Query 017925
Match_columns 363
No_of_seqs 344 out of 1945
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:37:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 1.3E-80 2.9E-85 603.9 30.2 285 1-298 65-351 (371)
2 PRK14296 chaperone protein Dna 100.0 4.9E-67 1.1E-71 518.9 29.6 285 1-298 64-362 (372)
3 PRK14276 chaperone protein Dna 100.0 1.2E-66 2.7E-71 517.7 31.6 285 1-297 64-356 (380)
4 PRK14278 chaperone protein Dna 100.0 2.2E-66 4.7E-71 515.4 33.3 286 1-298 63-351 (378)
5 PRK14297 chaperone protein Dna 100.0 1.6E-66 3.5E-71 517.1 32.2 288 1-298 65-359 (380)
6 PRK14298 chaperone protein Dna 100.0 1.6E-66 3.6E-71 516.0 31.8 285 1-299 65-353 (377)
7 PRK14280 chaperone protein Dna 100.0 2.3E-66 5.1E-71 515.1 31.9 286 1-298 64-354 (376)
8 PRK14287 chaperone protein Dna 100.0 2.4E-66 5.3E-71 514.0 31.4 285 1-298 64-349 (371)
9 PRK14277 chaperone protein Dna 100.0 3E-66 6.5E-71 515.9 31.9 289 1-298 66-366 (386)
10 PRK14281 chaperone protein Dna 100.0 2.7E-65 5.8E-70 510.6 32.9 239 57-297 134-372 (397)
11 PRK14284 chaperone protein Dna 100.0 2.2E-65 4.8E-70 510.5 31.0 238 56-298 128-367 (391)
12 PRK14286 chaperone protein Dna 100.0 5.2E-65 1.1E-69 504.6 29.6 287 1-299 65-359 (372)
13 PRK14288 chaperone protein Dna 100.0 8.5E-65 1.8E-69 502.6 30.0 282 1-298 64-346 (369)
14 PRK14285 chaperone protein Dna 100.0 8.7E-64 1.9E-68 494.8 29.0 285 1-301 64-357 (365)
15 PTZ00037 DnaJ_C chaperone prot 100.0 5.4E-64 1.2E-68 502.6 27.4 275 1-297 85-366 (421)
16 PRK14300 chaperone protein Dna 100.0 4.6E-63 9.9E-68 490.9 30.9 285 1-297 63-352 (372)
17 PRK14282 chaperone protein Dna 100.0 5.7E-63 1.2E-67 489.9 30.7 288 1-299 66-365 (369)
18 PRK14294 chaperone protein Dna 100.0 4.5E-63 9.9E-68 490.1 29.1 284 1-298 65-351 (366)
19 PRK14295 chaperone protein Dna 100.0 6.4E-63 1.4E-67 492.1 29.8 237 56-298 136-373 (389)
20 PRK14301 chaperone protein Dna 100.0 4.6E-63 9.9E-68 490.9 28.4 280 1-297 65-350 (373)
21 PRK14279 chaperone protein Dna 100.0 5E-63 1.1E-67 493.3 28.4 237 56-298 143-379 (392)
22 PRK10767 chaperone protein Dna 100.0 2.6E-62 5.6E-67 485.8 30.9 283 1-297 65-348 (371)
23 TIGR02349 DnaJ_bact chaperone 100.0 1.9E-62 4.1E-67 484.1 29.7 287 1-297 60-353 (354)
24 PRK14289 chaperone protein Dna 100.0 2.9E-62 6.3E-67 487.6 30.9 294 1-297 66-364 (386)
25 PRK14292 chaperone protein Dna 100.0 1.9E-61 4E-66 479.6 31.7 286 1-298 62-349 (371)
26 PRK14293 chaperone protein Dna 100.0 1.6E-61 3.5E-66 480.3 30.7 293 1-299 63-356 (374)
27 PRK14283 chaperone protein Dna 100.0 1.9E-60 4.1E-65 473.3 30.1 241 56-297 116-356 (378)
28 PRK14291 chaperone protein Dna 100.0 1.7E-60 3.7E-65 474.0 29.8 293 1-299 63-372 (382)
29 PRK14290 chaperone protein Dna 100.0 6.7E-60 1.4E-64 467.4 30.4 289 1-299 65-358 (365)
30 KOG0712 Molecular chaperone (D 100.0 8.7E-52 1.9E-56 397.3 19.5 269 1-294 62-336 (337)
31 PRK14299 chaperone protein Dna 100.0 6.1E-42 1.3E-46 329.6 23.1 214 1-298 64-287 (291)
32 PRK10266 curved DNA-binding pr 100.0 4.2E-41 9.1E-46 326.0 24.6 202 24-298 93-294 (306)
33 TIGR03835 termin_org_DnaJ term 100.0 7.3E-33 1.6E-37 285.8 18.2 161 58-281 655-816 (871)
34 KOG0715 Molecular chaperone (D 99.9 1.6E-23 3.6E-28 200.9 8.1 186 1-222 103-288 (288)
35 PF01556 CTDII: DnaJ C termina 99.9 6.6E-23 1.4E-27 161.1 6.4 80 211-290 1-81 (81)
36 KOG0713 Molecular chaperone (D 99.8 9E-20 2E-24 174.4 1.2 250 1-285 77-328 (336)
37 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.6 5.3E-16 1.2E-20 117.2 6.3 65 89-153 1-66 (66)
38 PRK10767 chaperone protein Dna 99.6 1.2E-14 2.5E-19 144.8 10.9 133 72-217 146-346 (371)
39 COG0484 DnaJ DnaJ-class molecu 99.5 9.1E-15 2E-19 143.3 7.4 133 70-215 144-346 (371)
40 PRK14288 chaperone protein Dna 99.5 6.1E-14 1.3E-18 139.5 11.5 142 58-213 129-339 (369)
41 PRK14282 chaperone protein Dna 99.5 3.4E-14 7.5E-19 141.4 8.6 146 58-216 141-360 (369)
42 PRK14290 chaperone protein Dna 99.5 8.6E-14 1.9E-18 138.3 9.7 131 72-216 153-353 (365)
43 PRK14298 chaperone protein Dna 99.4 1.5E-13 3.2E-18 137.2 8.2 134 70-216 143-348 (377)
44 PRK14294 chaperone protein Dna 99.4 1.9E-13 4.1E-18 136.0 8.4 120 86-217 161-348 (366)
45 PRK14285 chaperone protein Dna 99.4 2.4E-13 5.2E-18 135.1 8.1 133 70-215 148-349 (365)
46 PRK14300 chaperone protein Dna 99.4 4.9E-13 1.1E-17 133.2 8.7 129 72-213 149-346 (372)
47 PRK14284 chaperone protein Dna 99.4 6.7E-13 1.5E-17 133.1 9.4 146 58-216 147-363 (391)
48 PRK14301 chaperone protein Dna 99.4 6E-13 1.3E-17 132.6 8.2 132 71-215 147-346 (373)
49 PRK14287 chaperone protein Dna 99.4 7.4E-13 1.6E-17 131.9 7.8 134 70-216 140-345 (371)
50 PRK14278 chaperone protein Dna 99.4 1E-12 2.2E-17 131.2 8.9 130 71-213 142-344 (378)
51 PRK14286 chaperone protein Dna 99.4 1.2E-12 2.6E-17 130.5 9.1 144 58-214 139-352 (372)
52 PRK14292 chaperone protein Dna 99.4 1.4E-12 3E-17 130.1 8.3 145 58-214 128-343 (371)
53 TIGR02349 DnaJ_bact chaperone 99.4 1.3E-12 2.9E-17 129.3 7.9 116 86-213 160-347 (354)
54 PRK14276 chaperone protein Dna 99.4 1.5E-12 3.2E-17 130.2 8.1 129 71-212 149-349 (380)
55 PRK14281 chaperone protein Dna 99.3 2E-12 4.3E-17 129.9 8.5 141 58-212 152-365 (397)
56 PRK14279 chaperone protein Dna 99.3 2.5E-12 5.5E-17 128.9 8.3 142 57-212 161-371 (392)
57 PRK14280 chaperone protein Dna 99.3 3.5E-12 7.7E-17 127.3 8.8 129 71-212 146-346 (376)
58 PRK14293 chaperone protein Dna 99.3 2.7E-12 5.9E-17 128.0 7.9 133 71-216 146-351 (374)
59 PRK14297 chaperone protein Dna 99.3 3.2E-12 7E-17 127.7 8.5 129 71-212 151-351 (380)
60 PRK14277 chaperone protein Dna 99.3 4.7E-12 1E-16 126.8 8.9 143 58-213 144-359 (386)
61 PRK14289 chaperone protein Dna 99.3 4.6E-12 9.9E-17 126.9 8.6 114 85-210 170-355 (386)
62 PRK14295 chaperone protein Dna 99.3 6.2E-12 1.3E-16 126.0 8.5 141 58-212 155-365 (389)
63 PRK14283 chaperone protein Dna 99.3 8.2E-12 1.8E-16 124.8 8.3 143 58-213 135-350 (378)
64 PRK14296 chaperone protein Dna 99.3 8.2E-12 1.8E-16 124.5 8.2 142 58-212 138-354 (372)
65 PRK14291 chaperone protein Dna 99.3 2.7E-11 5.9E-16 121.2 11.0 106 85-203 172-346 (382)
66 PTZ00037 DnaJ_C chaperone prot 99.2 1.7E-11 3.6E-16 123.9 8.7 128 70-209 152-356 (421)
67 PRK14299 chaperone protein Dna 98.9 1.6E-09 3.4E-14 104.8 7.2 81 191-284 116-197 (291)
68 PF01556 CTDII: DnaJ C termina 98.9 1.3E-09 2.8E-14 85.5 5.4 49 159-207 27-76 (81)
69 PLN03165 chaperone protein dna 98.9 3.4E-09 7.3E-14 87.7 7.8 77 59-156 23-99 (111)
70 PRK10266 curved DNA-binding pr 98.7 2.1E-08 4.4E-13 97.7 7.5 74 207-282 115-202 (306)
71 KOG0712 Molecular chaperone (D 98.6 1E-07 2.2E-12 92.9 7.2 44 159-203 279-324 (337)
72 KOG0714 Molecular chaperone (D 98.5 1.4E-06 3E-11 82.4 12.5 104 157-261 198-305 (306)
73 TIGR02642 phage_xxxx uncharact 98.4 3.5E-07 7.7E-12 82.4 4.0 49 129-178 99-149 (186)
74 TIGR03835 termin_org_DnaJ term 98.0 1.8E-05 3.8E-10 84.0 8.5 71 57-201 743-813 (871)
75 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.9 9.8E-06 2.1E-10 61.1 3.3 44 85-139 14-66 (66)
76 COG1107 Archaea-specific RecJ- 97.8 1.8E-05 3.9E-10 81.2 3.9 69 87-156 3-81 (715)
77 KOG2813 Predicted molecular ch 97.4 0.00012 2.7E-09 70.2 3.6 61 86-164 198-277 (406)
78 PLN03165 chaperone protein dna 96.9 0.00079 1.7E-08 55.9 3.5 52 70-143 43-100 (111)
79 TIGR02642 phage_xxxx uncharact 96.4 0.002 4.3E-08 58.3 2.6 31 103-143 99-129 (186)
80 COG1107 Archaea-specific RecJ- 96.4 0.0025 5.5E-08 65.9 3.3 46 103-158 2-68 (715)
81 KOG2813 Predicted molecular ch 94.6 0.016 3.4E-07 56.1 1.4 39 84-143 232-270 (406)
82 KOG0715 Molecular chaperone (D 93.2 0.049 1.1E-06 52.8 2.0 69 61-143 158-231 (288)
83 TIGR00310 ZPR1_znf ZPR1 zinc f 89.3 3.7 8.1E-05 37.4 9.9 26 227-256 74-100 (192)
84 TIGR00340 zpr1_rel ZPR1-relate 89.3 2.2 4.8E-05 37.9 8.2 26 227-256 72-98 (163)
85 KOG2824 Glutaredoxin-related p 89.1 0.45 9.9E-06 45.4 3.9 51 87-150 230-280 (281)
86 KOG2824 Glutaredoxin-related p 84.2 0.97 2.1E-05 43.2 3.2 38 104-156 230-275 (281)
87 PRK14714 DNA polymerase II lar 82.5 1.4 3E-05 50.2 4.1 66 67-153 641-719 (1337)
88 cd03031 GRX_GRX_like Glutaredo 82.5 1.1 2.3E-05 39.2 2.7 45 87-140 100-144 (147)
89 cd03031 GRX_GRX_like Glutaredo 78.9 2.5 5.4E-05 36.9 3.8 38 103-155 99-145 (147)
90 TIGR00630 uvra excinuclease AB 77.1 1.6 3.4E-05 48.9 2.5 19 277-295 855-874 (924)
91 PRK04023 DNA polymerase II lar 76.4 1.8 3.8E-05 48.3 2.5 65 69-154 609-674 (1121)
92 smart00709 Zpr1 Duplicated dom 75.9 13 0.00029 32.8 7.5 37 105-141 2-41 (160)
93 TIGR00630 uvra excinuclease AB 74.7 1.2 2.6E-05 49.8 0.8 28 131-158 738-774 (924)
94 COG2214 CbpA DnaJ-class molecu 72.9 3.9 8.4E-05 36.3 3.5 48 163-212 180-227 (237)
95 COG1198 PriA Primosomal protei 71.5 2.6 5.7E-05 45.9 2.3 51 85-152 434-484 (730)
96 PF03833 PolC_DP2: DNA polymer 70.1 1.4 3.1E-05 48.1 0.0 65 70-155 638-704 (900)
97 PRK00349 uvrA excinuclease ABC 67.7 3.4 7.4E-05 46.5 2.3 20 277-296 857-877 (943)
98 PF03589 Antiterm: Antitermina 66.6 1.5 3.2E-05 35.5 -0.6 38 104-141 6-44 (95)
99 COG0178 UvrA Excinuclease ATPa 65.2 6.2 0.00013 43.4 3.5 32 131-164 732-772 (935)
100 PRK14873 primosome assembly pr 61.7 6.1 0.00013 42.8 2.8 50 85-152 382-431 (665)
101 PRK05978 hypothetical protein; 61.5 3.8 8.2E-05 35.9 0.9 25 105-136 35-59 (148)
102 PRK00635 excinuclease ABC subu 60.9 5.1 0.00011 47.9 2.1 24 269-295 1721-1745(1809)
103 PRK00349 uvrA excinuclease ABC 59.9 6 0.00013 44.5 2.4 28 131-158 740-776 (943)
104 TIGR00595 priA primosomal prot 57.7 6.1 0.00013 41.3 1.9 51 85-152 212-262 (505)
105 PRK03564 formate dehydrogenase 55.9 11 0.00025 36.8 3.3 27 86-112 187-221 (309)
106 TIGR03655 anti_R_Lar restricti 53.9 19 0.00042 25.5 3.4 37 104-141 2-38 (53)
107 smart00709 Zpr1 Duplicated dom 53.6 76 0.0016 28.1 7.9 26 227-256 75-100 (160)
108 PF09538 FYDLN_acid: Protein o 52.3 6.9 0.00015 32.4 1.0 24 86-109 9-32 (108)
109 PRK05580 primosome assembly pr 52.1 7.9 0.00017 42.0 1.7 50 86-152 381-430 (679)
110 cd02639 R3H_RRM R3H domain of 51.9 23 0.00051 26.1 3.6 27 274-300 17-43 (60)
111 PF07092 DUF1356: Protein of u 51.4 5.5 0.00012 37.5 0.3 14 104-117 39-52 (238)
112 PF07151 DUF1391: Protein of u 51.3 7 0.00015 26.9 0.7 13 351-363 36-48 (49)
113 PRK14559 putative protein seri 47.1 8.7 0.00019 41.4 1.0 49 87-152 2-50 (645)
114 KOG2724 Nuclear pore complex c 45.3 23 0.0005 36.0 3.6 83 193-276 371-455 (487)
115 PF03367 zf-ZPR1: ZPR1 zinc-fi 44.8 32 0.00069 30.4 4.1 33 104-136 2-37 (161)
116 COG0178 UvrA Excinuclease ATPa 44.7 12 0.00027 41.2 1.7 36 104-143 731-767 (935)
117 PF08792 A2L_zn_ribbon: A2L zi 44.1 23 0.0005 22.9 2.3 12 104-115 4-15 (33)
118 PF08774 VRR_NUC: VRR-NUC doma 43.5 34 0.00074 27.1 3.8 42 256-297 45-89 (100)
119 PRK14051 negative regulator Gr 43.4 65 0.0014 26.7 5.3 70 191-261 48-119 (123)
120 PF07092 DUF1356: Protein of u 42.9 9.6 0.00021 35.9 0.5 14 130-143 39-52 (238)
121 cd06007 R3H_DEXH_helicase R3H 41.9 39 0.00084 24.8 3.5 27 274-300 16-42 (59)
122 TIGR02300 FYDLN_acid conserved 41.4 14 0.0003 31.5 1.2 25 86-110 9-33 (129)
123 cd02641 R3H_Smubp-2_like R3H d 41.3 36 0.00079 24.9 3.3 26 275-300 18-43 (60)
124 PRK00564 hypA hydrogenase nick 39.9 86 0.0019 26.1 5.8 10 84-93 69-78 (117)
125 cd02640 R3H_NRF R3H domain of 39.7 42 0.00092 24.6 3.4 27 274-300 17-43 (60)
126 TIGR01562 FdhE formate dehydro 39.7 29 0.00062 34.0 3.3 26 87-112 185-219 (305)
127 PRK00635 excinuclease ABC subu 38.4 11 0.00025 45.1 0.3 28 131-158 1609-1645(1809)
128 COG3128 PiuC Uncharacterized i 37.3 1.5E+02 0.0032 27.3 7.0 85 207-296 113-197 (229)
129 TIGR00757 RNaseEG ribonuclease 37.1 21 0.00046 36.4 2.0 14 130-143 391-404 (414)
130 PF04246 RseC_MucC: Positive r 36.7 50 0.0011 27.9 4.0 21 158-178 41-61 (135)
131 PRK12336 translation initiatio 36.3 1.9E+02 0.0041 26.5 7.9 10 84-93 96-105 (201)
132 PF13453 zf-TFIIB: Transcripti 35.4 25 0.00054 23.5 1.5 8 130-137 20-27 (41)
133 PRK00464 nrdR transcriptional 32.6 46 0.00099 29.3 3.1 33 105-137 2-36 (154)
134 PF12991 DUF3875: Domain of un 32.6 50 0.0011 23.9 2.7 24 267-290 26-51 (54)
135 PRK14873 primosome assembly pr 32.1 39 0.00084 36.7 3.1 41 85-139 391-432 (665)
136 PF07295 DUF1451: Protein of u 31.8 38 0.00082 29.5 2.4 15 96-110 105-119 (146)
137 PF14353 CpXC: CpXC protein 31.6 32 0.00069 28.8 1.9 11 130-140 39-49 (128)
138 PF09855 DUF2082: Nucleic-acid 30.7 66 0.0014 24.0 3.2 7 130-136 37-43 (64)
139 PRK12380 hydrogenase nickel in 30.0 73 0.0016 26.4 3.8 11 84-94 68-78 (113)
140 TIGR00354 polC DNA polymerase, 29.9 55 0.0012 36.8 3.7 23 69-92 608-631 (1095)
141 PF11983 DUF3484: Domain of un 29.7 56 0.0012 25.1 2.8 20 332-351 52-71 (73)
142 smart00440 ZnF_C2C2 C2C2 Zinc 29.5 71 0.0015 21.4 2.9 32 105-136 2-35 (40)
143 PF07191 zinc-ribbons_6: zinc- 29.4 83 0.0018 24.0 3.6 50 88-151 3-58 (70)
144 PF13719 zinc_ribbon_5: zinc-r 29.1 46 0.00099 21.8 1.9 7 130-136 26-32 (37)
145 PHA01735 hypothetical protein 28.5 25 0.00054 26.7 0.6 10 353-362 36-45 (76)
146 PF01096 TFIIS_C: Transcriptio 28.3 59 0.0013 21.6 2.4 32 105-136 2-35 (39)
147 COG5349 Uncharacterized protei 28.1 17 0.00038 30.6 -0.3 25 105-136 23-47 (126)
148 PF10080 DUF2318: Predicted me 27.7 44 0.00094 27.4 2.0 11 105-115 37-47 (102)
149 PF03682 UPF0158: Uncharacteri 27.7 85 0.0018 27.8 4.0 21 277-297 60-80 (163)
150 PRK11712 ribonuclease G; Provi 27.1 32 0.00069 36.0 1.3 14 130-143 403-416 (489)
151 PF07754 DUF1610: Domain of un 27.0 47 0.001 20.0 1.5 7 130-136 17-23 (24)
152 KOG1705 Uncharacterized conser 26.3 17 0.00038 29.0 -0.6 54 83-150 17-76 (110)
153 PF14803 Nudix_N_2: Nudix N-te 25.6 47 0.001 21.6 1.5 27 106-136 3-29 (34)
154 PF12387 Peptidase_C74: Pestiv 25.6 35 0.00076 30.6 1.1 25 87-115 163-187 (200)
155 COG1198 PriA Primosomal protei 25.5 43 0.00093 36.8 2.0 40 86-138 444-484 (730)
156 smart00276 GLECT Galectin. Gal 25.2 1.1E+02 0.0024 25.4 4.1 42 240-281 3-49 (128)
157 PF10080 DUF2318: Predicted me 25.1 1.4E+02 0.0031 24.4 4.5 28 124-151 29-60 (102)
158 COG1241 MCM2 Predicted ATPase 25.0 9.5E+02 0.021 26.4 13.7 15 282-296 258-272 (682)
159 PF04216 FdhE: Protein involve 24.2 27 0.00058 33.7 0.2 9 130-138 212-220 (290)
160 COG2888 Predicted Zn-ribbon RN 24.1 49 0.0011 24.5 1.4 6 130-135 28-33 (61)
161 PF07240 Turandot: Stress-indu 23.9 92 0.002 24.7 3.1 27 283-311 28-54 (85)
162 COG5435 Uncharacterized conser 23.8 1.4E+02 0.0029 26.2 4.4 33 267-299 108-140 (147)
163 PRK03681 hypA hydrogenase nick 23.5 1.1E+02 0.0024 25.3 3.7 10 84-93 68-77 (114)
164 COG5216 Uncharacterized conser 23.2 84 0.0018 23.2 2.5 14 65-78 30-43 (67)
165 PRK13130 H/ACA RNA-protein com 23.2 63 0.0014 23.5 1.9 7 130-136 18-24 (56)
166 PRK00398 rpoP DNA-directed RNA 23.2 70 0.0015 21.8 2.1 7 130-136 22-28 (46)
167 TIGR00100 hypA hydrogenase nic 22.6 1.3E+02 0.0029 24.9 4.0 10 84-93 68-77 (115)
168 PRK14714 DNA polymerase II lar 22.0 51 0.0011 38.2 1.8 36 102-152 666-701 (1337)
169 PF09862 DUF2089: Protein of u 21.7 61 0.0013 27.1 1.8 13 283-295 34-46 (113)
170 PF14205 Cys_rich_KTR: Cystein 21.7 1.1E+02 0.0024 22.2 2.8 12 104-115 5-16 (55)
171 PRK04023 DNA polymerase II lar 21.2 46 0.00099 37.7 1.2 37 101-152 624-660 (1121)
172 cd02646 R3H_G-patch R3H domain 21.2 1.2E+02 0.0026 21.8 3.1 24 276-300 18-41 (58)
173 PF14354 Lar_restr_allev: Rest 21.1 1E+02 0.0022 22.0 2.7 32 104-137 4-37 (61)
174 TIGR00757 RNaseEG ribonuclease 21.1 44 0.00096 34.1 1.0 15 103-117 390-404 (414)
175 COG2260 Predicted Zn-ribbon RN 20.5 63 0.0014 23.8 1.4 10 162-171 28-37 (59)
176 COG3809 Uncharacterized protei 20.3 79 0.0017 24.7 2.0 6 105-110 3-8 (88)
177 PF08566 Pam17: Mitochondrial 20.3 99 0.0021 27.8 2.9 20 282-301 113-132 (173)
178 KOG0315 G-protein beta subunit 20.2 88 0.0019 30.0 2.7 31 214-244 18-50 (311)
179 PF09862 DUF2089: Protein of u 20.2 85 0.0019 26.2 2.3 19 132-150 1-19 (113)
180 PHA00626 hypothetical protein 20.0 84 0.0018 23.0 2.0 6 130-135 24-29 (59)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-80 Score=603.89 Aligned_cols=285 Identities=43% Similarity=0.826 Sum_probs=261.9
Q ss_pred CcccccccccCCCCCC--CCCCCCCChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhhhcCCe
Q 017925 1 MYDQYGEAGVKSTVGG--GSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAE 78 (363)
Q Consensus 1 ~YD~~G~~g~~~g~gg--~~~g~~~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~~~G~~ 78 (363)
+|||||++++++++.+ ++++|++++.|||++|||+ +.+ ++++++++++|.|+.+.|+|||+|||+|++
T Consensus 65 ~YD~fG~~~~~~gg~gg~g~~~fgg~~~DIF~~~FgG---g~~-------~~~~~~~~~rG~Dl~~~l~isleEa~~G~~ 134 (371)
T COG0484 65 AYDQFGHAGFKAGGFGGFGFGGFGGDFGDIFEDFFGG---GGG-------GRRRPNRPRRGADLRYNLEITLEEAVFGVK 134 (371)
T ss_pred HhhccCccccccCCcCCCCcCCCCCCHHHHHHHhhcC---CCc-------ccCCCCCcccCCceEEEEEeEhhhhccCce
Confidence 5999999999743322 2334444689999999972 111 123344578999999999999999999999
Q ss_pred EEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCcEEeec
Q 017925 79 KEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLK 158 (363)
Q Consensus 79 ~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G~v~~~ 158 (363)
++|.+++.+.|++|+|+|+++++.+.+|++|+|+|++.+.+++ |.|+++++|++|+|+|++|+++|.+|+|.|++++.
T Consensus 135 ~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~--g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~ 212 (371)
T COG0484 135 KEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT--GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKK 212 (371)
T ss_pred eeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee--eEEEEEEECCCCccceeECCCCCCCCCCCCeEeee
Confidence 9999999999999999999999999999999999999888888 89999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEeccCceE
Q 017925 159 KNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS 238 (363)
Q Consensus 159 ~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tldG~~ 238 (363)
++|+|+||||+++|++|+++|+|+++++++++|||||+|+|++|+.|+|+|+|||++++|++++|+||++++||||||.+
T Consensus 213 ~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~ 292 (371)
T COG0484 213 KSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRV 292 (371)
T ss_pred eEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 017925 239 ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 298 (363)
Q Consensus 239 ~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~~ 298 (363)
+|+||||||+|++++|+|+|||++++. .+|||||+|+|++|++|+.+|++||++|++..
T Consensus 293 ~l~ip~Gtq~G~~~rl~gkG~p~~~~~-~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~ 351 (371)
T COG0484 293 KLKIPAGTQTGEVFRLRGKGMPKLRSG-GRGDLYVRVKVETPKNLSDEQKELLEEFAKSL 351 (371)
T ss_pred EEecCCCCccCcEEEEcCCCccccCCC-CcCCEEEEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999998764 67999999999999999999999999999866
No 2
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.9e-67 Score=518.87 Aligned_cols=285 Identities=31% Similarity=0.610 Sum_probs=249.1
Q ss_pred CcccccccccCCCC--CCCCCCC----------C-CChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEE
Q 017925 1 MYDQYGEAGVKSTV--GGGSSAY----------T-TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIV 67 (363)
Q Consensus 1 ~YD~~G~~g~~~g~--gg~~~g~----------~-~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ 67 (363)
+||+||+++++++. ++++++| + .++.|+|++|||+ +. + +.+++++++|+++.|.
T Consensus 64 ~YD~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~d~f~~~fgg---g~-~---------~~~~~~~g~di~~~l~ 130 (372)
T PRK14296 64 QYDQFGHAAFDGSSGFSSNFGDFEDLFSNMGSSGFSSFTNIFSDFFGS---NK-S---------DYQRSTKGQSVSLDIY 130 (372)
T ss_pred hhhhccchhhcCCCCcCcCCCccccccccccccccccchhhhhhhcCC---Cc-c---------CCCCcCCCCCeEEEee
Confidence 59999998876421 1111111 0 1344677777752 10 0 1122457899999999
Q ss_pred eehhhhhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeee
Q 017925 68 LEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR 147 (363)
Q Consensus 68 ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~ 147 (363)
|||+|+|+|++++|.+.+.+.|..|+|+|++.+....+|+.|+|+|.++..+++++.+++++++|+.|+|+|+++.++|+
T Consensus 131 ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~ 210 (372)
T PRK14296 131 LTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCK 210 (372)
T ss_pred ccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeeccccc
Confidence 99999999999999999999999999999999988999999999999988888776556666899999999999999999
Q ss_pred ecCCCcEEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccC-CcceeEEEEeceEEeecC
Q 017925 148 KCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRD-GIDLFSTISISYLDAIMG 226 (363)
Q Consensus 148 ~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~-G~DL~~~~~I~l~eAllG 226 (363)
.|+|.|++++.++++|+||||+++|++|+|+|+|++.+.++.+|||||+|++++|+.|+|+ |+|||++++|+|.|||||
T Consensus 211 ~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG 290 (372)
T PRK14296 211 NCKGKGKYLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILG 290 (372)
T ss_pred CCCCceEEEEEEEEEEEECCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCC
Confidence 9999999999999999999999999999999999998777889999999999999999995 899999999999999999
Q ss_pred cEEEEeccCceEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 017925 227 TVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 298 (363)
Q Consensus 227 ~~~~v~tldG~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~~ 298 (363)
++++|+||||+++|+||++||||++++|+|+|||...+++.+|||||+|+|+||+.|+++|+++|++|++.+
T Consensus 291 ~~~~i~tldG~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~~~ 362 (372)
T PRK14296 291 NEIIIKTLDGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQT 362 (372)
T ss_pred CEEEeeCCCCCEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999999998999999999999999999999965444568999999999999999999999999999764
No 3
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-66 Score=517.71 Aligned_cols=285 Identities=40% Similarity=0.761 Sum_probs=254.5
Q ss_pred CcccccccccCCCCCC---CCCCCC-----CChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhh
Q 017925 1 MYDQYGEAGVKSTVGG---GSSAYT-----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSE 72 (363)
Q Consensus 1 ~YD~~G~~g~~~g~gg---~~~g~~-----~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee 72 (363)
+||+||+++++++.++ ++++|. .++.|||++|||++ + + .+...++++++|+.+.|.|||+|
T Consensus 64 ~YD~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fgg~--~--~-------~~~~~~~~~g~di~~~l~vtLee 132 (380)
T PRK14276 64 AYDQYGAAGANGGFGGGAGGFGGFDGSGGFGGFEDIFSSFFGGG--G--A-------RRNPNAPRQGDDLQYRVNLDFEE 132 (380)
T ss_pred hHhhcCCccccCCCCCCCCCCCCccccccccchhhHHHHHhCcc--c--c-------ccCcCCCCCCCCEEEEEEEEHHH
Confidence 5999999988643211 111221 24568999999731 1 0 00112245789999999999999
Q ss_pred hhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCC
Q 017925 73 SIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 152 (363)
Q Consensus 73 ~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~ 152 (363)
+|+|++++|.+.+.+.|+.|+|+|++.+....+|+.|+|+|.++..+++++|+++++++|+.|+|+|+++.++|..|+|.
T Consensus 133 ~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 212 (380)
T PRK14276 133 AIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGT 212 (380)
T ss_pred hcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCc
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred cEEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEe
Q 017925 153 GRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVK 232 (363)
Q Consensus 153 G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~ 232 (363)
|++.+.++++|+||+|+.+|++|+|+|+|++.+.+.++|||||+|+|++|+.|+|+|+|||++++|+|.+||+|++++|+
T Consensus 213 g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~ 292 (380)
T PRK14276 213 GHEKQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVP 292 (380)
T ss_pred eEEEEEEEEEEEeCCCccCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEE
Confidence 99999999999999999999999999999998777788999999999999999999999999999999999999999999
Q ss_pred ccCceEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhh
Q 017925 233 TVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 297 (363)
Q Consensus 233 tldG~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~ 297 (363)
|+||++.|+||+++++|++++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|++.
T Consensus 293 tldg~i~v~ip~g~~~g~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~~ 356 (380)
T PRK14276 293 TVHGDVELKIPAGTQTGKKFRLRGKGAPKLRG-GGNGDQHVTVNIVTPTKLNDAQKEALKAFAKA 356 (380)
T ss_pred cCCCcEEEEECCCCCCCCEEEECCCCcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99999899999999999999999999998654 35799999999999999999999999999864
No 4
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-66 Score=515.45 Aligned_cols=286 Identities=38% Similarity=0.716 Sum_probs=252.4
Q ss_pred CcccccccccCCCC-CCCCC-CCCCChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhhhcCCe
Q 017925 1 MYDQYGEAGVKSTV-GGGSS-AYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAE 78 (363)
Q Consensus 1 ~YD~~G~~g~~~g~-gg~~~-g~~~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~~~G~~ 78 (363)
+||+||+++..+++ +++++ +| .++.|+|++|||++ + ++ ++...++++++|+.+.|+|||+|+|+|++
T Consensus 63 ~YD~~G~~~~~~~~~~~g~~~~f-~~~~d~f~~ffgg~--g-~~-------~~~~~~~~~g~d~~~~l~vtLee~~~G~~ 131 (378)
T PRK14278 63 IVDLGGDPLESAGGGGGGFGGGF-GGLGDVFEAFFGGG--A-AS-------RGPRGRVRPGSDSLLRMRLDLEECATGVT 131 (378)
T ss_pred hhhccCCccccccCCCCCCCcCc-CchhHHHHHHhCCC--C-CC-------CCCccCCCCCCCeEEEEEEEHHHhcCCeE
Confidence 59999987443211 11111 22 24568999999731 1 00 01111345799999999999999999999
Q ss_pred EEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCcEEeec
Q 017925 79 KEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLK 158 (363)
Q Consensus 79 ~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G~v~~~ 158 (363)
++|.+++.+.|+.|+|+|++.+....+|+.|+|+|+++..+++++|+++++++|+.|+|+|+++.++|+.|+|.|++.+.
