cols=130 Identities=12% Similarity=-0.061 Sum_probs=64.0
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHH-HHHHHHHhccccccceEEEEeCC
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGG 147 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~i~v~n~~ 147 (363)
..+.|+||||..+.. . ...+...+...... +++++++|.....+..+... +........ ....++++|+||+
T Consensus 109 ~d~iiiDtpG~~~~~----~-~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~iv~NK~ 181 (262)
T 1yrb_A 109 NDYVLIDTPGQMETF----L-FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL-RLGATTIPALNKV 181 (262)
T ss_dssp CSEEEEECCSSHHHH----H-HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH-HHTSCEEEEECCG
T ss_pred CCEEEEeCCCccchh----h-hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc-ccCCCeEEEEecc
Confidence 367899999965310 0 00111111122245 88999988763444433221 111111110 1113889999999
Q ss_pred CCCCcc-hhhHHHHhccCCCchHHH-----------------HHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHHH
Q 017924 148 DDLEDH-EKTLEDFLGHECPKPLKE-----------------ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (363)
Q Consensus 148 D~~~~~-~~~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 209 (363)
|..... ...+.+++.. ....... .+...+.. ......|+..+.++.+|++.|.+.+.
T Consensus 182 D~~~~~~~~~~~~~l~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 182 DLLSEEEKERHRKYFED-IDYLTARLKLDPSMQGLMAYKMCSMMTEVLPP----VRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp GGCCHHHHHHHHHHHHC-HHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCC----CCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHhC-hHHHHHHHhccccccchhHhHHHHHHHHhcCc----ccceEEEecCcccHHHHHHHHHHHhc
Confidence 987541 0112333222 0000001 01222211 12235678889999999999888765
Q ss_pred H
Q 017924 210 Q 210 (363)
Q Consensus 210 ~ 210 (363)
.
T Consensus 257 ~ 257 (262)
T 1yrb_A 257 T 257 (262)
T ss_dssp H
T ss_pred c
Confidence 4
No 204
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.88 E-value=2.7e-09 Score=93.81 Aligned_cols=92 Identities=16% Similarity=0.135 Sum_probs=46.7
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeC----------------CcEEEEEeCCCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLF 80 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~ 80 (363)
..+.+|+|||.+|+|||||+|+|+|... ..... ..+|.......+.+.+ ...+.++||||+.
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~-p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENF-PFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCC-CccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 3457999999999999999999998753 11111 1122222222222211 2358899999987
Q ss_pred CCCCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
........+...+. .....+|++++|+|+.
T Consensus 98 ~~as~~~glg~~~l----~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 98 KGAHNGQGLGNAFL----SHISACDGIFHLTRAF 127 (396)
T ss_dssp ---------CCHHH----HHHHTSSSEEEEEEC-
T ss_pred cccchhhHHHHHHH----HHHHhcCeEEEEEecC
Confidence 53211111111222 2335789999999976
No 205
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.87 E-value=6.9e-09 Score=96.07 Aligned_cols=107 Identities=21% Similarity=0.195 Sum_probs=60.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc-cccccCCCCCceeeEeEEEE--eeCCcEEEEEeCCCCCCCCC--ChHHHHH
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTV--LKDGQVVNVIDTPGLFDLSA--GSEFVGK 91 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~-~~~~~~~~~~t~~~~~~~~~--~~~~~~~~l~DtpG~~~~~~--~~~~~~~ 91 (363)
.+..+|+|||.+|+|||||||.|+|... |....+...+|......... ...+..+.|+||||+.+... ...++..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~ 115 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWI 115 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHH
Confidence 3447899999999999999999999864 22111111222222111111 12467889999999987533 1122111
Q ss_pred HHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHH
Q 017924 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (363)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~ 130 (363)
.....+. + + ++|+++...++..+...+..+..
T Consensus 116 fala~ll-s----s--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 116 FALAVLL-S----S--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHH-C----S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HHHHHHh-c----C--eEEEECCCCccHHHHHHHHHHHH
Confidence 1111111 1 1 34445444788888777666544
No 206
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.87 E-value=4.1e-09 Score=92.98 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=56.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEeeCC-----------------cEEEEEeCCC
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDG-----------------QVVNVIDTPG 78 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~-----------------~~~~l~DtpG 78 (363)
..+.+|+|||.||||||||+|+|+|..... ....+ +|.......+.+ .+ ..+.++|+||
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~--~~~~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGN--PANYPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTS--TTCCSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccc--ccCCCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEeccc
Confidence 456899999999999999999999865311 22222 222222222333 22 3578999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
+.......+.+...+...+ ..+|++++|+++.
T Consensus 95 l~~~~s~~e~L~~~fl~~i----r~~d~il~Vvd~~ 126 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHV----RAVDAIYQVVRAF 126 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHH----TTCSEEEEEEECC
T ss_pred cccCCcHHHHHHHHHHHHH----HHHHHHHHHHhcc
Confidence 8753322222223333332 3679999999875
No 207
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.80 E-value=5.8e-08 Score=88.45 Aligned_cols=122 Identities=14% Similarity=0.169 Sum_probs=68.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhh------cccccccccCC-CCCce----------eeEeEEEE---------------e
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGS-SGVTK----------TCEMKTTV---------------L 65 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~------g~~~~~~~~~~-~~~t~----------~~~~~~~~---------------~ 65 (363)
...+|+|+|.+|+||||+++.|+ |.......... ++... ...++... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 44699999999999999999998 65432111110 11000 00111100 0
Q ss_pred -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccce-EEE
Q 017924 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM-IVV 143 (363)
Q Consensus 66 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-i~v 143 (363)
..+..++||||||.... +..+..++...... ..+|.+++|+|+..... .......+... .++ ++|
T Consensus 180 ~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~gvV 246 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVASVI 246 (504)
T ss_dssp HHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCCEE
T ss_pred HHCCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh------cCceEEE
Confidence 04567889999998752 22334444333221 15789999999874332 22233333221 154 789
Q ss_pred EeCCCCCCc
Q 017924 144 FTGGDDLED 152 (363)
Q Consensus 144 ~n~~D~~~~ 152 (363)
+||+|....
T Consensus 247 lNK~D~~~~ 255 (504)
T 2j37_W 247 VTKLDGHAK 255 (504)
T ss_dssp EECTTSCCC
T ss_pred EeCCccccc
Confidence 999998754
No 208
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.79 E-value=1.6e-08 Score=82.98 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+|+|+|..|+|||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999865
No 209
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.78 E-value=1.3e-08 Score=86.27 Aligned_cols=66 Identities=20% Similarity=0.316 Sum_probs=41.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCCChHH
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~ 88 (363)
...+|+|+|.+|+|||||+|+|+|......+...+ +|...+. +.. +..+.++||||+........+
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g-~T~~~~~--~~~--~~~~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPG-ITTSQQW--VKV--GKELELLDTPGILWPKFEDEL 184 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CC--EEE--TTTEEEEECCCCCCSCCCCHH
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCC-eeeeeEE--EEe--CCCEEEEECcCcCCCCCCCHH
Confidence 45799999999999999999999987533333222 2322322 222 446789999999876544433
No 210
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.77 E-value=1.1e-08 Score=89.72 Aligned_cols=88 Identities=20% Similarity=0.173 Sum_probs=53.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCC-CceeeEeEEEEee--------------------CCcEEEEEeCCC
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLK--------------------DGQVVNVIDTPG 78 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~--------------------~~~~~~l~DtpG 78 (363)
.+|+|||.+|+|||||+|+|++... . ..... .|+...+....+. ....+.++||||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~-~--v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpG 78 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANA-L--AANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAG 78 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHT-T--CSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-c--ccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCC
Confidence 4799999999999999999997642 1 11111 1222222222211 134688999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecC
Q 017924 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (363)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~ 114 (363)
+.........+...+... ...+|++++|+|+.
T Consensus 79 l~~~a~~~~~lg~~fl~~----ir~ad~ii~VvD~~ 110 (368)
T 2dby_A 79 LVKGAHKGEGLGNQFLAH----IREVAAIAHVLRCF 110 (368)
T ss_dssp CCCCCCSSSCTTHHHHHH----HHTCSEEEEEEECC
T ss_pred ccccccccchHHHHHHHH----HHhCCEEEEEEECC
Confidence 875322112223333333 34679999999987
No 211
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.73 E-value=1.7e-07 Score=84.37 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..+..|+|||.||||||||++.|+|..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 356799999999999999999998653
No 212
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.62 E-value=3e-07 Score=78.60 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..+..|+|+|+||||||||++.|+|..
