BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017925
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The
Escherichia Coli Chaperone Protein Dnaj
Length = 79
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 79 KEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 138
KE + LE C+VC G+GAK G++ + C TC G GQV Q G F+ CP C G
Sbjct: 4 KEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQV----QMRQGFFAVQQTCPHCQGR 59
Query: 139 GEVISEYCRKCSGEGRI 155
G +I + C KC G GR+
Sbjct: 60 GTLIKDPCNKCHGHGRV 76
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 17/213 (7%)
Query: 58 KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMR 117
+G+D++++I E G + L+ C+ C G G K G+ ++ C++C G+G
Sbjct: 10 RGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFV 68
Query: 118 TDQTPFGLFSQVSVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPPGVSTGSIL 175
T Q + + C C G G++I + C+ C+G+ +K ++V V PG+ G
Sbjct: 69 TRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQ-- 126
Query: 176 RVVXXXXXXXXXXXXXDLYVYLDVEEIP--GIQRDGIDLFSTISISYLDAIMGTVVKVKT 233
R+V V++ V E P +RDG DL I L AI G ++
Sbjct: 127 RIVFKGEADQAPDVIPGDVVFI-VSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEH 185
Query: 234 VEGISELQVPPGTQPGDVL------VLAKKGAP 260
V G L+V G PG+V+ V+ KG P
Sbjct: 186 VSG-DWLKV--GIVPGEVIAPGMRKVIEGKGMP 215
>pdb|2CTT|A Chain A, Solution Structure Of Zinc Finger Domain From Human Dnaj
Subfamily A Menber 3
Length = 104
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 68 LEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFS 127
L F+++ G KEF ++ ++TCE C G G + G+K++ C CGG G M T T G F
Sbjct: 10 LTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSG--METINT--GPFV 65
Query: 128 QVSVCPSCGGEGEVISEYCRKCSGEGRIRLKK 159
S C CGG G +I C C G G+ + KK
Sbjct: 66 MRSTCRRCGGRGSIIISPCVVCRGAGQAKQKK 97
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 159 KNIKVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTISI 218
K + VK+P GV G +R+ DL++ + + P G +L + +
Sbjct: 181 KTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPL 240
Query: 219 SYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVT 278
+ +A +G V V T++ L VPPG+Q G L + KG L + GD +K+
Sbjct: 241 APWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKG---LVSKTHTGDLFAVIKIV 297
Query: 279 IPNR 282
+P +
Sbjct: 298 MPTK 301
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Query: 158 KKNIKVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTIS 217
K I +++ PG G+ + L + + P +RDG DL T+
Sbjct: 35 KTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLP 94
Query: 218 ISYLDAIMGTVVKVKTVEG----ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLF 273
+S+ ++++G ++T++G +S +Q QP +G P PS RG+ +
Sbjct: 95 LSFKESLLGFSKTIQTIDGRTLPLSRVQ---PVQPSQTSTYPGQGMPTPKNPSQRGNLIV 151
Query: 274 TVKVTIP 280
KV P
Sbjct: 152 KYKVDYP 158
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Query: 158 KKNIKVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIPGIQRDGIDLFSTIS 217
K I +++ PG G+ + L + + P +RDG DL T+
Sbjct: 35 KTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLP 94
Query: 218 ISYLDAIMGTVVKVKTVEG----ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLF 273
+S+ ++++G ++T++G +S +Q QP +G P PS RG+ +
Sbjct: 95 LSFKESLLGFSKTIQTIDGRTLPLSRVQ---PVQPSQTSTYPGQGMPTPKNPSQRGNLIV 151
Query: 274 TVKVTIP 280
KV P
Sbjct: 152 KYKVDYP 158
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 4/140 (2%)
Query: 147 RKCSGEGRIRLKKNI-KVKVPPGVSTGSILRVVXXXXXXXXXXXXXDLYVYLDVEEIPGI 205
RK E ++R ++NI +V++ PG G+ L DL + + + P
Sbjct: 29 RKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRF 88
Query: 206 QRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPG--TQPGDVLVLAKKGAPKLN 263
RD L ++I + A+ G V T++ LQ+P P ++ +G P N
Sbjct: 89 TRDDCHLIXKVTIPLVRALTGFTCPVTTLDN-RNLQIPIKEIVNPKTRKIVPNEGXPIKN 147
Query: 264 KPSIRGDHLFTVKVTIPNRI 283
+P +GD + + P +
Sbjct: 148 QPGQKGDLILEFDICFPKSL 167
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 206 QRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS-ELQVPPGTQPGDVLVLAKKGAPKLNK 264
+RDG D+ IS +A+ G V V T++G + + +PG + +G P
Sbjct: 98 KRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKT 157
Query: 265 PSIRGDHLFTVKVTIPNRI 283
P RGD + +V P RI
Sbjct: 158 PEKRGDLIIEFEVIFPERI 176
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 206 QRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS-ELQVPPGTQPGDVLVLAKKGAPKLNK 264
+RDG D+ IS +A+ G V V T++G + + +PG + +G P
Sbjct: 91 KRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKT 150
Query: 265 PSIRGDHLFTVKVTIPNRI 283
P RGD + +V P RI
Sbjct: 151 PEKRGDLIIEFEVIFPERI 169
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 206 QRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS-ELQVPPGTQPGDVLVLAKKGAPKLNK 264
+RDG D+ IS +A+ G V V T++G + + +PG + +G P
Sbjct: 89 KRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKT 148
Query: 265 PSIRGDHLFTVKVTIPNRI 283
P RGD + +V P RI
Sbjct: 149 PEKRGDLIIEFEVIFPERI 167
>pdb|3I38|A Chain A, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|B Chain B, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|C Chain C, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|D Chain D, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|E Chain E, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|F Chain F, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|G Chain G, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|H Chain H, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|I Chain I, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|J Chain J, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|K Chain K, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|L Chain L, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Length = 109
Score = 31.6 bits (70), Expect = 0.63, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 209 GIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIR 268
G +L + ++ +A +G V V T++ L VPPG+Q G L + KG L +
Sbjct: 11 GHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKG---LVSKTHT 67
Query: 269 GDHLFTVKVTIPNR 282
GD +K+ P +
Sbjct: 68 GDLFAVIKIVXPTK 81
>pdb|3LCZ|A Chain A, B.Licheniformis Anti-Trap Can Assemble Into Two Types Of
Dodecameric Particles With The Same Symmetry But