T Consensus 132 ~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 211 (378)
T PRK14278 132 KQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRAR 211 (378)
T ss_pred EEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecc
Confidence 99999999999999999999998899999999999999988999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEecc-Cce
Q 017925 159 KNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTV-EGI 237 (363)
Q Consensus 159 ~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tl-dG~ 237 (363)
++++|+||||+.+|++|+|+|+|++.+.+.++|||||+|++++|+.|+|+|+||+++++|+|.+||+|++++|+|| ++.
T Consensus 212 ~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~ 291 (378)
T PRK14278 212 REITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGP 291 (378)
T ss_pred eEEEEEECCCCCCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCe
Confidence 9999999999999999999999999887788999999999999999999999999999999999999999999999 555
Q ss_pred EEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 017925 238 SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 298 (363)
Q Consensus 238 ~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~~ 298 (363)
+.|+||+++++|++++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+.+.
T Consensus 292 i~v~ip~g~~~g~~lrl~g~G~p~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~~~~ 351 (378)
T PRK14278 292 SEITIPPGTQPGSVITLRGRGMPHLRS-GGRGDLHAHVEVVVPTRLDHEDIELLRELKALR 351 (378)
T ss_pred EEEEeCCCcCCCcEEEECCCCCCCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Confidence 799999999999999999999997654 368999999999999999999999999999754
No 5
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-66 Score=517.06 Aligned_cols=288 Identities=41% Similarity=0.815 Sum_probs=255.6
Q ss_pred CcccccccccCCCCC---CCCCCCC----CChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhh
Q 017925 1 MYDQYGEAGVKSTVG---GGSSAYT----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSES 73 (363)
Q Consensus 1 ~YD~~G~~g~~~g~g---g~~~g~~----~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~ 73 (363)
+||+||+++++.+++ +++++|. .++.|||++|||++++ +. ++ +..++++|+|+++.|+|||+|+
T Consensus 65 ~yD~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fgg~~g---~~-----~~-~~~~~~kg~di~~~l~vsLee~ 135 (380)
T PRK14297 65 QYDQFGTADFNGAGGFGSGGFGGFDFSDMGGFGDIFDSFFGGGFG---SS-----SR-RRNGPQRGADIEYTINLTFEEA 135 (380)
T ss_pred chhhcCcccccccCCCCCCCCCCcCcccccchhHHHHHHhccCcc---cc-----cc-ccCCCCCCCCEEEEEEEEHHHh
Confidence 599999998864211 1112221 1456899999974211 10 01 1122457999999999999999
Q ss_pred hcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCc
Q 017925 74 IFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEG 153 (363)
Q Consensus 74 ~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G 153 (363)
|+|++++|.+.+.+.|..|+|+|.+++....+|+.|+|+|+++..+++++|+++++++|+.|+|+|.++.++|..|+|.|
T Consensus 136 ~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 215 (380)
T PRK14297 136 VFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKG 215 (380)
T ss_pred cCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCe
Confidence 99999999999999999999999999988999999999999999899999999999999999999999999999999999
Q ss_pred EEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEec
Q 017925 154 RIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKT 233 (363)
Q Consensus 154 ~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~t 233 (363)
++++.++++|+||||+.+|++|+|+|+|++.+.+.++|||||+|+|++|+.|+|+|+||+++++|+|.+||+|++++|+|
T Consensus 216 ~v~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ 295 (380)
T PRK14297 216 KVRKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPT 295 (380)
T ss_pred EEEeEeEEEEEeCCCCCCCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEc
Confidence 99999999999999999999999999999987777899999999999999999999999999999999999999999999
Q ss_pred cCceEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 017925 234 VEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 298 (363)
Q Consensus 234 ldG~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~~ 298 (363)
|||++.|+||+++++|++++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|+...
T Consensus 296 ldg~~~v~ip~g~~~g~~~ri~g~G~p~~~~-~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~ 359 (380)
T PRK14297 296 VDGEVKYEVPAGTQPGTVFRLKGKGVPRVNS-TGRGNQYVTVIVDIPKKLNSKQKEALTMFMEAS 359 (380)
T ss_pred CCCcEEEEECCCcCCCCEEEEcCCCcCCCCC-CCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 9999899999999999999999999997653 368999999999999999999999999999754
No 6
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-66 Score=515.95 Aligned_cols=285 Identities=40% Similarity=0.766 Sum_probs=254.6
Q ss_pred CcccccccccCCCCCC--CC--CCCCCChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhhhcC
Q 017925 1 MYDQYGEAGVKSTVGG--GS--SAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFG 76 (363)
Q Consensus 1 ~YD~~G~~g~~~g~gg--~~--~g~~~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~~~G 76 (363)
+||+||+++++++.++ ++ ++| .++.|+|++|||++ + + + ++.++++++|+++.|+|||+|+|+|
T Consensus 65 ~YD~~G~~g~~~~~~~~~~~~~~~~-~~~~d~f~~~Fgg~--~--~-------~-~~~~~~~g~di~~~l~vslee~~~G 131 (377)
T PRK14298 65 QYDRFGHAGIDNQYSAEDIFRGADF-GGFGDIFEMFFGGG--G--R-------R-GRMGPRRGSDLRYDLYITLEEAAFG 131 (377)
T ss_pred hhhhcCccccccccCcccccccCCc-CcchhhhHhhhcCC--C--c-------c-CCCCCCCCCCEEEEEEEEHHHhhCC
Confidence 5999999888643211 11 122 24568999999731 1 0 0 0122457999999999999999999
Q ss_pred CeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCcEEe
Q 017925 77 AEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIR 156 (363)
Q Consensus 77 ~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G~v~ 156 (363)
++++|.+.+.+.|+.|+|+|++.+....+|+.|+|+|+++..+++++|+++++++|+.|+|+|+++.++|..|+|.|++.
T Consensus 132 ~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 211 (377)
T PRK14298 132 VRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVR 211 (377)
T ss_pred eEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEE
Confidence 99999999999999999999999998999999999999998888888999888999999999999999999999999999
Q ss_pred eceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEeccCc
Q 017925 157 LKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG 236 (363)
Q Consensus 157 ~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tldG 236 (363)
+.++++|+||||+++|++|+|+|+|++.+.++++|||||+|++++|+.|+|+|+|||++++|+|.+||+|+++.|+||||
T Consensus 212 ~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG 291 (377)
T PRK14298 212 KTRKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYG 291 (377)
T ss_pred EEEEEEecCCCCCCCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCC
Confidence 99999999999999999999999999987788999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhhcC
Q 017925 237 ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN 299 (363)
Q Consensus 237 ~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~~~ 299 (363)
++.|+||+++++|++++|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|+++++
T Consensus 292 ~i~v~ip~g~~~g~~lri~g~G~p~~~~-~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~~~~~ 353 (377)
T PRK14298 292 KVKMNIPPGTQTHSVFRLKDKGMPRLHG-HGKGDQLVKVIVKTPTKLTQEQKELLREFDELSN 353 (377)
T ss_pred CEEEEeCCCcccCCEEEECCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence 9899999999999999999999997654 3689999999999999999999999999997543
No 7
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-66 Score=515.09 Aligned_cols=286 Identities=40% Similarity=0.804 Sum_probs=254.9
Q ss_pred CcccccccccCCCCCC-CCC--CCC--CChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhhhc
Q 017925 1 MYDQYGEAGVKSTVGG-GSS--AYT--TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIF 75 (363)
Q Consensus 1 ~YD~~G~~g~~~g~gg-~~~--g~~--~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~~~ 75 (363)
+||+||+++++++.++ +++ +|. +++.|+|++|||++ + . ++..+++++++|+.+.|.|||+|+|+
T Consensus 64 ~yD~~G~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fgg~--~--~-------~~~~~~~~kg~di~~~l~vtLee~~~ 132 (376)
T PRK14280 64 QYDQFGHAGPNQGFGGGGFGGGDFGGGFGFEDIFSSFFGGG--G--R-------RRDPNAPRQGADLQYTMTLTFEEAVF 132 (376)
T ss_pred HHHhcCccccccCcCCCCCCCCCccccccchhhHHHHhCCc--c--c-------cCcccccccccCEEEEEEEEHHHHhC
Confidence 5999999988643211 111 121 25678999999731 1 0 00112245799999999999999999
Q ss_pred CCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCcEE
Q 017925 76 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 155 (363)
Q Consensus 76 G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G~v 155 (363)
|++++|.+.+.+.|+.|+|+|++.+....+|+.|+|+|+++..+++++|+++++++|+.|+|+|+++.++|+.|+|.|++
T Consensus 133 G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 212 (376)
T PRK14280 133 GKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKV 212 (376)
T ss_pred CceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEE
Confidence 99999999999999999999999988889999999999999889999999999999999999999999999999999999
Q ss_pred eeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEeccC
Q 017925 156 RLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVE 235 (363)
Q Consensus 156 ~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tld 235 (363)
.+.++++|.||+|+.+|++|+|+|+|++.+.+.++|||||+|+|++|+.|+|+|+|||+++.|+|.|||+|+++.|+|||
T Consensus 213 ~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 292 (376)
T PRK14280 213 RKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLH 292 (376)
T ss_pred EEEEEEEEEeCCCCcCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCC
Confidence 99999999999999999999999999998777889999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 017925 236 GISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 298 (363)
Q Consensus 236 G~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~~ 298 (363)
|++.|+||+++++|++++|+|+|||..+. ..+|||||+|+|.+|+.||++|+++|++|+++.
T Consensus 293 g~i~v~ip~g~~~g~~~~i~g~G~p~~~~-~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~~~ 354 (376)
T PRK14280 293 GKVKLKIPAGTQTGTQFRLKGKGVPNVRG-YGQGDQYVVVRVVTPTKLTDRQKELLREFAELS 354 (376)
T ss_pred ceEEEEECCCCCCCcEEEEcCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 99899999999999999999999997654 368999999999999999999999999998654
No 8
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.4e-66 Score=513.96 Aligned_cols=285 Identities=40% Similarity=0.816 Sum_probs=255.0
Q ss_pred CcccccccccCCCCCC-CCCCCCCChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhhhcCCeE
Q 017925 1 MYDQYGEAGVKSTVGG-GSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEK 79 (363)
Q Consensus 1 ~YD~~G~~g~~~g~gg-~~~g~~~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~~~G~~~ 79 (363)
+||+||+++++++.++ ++++|+ ++.|+|++|||++ + + .+..+++++|+|+.+.|+|||+|+|+|+++
T Consensus 64 ~YD~~G~~~~~~~~~~~~~~~f~-~~~d~f~~~fgg~--~--~-------~~~~~~~~~g~d~~~~l~vslee~~~G~~~ 131 (371)
T PRK14287 64 HYDQFGHTDPNQGFGGGGAGDFG-GFSDIFDMFFGGG--G--G-------RRNPNAPRQGADLQYTMTLEFKEAVFGKET 131 (371)
T ss_pred HHHhhCCcccccccCCCCCcccc-chHHHHHhhhccc--c--C-------CCCCCCCCCCCCEEEEEEEEHHHhcCCeEE
Confidence 5999999987643211 112232 4569999999731 1 0 001112357999999999999999999999
Q ss_pred EEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCcEEeece
Q 017925 80 EFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKK 159 (363)
Q Consensus 80 ~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G~v~~~~ 159 (363)
+|.+.+.+.|+.|+|+|++.+..+.+|+.|+|+|+++..+++++|+++++++|+.|.|+|+++.++|..|.|.+++.+.+
T Consensus 132 ~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~ 211 (371)
T PRK14287 132 EIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRK 211 (371)
T ss_pred EEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeE
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEeccCceEE
Q 017925 160 NIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISE 239 (363)
Q Consensus 160 ~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tldG~~~ 239 (363)
+|+|.||||+.+|++|+|+|+|++.+.++.+|||||+|++++|+.|+|+|+|||+++.|+|.+||+|++++|+|+||++.
T Consensus 212 ~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~ 291 (371)
T PRK14287 212 KINVKVPAGIDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVK 291 (371)
T ss_pred EEEEEECCcCCCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEE
Confidence 99999999999999999999999987777899999999999999999999999999999999999999999999999989
Q ss_pred EecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 017925 240 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 298 (363)
Q Consensus 240 l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~~ 298 (363)
|+||+++++|++++|+|+|||..+.. .+|||||+|+|.+|+.|+.+|+++|++|+++.
T Consensus 292 v~ip~g~~~g~~~ri~g~G~p~~~~~-~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~ 349 (371)
T PRK14287 292 LKIPAGTQTGTSFRLRGKGVPNVHGR-GQGDQHVQVRVVTPKNLTEKEKELMREFAGMS 349 (371)
T ss_pred EEECCCccCCcEEEEcCCCccCCCCC-CCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 99999999999999999999976543 58999999999999999999999999999653
No 9
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3e-66 Score=515.94 Aligned_cols=289 Identities=39% Similarity=0.799 Sum_probs=254.8
Q ss_pred CcccccccccCCCC-C-CCC--CC-----CC---CChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEe
Q 017925 1 MYDQYGEAGVKSTV-G-GGS--SA-----YT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVL 68 (363)
Q Consensus 1 ~YD~~G~~g~~~g~-g-g~~--~g-----~~---~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~l 68 (363)
+||+||+++++.+. + +++ ++ +. .++.|+|++||++.||+.+ .++..++++++|+++.|+|
T Consensus 66 ~yD~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~~--------~~~~~~~~kg~di~~~l~v 137 (386)
T PRK14277 66 QYDQFGHAAFDPGGFGQGGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGR--------RRAETGPQKGADIRYDLEL 137 (386)
T ss_pred HHHhhccccccccccccCCcCCCCccccCccccccchhHHHHHhhcccccCCC--------cCCCCCCCCCCCEEEEEEE
Confidence 59999998876321 1 100 11 11 2345889999975332210 1111224579999999999
Q ss_pred ehhhhhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeee
Q 017925 69 EFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRK 148 (363)
Q Consensus 69 tlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~ 148 (363)
||+|+|+|++++|.+++.+.|+.|+|+|...+....+|+.|+|+|+++..+++++|+++++++|+.|+|+|+++.++|..
T Consensus 138 tLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~ 217 (386)
T PRK14277 138 TFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNK 217 (386)
T ss_pred EHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCC
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcE
Q 017925 149 CSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTV 228 (363)
Q Consensus 149 C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~ 228 (363)
|+|.|++++.++++|+||+|+++|++|+|+|+|++.+.+..+|||||+|+|++|+.|+|+|+|||++++|+|.|||||++
T Consensus 218 C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~ 297 (386)
T PRK14277 218 CGGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGE 297 (386)
T ss_pred CCCCcEEeeeeEEEEecCCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCE
Confidence 99999999999999999999999999999999999776778999999999999999999999999999999999999999
Q ss_pred EEEeccCceEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 017925 229 VKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 298 (363)
Q Consensus 229 ~~v~tldG~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~~ 298 (363)
+.|+||||++.|+||+++++|++++|+|+|||..+.+ .+|||||+|+|.||+.|+++|+++|++|+++.
T Consensus 298 ~~i~tldG~~~v~ip~g~~~g~~~ri~g~G~p~~~~~-~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~~~ 366 (386)
T PRK14277 298 IEIPTLDGKVKFTIPEGTQTGTKFRLRGKGIPHLRGR-GRGDQIVKVYIEVPKKLTEKQKELLREFEKLS 366 (386)
T ss_pred EEEEcCCCCEEEEECCCCCCCCEEEECCCCCCCCCCC-CCCCEEEEEEEEeCCCCCHHHHHHHHHHHhhc
Confidence 9999999998999999999999999999999976543 68999999999999999999999999998654
No 10
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.7e-65 Score=510.62 Aligned_cols=239 Identities=39% Similarity=0.754 Sum_probs=229.5
Q ss_pred CCCCcEEEEEEeehhhhhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCC
Q 017925 57 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 136 (363)
Q Consensus 57 ~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 136 (363)
.+++|+++.|+|||||+|+|++++|.+.+.+.|+.|+|+|++.+ ...+|+.|+|+|++...+++++|+++++++|+.|.
T Consensus 134 ~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 212 (397)
T PRK14281 134 IPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCG 212 (397)
T ss_pred CCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCc
Confidence 57999999999999999999999999999999999999999987 57899999999999999999999999999999999
Q ss_pred cccEEeceeeeecCCCcEEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEE
Q 017925 137 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 216 (363)
Q Consensus 137 G~G~vi~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~ 216 (363)
|+|+++.++|+.|+|.|+++..++++|+||||+++|++|+|+|+|++.+.++++|||||+|++++|+.|+|+|+|||+++
T Consensus 213 G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~ 292 (397)
T PRK14281 213 GEGRVVKDRCPACYGEGIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNL 292 (397)
T ss_pred ceeeeeCCCCCCCCCCccEecceEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEE
Confidence 99999999999999999999999999999999999999999999999887788999999999999999999999999999
Q ss_pred EeceEEeecCcEEEEeccCceEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHh
Q 017925 217 SISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELAS 296 (363)
Q Consensus 217 ~I~l~eAllG~~~~v~tldG~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~ 296 (363)
+|+|.+||+|++++|+||||++.|+||+++++|++++|+|+|||..+. ..+|||||+|+|.||+.||++|+++|++|++
T Consensus 293 ~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G~~~ri~g~G~P~~~~-~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~ 371 (397)
T PRK14281 293 AVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPETMLRIPGKGIGHLRG-SGRGDQYVRVNVFVPKEVSHQDKELLKELKK 371 (397)
T ss_pred EecHHHHhcCCeEEeecCCccEEEEeCCccCCCcEEEEcCCCCCCCCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999899999999999999999999997654 3689999999999999999999999999986
Q ss_pred h
Q 017925 297 L 297 (363)
Q Consensus 297 ~ 297 (363)
.
T Consensus 372 ~ 372 (397)
T PRK14281 372 S 372 (397)
T ss_pred h
Confidence 4
No 11
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-65 Score=510.50 Aligned_cols=238 Identities=39% Similarity=0.793 Sum_probs=225.4
Q ss_pred CCCCCcEEEEEEeehhhhhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCC
Q 017925 56 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSC 135 (363)
Q Consensus 56 ~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 135 (363)
+++++|+.+.|.|||||+|+|++++|++++.+.|++|+|+|++++....+|+.|+|+|.++..+ |+++++++|+.|
T Consensus 128 ~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C 203 (391)
T PRK14284 128 ARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFSMASTCPEC 203 (391)
T ss_pred cCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe----ceEEEEEECCCC
Confidence 4578999999999999999999999999999999999999999999899999999999877543 788888999999
Q ss_pred CcccEEeceeeeecCCCcEEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEE
Q 017925 136 GGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 215 (363)
Q Consensus 136 ~G~G~vi~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~ 215 (363)
+|+|+++.++|..|+|.|++++.++|+|+||||+.+|++|+|+|+|++++.++++|||||+|++++|+.|+|+|+|||++
T Consensus 204 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~ 283 (391)
T PRK14284 204 GGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILE 283 (391)
T ss_pred CCCCcccCCcCCCCCCcceecceEEEEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEE
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred EEeceEEeecCcEEEEeccC--ceEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHH
Q 017925 216 ISISYLDAIMGTVVKVKTVE--GISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEE 293 (363)
Q Consensus 216 ~~I~l~eAllG~~~~v~tld--G~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~ 293 (363)
++|+|.+||+|++++|+||| +.++|+||+++++|++++|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++
T Consensus 284 ~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 362 (391)
T PRK14284 284 LPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGTILKVRGQGFPNVHG-KGRGDLLVRISVETPQNLSEEQKELLRQ 362 (391)
T ss_pred EEecHHHHhCCCeEEEeecCCCcEEEEEECCccCCCeEEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999 55789999999999999999999997654 3689999999999999999999999999
Q ss_pred HHhhc
Q 017925 294 LASLR 298 (363)
Q Consensus 294 l~~~~ 298 (363)
|+++.
T Consensus 363 l~~~~ 367 (391)
T PRK14284 363 FAATE 367 (391)
T ss_pred HHhhc
Confidence 98653
No 12
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.2e-65 Score=504.60 Aligned_cols=287 Identities=42% Similarity=0.817 Sum_probs=249.9
Q ss_pred CcccccccccCCCCCC-C---CCCCC---CChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhh
Q 017925 1 MYDQYGEAGVKSTVGG-G---SSAYT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSES 73 (363)
Q Consensus 1 ~YD~~G~~g~~~g~gg-~---~~g~~---~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~ 73 (363)
+||+||+++++.+.++ + +++|. .++.|||++|||++++++ . . .+++.++++++|+++.|+|||+|+
T Consensus 65 ~YD~~G~~g~~~~~~~~~~~~~~~~~~~~~~~~d~f~~ffgg~~~~~---~--~--~~~~~~~~~g~di~~~l~vtLee~ 137 (372)
T PRK14286 65 AYDQFGKAGVNAGAGGFGQGAYTDFSDIFGDFGDIFGDFFGGGRGGG---S--G--GGRRSGPQRGSDLRYNLEVSLEDA 137 (372)
T ss_pred HHHHhCchhhccccCCCCCCCcccccccccchhhHHHHhhCCCccCC---C--c--ccccCCCCCCCCeeEEEEEEHHHH
Confidence 5999999987643211 1 11121 245689999997421110 0 0 011123457999999999999999
Q ss_pred hcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCc
Q 017925 74 IFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEG 153 (363)
Q Consensus 74 ~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G 153 (363)
|+|++++|.+++.+.|++|+|+|++.+....+|+.|+|+|+++..+ |+++++++|+.|+|+|+++.++|..|+|.|
T Consensus 138 ~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 213 (372)
T PRK14286 138 ALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ----GFFSVATTCPTCRGKGTVISNPCKTCGGQG 213 (372)
T ss_pred hCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEe----ceEEEEEeCCCCCceeeEecccCCCCCCCc
Confidence 9999999999999999999999999988889999999999876643 788888999999999999999999999999
Q ss_pred EEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEec
Q 017925 154 RIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKT 233 (363)
Q Consensus 154 ~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~t 233 (363)
++++.++++|+||||+++|++|+|+|+|++.+.+.++|||||+|+|++|+.|+|+|+||+++++|+|.+||+|+++.|+|
T Consensus 214 ~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~t 293 (372)
T PRK14286 214 LQEKRRTINIKIPPGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPT 293 (372)
T ss_pred EEecceEEEEEECCCCCCCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeC
Confidence 99999999999999999999999999999988777889999999999999999999999999999999999999999999
Q ss_pred cCce-EEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhhcC
Q 017925 234 VEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN 299 (363)
Q Consensus 234 ldG~-~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~~~ 299 (363)
|||+ +.|+||+++++|++++|+|+|||..+.+ .+|||||+|+|.||+.|+++|+++|++|++.++
T Consensus 294 ldG~~i~v~ip~g~~~g~~~ri~G~G~P~~~~~-~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~~~ 359 (372)
T PRK14286 294 IDGKKAKMKIPEGTESGQVFRLKGHGMPYLGAY-GKGDQHVIVKIEIPKKITRRQRELIEEFARESG 359 (372)
T ss_pred CCCCEEEEEeCCccCCCcEEEECCCCCCCCCCC-CCCcEEEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 9997 7899999999999999999999976543 689999999999999999999999999998654
No 13
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.5e-65 Score=502.63 Aligned_cols=282 Identities=28% Similarity=0.562 Sum_probs=241.0
Q ss_pred CcccccccccCCCCCCCCCCCCCChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhhhcCCeEE
Q 017925 1 MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKE 80 (363)
Q Consensus 1 ~YD~~G~~g~~~g~gg~~~g~~~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~~~G~~~~ 80 (363)
+||+||+++++++++ +.++| .++|+.|++||+..||++ +. ++.+.++++++|+.+.|+|||+|+|+|++++
T Consensus 64 ~YD~~G~~~~~~~~~-~~~~~-~~~f~~~~~~F~~~fg~g-~~------~~~~~~~~~g~di~~~l~vslee~~~G~~~~ 134 (369)
T PRK14288 64 LYDRYGKKGLNQAGA-SQSDF-SDFFEDLGSFFEDAFGFG-AR------GSKRQKSSIAPDYLQTIELSFKEAVFGCKKT 134 (369)
T ss_pred HHHHhcccccccCCC-Ccccc-ccchhhHHHHHHhhcCCC-Cc------ccCcCCCCCCCCeeEeccccHHHHhCCeEEE
Confidence 599999988764211 11123 133444444554322211 10 0111234578999999999999999999999
Q ss_pred EEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCcEEeeceE
Q 017925 81 FELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKN 160 (363)
Q Consensus 81 i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G~v~~~~~ 160 (363)
|.+.+.+.|+.|+|+|++.+ ...+|+.|+|+|.+...+ |+++++++|+.|.|+|+++.++|..|+|.|++++.++
T Consensus 135 i~~~r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~ 209 (369)
T PRK14288 135 IKVQYQSVCESCDGTGAKDK-ALETCKQCNGQGQVFMRQ----GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEE 209 (369)
T ss_pred EEEEeeccCCCCCCcccCCC-CCcCCCCCCCCcEEEEEe----ceEEEEEecCCCCCCceEccccCccCCCcceEEEEEE
Confidence 99999999999999999886 578999999999876543 7778889999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEeccCce-EE
Q 017925 161 IKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SE 239 (363)
Q Consensus 161 l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tldG~-~~ 239 (363)
|+|+||||+++|++|+|+|+|++.+ ++.+|||||+|+|++|+.|+|+|+|||++++|+|.|||||+++.|+||||+ ++
T Consensus 210 l~V~IP~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~ 288 (369)
T PRK14288 210 IDAIIPEGIDDQNRMVLKNKGNEYE-KGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELE 288 (369)
T ss_pred EEEecCCCCCCCCEEEEccCccCCC-CCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEE
Confidence 9999999999999999999999976 578999999999999999999999999999999999999999999999997 79
Q ss_pred EecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 017925 240 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 298 (363)
Q Consensus 240 l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~~ 298 (363)
|+||++++||++++|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|++.+
T Consensus 289 i~i~~~~~~g~~~~i~g~G~p~~~~-~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~ 346 (369)
T PRK14288 289 LKIPRNARDRQTFAFRNEGVKHPES-SYRGSLIVELQVIYPKSLNKEQQELLEKLHASF 346 (369)
T ss_pred EEeCCCCCCCcEEEEcCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999997653 358999999999999999999999999999753
No 14
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.7e-64 Score=494.76 Aligned_cols=285 Identities=27% Similarity=0.625 Sum_probs=250.3
Q ss_pred CcccccccccCCCCCC-CC-CCC---C---CChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhh
Q 017925 1 MYDQYGEAGVKSTVGG-GS-SAY---T---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSE 72 (363)
Q Consensus 1 ~YD~~G~~g~~~g~gg-~~-~g~---~---~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee 72 (363)
+||+||+++++++++. ++ ++| + .++.|||++|||++. +. .+..++++|+|++++|.|||+|
T Consensus 64 ~yd~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~f~~~fgg~~---~~--------~~~~~~~~g~di~~~l~vtlee 132 (365)
T PRK14285 64 QYDRFGHTAFEGGGGFEGFSGGFSGFSDIFEDFGDIFDSFFTGNR---GQ--------DKNRKHEKGQDLTYQIEISLED 132 (365)
T ss_pred HHHhcCcchhccCCCccccCCCccccccccccHHHHHHHhhcCCc---CC--------CCCcCCCCCCCEEEEEEEEHHH
Confidence 5999999988643210 11 121 1 245688999987311 00 0111235799999999999999
Q ss_pred hhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCC
Q 017925 73 SIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 152 (363)
Q Consensus 73 ~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~ 152 (363)
+|+|++++|++++.+.|..|+|+|++.+..+.+|+.|+|+|+++. .+|+++++++|+.|.|+|+++.++|..|+|.
T Consensus 133 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~----~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 208 (365)
T PRK14285 133 AYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQ----GGGFFRVTTTCPKCYGNGKIISNPCKSCKGK 208 (365)
T ss_pred hhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEe----cCceeEEeeecCCCCCcccccCCCCCCCCCC
Confidence 999999999999999999999999999988999999999998764 3588888899999999999999999999999
Q ss_pred cEEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEe
Q 017925 153 GRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVK 232 (363)
Q Consensus 153 G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~ 232 (363)
|++++.++++|+||||+++|++|+|+|+|++.+++.++|||||+|++++|+.|+|+|+|||++++|+|.+||+|++++|+
T Consensus 209 g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~ 288 (365)
T PRK14285 209 GSLKKKETIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQ 288 (365)
T ss_pred CEEeccEEEEEEECCCCCCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEE
Confidence 99999999999999999999999999999998877789999999999999999999999999999999999999999999
Q ss_pred ccCce-EEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhhcCCC
Q 017925 233 TVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRNTT 301 (363)
Q Consensus 233 tldG~-~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~~~~~ 301 (363)
||||+ ++|+||+++++|++++|+|+|||..+.. .+|||||+|+|.+|+.|+++|+++|++|++...+.
T Consensus 289 tldG~~v~V~Ip~g~~~g~~irl~GkG~p~~~~~-~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~~~~ 357 (365)
T PRK14285 289 TIASKKIKIKIPKGTENDEQIIIKNEGMPILHTE-KFGNLILIIKIKTPKNLNSNAIKLLENLSKELKDI 357 (365)
T ss_pred CCCCCEEEEEeCCCcCCCcEEEECCCCccCCCCC-CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 99996 7899999999999999999999976543 57999999999999999999999999999888764
No 15
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=5.4e-64 Score=502.60 Aligned_cols=275 Identities=29% Similarity=0.583 Sum_probs=243.6
Q ss_pred CcccccccccCCCCCCCCCCCCCChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhhhcCCeEE
Q 017925 1 MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKE 80 (363)
Q Consensus 1 ~YD~~G~~g~~~g~gg~~~g~~~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~~~G~~~~ 80 (363)
+||+||++++.++. + +.+++|+|+.|||+ +. ++ .+.++|+|+.+.|.|||+|+|+|++++
T Consensus 85 ~YD~~G~~~~~~~~----~--~~d~~d~f~~~Fgg---g~---------~~--~~~~rg~di~~~l~vtLee~~~G~~~~ 144 (421)
T PTZ00037 85 IYDEYGEEGLEGGE----Q--PADASDLFDLIFGG---GR---------KP--GGKKRGEDIVSHLKVTLEQIYNGAMRK 144 (421)
T ss_pred HHhhhcchhcccCC----C--CcchhhhHHHhhcc---cc---------cc--ccccCCCCEEEEeeeeHHHHhCCCceE
Confidence 59999998876321 1 12568999999973 10 00 123578999999999999999999999
Q ss_pred EEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEec--eeeeecCCCcEEeec
Q 017925 81 FELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--EYCRKCSGEGRIRLK 158 (363)
Q Consensus 81 i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~--~~C~~C~G~G~v~~~ 158 (363)
|.+.+.+.|+.|+|+|.+.+ ...+|+.|+|+|+++..+++++-.++++++|+.|+|+|+++. ++|..|+|.|++++.
T Consensus 145 i~~~r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~ 223 (421)
T PTZ00037 145 LAINKDVICANCEGHGGPKD-AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTR 223 (421)
T ss_pred EEeeccccccccCCCCCCCC-CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeee
Confidence 99999999999999998655 578999999999988777765522344589999999999986 899999999999999
Q ss_pred eEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEeccCce-
Q 017925 159 KNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI- 237 (363)
Q Consensus 159 ~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tldG~- 237 (363)
++|+|+||||+.+|++|+|+|+|++.+ ++.||||||+|++++|+.|+|+|+|||++++|+|++||||+++.|+||||+
T Consensus 224 ~~l~V~Ip~G~~dG~~I~~~G~Gd~~~-~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~ 302 (421)
T PTZ00037 224 KILEVNIDKGVPNQHKITFHGEADEKP-NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRK 302 (421)
T ss_pred eEEEEeeCCCCCCCcEEEEecccCCCC-CCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCe
Confidence 999999999999999999999999976 578999999999999999999999999999999999999999999999997
Q ss_pred EEEecCCC--CCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcC--CCCCHHHHHHHHHHHhh
Q 017925 238 SELQVPPG--TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP--NRISAKERELLEELASL 297 (363)
Q Consensus 238 ~~l~ip~g--tq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P--~~l~~~q~~ll~~l~~~ 297 (363)
++|+|||| |+||++++|+|+|||..++++.+|||||+|+|.|| +.||++|+++|++|+..