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 356799999999999999999998653
No 213
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.62 E-value=5.7e-08 Score=80.06 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 456999999999999999999998875
No 214
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.61 E-value=1.2e-06 Score=75.67 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.++..|+|+|+||||||||++.|+|..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998754
No 215
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.56 E-value=5.4e-08 Score=81.55 Aligned_cols=64 Identities=25% Similarity=0.390 Sum_probs=40.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeEeEEEEeeCCcEEEEEeCCCCCCCCC-ChHH
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA-GSEF 88 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~~~ 88 (363)
.+|+|+|.+|+|||||+|+|+|......+...+ +|..... +. -+..+.++||||+..... .+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g-~T~~~~~--~~--~~~~~~l~DtpG~~~~~~~~~~~ 164 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPG-ITKGIQW--FS--LENGVKILDTPGILYKNIFSEDL 164 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCE--EE--CTTSCEEESSCEECCCCCCSHHH
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCC-CccceEE--EE--eCCCEEEEECCCcccCcCCCChh
Confidence 499999999999999999999877533333322 2222221 11 245678999999998665 4443
No 216
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.54 E-value=2.3e-06 Score=76.42 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=66.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhh------cccccccccCCC-CC----------ceeeEeEEEE---------------e
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSS-GV----------TKTCEMKTTV---------------L 65 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~------g~~~~~~~~~~~-~~----------t~~~~~~~~~---------------~ 65 (363)
...+|+++|.+|+||||++..|+ |........... .. .....++... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999887 322111000000 00 0000011000 0
Q ss_pred -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEE
Q 017924 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (363)
Q Consensus 66 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~ 144 (363)
..+..+.||||+|.... +.....++....... .+|.+++|+|+.. ..........+...+ ....+|+
T Consensus 179 ~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~~--~pd~vlLVvDA~~--gq~a~~~a~~f~~~~-----~i~gVIl 246 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE---DKALIEEMKQISNVI--HPHEVILVIDGTI--GQQAYNQALAFKEAT-----PIGSIIV 246 (443)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGG--GGGHHHHHHHHHHSC-----TTEEEEE
T ss_pred HhCCCCEEEEECCCcccc---hHHHHHHHHHHHHhh--cCceEEEEEeCCC--chhHHHHHHHHHhhC-----CCeEEEE
Confidence 02356789999997652 334444554433222 4688999999862 122222222222221 2566889
Q ss_pred eCCCCCCc
Q 017924 145 TGGDDLED 152 (363)
Q Consensus 145 n~~D~~~~ 152 (363)
||+|....
T Consensus 247 TKlD~~~~ 254 (443)
T 3dm5_A 247 TKLDGSAK 254 (443)
T ss_dssp ECCSSCSS
T ss_pred ECCCCccc
Confidence 99998755
No 217
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.52 E-value=4.5e-08 Score=80.09 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999999865
No 218
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.51 E-value=3.5e-07 Score=75.82 Aligned_cols=133 Identities=9% Similarity=0.035 Sum_probs=68.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-------------eEEEEeeCC--cEEEEEeCCCCC-C
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-------------MKTTVLKDG--QVVNVIDTPGLF-D 81 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-------------~~~~~~~~~--~~~~l~DtpG~~-~ 81 (363)
++..++|+|+||||||||+++|+|... +..|.+..... +.++.+ +. ...++.|...+. .
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q-~~~l~~~tv~enl~~~~~ 101 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ----PTAGEITIDGQPIDNISLENWRSQIGFVSQ-DSAIMAGTIRENLTYGLE 101 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC----CSBSCEEETTEESTTTSCSCCTTTCCEECC-SSCCCCEEHHHHTTSCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCEEhhhCCHHHHHhhEEEEcC-CCccccccHHHHHhhhcc
Confidence 456999999999999999999998865 33444333211 111111 00 011222332222 1
Q ss_pred CCCChHHHHHHHHHHHhcc--CC----CccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 82 LSAGSEFVGKEIVKCLGMA--KD----GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~--~~----~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
.......+. +....+... .. +.+.. +......+++++++++.....+.... .++++ ++.+|....
T Consensus 102 ~~~~~~~~~-~~l~~~~l~~~~~~~~~gl~~~--~~~~~~~LSgGq~qrv~lAral~~~p---~lllLDEPts~LD~~~~ 175 (243)
T 1mv5_A 102 GDYTDEDLW-QVLDLAFARSFVENMPDQLNTE--VGERGVKISGGQRQRLAIARAFLRNP---KILMLDEATASLDSESE 175 (243)
T ss_dssp SCSCHHHHH-HHHHHHTCTTTTTSSTTGGGCE--ESTTSBCCCHHHHHHHHHHHHHHHCC---SEEEEECCSCSSCSSSC
T ss_pred CCCCHHHHH-HHHHHhChHHHHHhCccchhch--hccCcCcCCHHHHHHHHHHHHHhcCC---CEEEEECCcccCCHHHH
Confidence 111222222 222222111 00 11111 11112489999999999998887653 45555 678887765
Q ss_pred chhhHHHHhcc
Q 017924 153 HEKTLEDFLGH 163 (363)
Q Consensus 153 ~~~~l~~~~~~ 163 (363)
..+.+.+..
T Consensus 176 --~~i~~~l~~ 184 (243)
T 1mv5_A 176 --SMVQKALDS 184 (243)
T ss_dssp --CHHHHHHHH
T ss_pred --HHHHHHHHH
Confidence 555554443
No 219
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.51 E-value=5.4e-08 Score=78.74 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999999865
No 220
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.50 E-value=3.9e-07 Score=81.57 Aligned_cols=104 Identities=17% Similarity=0.174 Sum_probs=57.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc-----------------cccccccCCCCCceeeEeEEEEee--------C--CcE
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR-----------------KAFKASAGSSGVTKTCEMKTTVLK--------D--GQV 70 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~-----------------~~~~~~~~~~~~t~~~~~~~~~~~--------~--~~~ 70 (363)
+-..|+|+|+.++|||||+|.|+|. ..|..+.+...+|. ..+.|. + ...
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~----GIw~~~~p~~~~~~~~~~~~ 141 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETT----GIQIWSEIFLINKPDGKKVA 141 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCC----EEEEESSCEEEECSSSCEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCcee----EEEEecCccccccCCCCcce
Confidence 4478999999999999999999975 12322222222222 222221 1 246
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHH
Q 017924 71 VNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL 131 (363)
Q Consensus 71 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~ 131 (363)
+.++||+|+++... +..-...+-...... .+++||-. ...+...+...|..+.++
T Consensus 142 vvllDTeG~~~~~~-~~~~d~~ifal~~lL---Ss~~IyN~--~~~i~~~~l~~L~~~~e~ 196 (447)
T 3q5d_A 142 VLLMDTQGTFDSQS-TLRDSATVFALSTMI---SSIQVYNL--SQNVQEDDLQHLQLFTEY 196 (447)
T ss_dssp EEEEEEECCCSSHH-HHHHHHHHHHHHHHH---CSEEEEEE--SSSCCHHHHHHHHHHHHH
T ss_pred EEEEcCCccccccc-chhhhHHHHHHHHHH---hhHHHHhh--cccccHHHHHHHHHHHHH
Confidence 88999999987532 111111111111111 23444433 337778787777766553
No 221
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.49 E-value=2.5e-06 Score=72.84 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.++..|+|+|+||||||||++.|+|..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998754
No 222
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.47 E-value=1.1e-06 Score=75.82 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=46.2
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCC---------CCCHHHHHHHHHHHHHhccc--
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN---------RFSQEEETAVHRLPNLFGKN-- 135 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~---------~~~~~~~~~l~~~~~~~~~~-- 135 (363)
++..+.++||.|. +.+...+..++.+++++++|+|++. ... .-...+.++...+...
T Consensus 159 ~~v~l~iwDtaGQ-----------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~n-r~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 159 KDIPFHLIDVGGQ-----------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTS-RLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp SSCEEEEEECCSC-----------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSB-HHHHHHHHHHHHHHCGGG
T ss_pred eeeeeccccCCCc-----------ccccccHHHHhccCCEEEEEEECCccccccccccccc-hHHHHHHHHHHHhhhhcc
Confidence 5677899999993 3455666677889999999999861 111 1112233333333211
Q ss_pred cccceEEEEeCCCCCC
Q 017924 136 VFDYMIVVFTGGDDLE 151 (363)
Q Consensus 136 ~~~~~i~v~n~~D~~~ 151 (363)
...+++|+.||+|+..
T Consensus 227 ~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFE 242 (340)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCeEEEEEECchhhh
Confidence 1238999999999764
No 223
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.47 E-value=4.9e-08 Score=83.32 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|||+||||||||+++|+|...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 457999999999999999999998765
No 224
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.47 E-value=1.2e-06 Score=71.85 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..+|+|+|..|+|||||++.|++.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 379999999999999999999854
No 225
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.46 E-value=3.3e-06 Score=73.67 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.++..|+|||+||||||||++.|+|..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 456799999999999999999998754
No 226
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.44 E-value=1.9e-07 Score=77.82 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999999876
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.40 E-value=5.3e-07 Score=80.91 Aligned_cols=122 Identities=16% Similarity=0.145 Sum_probs=65.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc------cccccC-CCC--------------C-------ceee--Ee--EEEEee
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA------FKASAG-SSG--------------V-------TKTC--EM--KTTVLK 66 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~------~~~~~~-~~~--------------~-------t~~~--~~--~~~~~~ 66 (363)
..+|+|+|.+|+||||+++.|++... ...... .+. + +... .+ ..+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999976321 000000 000 0 0000 00 000001
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccc-cceEEEEe
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF-DYMIVVFT 145 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~i~v~n 145 (363)
.+..+.|+||||... .+..+..++... .....+|.+++|+++.... . .+..+.. +... . ....+|+|
T Consensus 179 ~~~D~vIIDT~G~~~---~~~~l~~~l~~i--~~~~~~d~vllVvda~~g~--~---~~~~~~~-~~~~-~~~i~gvVln 246 (432)
T 2v3c_C 179 KKADVLIIDTAGRHK---EEKGLLEEMKQI--KEITNPDEIILVIDGTIGQ--Q---AGIQAKA-FKEA-VGEIGSIIVT 246 (432)
T ss_dssp SSCSEEEEECCCSCS---SHHHHHHHHHHT--TSSSCCSEEEEEEEGGGGG--G---HHHHHHH-HHTT-SCSCEEEEEE
T ss_pred hCCCEEEEcCCCCcc---ccHHHHHHHHHH--HHHhcCcceeEEeeccccH--H---HHHHHHH-Hhhc-ccCCeEEEEe
Confidence 455678999999765 233344444332 2223689999999975222 1 2222322 2211 1 13778999
Q ss_pred CCCCCCc
Q 017924 146 GGDDLED 152 (363)
Q Consensus 146 ~~D~~~~ 152 (363)
|+|....
