Query 017926
Match_columns 363
No_of_seqs 233 out of 1163
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:38:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2160 Armadillo/beta-catenin 100.0 2.5E-39 5.4E-44 313.2 22.1 249 75-333 10-279 (342)
2 PF08609 Fes1: Nucleotide exch 99.8 2.1E-19 4.6E-24 145.4 6.9 89 77-170 3-92 (92)
3 KOG0166 Karyopherin (importin) 99.7 9E-17 1.9E-21 163.8 17.7 192 133-332 111-304 (514)
4 KOG0166 Karyopherin (importin) 99.7 2E-16 4.4E-21 161.2 18.0 209 118-332 216-432 (514)
5 PLN03200 cellulose synthase-in 99.7 7E-15 1.5E-19 168.7 22.6 191 136-334 367-557 (2102)
6 PLN03200 cellulose synthase-in 99.6 1.6E-14 3.5E-19 165.7 21.4 185 146-332 417-634 (2102)
7 COG5064 SRP1 Karyopherin (impo 99.6 5.2E-15 1.1E-19 143.1 10.4 171 153-332 135-310 (526)
8 COG5064 SRP1 Karyopherin (impo 99.6 6E-15 1.3E-19 142.7 10.2 210 119-332 223-439 (526)
9 cd00020 ARM Armadillo/beta-cat 99.5 1.9E-13 4E-18 112.1 14.1 118 169-288 2-119 (120)
10 KOG4224 Armadillo repeat prote 99.4 3E-12 6.5E-17 125.0 15.8 179 148-336 182-363 (550)
11 cd00020 ARM Armadillo/beta-cat 99.3 4.9E-11 1.1E-15 97.6 12.5 115 211-332 2-116 (120)
12 KOG4224 Armadillo repeat prote 99.2 2.4E-11 5.2E-16 118.8 8.5 180 147-336 99-280 (550)
13 PF04826 Arm_2: Armadillo-like 99.1 2.4E-09 5.1E-14 102.1 14.0 150 171-332 9-159 (254)
14 KOG2160 Armadillo/beta-catenin 99.0 1E-08 2.3E-13 100.4 17.7 168 154-332 65-236 (342)
15 PF05804 KAP: Kinesin-associat 99.0 1.9E-08 4.2E-13 107.6 20.9 170 151-332 267-437 (708)
16 PF10508 Proteasom_PSMB: Prote 99.0 1.9E-08 4.2E-13 104.5 20.4 189 136-336 43-231 (503)
17 KOG4199 Uncharacterized conser 98.9 1E-07 2.2E-12 92.9 18.8 172 164-347 273-450 (461)
18 PF10508 Proteasom_PSMB: Prote 98.9 1.1E-07 2.3E-12 99.1 20.3 194 115-319 60-255 (503)
19 PF04826 Arm_2: Armadillo-like 98.8 4.9E-07 1.1E-11 86.3 18.9 185 131-330 12-199 (254)
20 PF05804 KAP: Kinesin-associat 98.8 2.8E-07 6E-12 98.9 17.4 158 146-315 303-461 (708)
21 KOG1293 Proteins containing ar 98.7 2.2E-07 4.7E-12 96.8 13.5 163 164-332 367-529 (678)
22 KOG0168 Putative ubiquitin fus 98.6 1.9E-06 4E-11 92.0 19.1 194 127-332 163-360 (1051)
23 KOG4199 Uncharacterized conser 98.5 1.4E-05 3E-10 78.4 19.5 186 139-332 197-399 (461)
24 PF03224 V-ATPase_H_N: V-ATPas 98.4 6.7E-06 1.5E-10 80.4 15.3 181 145-333 69-266 (312)
25 PF08045 CDC14: Cell division 98.2 2.1E-05 4.5E-10 75.0 12.8 102 187-288 104-206 (257)
26 PF00514 Arm: Armadillo/beta-c 98.2 4.3E-06 9.3E-11 57.2 5.6 41 205-245 1-41 (41)
27 KOG0946 ER-Golgi vesicle-tethe 98.2 3.9E-05 8.5E-10 81.7 15.2 182 132-318 62-265 (970)
28 PRK09687 putative lyase; Provi 98.2 5.5E-05 1.2E-09 73.2 15.2 166 133-332 25-217 (280)
29 KOG1048 Neural adherens juncti 98.1 2.1E-05 4.6E-10 83.7 12.3 141 217-362 234-376 (717)