T Consensus 303 l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~ 366 (421)
T PTZ00037 303 LLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQ 366 (421)
T ss_pred EEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccC
Confidence 78999998 99999999999999987655578999999999999 99999999999999864
No 16
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.6e-63 Score=490.92 Aligned_cols=285 Identities=36% Similarity=0.738 Sum_probs=247.2
Q ss_pred CcccccccccCCCC---C-CCCCCCCCChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhhhcC
Q 017925 1 MYDQYGEAGVKSTV---G-GGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFG 76 (363)
Q Consensus 1 ~YD~~G~~g~~~g~---g-g~~~g~~~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~~~G 76 (363)
+||+||++++..+. + +++++|..++.|+|++||+..||+. + .+.+...+++++|+.+.|.|||+|+|+|
T Consensus 63 ~yD~~G~~~~~~~~~~~~~g~~~~~~~~~~~~f~~~f~~~~gg~-~------~~~~~~~~~~g~di~~~l~~sLee~~~G 135 (372)
T PRK14300 63 AYDRFGHDAFQNQQSRGGGGNHGGFHPDINDIFGDFFSDFMGGS-R------RSRPTSSKVRGSDLKYNLTINLEEAFHG 135 (372)
T ss_pred HHHhccccccccccccCCCCCCCccccchhhhHHHHHHhhcCCC-C------CCCCCcCCCCCCCeeEEEEEEHHHHhCC
Confidence 59999998876321 1 1112332245678888887533221 0 0011112357899999999999999999
Q ss_pred CeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCcEEe
Q 017925 77 AEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIR 156 (363)
Q Consensus 77 ~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G~v~ 156 (363)
++++|.+.+.+.|+.|+|+|.+.+....+|+.|+|+|.++.. +|+++++.+|+.|+|+|+++.++|..|+|.|++.
T Consensus 136 ~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 211 (372)
T PRK14300 136 IEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQ----QGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYH 211 (372)
T ss_pred ceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEe----eceEEEEEeCCCCCccceEeCCCCCCCCCceEEE
Confidence 999999999999999999999998888999999999987653 3888888999999999999999999999999999
Q ss_pred eceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEeccCc
Q 017925 157 LKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEG 236 (363)
Q Consensus 157 ~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tldG 236 (363)
+.++++|.||||+++|++|+|+|+|++.+.+..+|||||+|++++|+.|+|+|+||+++++|+|.+||+|+++.|+||||
T Consensus 212 ~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg 291 (372)
T PRK14300 212 KQRNLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEG 291 (372)
T ss_pred eeEEEEEEECCCCCCCcEEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCC
Confidence 99999999999999999999999999987778899999999999999999999999999999999999999999999998
Q ss_pred -eEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhh
Q 017925 237 -ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 297 (363)
Q Consensus 237 -~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~ 297 (363)
.++|+||+|+++|++++|+|+|||..+. ..+|||||+|+|.+|++||++|+++|++|+++
T Consensus 292 ~~i~v~Ip~g~~~g~~iri~g~G~p~~~~-~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~~ 352 (372)
T PRK14300 292 GKVNLTIPAGTQNGDQLRLRSKGMSKMRS-TIRGDMLTHIHVEVPKNLSKRQRELLEEFKKE 352 (372)
T ss_pred CEEEEEECCccCCCcEEEECCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5799999999999999999999997643 36899999999999999999999999999863
No 17
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.7e-63 Score=489.89 Aligned_cols=288 Identities=42% Similarity=0.780 Sum_probs=252.5
Q ss_pred CcccccccccCCCC-C-CCCCCC-C-----C-Ch--hhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEee
Q 017925 1 MYDQYGEAGVKSTV-G-GGSSAY-T-----T-NP--FDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLE 69 (363)
Q Consensus 1 ~YD~~G~~g~~~g~-g-g~~~g~-~-----~-~~--~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~lt 69 (363)
+||+||++++.... + ++.++| . + ++ .|+|++|||++ + +. .+++.++++++|+++.|+||
T Consensus 66 ~YD~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~-~---~~------~~~~~~~~~g~di~~~l~~s 135 (369)
T PRK14282 66 MYDRFGYVGEQPPYQETESGGGFFEDIFKDFENIFNRDIFDIFFGER-R---TQ------EEQREYARRGEDIRYEIEVT 135 (369)
T ss_pred HHhhcCccccccccccCCCCCcccccccccccccccchhhhHhhccc-C---Cc------ccccCCCCCCCCeEEEEEEE
Confidence 59999998765311 0 111121 1 0 11 27888888631 0 00 01112345799999999999
Q ss_pred hhhhhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeec
Q 017925 70 FSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKC 149 (363)
Q Consensus 70 lee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C 149 (363)
|+|+|+|++++|++.+.+.|+.|+|+|++.+....+|+.|+|+|.++..+++++|+++++++|+.|+|+|+++.++|..|
T Consensus 136 lee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C 215 (369)
T PRK14282 136 LSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHEC 215 (369)
T ss_pred HHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCC
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEE
Q 017925 150 SGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVV 229 (363)
Q Consensus 150 ~G~G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~ 229 (363)
+|.|++.+.++|+|+||||+.+|++|+|+|+|++.+.++++|||||+|++++|+.|+|+|+||+++++|+|.||++|+++
T Consensus 216 ~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~ 295 (369)
T PRK14282 216 GGSGRIRRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTV 295 (369)
T ss_pred CCceeEEEEEEEEEEeCCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEE
Confidence 99999999999999999999999999999999998878889999999999999999999999999999999999999999
Q ss_pred EEeccCce-EEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhhcC
Q 017925 230 KVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN 299 (363)
Q Consensus 230 ~v~tldG~-~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~~~ 299 (363)
+|+|+||+ ++|+||+|+++|++++|+|+|||..+. ..+|||||+|+|.+|+.|+.+|++||++|++++.
T Consensus 296 ~i~~ldG~~i~v~Ip~g~~~g~~iri~GkG~p~~~~-~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~~~~ 365 (369)
T PRK14282 296 EVPLPEGGTTMLKIPPGTQPETVFRLKGKGLPNMRY-GRRGDLIVNVHVEIPKRLSREERKLLKELAKKRG 365 (369)
T ss_pred EEeCCCCcEEEEEeCCCcCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 99999997 799999999999999999999997543 3589999999999999999999999999998654
No 18
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.5e-63 Score=490.12 Aligned_cols=284 Identities=47% Similarity=0.888 Sum_probs=247.9
Q ss_pred CcccccccccCCCCCCCCCCCC---CChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhhhcCC
Q 017925 1 MYDQYGEAGVKSTVGGGSSAYT---TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGA 77 (363)
Q Consensus 1 ~YD~~G~~g~~~g~gg~~~g~~---~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~~~G~ 77 (363)
+||+||++++++++.+++++|. .++.|||++|||. +++++ .+...++++++|+++.|.|||+|+|+|+
T Consensus 65 ~yD~~G~~g~~~~~~~~~~~~~~~~~~~~d~f~~~fg~--g~~~~-------~~~~~~~~~g~d~~~~l~lslee~~~G~ 135 (366)
T PRK14294 65 IYDQYGHEGLSGTGFSGFSGFDDIFSSFGDIFEDFFGF--GGGRR-------GRSRTAVRAGADLRYDLTLPFLEAAFGT 135 (366)
T ss_pred HHHhhccccccCCCCCCcCccccchhhhhhhHHHhhcc--CCCcC-------CcccCCCCCCCCceEEEEeeHHHhcCCe
Confidence 5999999988642111112221 2345888888861 11100 0111124579999999999999999999
Q ss_pred eEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCcEEee
Q 017925 78 EKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRL 157 (363)
Q Consensus 78 ~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G~v~~ 157 (363)
+++|.+.+.+.|..|+|+|...+....+|+.|+|+|.+.... |+++++++|+.|+|+|+++.++|..|+|.|++.+
T Consensus 136 ~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 211 (366)
T PRK14294 136 EKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ----GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRV 211 (366)
T ss_pred EEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEe----eeEEEEeeCCCCCCcCeecCcCCCCCCCceEeec
Confidence 999999999999999999999988889999999999876432 7888889999999999999999999999999999
Q ss_pred ceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEeccCce
Q 017925 158 KKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI 237 (363)
Q Consensus 158 ~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tldG~ 237 (363)
.++++|.||||+++|++|+|+|+|++.+.++.+|||||+|++++|+.|+|+|+|||+++.|+|.+||+|++++|+||||+
T Consensus 212 ~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~ 291 (366)
T PRK14294 212 SKTVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGE 291 (366)
T ss_pred ceeEEEecCCCCcCCcEEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCc
Confidence 99999999999999999999999999877788999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 017925 238 SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 298 (363)
Q Consensus 238 ~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~~ 298 (363)
+.|+||+|+++|++++|+|+|||..+. ..+|||||+|+|.+|+.|+++|++||++|+++.
T Consensus 292 ~~v~ip~g~~~g~~iri~G~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~ 351 (366)
T PRK14294 292 RELKIPKGTQPGDIFRFKGKGIPSLRG-GGRGDQIIEVEVKVPTRLTKKQEELLTEFARLE 351 (366)
T ss_pred EEEEECCCcCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 899999999999999999999997654 368999999999999999999999999999753
No 19
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.4e-63 Score=492.09 Aligned_cols=237 Identities=40% Similarity=0.761 Sum_probs=224.3
Q ss_pred CCCCCcEEEEEEeehhhhhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCC
Q 017925 56 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSC 135 (363)
Q Consensus 56 ~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 135 (363)
+++++|+++.|.|||||+|+|++++|.+.+.+.|++|+|+|++.+..+.+|+.|+|+|+++..+ |+|+++++|+.|
T Consensus 136 ~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C 211 (389)
T PRK14295 136 PRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGFSLSEPCPDC 211 (389)
T ss_pred CCCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe----cceEEEEecCCC
Confidence 4579999999999999999999999999999999999999999998889999999999987654 677788999999
Q ss_pred CcccEEeceeeeecCCCcEEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEE
Q 017925 136 GGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 215 (363)
Q Consensus 136 ~G~G~vi~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~ 215 (363)
+|+|+++.++|..|.|.|++.+.++++|+||+|+++|++|+|+|+|++.+.+.++|||||+|++++|+.|+|+|+|||++
T Consensus 212 ~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~ 291 (389)
T PRK14295 212 KGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVT 291 (389)
T ss_pred cceeEEeccCCCCCCCCceEeeeeEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEE
Confidence 99999999999999999999999999999999999999999999999987778899999999999999999999999999
Q ss_pred EEeceEEeecCcEEEEeccCce-EEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHH
Q 017925 216 ISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEEL 294 (363)
Q Consensus 216 ~~I~l~eAllG~~~~v~tldG~-~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l 294 (363)
++|+|.+||+|++++|+||||+ +.|+||+++++|++++|+|+|||... +.+|||||+|+|.||+.|+++|+++|++|
T Consensus 292 ~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~iri~G~G~p~~~--~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l 369 (389)
T PRK14295 292 VPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVLRVRGKGAVRKD--GTRGDLLVTVEVAVPKDLSGKAREALEAF 369 (389)
T ss_pred EeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEEEECCCCcCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999994 79999999999999999999999643 46899999999999999999999999999
Q ss_pred Hhhc
Q 017925 295 ASLR 298 (363)
Q Consensus 295 ~~~~ 298 (363)
++..
T Consensus 370 ~~~~ 373 (389)
T PRK14295 370 REAT 373 (389)
T ss_pred Hhhc
Confidence 9754
No 20
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.6e-63 Score=490.89 Aligned_cols=280 Identities=40% Similarity=0.765 Sum_probs=245.6
Q ss_pred CcccccccccCCCCCCCCCCCC------CChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhhh
Q 017925 1 MYDQYGEAGVKSTVGGGSSAYT------TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESI 74 (363)
Q Consensus 1 ~YD~~G~~g~~~g~gg~~~g~~------~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~~ 74 (363)
+||+||+++++++++ +++|. .++.|+|++|||. ++++ ..+..++++|+|+.+.|.|||+|+|
T Consensus 65 ~yD~~g~~g~~~~~~--~~g~~~~~~~~~~f~d~f~~~fg~--g~~~--------~~~~~~~~~g~di~~~l~vtLee~~ 132 (373)
T PRK14301 65 RYDRFGHAGVNGNGG--FGGFSSAEDIFSHFSDIFGDLFGF--SGGG--------SRRGPRPQAGSDLRYNLTVSFRQAA 132 (373)
T ss_pred hhhhccccccccCCC--CCCcccccccccchHHHHHHHhhc--cCcc--------cccCCCCCCCCCEEEEEeccHHHHh
Confidence 599999998864311 12221 1234667777752 1100 0111234679999999999999999
Q ss_pred cCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCcE
Q 017925 75 FGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGR 154 (363)
Q Consensus 75 ~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G~ 154 (363)
+|++++|.+.+.+.|+.|+|+|++.+..+.+|+.|+|+|++...+ |+++++++|+.|+|+|+++.++|+.|+|.|+
T Consensus 133 ~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 208 (373)
T PRK14301 133 KGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ----GFFQIAVPCPVCRGEGRVITHPCPKCKGSGI 208 (373)
T ss_pred CCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEe----eeEEEEEeCCCCCceeeecCCCCCCCCCCce
Confidence 999999999999999999999999988889999999999986542 7888889999999999999999999999999
Q ss_pred EeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEecc
Q 017925 155 IRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTV 234 (363)
Q Consensus 155 v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tl 234 (363)
+++.++++|+||+|+++|++|+|+|+|++.+.++++|||||+|+|++|+.|+|+|+|||++++|+|.+||+|++++|+||
T Consensus 209 v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tl 288 (373)
T PRK14301 209 VQQTRELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTL 288 (373)
T ss_pred eccceEEEEEeCCCCcCCCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecC
Confidence 99999999999999999999999999999877788999999999999999999999999999999999999999999999
Q ss_pred CceEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhh
Q 017925 235 EGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 297 (363)
Q Consensus 235 dG~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~ 297 (363)
||++.|+||+++++|++++|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|+.+
T Consensus 289 dG~i~v~ip~g~~~g~~~ri~g~G~p~~~~-~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~~ 350 (373)
T PRK14301 289 DDPVTLDIPKGTQSGEVFRLRGKGLPYLGS-SQKGDLLVEVSVVTPTKLTKRQEELLREFEAL 350 (373)
T ss_pred CccEEEEECCCcCCCcEEEEcCCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 999899999999999999999999997654 36899999999999999999999999999975
No 21
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5e-63 Score=493.33 Aligned_cols=237 Identities=35% Similarity=0.706 Sum_probs=225.1
Q ss_pred CCCCCcEEEEEEeehhhhhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCC
Q 017925 56 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSC 135 (363)
Q Consensus 56 ~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 135 (363)
+++++|+++.|+|||+|+|+|++++|.+.+.+.|+.|+|+|++.+..+.+|+.|+|+|+++..+ |+++++++|+.|
T Consensus 143 ~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C 218 (392)
T PRK14279 143 PRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAFGFSEPCTDC 218 (392)
T ss_pred CCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cceEEEEecCCC
Confidence 4579999999999999999999999999999999999999999998899999999999886653 677788999999
Q ss_pred CcccEEeceeeeecCCCcEEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEE
Q 017925 136 GGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 215 (363)
Q Consensus 136 ~G~G~vi~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~ 215 (363)
+|+|+++.++|..|+|.|++++.++++|+||||+++|++|+|+|+|++.+++.++|||||+|+|++|+.|+|+|+||+++
T Consensus 219 ~G~G~~i~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~ 298 (392)
T PRK14279 219 RGTGSIIEDPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVT 298 (392)
T ss_pred CceeEEeCCcCCCCCCCeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEE
Confidence 99999999999999999999999999999999999999999999999988778899999999999999999999999999
Q ss_pred EEeceEEeecCcEEEEeccCceEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHH
Q 017925 216 ISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELA 295 (363)
Q Consensus 216 ~~I~l~eAllG~~~~v~tldG~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~ 295 (363)
++|+|.+||+|++++|+||||++.|+||+++++|++++|+|+|||.. ...+|||||+|+|.||++|+++|+++|++|+
T Consensus 299 ~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~iri~g~G~p~~--~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~ 376 (392)
T PRK14279 299 VPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRILRVRGRGVPKR--SGGAGDLLVTVKVAVPPNLDGAAAEALEAYA 376 (392)
T ss_pred EEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999999998999999999999999999999963 2468999999999999999999999999999
Q ss_pred hhc
Q 017925 296 SLR 298 (363)
Q Consensus 296 ~~~ 298 (363)
++.
T Consensus 377 ~~~ 379 (392)
T PRK14279 377 EAE 379 (392)
T ss_pred hhc
Confidence 753
No 22
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.6e-62 Score=485.78 Aligned_cols=283 Identities=40% Similarity=0.784 Sum_probs=243.4
Q ss_pred CcccccccccCCCCC-CCCCCCCCChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhhhcCCeE
Q 017925 1 MYDQYGEAGVKSTVG-GGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEK 79 (363)
Q Consensus 1 ~YD~~G~~g~~~g~g-g~~~g~~~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~~~G~~~ 79 (363)
+||+||++++..+.+ ++++++ .++.|+|++||+..||++++ + .++++++++|+++.|+|||+|+|+|+++
T Consensus 65 ~yd~~g~~~~~~~~~~~~~~~~-~~~~~~f~~~f~~~fgg~~~-------~-~~~~~~~g~di~~~l~vsLee~~~G~~~ 135 (371)
T PRK10767 65 AYDQYGHAAFEQGGGGGGFGGG-GGFGDIFGDIFGDIFGGGRG-------G-GRQRARRGADLRYNMEITLEEAVRGVTK 135 (371)
T ss_pred HhhhccccccccCCCCCCCCCc-cccccchhhhhhhhccCCcc-------c-cCCCCCCCCCeEEEEEeehHHhhCCeeE
Confidence 599999998864321 111121 12224444444432222100 1 1122457999999999999999999999
Q ss_pred EEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCcEEeece
Q 017925 80 EFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKK 159 (363)
Q Consensus 80 ~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G~v~~~~ 159 (363)
+|.+.+.+.|+.|+|+|...+....+|+.|+|+|.++..+ |+++++++|+.|+|+|+++.++|..|+|.|++++.+
T Consensus 136 ~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~ 211 (371)
T PRK10767 136 EIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ----GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEK 211 (371)
T ss_pred EEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEee----ceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeee
Confidence 9999999999999999999988889999999999876543 788888999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEeccCceEE
Q 017925 160 NIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISE 239 (363)
Q Consensus 160 ~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tldG~~~ 239 (363)
+++|+||||+.+|++|+|+|+|++.+.+..+|||||+|++++|+.|+|+|+||++++.|+|.+||+|++++|+||||.+.
T Consensus 212 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~ 291 (371)
T PRK10767 212 TLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVK 291 (371)
T ss_pred eEEEecCCCCCCCcEEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEE
Confidence 99999999999999999999999977677899999999999999999999999999999999999999999999999889
Q ss_pred EecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhh
Q 017925 240 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 297 (363)
Q Consensus 240 l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~ 297 (363)
|+||+++++|++++|+|+|||..+. ..+|||||+|+|.+|+.|+++|+++|++|++.
T Consensus 292 v~ip~g~~~g~~~~i~g~G~p~~~~-~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~~ 348 (371)
T PRK10767 292 LKIPEGTQTGKLFRLRGKGVKSVRS-GARGDLYCQVVVETPVNLTKRQKELLEEFEES 348 (371)
T ss_pred EEeCCCCCCCCEEEECCCCcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999997654 36899999999999999999999999999864
No 23
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=1.9e-62 Score=484.07 Aligned_cols=287 Identities=49% Similarity=0.898 Sum_probs=254.4
Q ss_pred CcccccccccCCCCCC---CCCCCC----CChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhh
Q 017925 1 MYDQYGEAGVKSTVGG---GSSAYT----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSES 73 (363)
Q Consensus 1 ~YD~~G~~g~~~g~gg---~~~g~~----~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~ 73 (363)
+||+||+++++++.++ ++.++. .++.|+|++|||++++ + ++.+..++++++|+++.|.|||+|+
T Consensus 60 ~yd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~fg~~~g---~------~~~~~~~~~~~~d~~~~l~vsLee~ 130 (354)
T TIGR02349 60 QYDQFGHAGFNGGGGGGGGGFNGFDIGFFGDFGDIFGDFFGGGGG---S------GRRRRSGPRRGEDLRYDLELTFEEA 130 (354)
T ss_pred hhhhcccccccccCcCCCCCcCCccccCcCchhhhHHHHhccCcc---c------CccccCCCCCCCCeEEEEEEEHHHH
Confidence 5999999988643211 111111 2456899999974211 0 0111123468999999999999999
Q ss_pred hcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCc
Q 017925 74 IFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEG 153 (363)
Q Consensus 74 ~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G 153 (363)
|+|+++++.+.+.+.|+.|+|+|+..+....+|+.|+|+|.++..+++++|+++++++|+.|.|+|+++.++|..|+|.|
T Consensus 131 ~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 210 (354)
T TIGR02349 131 VFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKG 210 (354)
T ss_pred hCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCc
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred EEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEec
Q 017925 154 RIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKT 233 (363)
Q Consensus 154 ~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~t 233 (363)
++.+.++++|+||||+.+|++|+|+|+|++.+.+.++|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+|
T Consensus 211 ~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ 290 (354)
T TIGR02349 211 RVKERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPT 290 (354)
T ss_pred EecccceEEEEECCCCCCCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEec
Confidence 99999999999999999999999999999877678899999999999999999999999999999999999999999999
Q ss_pred cCceEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhh
Q 017925 234 VEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 297 (363)
Q Consensus 234 ldG~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~ 297 (363)
|||.++|+||+++++|++++|+|+|||..+.. .+|||||+|+|.+|+.|+++|+++|++|++.
T Consensus 291 ldG~i~v~ip~g~~~g~~~~i~g~G~p~~~~~-~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~~ 353 (354)
T TIGR02349 291 LDGDVKLKIPAGTQSGTVFRLKGKGVPRLRGN-GRGDLLVTVKVETPKNLSKEQKELLEELAEA 353 (354)
T ss_pred CCceEEEEECCcccCCcEEEECCCCcCCCCCC-CCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99988999999999999999999999976543 6899999999999999999999999999864
No 24
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.9e-62 Score=487.62 Aligned_cols=294 Identities=39% Similarity=0.701 Sum_probs=252.9
Q ss_pred CcccccccccCCCCC-CCCCCCCCChhhhhhh---hhCCCCCCCCCCCCCCCCCC-CCCCCCCCCcEEEEEEeehhhhhc
Q 017925 1 MYDQYGEAGVKSTVG-GGSSAYTTNPFDLFET---FFGPSMGGFPGMNQTGFRTR-RRSTVTKGEDLRYDIVLEFSESIF 75 (363)
Q Consensus 1 ~YD~~G~~g~~~g~g-g~~~g~~~~~~diF~~---fFG~~~gg~~~~~~~g~~~~-~~~~~~~g~di~~~l~ltlee~~~ 75 (363)
+||+||+++++++.+ +++++.+.++.|+|++ +|++.++++++++ .+++. ...+..+++|+++.|.|||+|+|+
T Consensus 66 ~yD~~G~~~~~~~~~~~~~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~--~~~~~~~~~~~~~g~di~~~l~vsLee~~~ 143 (386)
T PRK14289 66 RYDQFGHAGVGGAAGGGGFSGEGMSMEDIFSMFGDIFGGHGGGFGGFG--GFGGGGSQQRVFRGSDLRVKVKLNLKEIST 143 (386)
T ss_pred HHHHhcccccccCCCCCCCCCCCcChhhhhHHhhhhhcccccCccccc--ccccccccCCCCCCCCeEEEEEEEHHHhhC
Confidence 499999988764211 1111111234556544 4764333221110 01111 112245789999999999999999
Q ss_pred CCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCcEE
Q 017925 76 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 155 (363)
Q Consensus 76 G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G~v 155 (363)
|++++|++.+.+.|..|+|+|+.......+|+.|+|+|.++..+++++|++++..+|+.|.|+|+++.++|..|+|.|++
T Consensus 144 G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 223 (386)
T PRK14289 144 GVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIV 223 (386)
T ss_pred CeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEE
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred eeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEeccC
Q 017925 156 RLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVE 235 (363)
Q Consensus 156 ~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tld 235 (363)
++.++++|+||+|+++|++|+|+|+|++.+.+..+|||||+|++++|+.|+|+++||++++.|+|.+||+|+++.|+|+|
T Consensus 224 ~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ld 303 (386)
T PRK14289 224 YGEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTID 303 (386)
T ss_pred eeeEEEEEEeCCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCC
Confidence 99999999999999999999999999998777889999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhh
Q 017925 236 GISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASL 297 (363)
Q Consensus 236 G~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~ 297 (363)
|++.|+||+++++|++++|+|+|||..+. ..+|||||+|+|.||+.|+++|+++|++|++.
T Consensus 304 g~i~v~ip~g~~~g~~~ri~g~G~p~~~~-~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~~ 364 (386)
T PRK14289 304 GKAKVKIEAGTQPGKVLRLRNKGLPSVNG-YGTGDLLVNVSVYIPETLSKEEKQTLEKMENS 364 (386)
T ss_pred ceEEEEECCccCCCcEEEECCCCcCCCCC-CCCCcEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 99899999999999999999999997654 36899999999999999999999999999975
No 25
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-61 Score=479.64 Aligned_cols=286 Identities=34% Similarity=0.675 Sum_probs=249.6
Q ss_pred CcccccccccCCCC-CCCCCCCCCChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhhhcCCeE
Q 017925 1 MYDQYGEAGVKSTV-GGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEK 79 (363)
Q Consensus 1 ~YD~~G~~g~~~g~-gg~~~g~~~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~~~G~~~ 79 (363)
+||+||++++.+.. +++++++++++.|+|++|||+. ++++ + +. ..+++++.|+.+.+.|||+|+|+|+++
T Consensus 62 ~yd~~G~~~~~~~~~~~~~~~~~~d~~d~f~~~fg~~--~~~~----~--~~-~~~~~~g~d~~~~l~~sLee~~~G~~~ 132 (371)
T PRK14292 62 HYDRFGTAPGAGMPGGDPFGGMGFDPMDIFEQLFGGA--GFGG----G--RG-RRGPARGDDLETEARITLEQARAGEEV 132 (371)
T ss_pred hHhhcCCcccccccCCcccCccCCChHHHHHHhhCCC--CcCC----C--CC-cccccCCCCeEEEEeccHHHHcCCeEE
Confidence 59999998643211 1112233346779999999742 1110 0 00 112457999999999999999999999
Q ss_pred EEEEeeeEeccCCCCCceeeCc-eeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCcEEeec
Q 017925 80 EFELSHLETCEVCTGTGAKMGS-KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLK 158 (363)
Q Consensus 80 ~i~~~~~~~C~~C~GsG~~~g~-~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G~v~~~ 158 (363)
++.+.+.+.|+.|+|+|+.... ...+|+.|+|+|.+...+++.+|+++++++|+.|+|.|+.+.++|..|+|.|++...
T Consensus 133 ~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 212 (371)
T PRK14292 133 EVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKA 212 (371)
T ss_pred EEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeec
Confidence 9999999999999999998775 478999999999998888888899999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEeccCceE
Q 017925 159 KNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGIS 238 (363)
Q Consensus 159 ~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tldG~~ 238 (363)
++++|.||+|+.+|++|+|+|+|++.+.+ . |||||+|++++|+.|+|+|+||+++++|+|.+|++|+++.|+||||+.
T Consensus 213 ~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~-~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~ 290 (371)
T PRK14292 213 ETVKVKLPRGIDEGYRIRVAGMGNEGPGG-N-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQ 290 (371)
T ss_pred ceEEEEECCCCCCCcEEEEecCcCCCCCC-C-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCE
Confidence 99999999999999999999999997644 3 999999999999999999999999999999999999999999999988
Q ss_pred EEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 017925 239 ELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 298 (363)
Q Consensus 239 ~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~~ 298 (363)
.|+||+|+++|++++|+|+|||..+.. .+|||||+|+|.+|+.|+++|++||++|++..
T Consensus 291 ~v~ip~g~~~g~~~~i~g~G~p~~~~~-~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~ 349 (371)
T PRK14292 291 VIEVKPGTQHGDLHRLRGQGMPRLQGA-GTGDLIVEYEIAVPKQLSPEAREALEAYARAV 349 (371)
T ss_pred EEecCCCcCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999999976543 57999999999999999999999999998643
No 26
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-61 Score=480.27 Aligned_cols=293 Identities=55% Similarity=0.984 Sum_probs=255.4
Q ss_pred CcccccccccCCCCC-CCCCCCCCChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhhhcCCeE
Q 017925 1 MYDQYGEAGVKSTVG-GGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEK 79 (363)
Q Consensus 1 ~YD~~G~~g~~~g~g-g~~~g~~~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~~~G~~~ 79 (363)
+||+||+++++++.+ ++.+++ .++.|+|++|||+. ++++ +.++. .+..++.+++|+.+.|.|||+|+|+|+++
T Consensus 63 ~yd~~g~~g~~~~~~~~~~~~~-~~~~d~f~~~fg~~-~~~~---~~~~~-~~~~~~~kg~di~~~l~vsLee~~~G~~k 136 (374)
T PRK14293 63 RYDQFGEAGVSGAAGFPDMGDM-GGFADIFETFFSGF-GGAG---GQGGR-RRRRGPQRGDDLRYDLKLDFREAIFGGEK 136 (374)
T ss_pred HHhhccccccccCCCcCCcccc-cchHHHHHHHhccc-CCCC---CCCcc-ccccCccCCCCeEEEEEeeHHHHhCCceE
Confidence 599999988764211 111112 13458999999742 1111 00000 11122457899999999999999999999
Q ss_pred EEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCcEEeece
Q 017925 80 EFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKK 159 (363)
Q Consensus 80 ~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G~v~~~~ 159 (363)
++++++.+.|..|+|+|...+....+|+.|+|+|.++..+++++|++++.++|+.|.|.|+++.++|..|.|.|++.+.+
T Consensus 137 ~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~ 216 (374)
T PRK14293 137 EIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTK 216 (374)
T ss_pred EEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccce
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEeccCceEE
Q 017925 160 NIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISE 239 (363)
Q Consensus 160 ~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tldG~~~ 239 (363)
+++|+||||+++|++|+|+|+|++.+.+..+|||||+|++++|+.|+|+|+||+++++|+|.+||+|+++.|+||||+++
T Consensus 217 ~~~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~ 296 (374)
T PRK14293 217 KLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVE 296 (374)
T ss_pred EEEEEeCCCCCCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEE
Confidence 99999999999999999999999877677889999999999999999999999999999999999999999999999988
Q ss_pred EecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhhcC
Q 017925 240 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN 299 (363)
Q Consensus 240 l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~~~ 299 (363)
|+||+++++|++++|+|+|||..+..+.+|||||+|+|.+|+.|+++|+++|++|+++..
T Consensus 297 i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~~~~~ 356 (374)
T PRK14293 297 LTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKLAKIKG 356 (374)
T ss_pred EEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence 999999999999999999999765544689999999999999999999999999997643
No 27
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-60 Score=473.30 Aligned_cols=241 Identities=41% Similarity=0.798 Sum_probs=230.5
Q ss_pred CCCCCcEEEEEEeehhhhhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCC
Q 017925 56 VTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSC 135 (363)
Q Consensus 56 ~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 135 (363)
+++++|+.++|.|||+|+|+|+++++.+.+.+.|+.|+|+|...+....+|+.|+|+|.++..+++.+|+++++.+|+.|
T Consensus 116 ~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 195 (378)
T PRK14283 116 PQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDC 195 (378)
T ss_pred ccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCC
Confidence 35789999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred CcccEEeceeeeecCCCcEEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEE
Q 017925 136 GGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 215 (363)
Q Consensus 136 ~G~G~vi~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~ 215 (363)
.|+|+.+.++|..|+|.|.+.+.++++|.||||+++|++|+|+|+|++.+.+..+|||||+|+|++|+.|+|+|+||+++
T Consensus 196 ~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~ 275 (378)
T PRK14283 196 QGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYE 275 (378)
T ss_pred CccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEE
Confidence 99999999999999999999999999999999999999999999999977677899999999999999999999999999
Q ss_pred EEeceEEeecCcEEEEeccCceEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHH
Q 017925 216 ISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELA 295 (363)
Q Consensus 216 ~~I~l~eAllG~~~~v~tldG~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~ 295 (363)
+.|+|.+|++|+++.|+||||.+.|+||+++++|++++|+|+|||.... ..+|||||+|+|.||+.|+++|+++|++|+
T Consensus 276 ~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~~~-~~~GdL~v~~~v~~P~~l~~~q~~ll~~~~ 354 (378)
T PRK14283 276 KPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKGHGMPSLRW-SGKGNLYVKVKVVVPKKLSPKQKELLREFA 354 (378)
T ss_pred EecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 9999999999999999999998899999999999999999999997654 368999999999999999999999999998
Q ss_pred hh
Q 017925 296 SL 297 (363)
Q Consensus 296 ~~ 297 (363)
+.
T Consensus 355 ~~ 356 (378)
T PRK14283 355 SI 356 (378)
T ss_pred hh
Confidence 64
No 28
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-60 Score=474.04 Aligned_cols=293 Identities=37% Similarity=0.714 Sum_probs=246.8
Q ss_pred CcccccccccCCCCC--CCCCCC----CCChhhhhhhhhCCC-CCC-CCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhh
Q 017925 1 MYDQYGEAGVKSTVG--GGSSAY----TTNPFDLFETFFGPS-MGG-FPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSE 72 (363)
Q Consensus 1 ~YD~~G~~g~~~g~g--g~~~g~----~~~~~diF~~fFG~~-~gg-~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee 72 (363)
+||+||++++..+.+ ++.++| ..++.|+|++||+.. +++ |+++++....+....++.+++|+.+.|.|||+|
T Consensus 63 ~YD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee 142 (382)
T PRK14291 63 LYDQFGHAAFSGSGQQQQGQEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEE 142 (382)
T ss_pred HHhhhcccccccccCccccccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHH
Confidence 599999988754211 111122 125678899986421 111 111100000000112345799999999999999
Q ss_pred hhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCC
Q 017925 73 SIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 152 (363)
Q Consensus 73 ~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~ 152 (363)
+|+|++++|.+.+.+.|..|+|+|++.+....+|+.|+|+|.++.. .|+++++++|+.|+|+|. +.++|..|+|.