T Consensus 247 K~D~~~~ 253 (432)
T 2v3c_C 247 KLDGSAK 253 (432)
T ss_dssp CSSSCST
T ss_pred CCCCccc
Confidence 9998643
No 228
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.38 E-value=2.6e-07 Score=80.46 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|-..
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 456999999999999999999998875
No 229
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.38 E-value=2.5e-07 Score=80.70 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456999999999999999999999875
No 230
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.36 E-value=1.9e-07 Score=81.18 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 456899999999999999999999876
No 231
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.35 E-value=1.2e-05 Score=69.12 Aligned_cols=74 Identities=9% Similarity=0.140 Sum_probs=46.4
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecC-------CCCCH-HHHHHHHHHHHHhccc--c
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-------NRFSQ-EEETAVHRLPNLFGKN--V 136 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~-------~~~~~-~~~~~l~~~~~~~~~~--~ 136 (363)
++..+.++||.|. +.++..+..++.+++++++|++++ +.-+. .-...+.++..++... .
T Consensus 165 ~~v~l~iwDtgGQ-----------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~ 233 (327)
T 3ohm_A 165 QSVIFRMVDVGGQ-----------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 233 (327)
T ss_dssp TTEEEEEEEECCS-----------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred eceeeEEEEcCCc-----------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC
Confidence 5678889999993 345556667788999999999764 11111 1122333444443221 1
Q ss_pred ccceEEEEeCCCCCC
Q 017924 137 FDYMIVVFTGGDDLE 151 (363)
Q Consensus 137 ~~~~i~v~n~~D~~~ 151 (363)
..+++|+.||+|+..
T Consensus 234 ~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 234 NSSVILFLNKKDLLE 248 (327)
T ss_dssp TCEEEEEEECHHHHH
T ss_pred CceEEEEEECchhhh
Confidence 238899999999754
No 232
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.35 E-value=1.7e-07 Score=82.07 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|-..
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 456899999999999999999999876
No 233
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.32 E-value=4e-07 Score=79.92 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 456899999999999999999999876
No 234
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.32 E-value=6.6e-07 Score=79.86 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=65.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc------cccccccC-C--------------CCCceeeEeE----------EE-Ee
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR------KAFKASAG-S--------------SGVTKTCEMK----------TT-VL 65 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~------~~~~~~~~-~--------------~~~t~~~~~~----------~~-~~ 65 (363)
....|+++|++|+||||++..|++. ........ . ..+....... .. ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 4579999999999999999998732 11000000 0 0000000000 00 00
Q ss_pred -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEE
Q 017924 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (363)
Q Consensus 66 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~ 144 (363)
..+..+.++||+|..... .+.....++....... ..+.+++|+|+.. ..........+...++ ...+|+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~--gq~a~~~a~~f~~~~~-----~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASI--GQKAYDLASRFHQASP-----IGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGG--GGGGHHHHHHHHHHCS-----SEEEEE
T ss_pred HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCcc--chHHHHHHHHHhcccC-----CcEEEE
Confidence 024567899999965411 1223344444433222 4588899998762 1222223333333222 577899
Q ss_pred eCCCCCCc
Q 017924 145 TGGDDLED 152 (363)
Q Consensus 145 n~~D~~~~ 152 (363)
||+|....
T Consensus 246 TKlD~~a~ 253 (433)
T 3kl4_A 246 TKMDGTAK 253 (433)
T ss_dssp ECGGGCSC
T ss_pred eccccccc
Confidence 99998754
No 235
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.30 E-value=2.9e-07 Score=80.34 Aligned_cols=27 Identities=33% Similarity=0.414 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+..++|+|+||||||||+++|+|...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 456899999999999999999999875
No 236
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.28 E-value=2.2e-06 Score=79.40 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=28.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
.+.+++|+|+||||||||+++|+|... +..|.+..
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~----p~~G~i~~ 345 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEE----PTEGKIEW 345 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC----CSBCCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEE
Confidence 457999999999999999999999876 45555543
No 237
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.27 E-value=3e-07 Score=79.96 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456999999999999999999999875
No 238
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.26 E-value=3.3e-07 Score=78.09 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+.+++|+|+||||||||+|+|+|...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHhccccc
Confidence 357999999999999999999998764
No 239
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.26 E-value=2.5e-07 Score=80.67 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|-..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 456899999999999999999999865
No 240
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.24 E-value=2.2e-06 Score=80.49 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||++.|+|... +..|.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~----p~~G~i~~ 402 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYD----VDSGSICL 402 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCCCEEEE
Confidence 456999999999999999999998865 45554444
No 241
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.24 E-value=3.7e-07 Score=79.32 Aligned_cols=27 Identities=33% Similarity=0.398 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 456999999999999999999999875
No 242
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.23 E-value=6e-07 Score=75.30 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 456999999999999999999999875
No 243
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.23 E-value=5.8e-07 Score=73.72 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|+|+||||||||+++|+|... +..|.+..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~ 67 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE----PSEGKIKH 67 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC----CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc----CCccEEEE
Confidence 456899999999999999999999876 44454444
No 244
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.21 E-value=5.3e-07 Score=74.34 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456999999999999999999999876
No 245
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.20 E-value=4.3e-06 Score=71.45 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..+..|+|+|++|+||||++..|++..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 345689999999999999999987543
No 246
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.19 E-value=2.1e-06 Score=79.31 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=28.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t 55 (363)
++..++|+|+||||||||+++|+|... +..|.+.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~----p~~G~i~ 326 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEIT----ADEGSVT 326 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC----CSBCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEE
Confidence 456899999999999999999999876 5555443
No 247
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.19 E-value=5.9e-07 Score=75.11 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 456999999999999999999999865
No 248
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.19 E-value=5.9e-07 Score=75.24 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999999865
No 249
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.19 E-value=5.6e-07 Score=75.71 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 456899999999999999999999765
No 250
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.18 E-value=2.4e-06 Score=80.11 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=28.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
.+..++|+|+||||||||+++|+|... +..|.+..
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~----p~~G~I~~ 415 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEE----PTEGKVEW 415 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC----CSBSCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEE
Confidence 456999999999999999999999876 44555543
No 251
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.18 E-value=6.7e-07 Score=74.52 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456999999999999999999999865
No 252
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.17 E-value=6.5e-07 Score=74.83 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999998865
No 253
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.17 E-value=7.9e-07 Score=77.30 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
+..++|+|+||||||||+|+|+|...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 45899999999999999999998764
No 254
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.16 E-value=6.9e-07 Score=73.86 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999999865
No 255
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.15 E-value=2.4e-06 Score=73.25 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
+..++|+|+||||||||+|+|+ ...
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 4689999999999999999998 654
No 256
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.13 E-value=8.6e-07 Score=73.56 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999998865
No 257
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.13 E-value=9.5e-07 Score=74.19 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456999999999999999999999865
No 258
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.12 E-value=9.6e-07 Score=74.31 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456999999999999999999999865
No 259
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.12 E-value=9.7e-07 Score=72.81 Aligned_cols=25 Identities=44% Similarity=0.440 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..++|+|+||||||||+++|+|...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999999999865
No 260
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.12 E-value=1e-06 Score=74.35 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456899999999999999999999865
No 261
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.12 E-value=1.1e-06 Score=82.48 Aligned_cols=27 Identities=37% Similarity=0.347 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|+|+||||||||+++|+|...
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 457999999999999999999998765
No 262
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.11 E-value=1e-06 Score=73.11 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456899999999999999999999865
No 263
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.11 E-value=1.1e-05 Score=68.81 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..+.+|+|+|+||+||||++..|++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999987543
No 264
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.10 E-value=1.8e-05 Score=67.47 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g 41 (363)
...|+++|++|+||||++..|++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999874
No 265
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.09 E-value=1.9e-06 Score=73.80 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
+..++|+|+||||||||+|+|+|...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 45899999999999999999998765
No 266
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.09 E-value=1.6e-06 Score=66.54 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
++..++|+|+||||||||++.|+|..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999999865
No 267
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.09 E-value=1.2e-06 Score=74.36 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 456899999999999999999999865
No 268
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.05 E-value=1.9e-06 Score=69.59 Aligned_cols=27 Identities=33% Similarity=0.330 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.++..++|+|+||||||||+++|+|..
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345689999999999999999999865
No 269
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.04 E-value=4.6e-06 Score=85.41 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=28.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
++..++|||++|||||||+++|+|... +..|.+.+
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~----~~~G~I~i 477 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD----VLKGKITI 477 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC----CSEEEEEE
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc----cccCcccC
Confidence 456999999999999999999998866 55554444
No 270
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.04 E-value=9.6e-07 Score=82.84 Aligned_cols=27 Identities=33% Similarity=0.314 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 457999999999999999999998865
No 271
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.03 E-value=2e-06 Score=67.49 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=21.4
Q ss_pred EEEEEcCCCCchHHHHHHhhccc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+++|+|+||||||||++.|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999875
No 272
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=98.02 E-value=2.7e-05 Score=69.33 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=60.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhc-----------------ccccccccCCCCCceeeEeEE----EEeeCC--cEEEE
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILG-----------------RKAFKASAGSSGVTKTCEMKT----TVLKDG--QVVNV 73 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g-----------------~~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~l 73 (363)
.+-..|+|+|..++|||+|+|.|++ ...|..+.+...+|....+.. ....++ ..+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 3457899999999999999997752 133443333344444333221 111122 46889
Q ss_pred EeCCCCCCCCCChHHHHHHHHH-HHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHH
Q 017924 74 IDTPGLFDLSAGSEFVGKEIVK-CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL 131 (363)
Q Consensus 74 ~DtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~ 131 (363)
+||.|+++....... ...|-. .+..+ .++||-.. ..+...+...|..+.++
T Consensus 145 lDTEG~~d~~~~~~~-d~~ifaLa~LLS----S~~IyN~~--~~i~~~~L~~L~~~tel 196 (457)
T 4ido_A 145 MDTQGTFDSQSTLRD-SATVFALSTMIS----SIQVYNLS--QNVQEDDLQHLQLFTEY 196 (457)
T ss_dssp EEECCBTCTTCCHHH-HHHHHHHHHHHC----SEEEEEEE--SSCCHHHHHHHHHHHHH
T ss_pred EeccCCCCcccCccc-cHHHHHHHHHHh----hheeeccc--ccCCHHHHHHHHHHHHH
Confidence 999999886554221 112211 11111 44555433 36777777777666543
No 273
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.02 E-value=1.5e-06 Score=69.99 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|. .