30 PF12348 CLASP_N: CLASP N term 98.1 2.3E-05 5E-10 72.4 10.8 179 141-332 15-202 (228)
31 PRK09687 putative lyase; Provi 98.1 0.00013 2.8E-09 70.6 16.1 153 146-332 67-246 (280)
32 PF13513 HEAT_EZ: HEAT-like re 98.0 1.1E-05 2.4E-10 58.3 5.2 55 188-243 1-55 (55)
33 PF13646 HEAT_2: HEAT repeats; 98.0 2.5E-05 5.4E-10 61.0 7.3 87 176-285 1-88 (88)
34 KOG1048 Neural adherens juncti 98.0 4.9E-05 1.1E-09 81.0 10.9 113 176-289 235-349 (717)
35 PRK13800 putative oxidoreducta 97.9 0.00084 1.8E-08 74.7 19.8 71 260-332 777-863 (897)
36 KOG0168 Putative ubiquitin fus 97.9 0.00096 2.1E-08 71.9 18.9 258 76-347 150-421 (1051)
37 cd00256 VATPase_H VATPase_H, r 97.8 0.0016 3.5E-08 66.5 18.8 195 130-332 52-254 (429)
38 PF00514 Arm: Armadillo/beta-c 97.8 1.7E-05 3.6E-10 54.2 3.0 38 165-202 3-40 (41)
39 PRK13800 putative oxidoreducta 97.8 0.0015 3.2E-08 72.8 19.2 141 175-332 715-895 (897)
40 PF01602 Adaptin_N: Adaptin N 97.7 0.0023 5E-08 66.0 17.9 164 145-332 54-217 (526)
41 KOG4500 Rho/Rac GTPase guanine 97.7 0.0002 4.4E-09 72.2 9.5 142 184-331 52-204 (604)
42 PF03224 V-ATPase_H_N: V-ATPas 97.6 0.00078 1.7E-08 65.8 12.7 174 146-326 118-304 (312)
43 PF01602 Adaptin_N: Adaptin N 97.6 0.0022 4.8E-08 66.1 16.6 182 129-332 73-256 (526)
44 PF09759 Atx10homo_assoc: Spin 97.6 0.00028 6.1E-09 58.3 7.9 68 190-257 2-71 (102)
45 KOG2171 Karyopherin (importin) 97.6 0.00086 1.9E-08 74.2 13.6 155 181-345 355-510 (1075)
46 KOG1517 Guanine nucleotide bin 97.5 0.002 4.3E-08 70.9 15.3 196 127-332 468-667 (1387)
47 PF11698 V-ATPase_H_C: V-ATPas 97.5 0.0002 4.3E-09 60.7 5.2 78 127-205 39-117 (119)
48 PF13646 HEAT_2: HEAT repeats; 97.4 0.00057 1.2E-08 53.2 6.9 86 218-332 1-88 (88)
49 KOG1293 Proteins containing ar 97.4 0.0011 2.5E-08 69.6 10.9 140 146-289 390-533 (678)
50 PF05536 Neurochondrin: Neuroc 97.4 0.0047 1E-07 65.2 15.3 153 129-290 3-169 (543)
51 KOG2122 Beta-catenin-binding p 97.4 0.0012 2.5E-08 74.6 11.0 143 144-290 452-602 (2195)
52 smart00185 ARM Armadillo/beta- 97.3 0.0004 8.7E-09 46.4 4.4 39 165-203 3-41 (41)
53 cd00256 VATPase_H VATPase_H, r 97.2 0.0092 2E-07 61.1 15.0 154 176-336 55-216 (429)
54 PF14664 RICTOR_N: Rapamycin-i 97.2 0.015 3.2E-07 58.6 16.1 180 143-332 78-265 (371)
55 PTZ00429 beta-adaptin; Provisi 97.2 0.036 7.7E-07 60.7 20.0 158 147-332 46-204 (746)
56 KOG4500 Rho/Rac GTPase guanine 97.2 0.0021 4.6E-08 65.0 9.7 156 173-332 86-249 (604)
57 smart00185 ARM Armadillo/beta- 97.2 0.0011 2.4E-08 44.2 5.4 39 206-244 2-40 (41)
58 KOG2122 Beta-catenin-binding p 97.1 0.0029 6.2E-08 71.6 10.9 178 164-343 383-566 (2195)
59 KOG2171 Karyopherin (importin) 97.1 0.013 2.8E-07 65.2 15.7 194 133-343 249-465 (1075)
60 PTZ00429 beta-adaptin; Provisi 97.1 0.057 1.2E-06 59.1 20.3 158 112-288 48-207 (746)
61 KOG0946 ER-Golgi vesicle-tethe 97.1 0.022 4.7E-07 61.5 16.3 215 127-352 18-257 (970)