T Consensus 143 ~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~ 217 (382)
T PRK14291 143 AYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQR----GGFFRISQTCPTCGGEGV-LREPCSKCNGR 217 (382)
T ss_pred hhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEe----cceEEEEecCCCCCCceE-EccCCCCCCCC
Confidence 9999999999999999999999999999889999999999987664 267777899999999994 78999999999
Q ss_pred cEEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEe
Q 017925 153 GRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVK 232 (363)
Q Consensus 153 G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~ 232 (363)
|++++.++|+|+||||+.+|++|+|+|+|++++.++++|||||+|++++|+.|+|+|+||++++.|+|.+||+|++++|+
T Consensus 218 g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~ 297 (382)
T PRK14291 218 GLVIKKETIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVP 297 (382)
T ss_pred ceEEeeeEEEEEeCCCCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEe
Confidence 99999999999999999999999999999998878899999999999999999999999999999999999999999999
Q ss_pred ccCce-EEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCC--CCC------HHHHHHHHHHHhhcC
Q 017925 233 TVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPN--RIS------AKERELLEELASLRN 299 (363)
Q Consensus 233 tldG~-~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~--~l~------~~q~~ll~~l~~~~~ 299 (363)
|+||+ ++|+||+|+++|++++|+|+|||..+. ..+|||||+|+|.||+ .|| ++|++||++|+++..
T Consensus 298 ~ldG~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~-~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~~ 372 (382)
T PRK14291 298 LLDGKKEKVKIPPGTKEGDKIRVPGKGMPRLKG-SGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLLP 372 (382)
T ss_pred cCCCCEEEEEECCccCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhcC
Confidence 99997 789999999999999999999998654 3689999999999998 599 999999999997664
No 29
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.7e-60 Score=467.37 Aligned_cols=289 Identities=34% Similarity=0.653 Sum_probs=244.7
Q ss_pred CcccccccccCCCCCC-CCCCC--CCChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhhhcCC
Q 017925 1 MYDQYGEAGVKSTVGG-GSSAY--TTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGA 77 (363)
Q Consensus 1 ~YD~~G~~g~~~g~gg-~~~g~--~~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~~~G~ 77 (363)
+||+||++++++++++ ++++| ..++.|+|++|||+.+++ ... ++.++ ..+.+++++|+.+.|.|||+|+|+|+
T Consensus 65 ~yd~~G~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~--~~~-~~~~~-~~~~~~~~~di~~~l~lsLee~~~G~ 140 (365)
T PRK14290 65 QYDQTGTVDFGAGGSNFNWDNFTHFSDINDIFNQIFGGNFGS--DFF-SGFGN-QQSTRNIDLDIYTNLDISLEDAYYGT 140 (365)
T ss_pred hhcccCCcccccCCCCccccccccccchhHHHHHHhcCcccc--ccc-ccccc-ccCCCCCCCCEEEEEEecHHHhcCCE
Confidence 5999999888632111 10111 136779999999842111 000 00001 11112358999999999999999999
Q ss_pred eEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceee--eecCCCCCcccEEeceeeeecCCCcEE
Q 017925 78 EKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQ--VSVCPSCGGEGEVISEYCRKCSGEGRI 155 (363)
Q Consensus 78 ~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~--~~~C~~C~G~G~vi~~~C~~C~G~G~v 155 (363)
+++|.+.+.+.|+.|+|+|...+ ...+|+.|+|+|.++..++ +|++++ ..+|+.|.|.|+++.++|..|+|.|++
T Consensus 141 ~~~i~~~r~~~C~~C~G~g~~~~-~~~~C~~C~G~G~~~~~~~--~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 217 (365)
T PRK14290 141 EKRIKYRRNAMCPDCSGTGAKNG-KLITCPTCHGTGQQRIVRG--QGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTV 217 (365)
T ss_pred EEEEEeeecccCCCCccccCCCC-CCccCCCCCCcCEEEEEec--cCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeE
Confidence 99999999999999999999876 5789999999998776654 566544 489999999999999999999999999
Q ss_pred eeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEeccC
Q 017925 156 RLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVE 235 (363)
Q Consensus 156 ~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tld 235 (363)
+..++|+|+||||+.+|++|+|+|+|+. .++++|||||+|++++|+.|+|+|+||+++++|+|.+||+|+++.|+|++
T Consensus 218 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~--~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~ 295 (365)
T PRK14290 218 VVNEDISVKIPKGATDNLRLRVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFR 295 (365)
T ss_pred EEeeEEEEEECCCCCCCcEEEEccccCC--CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCC
Confidence 9999999999999999999999999986 37789999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhhcC
Q 017925 236 GISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLRN 299 (363)
Q Consensus 236 G~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~~~ 299 (363)
|.++|+||+++++|++++|+|+|||..+.. .+|||||+|+|.+|+.|+++|++||++|+.++.
T Consensus 296 g~i~V~Ip~g~~~g~~iri~g~G~p~~~~~-~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~~~ 358 (365)
T PRK14290 296 EKYNLKIPEGTQPGEVLKIKGAGMPHLNGH-GSGDLLVRINVEVPKRLTSKQKELIREFFDIKE 358 (365)
T ss_pred ceEEEEECCccCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999976543 589999999999999999999999999987654
No 30
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-52 Score=397.32 Aligned_cols=269 Identities=36% Similarity=0.706 Sum_probs=241.3
Q ss_pred CcccccccccCCCCCCCCCCCCCChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhhhcCCeEE
Q 017925 1 MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKE 80 (363)
Q Consensus 1 ~YD~~G~~g~~~g~gg~~~g~~~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~~~G~~~~ 80 (363)
+||+||++++++|+++ +|++ . |++||+ +|+.+ ++ .+.+|+|+.+.|+|||+|+|.|.+++
T Consensus 62 ~yD~~g~~~~~~g~~~--~g~~----~-f~~~F~--~g~~~--------~~---~~~rg~~~~~~~~~~Le~~y~G~s~k 121 (337)
T KOG0712|consen 62 IYDQYGEEGLQGGGGG--GGFG----G-FSQFFG--FGGNG--------GR---GRQRGKDVVHQLKVTLEELYMGKSKK 121 (337)
T ss_pred HHHhhhhhhhcccCCC--CCCc----c-HHHhcc--CCCcC--------cc---ccccCCCceEEEEEEHHHhhcCCccc
Confidence 6999999999765322 2221 2 889997 22211 11 12349999999999999999999999
Q ss_pred EEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeee-ecCCCCCcccEEe--ceeeeecCCCcEEee
Q 017925 81 FELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQV-SVCPSCGGEGEVI--SEYCRKCSGEGRIRL 157 (363)
Q Consensus 81 i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~-~~C~~C~G~G~vi--~~~C~~C~G~G~v~~ 157 (363)
+.++++.+|+.|+|+|.++++.+ .|+.|.|+|...++.++.+|++|++ .+|..|+|.|.+| .+.|+.|.|.++++.
T Consensus 122 l~l~~~~iCs~C~GsGgksg~~~-~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~ 200 (337)
T KOG0712|consen 122 LFLSRNFICSKCSGSGGKSGSAP-KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVRE 200 (337)
T ss_pred eecccCccCCcCCCCCCCCCCCC-CCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhh
Confidence 99999999999999999988764 8999999999999999999999987 7999999999984 689999999999999
Q ss_pred ceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEeccCce
Q 017925 158 KKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI 237 (363)
Q Consensus 158 ~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tldG~ 237 (363)
.+.++|.|++|+.++++|.+.|++++.+ +..+||+++.|..++|+.|.|.++||++..+|+|.||++|+...+.||||+
T Consensus 201 kkil~v~V~~g~~~~~ki~f~geadea~-g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr 279 (337)
T KOG0712|consen 201 KKILEVHVEPGMPHGQKITFKGEADEAP-GTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGR 279 (337)
T ss_pred hheeeccccCCCcccceeeeeeeeeecC-CCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCc
Confidence 9999999999999999999999999876 456999999999999999999999999999999999999999999999998
Q ss_pred -EEEecCCC--CCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHH
Q 017925 238 -SELQVPPG--TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEEL 294 (363)
Q Consensus 238 -~~l~ip~g--tq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l 294 (363)
++|.++|| ++||++++|+|+|||+.+++ +|||||+|+|+||+ |++++..+|+.+
T Consensus 280 ~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~--~g~lyi~~~v~fp~-~~~~~~~~l~~~ 336 (337)
T KOG0712|consen 280 LLKLSSKPGEVISPGDTKRVEGEGMPIFRNP--KGDLYIKFEVKFPK-LSPSQLKMLEDL 336 (337)
T ss_pred eEEEecCCCceeChhHEEeecCCCcccccCC--CCcEEEEEEEEcCC-CChHHHHHHHhh
Confidence 68999998 89999999999999999876 89999999999999 999999999876
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.1e-42 Score=329.62 Aligned_cols=214 Identities=35% Similarity=0.647 Sum_probs=172.3
Q ss_pred CcccccccccCCCC-----C-CCCCCCC----CChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeeh
Q 017925 1 MYDQYGEAGVKSTV-----G-GGSSAYT----TNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEF 70 (363)
Q Consensus 1 ~YD~~G~~g~~~g~-----g-g~~~g~~----~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltl 70 (363)
+||+||++++..+. + +++++|. .++.|+|++|||+. +++++++ ..+.. .....++|.|+++.+.|||
T Consensus 64 ~yD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fgg~-~~~~~~g-~~~~~-~~~~~~~g~dl~~~l~isL 140 (291)
T PRK14299 64 IYDTYGTTAASAGWQGPPPGPPGGGDFSGFNVGDFSDFFQQLFGGR-GGFGGFG-DLFGS-VGRRARKGRDLEAELPLTL 140 (291)
T ss_pred HHHhcCCccccccccCCCCCCCCCCCccccCcCCHHHHHHHHhCCC-CCCCCcc-ccccc-ccCCCCCCCCEEEEEEecH
Confidence 49999998654211 0 1111221 25668999999741 1111110 00111 0112457899999999999
Q ss_pred hhhhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecC
Q 017925 71 SESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCS 150 (363)
Q Consensus 71 ee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~ 150 (363)
+|+|.|+++++++.
T Consensus 141 ~ea~~G~~~~i~l~------------------------------------------------------------------ 154 (291)
T PRK14299 141 EEAYRGGEKVVEVA------------------------------------------------------------------ 154 (291)
T ss_pred HHHhCCCeEEEeeC------------------------------------------------------------------
Confidence 99999999887542
Q ss_pred CCcEEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEE
Q 017925 151 GEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVK 230 (363)
Q Consensus 151 G~G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~ 230 (363)
.++++|+||||+.+|++|+++|+|++. |||||+|++++|+.|+|+|+|||++++|+|.+||+|++++
T Consensus 155 -------g~~~~V~Ip~G~~~G~~ir~~g~G~~~------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~ 221 (291)
T PRK14299 155 -------GERLSVRIPPGVREGQVIRLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVR 221 (291)
T ss_pred -------CEEEEEecCCCcCCCcEEEECCCCCCC------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEE
Confidence 146889999999999999999999863 9999999999999999999999999999999999999999
Q ss_pred EeccCceEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 017925 231 VKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 298 (363)
Q Consensus 231 v~tldG~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~~ 298 (363)
|+||||.++|+||+++++|++++|+|+|||.. ++.+|||||+|+|.+|+.|+++|+++|++|++..
T Consensus 222 v~tldG~~~v~ip~~~~~g~~~rl~g~G~p~~--~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~~~ 287 (291)
T PRK14299 222 VMTLDGPVEVTIPPRTQAGRKLRLKGKGWPRG--PAGRGDQYAEVRITIPTRPTPEEERLYKQLAELY 287 (291)
T ss_pred EECCCCCEEEEeCCCcCCCCEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 99999998999999999999999999999963 2468999999999999999999999999998754
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=4.2e-41 Score=325.98 Aligned_cols=202 Identities=26% Similarity=0.485 Sum_probs=171.5
Q ss_pred ChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhhhcCCeEEEEEeeeEeccCCCCCceeeCcee
Q 017925 24 NPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKM 103 (363)
Q Consensus 24 ~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~ 103 (363)
++.|+|+.|||+. ++. + +....+++.|+.+++.|||+|+|+|+.+++.+.+.+ |
T Consensus 93 ~~~~~f~~~~g~~----~~~------~-~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~----------- 146 (306)
T PRK10266 93 DFDDIFSSIFGQH----ARQ------S-RQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----Y----------- 146 (306)
T ss_pred CHHHHHHHHhCCC----CCC------C-CCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----c-----------
Confidence 5678999999731 110 0 111235789999999999999999999999886532 2
Q ss_pred eeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCcEEeeceEEEEEeCCCCCCCcEEEEccCcCC
Q 017925 104 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDA 183 (363)
Q Consensus 104 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~ 183 (363)
.|.|.+.. ...++++|+||+|+++|++|+++|+|++
T Consensus 147 ------~g~G~~~~--------------------------------------~~~~~~~V~Ip~G~~~G~~i~~~g~G~~ 182 (306)
T PRK10266 147 ------NAFGMIEQ--------------------------------------EIPKTLNVKIPAGVGNGQRIRLKGQGTP 182 (306)
T ss_pred ------cCCCeEEE--------------------------------------eeeEEEEEEECCCCcCCcEEEEecCCcC
Confidence 22232110 1136899999999999999999999999
Q ss_pred CCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEeccCceEEEecCCCCCCCcEEEEccCCCCCCC
Q 017925 184 GPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLN 263 (363)
Q Consensus 184 ~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tldG~~~l~ip~gtq~g~~~~l~g~G~P~~~ 263 (363)
.+++..+|||||+|+++||+.|+|+|+||+++++|||.+|++|+++.|+|+||++.|+||+++++|++++|+|+|||..+
T Consensus 183 ~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~v~v~ip~g~~~g~~~ri~g~G~p~~~ 262 (306)
T PRK10266 183 GENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKK 262 (306)
T ss_pred CCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCccEEEEeCCCcCCCCEEEECCCCCCCCC
Confidence 87778899999999999999999999999999999999999999999999999999999999999999999999999642
Q ss_pred CCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Q 017925 264 KPSIRGDHLFTVKVTIPNRISAKERELLEELASLR 298 (363)
Q Consensus 264 ~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~~ 298 (363)
.+|||||+|+|.+|++|+++|++||++|+++.
T Consensus 263 ---~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~~~ 294 (306)
T PRK10266 263 ---QTGDLYAVLKIVMPPKPDEKTAALWQQLADAQ 294 (306)
T ss_pred ---CCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 58999999999999999999999999999763
No 33
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=100.00 E-value=7.3e-33 Score=285.82 Aligned_cols=161 Identities=17% Similarity=0.153 Sum_probs=140.9
Q ss_pred CCCcEEEEEEeehhhhhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCc
Q 017925 58 KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGG 137 (363)
Q Consensus 58 ~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G 137 (363)
..-||.+.|.|+|+++|+|++++|++.|.+.| |.|
T Consensus 655 ~~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~----g~G----------------------------------------- 689 (871)
T TIGR03835 655 TNVNLVYEEEVPQILFFNNQIKEIKYTRHTVD----GNT----------------------------------------- 689 (871)
T ss_pred cccceEEecccCHHHHhCCCeEEEEEEEeecc----CCC-----------------------------------------
Confidence 34589999999999999999999999876543 111
Q ss_pred ccEEeceeeeecCCCcEEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEE
Q 017925 138 EGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTIS 217 (363)
Q Consensus 138 ~G~vi~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~ 217 (363)
...++..++|+|+||||+.+|++|+|+|+|+.+++ + +|||||+|++++|+.|+|+|+|||++++
T Consensus 690 --------------~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpg-g-~GDLyVvIkVKPHp~FrRdGdDL~~~v~ 753 (871)
T TIGR03835 690 --------------ESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGN-G-CGDLKVVFKVIPSNFFQIKNDGLHVAAL 753 (871)
T ss_pred --------------cceeeeeEEEEEecCCCCCCCCEEEeccccCCCCC-C-CCCEEEEEEEcCCCCeEEECCeEEEEEe
Confidence 11234467999999999999999999999998653 3 4999999999999999999999999999
Q ss_pred eceEEeecCcEEEEeccCceEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEc-CC
Q 017925 218 ISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTI-PN 281 (363)
Q Consensus 218 I~l~eAllG~~~~v~tldG~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~-P~ 281 (363)
|+|.+||||+++.|+||||++.|+||++++||+++||+|+|||..+ +.||||||+|+|.- ++
T Consensus 754 ISL~EALLGgtIeIpTLDGrVkLkIPpgTqpGqvLRIkGKGMP~~~--~~RGDLyV~f~V~~~~k 816 (871)
T TIGR03835 754 VDPLVAYNGGIIDVFGPNKLFNVRIPGGIKVNDQVIFKDLGLTKTK--YDKGSLIVHLYYSSVMK 816 (871)
T ss_pred cCHHHHhcCCEEEeeCCCCCEEEeeCCCCCCCcEEEECCCCCCCCC--CCCCCEEEEEEEeeccc
Confidence 9999999999999999999989999999999999999999999543 46899999999974 44
No 34
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.6e-23 Score=200.87 Aligned_cols=186 Identities=37% Similarity=0.748 Sum_probs=160.0
Q ss_pred CcccccccccCCCCCCCCCCCCCChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhhhcCCeEE
Q 017925 1 MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKE 80 (363)
Q Consensus 1 ~YD~~G~~g~~~g~gg~~~g~~~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~~~G~~~~ 80 (363)
.||+||.++. +++..+++|+|..+|++ . ..+...+.++.+.+.++|++|.+|+.+.
T Consensus 103 ~YD~~~~~~~--------~~~~g~~~~~~~~~~~~------~----------~~~~~~~~~~~~d~~~~f~~A~~g~~~~ 158 (288)
T KOG0715|consen 103 EYDVYGLEQH--------GEFGGNPFDVFLEFFGG------K----------MNKRVPDKDQYYDLSLDFKEAVRGSKKR 158 (288)
T ss_pred HHHHhhhhcc--------ccccCCccchHHHhhcc------c----------ccccccCcccccccccCHHHHhhccccc
Confidence 4999998761 11223789999999973 0 1123456788999999999999999999
Q ss_pred EEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCcEEeeceE
Q 017925 81 FELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKN 160 (363)
Q Consensus 81 i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G~v~~~~~ 160 (363)
+.+.....|.+|.|.|++++.+...|..|.|+|.+....+.+| ... +|..|.+.|.++.+.|..|.|.+.|...+.
T Consensus 159 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f---~~~-~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~ 234 (288)
T KOG0715|consen 159 ISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPF---ILY-TCSYCLGRGLVLRDNCQACSGAGQVRRAKD 234 (288)
T ss_pred eEEEeecccccccCcCcccccccccchhhhCcccccccccCCc---cee-ecccccccceeccchHHHhhcchhhhhhee
Confidence 9999999999999999999999999999999997665444333 333 999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEE
Q 017925 161 IKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLD 222 (363)
Q Consensus 161 l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~e 222 (363)
+.|.+|+|+.++.+|++.+.+.. ||+|.+.|.+++.|+|+|.||++++.|++.+
T Consensus 235 i~i~~~~g~~~~~~l~~~~~~~~--------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 235 IMIVLPAGVRSADTLRFAGHGND--------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred EEeecCcccccccEEEEecCCcc--------eEEEEEEeccCcccccccCcccccccccccC
Confidence 99999999999999999987753 9999999999999999999999999999864
No 35
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.88 E-value=6.6e-23 Score=161.13 Aligned_cols=80 Identities=38% Similarity=0.737 Sum_probs=70.5
Q ss_pred ceeEEEEeceEEeecCcEEEEeccCc-eEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHH
Q 017925 211 DLFSTISISYLDAIMGTVVKVKTVEG-ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERE 289 (363)
Q Consensus 211 DL~~~~~I~l~eAllG~~~~v~tldG-~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ 289 (363)
|||++++|+|++|++|++++|+|+|| .++|+||+++++|++++|+|+|||...+++.+|||||+|+|.+|++||++||+
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk~ 80 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQKE 80 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHHH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHhc
Confidence 89999999999999999999999999 58999999999999999999999988776689999999999999999999998
Q ss_pred H
Q 017925 290 L 290 (363)
Q Consensus 290 l 290 (363)
|
T Consensus 81 l 81 (81)
T PF01556_consen 81 L 81 (81)
T ss_dssp H
T ss_pred C
Confidence 6
No 36
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=9e-20 Score=174.36 Aligned_cols=250 Identities=25% Similarity=0.372 Sum_probs=182.2
Q ss_pred CcccccccccCCCCCCCCCCCCCChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhhhcCCeEE
Q 017925 1 MYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKE 80 (363)
Q Consensus 1 ~YD~~G~~g~~~g~gg~~~g~~~~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~~~G~~~~ 80 (363)
+||+||++++......+.++.+ + .++|+.||+..+..+++ ........+|.++...++.+++++|.+...+
T Consensus 77 ~YD~~GEegL~~~~~~~~~g~~-~-~~~f~~~f~dfg~~~~g-------~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e 147 (336)
T KOG0713|consen 77 HYDTYGEEGLKDENKDGEGGGG-G-NDIFSAFFGDFGVTVGG-------NPLEEALPKGSDVSSDLEKQLEHFYMGNFVE 147 (336)
T ss_pred HHHhhhHhhhcccccccccCCc-c-cchHHHhhcccccccCC-------CcccCCCCCCceEEeehhhchhhhhcccHHH
Confidence 5999999999743100101110 1 48888888753111111 1112235689999999999999999998755
Q ss_pred EEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCcEEeeceE
Q 017925 81 FELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKN 160 (363)
Q Consensus 81 i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G~v~~~~~ 160 (363)
....+.+.|. |.|+ . .|+-. ..+..++...|.+++.+ ...|..|...+.+...++
T Consensus 148 ~~r~~~v~~~-~~g~------~-----~~~~~-~~~~~~~~~~g~~~~~q------------~~~~~~~~~~k~~~e~~~ 202 (336)
T KOG0713|consen 148 EVREKGVYKP-APGT------R-----KCNCR-LEMFTQQEGPGRFQMLQ------------EAVCDECPNVKLVLEEDP 202 (336)
T ss_pred HHhccCceee-cCcc------c-----ccCCh-hhheeeccCCChhhhhh------------hhhhccCCccceeecCCc
Confidence 5444444332 1111 1 11111 12333444444444322 234555556777888999
Q ss_pred EEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEeccCce-EE
Q 017925 161 IKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SE 239 (363)
Q Consensus 161 l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tldG~-~~ 239 (363)
+++.+..+...+....+..+|.+.. -+.+||+++.+...+|+.|.|+++||++.+.|++.+|+.|+..++.++|+. +.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~-~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~ 281 (336)
T KOG0713|consen 203 LEVEFERGDADGPEEIFELEGEPHI-DGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVE 281 (336)
T ss_pred eeeeeeecccCCceeeeeccCCcce-ecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 9999999999999999999998754 578999999999999999999999999999999999999999999999997 46
Q ss_pred EecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCC-CCH
Q 017925 240 LQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNR-ISA 285 (363)
Q Consensus 240 l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~-l~~ 285 (363)
++....+-|+..++.+++|||.+++....|.+|++|.+.+|.+ ++.
T Consensus 282 ~~r~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 282 VSRKKITWPGARTRKKGEGMPLLKNRNEKGNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred hhhhhccccchhhhhhhccchhhhccchhcceeEEecccCcccccch
Confidence 6767789999999999999998776667899999999999964 555
No 37
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.63 E-value=5.3e-16 Score=117.21 Aligned_cols=65 Identities=49% Similarity=1.107 Sum_probs=55.5
Q ss_pred ccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEe-ceeeeecCCCc
Q 017925 89 CEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI-SEYCRKCSGEG 153 (363)
Q Consensus 89 C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi-~~~C~~C~G~G 153 (363)
|+.|+|+|++++..+.+|+.|+|+|++++.+++++++++++++|+.|+|+|++| .++|+.|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 899999999999999999999999999999999999999999999999999999 99999999976
No 38
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=1.2e-14 Score=144.83 Aligned_cols=133 Identities=31% Similarity=0.633 Sum_probs=97.0
Q ss_pred hhhcCCeEEEEEeeeEeccCCCCCceeeC-----ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceee
Q 017925 72 ESIFGAEKEFELSHLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYC 146 (363)
Q Consensus 72 e~~~G~~~~i~~~~~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C 146 (363)
..+.|....- -.....|..|+|+|.... ....+|+.|+|+|.++. .+|+.|+|.|.+.....
T Consensus 146 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~ 212 (371)
T PRK10767 146 DTCHGSGAKP-GTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK------------DPCKKCHGQGRVEKEKT 212 (371)
T ss_pred CCCCCcccCC-CCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC------------CCCCCCCCCceEeeeee
Confidence 3455544321 123468999999997531 24568999999998754 78999999998754321
Q ss_pred --------------eecCCCcE------------Ee-------------------------------------eceEEEE
Q 017925 147 --------------RKCSGEGR------------IR-------------------------------------LKKNIKV 163 (363)
Q Consensus 147 --------------~~C~G~G~------------v~-------------------------------------~~~~l~V 163 (363)
....|.|. +. ....++|
T Consensus 213 l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v 292 (371)
T PRK10767 213 LSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKL 292 (371)
T ss_pred EEEecCCCCCCCcEEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEE
Confidence 12222220 00 0135899
Q ss_pred EeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEE
Q 017925 164 KVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTIS 217 (363)
Q Consensus 164 ~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~ 217 (363)
+||+|+++|++++|+|+|++.+.+..+|||||+|+|..|+.|++++.+|+..+.
T Consensus 293 ~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~ 346 (371)
T PRK10767 293 KIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEFE 346 (371)
T ss_pred EeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999987655678999999999999999999998877653
No 39
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=9.1e-15 Score=143.35 Aligned_cols=133 Identities=32% Similarity=0.628 Sum_probs=98.7
Q ss_pred hhhhhcCCeEEEEEeeeEeccCCCCCceeeC-------ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEe
Q 017925 70 FSESIFGAEKEFELSHLETCEVCTGTGAKMG-------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI 142 (363)
Q Consensus 70 lee~~~G~~~~i~~~~~~~C~~C~GsG~~~g-------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi 142 (363)
..+.+.|.-.+- -....+|++|+|+|.... ...++|++|+|+|.++. .+|++|+|.|.+.
T Consensus 144 ~C~~C~GsGak~-gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~------------~pC~~C~G~G~v~ 210 (371)
T COG0484 144 TCSTCHGSGAKP-GTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK------------DPCGKCKGKGRVK 210 (371)
T ss_pred ECCcCCCCCCCC-CCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC------------CCCCCCCCCCeEe
Confidence 456677763221 236789999999997543 24789999999999874 8999999999976
Q ss_pred ceee--------------eecCCCcE----------------------------------------------Ee---ece
Q 017925 143 SEYC--------------RKCSGEGR----------------------------------------------IR---LKK 159 (363)
Q Consensus 143 ~~~C--------------~~C~G~G~----------------------------------------------v~---~~~ 159 (363)
+..- ....|+|. +. ...
T Consensus 211 ~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g 290 (371)
T COG0484 211 KKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDG 290 (371)
T ss_pred eeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCC
Confidence 5332 12233320 00 113
Q ss_pred EEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEE
Q 017925 160 NIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 215 (363)
Q Consensus 160 ~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~ 215 (363)
.++|+||||+++|++++|+|+|++..++...|||||+|+|.-+..+......|+-+
T Consensus 291 ~~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~~ 346 (371)
T COG0484 291 RVKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEE 346 (371)
T ss_pred CEEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999999999988887789999999999998877665555433
No 40
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=6.1e-14 Score=139.53 Aligned_cols=142 Identities=22% Similarity=0.428 Sum_probs=98.9
Q ss_pred CCCcEEEEEEee-hhhhhcCCeEEEEEeeeEeccCCCCCceeeC-----ceeeeCCCCccccEEEEeeeCCCcceeeeec
Q 017925 58 KGEDLRYDIVLE-FSESIFGAEKEFELSHLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSV 131 (363)
Q Consensus 58 ~g~di~~~l~lt-lee~~~G~~~~i~~~~~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~ 131 (363)
.|....+.+... +.+.+.|....- .....|..|+|+|.... ....+|+.|+|+|.++. .+
T Consensus 129 ~G~~~~i~~~r~~~C~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~ 194 (369)
T PRK14288 129 FGCKKTIKVQYQSVCESCDGTGAKD--KALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK------------TP 194 (369)
T ss_pred CCeEEEEEEEeeccCCCCCCcccCC--CCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc------------cc
Confidence 455444444322 455566654432 24578999999997532 24568999999999764 78
Q ss_pred CCCCCcccEEeceee--------------eecCCCcE-------------------------------------------
Q 017925 132 CPSCGGEGEVISEYC--------------RKCSGEGR------------------------------------------- 154 (363)
Q Consensus 132 C~~C~G~G~vi~~~C--------------~~C~G~G~------------------------------------------- 154 (363)
|+.|+|.|.+....- ..-.|+|.
T Consensus 195 C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG 274 (369)
T PRK14288 195 CQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALG 274 (369)
T ss_pred CccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcC
Confidence 999999998764321 11222220
Q ss_pred ----Ee--eceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCccee
Q 017925 155 ----IR--LKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 213 (363)
Q Consensus 155 ----v~--~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~ 213 (363)
+. ..+.++|+||+++++|++++|+|+|++.+.+...|||||+|+|+.|+.|+.+...|+
T Consensus 275 ~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l 339 (369)
T PRK14288 275 HTIKVPSLKGDELELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELL 339 (369)
T ss_pred CEEEeecCCCCEEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 00 015689999999999999999999998765445699999999999988776654443
No 41
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=3.4e-14 Score=141.37 Aligned_cols=146 Identities=28% Similarity=0.505 Sum_probs=102.8
Q ss_pred CCCcEEEEEEe-ehhhhhcCCeEEEEEeeeEeccCCCCCceeeC---------ceeeeCCCCccccEEEEeeeCCCccee
Q 017925 58 KGEDLRYDIVL-EFSESIFGAEKEFELSHLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFS 127 (363)
Q Consensus 58 ~g~di~~~l~l-tlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~~~~~~~~~~G~~~ 127 (363)
.|....+.+.. .+...+.|....- -.....|+.|+|+|.... ....+|+.|+|+|+++.
T Consensus 141 ~G~~~~i~~~r~~~C~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~---------- 209 (369)
T PRK14282 141 NGAEIPVEYDRYETCPHCGGTGVEP-GSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG---------- 209 (369)
T ss_pred CCeEEEEEeeecccCCCCCccCCCC-CCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC----------
Confidence 45444333322 2344566654321 123468999999997642 24578999999998754
Q ss_pred eeecCCCCCcccEEecee--------------eeecCCCcE---------------------------------------
Q 017925 128 QVSVCPSCGGEGEVISEY--------------CRKCSGEGR--------------------------------------- 154 (363)
Q Consensus 128 ~~~~C~~C~G~G~vi~~~--------------C~~C~G~G~--------------------------------------- 154 (363)
..|+.|+|.|.+.... ...-.|+|.
T Consensus 210 --~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~ 287 (369)
T PRK14282 210 --EYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYL 287 (369)
T ss_pred --CCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHH
Confidence 7899999999765421 112222220
Q ss_pred ---------Ee--eceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEE
Q 017925 155 ---------IR--LKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 216 (363)
Q Consensus 155 ---------v~--~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~ 216 (363)
+. ..++|+|+||+|+++|++|+|+|+|++.+....+|||||+|+|+.|+.|++++.+|+..+
T Consensus 288 eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l 360 (369)
T PRK14282 288 QAILGTTVEVPLPEGGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKEL 360 (369)
T ss_pred HHhCCCEEEEeCCCCcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 11 015799999999999999999999998654556899999999999999999999887653
No 42
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=8.6e-14 Score=138.35 Aligned_cols=131 Identities=30% Similarity=0.628 Sum_probs=98.2
Q ss_pred hhhcCCeEEEEEeeeEeccCCCCCceeeCc---------eeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEe
Q 017925 72 ESIFGAEKEFELSHLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI 142 (363)
Q Consensus 72 e~~~G~~~~i~~~~~~~C~~C~GsG~~~g~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi 142 (363)
..+.|....- .....|+.|+|+|..... ...+|+.|+|+|+++. .+|+.|+|.|.+.
T Consensus 153 ~~C~G~g~~~--~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~ 218 (365)
T PRK14290 153 PDCSGTGAKN--GKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE------------EKCPRCNGTGTVV 218 (365)
T ss_pred CCCccccCCC--CCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc------------CCCCCCCCceeEE
Confidence 3455544322 245789999999975321 2478999999998754 7899999999976
Q ss_pred cee--------------eeecCCCcE----------------------------------------------Ee-eceEE
Q 017925 143 SEY--------------CRKCSGEGR----------------------------------------------IR-LKKNI 161 (363)
Q Consensus 143 ~~~--------------C~~C~G~G~----------------------------------------------v~-~~~~l 161 (363)
... ...-.|+|. +. ...++
T Consensus 219 ~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i 298 (365)
T PRK14290 219 VNEDISVKIPKGATDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKY 298 (365)
T ss_pred EeeEEEEEECCCCCCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceE
Confidence 432 122233221 11 11568
Q ss_pred EEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEE
Q 017925 162 KVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 216 (363)
Q Consensus 162 ~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~ 216 (363)
+|+||+|+++|++|+|+|+|++.+.+..+|||||+|+|..|+.|++++.+|+.++
T Consensus 299 ~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 299 NLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred EEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999999998766667899999999999999999999887663
No 43
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=1.5e-13 Score=137.18 Aligned_cols=134 Identities=31% Similarity=0.542 Sum_probs=97.4
Q ss_pred hhhhhcCCeEEEEEeeeEeccCCCCCceeeC---------ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccE
Q 017925 70 FSESIFGAEKEFELSHLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGE 140 (363)
Q Consensus 70 lee~~~G~~~~i~~~~~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~ 140 (363)
+...+.|...+- -.....|+.|+|+|.... ....+|+.|+|+|.++. .+|+.|.|.|.