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~ 46 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-A 46 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-H
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-C
Confidence 3468999999999999999999998 6
No 274
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.01 E-value=2.9e-06 Score=71.27 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
++..++|+|+||||||||+++|+|.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999997
No 275
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.99 E-value=7.3e-06 Score=83.97 Aligned_cols=134 Identities=13% Similarity=0.108 Sum_probs=74.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCceeeE-------------eEEEEeeCCc--EEEEEeC--CCCC
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE-------------MKTTVLKDGQ--VVNVIDT--PGLF 80 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~~~-------------~~~~~~~~~~--~~~l~Dt--pG~~ 80 (363)
++.+|+|||++|||||||+++|.|-.. +..|.+.++.. +..+.+ +.. .-++-|. -|..
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~----p~~G~I~iDG~di~~i~~~~lR~~i~~V~Q-dp~LF~gTIreNI~~gld 1178 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYD----TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQ-EPTLFDCSIAENIIYGLD 1178 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSC----CSSSEEEETTEETTTBCHHHHHTTEEEECS-SCCCCSEEHHHHHSSSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCcc----CCCCEEEECCEEhhhCCHHHHHhheEEECC-CCEeeCccHHHHHhccCC
Confidence 467999999999999999999997765 55555544322 111111 000 0111121 1222
Q ss_pred CCCCChHHHHHHHHHH-----HhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEE---EeCCCCCCc
Q 017924 81 DLSAGSEFVGKEIVKC-----LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLED 152 (363)
Q Consensus 81 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v---~n~~D~~~~ 152 (363)
....+++++.+.+... +.....+.|..+ -+.+.++++++++++...+.++... +++|+ +..+|..++
T Consensus 1179 ~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~v--ge~G~~LSgGQrQriaiARAllr~~---~ILiLDEaTSaLD~~tE 1253 (1321)
T 4f4c_A 1179 PSSVTMAQVEEAARLANIHNFIAELPEGFETRV--GDRGTQLSGGQKQRIAIARALVRNP---KILLLDEATSALDTESE 1253 (1321)
T ss_dssp TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEE--TTTSCSSCHHHHHHHHHHHHHHSCC---SEEEEESCCCSTTSHHH
T ss_pred CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEe--cCCCcccCHHHHHHHHHHHHHHhCC---CEEEEeCccccCCHHHH
Confidence 2233455554443332 112223334332 2333589999999999999888753 55555 567776554
Q ss_pred chhhHHHHhcc
Q 017924 153 HEKTLEDFLGH 163 (363)
Q Consensus 153 ~~~~l~~~~~~ 163 (363)
..+.+.+..
T Consensus 1254 --~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1254 --KVVQEALDR 1262 (1321)
T ss_dssp --HHHHHHHTT
T ss_pred --HHHHHHHHH
Confidence 455554443
No 276
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.99 E-value=3.1e-06 Score=70.34 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
++..++|+|+||||||||+++|+|.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999996
No 277
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.99 E-value=2.2e-05 Score=67.60 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.++..|+|+|.+|+||||++..|++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45578999999999999999988753
No 278
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.99 E-value=3.4e-06 Score=70.54 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 456999999999999999999998754
No 279
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.97 E-value=5.7e-05 Score=67.78 Aligned_cols=124 Identities=19% Similarity=0.157 Sum_probs=64.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhh-------cccccccccCC-CCCcee----------eEeEE--------------E-
Q 017924 17 NGERTVVLLGRTGNGKSATGNSIL-------GRKAFKASAGS-SGVTKT----------CEMKT--------------T- 63 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~-------g~~~~~~~~~~-~~~t~~----------~~~~~--------------~- 63 (363)
.+..+|+|+|.+|+||||++..|+ |.......... ++.... ..+.. +
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345689999999999999998887 44321111111 000000 00000 0
Q ss_pred Eee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEE
Q 017924 64 VLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV 142 (363)
Q Consensus 64 ~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~ 142 (363)
... .++.+.||||||.... +..+..++...... ..++.+++|+++.... . .+..+.. +.... .-.-+
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~~--~~p~~vllVvda~~g~--~---~~~~~~~-f~~~l-~i~gv 245 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHAS--INPVETLFVVDAMTGQ--D---AANTAKA-FNEAL-PLTGV 245 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHHH--SCCSEEEEEEETTBCT--T---HHHHHHH-HHHHS-CCCCE
T ss_pred HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHHHh--hcCcceeEEeecchhH--H---HHHHHHH-HhccC-CCeEE
Confidence 001 3556889999997652 22333344333221 2568888888876221 1 2222222 22111 12457
Q ss_pred EEeCCCCCCc
Q 017924 143 VFTGGDDLED 152 (363)
Q Consensus 143 v~n~~D~~~~ 152 (363)
|+||+|....
T Consensus 246 VlnK~D~~~~ 255 (433)
T 2xxa_A 246 VLTKVDGDAR 255 (433)
T ss_dssp EEECTTSSSC
T ss_pred EEecCCCCcc
Confidence 8999997644
No 280
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.96 E-value=2.9e-06 Score=67.97 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+..++|+|+||||||||++.|+|..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999754
No 281
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.93 E-value=3.6e-06 Score=73.75 Aligned_cols=27 Identities=37% Similarity=0.495 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 456999999999999999999999865
No 282
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.91 E-value=4.9e-06 Score=67.60 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++..++|+|+||||||||++.|+|...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3557999999999999999999998653
No 283
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.91 E-value=4.3e-06 Score=68.05 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
++..++|+|+||||||||++.|+|..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999754
No 284
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.91 E-value=5.4e-06 Score=66.78 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
++..|+|+|+||||||||++.|+|..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35689999999999999999999763
No 285
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.88 E-value=5.1e-05 Score=71.07 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..++|+|+||||||||+++|+|...
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4689999999999999999999876
No 286
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.88 E-value=6.5e-06 Score=68.76 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+..++|+|+||||||||+++|+|..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999999999875
No 287
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.87 E-value=6.4e-06 Score=66.56 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=24.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++..|+|+|+||||||||++.|+|...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999999997754
No 288
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.86 E-value=2.4e-05 Score=69.71 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
....|+|+|++|+||||++..|++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988743
No 289
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.86 E-value=9.8e-06 Score=74.89 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=25.8
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..++..++|+|+||||||||+++|+|...
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 35667999999999999999999999865
No 290
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.85 E-value=8.2e-06 Score=63.66 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
++..++|+|+||||||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 456899999999999999998653
No 291
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.85 E-value=5.8e-06 Score=65.52 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..|+|+|+||||||||++.|+|...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999997653
No 292
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.84 E-value=7.9e-06 Score=64.34 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..|+|+|++|||||||++.|++..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998754
No 293
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.82 E-value=9.8e-06 Score=64.43 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
++..|+|+|+||||||||++.|+|.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999976
No 294
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.81 E-value=8.2e-06 Score=66.05 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.++..|+|+|++|||||||++.|+|..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999999764
No 295
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.80 E-value=2.7e-05 Score=68.04 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..|+|+|+||||||||+++|+|...
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 456999999999999999999987654
No 296
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.80 E-value=0.00019 Score=61.08 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+..|+|+|++|+||||++..|++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998754
No 297
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.80 E-value=8.5e-06 Score=64.48 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+|+|+|+||||||||++.|+|...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4799999999999999999998754
No 298
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.78 E-value=1.1e-05 Score=67.52 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++..|+|+|+||||||||+++|+|...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 4567999999999999999999998654
No 299
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.78 E-value=1e-05 Score=68.76 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
++.+|+|+|+||||||||+++|+|..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45799999999999999999998653
No 300
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.78 E-value=1.6e-05 Score=74.46 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
-.++..++|+|+||||||||+++|+|...
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 35677999999999999999999999876
No 301
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.77 E-value=1.6e-05 Score=73.70 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=25.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++.+++|+|+||||||||+++|+|...
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5667999999999999999999999765
No 302
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.73 E-value=1.4e-05 Score=69.28 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=27.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT 57 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~ 57 (363)
+..|+|+|+||||||||+++|+|... +..+.++..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~----~~~g~i~i~ 205 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP----KEERIISIE 205 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC----TTSCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc----CCCcEEEEC
Confidence 45899999999999999999998765 444544443
No 303
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.71 E-value=1.6e-05 Score=69.82 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCcee
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT 57 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~~ 57 (363)
.+..|+|+|+||||||||+++|+|... +..+.++..
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~----~~~g~I~ie 209 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP----FDQRLITIE 209 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC----TTSCEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC----CCceEEEEC
Confidence 456999999999999999999998765 444444443
No 304
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.71 E-value=1.6e-05 Score=68.21 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=25.4
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
...+..|+|+|+||||||||++.|+|...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 35667999999999999999999998764
No 305
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.70 E-value=2.3e-05 Score=73.44 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=25.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++.+++|+|+||||||||+++|+|...