62 COG5369 Uncharacterized conser 97.0 0.002 4.3E-08 66.7 8.1 136 192-333 407-542 (743)
63 KOG1517 Guanine nucleotide bin 97.0 0.007 1.5E-07 66.8 12.1 159 129-289 547-732 (1387)
64 KOG1789 Endocytosis protein RM 96.9 0.024 5.3E-07 62.8 15.6 139 147-291 1739-1885(2235)
65 KOG4646 Uncharacterized conser 96.9 0.0097 2.1E-07 51.9 9.7 128 174-310 16-144 (173)
66 PF09759 Atx10homo_assoc: Spin 96.9 0.0033 7.1E-08 52.0 6.6 67 232-303 2-68 (102)
67 PF11841 DUF3361: Domain of un 96.8 0.021 4.6E-07 50.8 11.5 121 166-289 3-131 (160)
68 TIGR02270 conserved hypothetic 96.8 0.016 3.6E-07 59.1 12.4 153 131-335 54-206 (410)
69 KOG4646 Uncharacterized conser 96.7 0.037 7.9E-07 48.4 12.1 119 145-264 29-147 (173)
70 PF11698 V-ATPase_H_C: V-ATPas 96.6 0.0048 1E-07 52.4 6.0 72 175-246 44-116 (119)
71 KOG3678 SARM protein (with ste 96.5 0.023 5E-07 58.3 11.1 151 173-332 179-332 (832)
72 KOG2759 Vacuolar H+-ATPase V1 96.5 0.087 1.9E-06 53.4 14.7 187 131-331 65-262 (442)
73 KOG3678 SARM protein (with ste 96.5 0.048 1E-06 56.1 12.9 154 133-290 182-337 (832)
74 KOG1059 Vesicle coat complex A 96.4 0.04 8.6E-07 59.0 12.2 33 175-207 182-214 (877)
75 COG5096 Vesicle coat complex, 96.3 0.1 2.2E-06 56.8 15.1 135 176-332 57-191 (757)
76 KOG1222 Kinesin associated pro 96.3 0.033 7.2E-07 57.4 10.7 122 163-290 334-456 (791)
77 PF13513 HEAT_EZ: HEAT-like re 96.2 0.0091 2E-07 42.9 4.5 54 231-287 2-55 (55)
78 PF11841 DUF3361: Domain of un 96.2 0.089 1.9E-06 46.9 11.5 130 209-347 4-139 (160)
79 PF05004 IFRD: Interferon-rela 96.1 0.47 1E-05 46.7 17.5 190 133-333 45-254 (309)
80 KOG2759 Vacuolar H+-ATPase V1 96.1 0.22 4.9E-06 50.5 15.1 197 129-332 153-434 (442)
81 PF05536 Neurochondrin: Neuroc 96.1 0.12 2.6E-06 54.7 13.9 149 176-333 7-165 (543)
82 KOG4413 26S proteasome regulat 96.0 0.077 1.7E-06 52.5 11.2 142 176-325 84-232 (524)
83 PF02985 HEAT: HEAT repeat; I 95.9 0.013 2.7E-07 37.6 3.6 29 176-204 2-30 (31)
84 PF10165 Ric8: Guanine nucleot 95.8 0.068 1.5E-06 55.1 10.6 134 153-289 1-168 (446)
85 TIGR02270 conserved hypothetic 95.6 0.67 1.5E-05 47.4 16.8 89 131-243 117-205 (410)
86 PF12717 Cnd1: non-SMC mitotic 95.5 0.15 3.2E-06 45.8 10.6 90 187-289 1-92 (178)
87 COG5369 Uncharacterized conser 95.5 0.065 1.4E-06 55.9 8.8 155 173-331 430-590 (743)
88 PF12460 MMS19_C: RNAPII trans 95.5 0.34 7.3E-06 49.3 14.2 107 176-289 273-394 (415)
89 PF12755 Vac14_Fab1_bd: Vacuol 95.4 0.079 1.7E-06 43.3 7.6 66 175-244 28-95 (97)
90 PF06371 Drf_GBD: Diaphanous G 95.4 0.58 1.2E-05 41.6 13.8 109 175-288 67-186 (187)
91 COG5096 Vesicle coat complex, 95.3 0.66 1.4E-05 50.7 16.4 160 112-289 35-195 (757)
92 PF14664 RICTOR_N: Rapamycin-i 95.3 0.87 1.9E-05 46.0 16.2 156 147-315 39-196 (371)
93 COG1413 FOG: HEAT repeat [Ener 95.2 0.77 1.7E-05 44.8 15.2 88 133-243 45-133 (335)