T Consensus 143 ~C~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~ 209 (377)
T PRK14298 143 RCSTCSGTGAKP-GTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE------------SPCPVCSGTGK 209 (377)
T ss_pred cCCCCCCCcccC-CCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC------------CCCCCCCCccE
Confidence 344556654322 123467999999997542 24678999999998754 78999999998
Q ss_pred Eeceee--------------eecCCCcE------------------------------------------------Ee-e
Q 017925 141 VISEYC--------------RKCSGEGR------------------------------------------------IR-L 157 (363)
Q Consensus 141 vi~~~C--------------~~C~G~G~------------------------------------------------v~-~ 157 (363)
+....- ..-.|+|. +. .
T Consensus 210 v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tl 289 (377)
T PRK14298 210 VRKTRKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTL 289 (377)
T ss_pred EEEEEEEEecCCCCCCCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecC
Confidence 764321 11222210 00 0
Q ss_pred ceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEE
Q 017925 158 KKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 216 (363)
Q Consensus 158 ~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~ 216 (363)
...++|+||+|+++|++++|+|+|++...+...|||||+|+|..|+.|++++.+|+.++
T Consensus 290 dG~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 290 YGKVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred CCCEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 13479999999999999999999998665556899999999999999999998887665
No 44
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.9e-13 Score=135.98 Aligned_cols=120 Identities=30% Similarity=0.596 Sum_probs=92.6
Q ss_pred eEeccCCCCCceeeC-----ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEecee--------------e
Q 017925 86 LETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEY--------------C 146 (363)
Q Consensus 86 ~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~--------------C 146 (363)
...|+.|+|+|.... ....+|+.|+|+|+++. .+|+.|+|.|.+.... -
T Consensus 161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 228 (366)
T PRK14294 161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV------------SPCKTCHGQGRVRVSKTVQVKIPAGVDTGSR 228 (366)
T ss_pred cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC------------cCCCCCCCceEeecceeEEEecCCCCcCCcE
Confidence 468999999997642 24678999999998754 7899999999876432 1
Q ss_pred eecCCCcE------------------------------------------------Ee-eceEEEEEeCCCCCCCcEEEE
Q 017925 147 RKCSGEGR------------------------------------------------IR-LKKNIKVKVPPGVSTGSILRV 177 (363)
Q Consensus 147 ~~C~G~G~------------------------------------------------v~-~~~~l~V~IP~Gv~~G~~irl 177 (363)
....|.|. +. ....++|+||+|+++|++|+|
T Consensus 229 i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri 308 (366)
T PRK14294 229 LRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRF 308 (366)
T ss_pred EEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEE
Confidence 22233220 00 013468999999999999999
Q ss_pred ccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEE
Q 017925 178 VGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTIS 217 (363)
Q Consensus 178 ~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~ 217 (363)
+|+|++.+.+..+|||||+|+|..|+.|+++..+|+..+.
T Consensus 309 ~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~ 348 (366)
T PRK14294 309 KGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFA 348 (366)
T ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999987655578999999999999999999888876643
No 45
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=2.4e-13 Score=135.13 Aligned_cols=133 Identities=26% Similarity=0.533 Sum_probs=96.6
Q ss_pred hhhhhcCCeEEEEEeeeEeccCCCCCceeeC-----ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEece
Q 017925 70 FSESIFGAEKEFELSHLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISE 144 (363)
Q Consensus 70 lee~~~G~~~~i~~~~~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~ 144 (363)
+.+.+.|.-.. .-.....|..|+|+|.... ....+|+.|+|+|.++. .+|+.|+|.|.+...
T Consensus 148 ~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~ 214 (365)
T PRK14285 148 LCESCLGKKSE-KGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS------------NPCKSCKGKGSLKKK 214 (365)
T ss_pred cCCCCCCcccC-CCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccC------------CCCCCCCCCCEEecc
Confidence 34456665432 1223467999999997532 35678999999998764 789999999987543
Q ss_pred ee--------------eecCCCcE------------------------------------------------Ee--eceE
Q 017925 145 YC--------------RKCSGEGR------------------------------------------------IR--LKKN 160 (363)
Q Consensus 145 ~C--------------~~C~G~G~------------------------------------------------v~--~~~~ 160 (363)
.- ..-.|+|. +. ..+.
T Consensus 215 ~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~ 294 (365)
T PRK14285 215 ETIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKK 294 (365)
T ss_pred EEEEEEECCCCCCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCE
Confidence 21 11222210 00 0157
Q ss_pred EEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEE
Q 017925 161 IKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 215 (363)
Q Consensus 161 l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~ 215 (363)
|+|+||+|+++|++|+|+|+|++.+.+...|||||+|+|+.|+.|++++..|+..
T Consensus 295 v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~ 349 (365)
T PRK14285 295 IKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLEN 349 (365)
T ss_pred EEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999999876555579999999999999999888766544
No 46
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=4.9e-13 Score=133.22 Aligned_cols=129 Identities=25% Similarity=0.539 Sum_probs=92.4
Q ss_pred hhhcCCeEEEEEeeeEeccCCCCCceeeC-----ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceee
Q 017925 72 ESIFGAEKEFELSHLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYC 146 (363)
Q Consensus 72 e~~~G~~~~i~~~~~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C 146 (363)
..+.|....- -.....|+.|+|+|.... ....+|+.|+|+|.++. .+|+.|+|.|.+....-
T Consensus 149 ~~C~G~g~~~-~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~ 215 (372)
T PRK14300 149 DTCHGSGSEK-GETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK------------NPCKKCHGMGRYHKQRN 215 (372)
T ss_pred CCCCCcccCC-CCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC------------CCCCCCCCceEEEeeEE
Confidence 3455544321 223468999999998642 24668999999999865 78999999999754321
Q ss_pred --------------eecCCCc------------------------------------------------EEee--ceEEE
Q 017925 147 --------------RKCSGEG------------------------------------------------RIRL--KKNIK 162 (363)
Q Consensus 147 --------------~~C~G~G------------------------------------------------~v~~--~~~l~ 162 (363)
..-.|.| .+.. .+.|+
T Consensus 216 ~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~ 295 (372)
T PRK14300 216 LSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVN 295 (372)
T ss_pred EEEEECCCCCCCcEEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEE
Confidence 1112211 1111 15899
Q ss_pred EEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCccee
Q 017925 163 VKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 213 (363)
Q Consensus 163 V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~ 213 (363)
|+||+|+++|++|+|+|+|++.+.+..+|||||+|+|..|..|+-+...|+
T Consensus 296 v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~l 346 (372)
T PRK14300 296 LTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELL 346 (372)
T ss_pred EEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999998765567899999999999987765554443
No 47
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=6.7e-13 Score=133.08 Aligned_cols=146 Identities=26% Similarity=0.546 Sum_probs=100.7
Q ss_pred CCCcEEEEEEe-ehhhhhcCCeEEEEEeeeEeccCCCCCceeeC-----ceeeeCCCCccccEEEEeeeCCCcceeeeec
Q 017925 58 KGEDLRYDIVL-EFSESIFGAEKEFELSHLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSV 131 (363)
Q Consensus 58 ~g~di~~~l~l-tlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~ 131 (363)
.|....+.+.- ...+.+.|.-.+.. .....|+.|+|+|.... ....+|+.|+|+|.++. .+
T Consensus 147 ~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~ 213 (391)
T PRK14284 147 KGVEKELLVSGYKSCDACSGSGANSS-QGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT------------DP 213 (391)
T ss_pred CCeeEEEEEeeeccCCCCcccccCCC-CCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC------------Cc
Confidence 45444443322 23444555443222 23468999999997532 24579999999998754 78
Q ss_pred CCCCCcccEEecee--------------eeecCCCc--------------------------------------------
Q 017925 132 CPSCGGEGEVISEY--------------CRKCSGEG-------------------------------------------- 153 (363)
Q Consensus 132 C~~C~G~G~vi~~~--------------C~~C~G~G-------------------------------------------- 153 (363)
|+.|.|.|.+.... -..-.|+|
T Consensus 214 C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~ 293 (391)
T PRK14284 214 CSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAAL 293 (391)
T ss_pred CCCCCCcceecceEEEEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhC
Confidence 99999999875322 11222221
Q ss_pred ----EEee---ceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEE
Q 017925 154 ----RIRL---KKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 216 (363)
Q Consensus 154 ----~v~~---~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~ 216 (363)
.+.. .+.++|+||+|+++|++++|+|+|++.+.+..+|||||+|+|..|+.++.+..+|+..+
T Consensus 294 G~~~~v~tld~g~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 363 (391)
T PRK14284 294 GMKKEIPTLLKEGTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQF 363 (391)
T ss_pred CCeEEEeecCCCcEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Confidence 1211 25789999999999999999999998765567899999999999988887776665443
No 48
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=6e-13 Score=132.65 Aligned_cols=132 Identities=26% Similarity=0.493 Sum_probs=93.6
Q ss_pred hhhhcCCeEEEEEeeeEeccCCCCCceeeC-----ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEecee
Q 017925 71 SESIFGAEKEFELSHLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEY 145 (363)
Q Consensus 71 ee~~~G~~~~i~~~~~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~ 145 (363)
...+.|....- -.....|+.|+|+|.... ....+|+.|+|+|+++. .+|+.|+|.|.+....
T Consensus 147 C~~C~G~G~~~-~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~ 213 (373)
T PRK14301 147 CDDCGGSGAAP-GTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT------------HPCPKCKGSGIVQQTR 213 (373)
T ss_pred CCCCCCcccCC-CCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC------------CCCCCCCCCceeccce
Confidence 34455544321 233468999999997642 24678999999998764 7899999999875422
Q ss_pred --------------eeecCCCcE------------------------------------------------Ee-eceEEE
Q 017925 146 --------------CRKCSGEGR------------------------------------------------IR-LKKNIK 162 (363)
Q Consensus 146 --------------C~~C~G~G~------------------------------------------------v~-~~~~l~ 162 (363)
-....|.|. +. ....++
T Consensus 214 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~ 293 (373)
T PRK14301 214 ELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVT 293 (373)
T ss_pred EEEEEeCCCCcCCCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEE
Confidence 111222210 00 013489
Q ss_pred EEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEE
Q 017925 163 VKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST 215 (363)
Q Consensus 163 V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~ 215 (363)
|+||+|+++|++++|+|+|++.+.+..+|||||+|+|..|+.++.+..+|+..
T Consensus 294 v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~ 346 (373)
T PRK14301 294 LDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLRE 346 (373)
T ss_pred EEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999876556689999999999998887666555544
No 49
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=7.4e-13 Score=131.90 Aligned_cols=134 Identities=28% Similarity=0.569 Sum_probs=96.3
Q ss_pred hhhhhcCCeEEEEEeeeEeccCCCCCceeeC---------ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccE
Q 017925 70 FSESIFGAEKEFELSHLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGE 140 (363)
Q Consensus 70 lee~~~G~~~~i~~~~~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~ 140 (363)
+.+.+.|.... .-.....|+.|+|+|.... ....+|+.|+|+|.++. .+|..|+|.|.
T Consensus 140 ~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~ 206 (371)
T PRK14287 140 TCGTCHGSGAK-PGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK------------QKCATCGGKGK 206 (371)
T ss_pred cCCCCCCcccC-CCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc------------ccCCCCCCeeE
Confidence 34556665432 1233568999999997642 23578999999999765 78999999997
Q ss_pred Eeceee--------------eecCCCcE------------------------------------------------Ee-e
Q 017925 141 VISEYC--------------RKCSGEGR------------------------------------------------IR-L 157 (363)
Q Consensus 141 vi~~~C--------------~~C~G~G~------------------------------------------------v~-~ 157 (363)
+....- ..-.|+|. +. .
T Consensus 207 v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~l 286 (371)
T PRK14287 207 VRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTL 286 (371)
T ss_pred EeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcC
Confidence 754321 11222220 00 0
Q ss_pred ceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEE
Q 017925 158 KKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTI 216 (363)
Q Consensus 158 ~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~ 216 (363)
...++|+||+|+++|++++|+|+|++...+...|||||+|+|..|+.|+++...|+..+
T Consensus 287 dg~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 345 (371)
T PRK14287 287 NGKVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREF 345 (371)
T ss_pred CCCEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 13589999999999999999999998765556899999999999998887776655443
No 50
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=1e-12 Score=131.17 Aligned_cols=130 Identities=27% Similarity=0.551 Sum_probs=91.7
Q ss_pred hhhhcCCeEEEEEeeeEeccCCCCCceeeCc---------eeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEE
Q 017925 71 SESIFGAEKEFELSHLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEV 141 (363)
Q Consensus 71 ee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~v 141 (363)
.+.+.|.-..- -.....|+.|+|+|..... ...+|+.|+|+|.++. .+|+.|+|.|.+
T Consensus 142 C~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 208 (378)
T PRK14278 142 CDRCHGKGTAG-DSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP------------DPCHECAGDGRV 208 (378)
T ss_pred CCCCcCccCCC-CCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC------------CCCCCCCCceeE
Confidence 44456644321 2234689999999975321 3568999999999764 789999999987
Q ss_pred ecee--------------eeecCCCc------------------------------------------------EEe-e-
Q 017925 142 ISEY--------------CRKCSGEG------------------------------------------------RIR-L- 157 (363)
Q Consensus 142 i~~~--------------C~~C~G~G------------------------------------------------~v~-~- 157 (363)
.... -..-.|+| .+. .
T Consensus 209 ~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 288 (378)
T PRK14278 209 RARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAIL 288 (378)
T ss_pred ecceEEEEEECCCCCCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCC
Confidence 5432 11112211 111 1
Q ss_pred ceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCccee
Q 017925 158 KKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 213 (363)
Q Consensus 158 ~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~ 213 (363)
.+.++|+||+|+++|++++|+|+|++...+...|||||+|+|..+..++.+...|+
T Consensus 289 ~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l 344 (378)
T PRK14278 289 DGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELL 344 (378)
T ss_pred CCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHH
Confidence 36789999999999999999999998765567899999999998876654444433
No 51
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=1.2e-12 Score=130.49 Aligned_cols=144 Identities=30% Similarity=0.472 Sum_probs=97.9
Q ss_pred CCCcEEEEEEe-ehhhhhcCCeEEEEEeeeEeccCCCCCceeeC-----ceeeeCCCCccccEEEEeeeCCCcceeeeec
Q 017925 58 KGEDLRYDIVL-EFSESIFGAEKEFELSHLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSV 131 (363)
Q Consensus 58 ~g~di~~~l~l-tlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~ 131 (363)
.|....+.+.. .+.+.+.|.-..- -.....|+.|+|+|.... ....+|+.|+|+|.++. .+
T Consensus 139 ~G~~k~i~~~r~~~C~~C~G~G~~~-~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~ 205 (372)
T PRK14286 139 LGREYKIEIPRLESCVDCNGSGASK-GSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS------------NP 205 (372)
T ss_pred CCeeEEEEeeccccCCCCcCCCcCC-CCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec------------cc
Confidence 45444333321 2334456644321 123468999999997632 25678999999998865 78
Q ss_pred CCCCCcccEEecee--------------eeecCCCcE-------------------------------------------
Q 017925 132 CPSCGGEGEVISEY--------------CRKCSGEGR------------------------------------------- 154 (363)
Q Consensus 132 C~~C~G~G~vi~~~--------------C~~C~G~G~------------------------------------------- 154 (363)
|+.|+|.|.+.... -....|+|.
T Consensus 206 C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~ 285 (372)
T PRK14286 206 CKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAIL 285 (372)
T ss_pred CCCCCCCcEEecceEEEEEECCCCCCCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhC
Confidence 99999999876422 112222210
Q ss_pred -----Ee--eceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeE
Q 017925 155 -----IR--LKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 214 (363)
Q Consensus 155 -----v~--~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~ 214 (363)
+. ..+.|+|+||+|+++|++++|+|+|++...+...|||||+|+|..|+.++.+..+|+.
T Consensus 286 G~~~~i~tldG~~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~ 352 (372)
T PRK14286 286 GAEIEVPTIDGKKAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELIE 352 (372)
T ss_pred CCEEEEeCCCCCEEEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHH
Confidence 00 0256899999999999999999999987655568999999999998877666555443
No 52
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=1.4e-12 Score=130.06 Aligned_cols=145 Identities=26% Similarity=0.505 Sum_probs=101.8
Q ss_pred CCCcEEEEEE-eehhhhhcCCeEEEEEeeeEeccCCCCCceeeCc---------eeeeCCCCccccEEEEeeeCCCccee
Q 017925 58 KGEDLRYDIV-LEFSESIFGAEKEFELSHLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFS 127 (363)
Q Consensus 58 ~g~di~~~l~-ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~---------~~~~C~~C~G~G~~~~~~~~~~G~~~ 127 (363)
.|....+.++ ....+.+.|............|..|+|+|..... ...+|+.|+|.|+.+.
T Consensus 128 ~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~---------- 197 (371)
T PRK14292 128 AGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIIT---------- 197 (371)
T ss_pred CCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecC----------
Confidence 4544444443 2445667776554333346789999999977522 3468999999998754
Q ss_pred eeecCCCCCcccEEecee--------------eeecCCCcE---------------------------------------
Q 017925 128 QVSVCPSCGGEGEVISEY--------------CRKCSGEGR--------------------------------------- 154 (363)
Q Consensus 128 ~~~~C~~C~G~G~vi~~~--------------C~~C~G~G~--------------------------------------- 154 (363)
.+|+.|.|.|.+.... -....|+|.
T Consensus 198 --~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eA 275 (371)
T PRK14292 198 --DPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKA 275 (371)
T ss_pred --CCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCCCCCCEEEEEEEecCCccccchhceeEEeccCHHHH
Confidence 7899999999875321 122333330
Q ss_pred -------Ee-eceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeE
Q 017925 155 -------IR-LKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFS 214 (363)
Q Consensus 155 -------v~-~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~ 214 (363)
+. ....++|+||+|+++|++++|+|+|++.+.+..+|||||+|+|+.|+.|+.+...|+.
T Consensus 276 l~G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~ 343 (371)
T PRK14292 276 ALGGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALE 343 (371)
T ss_pred hCCCeEEEECCCCCEEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 01 0123579999999999999999999987666678999999999999888766655543
No 53
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.35 E-value=1.3e-12 Score=129.35 Aligned_cols=116 Identities=33% Similarity=0.732 Sum_probs=87.2
Q ss_pred eEeccCCCCCceeeC---------ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEecee-----------
Q 017925 86 LETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEY----------- 145 (363)
Q Consensus 86 ~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~----------- 145 (363)
...|..|+|+|.... ....+|+.|+|+|++++ .+|+.|.|.|.+....
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 227 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK------------EPCSTCKGKGRVKERKTITVKIPAGVD 227 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC------------CCCCCCCCCcEecccceEEEEECCCCC
Confidence 568999999997542 23568999999998764 6799999999875422
Q ss_pred ---eeecCCCcE------------------------------------------------Ee-eceEEEEEeCCCCCCCc
Q 017925 146 ---CRKCSGEGR------------------------------------------------IR-LKKNIKVKVPPGVSTGS 173 (363)
Q Consensus 146 ---C~~C~G~G~------------------------------------------------v~-~~~~l~V~IP~Gv~~G~ 173 (363)
-....|+|. +. ....++|+||+|+++|+
T Consensus 228 ~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~ 307 (354)
T TIGR02349 228 TGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGT 307 (354)
T ss_pred CCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCc
Confidence 111222220 00 01368999999999999
Q ss_pred EEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCccee
Q 017925 174 ILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 213 (363)
Q Consensus 174 ~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~ 213 (363)
+++|+|+|++.+.+..+|||||+|+|..|+.|+++..+++
T Consensus 308 ~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l 347 (354)
T TIGR02349 308 VFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELL 347 (354)
T ss_pred EEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 9999999998765557899999999999998887766554
No 54
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=1.5e-12 Score=130.20 Aligned_cols=129 Identities=23% Similarity=0.492 Sum_probs=90.0
Q ss_pred hhhhcCCeEEEEEeeeEeccCCCCCceeeC---------ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEE
Q 017925 71 SESIFGAEKEFELSHLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEV 141 (363)
Q Consensus 71 ee~~~G~~~~i~~~~~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~v 141 (363)
.+.+.|.-..- -.....|+.|+|+|.... ....+|+.|+|+|.++. .+|+.|+|.|.+
T Consensus 149 C~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~ 215 (380)
T PRK14276 149 CHTCNGSGAKP-GTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK------------EPCQTCHGTGHE 215 (380)
T ss_pred CCCCcCcccCC-CCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc------------CCCCCCCCceEE
Confidence 34455544321 123468999999997632 13578999999998865 789999999986
Q ss_pred eceeee--------------ecCCCc------------E------------------------------------Ee-ec
Q 017925 142 ISEYCR--------------KCSGEG------------R------------------------------------IR-LK 158 (363)
Q Consensus 142 i~~~C~--------------~C~G~G------------~------------------------------------v~-~~ 158 (363)
....-. .-.|+| . +. ..
T Consensus 216 ~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld 295 (380)
T PRK14276 216 KQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVH 295 (380)
T ss_pred EEEEEEEEEeCCCccCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCC
Confidence 543211 112211 0 00 01
Q ss_pred eEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 017925 159 KNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 212 (363)
Q Consensus 159 ~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL 212 (363)
..++|+||+|+++|++++|+|+|++.+.+..+|||||+|+|..+..+..+...|
T Consensus 296 g~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~ 349 (380)
T PRK14276 296 GDVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEA 349 (380)
T ss_pred CcEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 358999999999999999999999876555689999999999887665544433
No 55
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=2e-12 Score=129.94 Aligned_cols=141 Identities=30% Similarity=0.567 Sum_probs=96.5
Q ss_pred CCCcEEEEEEe-ehhhhhcCCeEEEEEeeeEeccCCCCCceeeCc---------eeeeCCCCccccEEEEeeeCCCccee
Q 017925 58 KGEDLRYDIVL-EFSESIFGAEKEFELSHLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFS 127 (363)
Q Consensus 58 ~g~di~~~l~l-tlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~---------~~~~C~~C~G~G~~~~~~~~~~G~~~ 127 (363)
.|....+.+.. .+...+.|....- .....|..|+|+|..... ...+|+.|+|+|.++.
T Consensus 152 ~G~~~~i~~~r~~~C~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~---------- 219 (397)
T PRK14281 152 KGVEKTLKIKKQVPCKECNGTGSKT--GATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK---------- 219 (397)
T ss_pred CCeEEEEEEEeeecCCCCCCcccCC--CCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC----------
Confidence 45444444322 2344456654332 245789999999976321 3568999999999865
Q ss_pred eeecCCCCCcccEEecee--------------eeecCCCcE---------------------------------------
Q 017925 128 QVSVCPSCGGEGEVISEY--------------CRKCSGEGR--------------------------------------- 154 (363)
Q Consensus 128 ~~~~C~~C~G~G~vi~~~--------------C~~C~G~G~--------------------------------------- 154 (363)
.+|+.|+|.|.+.... -....|+|.
T Consensus 220 --~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~ 297 (397)
T PRK14281 220 --DRCPACYGEGIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYP 297 (397)
T ss_pred --CCCCCCCCCccEecceEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHH
Confidence 7899999999976432 112222220
Q ss_pred ---------Ee-eceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 017925 155 ---------IR-LKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 212 (363)
Q Consensus 155 ---------v~-~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL 212 (363)
+. ....++|+||+|+++|++++|+|+|++.+.+...|||||+|+|..+..++.+...|
T Consensus 298 eAl~G~~~~i~tldg~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~ 365 (397)
T PRK14281 298 DLVLGTKVEVPTLDGAVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKEL 365 (397)
T ss_pred HHhcCCeEEeecCCccEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHH
Confidence 11 01458999999999999999999999876555789999999999887665544433
No 56
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.33 E-value=2.5e-12 Score=128.94 Aligned_cols=142 Identities=26% Similarity=0.509 Sum_probs=95.9
Q ss_pred CCCCcEEEEEEe-ehhhhhcCCeEEEEEeeeEeccCCCCCceeeC-----ceeeeCCCCccccEEEEeeeCCCcceeeee
Q 017925 57 TKGEDLRYDIVL-EFSESIFGAEKEFELSHLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVS 130 (363)
Q Consensus 57 ~~g~di~~~l~l-tlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~ 130 (363)
..|....+.+.. .+...+.|.-..- -.....|+.|+|+|.... ....+|+.|+|+|+++. .
T Consensus 161 ~~G~~~~v~~~~~~~C~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~------------~ 227 (392)
T PRK14279 161 AKGVTMPLRLTSPAPCTTCHGSGARP-GTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE------------D 227 (392)
T ss_pred hCCeEEEEeeeccccCCCCccccccC-CCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC------------C
Confidence 345444333321 2334455654322 224578999999998642 24679999999999865 7
Q ss_pred cCCCCCcccEEeceee--------------eecCCCcE------------------------------------------
Q 017925 131 VCPSCGGEGEVISEYC--------------RKCSGEGR------------------------------------------ 154 (363)
Q Consensus 131 ~C~~C~G~G~vi~~~C--------------~~C~G~G~------------------------------------------ 154 (363)
+|..|.|.|.+....- ..-.|+|.
T Consensus 228 ~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl 307 (392)
T PRK14279 228 PCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELA 307 (392)
T ss_pred cCCCCCCCeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHc
Confidence 8999999998764321 11222210
Q ss_pred ------Ee-eceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 017925 155 ------IR-LKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 212 (363)
Q Consensus 155 ------v~-~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL 212 (363)
+. ....++|+||+|+++|++|+|+|+|++.. +..+|||||+|+|..++.+..+...|
T Consensus 308 ~G~~~~v~~ldg~i~v~Ip~g~~~g~~iri~g~G~p~~-~~~~GDL~I~~~v~~P~~Ls~~q~~~ 371 (392)
T PRK14279 308 LGSTLSVPTLDGPVGVKVPAGTADGRILRVRGRGVPKR-SGGAGDLLVTVKVAVPPNLDGAAAEA 371 (392)
T ss_pred CCceEEEEcCCceEEEEECCCCCCCCEEEECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 00 01458999999999999999999999864 45689999999999887665444433
No 57
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.32 E-value=3.5e-12 Score=127.28 Aligned_cols=129 Identities=31% Similarity=0.591 Sum_probs=89.9
Q ss_pred hhhhcCCeEEEEEeeeEeccCCCCCceeeC---------ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEE
Q 017925 71 SESIFGAEKEFELSHLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEV 141 (363)
Q Consensus 71 ee~~~G~~~~i~~~~~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~v 141 (363)
.+.+.|.-..- -.....|..|+|+|.... ....+|+.|+|+|.++. .+|+.|+|.|.+
T Consensus 146 C~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 212 (376)
T PRK14280 146 CDTCHGSGAKP-GTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK------------EKCPTCHGKGKV 212 (376)
T ss_pred CCCCCCcccCC-CCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec------------CCCCCCCCceEE
Confidence 44556644321 123567999999997532 24568999999998764 789999999987
Q ss_pred eceee--------------eecCCCc------------E------------------------------------Ee-ec
Q 017925 142 ISEYC--------------RKCSGEG------------R------------------------------------IR-LK 158 (363)
Q Consensus 142 i~~~C--------------~~C~G~G------------~------------------------------------v~-~~ 158 (363)
....- ..-.|+| . +. ..
T Consensus 213 ~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld 292 (376)
T PRK14280 213 RKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLH 292 (376)
T ss_pred EEEEEEEEEeCCCCcCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCC
Confidence 54320 1112211 0 11 01
Q ss_pred eEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 017925 159 KNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 212 (363)
Q Consensus 159 ~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL 212 (363)
..++|+||+|+++|++++|+|+|++...+...|||||+|+|..+..++.+...|
T Consensus 293 g~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~ 346 (376)
T PRK14280 293 GKVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKEL 346 (376)
T ss_pred ceEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 358999999999999999999999866555689999999999887665444333
No 58
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.32 E-value=2.7e-12 Score=128.04 Aligned_cols=133 Identities=25% Similarity=0.506 Sum_probs=94.6
Q ss_pred hhhhcCCeEEEEEeeeEeccCCCCCceee-------C--ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEE
Q 017925 71 SESIFGAEKEFELSHLETCEVCTGTGAKM-------G--SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEV 141 (363)
Q Consensus 71 ee~~~G~~~~i~~~~~~~C~~C~GsG~~~-------g--~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~v 141 (363)
...+.|...... .....|..|+|+|... + ....+|+.|+|+|+++. .+|..|.|.|.+
T Consensus 146 C~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 212 (374)
T PRK14293 146 CETCRGSGAKPG-TGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE------------DPCDACGGQGVK 212 (374)
T ss_pred CCCCCCcCCCCC-CCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec------------cCCCCCCCCccc
Confidence 344555433221 2346899999999753 1 23578999999999765 689999999986
Q ss_pred eceee--------------eecCCCcE------------------------------------------------Eee-c
Q 017925 142 ISEYC--------------RKCSGEGR------------------------------------------------IRL-K 158 (363)
Q Consensus 142 i~~~C--------------~~C~G~G~------------------------------------------------v~~-~ 158 (363)
....- ..-.|.|. +.. .
T Consensus 213 ~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ld 292 (374)
T PRK14293 213 QVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVD 292 (374)
T ss_pred ccceEEEEEeCCCCCCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCC
Confidence 54211 11122110 000 1
Q ss_pred eEEEEEeCCCCCCCcEEEEccCcCCCCCC-CCCccEEEEEEEEeccccccCCcceeEEE
Q 017925 159 KNIKVKVPPGVSTGSILRVVGEGDAGPRG-GPPGDLYVYLDVEEIPGIQRDGIDLFSTI 216 (363)
Q Consensus 159 ~~l~V~IP~Gv~~G~~irl~G~G~~~~~g-~~~GDL~V~i~v~~h~~f~R~G~DL~~~~ 216 (363)
..++|+||+++++|++++|+|+|++.+.+ +..|||||+|+|..|+.|++++.+|+..+
T Consensus 293 G~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l 351 (374)
T PRK14293 293 GPVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL 351 (374)
T ss_pred CCEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999999986543 35799999999999999999998877654
No 59
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.32 E-value=3.2e-12 Score=127.74 Aligned_cols=129 Identities=26% Similarity=0.518 Sum_probs=89.5
Q ss_pred hhhhcCCeEEEEEeeeEeccCCCCCceeeC---------ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEE
Q 017925 71 SESIFGAEKEFELSHLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEV 141 (363)
Q Consensus 71 ee~~~G~~~~i~~~~~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~v 141 (363)
+..+.|.-.. .-.....|+.|+|+|.... ....+|+.|+|+|.++. .+|..|+|.|.+
T Consensus 151 C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v 217 (380)
T PRK14297 151 CETCNGTGAK-PGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE------------DPCNKCHGKGKV 217 (380)
T ss_pred CCCccccccc-CCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC------------CCCCCCCCCeEE
Confidence 3445554432 1122568999999997632 24678999999998764 789999999965
Q ss_pred eceee--------------eecCCCc------------------------------------------------EEe-ec
Q 017925 142 ISEYC--------------RKCSGEG------------------------------------------------RIR-LK 158 (363)
Q Consensus 142 i~~~C--------------~~C~G~G------------------------------------------------~v~-~~ 158 (363)
....- ..-.|+| .+. ..
T Consensus 218 ~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ld 297 (380)
T PRK14297 218 RKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVD 297 (380)
T ss_pred EeEeEEEEEeCCCCCCCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCC
Confidence 43221 1111211 000 01
Q ss_pred eEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 017925 159 KNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 212 (363)
Q Consensus 159 ~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL 212 (363)
..++|+||+|+++|++++|+|+|++...+...|||||+|+|..+..+..+...|
T Consensus 298 g~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~ 351 (380)
T PRK14297 298 GEVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEA 351 (380)
T ss_pred CcEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHHH
Confidence 458999999999999999999999866556789999999999887665544433
No 60
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.31 E-value=4.7e-12 Score=126.79 Aligned_cols=143 Identities=27% Similarity=0.495 Sum_probs=95.3
Q ss_pred CCCcEEEEEEee-hhhhhcCCeEEEEEeeeEeccCCCCCceeeC---------ceeeeCCCCccccEEEEeeeCCCccee
Q 017925 58 KGEDLRYDIVLE-FSESIFGAEKEFELSHLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFS 127 (363)
Q Consensus 58 ~g~di~~~l~lt-lee~~~G~~~~i~~~~~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~~~~~~~~~~G~~~ 127 (363)
.|....+.++.. +...+.|....- -.....|..|+|+|.... ....+|+.|+|+|.++.