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 5667999999999999999999999865
No 306
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.68 E-value=9.6e-06 Score=82.86 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|||+||||||||+++|+|...
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999998765
No 307
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.66 E-value=2.1e-05 Score=69.39 Aligned_cols=27 Identities=41% Similarity=0.453 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 456999999999999999999998653
No 308
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.66 E-value=2.2e-05 Score=65.17 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
++..|+|+|+||||||||++.|+|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999875
No 309
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.65 E-value=1.5e-05 Score=65.44 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=17.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhh-ccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL-GRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~-g~~ 43 (363)
++..|+|+|+||||||||++.|+ |..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35689999999999999999999 764
No 310
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.62 E-value=3.1e-05 Score=62.47 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..|+|+|++|||||||++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998764
No 311
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.62 E-value=3.1e-05 Score=61.38 Aligned_cols=26 Identities=38% Similarity=0.763 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..|+|+|++|||||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998654
No 312
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.60 E-value=2.9e-05 Score=62.18 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..+..|+|+|++|||||||++.|++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999999999999864
No 313
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.60 E-value=2.2e-05 Score=73.74 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 456999999999999999999998765
No 314
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.59 E-value=2.8e-05 Score=70.29 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..++|+|+||||||||+++|+|...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 5899999999999999999998654
No 315
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.59 E-value=2.1e-05 Score=74.13 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++..++|+|+||||||||+++|+|...
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 456999999999999999999998765
No 316
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.59 E-value=2.7e-05 Score=61.74 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|+||||||||++.|++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999985
No 317
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.57 E-value=2.4e-05 Score=73.67 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+++|+|+||||||||+++|+|...
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 467999999999999999999998865
No 318
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.57 E-value=0.00037 Score=68.39 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhh
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~ 40 (363)
.+..++|+|+||+|||||++.|.
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999983
No 319
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.57 E-value=3.8e-05 Score=61.78 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
++..|+|+|++|||||||++.|++..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999998765
No 320
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.55 E-value=3.5e-05 Score=64.01 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhh
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~ 40 (363)
++..++|+|+||||||||++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 45699999999999999999998
No 321
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.55 E-value=3.3e-05 Score=63.30 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+..++|+|+||||||||++.|+|...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999998543
No 322
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.54 E-value=2.9e-05 Score=70.20 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+.+++|+|+||||||||+++|+|...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 467999999999999999999998764
No 323
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.54 E-value=4.4e-05 Score=68.10 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++..|+|+|+||||||||+++|+|...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4567899999999999999999998654
No 324
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.53 E-value=4e-05 Score=70.34 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=26.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccccccccCCCCCce
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK 56 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~~~~~~~~~~~t~ 56 (363)
+..|+|+|+||||||||+++|+|... +..+.+++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~----~~~giiti 293 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP----PDAKVVSI 293 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC----TTCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC----CCCCEEEE
Confidence 45799999999999999999998764 44444444
No 325
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.53 E-value=5e-05 Score=62.27 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.8
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
...+..|+|+|.+|||||||++.|.|.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 355679999999999999999999865
No 326
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.52 E-value=4.4e-05 Score=65.55 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..+..|+|+|+||||||||++.|.|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998753
No 327
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.51 E-value=0.00036 Score=60.83 Aligned_cols=77 Identities=9% Similarity=0.093 Sum_probs=47.7
Q ss_pred EEEeeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCC--------CHHHHHHHHHHHHHhc
Q 017924 62 TTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF--------SQEEETAVHRLPNLFG 133 (363)
Q Consensus 62 ~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~--------~~~~~~~l~~~~~~~~ 133 (363)
.+.. ++..+.++||+|... +...+..++.+++++|||+|+++.- ...-...+.++...+.
T Consensus 187 ~~~~-~~~~l~iwDt~GQe~-----------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~ 254 (353)
T 1cip_A 187 HFTF-KDLHFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 254 (353)
T ss_dssp EEEE-TTEEEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred EEee-CCeeEEEEeCCCchh-----------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc
Confidence 3444 577889999999543 3344556778999999999988310 0111223334444332
Q ss_pred cc--cccceEEEEeCCCCC
Q 017924 134 KN--VFDYMIVVFTGGDDL 150 (363)
Q Consensus 134 ~~--~~~~~i~v~n~~D~~ 150 (363)
.. ...+++|+.||.|+.
T Consensus 255 ~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 255 NKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp CGGGTTSEEEEEEECHHHH
T ss_pred CccccCCcEEEEEECcCch
Confidence 11 123899999999975
No 328
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.50 E-value=5.4e-05 Score=62.78 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhh---cccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL---GRKA 44 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~---g~~~ 44 (363)
...|+|+|+||||||||++.|+ |...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 3589999999999999999999 6543
No 329
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.50 E-value=2.6e-05 Score=76.27 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+.+++|+|+||||||||+++|+|...
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346999999999999999999999865
No 330
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.49 E-value=4.8e-05 Score=59.88 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..++|+|+||||||||+++|.+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 48899999999999999998653
No 331
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.49 E-value=6.6e-05 Score=58.66 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.++..|+|+|.+||||||+++.|.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 34568999999999999999999754
No 332
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.48 E-value=4.2e-05 Score=67.44 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
+.+++|+|+||||||||++.|+|...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46999999999999999999998754
No 333
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.47 E-value=5.1e-05 Score=59.15 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..|+|+|.+|||||||++.|++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998653
No 334
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.46 E-value=6e-05 Score=60.33 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.++..|+|+|++|||||||++.|.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998665
No 335
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.45 E-value=0.00038 Score=68.11 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+..++|+|+||+|||||++.|.+.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHH
Confidence 3568999999999999999998643
No 336
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.45 E-value=5.3e-05 Score=65.96 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=24.7
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..+.+++|+|+||||||||++.|+|...
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567999999999999999999998754
No 337
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.44 E-value=0.001 Score=58.25 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=42.9
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCC---------HHHHHHHHHHHHHhccc--
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS---------QEEETAVHRLPNLFGKN-- 135 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~---------~~~~~~l~~~~~~~~~~-- 135 (363)
++..+.++||+|.. .+...+..++.++++++||+|++ ... ..-...+.++...+...
T Consensus 199 ~~~~l~i~Dt~Gq~-----------~~r~~w~~~f~~~~~iIfv~dls-~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 199 KNVPFKMVDVGGQR-----------SERKRWFECFDSVTSILFLVSSS-EFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETT-CTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CCeEEEEEeccchh-----------hhhhhHHHHhCCCCEEEEEEECc-cccccccccccccHHHHHHHHHHHHhcchhh
Confidence 57788999999953 34444556678999999999998 321 11122233333333211
Q ss_pred cccceEEEEeCCCCC
Q 017924 136 VFDYMIVVFTGGDDL 150 (363)
Q Consensus 136 ~~~~~i~v~n~~D~~ 150 (363)
...+++|++||.|+.
T Consensus 267 ~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 267 SNVSIILFLNKTDLL 281 (362)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred CCCCEEEEEEChhhh
Confidence 123899999999975
No 338
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.43 E-value=6e-05 Score=66.41 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.++..|+|+|+||||||||+++|+|...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4567899999999999999999997643
No 339
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.41 E-value=8.9e-05 Score=56.18 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
....+|+|+||+|||||+++|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999985
No 340
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.38 E-value=6.9e-05 Score=56.77 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+..++|+|++|+|||||+++|++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999997654
No 341
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.38 E-value=0.00011 Score=61.09 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhh
Q 017924 17 NGERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~ 40 (363)
..+..|+|+|++||||||+++.|+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345799999999999999999998
No 342
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.38 E-value=3.9e-05 Score=59.55 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..|+|+|++|||||||++.|+|...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3799999999999999999997754
No 343
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.36 E-value=0.00012 Score=63.19 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..++|+|.+|||||||+|.|+|..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 478999999999999999999764
No 344
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.30 E-value=1.8e-05 Score=64.31 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..++|+|+||||||||+++|+|...
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcccc
Confidence 3578999999999999999998765
No 345
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.30 E-value=9.3e-05 Score=58.10 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
+..++|+|++|+|||||+++|++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999987653
No 346
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.27 E-value=0.00015 Score=62.11 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.....|+|+|++|||||||++.|.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344689999999999999999998654
No 347
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.27 E-value=0.00013 Score=58.44 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..+..|+|+|.+|||||||++.|.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445799999999999999999998654
No 348
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.26 E-value=0.00011 Score=66.05 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=24.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
..+.+++|+|+||||||||++.|+|...
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4567999999999999999999998764
No 349
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.24 E-value=0.028 Score=55.28 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..++|+|++|+|||||++.|++..
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998654
No 350
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.23 E-value=0.00013 Score=58.49 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 017924 21 TVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g 41 (363)
+|+|+|.+||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 799999999999999999986
No 351
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.0026 Score=56.81 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.-|+|.|++|+|||+|.++|++..
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 689999999999999999998654
No 352
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.21 E-value=0.00014 Score=71.18 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
.+.+++|+|+||||||||+++|+|
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999985
No 353
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.20 E-value=0.00016 Score=59.00 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+|+|+|.+||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999864
No 354
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.20 E-value=0.00018 Score=57.80 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|.+||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 355
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.0025 Score=56.11 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.-|++.|++|+|||+|.++|++...