Inverted Orientation Of Trimers
pdb|3LCZ|B Chain B, B.Licheniformis Anti-Trap Can Assemble Into Two Types Of
Dodecameric Particles With The Same Symmetry But
Inverted Orientation Of Trimers
pdb|3LCZ|C Chain C, B.Licheniformis Anti-Trap Can Assemble Into Two Types Of
Dodecameric Particles With The Same Symmetry But
Inverted Orientation Of Trimers
pdb|3LCZ|D Chain D, B.Licheniformis Anti-Trap Can Assemble Into Two Types Of
Dodecameric Particles With The Same Symmetry But
Inverted Orientation Of Trimers
pdb|3LD0|A Chain A, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|B Chain B, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|C Chain C, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|D Chain D, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|E Chain E, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|F Chain F, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|G Chain G, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|H Chain H, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|I Chain I, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|J Chain J, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|K Chain K, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|L Chain L, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|M Chain M, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|N Chain N, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|O Chain O, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|P Chain P, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|Q Chain Q, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|R Chain R, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|S Chain S, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|T Chain T, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|U Chain U, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|V Chain V, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|W Chain W, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|X Chain X, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|Y Chain Y, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|Z Chain Z, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|1 Chain 1, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|2 Chain 2, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|3 Chain 3, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|4 Chain 4, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|5 Chain 5, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|6 Chain 6, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|7 Chain 7, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|8 Chain 8, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|9 Chain 9, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|AA Chain a, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|BB Chain b, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|CC Chain c, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|DD Chain d, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|EE Chain e, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|FF Chain f, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|GG Chain g, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|HH Chain h, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|II Chain i, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|JJ Chain j, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|KK Chain k, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|LL Chain l, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
pdb|3LD0|MM Chain m, Crystal Structure Of B.Licheniformis Anti-Trap Protein, An
Antagonist Of Trap-Rna Interactions
Length = 53
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 130 SVCPSCGGEGEVISEYCRKCSGEGRI 155
+ CP+C G G E C KC G+G I
Sbjct: 10 TTCPNCNGSGREEPEPCPKCLGKGVI 35
>pdb|1US1|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1US1|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|2Y73|A Chain A, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y73|B Chain B, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y74|A Chain A, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
pdb|2Y74|B Chain B, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
Length = 763
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 318 SPEASQVGTVAEKNEEPE-----DQNDPWKKLKDFAGSVAN 353
S E Q+ K EEP +QNDPW DF+ + N
Sbjct: 626 SWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFSDFINN 666
>pdb|3ALA|A Chain A, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|B Chain B, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|C Chain C, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|D Chain D, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|E Chain E, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|F Chain F, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|G Chain G, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
Length = 748
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 318 SPEASQVGTVAEKNEEPE-----DQNDPWKKLKDFAGSVAN 353
S E Q+ K EEP +QNDPW DF+ + N
Sbjct: 611 SWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFSDFINN 651
>pdb|2C10|A Chain A, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|B Chain B, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|C Chain C, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|D Chain D, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|A Chain A, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|B Chain B, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|C Chain C, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|D Chain D, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
Length = 735
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 318 SPEASQVGTVAEKNEEPE-----DQNDPWKKLKDFAGSVAN 353
S E Q+ K EEP +QNDPW DF+ + N
Sbjct: 598 SWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFSDFINN 638
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,811,196
Number of Sequences: 62578
Number of extensions: 360356
Number of successful extensions: 630
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 23
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)