T Consensus 144 ~G~~~~v~~~r~~~C~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~---------- 212 (386)
T PRK14277 144 FGTEKEIEVERFEKCDVCKGSGAKP-GSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT---------- 212 (386)
T ss_pred CCeEEEEEEEeeccCCCCCCCCcCC-CCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc----------
Confidence 455444443322 233455544321 123468999999997642 13468999999998864
Q ss_pred eeecCCCCCcccEEeceee--------------eecCCCcE------------E--------------------------
Q 017925 128 QVSVCPSCGGEGEVISEYC--------------RKCSGEGR------------I-------------------------- 155 (363)
Q Consensus 128 ~~~~C~~C~G~G~vi~~~C--------------~~C~G~G~------------v-------------------------- 155 (363)
.+|+.|+|.|.+....- ..-.|+|. +
T Consensus 213 --~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~ 290 (386)
T PRK14277 213 --DPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFT 290 (386)
T ss_pred --CCCCCCCCCcEEeeeeEEEEecCCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHH
Confidence 78999999998754321 12222221 0
Q ss_pred --------ee---ceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCccee
Q 017925 156 --------RL---KKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 213 (363)
Q Consensus 156 --------~~---~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~ 213 (363)
.. ...++|+||+|+++|++++|+|+|++...+...|||||+|+|..+..++.+..+++
T Consensus 291 eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~l 359 (386)
T PRK14277 291 DAALGGEIEIPTLDGKVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELL 359 (386)
T ss_pred HHhCCCEEEEEcCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHH
Confidence 00 12378999999999999999999998665556799999999998876655444433
No 61
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.31 E-value=4.6e-12 Score=126.93 Aligned_cols=114 Identities=31% Similarity=0.591 Sum_probs=84.9
Q ss_pred eeEeccCCCCCceeeCc---------eeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEecee----------
Q 017925 85 HLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEY---------- 145 (363)
Q Consensus 85 ~~~~C~~C~GsG~~~g~---------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~---------- 145 (363)
....|..|+|+|..... ...+|+.|+|+|+++. ..|+.|+|.|.+....
T Consensus 170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~ 237 (386)
T PRK14289 170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK------------KKCKKCGGEGIVYGEEVITVKIPAGV 237 (386)
T ss_pred CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC------------cCCCCCCCCcEEeeeEEEEEEeCCCC
Confidence 45789999999987522 3578999999998754 7899999999875432
Q ss_pred ----eeecCCCcE------------------------------------------------Eee-ceEEEEEeCCCCCCC
Q 017925 146 ----CRKCSGEGR------------------------------------------------IRL-KKNIKVKVPPGVSTG 172 (363)
Q Consensus 146 ----C~~C~G~G~------------------------------------------------v~~-~~~l~V~IP~Gv~~G 172 (363)
-..-.|+|. +.. ...++|+||+|+++|
T Consensus 238 ~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g 317 (386)
T PRK14289 238 AEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPG 317 (386)
T ss_pred CCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCC
Confidence 111222210 110 145899999999999
Q ss_pred cEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCc
Q 017925 173 SILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGI 210 (363)
Q Consensus 173 ~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~ 210 (363)
++++|+|+|.+.+.+..+|||||+|+|+.+..++.+..
T Consensus 318 ~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q~ 355 (386)
T PRK14289 318 KVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEEK 355 (386)
T ss_pred cEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHHH
Confidence 99999999998766667899999999998866554433
No 62
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.29 E-value=6.2e-12 Score=126.03 Aligned_cols=141 Identities=27% Similarity=0.492 Sum_probs=95.7
Q ss_pred CCCcEEEEEEe-ehhhhhcCCeEEEEEeeeEeccCCCCCceeeC-----ceeeeCCCCccccEEEEeeeCCCcceeeeec
Q 017925 58 KGEDLRYDIVL-EFSESIFGAEKEFELSHLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSV 131 (363)
Q Consensus 58 ~g~di~~~l~l-tlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~ 131 (363)
.|....+.+.- .+.+.+.|.-..- -.....|..|+|+|.... ....+|+.|+|+|.++. .+
T Consensus 155 ~G~~k~i~~~r~~~C~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~ 221 (389)
T PRK14295 155 DGATVPLRLTSQAPCPACSGTGAKN-GTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD------------DP 221 (389)
T ss_pred CCceEEEEeeccccCCCCcccccCC-CCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec------------cC
Confidence 45544444321 2345566654321 133478999999997532 24578999999999865 78
Q ss_pred CCCCCcccEEecee--------------eeecCCCc--------------------------------------------
Q 017925 132 CPSCGGEGEVISEY--------------CRKCSGEG-------------------------------------------- 153 (363)
Q Consensus 132 C~~C~G~G~vi~~~--------------C~~C~G~G-------------------------------------------- 153 (363)
|..|.|.|.+.... -..-.|+|
T Consensus 222 C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~ 301 (389)
T PRK14295 222 CLVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAAL 301 (389)
T ss_pred CCCCCCCceEeeeeEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhC
Confidence 99999999875432 11112211
Q ss_pred ----EEe--eceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 017925 154 ----RIR--LKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 212 (363)
Q Consensus 154 ----~v~--~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL 212 (363)
.+. ..++++|+||+|+++|++|+|+|+|++.. ++.+|||||+|+|..+..+..+...|
T Consensus 302 G~~~~I~tldG~~~~v~ip~g~~~g~~iri~G~G~p~~-~~~~GDL~i~~~v~~P~~Ls~~qk~~ 365 (389)
T PRK14295 302 GAEVRVPTLGGPPVTVKLPPGTPNGRVLRVRGKGAVRK-DGTRGDLLVTVEVAVPKDLSGKAREA 365 (389)
T ss_pred CCeEEEECCCCCEEEEEECCccCCCcEEEECCCCcCCC-CCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 010 01589999999999999999999999864 45689999999999887665444433
No 63
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=8.2e-12 Score=124.75 Aligned_cols=143 Identities=26% Similarity=0.502 Sum_probs=95.8
Q ss_pred CCCcEEEEEEee-hhhhhcCCeEEEEEeeeEeccCCCCCceeeC---------ceeeeCCCCccccEEEEeeeCCCccee
Q 017925 58 KGEDLRYDIVLE-FSESIFGAEKEFELSHLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFS 127 (363)
Q Consensus 58 ~g~di~~~l~lt-lee~~~G~~~~i~~~~~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~~~~~~~~~~G~~~ 127 (363)
.|....+.+... ..+.+.|....- -.....|..|+|+|.... ....+|++|+|+|..+.
T Consensus 135 ~G~~~~i~~~r~~~C~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~---------- 203 (378)
T PRK14283 135 SGVEKDIKVRHTKKCPVCNGSRAEP-GSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE---------- 203 (378)
T ss_pred CCcceEEEeeeeccCCCCCccccCC-CCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC----------
Confidence 454444443322 344566654321 123467999999998642 23578999999998754
Q ss_pred eeecCCCCCcccEEeceeee--------------ecCCCc----------------------------------------
Q 017925 128 QVSVCPSCGGEGEVISEYCR--------------KCSGEG---------------------------------------- 153 (363)
Q Consensus 128 ~~~~C~~C~G~G~vi~~~C~--------------~C~G~G---------------------------------------- 153 (363)
.+|..|+|.|.+....-. .-.|+|
T Consensus 204 --~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~ 281 (378)
T PRK14283 204 --KPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFV 281 (378)
T ss_pred --CCCCCCCCceeeccceeEEEEECCCCCCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHH
Confidence 789999999987543211 111211
Q ss_pred --------EEe-eceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCccee
Q 017925 154 --------RIR-LKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLF 213 (363)
Q Consensus 154 --------~v~-~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~ 213 (363)
.+. ...+|+|+||+|+++|++++|+|+|++...+...|||||+|+|..++.++-+...|+
T Consensus 282 eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll 350 (378)
T PRK14283 282 QAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELL 350 (378)
T ss_pred HHhcCCeEEEEcCCceEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHH
Confidence 011 013689999999999999999999998655556899999999998876654444333
No 64
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=8.2e-12 Score=124.45 Aligned_cols=142 Identities=23% Similarity=0.453 Sum_probs=94.7
Q ss_pred CCCcEEEEEE-eehhhhhcCCeEEEEEeeeEeccCCCCCceeeCc---------eeeeCCCCccccEEEEeeeCCCccee
Q 017925 58 KGEDLRYDIV-LEFSESIFGAEKEFELSHLETCEVCTGTGAKMGS---------KMRICSTCGGRGQVMRTDQTPFGLFS 127 (363)
Q Consensus 58 ~g~di~~~l~-ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~---------~~~~C~~C~G~G~~~~~~~~~~G~~~ 127 (363)
.|....+.+. ..+...+.|...+- -.....|..|+|+|..... ...+|+.|+|+|.++.
T Consensus 138 ~G~~~~i~~~~~~~C~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~---------- 206 (372)
T PRK14296 138 FGVDKIIELDLLTNCSKCFGSGAES-NSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK---------- 206 (372)
T ss_pred CCeeEEEEEeeeeccCCCCCCccCC-CCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec----------
Confidence 4444444332 23455666654322 1234679999999976432 3468999999999865
Q ss_pred eeecCCCCCcccEEecee--------------eeecCCCc-----------------------EEee-------------
Q 017925 128 QVSVCPSCGGEGEVISEY--------------CRKCSGEG-----------------------RIRL------------- 157 (363)
Q Consensus 128 ~~~~C~~C~G~G~vi~~~--------------C~~C~G~G-----------------------~v~~------------- 157 (363)
.+|+.|+|.|.+.... -..-.|+| ..+.
T Consensus 207 --~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl 284 (372)
T PRK14296 207 --NKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISY 284 (372)
T ss_pred --ccccCCCCceEEEEEEEEEEEECCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCH
Confidence 7899999999765322 11122221 0010
Q ss_pred --------------ceEEEEEeCCCCCCCcEEEEccCcCCCC-CCCCCccEEEEEEEEeccccccCCcce
Q 017925 158 --------------KKNIKVKVPPGVSTGSILRVVGEGDAGP-RGGPPGDLYVYLDVEEIPGIQRDGIDL 212 (363)
Q Consensus 158 --------------~~~l~V~IP~Gv~~G~~irl~G~G~~~~-~g~~~GDL~V~i~v~~h~~f~R~G~DL 212 (363)
...++|+||+++++|++++|+|+|++.. .....|||||+|+|..+..+..+...|
T Consensus 285 ~eAllG~~~~i~tldG~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~ 354 (372)
T PRK14296 285 LDAILGNEIIIKTLDGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKEL 354 (372)
T ss_pred HHHhCCCEEEeeCCCCCEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHH
Confidence 1348999999999999999999999733 234579999999999887665544443
No 65
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.26 E-value=2.7e-11 Score=121.17 Aligned_cols=106 Identities=34% Similarity=0.663 Sum_probs=80.0
Q ss_pred eeEeccCCCCCceeeC-----ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEecee--------------
Q 017925 85 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEY-------------- 145 (363)
Q Consensus 85 ~~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~-------------- 145 (363)
....|+.|+|+|.... ....+|+.|+|+|. +. .+|+.|+|.|.+....
T Consensus 172 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 238 (382)
T PRK14291 172 GEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LR------------EPCSKCNGRGLVIKKETIKVRIPPGVDNGS 238 (382)
T ss_pred CCccCCCCCCceEEEEecceEEEEecCCCCCCceE-Ec------------cCCCCCCCCceEEeeeEEEEEeCCCCCCCC
Confidence 3567999999997642 24678999999995 32 6899999999875432
Q ss_pred eeecCCCcE------------------------------------------------Ee--eceEEEEEeCCCCCCCcEE
Q 017925 146 CRKCSGEGR------------------------------------------------IR--LKKNIKVKVPPGVSTGSIL 175 (363)
Q Consensus 146 C~~C~G~G~------------------------------------------------v~--~~~~l~V~IP~Gv~~G~~i 175 (363)
-....|+|. +. ..+.++|+||+|+++|++|
T Consensus 239 ~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i 318 (382)
T PRK14291 239 KLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKI 318 (382)
T ss_pred EEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCCEE
Confidence 122233221 00 0157899999999999999
Q ss_pred EEccCcCCCCCCCCCccEEEEEEEEecc
Q 017925 176 RVVGEGDAGPRGGPPGDLYVYLDVEEIP 203 (363)
Q Consensus 176 rl~G~G~~~~~g~~~GDL~V~i~v~~h~ 203 (363)
+|+|+|++.+.+..+|||||+|+|..+.
T Consensus 319 ~i~G~G~p~~~~~~~GDL~V~~~V~~P~ 346 (382)
T PRK14291 319 RVPGKGMPRLKGSGYGDLVVRVHIDVPK 346 (382)
T ss_pred EECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 9999999876555789999999999875
No 66
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.24 E-value=1.7e-11 Score=123.86 Aligned_cols=128 Identities=23% Similarity=0.478 Sum_probs=89.9
Q ss_pred hhhhhcCCeEEEEEeeeEeccCCCCCceeeC---------ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccE
Q 017925 70 FSESIFGAEKEFELSHLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGE 140 (363)
Q Consensus 70 lee~~~G~~~~i~~~~~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~ 140 (363)
+...+.|.... -.....|..|+|+|.... ....+|+.|+|+|.++... .+|+.|+|.|.
T Consensus 152 ~C~~C~G~G~~--~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~----------~~C~~C~G~g~ 219 (421)
T PTZ00037 152 ICANCEGHGGP--KDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPES----------KKCKNCSGKGV 219 (421)
T ss_pred cccccCCCCCC--CCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccc----------ccCCcCCCcce
Confidence 34556665532 224578999999997421 2456899999999976422 68999999998
Q ss_pred Eecee--------------eeecCCCcE-------------Ee------------------------------------e
Q 017925 141 VISEY--------------CRKCSGEGR-------------IR------------------------------------L 157 (363)
Q Consensus 141 vi~~~--------------C~~C~G~G~-------------v~------------------------------------~ 157 (363)
+.... -....|+|- +. .
T Consensus 220 v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLd 299 (421)
T PTZ00037 220 KKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLD 299 (421)
T ss_pred eeeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCC
Confidence 76432 122333321 00 0
Q ss_pred ceEEEEEeCCC--CCCCcEEEEccCcCCCCCC-CCCccEEEEEEEEec--cccccCC
Q 017925 158 KKNIKVKVPPG--VSTGSILRVVGEGDAGPRG-GPPGDLYVYLDVEEI--PGIQRDG 209 (363)
Q Consensus 158 ~~~l~V~IP~G--v~~G~~irl~G~G~~~~~g-~~~GDL~V~i~v~~h--~~f~R~G 209 (363)
.+.|.|+||+| +++|++++|+|+|++...+ ...|||||+|+|..+ ..++.+.
T Consensus 300 G~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~q 356 (421)
T PTZ00037 300 GRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEE 356 (421)
T ss_pred CCeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHH
Confidence 15799999999 9999999999999985433 457999999999988 6555443
No 67
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.94 E-value=1.6e-09 Score=104.78 Aligned_cols=81 Identities=30% Similarity=0.459 Sum_probs=68.5
Q ss_pred ccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEeccCce-EEEecCCCCCCCcEEEEccCCCCCCCCCCCCc
Q 017925 191 GDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRG 269 (363)
Q Consensus 191 GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tldG~-~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rG 269 (363)
||+++.+. .+.|+|+||++++.|+|.||++|++++| ++++. ++|+||+|+++|++++++|+|++. |
T Consensus 116 g~~~~~~~-----~~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G~~~G~~ir~~g~G~~~-------G 182 (291)
T PRK14299 116 GDLFGSVG-----RRARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPGVREGQVIRLAGKGRQG-------G 182 (291)
T ss_pred cccccccc-----CCCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCCcCCCcEEEECCCCCCC-------C
Confidence 56664432 2457899999999999999999999998 78885 789999999999999999999972 9
Q ss_pred cEEEEEEEEcCCCCC
Q 017925 270 DHLFTVKVTIPNRIS 284 (363)
Q Consensus 270 DL~V~~~V~~P~~l~ 284 (363)
||||+|+|.-+..+.
T Consensus 183 DL~v~i~v~~h~~f~ 197 (291)
T PRK14299 183 DLYLVVRLLPHPVFR 197 (291)
T ss_pred CEEEEEEEcCCCCeE
Confidence 999999998766543
No 68
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.94 E-value=1.3e-09 Score=85.46 Aligned_cols=49 Identities=43% Similarity=0.758 Sum_probs=38.2
Q ss_pred eEEEEEeCCCCCCCcEEEEccCcCCCCCCC-CCccEEEEEEEEecccccc
Q 017925 159 KNIKVKVPPGVSTGSILRVVGEGDAGPRGG-PPGDLYVYLDVEEIPGIQR 207 (363)
Q Consensus 159 ~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~-~~GDL~V~i~v~~h~~f~R 207 (363)
++++|+||+|+++|+.++++|+|++...+. ..|||||+|+|..+..++.
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~ 76 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSP 76 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSH
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCH
Confidence 578899999999999999999999765544 7999999999998876653
No 69
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.93 E-value=3.4e-09 Score=87.68 Aligned_cols=77 Identities=31% Similarity=0.638 Sum_probs=58.0
Q ss_pred CCcEEEEEEeehhhhhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcc
Q 017925 59 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 138 (363)
Q Consensus 59 g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~ 138 (363)
|-++.+..++..++.. ...+.|..|+|+|.+ +|+.|+|+|.+...+ .+.++++.+|+.|+|.
T Consensus 23 ~~~~~~~~q~~~~~~~---------~~~v~C~~C~GsG~~------~C~~C~G~G~v~~~~---~g~~q~~~~C~~C~G~ 84 (111)
T PLN03165 23 GIPVFYETQIDNAAKR---------ENTQPCFPCSGTGAQ------VCRFCVGSGNVTVEL---GGGEKEVSKCINCDGA 84 (111)
T ss_pred CCcEEEEEeeehhhhh---------ccCCCCCCCCCCCCc------CCCCCcCcCeEEEEe---CCcEEEEEECCCCCCc
Confidence 3456666565554332 345789999999983 899999999987543 2346667899999999
Q ss_pred cEEeceeeeecCCCcEEe
Q 017925 139 GEVISEYCRKCSGEGRIR 156 (363)
Q Consensus 139 G~vi~~~C~~C~G~G~v~ 156 (363)
|++ +|+.|+|.|++.
T Consensus 85 Gk~---~C~~C~G~G~~~ 99 (111)
T PLN03165 85 GSL---TCTTCQGSGIQP 99 (111)
T ss_pred cee---eCCCCCCCEEEe
Confidence 985 499999999864
No 70
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.74 E-value=2.1e-08 Score=97.67 Aligned_cols=74 Identities=18% Similarity=0.370 Sum_probs=61.3
Q ss_pred cCCcceeEEEEeceEEeecCcEEEE----eccC--c--------eEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEE
Q 017925 207 RDGIDLFSTISISYLDAIMGTVVKV----KTVE--G--------ISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHL 272 (363)
Q Consensus 207 R~G~DL~~~~~I~l~eAllG~~~~v----~tld--G--------~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~ 272 (363)
|++.||++++.|+|.||++|+..+| ++++ | .++|+||+|+++|++++++|+|+|..+. ..+||||
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~~GDl~ 193 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENG-GPNGDLW 193 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCC-CCCccEE
Confidence 4688999999999999999995544 4444 3 3578999999999999999999997543 3679999
Q ss_pred EEEEEEcCCC
Q 017925 273 FTVKVTIPNR 282 (363)
Q Consensus 273 V~~~V~~P~~ 282 (363)
|+|+|. |..
T Consensus 194 v~i~v~-ph~ 202 (306)
T PRK10266 194 LVIHIA-PHP 202 (306)
T ss_pred EEEEEc-CCC
Confidence 999998 654
No 71
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1e-07 Score=92.88 Aligned_cols=44 Identities=36% Similarity=0.540 Sum_probs=40.0
Q ss_pred eEEEEEeCCC--CCCCcEEEEccCcCCCCCCCCCccEEEEEEEEecc
Q 017925 159 KNIKVKVPPG--VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIP 203 (363)
Q Consensus 159 ~~l~V~IP~G--v~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~ 203 (363)
+.|++.++|| +.+|++++++|+|++..... .|||||.++|+.++
T Consensus 279 r~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~-~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 279 RLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP-KGDLYIKFEVKFPK 324 (337)
T ss_pred ceEEEecCCCceeChhHEEeecCCCcccccCC-CCcEEEEEEEEcCC
Confidence 7899999999 99999999999999976544 99999999999887
No 72
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.4e-06 Score=82.42 Aligned_cols=104 Identities=29% Similarity=0.453 Sum_probs=91.6
Q ss_pred eceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEE--EEeceEEeecCcEEEEecc
Q 017925 157 LKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFST--ISISYLDAIMGTVVKVKTV 234 (363)
Q Consensus 157 ~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~--~~I~l~eAllG~~~~v~tl 234 (363)
..+.+.+.+++++..|+.+....+|+..+. ..|-++++.+..++|..|.|.++||++. ..|++.+|+++....++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~ 276 (306)
T KOG0714|consen 198 RSRYLSISIKPGWKEGTKITFPEEGDEEPG-ILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPTL 276 (306)
T ss_pred ccceeEEeccCCcccccceeccccccccCC-cCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCcceeeecc
Confidence 357788999999999999999999987653 5678888899999999999999999999 9999999999999999999
Q ss_pred Cce-EEEecC-CCCCCCcEEEEccCCCCC
Q 017925 235 EGI-SELQVP-PGTQPGDVLVLAKKGAPK 261 (363)
Q Consensus 235 dG~-~~l~ip-~gtq~g~~~~l~g~G~P~ 261 (363)
++. ..+.+. .-..++...+++++|||.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 277 DGRSYSLSINKDLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred cCccccCcccccccCCCceeeecCCCCCC
Confidence 987 345554 557899999999999985
No 73
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.35 E-value=3.5e-07 Score=82.42 Aligned_cols=49 Identities=31% Similarity=0.642 Sum_probs=45.5
Q ss_pred eecCCCCCcccEEec--eeeeecCCCcEEeeceEEEEEeCCCCCCCcEEEEc
Q 017925 129 VSVCPSCGGEGEVIS--EYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVV 178 (363)
Q Consensus 129 ~~~C~~C~G~G~vi~--~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~ 178 (363)
+.+|+.|+|+|++|. ++|+.|+|.|+++.++.+.+++ .|+++|++|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 578999999999997 7899999999999999999999 999999999875
No 74
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.00 E-value=1.8e-05 Score=84.00 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=58.4
Q ss_pred CCCCcEEEEEEeehhhhhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCC
Q 017925 57 TKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 136 (363)
Q Consensus 57 ~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 136 (363)
++|.|+.+.+.|+|.+|+.|+++.|.--
T Consensus 743 RdGdDL~~~v~ISL~EALLGgtIeIpTL---------------------------------------------------- 770 (871)
T TIGR03835 743 IKNDGLHVAALVDPLVAYNGGIIDVFGP---------------------------------------------------- 770 (871)
T ss_pred EECCeEEEEEecCHHHHhcCCEEEeeCC----------------------------------------------------
Confidence 5689999999999999999987665321
Q ss_pred cccEEeceeeeecCCCcEEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEe
Q 017925 137 GEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEE 201 (363)
Q Consensus 137 G~G~vi~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~ 201 (363)
...++|+||+|+++|+++||+|+|++.. +...|||||+|.+..
T Consensus 771 ---------------------DGrVkLkIPpgTqpGqvLRIkGKGMP~~-~~~RGDLyV~f~V~~ 813 (871)
T TIGR03835 771 ---------------------NKLFNVRIPGGIKVNDQVIFKDLGLTKT-KYDKGSLIVHLYYSS 813 (871)
T ss_pred ---------------------CCCEEEeeCCCCCCCcEEEECCCCCCCC-CCCCCCEEEEEEEee
Confidence 1137899999999999999999999743 345799999998764
No 75
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.90 E-value=9.8e-06 Score=61.08 Aligned_cols=44 Identities=32% Similarity=0.900 Sum_probs=31.8
Q ss_pred eeEeccCCCCCceeeC---------ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCccc
Q 017925 85 HLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG 139 (363)
Q Consensus 85 ~~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G 139 (363)
....|+.|+|+|.... ....+|+.|+|+|+++ .. .+|+.|+|.|
T Consensus 14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~~----------~~C~~C~G~g 66 (66)
T PF00684_consen 14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-EK----------DPCKTCKGSG 66 (66)
T ss_dssp T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--TS----------SB-SSSTTSS
T ss_pred CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-CC----------CCCCCCCCcC
Confidence 3468999999998753 2567899999999987 11 8999999986
No 76
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.78 E-value=1.8e-05 Score=81.19 Aligned_cols=69 Identities=30% Similarity=0.715 Sum_probs=46.1
Q ss_pred EeccCCCCCceeeCceeeeCCCCccccEEEEeee--------CCCcceee-eecCCCCCcccEEe-ceeeeecCCCcEEe
Q 017925 87 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQ--------TPFGLFSQ-VSVCPSCGGEGEVI-SEYCRKCSGEGRIR 156 (363)
Q Consensus 87 ~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~--------~~~G~~~~-~~~C~~C~G~G~vi-~~~C~~C~G~G~v~ 156 (363)
..|+.|+|+|...- ....|+.|+|+|..-.... -..=.|.. ..+|+.|.|+|++. -+.|+.|.|.|.+.
T Consensus 3 ~~C~~C~g~G~i~v-~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~ 81 (715)
T COG1107 3 KKCPECGGKGKIVV-GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVL 81 (715)
T ss_pred ccccccCCCceEee-eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEE
Confidence 46899999887654 3467999999987632211 00112233 35899999999885 47899998888643
No 77
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00012 Score=70.19 Aligned_cols=61 Identities=34% Similarity=0.814 Sum_probs=40.1
Q ss_pred eEeccCCCCCceee---Cc----------------eeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceee
Q 017925 86 LETCEVCTGTGAKM---GS----------------KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYC 146 (363)
Q Consensus 86 ~~~C~~C~GsG~~~---g~----------------~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C 146 (363)
..+|+.|+|+|... ++ ....|..|+|+|. ..|++|+|+|. .+|
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~---------------~~C~tC~grG~---k~C 259 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGI---------------KECHTCKGRGK---KPC 259 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCc---------------ccCCcccCCCC---ccc
Confidence 56788888888421 10 2234666666664 46777777776 489
Q ss_pred eecCCCcEEeeceEEEEE
Q 017925 147 RKCSGEGRIRLKKNIKVK 164 (363)
Q Consensus 147 ~~C~G~G~v~~~~~l~V~ 164 (363)
.+|.|.|.+..--.+.|.
T Consensus 260 ~TC~gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 260 TTCSGTGSLLNYTRIVVY 277 (406)
T ss_pred ccccCccceeeeEEEEEE
Confidence 999999987665555444
No 78
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.94 E-value=0.00079 Score=55.90 Aligned_cols=52 Identities=25% Similarity=0.590 Sum_probs=38.6
Q ss_pred hhhhhcCCeEEEEEeeeEeccCCCCCceeeC------ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEec
Q 017925 70 FSESIFGAEKEFELSHLETCEVCTGTGAKMG------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS 143 (363)
Q Consensus 70 lee~~~G~~~~i~~~~~~~C~~C~GsG~~~g------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~ 143 (363)
+...+.|... ..|..|+|+|.... ....+|+.|+|+|+ ..|+.|.|+|.+..
T Consensus 43 ~C~~C~GsG~-------~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk---------------~~C~~C~G~G~~~~ 100 (111)
T PLN03165 43 PCFPCSGTGA-------QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGS---------------LTCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCCCCCC-------cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcce---------------eeCCCCCCCEEEee
Confidence 4456666554 28999999998642 13568999999996 24999999998753
No 79
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.43 E-value=0.002 Score=58.34 Aligned_cols=31 Identities=29% Similarity=0.744 Sum_probs=20.5
Q ss_pred eeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEec
Q 017925 103 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS 143 (363)
Q Consensus 103 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~ 143 (363)
..+|+.|+|+|.+++.. .+|+.|+|+|++-.
T Consensus 99 ~~~C~~C~G~G~~i~~~----------~~C~~C~G~G~v~~ 129 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQ----------RECDTCAGTGRFRP 129 (186)
T ss_pred CCcCCCCCCeeEEecCC----------CCCCCCCCccEEee
Confidence 45677777777765422 46777777777654
No 80
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.0025 Score=65.86 Aligned_cols=46 Identities=33% Similarity=0.885 Sum_probs=37.0
Q ss_pred eeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEec---------------------eeeeecCCCcEEeec
Q 017925 103 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS---------------------EYCRKCSGEGRIRLK 158 (363)
Q Consensus 103 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~---------------------~~C~~C~G~G~v~~~ 158 (363)
..+|+.|+|+|++.... ..|+.|+|+|++-. -+|+.|+|+|.|...
T Consensus 2 ~~~C~~C~g~G~i~v~~----------e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~ 68 (715)
T COG1107 2 IKKCPECGGKGKIVVGE----------EECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVY 68 (715)
T ss_pred CccccccCCCceEeeee----------eecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEE
Confidence 46899999999986543 78999999998631 159999999988753
No 81
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.016 Score=56.07 Aligned_cols=39 Identities=36% Similarity=1.017 Sum_probs=31.4
Q ss_pred eeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEec
Q 017925 84 SHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS 143 (363)
Q Consensus 84 ~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~ 143 (363)
....+|.-|+|+|. ..|++|.|+|. .+|.+|.|+|....
T Consensus 232 gt~~~C~~C~G~G~------~~C~tC~grG~---------------k~C~TC~gtgsll~ 270 (406)
T KOG2813|consen 232 GTHDLCYMCHGRGI------KECHTCKGRGK---------------KPCTTCSGTGSLLN 270 (406)
T ss_pred CccchhhhccCCCc------ccCCcccCCCC---------------cccccccCccceee
Confidence 34566777888875 57999999997 68999999999754
No 82
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=0.049 Score=52.78 Aligned_cols=69 Identities=33% Similarity=0.691 Sum_probs=47.2
Q ss_pred cEEEEEEeehhhhhcCCeEEEEEeeeEeccCCCCCceee-----CceeeeCCCCccccEEEEeeeCCCcceeeeecCCCC
Q 017925 61 DLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKM-----GSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSC 135 (363)
Q Consensus 61 di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~-----g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 135 (363)
.+.+.+ ++..++.+|.. .........|..|.|.|... .-...+|..|++.|.+.. ..|..|
T Consensus 158 ~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~------------~~c~~~ 223 (288)
T KOG0715|consen 158 RISFNV-LSDCETCFGSG-AEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR------------DNCQAC 223 (288)
T ss_pred ceEEEe-ecccccccCcC-cccccccccchhhhCcccccccccCCcceeecccccccceecc------------chHHHh
Confidence 344444 33556777766 34456678999999999322 112237999999998765 559999
Q ss_pred CcccEEec
Q 017925 136 GGEGEVIS 143 (363)
Q Consensus 136 ~G~G~vi~ 143 (363)
.|.|.+..
T Consensus 224 ~g~~~v~~ 231 (288)
T KOG0715|consen 224 SGAGQVRR 231 (288)
T ss_pred hcchhhhh
Confidence 99996554
No 83
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=89.30 E-value=3.7 Score=37.44 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=18.6
Q ss_pred cEEEEeccCceEEEecCCC-CCCCcEEEEcc
Q 017925 227 TVVKVKTVEGISELQVPPG-TQPGDVLVLAK 256 (363)
Q Consensus 227 ~~~~v~tldG~~~l~ip~g-tq~g~~~~l~g 256 (363)
+++.||-| .|.|||| ++-|.+-.|.|
T Consensus 74 ati~IPEl----~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 74 ATIRIPEL----GLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred cEEEccce----EEEECCCccCCceEEeeHh
Confidence 34555554 5789999 68898888854
No 84
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=89.28 E-value=2.2 Score=37.92 Aligned_cols=26 Identities=12% Similarity=0.454 Sum_probs=17.7
Q ss_pred cEEEEeccCceEEEecCCCC-CCCcEEEEcc
Q 017925 227 TVVKVKTVEGISELQVPPGT-QPGDVLVLAK 256 (363)
Q Consensus 227 ~~~~v~tldG~~~l~ip~gt-q~g~~~~l~g 256 (363)
+++.||-| .|.||||+ +.|.+=.|.|
T Consensus 72 a~i~IPEl----~lei~pg~~~~G~iTTVEG 98 (163)
T TIGR00340 72 ATIRIPEL----GIKIEPGPASQGYISNIEG 98 (163)
T ss_pred cEEEccce----eEEecCCCcCCceEEehHh
Confidence 34556655 57899987 6787777744
No 85
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.13 E-value=0.45 Score=45.40 Aligned_cols=51 Identities=33% Similarity=0.591 Sum_probs=29.6
Q ss_pred EeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecC
Q 017925 87 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCS 150 (363)
Q Consensus 87 ~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~ 150 (363)
..|..|.|.+. ..|..|+|+=.+... ....-...+|..|+-.|-+ +|+.|.
T Consensus 230 ~~C~~CGg~rF------lpC~~C~GS~kv~~~----~~~~~~~~rC~~CNENGLv---rCp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGARF------LPCSNCHGSCKVHEE----EEDDGGVLRCLECNENGLV---RCPVCS 280 (281)
T ss_pred CcCCCcCCcce------EecCCCCCceeeeee----ccCCCcEEECcccCCCCce---eCCccC
Confidence 46777777655 357777777665442 1122223567777777765 455553
No 86
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.17 E-value=0.97 Score=43.22 Aligned_cols=38 Identities=32% Similarity=0.814 Sum_probs=32.4
Q ss_pred eeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEec--------eeeeecCCCcEEe
Q 017925 104 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS--------EYCRKCSGEGRIR 156 (363)
Q Consensus 104 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~--------~~C~~C~G~G~v~ 156 (363)
..|..|+|.+. .+|..|+|.-++.. .+|..|+=.|.++
T Consensus 230 ~~C~~CGg~rF---------------lpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARF---------------LPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcce---------------EecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 57999999886 58999999999886 3699999888775
No 87
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=82.54 E-value=1.4 Score=50.19 Aligned_cols=66 Identities=29% Similarity=0.571 Sum_probs=44.1
Q ss_pred Eeehhhhh--------cCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcc
Q 017925 67 VLEFSESI--------FGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 138 (363)
Q Consensus 67 ~ltlee~~--------~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~ 138 (363)
+=++.+|+ .+...++.+. ...|+.|..... ...|+.|+..=.. ...|+.|+..