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CceEEeCCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999986643
No 356
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.18 E-value=0.00076 Score=59.07 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.++|+|++|+|||||+++|++.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999874
No 357
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.17 E-value=0.00022 Score=57.33 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+..|+|+|.+|||||||++.|.+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998753
No 358
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.17 E-value=0.0002 Score=57.51 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..|+|+|++|||||||++.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999997543
No 359
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.17 E-value=0.0002 Score=62.93 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
..++|+|+||||||||+++|+
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999987
No 360
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.0029 Score=55.98 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.-|+|.|++|+|||+|.++|++...
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCceECCCCchHHHHHHHHHHHhC
Confidence 5799999999999999999996643
No 361
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.13 E-value=7e-05 Score=67.32 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
+.++|+|+||||||||+++|.+
T Consensus 61 G~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 61 GFCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp SEEEEEESHHHHHHHHTHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3999999999999999999853
No 362
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.11 E-value=0.0015 Score=64.92 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
+..++|+|+||+|||||++.| |...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH
Confidence 578999999999999999999 7654
No 363
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.08 E-value=0.00031 Score=56.22 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
...+|+|+||+|||||+++|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 688999999999999999984
No 364
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.058 Score=46.04 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.....+.|.|++|+|||++++.++...
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344689999999999999999998554
No 365
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.07 E-value=0.00023 Score=59.97 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEcCCCCchHHHHHHhhccc
Q 017924 22 VVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~ 43 (363)
|+|+|+||+|||||+++|+|..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 9999999999999999999754
No 366
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.0042 Score=55.33 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.-|+|.|++|+|||+|+++|++..
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999998654
No 367
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.06 E-value=0.00028 Score=57.73 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+..++|+|+||+|||||++.|++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998543
No 368
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.05 E-value=0.00031 Score=56.07 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+...|+|+|.+||||||+.+.|++.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999854
No 369
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.04 E-value=0.00028 Score=60.21 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+..++|+|+||+|||||++.|+|...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999987654
No 370
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.00 E-value=0.00035 Score=55.91 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|.+||||||+.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999754
No 371
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.98 E-value=0.00043 Score=58.67 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.....|+|+|.+|||||||++.|.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567999999999999999999986543
No 372
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.97 E-value=0.00037 Score=54.10 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..|+|+|.+|+|||||++.|++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998653
No 373
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.96 E-value=0.00027 Score=72.32 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
++.+|+|+|+||||||||+++|+|...
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 456999999999999999999998764
No 374
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.96 E-value=0.00039 Score=54.54 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
-|+|+|++|||||||++.|+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999999754
No 375
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.95 E-value=0.00043 Score=60.27 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
...+|+|+||+|||||+++|+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 677899999999999999974
No 376
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.95 E-value=0.00043 Score=54.16 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..|+|+|.+||||||+++.|.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998643
No 377
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.91 E-value=0.00041 Score=59.97 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
..++|+|+||+|||||+++|.
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 489999999999999999987
No 378
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.91 E-value=0.00039 Score=67.18 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.++..++|+|+||+|||||+++|+|..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 355789999999999999999998753
No 379
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.90 E-value=0.00046 Score=60.24 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..++|+|+||+|||||+++|.+
T Consensus 27 g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHH
Confidence 4899999999999999999974
No 380
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.89 E-value=0.0048 Score=54.53 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=45.5
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCC---C------CCHHHHHHHHHHHHHhccc--
Q 017924 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN---R------FSQEEETAVHRLPNLFGKN-- 135 (363)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~---~------~~~~~~~~l~~~~~~~~~~-- 135 (363)
++..+.++||.|... +...+..++.+++++++|+|+++ . ... -.....++..++...
T Consensus 215 ~~v~l~iwDtaGQe~-----------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns-~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 215 DKVNFHMFDVGGQRD-----------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNR-LQEALNLFKSIWNNRWL 282 (402)
T ss_dssp TTEEEEEEEECCSGG-----------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBH-HHHHHHHHHHHHTCTTC
T ss_pred CCccceecccchhhh-----------hhhhhHhhccCCCEEEEEEECcccccccccccccch-HHHHHHHHHHHHhcccC
Confidence 567889999999543 33445566789999999999983 0 111 112233343333211
Q ss_pred cccceEEEEeCCCCC
Q 017924 136 VFDYMIVVFTGGDDL 150 (363)
Q Consensus 136 ~~~~~i~v~n~~D~~ 150 (363)
...+++||.||+|+.
T Consensus 283 ~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 283 RTISVILFLNKQDLL 297 (402)
T ss_dssp SSCCEEEEEECHHHH
T ss_pred CCCeEEEEEEChhhh
Confidence 123899999999975
No 381
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.0056 Score=54.71 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhcccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.-|+|.|++|+|||+|.++|++...
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CceEeeCCCCCcHHHHHHHHHhccC
Confidence 6899999999999999999986643
No 382
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.87 E-value=0.00052 Score=60.29 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+..|+|+|++|+|||||+++|+|.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999864
No 383
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.85 E-value=0.00059 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g 41 (363)
+..|+|+|.+||||||+.+.|+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999973
No 384
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.84 E-value=0.00047 Score=57.36 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEcCCCCchHHHHHHhhccc
Q 017924 22 VVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~ 43 (363)
|+|+|++|+|||||+++|++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998654
No 385
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.84 E-value=0.00074 Score=53.17 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..|+|+|.+||||||+++.|.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998654
No 386
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.83 E-value=0.00053 Score=61.85 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+..++|+|+||+|||||+++|.+-.
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4689999999999999999997644
No 387
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.83 E-value=0.00051 Score=56.76 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+.+|+|+|.+||||||+.+.|++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998643
No 388
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.82 E-value=0.00062 Score=52.76 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.|+|+|.+||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999744
No 389
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.79 E-value=0.00044 Score=66.11 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.0
Q ss_pred CccEEEEEcCCCCchHHHHHHhh
Q 017924 18 GERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~ 40 (363)
.+..++|+|+||||||||++.|+
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTTH
T ss_pred CCCEEEEEeeCCCCHHHHHHHHH
Confidence 35689999999999999998764
No 390
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.79 E-value=0.0007 Score=52.59 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCchHHHHHHh
Q 017924 20 RTVVLLGRTGNGKSATGNSI 39 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l 39 (363)
..|+|+|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 391
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.78 E-value=0.00067 Score=55.87 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+..++|+|++|+|||||+..|++.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999999999874
No 392
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.77 E-value=0.00073 Score=54.69 Aligned_cols=24 Identities=13% Similarity=-0.015 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCchHHHHHHhhc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
.+..++|+|++|+|||||+..|++
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 393
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.76 E-value=0.00059 Score=65.56 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
+..++|+|+||+|||||++.|+|-.
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 5689999999999999999998754
No 394
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=96.76 E-value=0.0011 Score=60.27 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHh
Q 017924 120 EEETAVHRLPNLF 132 (363)
Q Consensus 120 ~~~~~l~~~~~~~ 132 (363)
.....++.+..++
T Consensus 187 ~~~~al~~~~~l~ 199 (449)
T 3iot_A 187 GAKAGLTFLVDLI 199 (449)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555554
No 395
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.0033 Score=56.08 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.-|+|.|++|+|||+|.++|++..
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHHh
Confidence 589999999999999999998664
No 396
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.73 E-value=0.00061 Score=59.20 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..++|+|++|+|||||+++|+|..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999999765
No 397
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.73 E-value=0.00063 Score=57.41 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEcCCCCchHHHHHHhhccc
Q 017924 22 VVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 22 i~lvG~~g~GKSTli~~l~g~~ 43 (363)
|+|+|++|+|||||+++|++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 9999999999999999998654
No 398
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.73 E-value=0.0012 Score=53.95 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhccc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..+..|+|.|.+||||||+++.|....
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998554
No 399
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.71 E-value=0.00048 Score=63.65 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+..|+|+|.+|||||||+++|++...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 457899999999999999999997754
No 400
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.71 E-value=0.00084 Score=55.14 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+.+|+|+|.+||||||+.+.|++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4479999999999999999999853
No 401
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.71 E-value=0.00099 Score=51.94 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999754
No 402
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.70 E-value=0.00074 Score=57.04 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+..++|+|+||+|||||+..|++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999864
No 403
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.70 E-value=0.00099 Score=51.99 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4799999999999999999985
No 404
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.69 E-value=0.00097 Score=52.62 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999974
No 405
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.68 E-value=0.012 Score=48.92 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|++|+|||+|+++|+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999854
No 406
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.68 E-value=0.0019 Score=52.92 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..++|.|++|+|||||++.++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999997543
No 407
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.67 E-value=0.0012 Score=51.77 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+.+|+|+|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999754
No 408
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.65 E-value=0.0011 Score=53.74 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
....|+|+|..||||||+.+.|+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999974
No 409
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.65 E-value=0.001 Score=53.16 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.|+|+|..||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999854
No 410
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.62 E-value=0.0013 Score=55.75 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
.....|+|+|++|||||||.+.|+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999974
No 411
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.59 E-value=0.00089 Score=61.98 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCchHHHHHH--hhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNS--ILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~--l~g~~ 43 (363)
.+..++|+|+||||||||++. +.|..
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999 45543
No 412
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.58 E-value=0.0009 Score=63.95 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=17.2
Q ss_pred CccEEEEEcCCCCchHHHH
Q 017924 18 GERTVVLLGRTGNGKSATG 36 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli 36 (363)
++..++|+|+||||||||+
T Consensus 43 ~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 43 RGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHh
Confidence 4569999999999999996
No 413
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.58 E-value=0.0012 Score=52.18 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g 41 (363)
+..|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999974
No 414
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.57 E-value=0.0079 Score=54.73 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
...++|+|++|+|||++++.|+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998553
No 415
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.57 E-value=0.0011 Score=51.59 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+|+|+|.+||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999744
No 416
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.55 E-value=0.0018 Score=51.67 Aligned_cols=26 Identities=19% Similarity=0.435 Sum_probs=22.0
Q ss_pred CCCccEEEEEcCCCCchHHHHHHhhc
Q 017924 16 SNGERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 16 ~~~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
+.....|+|+|..||||||+.+.|+.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34446899999999999999999973
No 417
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.54 E-value=0.025 Score=44.93 Aligned_cols=69 Identities=6% Similarity=-0.021 Sum_probs=38.6
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCC
Q 017924 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (363)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~ 147 (363)
.+.+.|+|+|+.... .....+. ..|.+++++..+ ..+......++.+..........++.+|+|+.
T Consensus 75 ~yD~viiD~~~~~~~---------~~~~~l~----~ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV---------ITSAAVM----VSDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSSH---------HHHHHHH----HCSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCCH---------HHHHHHH----HCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 456789999985531 1122222 247888888877 44433344455554432111112558899999
Q ss_pred CCC
Q 017924 148 DDL 150 (363)
Q Consensus 148 D~~ 150 (363)
|..
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 854
No 418
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.53 E-value=0.0012 Score=54.90 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.|+|+|++|||||||.+.|++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999754
No 419
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.53 E-value=0.0016 Score=52.00 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+..|+|+|..||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999743
No 420
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.53 E-value=0.0013 Score=52.88 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..|+|+|.+||||||+.+.|.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999997543
No 421
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.52 E-value=0.0014 Score=51.40 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|.+||||||+.+.|+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999974
No 422
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.52 E-value=0.016 Score=51.23 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.9
Q ss_pred EEEEEcCCCCchHHHHHHhhccc
Q 017924 21 TVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.++|+|++|+|||||++.+++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998654
No 423
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.50 E-value=0.0015 Score=52.02 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
...|+|+|.+||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 368999999999999999999744
No 424
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.50 E-value=0.0013 Score=57.94 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
+.++|+|+||+|||||+.+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 688999999999999999974
No 425
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.49 E-value=0.0017 Score=52.50 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g 41 (363)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999974
No 426
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.48 E-value=0.0017 Score=49.92 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..|+|+|.+|+|||||++.|+...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 579999999999999999998543
No 427
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.48 E-value=0.015 Score=50.61 Aligned_cols=69 Identities=9% Similarity=0.057 Sum_probs=42.3
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHhccCCCccEEEEEeecC----------CCCCHHHHHHHHHHHHHhccc--c
Q 017924 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT----------NRFSQEEETAVHRLPNLFGKN--V 136 (363)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~----------~~~~~~~~~~l~~~~~~~~~~--~ 136 (363)
..+.++||.|... +......++.+++++++|+|++ +.-+ -.....++..++... .
T Consensus 183 v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s--~~~~~~~~~~i~~~~~~~ 249 (354)
T 2xtz_A 183 EVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNR--MMETKELFDWVLKQPCFE 249 (354)
T ss_dssp -EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBH--HHHHHHHHHHHHTCGGGS
T ss_pred eeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhH--HHHHHHHHHHHHhccccC
Confidence 5688999999643 3334456678999999999985 1111 112223333333211 1
Q ss_pred ccceEEEEeCCCCC
Q 017924 137 FDYMIVVFTGGDDL 150 (363)
Q Consensus 137 ~~~~i~v~n~~D~~ 150 (363)
..+++||.||+|+.
T Consensus 250 ~~piiLvgNK~DL~ 263 (354)
T 2xtz_A 250 KTSFMLFLNKFDIF 263 (354)
T ss_dssp SCEEEEEEECHHHH
T ss_pred CCeEEEEEECcchh
Confidence 23899999999975
No 428
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.48 E-value=0.0012 Score=57.54 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..++|+|+||+|||||++.|++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998764
No 429
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.46 E-value=0.0015 Score=50.96 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
...|+|+|.+||||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3579999999999999999997
No 430
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.45 E-value=0.0017 Score=52.10 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+..|+|.|..||||||+.+.|...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999743
No 431
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.45 E-value=0.0015 Score=51.64 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.|+|+|..||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999743
No 432
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.45 E-value=0.0017 Score=51.39 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999863
No 433
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.45 E-value=0.0019 Score=51.88 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+..|+|+|..||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999743
No 434
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.45 E-value=0.0021 Score=51.21 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.7
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
.....|+|+|..||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4446899999999999999999974
No 435
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.42 E-value=0.013 Score=49.31 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|.|++|+|||+|+++|++.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999999999754
No 436
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.41 E-value=0.0017 Score=52.45 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 017924 21 TVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g 41 (363)
+|+|+|..||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999963
No 437
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.40 E-value=0.0015 Score=54.26 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.....|+|+|.+||||||+.+.|...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999754
No 438
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.40 E-value=0.0018 Score=51.25 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g 41 (363)
...|+|+|..||||||+.+.|+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999973
No 439
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.39 E-value=0.0021 Score=52.59 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=22.4
Q ss_pred ccCCCCCCccEEEEEcCCCCchHHHHHHhhcc
Q 017924 11 KPTSPSNGERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.+.+-.....+|+|+|..||||||+.+.|+..
T Consensus 8 ~p~~~~~~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 8 EPVPESPKGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp ------CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34434445578999999999999999999743
No 440
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.39 E-value=0.0019 Score=52.51 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
...|+|+|++||||||+.+.|...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999743
No 441
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.37 E-value=0.037 Score=44.31 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.++|.|+.|+|||+|++.++..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999754
No 442
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.36 E-value=0.0019 Score=52.18 Aligned_cols=21 Identities=38% Similarity=0.737 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 017924 21 TVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g 41 (363)
+|+|+|..||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999963
No 443
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.36 E-value=0.00083 Score=54.14 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.|+|+|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 444
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.29 E-value=0.033 Score=47.87 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
...|+|+|++|+|||+|+++|+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3679999999999999999998543
No 445
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.29 E-value=0.0024 Score=51.41 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+..|+|+|..||||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999743
No 446
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.28 E-value=0.0024 Score=49.17 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 017924 21 TVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g 41 (363)
+|+|+|..||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999974
No 447
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.24 E-value=0.003 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|..||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999963
No 448
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.24 E-value=0.0024 Score=52.05 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|..||||||+.+.|+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999973
No 449
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.20 E-value=0.0031 Score=51.94 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
...+|+|+|..||||||+.+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999973
No 450
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.20 E-value=0.0026 Score=50.49 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|..||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999974
No 451
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.20 E-value=0.0025 Score=51.72 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|..||||||+.+.|+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999743
No 452
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.16 E-value=0.0022 Score=50.15 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=16.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999973
No 453
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.15 E-value=0.01 Score=52.02 Aligned_cols=97 Identities=8% Similarity=0.092 Sum_probs=58.5
Q ss_pred HHHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccccccceEEEEeCCCCCCcc--hhhHHHHhccCCCchH
Q 017924 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH--EKTLEDFLGHECPKPL 169 (363)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~--~~~l~~~~~~~~~~~~ 169 (363)
.+.+.+.......+++++|+|+.+ .+..+...+...++. .++++|+||+|+.... ...+.+++
T Consensus 58 ~f~~~l~~i~~~~~~il~VvD~~d----~~~~~~~~l~~~~~~---~p~ilV~NK~DL~~~~~~~~~~~~~l-------- 122 (368)
T 3h2y_A 58 DFLRILNGIGKSDALVVKIVDIFD----FNGSWLPGLHRFVGN---NKVLLVGNKADLIPKSVKHDKVKHWM-------- 122 (368)
T ss_dssp HHHHHHHHHHHSCCEEEEEEETTS----HHHHCCTTHHHHSSS---SCEEEEEECGGGSCTTSCHHHHHHHH--------
T ss_pred HHHHHHHHHhccCcEEEEEEECCC----CcccHHHHHHHHhCC---CcEEEEEEChhcCCcccCHHHHHHHH--------
Confidence 344444444456789999999872 123344455555543 3899999999997541 11233332
Q ss_pred HHHHHhcCCc--eEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 170 KEILQLCDNR--CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 170 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
.......+.+ .+ ...|+.++.++.+|++.+....
T Consensus 123 ~~~~~~~g~~~~~v-----~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 123 RYSAKQLGLKPEDV-----FLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHTTCCCSEE-----EECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccE-----EEEeCCCCcCHHHHHhhhhhhc
Confidence 2233444431 11 1457888899999999887654
No 454
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.15 E-value=0.0026 Score=49.17 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|..||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999974
No 455
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.15 E-value=0.0023 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..|+|+|++|+|||||+++|++..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 469999999999999999998653
No 456
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.14 E-value=0.0029 Score=50.08 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.|+|.|..||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999743
No 457
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.14 E-value=0.0026 Score=49.81 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
.+|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 458
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.12 E-value=0.0028 Score=51.11 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 017924 21 TVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g 41 (363)
+|+|+|..||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
No 459
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.11 E-value=0.0031 Score=49.80 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.|+|.|..||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999743
No 460
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.08 E-value=0.0033 Score=51.03 Aligned_cols=21 Identities=29% Similarity=0.700 Sum_probs=19.3
Q ss_pred EEEEEcCCCCchHHHHHHhhc
Q 017924 21 TVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g 41 (363)
.|+|+|.+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999963
No 461
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.02 E-value=0.0089 Score=52.54 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..++|.|+.|+||||+++.++...