T Consensus 641 qR~I~kAa~~a~~~~d~~G~ieVEV~-~rkCPkCG~~t~-----~~fCP~CGs~te~-------------vy~CPsCGae 701 (1337)
T PRK14714 641 QRDVAKAAKHAPDMSDEGGVIEVEVG-RRRCPSCGTETY-----ENRCPDCGTHTEP-------------VYVCPDCGAE 701 (1337)
T ss_pred cccHHHHHHhhhhccccCCeEEEEEE-EEECCCCCCccc-----cccCcccCCcCCC-------------ceeCccCCCc
Confidence 34678888 5555566665 578999987532 2489999866311 1589999873
Q ss_pred cEEec-----eeeeecCCCc
Q 017925 139 GEVIS-----EYCRKCSGEG 153 (363)
Q Consensus 139 G~vi~-----~~C~~C~G~G 153 (363)
+.. ..|+.|...-
T Consensus 702 --v~~des~a~~CP~CGtpl 719 (1337)
T PRK14714 702 --VPPDESGRVECPRCDVEL 719 (1337)
T ss_pred --cCCCccccccCCCCCCcc
Confidence 222 3799997654
No 88
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=82.46 E-value=1.1 Score=39.16 Aligned_cols=45 Identities=31% Similarity=0.663 Sum_probs=25.4
Q ss_pred EeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccE
Q 017925 87 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGE 140 (363)
Q Consensus 87 ~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~ 140 (363)
..|..|.|.+. ..|..|+|+=.++...... ......|+.|+-.|-
T Consensus 100 ~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~~~---~~~~~rC~~Cnengl 144 (147)
T cd03031 100 GVCEGCGGARF------VPCSECNGSCKVFAENATA---AGGFLRCPECNENGL 144 (147)
T ss_pred CCCCCCCCcCe------EECCCCCCcceEEeccCcc---cccEEECCCCCcccc
Confidence 45888887765 4588888877665432100 011256666665554
No 89
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=78.95 E-value=2.5 Score=36.88 Aligned_cols=38 Identities=29% Similarity=0.818 Sum_probs=30.3
Q ss_pred eeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEec-e--------eeeecCCCcEE
Q 017925 103 MRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS-E--------YCRKCSGEGRI 155 (363)
Q Consensus 103 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~-~--------~C~~C~G~G~v 155 (363)
...|..|.|.+. .+|..|+|.-++.. + +|+.|+=.|.+
T Consensus 99 ~~~C~~Cgg~rf---------------v~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 99 GGVCEGCGGARF---------------VPCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCCcCe---------------EECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 346999999986 58999999988863 2 69999877754
No 90
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.15 E-value=1.6 Score=48.93 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=10.7
Q ss_pred EEcCC-CCCHHHHHHHHHHH
Q 017925 277 VTIPN-RISAKERELLEELA 295 (363)
Q Consensus 277 V~~P~-~l~~~q~~ll~~l~ 295 (363)
++=|. .|++..++.|.++.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L 874 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVL 874 (924)
T ss_pred EECCCCCCCHHHHHHHHHHH
Confidence 34454 47776665555544
No 91
>PRK04023 DNA polymerase II large subunit; Validated
Probab=76.40 E-value=1.8 Score=48.26 Aligned_cols=65 Identities=28% Similarity=0.562 Sum_probs=44.2
Q ss_pred ehhhhhc-CCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeee
Q 017925 69 EFSESIF-GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR 147 (363)
Q Consensus 69 tlee~~~-G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~ 147 (363)
++.+|+. +...++.+. ...|+.|.-.. ....|+.|+..-.. ...|+.|.-.. ....|+
T Consensus 609 ~i~~A~~~~g~~eVEVg-~RfCpsCG~~t-----~~frCP~CG~~Te~-------------i~fCP~CG~~~--~~y~CP 667 (1121)
T PRK04023 609 DINKAAKYKGTIEVEIG-RRKCPSCGKET-----FYRRCPFCGTHTEP-------------VYRCPRCGIEV--EEDECE 667 (1121)
T ss_pred cHHHHHhcCCceeeccc-CccCCCCCCcC-----CcccCCCCCCCCCc-------------ceeCccccCcC--CCCcCC
Confidence 5778888 666666654 36899998764 34789999876211 15799994332 246799
Q ss_pred ecCCCcE
Q 017925 148 KCSGEGR 154 (363)
Q Consensus 148 ~C~G~G~ 154 (363)
+|.-+-.
T Consensus 668 KCG~El~ 674 (1121)
T PRK04023 668 KCGREPT 674 (1121)
T ss_pred CCCCCCC
Confidence 9976643
No 92
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=75.91 E-value=13 Score=32.82 Aligned_cols=37 Identities=30% Similarity=0.611 Sum_probs=22.2
Q ss_pred eCCCCccccEE-EEeeeCC-Ccceee-eecCCCCCcccEE
Q 017925 105 ICSTCGGRGQV-MRTDQTP-FGLFSQ-VSVCPSCGGEGEV 141 (363)
Q Consensus 105 ~C~~C~G~G~~-~~~~~~~-~G~~~~-~~~C~~C~G~G~v 141 (363)
.|+.|+..|.. +....+| |+-+.. ...|++|+=+-.-
T Consensus 2 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~e 41 (160)
T smart00709 2 DCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYRNNE 41 (160)
T ss_pred cCCCCCCCCEEEEEEecCCCcceEEEEEEECCCCCCccce
Confidence 48888777763 2333343 554444 4789999765443
No 93
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.71 E-value=1.2 Score=49.84 Aligned_cols=28 Identities=29% Similarity=0.653 Sum_probs=19.5
Q ss_pred cCCCCCcccEEec---------eeeeecCCCcEEeec
Q 017925 131 VCPSCGGEGEVIS---------EYCRKCSGEGRIRLK 158 (363)
Q Consensus 131 ~C~~C~G~G~vi~---------~~C~~C~G~G~v~~~ 158 (363)
.|+.|.|.|.+.. .+|+.|+|+..-.+.
T Consensus 738 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~ 774 (924)
T TIGR00630 738 RCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRET 774 (924)
T ss_pred CCCCCccceEEEEEccCCCCcccCCCCcCCceeChHH
Confidence 3888888887762 468888887765443
No 94
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=72.89 E-value=3.9 Score=36.26 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=44.9
Q ss_pred EEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 017925 163 VKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 212 (363)
Q Consensus 163 V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL 212 (363)
+.+|.+...+..+++.+++.... ...++++..+.+++|+.|..+++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (237)
T COG2214 180 STIKAGALEGKALRLKGLLKSAR--GALGKARLKELSKRHPPFALEGDDK 227 (237)
T ss_pred ccCCcccccCceeeecccCCcCC--CCcccceeeeeccCCCCccccCCcc
Confidence 89999999999999999998765 6789999999999999999999999
No 95
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=71.50 E-value=2.6 Score=45.92 Aligned_cols=51 Identities=25% Similarity=0.569 Sum_probs=36.8
Q ss_pred eeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCC
Q 017925 85 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 152 (363)
Q Consensus 85 ~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~ 152 (363)
....|..|.- ...||.|...=.. + + ....-.|..|+-. ..+...|+.|.+.
T Consensus 434 ~~l~C~~Cg~--------v~~Cp~Cd~~lt~-H--~-----~~~~L~CH~Cg~~-~~~p~~Cp~Cgs~ 484 (730)
T COG1198 434 PLLLCRDCGY--------IAECPNCDSPLTL-H--K-----ATGQLRCHYCGYQ-EPIPQSCPECGSE 484 (730)
T ss_pred ceeecccCCC--------cccCCCCCcceEE-e--c-----CCCeeEeCCCCCC-CCCCCCCCCCCCC
Confidence 4678999973 5789999876222 1 1 1123689999877 6678899999876
No 96
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=70.08 E-value=1.4 Score=48.08 Aligned_cols=65 Identities=28% Similarity=0.591 Sum_probs=0.0
Q ss_pred hhhhhcCC--eEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeee
Q 017925 70 FSESIFGA--EKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCR 147 (363)
Q Consensus 70 lee~~~G~--~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~ 147 (363)
+.+|+.-. ..++.+- ...|+.|.-. +....|+.|+..-... ..|+.|+- .+..+.|+
T Consensus 638 i~~A~~~~~g~i~vei~-~r~Cp~Cg~~-----t~~~~Cp~CG~~T~~~-------------~~Cp~C~~--~~~~~~C~ 696 (900)
T PF03833_consen 638 IQKAAKKGKGTIEVEIG-RRRCPKCGKE-----TFYNRCPECGSHTEPV-------------YVCPDCGI--EVEEDECP 696 (900)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCCeeEEeee-cccCcccCCc-----chhhcCcccCCccccc-------------eecccccc--ccCccccc
Confidence 44555543 2344433 3679999754 3457899997654321 57999974 34457999
Q ss_pred ecCCCcEE
Q 017925 148 KCSGEGRI 155 (363)
Q Consensus 148 ~C~G~G~v 155 (363)
+|.-...-
T Consensus 697 ~C~~~~~~ 704 (900)
T PF03833_consen 697 KCGRETTS 704 (900)
T ss_dssp --------
T ss_pred cccccCcc
Confidence 99876543
No 97
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=67.72 E-value=3.4 Score=46.45 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=12.2
Q ss_pred EEcCC-CCCHHHHHHHHHHHh
Q 017925 277 VTIPN-RISAKERELLEELAS 296 (363)
Q Consensus 277 V~~P~-~l~~~q~~ll~~l~~ 296 (363)
++=|. .|+++.++.|.++..
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~ 877 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLH 877 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHH
Confidence 45665 488877666555543
No 98
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=66.63 E-value=1.5 Score=35.49 Aligned_cols=38 Identities=26% Similarity=0.590 Sum_probs=21.5
Q ss_pred eeCCCCccccEEEEeeeCCCc-ceeeeecCCCCCcccEE
Q 017925 104 RICSTCGGRGQVMRTDQTPFG-LFSQVSVCPSCGGEGEV 141 (363)
Q Consensus 104 ~~C~~C~G~G~~~~~~~~~~G-~~~~~~~C~~C~G~G~v 141 (363)
..|..|+|.|.++-..++-.. .|-....|+.|.|.|..
T Consensus 6 ~~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~s 44 (95)
T PF03589_consen 6 DSCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGYS 44 (95)
T ss_pred CCcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCCC
Confidence 457777777765544333222 22223677777777764
No 99
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=65.17 E-value=6.2 Score=43.40 Aligned_cols=32 Identities=28% Similarity=0.703 Sum_probs=16.7
Q ss_pred cCCCCCcccEEec---------eeeeecCCCcEEeeceEEEEE
Q 017925 131 VCPSCGGEGEVIS---------EYCRKCSGEGRIRLKKNIKVK 164 (363)
Q Consensus 131 ~C~~C~G~G~vi~---------~~C~~C~G~G~v~~~~~l~V~ 164 (363)
.|..|+|.|.+.. -+|..|+|+.+- .++|+|+
T Consensus 732 RCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn--~EtLev~ 772 (935)
T COG0178 732 RCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYN--RETLEVK 772 (935)
T ss_pred CCccccCCceEEEEeccCCCceeeCCCcCCcccc--cceEEEE
Confidence 3555555555432 246666665544 4556554
No 100
>PRK14873 primosome assembly protein PriA; Provisional
Probab=61.74 E-value=6.1 Score=42.79 Aligned_cols=50 Identities=20% Similarity=0.493 Sum_probs=34.6
Q ss_pred eeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCC
Q 017925 85 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 152 (363)
Q Consensus 85 ~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~ 152 (363)
....|..|. ....|+.|.+.=..-+. ...-.|..|+-. . +...|+.|.+.
T Consensus 382 p~l~C~~Cg--------~~~~C~~C~~~L~~h~~--------~~~l~Ch~CG~~-~-~p~~Cp~Cgs~ 431 (665)
T PRK14873 382 PSLACARCR--------TPARCRHCTGPLGLPSA--------GGTPRCRWCGRA-A-PDWRCPRCGSD 431 (665)
T ss_pred CeeEhhhCc--------CeeECCCCCCceeEecC--------CCeeECCCCcCC-C-cCccCCCCcCC
Confidence 356899997 35789999876332111 112679999865 2 57899999876
No 101
>PRK05978 hypothetical protein; Provisional
Probab=61.54 E-value=3.8 Score=35.86 Aligned_cols=25 Identities=36% Similarity=1.093 Sum_probs=15.6
Q ss_pred eCCCCccccEEEEeeeCCCcceeeeecCCCCC
Q 017925 105 ICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 136 (363)
Q Consensus 105 ~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 136 (363)
.||.| |.|...+ |++.+...|+.|+
T Consensus 35 rCP~C-G~G~LF~------g~Lkv~~~C~~CG 59 (148)
T PRK05978 35 RCPAC-GEGKLFR------AFLKPVDHCAACG 59 (148)
T ss_pred cCCCC-CCCcccc------cccccCCCccccC
Confidence 57777 4555433 5556667788775
No 102
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=60.94 E-value=5.1 Score=47.93 Aligned_cols=24 Identities=4% Similarity=0.015 Sum_probs=13.7
Q ss_pred ccEEEEEEEEcCCC-CCHHHHHHHHHHH
Q 017925 269 GDHLFTVKVTIPNR-ISAKERELLEELA 295 (363)
Q Consensus 269 GDL~V~~~V~~P~~-l~~~q~~ll~~l~ 295 (363)
..||| .+-|.. |.+...+.|-+++
T Consensus 1721 ~~lyi---lDEPt~GLh~~d~~~Ll~~l 1745 (1809)
T PRK00635 1721 PTLFL---LDEIATSLDNQQKSALLVQL 1745 (1809)
T ss_pred CcEEE---EcCCCCCCCHHHHHHHHHHH
Confidence 35654 456763 7776665555443
No 103
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=59.92 E-value=6 Score=44.54 Aligned_cols=28 Identities=29% Similarity=0.644 Sum_probs=19.5
Q ss_pred cCCCCCcccEEec---------eeeeecCCCcEEeec
Q 017925 131 VCPSCGGEGEVIS---------EYCRKCSGEGRIRLK 158 (363)
Q Consensus 131 ~C~~C~G~G~vi~---------~~C~~C~G~G~v~~~ 158 (363)
.|+.|.|.|.+.. .+|+.|+|...-.+.
T Consensus 740 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~ 776 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRET 776 (943)
T ss_pred CCCcccccceEEEEeccCCCccccCccccCccccccc
Confidence 4888888877753 368888887765443
No 104
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.67 E-value=6.1 Score=41.33 Aligned_cols=51 Identities=24% Similarity=0.498 Sum_probs=33.1
Q ss_pred eeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCC
Q 017925 85 HLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 152 (363)
Q Consensus 85 ~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~ 152 (363)
....|..|.- ...|+.|.+.=.. +.. ...-.|..|+ .-..+...|+.|.+.
T Consensus 212 ~~~~C~~Cg~--------~~~C~~C~~~l~~-h~~-------~~~l~Ch~Cg-~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 212 KNLLCRSCGY--------ILCCPNCDVSLTY-HKK-------EGKLRCHYCG-YQEPIPKTCPQCGSE 262 (505)
T ss_pred CeeEhhhCcC--------ccCCCCCCCceEE-ecC-------CCeEEcCCCc-CcCCCCCCCCCCCCC
Confidence 3468999974 4789999865222 111 1126899996 333456789999775
No 105
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=55.89 E-value=11 Score=36.83 Aligned_cols=27 Identities=22% Similarity=0.559 Sum_probs=14.4
Q ss_pred eEeccCCCCCc--------eeeCceeeeCCCCccc
Q 017925 86 LETCEVCTGTG--------AKMGSKMRICSTCGGR 112 (363)
Q Consensus 86 ~~~C~~C~GsG--------~~~g~~~~~C~~C~G~ 112 (363)
...|+.|.+.= ...|...-.|+.|.-.
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~te 221 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESE 221 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCc
Confidence 45677776541 1234455566666544
No 106
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=53.89 E-value=19 Score=25.51 Aligned_cols=37 Identities=35% Similarity=0.803 Sum_probs=18.2
Q ss_pred eeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEE
Q 017925 104 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEV 141 (363)
Q Consensus 104 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~v 141 (363)
..||.|+|....++......+. .-...|..|+..|..
T Consensus 2 kPCPfCGg~~~~~~~~~~~~~~-~~~~~C~~Cga~~~~ 38 (53)
T TIGR03655 2 KPCPFCGGADVYLRRGFDPLDL-SHYFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCCcceeeEeccCCCCC-EEEEECCCCCCCccc
Confidence 3588888877744321111111 111267777665543
No 107
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=53.63 E-value=76 Score=28.06 Aligned_cols=26 Identities=19% Similarity=0.549 Sum_probs=18.7
Q ss_pred cEEEEeccCceEEEecCCCCCCCcEEEEcc
Q 017925 227 TVVKVKTVEGISELQVPPGTQPGDVLVLAK 256 (363)
Q Consensus 227 ~~~~v~tldG~~~l~ip~gtq~g~~~~l~g 256 (363)
+++.||-| .+.||||++-|.+-.|.|
T Consensus 75 a~i~IPEl----~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 75 ATISIPEL----DLEIPPGPLGGFITTVEG 100 (160)
T ss_pred cEEEeeee----eEEecCCCCCcEEEehHH
Confidence 34556554 578899988888888855
No 108
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=52.26 E-value=6.9 Score=32.40 Aligned_cols=24 Identities=21% Similarity=0.563 Sum_probs=11.5
Q ss_pred eEeccCCCCCceeeCceeeeCCCC
Q 017925 86 LETCEVCTGTGAKMGSKMRICSTC 109 (363)
Q Consensus 86 ~~~C~~C~GsG~~~g~~~~~C~~C 109 (363)
..+|+.|.-.-+--+..+.+||.|
T Consensus 9 KR~Cp~CG~kFYDLnk~PivCP~C 32 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNKDPIVCPKC 32 (108)
T ss_pred cccCCCCcchhccCCCCCccCCCC
Confidence 345555544444334444455555
No 109
>PRK05580 primosome assembly protein PriA; Validated
Probab=52.12 E-value=7.9 Score=42.03 Aligned_cols=50 Identities=22% Similarity=0.554 Sum_probs=33.2
Q ss_pred eEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCC
Q 017925 86 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 152 (363)
Q Consensus 86 ~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~ 152 (363)
...|..|.- ...|+.|.+. ...+.. ...-.|..|+-+ ..+...|+.|.+.
T Consensus 381 ~~~C~~Cg~--------~~~C~~C~~~-l~~h~~-------~~~l~Ch~Cg~~-~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 381 FLLCRDCGW--------VAECPHCDAS-LTLHRF-------QRRLRCHHCGYQ-EPIPKACPECGST 430 (679)
T ss_pred ceEhhhCcC--------ccCCCCCCCc-eeEECC-------CCeEECCCCcCC-CCCCCCCCCCcCC
Confidence 678999974 4689999874 222211 122579999744 4456789999775
No 110
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=51.88 E-value=23 Score=26.08 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhcCC
Q 017925 274 TVKVTIPNRISAKERELLEELASLRNT 300 (363)
Q Consensus 274 ~~~V~~P~~l~~~q~~ll~~l~~~~~~ 300 (363)
..+..||..||++||..+-.++...+=
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL 43 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGL 43 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCC
Confidence 567889999999999999999986653
No 111
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=51.37 E-value=5.5 Score=37.50 Aligned_cols=14 Identities=43% Similarity=1.004 Sum_probs=9.5
Q ss_pred eeCCCCccccEEEE
Q 017925 104 RICSTCGGRGQVMR 117 (363)
Q Consensus 104 ~~C~~C~G~G~~~~ 117 (363)
.+||+|+|+|++-+
T Consensus 39 vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 39 VTCPTCQGTGRIPR 52 (238)
T ss_pred CcCCCCcCCccCCc
Confidence 46777777777644
No 112
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=51.29 E-value=7 Score=26.86 Aligned_cols=13 Identities=38% Similarity=0.797 Sum_probs=10.0
Q ss_pred cchhhhhhhhhcC
Q 017925 351 VANGALKWLKENL 363 (363)
Q Consensus 351 ~~~~~~~~~~~~~ 363 (363)
-.+||+|||..|+
T Consensus 36 te~garrwl~r~~ 48 (49)
T PF07151_consen 36 TESGARRWLARNT 48 (49)
T ss_pred cchhhhHHHhhcC
Confidence 3578999998763
No 113
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=47.11 E-value=8.7 Score=41.44 Aligned_cols=49 Identities=31% Similarity=0.649 Sum_probs=31.2
Q ss_pred EeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCC
Q 017925 87 ETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 152 (363)
Q Consensus 87 ~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~ 152 (363)
..|+.|+-. .....+-|+.|+..-. ...|+.|+-.=..-...|+.|.-.
T Consensus 2 ~~Cp~Cg~~---n~~~akFC~~CG~~l~--------------~~~Cp~CG~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFE---NPNNNRFCQKCGTSLT--------------HKPCPQCGTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCc---CCCCCccccccCCCCC--------------CCcCCCCCCCCCcccccccccCCc
Confidence 579999643 2233467999944321 157999976633345679999654
No 114
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.31 E-value=23 Score=36.04 Aligned_cols=83 Identities=19% Similarity=0.178 Sum_probs=61.0
Q ss_pred EEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEeccCceEEEecCCCCCCCcEE--EEccCCCCCCCCCCCCcc
Q 017925 193 LYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVL--VLAKKGAPKLNKPSIRGD 270 (363)
Q Consensus 193 L~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tldG~~~l~ip~gtq~g~~~--~l~g~G~P~~~~~~~rGD 270 (363)
+|+..+++++..|.-.+--++|...-.+.+-=.|.-..-++.++...|-|+.-|+-|.++ .|-.+|||-.+. +..++
T Consensus 371 kve~~ev~edda~ysKkckvfykKdKEf~dkGvgtl~lkp~~~~k~qlLvradtnlGnilLN~Ll~kgMkctr~-gknnv 449 (487)
T KOG2724|consen 371 KVETVEVQEDDAVYSKKCKVFYKKDKEFTDKGVGTLHLKPNDRGKFQLLVRADTNLGNILLNSLLNKGMKCTRV-GKNNV 449 (487)
T ss_pred eeEeecccCccchhccccceEEEecccccccccceeecccccccceeeeehhccchhHHHHHHhhcCCCcceec-cCCce
Confidence 688888888887777777777776666666555544433455577789999999999998 488999997654 35678
Q ss_pred EEEEEE
Q 017925 271 HLFTVK 276 (363)
Q Consensus 271 L~V~~~ 276 (363)
|||++-
T Consensus 450 lIvcvp 455 (487)
T KOG2724|consen 450 LIVCVP 455 (487)
T ss_pred EEEEeC
Confidence 887754
No 115
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=44.79 E-value=32 Score=30.45 Aligned_cols=33 Identities=24% Similarity=0.571 Sum_probs=18.0
Q ss_pred eeCCCCccccEEE-EeeeC-CCcceeee-ecCCCCC
Q 017925 104 RICSTCGGRGQVM-RTDQT-PFGLFSQV-SVCPSCG 136 (363)
Q Consensus 104 ~~C~~C~G~G~~~-~~~~~-~~G~~~~~-~~C~~C~ 136 (363)
..|+.|+..|... ....+ .|+.+..+ ..|++|+
T Consensus 2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CG 37 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCG 37 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT-
T ss_pred CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCC
Confidence 4688888888642 22333 35554444 6899996
No 116
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=44.72 E-value=12 Score=41.18 Aligned_cols=36 Identities=22% Similarity=0.476 Sum_probs=23.2
Q ss_pred eeCCCCccccEEEEeeeCCCcceeee-ecCCCCCcccEEec
Q 017925 104 RICSTCGGRGQVMRTDQTPFGLFSQV-SVCPSCGGEGEVIS 143 (363)
Q Consensus 104 ~~C~~C~G~G~~~~~~~~~~G~~~~~-~~C~~C~G~G~vi~ 143 (363)
-.|..|.|.|.+.... .++-.+ .+|+.|+|+-+--+
T Consensus 731 GRCe~C~GdG~ikIeM----~FLpdVyv~CevC~GkRYn~E 767 (935)
T COG0178 731 GRCEACQGDGVIKIEM----HFLPDVYVPCEVCHGKRYNRE 767 (935)
T ss_pred cCCccccCCceEEEEe----ccCCCceeeCCCcCCcccccc
Confidence 4688888888764432 222233 78999999866433
No 117
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=44.11 E-value=23 Score=22.86 Aligned_cols=12 Identities=58% Similarity=1.317 Sum_probs=6.6
Q ss_pred eeCCCCccccEE
Q 017925 104 RICSTCGGRGQV 115 (363)
Q Consensus 104 ~~C~~C~G~G~~ 115 (363)
..|+.|++.+.+
T Consensus 4 ~~C~~C~~~~i~ 15 (33)
T PF08792_consen 4 KKCSKCGGNGIV 15 (33)
T ss_pred eEcCCCCCCeEE
Confidence 445566665544
No 118
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=43.54 E-value=34 Score=27.12 Aligned_cols=42 Identities=29% Similarity=0.482 Sum_probs=29.3
Q ss_pred cCCCCCCCCCCCCc--cEEEEEEEEcCC-CCCHHHHHHHHHHHhh
Q 017925 256 KKGAPKLNKPSIRG--DHLFTVKVTIPN-RISAKERELLEELASL 297 (363)
Q Consensus 256 g~G~P~~~~~~~rG--DL~V~~~V~~P~-~l~~~q~~ll~~l~~~ 297 (363)
..|+|.+--....| +.+.-|+|+.|. +|++.|++-|+.|.+.
T Consensus 45 ~~G~PDl~~~~~~~~~~~~~~iEvK~p~~~ls~~Q~~~~~~l~~~ 89 (100)
T PF08774_consen 45 RSGFPDLILWRPRGKRDIFLFIEVKGPGDRLSPNQKEWIDKLREA 89 (100)
T ss_pred CCCCCcEEEEecCCCccEEEEEEEcCCCCCcCHHHHHHHHHHHHC
Confidence 36677542111123 357788888995 7999999999999875
No 119
>PRK14051 negative regulator GrlR; Provisional
Probab=43.44 E-value=65 Score=26.66 Aligned_cols=70 Identities=17% Similarity=0.090 Sum_probs=42.2
Q ss_pred ccEEEEEEEEeccccccCCcceeEEEEec--eEEeecCcEEEEeccCceEEEecCCCCCCCcEEEEccCCCCC
Q 017925 191 GDLYVYLDVEEIPGIQRDGIDLFSTISIS--YLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPK 261 (363)
Q Consensus 191 GDL~V~i~v~~h~~f~R~G~DL~~~~~I~--l~eAllG~~~~v~tldG~~~l~ip~gtq~g~~~~l~g~G~P~ 261 (363)
-||++.++-..|+.-.--+-+--+.+.|| +.+.-.+.++. -+..|..+|.|..-.+-=..+.|++-|||.
T Consensus 48 ~~iilhvhR~n~ei~SVf~~eqdy~L~i~kk~~sn~~~~~l~-~HV~~Nekl~vdv~akFI~~LvI~~~~~~~ 119 (123)
T PRK14051 48 EDIILHVHRYNYEIPSVLNIEQDYQLVIPKKVLSNDNNLTLH-CHVRGNEKLFVDVYAKFIEPLVIKNTGMPQ 119 (123)
T ss_pred ceeEEEEEecccccccccCccccEEEecchhheeCCCCeEEE-EEEcCCcEEEEEEeeeeeeeeEEccCCCcc
Confidence 56777776665554443333334555666 55544444443 244555566666665666788999999995
No 120
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=42.87 E-value=9.6 Score=35.89 Aligned_cols=14 Identities=36% Similarity=1.044 Sum_probs=11.8
Q ss_pred ecCCCCCcccEEec
Q 017925 130 SVCPSCGGEGEVIS 143 (363)
Q Consensus 130 ~~C~~C~G~G~vi~ 143 (363)
.+||+|+|+|++.+
T Consensus 39 vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 39 VTCPTCQGTGRIPR 52 (238)
T ss_pred CcCCCCcCCccCCc
Confidence 68999999998865
No 121
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=41.86 E-value=39 Score=24.80 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=23.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhcCC
Q 017925 274 TVKVTIPNRISAKERELLEELASLRNT 300 (363)
Q Consensus 274 ~~~V~~P~~l~~~q~~ll~~l~~~~~~ 300 (363)
.-..+||..||+.+|.++-++|...+=
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL 42 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGL 42 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCC
Confidence 456789999999999999999986553
No 122
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=41.43 E-value=14 Score=31.49 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=13.4
Q ss_pred eEeccCCCCCceeeCceeeeCCCCc
Q 017925 86 LETCEVCTGTGAKMGSKMRICSTCG 110 (363)
Q Consensus 86 ~~~C~~C~GsG~~~g~~~~~C~~C~ 110 (363)
..+|+.|.-.-+--+..+.+||.|+
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg 33 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTG 33 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcC
Confidence 3456666554444444555566653
No 123
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=41.29 E-value=36 Score=24.89 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhhcCC
Q 017925 275 VKVTIPNRISAKERELLEELASLRNT 300 (363)
Q Consensus 275 ~~V~~P~~l~~~q~~ll~~l~~~~~~ 300 (363)
-.+.||..|++.||..+-++|+..+=
T Consensus 18 ~~l~F~p~ls~~eR~~vH~lA~~~gL 43 (60)
T cd02641 18 TELEFPPTLSSHDRLLVHELAEELGL 43 (60)
T ss_pred CcEECCCCCCHHHHHHHHHHHHHcCC
Confidence 35789999999999999999987653
No 124
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=39.87 E-value=86 Score=26.09 Aligned_cols=10 Identities=20% Similarity=0.507 Sum_probs=5.4
Q ss_pred eeeEeccCCC
Q 017925 84 SHLETCEVCT 93 (363)
Q Consensus 84 ~~~~~C~~C~ 93 (363)
+....|..|.
T Consensus 69 p~~~~C~~Cg 78 (117)
T PRK00564 69 KVELECKDCS 78 (117)
T ss_pred CCEEEhhhCC
Confidence 3445566665
No 125
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=39.70 E-value=42 Score=24.65 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhhcCC
Q 017925 274 TVKVTIPNRISAKERELLEELASLRNT 300 (363)
Q Consensus 274 ~~~V~~P~~l~~~q~~ll~~l~~~~~~ 300 (363)
.-.+.||..||+.+|.++-++|...+=
T Consensus 17 ~~~l~f~p~lt~~eR~~vH~~a~~~gL 43 (60)
T cd02640 17 IRDMVFSPEFSKEERALIHQIAQKYGL 43 (60)
T ss_pred cceEEcCCCCCHHHHHHHHHHHHHcCC
Confidence 456789999999999999999986653
No 126
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=39.69 E-value=29 Score=34.02 Aligned_cols=26 Identities=23% Similarity=0.589 Sum_probs=13.9
Q ss_pred EeccCCCCCc---------eeeCceeeeCCCCccc
Q 017925 87 ETCEVCTGTG---------AKMGSKMRICSTCGGR 112 (363)
Q Consensus 87 ~~C~~C~GsG---------~~~g~~~~~C~~C~G~ 112 (363)
..|+.|.+.= .+.|...-.|+.|.-.
T Consensus 185 ~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~te 219 (305)
T TIGR01562 185 TLCPACGSPPVASMVRQGGKETGLRYLSCSLCATE 219 (305)
T ss_pred CcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCc
Confidence 4677775431 1234455566666544
No 127
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=38.36 E-value=11 Score=45.10 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=19.1
Q ss_pred cCCCCCcccEEec---------eeeeecCCCcEEeec
Q 017925 131 VCPSCGGEGEVIS---------EYCRKCSGEGRIRLK 158 (363)
Q Consensus 131 ~C~~C~G~G~vi~---------~~C~~C~G~G~v~~~ 158 (363)
.|+.|.|.|.+.. .+|..|+|+.+-.+.
T Consensus 1609 rC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~ 1645 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLA 1645 (1809)
T ss_pred CCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHH
Confidence 4888888887642 258888887765443
No 128
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=37.30 E-value=1.5e+02 Score=27.28 Aligned_cols=85 Identities=24% Similarity=0.291 Sum_probs=58.4
Q ss_pred cCCcceeEEEEeceEEeecCcEEEEeccCceEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHH
Q 017925 207 RDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAK 286 (363)
Q Consensus 207 R~G~DL~~~~~I~l~eAllG~~~~v~tldG~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~ 286 (363)
|--.||.+++..+=.|-.-|+++.|.-..|..+|++|+ |+.+..+..-+-.. .|--||-=+-.|--.=--.-.+.
T Consensus 113 ~lrtdls~tlfl~DPedYdGGeLVv~dtYg~h~VklPA----GdLVlypStSlH~V-tPVTRg~R~asffW~qslir~d~ 187 (229)
T COG3128 113 RLRTDLSCTLFLSDPEDYDGGELVVNDTYGNHRVKLPA----GDLVLYPSTSLHEV-TPVTRGERFASFFWIQSLIRDDK 187 (229)
T ss_pred eeEeeeeeeeecCCccccCCceEEEeccccceEEeccC----CCEEEcccccceec-cccccCceEEEeeehHHHhhhhH
Confidence 44568889988888899999999999999988899998 67777777766544 23346655443321111112567
Q ss_pred HHHHHHHHHh
Q 017925 287 ERELLEELAS 296 (363)
Q Consensus 287 q~~ll~~l~~ 296 (363)
+|.+|-++-.