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999997543
No 462
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.02 E-value=0.0029 Score=58.52 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCchHHHHHHhhcccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~~ 44 (363)
.+..++|+|+||+|||||++.|+|...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999997654
No 463
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.01 E-value=0.004 Score=51.88 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|.+||||||+.+.|...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999743
No 464
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.00 E-value=0.014 Score=48.85 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
...|+|+|++|+|||+|+++|+..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999999999854
No 465
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.99 E-value=0.0039 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g 41 (363)
...|+|+|..||||||+.+.|..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999974
No 466
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.99 E-value=0.004 Score=47.92 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
-+|+|+|..||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999974
No 467
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.98 E-value=0.021 Score=55.11 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.-|+|.|++|+|||+|.++|++..
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 679999999999999999998654
No 468
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.93 E-value=0.0038 Score=50.40 Aligned_cols=22 Identities=27% Similarity=0.518 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
.+|+|+|..||||||+.+.|+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999964
No 469
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.92 E-value=0.015 Score=56.55 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
....++|+|++|+|||++++.|+...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999998654
No 470
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.90 E-value=0.0029 Score=53.57 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=18.2
Q ss_pred CccEEEEEcCCCCchHHHHHHhhc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g 41 (363)
....|+|.|..||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
No 471
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.90 E-value=0.0039 Score=49.80 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
.|+|.|.+||||||+.+.|.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999753
No 472
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.89 E-value=0.0054 Score=48.17 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+..|+|+|++|+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998743
No 473
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.87 E-value=0.0047 Score=49.34 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHhhcc
Q 017924 21 TVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 21 ~i~lvG~~g~GKSTli~~l~g~ 42 (363)
+|+|+|++||||+|..+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999744
No 474
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.86 E-value=0.005 Score=51.00 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g 41 (363)
...|+|.|..||||||+.+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999974
No 475
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.84 E-value=0.033 Score=49.33 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
...|+|+|++|+|||+|+++|+..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999744
No 476
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.81 E-value=0.0059 Score=47.82 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
...|+|+|+.|+|||||++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999997543
No 477
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.80 E-value=0.0034 Score=61.49 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
+..++|+|.||||||||++.|+
T Consensus 668 GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 668 GVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 4589999999999999999864
No 478
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.76 E-value=0.0058 Score=51.49 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
...|+|+|..||||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
No 479
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.75 E-value=0.0054 Score=50.42 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=18.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
+..++|+|++|+|||||+..++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999976654
No 480
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.73 E-value=0.0066 Score=48.81 Aligned_cols=23 Identities=22% Similarity=0.595 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|.|+|++||||+|..+.|+..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999999999744
No 481
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.70 E-value=0.033 Score=47.40 Aligned_cols=87 Identities=13% Similarity=0.099 Sum_probs=48.5
Q ss_pred ccCCCccEEEEEeecCCCC-CHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCcchhhHHHHhccCCCchHHHHHHhc
Q 017924 99 MAKDGIHAFLVVFSVTNRF-SQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (363)
Q Consensus 99 ~~~~~~~~~l~v~~~~~~~-~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 176 (363)
.++.++|++++|+|+++.. +.... .++..+.. .. .++++|+||+|+... ...++ ...+....
T Consensus 80 ~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~--~piilv~NK~DL~~~--~~v~~---------~~~~~~~~ 143 (301)
T 1u0l_A 80 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NE--LETVMVINKMDLYDE--DDLRK---------VRELEEIY 143 (301)
T ss_dssp TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TT--CEEEEEECCGGGCCH--HHHHH---------HHHHHHHH
T ss_pred cccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CC--CCEEEEEeHHHcCCc--hhHHH---------HHHHHHHH
Confidence 3456899999999998443 33332 23333322 12 389999999998754 22211 11122222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHH
Q 017924 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 205 (363)
...+ ....+|++++.++.+++..+.
T Consensus 144 ~~~~----~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 144 SGLY----PIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp TTTS----CEEECCTTTCTTHHHHHHHHS
T ss_pred hhhC----cEEEEECCCCcCHHHHHHHhc
Confidence 2111 112567777788888776643
No 482
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.66 E-value=0.0071 Score=51.65 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|++|||||||...|+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
No 483
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.66 E-value=0.0024 Score=61.86 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCchHHHHHH-hhc
Q 017924 19 ERTVVLLGRTGNGKSATGNS-ILG 41 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~-l~g 41 (363)
+..++|+|.||||||||++. |+|
T Consensus 523 Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 523 GVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp SSEEEEECCTTSSHHHHCCCCCHH
T ss_pred CCEEEEEcCCCcCHHHHHHHHHHH
Confidence 46899999999999999996 654
No 484
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.65 E-value=0.0067 Score=48.25 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..|+|+|++|+|||+|+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998554
No 485
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.65 E-value=0.0062 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.423 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
...|+|+|++|+|||+|+++|++..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh
Confidence 3579999999999999999998543
No 486
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.64 E-value=0.0068 Score=49.51 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
....|+|+|++|+|||||++.|+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998554
No 487
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.63 E-value=0.0022 Score=59.29 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCchHHHHHHhh
Q 017924 20 RTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~ 40 (363)
+..+|+|+||+|||||+++|.
T Consensus 61 g~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 61 GFCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp SEEEEEESHHHHHHHHTHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 588999999999999999984
No 488
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.62 E-value=0.007 Score=52.25 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCchHHHHHHhhccc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
...|+|+|.+|+||||+.+.|++..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3469999999999999999998654
No 489
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.62 E-value=0.008 Score=51.55 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCchHHHHHHhhccc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
..|+|+|++|+|||||...|+...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 479999999999999999998553
No 490
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.61 E-value=0.0058 Score=56.69 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
++..++|+|++|+|||||+++|++..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998654
No 491
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.58 E-value=0.0064 Score=53.84 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
+..++|+|++|+|||||+..|+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHH
Confidence 4589999999999999999654
No 492
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.58 E-value=0.0077 Score=51.01 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|++|+|||||...|+..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 57899999999999999999744
No 493
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=95.57 E-value=0.017 Score=45.79 Aligned_cols=103 Identities=10% Similarity=0.083 Sum_probs=54.9
Q ss_pred HHHHHhccCCCccEEEEEeecCCCCCHHHHHHHHHHHHHhccc---cccceEEEEeCC-CCCCcchhhHHHHhccCCCch
Q 017924 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN---VFDYMIVVFTGG-DDLEDHEKTLEDFLGHECPKP 168 (363)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~i~v~n~~-D~~~~~~~~l~~~~~~~~~~~ 168 (363)
++..+..++.+.|++|||+|.+++-..+.+..+..+..++..+ ...+++|+.||. |.... ....+....
T Consensus 115 lRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e~----- 187 (227)
T 3l82_B 115 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHE----- 187 (227)
T ss_dssp --CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHHH-----
T ss_pred HHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHHH-----
Confidence 4444445567889999999986332222444444444433222 123788888985 55433 222222222
Q ss_pred HHHHHHhcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 017924 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (363)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 208 (363)
+. +......+++ ..+++.++.++.+-+++|...+
T Consensus 188 L~--L~~l~R~W~I----q~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 188 LH--LNLLNHPWLV----QDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp TT--GGGGCSCEEE----EEEETTTCTTHHHHHHHHTTTT
T ss_pred cC--CcCCCCCEEE----EEeECCCCcCHHHHHHHHHHHH
Confidence 11 0111233333 3567888899999888876544
No 494
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.53 E-value=0.052 Score=46.13 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=31.7
Q ss_pred cCCCccEEEEEeecCCC-CCHHHH-HHHHHHHHHhccccccceEEEEeCCCCCCc
Q 017924 100 AKDGIHAFLVVFSVTNR-FSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (363)
Q Consensus 100 ~~~~~~~~l~v~~~~~~-~~~~~~-~~l~~~~~~~~~~~~~~~i~v~n~~D~~~~ 152 (363)
.+.++|.+++|+|+++. ++.... .++..+.. .+ .++++|+||+|+...
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-~~----~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-FK----VEPVIVFNKIDLLNE 125 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-TT----CEEEEEECCGGGCCH
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-CC----CCEEEEEEcccCCCc
Confidence 45688999999999844 354432 23333322 12 289999999999754
No 495
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.52 E-value=0.0036 Score=61.11 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCchHHHHHHhh
Q 017924 19 ERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~ 40 (363)
+..++|+|.||||||||++.|+
T Consensus 650 Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 650 GTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SSEEECCBCTTSSHHHHHTTTH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 4589999999999999999864
No 496
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.48 E-value=0.0059 Score=54.24 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCchHHHHHHhhccc
Q 017924 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (363)
Q Consensus 18 ~~~~i~lvG~~g~GKSTli~~l~g~~ 43 (363)
.+..++|+|++|+|||||++.|++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998654
No 497
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.48 E-value=0.0076 Score=51.84 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCchHHHHHHhhcc
Q 017924 20 RTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
..|+|+|++|||||||...|+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 47999999999999999998744
No 498
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.47 E-value=0.0077 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCchHHHHHHhhc
Q 017924 20 RTVVLLGRTGNGKSATGNSILG 41 (363)
Q Consensus 20 ~~i~lvG~~g~GKSTli~~l~g 41 (363)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 499
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.46 E-value=0.0079 Score=51.09 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCchHHHHHHhhcc
Q 017924 19 ERTVVLLGRTGNGKSATGNSILGR 42 (363)
Q Consensus 19 ~~~i~lvG~~g~GKSTli~~l~g~ 42 (363)
...|+|+|++|+|||||+++|++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 468999999999999999999854
No 500
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.46 E-value=0.007 Score=47.14 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=0.0
Q ss_pred CCccEEEEEcCCCCchHHHHHHhh
Q 017924 17 NGERTVVLLGRTGNGKSATGNSIL 40 (363)
Q Consensus 17 ~~~~~i~lvG~~g~GKSTli~~l~ 40 (363)
.....|+|+|++|+|||+|++.++
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHH
Done!