T Consensus 188 ~r~~l~e~d~ 197 (229)
T COG3128 188 KRALLFELDK 197 (229)
T ss_pred HHHHHHHHHH
Confidence 7777777653
No 129
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=37.12 E-value=21 Score=36.43 Aligned_cols=14 Identities=50% Similarity=1.163 Sum_probs=9.9
Q ss_pred ecCCCCCcccEEec
Q 017925 130 SVCPSCGGEGEVIS 143 (363)
Q Consensus 130 ~~C~~C~G~G~vi~ 143 (363)
.+||.|+|+|.+.+
T Consensus 391 ~~Cp~C~G~G~v~s 404 (414)
T TIGR00757 391 TVCPHCSGTGIVKT 404 (414)
T ss_pred CCCCCCcCeeEEcc
Confidence 56777777777653
No 130
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=36.73 E-value=50 Score=27.87 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=15.3
Q ss_pred ceEEEEEeCCCCCCCcEEEEc
Q 017925 158 KKNIKVKVPPGVSTGSILRVV 178 (363)
Q Consensus 158 ~~~l~V~IP~Gv~~G~~irl~ 178 (363)
...+++.-+.+++.||.+.+.
T Consensus 41 ~~~~~~~~~~~~~~GD~V~v~ 61 (135)
T PF04246_consen 41 PITFRAPNPIGAKVGDRVEVE 61 (135)
T ss_pred cEEEEecCCCCCCCCCEEEEE
Confidence 356667777788888887775
No 131
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=36.25 E-value=1.9e+02 Score=26.46 Aligned_cols=10 Identities=20% Similarity=0.620 Sum_probs=5.5
Q ss_pred eeeEeccCCC
Q 017925 84 SHLETCEVCT 93 (363)
Q Consensus 84 ~~~~~C~~C~ 93 (363)
...++|..|+
T Consensus 96 ~~yV~C~~C~ 105 (201)
T PRK12336 96 DEYVICSECG 105 (201)
T ss_pred HheEECCCCC
Confidence 3455666655
No 132
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=35.41 E-value=25 Score=23.48 Aligned_cols=8 Identities=88% Similarity=2.075 Sum_probs=4.9
Q ss_pred ecCCCCCc
Q 017925 130 SVCPSCGG 137 (363)
Q Consensus 130 ~~C~~C~G 137 (363)
..|+.|+|
T Consensus 20 d~C~~C~G 27 (41)
T PF13453_consen 20 DVCPSCGG 27 (41)
T ss_pred EECCCCCe
Confidence 55666665
No 133
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=32.63 E-value=46 Score=29.31 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=19.0
Q ss_pred eCCCCcccc-EEEEeeeCCCcceee-eecCCCCCc
Q 017925 105 ICSTCGGRG-QVMRTDQTPFGLFSQ-VSVCPSCGG 137 (363)
Q Consensus 105 ~C~~C~G~G-~~~~~~~~~~G~~~~-~~~C~~C~G 137 (363)
.||.|...- .++...-+..|.... ...|+.|+.
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~ 36 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGK 36 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCC
Confidence 488887765 444444455554433 366777764
No 134
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=32.62 E-value=50 Score=23.86 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=18.3
Q ss_pred CCccEEEEEEEEcCCC--CCHHHHHH
Q 017925 267 IRGDHLFTVKVTIPNR--ISAKEREL 290 (363)
Q Consensus 267 ~rGDL~V~~~V~~P~~--l~~~q~~l 290 (363)
..||+-|-|+|.+|+- ||.++-+.
T Consensus 26 k~gDiTv~f~v~LPEiFtls~~eYea 51 (54)
T PF12991_consen 26 KNGDITVAFRVELPEIFTLSEAEYEA 51 (54)
T ss_pred cCCCEEEEEEecCCeeEEechhHhHH
Confidence 4599999999999995 55555443
No 135
>PRK14873 primosome assembly protein PriA; Provisional
Probab=32.13 E-value=39 Score=36.72 Aligned_cols=41 Identities=27% Similarity=0.575 Sum_probs=28.0
Q ss_pred eeEeccCCCCCceeeC-ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCccc
Q 017925 85 HLETCEVCTGTGAKMG-SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG 139 (363)
Q Consensus 85 ~~~~C~~C~GsG~~~g-~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G 139 (363)
....|++|++.=.... .....|+.|+-.= ....|+.|++.-
T Consensus 391 ~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~--------------~p~~Cp~Cgs~~ 432 (665)
T PRK14873 391 TPARCRHCTGPLGLPSAGGTPRCRWCGRAA--------------PDWRCPRCGSDR 432 (665)
T ss_pred CeeECCCCCCceeEecCCCeeECCCCcCCC--------------cCccCCCCcCCc
Confidence 4578999998755433 3467899996321 116899998763
No 136
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=31.83 E-value=38 Score=29.54 Aligned_cols=15 Identities=33% Similarity=0.955 Sum_probs=7.8
Q ss_pred ceeeCceeeeCCCCc
Q 017925 96 GAKMGSKMRICSTCG 110 (363)
Q Consensus 96 G~~~g~~~~~C~~C~ 110 (363)
|-+.|.-.-.|..|+
T Consensus 105 GE~~g~G~l~C~~Cg 119 (146)
T PF07295_consen 105 GEVVGPGTLVCENCG 119 (146)
T ss_pred CcEecCceEecccCC
Confidence 444444455666664
No 137
>PF14353 CpXC: CpXC protein
Probab=31.59 E-value=32 Score=28.78 Aligned_cols=11 Identities=45% Similarity=0.957 Sum_probs=7.9
Q ss_pred ecCCCCCcccE
Q 017925 130 SVCPSCGGEGE 140 (363)
Q Consensus 130 ~~C~~C~G~G~ 140 (363)
.+||.|+....
T Consensus 39 ~~CP~Cg~~~~ 49 (128)
T PF14353_consen 39 FTCPSCGHKFR 49 (128)
T ss_pred EECCCCCCcee
Confidence 67888876665
No 138
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=30.70 E-value=66 Score=24.05 Aligned_cols=7 Identities=43% Similarity=1.360 Sum_probs=4.6
Q ss_pred ecCCCCC
Q 017925 130 SVCPSCG 136 (363)
Q Consensus 130 ~~C~~C~ 136 (363)
.+|+.|+
T Consensus 37 v~C~~CG 43 (64)
T PF09855_consen 37 VSCTNCG 43 (64)
T ss_pred EECCCCC
Confidence 5677774
No 139
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=29.97 E-value=73 Score=26.35 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=5.9
Q ss_pred eeeEeccCCCC
Q 017925 84 SHLETCEVCTG 94 (363)
Q Consensus 84 ~~~~~C~~C~G 94 (363)
+....|..|.-
T Consensus 68 p~~~~C~~Cg~ 78 (113)
T PRK12380 68 PAQAWCWDCSQ 78 (113)
T ss_pred CcEEEcccCCC
Confidence 34455666653
No 140
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=29.91 E-value=55 Score=36.84 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=13.2
Q ss_pred ehhhhhcCC-eEEEEEeeeEeccCC
Q 017925 69 EFSESIFGA-EKEFELSHLETCEVC 92 (363)
Q Consensus 69 tlee~~~G~-~~~i~~~~~~~C~~C 92 (363)
++.+|+... ..++.+.. ..|+.|
T Consensus 608 ~i~~A~~~g~~i~vev~~-RKCPkC 631 (1095)
T TIGR00354 608 DIKNAINYTKEIEVEIAI-RKCPQC 631 (1095)
T ss_pred hHHHHhccCCeeEEEEEE-EECCCC
Confidence 477888766 55555542 344444
No 141
>PF11983 DUF3484: Domain of unknown function (DUF3484); InterPro: IPR021873 FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains []. This C-terminal domain is found in FtsA from Firmicutes (Gram-positive bacteria). It is typically between 65 to 81 amino acids in length.
Probab=29.72 E-value=56 Score=25.06 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=16.2
Q ss_pred CCCCCCCchhHHHHHhhhcc
Q 017925 332 EEPEDQNDPWKKLKDFAGSV 351 (363)
Q Consensus 332 ~~~~~~~~~~~~l~~~~~~~ 351 (363)
+.++..+++.+|+|++||+.
T Consensus 52 ~~~e~k~kltdRvR~~fgsm 71 (73)
T PF11983_consen 52 EPSEPKEKLTDRVRGFFGSM 71 (73)
T ss_pred cccccCCcHHHHHHHHHhhh
Confidence 34566779999999999874
No 142
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=29.47 E-value=71 Score=21.36 Aligned_cols=32 Identities=31% Similarity=0.612 Sum_probs=16.2
Q ss_pred eCCCCccccEEEEeeeCCCc--ceeeeecCCCCC
Q 017925 105 ICSTCGGRGQVMRTDQTPFG--LFSQVSVCPSCG 136 (363)
Q Consensus 105 ~C~~C~G~G~~~~~~~~~~G--~~~~~~~C~~C~ 136 (363)
.|+.|+....+....|+-.. .+...-.|..|+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~ 35 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCG 35 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCC
Confidence 47777766665443332211 222335676664
No 143
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=29.41 E-value=83 Score=24.03 Aligned_cols=50 Identities=28% Similarity=0.773 Sum_probs=23.8
Q ss_pred eccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEec------eeeeecCC
Q 017925 88 TCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS------EYCRKCSG 151 (363)
Q Consensus 88 ~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~------~~C~~C~G 151 (363)
.|+.|+-. .......-.|..|+.. |.....||.|+-.=++.+ --|..|+|
T Consensus 3 ~CP~C~~~-L~~~~~~~~C~~C~~~-------------~~~~a~CPdC~~~Le~LkACGAvdYFC~~c~g 58 (70)
T PF07191_consen 3 TCPKCQQE-LEWQGGHYHCEACQKD-------------YKKEAFCPDCGQPLEVLKACGAVDYFCNHCHG 58 (70)
T ss_dssp B-SSS-SB-EEEETTEEEETTT--E-------------EEEEEE-TTT-SB-EEEEETTEEEEE-TTTT-
T ss_pred cCCCCCCc-cEEeCCEEECcccccc-------------ceecccCCCcccHHHHHHHhcccceeeccCCc
Confidence 57777765 3333345678888642 333477888876655543 23666655
No 144
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=29.10 E-value=46 Score=21.83 Aligned_cols=7 Identities=57% Similarity=1.630 Sum_probs=4.1
Q ss_pred ecCCCCC
Q 017925 130 SVCPSCG 136 (363)
Q Consensus 130 ~~C~~C~ 136 (363)
..|+.|+
T Consensus 26 vrC~~C~ 32 (37)
T PF13719_consen 26 VRCPKCG 32 (37)
T ss_pred EECCCCC
Confidence 5566664
No 145
>PHA01735 hypothetical protein
Probab=28.54 E-value=25 Score=26.71 Aligned_cols=10 Identities=50% Similarity=0.920 Sum_probs=8.4
Q ss_pred hhhhhhhhhc
Q 017925 353 NGALKWLKEN 362 (363)
Q Consensus 353 ~~~~~~~~~~ 362 (363)
+-|.+|||+|
T Consensus 36 ~AA~d~Lk~N 45 (76)
T PHA01735 36 RAACDWLKSN 45 (76)
T ss_pred HHHHHHHHHC
Confidence 4489999998
No 146
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=28.28 E-value=59 Score=21.58 Aligned_cols=32 Identities=31% Similarity=0.564 Sum_probs=15.7
Q ss_pred eCCCCccccEEEEeeeCCCc--ceeeeecCCCCC
Q 017925 105 ICSTCGGRGQVMRTDQTPFG--LFSQVSVCPSCG 136 (363)
Q Consensus 105 ~C~~C~G~G~~~~~~~~~~G--~~~~~~~C~~C~ 136 (363)
.||.|+....+....|+-.. .+.....|..|+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~ 35 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCG 35 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSSSSEEEEEESSST
T ss_pred CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCC
Confidence 47888777766554443222 233335677774
No 147
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.09 E-value=17 Score=30.62 Aligned_cols=25 Identities=40% Similarity=1.163 Sum_probs=13.6
Q ss_pred eCCCCccccEEEEeeeCCCcceeeeecCCCCC
Q 017925 105 ICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 136 (363)
Q Consensus 105 ~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 136 (363)
.||.| |.|+..+ |+......|..|+
T Consensus 23 rCP~C-GeGrLF~------gFLK~~p~C~aCG 47 (126)
T COG5349 23 RCPRC-GEGRLFR------GFLKVVPACEACG 47 (126)
T ss_pred CCCCC-CCchhhh------hhcccCchhhhcc
Confidence 57777 5555432 4444445666663
No 148
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=27.68 E-value=44 Score=27.39 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=5.4
Q ss_pred eCCCCccccEE
Q 017925 105 ICSTCGGRGQV 115 (363)
Q Consensus 105 ~C~~C~G~G~~ 115 (363)
.|.-|.++|+.
T Consensus 37 aCeiC~~~GY~ 47 (102)
T PF10080_consen 37 ACEICGPKGYY 47 (102)
T ss_pred eccccCCCceE
Confidence 45555555544
No 149
>PF03682 UPF0158: Uncharacterised protein family (UPF0158); InterPro: IPR005361 This is a small family of hypothetical bacterial proteins of unknown function.
Probab=27.65 E-value=85 Score=27.77 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=17.9
Q ss_pred EEcCCCCCHHHHHHHHHHHhh
Q 017925 277 VTIPNRISAKERELLEELASL 297 (363)
Q Consensus 277 V~~P~~l~~~q~~ll~~l~~~ 297 (363)
+.+|..-+.+...++++|+..
T Consensus 60 i~iP~~~~~~~~~iMe~Fv~~ 80 (163)
T PF03682_consen 60 IRIPPLDSIEEYRIMEDFVEE 80 (163)
T ss_pred EeCCCCchHHHHHHHHHHHHH
Confidence 468888888999999999975
No 150
>PRK11712 ribonuclease G; Provisional
Probab=27.12 E-value=32 Score=35.97 Aligned_cols=14 Identities=43% Similarity=1.082 Sum_probs=9.7
Q ss_pred ecCCCCCcccEEec
Q 017925 130 SVCPSCGGEGEVIS 143 (363)
Q Consensus 130 ~~C~~C~G~G~vi~ 143 (363)
.+||.|+|+|.+.+
T Consensus 403 ~~Cp~C~G~G~v~s 416 (489)
T PRK11712 403 GECPTCHGRGTVKT 416 (489)
T ss_pred CCCCCCCCCCCcCC
Confidence 56777777777653
No 151
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=26.97 E-value=47 Score=19.97 Aligned_cols=7 Identities=57% Similarity=1.592 Sum_probs=4.1
Q ss_pred ecCCCCC
Q 017925 130 SVCPSCG 136 (363)
Q Consensus 130 ~~C~~C~ 136 (363)
.+||.|+
T Consensus 17 f~CPnCG 23 (24)
T PF07754_consen 17 FPCPNCG 23 (24)
T ss_pred EeCCCCC
Confidence 4666663
No 152
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=26.27 E-value=17 Score=29.03 Aligned_cols=54 Identities=33% Similarity=0.786 Sum_probs=26.6
Q ss_pred EeeeEeccCCCCCcee------eCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecC
Q 017925 83 LSHLETCEVCTGTGAK------MGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCS 150 (363)
Q Consensus 83 ~~~~~~C~~C~GsG~~------~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~ 150 (363)
+..-..|+.|+|.... +-+..+.|..|+ +| .++..|--|++.|..-.-.|..|.
T Consensus 17 i~~G~LCEkCDgkC~ICDS~VRP~tlVRiC~eC~------------~G--s~q~~ciic~~~gV~d~~yc~ect 76 (110)
T KOG1705|consen 17 IAIGRLCEKCDGKCVICDSYVRPCTLVRICDECN------------YG--SYQGRCVICGGVGVSDAYYCKECT 76 (110)
T ss_pred chhhhhHHhcCCcccccccccccceeeeeehhcC------------Cc--cccCceEEecCCcccchHHHHHHH
Confidence 3344578888876432 223344455543 11 112456666665554444555553
No 153
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=25.57 E-value=47 Score=21.59 Aligned_cols=27 Identities=41% Similarity=0.919 Sum_probs=9.4
Q ss_pred CCCCccccEEEEeeeCCCcceeeeecCCCCC
Q 017925 106 CSTCGGRGQVMRTDQTPFGLFSQVSVCPSCG 136 (363)
Q Consensus 106 C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 136 (363)
|+.|.+.=. .+++.|-=.....|+.|+
T Consensus 3 C~~CG~~l~----~~ip~gd~r~R~vC~~Cg 29 (34)
T PF14803_consen 3 CPQCGGPLE----RRIPEGDDRERLVCPACG 29 (34)
T ss_dssp -TTT--B-E----EE--TT-SS-EEEETTTT
T ss_pred cccccChhh----hhcCCCCCccceECCCCC
Confidence 666655511 122333333346677664
No 154
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=25.55 E-value=35 Score=30.57 Aligned_cols=25 Identities=36% Similarity=0.748 Sum_probs=14.7
Q ss_pred EeccCCCCCceeeCceeeeCCCCccccEE
Q 017925 87 ETCEVCTGTGAKMGSKMRICSTCGGRGQV 115 (363)
Q Consensus 87 ~~C~~C~GsG~~~g~~~~~C~~C~G~G~~ 115 (363)
.+|..|.+.--+. .+||.|+..|..
T Consensus 163 ilCtvCe~r~w~g----~~CPKCGr~G~p 187 (200)
T PF12387_consen 163 ILCTVCEGREWKG----GNCPKCGRHGKP 187 (200)
T ss_pred EEEeeeecCccCC----CCCCcccCCCCC
Confidence 5677777654432 347777666653
No 155
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=25.50 E-value=43 Score=36.77 Aligned_cols=40 Identities=25% Similarity=0.646 Sum_probs=26.9
Q ss_pred eEeccCCCCCceee-CceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcc
Q 017925 86 LETCEVCTGTGAKM-GSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 138 (363)
Q Consensus 86 ~~~C~~C~GsG~~~-g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~ 138 (363)
...|+.|+..=... .+....|+.|+-...+ ...|+.|++.
T Consensus 444 v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~-------------p~~Cp~Cgs~ 484 (730)
T COG1198 444 IAECPNCDSPLTLHKATGQLRCHYCGYQEPI-------------PQSCPECGSE 484 (730)
T ss_pred cccCCCCCcceEEecCCCeeEeCCCCCCCCC-------------CCCCCCCCCC
Confidence 45799998764433 2356789999755221 1789999987
No 156
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=25.21 E-value=1.1e+02 Score=25.44 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=30.2
Q ss_pred EecCCCCCCCcEEEEccCCCCCCCC-----CCCCccEEEEEEEEcCC
Q 017925 240 LQVPPGTQPGDVLVLAKKGAPKLNK-----PSIRGDHLFTVKVTIPN 281 (363)
Q Consensus 240 l~ip~gtq~g~~~~l~g~G~P~~~~-----~~~rGDL~V~~~V~~P~ 281 (363)
..||.+.++|+.+.|.|.=.+...+ ....+|+.+||++.+++
T Consensus 3 ~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~~~di~lH~n~rf~~ 49 (128)
T smart00276 3 LPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTGGDDIALHFNPRFNE 49 (128)
T ss_pred ccCCCCCCCCCEEEEEEEECCCCCEEEEEeecCCCCEEEEEeccCCC
Confidence 4678889999999999875443211 11236999999999975
No 157
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=25.10 E-value=1.4e+02 Score=24.40 Aligned_cols=28 Identities=25% Similarity=0.671 Sum_probs=21.1
Q ss_pred cceeee-ecCCCCCcccEEec---eeeeecCC
Q 017925 124 GLFSQV-SVCPSCGGEGEVIS---EYCRKCSG 151 (363)
Q Consensus 124 G~~~~~-~~C~~C~G~G~vi~---~~C~~C~G 151 (363)
|.+... ..|.-|.++|..++ -.|..|.-
T Consensus 29 g~~~va~daCeiC~~~GY~q~g~~lvC~~C~~ 60 (102)
T PF10080_consen 29 GSYRVAFDACEICGPKGYYQEGDQLVCKNCGV 60 (102)
T ss_pred CCEEEEEEeccccCCCceEEECCEEEEecCCC
Confidence 444444 89999999999985 46888853
No 158
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=24.97 E-value=9.5e+02 Score=26.39 Aligned_cols=15 Identities=33% Similarity=0.559 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHHHHh
Q 017925 282 RISAKERELLEELAS 296 (363)
Q Consensus 282 ~l~~~q~~ll~~l~~ 296 (363)
.++++..+.+.++++
T Consensus 258 ~~t~ed~e~i~elak 272 (682)
T COG1241 258 EITEEDEEEIKELAK 272 (682)
T ss_pred cCCHHHHHHHHHHhc
Confidence 467777777777764
No 159
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=24.19 E-value=27 Score=33.65 Aligned_cols=9 Identities=44% Similarity=1.187 Sum_probs=3.3
Q ss_pred ecCCCCCcc
Q 017925 130 SVCPSCGGE 138 (363)
Q Consensus 130 ~~C~~C~G~ 138 (363)
..|+.|+-.
T Consensus 212 ~~Cp~Cg~~ 220 (290)
T PF04216_consen 212 IKCPYCGNT 220 (290)
T ss_dssp TS-TTT---
T ss_pred CCCcCCCCC
Confidence 567777544
No 160
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=24.05 E-value=49 Score=24.47 Aligned_cols=6 Identities=50% Similarity=1.492 Sum_probs=3.7
Q ss_pred ecCCCC
Q 017925 130 SVCPSC 135 (363)
Q Consensus 130 ~~C~~C 135 (363)
.+||.|
T Consensus 28 F~CPnC 33 (61)
T COG2888 28 FPCPNC 33 (61)
T ss_pred eeCCCC
Confidence 566666
No 161
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=23.87 E-value=92 Score=24.70 Aligned_cols=27 Identities=4% Similarity=0.151 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCCccccCCCc
Q 017925 283 ISAKERELLEELASLRNTTGSRTRTRPKT 311 (363)
Q Consensus 283 l~~~q~~ll~~l~~~~~~~~~~~~~~~~~ 311 (363)
|++++++-|..+..-..+... .+.+++
T Consensus 28 L~~~~r~~~d~~i~~y~~~~~--lVDGvP 54 (85)
T PF07240_consen 28 LTPQDRQRIDRFIRRYKEENN--LVDGVP 54 (85)
T ss_pred CCHHHHHHHHHHHHHHHHHhh--cccCcC
Confidence 899999998888765554433 444543
No 162
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=23.83 E-value=1.4e+02 Score=26.19 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=29.5
Q ss_pred CCccEEEEEEEEcCCCCCHHHHHHHHHHHhhcC
Q 017925 267 IRGDHLFTVKVTIPNRISAKERELLEELASLRN 299 (363)
Q Consensus 267 ~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~~~~ 299 (363)
.+|+-.+.|....|..+++.|+++|+++.....
T Consensus 108 ~~g~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf~ 140 (147)
T COG5435 108 ERGDTVLIFTLTTPGEFTPSQKKAWEQVIQSFV 140 (147)
T ss_pred ccCCeEEEEEecCCCCCCHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999986443
No 163
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=23.47 E-value=1.1e+02 Score=25.32 Aligned_cols=10 Identities=30% Similarity=0.557 Sum_probs=5.3
Q ss_pred eeeEeccCCC
Q 017925 84 SHLETCEVCT 93 (363)
Q Consensus 84 ~~~~~C~~C~ 93 (363)
+....|..|.
T Consensus 68 p~~~~C~~Cg 77 (114)
T PRK03681 68 EAECWCETCQ 77 (114)
T ss_pred CcEEEcccCC
Confidence 3344566665
No 164
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=23.23 E-value=84 Score=23.19 Aligned_cols=14 Identities=7% Similarity=0.093 Sum_probs=11.3
Q ss_pred EEEeehhhhhcCCe
Q 017925 65 DIVLEFSESIFGAE 78 (363)
Q Consensus 65 ~l~ltlee~~~G~~ 78 (363)
+.+|+|+|+..|..
T Consensus 30 RFeIsLeDl~~GE~ 43 (67)
T COG5216 30 RFEISLEDLRNGEV 43 (67)
T ss_pred EeEEEHHHhhCCce
Confidence 36889999999954
No 165
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=23.22 E-value=63 Score=23.53 Aligned_cols=7 Identities=57% Similarity=1.877 Sum_probs=3.0
Q ss_pred ecCCCCC
Q 017925 130 SVCPSCG 136 (363)
Q Consensus 130 ~~C~~C~ 136 (363)
..|+.|+
T Consensus 18 ~~CP~CG 24 (56)
T PRK13130 18 EICPVCG 24 (56)
T ss_pred ccCcCCC
Confidence 3444443
No 166
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=23.20 E-value=70 Score=21.78 Aligned_cols=7 Identities=57% Similarity=1.535 Sum_probs=3.8
Q ss_pred ecCCCCC
Q 017925 130 SVCPSCG 136 (363)
Q Consensus 130 ~~C~~C~ 136 (363)
..|+.|+
T Consensus 22 ~~Cp~CG 28 (46)
T PRK00398 22 VRCPYCG 28 (46)
T ss_pred eECCCCC
Confidence 4555554
No 167
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=22.56 E-value=1.3e+02 Score=24.86 Aligned_cols=10 Identities=30% Similarity=0.590 Sum_probs=5.4
Q ss_pred eeeEeccCCC
Q 017925 84 SHLETCEVCT 93 (363)
Q Consensus 84 ~~~~~C~~C~ 93 (363)
+....|..|.
T Consensus 68 p~~~~C~~Cg 77 (115)
T TIGR00100 68 PVECECEDCS 77 (115)
T ss_pred CcEEEcccCC
Confidence 3345566665
No 168
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=22.00 E-value=51 Score=38.17 Aligned_cols=36 Identities=33% Similarity=0.782 Sum_probs=24.9
Q ss_pred eeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCC
Q 017925 102 KMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 152 (363)
Q Consensus 102 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~ 152 (363)
....||.|+.... ...|+.|+..-.. .-.|+.|..+
T Consensus 666 ~~rkCPkCG~~t~--------------~~fCP~CGs~te~-vy~CPsCGae 701 (1337)
T PRK14714 666 GRRRCPSCGTETY--------------ENRCPDCGTHTEP-VYVCPDCGAE 701 (1337)
T ss_pred EEEECCCCCCccc--------------cccCcccCCcCCC-ceeCccCCCc
Confidence 3578999975421 1489999887432 3489999774
No 169
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=21.75 E-value=61 Score=27.09 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=5.5
Q ss_pred CCHHHHHHHHHHH
Q 017925 283 ISAKERELLEELA 295 (363)
Q Consensus 283 l~~~q~~ll~~l~ 295 (363)
|+++|.+.++.|.
T Consensus 34 L~~E~~~Fi~~Fi 46 (113)
T PF09862_consen 34 LSPEQLEFIKLFI 46 (113)
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
No 170
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=21.74 E-value=1.1e+02 Score=22.18 Aligned_cols=12 Identities=25% Similarity=0.974 Sum_probs=6.9
Q ss_pred eeCCCCccccEE
Q 017925 104 RICSTCGGRGQV 115 (363)
Q Consensus 104 ~~C~~C~G~G~~ 115 (363)
..||.|++.-.+
T Consensus 5 i~CP~CgnKTR~ 16 (55)
T PF14205_consen 5 ILCPICGNKTRL 16 (55)
T ss_pred EECCCCCCccce
Confidence 356777665543
No 171
>PRK04023 DNA polymerase II large subunit; Validated
Probab=21.21 E-value=46 Score=37.67 Aligned_cols=37 Identities=30% Similarity=0.619 Sum_probs=25.6
Q ss_pred ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCC
Q 017925 101 SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGE 152 (363)
Q Consensus 101 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~ 152 (363)
.....|+.|+-.+ ....|+.|+..- .....|+.|.-.
T Consensus 624 Vg~RfCpsCG~~t--------------~~frCP~CG~~T-e~i~fCP~CG~~ 660 (1121)
T PRK04023 624 IGRRKCPSCGKET--------------FYRRCPFCGTHT-EPVYRCPRCGIE 660 (1121)
T ss_pred ccCccCCCCCCcC--------------CcccCCCCCCCC-CcceeCccccCc
Confidence 3567899997553 227899999872 334589999544
No 172
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=21.17 E-value=1.2e+02 Score=21.80 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=20.5
Q ss_pred EEEcCCCCCHHHHHHHHHHHhhcCC
Q 017925 276 KVTIPNRISAKERELLEELASLRNT 300 (363)
Q Consensus 276 ~V~~P~~l~~~q~~ll~~l~~~~~~ 300 (363)
.+.||. +++.+|..+.+||+..+=
T Consensus 18 ~~~fpp-m~~~~R~~vH~lA~~~~L 41 (58)
T cd02646 18 SLSFPP-MDKHGRKTIHKLANCYNL 41 (58)
T ss_pred eEecCC-CCHHHHHHHHHHHHHcCC
Confidence 457888 999999999999987664
No 173
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=21.11 E-value=1e+02 Score=22.03 Aligned_cols=32 Identities=28% Similarity=0.826 Sum_probs=15.5
Q ss_pred eeCCCCccccEEEEeeeCCC--cceeeeecCCCCCc
Q 017925 104 RICSTCGGRGQVMRTDQTPF--GLFSQVSVCPSCGG 137 (363)
Q Consensus 104 ~~C~~C~G~G~~~~~~~~~~--G~~~~~~~C~~C~G 137 (363)
..||.| |.-.+........ +++ ....|..|+.
T Consensus 4 kPCPFC-G~~~~~~~~~~~~~~~~~-~~V~C~~Cga 37 (61)
T PF14354_consen 4 KPCPFC-GSADVLIRQDEGFDYGMY-YYVECTDCGA 37 (61)
T ss_pred cCCCCC-CCcceEeecccCCCCCCE-EEEEcCCCCC
Confidence 457778 6555443332221 111 2245777754
No 174
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=21.08 E-value=44 Score=34.14 Aligned_cols=15 Identities=33% Similarity=0.795 Sum_probs=11.8
Q ss_pred eeeCCCCccccEEEE
Q 017925 103 MRICSTCGGRGQVMR 117 (363)
Q Consensus 103 ~~~C~~C~G~G~~~~ 117 (363)
...||.|+|+|.+..
T Consensus 390 ~~~Cp~C~G~G~v~s 404 (414)
T TIGR00757 390 GTVCPHCSGTGIVKT 404 (414)
T ss_pred cCCCCCCcCeeEEcc
Confidence 356999999998754
No 175
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=20.54 E-value=63 Score=23.77 Aligned_cols=10 Identities=50% Similarity=0.687 Sum_probs=4.6
Q ss_pred EEEeCCCCCC
Q 017925 162 KVKVPPGVST 171 (363)
Q Consensus 162 ~V~IP~Gv~~ 171 (363)
.|.+||=..+
T Consensus 28 ~~~~PprFSP 37 (59)
T COG2260 28 KVPHPPRFSP 37 (59)
T ss_pred ccCCCCCCCc
Confidence 3455554433
No 176
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.32 E-value=79 Score=24.73 Aligned_cols=6 Identities=50% Similarity=1.785 Sum_probs=3.3
Q ss_pred eCCCCc
Q 017925 105 ICSTCG 110 (363)
Q Consensus 105 ~C~~C~ 110 (363)
.||.|+
T Consensus 3 lCP~C~ 8 (88)
T COG3809 3 LCPICG 8 (88)
T ss_pred ccCcCC
Confidence 366664
No 177
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=20.26 E-value=99 Score=27.78 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHhhcCCC
Q 017925 282 RISAKERELLEELASLRNTT 301 (363)
Q Consensus 282 ~l~~~q~~ll~~l~~~~~~~ 301 (363)
.+..++++.++.+.+.+-+-
T Consensus 113 ~~~~Ke~eF~~rIkknRvDp 132 (173)
T PF08566_consen 113 QMDAKEKEFLARIKKNRVDP 132 (173)
T ss_pred HHHHHHHHHHHHHHHcCCCc
Confidence 45778888888888766543
No 178
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=20.19 E-value=88 Score=30.03 Aligned_cols=31 Identities=16% Similarity=0.366 Sum_probs=25.9
Q ss_pred EEEEeceEEeecC-cEEEEeccCceE-EEecCC
Q 017925 214 STISISYLDAIMG-TVVKVKTVEGIS-ELQVPP 244 (363)
Q Consensus 214 ~~~~I~l~eAllG-~~~~v~tldG~~-~l~ip~ 244 (363)
|+..|-|+||+.| +..+|++.|+.+ .|.|.|
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTp 50 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITP 50 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcC
Confidence 4568899999999 577999999986 688766
No 179
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=20.16 E-value=85 Score=26.21 Aligned_cols=19 Identities=47% Similarity=1.059 Sum_probs=8.0
Q ss_pred CCCCCcccEEeceeeeecC
Q 017925 132 CPSCGGEGEVISEYCRKCS 150 (363)
Q Consensus 132 C~~C~G~G~vi~~~C~~C~ 150 (363)
||.|++.=.|..-.|+.|.
T Consensus 1 CPvCg~~l~vt~l~C~~C~ 19 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCG 19 (113)
T ss_pred CCCCCCceEEEEEEcCCCC
Confidence 3444433333344444443
No 180
>PHA00626 hypothetical protein
Probab=20.05 E-value=84 Score=22.96 Aligned_cols=6 Identities=50% Similarity=1.215 Sum_probs=3.1
Q ss_pred ecCCCC
Q 017925 130 SVCPSC 135 (363)
Q Consensus 130 ~~C~~C 135 (363)
-.|+.|
T Consensus 24 YkCkdC 29 (59)
T PHA00626 24 YVCCDC 29 (59)
T ss_pred eEcCCC
Confidence 345555
Done!