94 PF12348 CLASP_N: CLASP N term 95.1 0.35 7.5E-06 44.5 12.0 133 151-290 71-207 (228)
95 PF05918 API5: Apoptosis inhib 95.1 0.15 3.3E-06 53.8 10.4 84 177-271 26-109 (556)
96 KOG1241 Karyopherin (importin) 95.1 1 2.3E-05 48.8 16.4 195 129-332 33-242 (859)
97 PF12031 DUF3518: Domain of un 94.9 0.092 2E-06 49.8 7.4 55 176-230 174-230 (257)
98 PF02985 HEAT: HEAT repeat; I 94.7 0.056 1.2E-06 34.5 3.9 30 217-246 1-30 (31)
99 KOG0213 Splicing factor 3b, su 94.7 0.83 1.8E-05 49.6 14.4 140 179-332 804-950 (1172)
100 KOG1242 Protein containing ada 94.6 1.4 3.1E-05 46.6 15.8 168 148-332 269-440 (569)
101 KOG2734 Uncharacterized conser 94.5 2.7 5.8E-05 43.3 16.9 175 151-332 200-396 (536)
102 PF08045 CDC14: Cell division 94.4 0.5 1.1E-05 45.4 11.2 96 232-333 107-204 (257)
103 cd03561 VHS VHS domain family; 94.4 1.1 2.3E-05 38.4 12.4 73 176-248 39-115 (133)
104 KOG1241 Karyopherin (importin) 94.4 0.17 3.7E-06 54.6 8.7 148 174-332 319-473 (859)
105 KOG2025 Chromosome condensatio 94.3 0.94 2E-05 48.9 13.9 130 146-283 58-187 (892)
106 KOG1062 Vesicle coat complex A 94.2 2.1 4.6E-05 46.8 16.4 198 112-337 50-264 (866)
107 COG1413 FOG: HEAT repeat [Ener 94.2 2.9 6.2E-05 40.7 16.5 103 175-288 106-241 (335)
108 COG5181 HSH155 U2 snRNP splice 94.2 0.65 1.4E-05 49.5 12.2 143 178-332 608-755 (975)
109 KOG1062 Vesicle coat complex A 94.0 2 4.4E-05 46.9 15.9 192 148-346 309-554 (866)
110 KOG2999 Regulator of Rac1, req 94.0 2 4.3E-05 45.3 15.3 224 127-359 79-316 (713)
111 KOG1991 Nuclear transport rece 94.0 1.6 3.4E-05 48.7 15.2 119 133-254 412-541 (1010)
112 KOG1824 TATA-binding protein-i 93.9 1.8 3.8E-05 48.3 15.1 132 189-332 148-282 (1233)
113 KOG1242 Protein containing ada 93.8 0.99 2.1E-05 47.7 12.7 169 174-362 96-268 (569)
114 KOG4413 26S proteasome regulat 93.7 1.7 3.7E-05 43.3 13.5 200 117-327 67-275 (524)
115 cd03567 VHS_GGA VHS domain fam 93.7 0.79 1.7E-05 39.9 10.2 72 175-246 39-117 (139)
116 PF06371 Drf_GBD: Diaphanous G 93.7 0.35 7.6E-06 43.0 8.3 109 217-332 67-183 (187)
117 PF04078 Rcd1: Cell differenti 93.7 1.9 4.1E-05 41.5 13.5 169 129-304 40-227 (262)
118 KOG1248 Uncharacterized conser 93.5 2.9 6.3E-05 47.5 16.3 204 112-332 673-894 (1176)
119 PF04078 Rcd1: Cell differenti 93.4 2.7 5.8E-05 40.5 14.0 211 146-361 8-241 (262)
120 PF14668 RICTOR_V: Rapamycin-i 93.4 0.36 7.9E-06 37.5 6.7 65 191-257 4-69 (73)
121 KOG2023 Nuclear transport rece 93.2 2.5 5.3E-05 45.6 14.4 149 130-289 127-285 (885)
122 cd03569 VHS_Hrs_Vps27p VHS dom 93.0 1.8 4E-05 37.7 11.4 73 175-247 42-116 (142)
123 PF10165 Ric8: Guanine nucleot 92.9 0.3 6.4E-06 50.5 7.3 104 205-316 11-131 (446)
124 PF11701 UNC45-central: Myosin 92.9 0.37 8E-06 42.6 7.0 145 175-330 4-153 (157)
125 KOG1061 Vesicle coat complex A 92.7 0.71 1.5E-05 50.0 10.0 137 174-332 49-185 (734)
126 KOG1824 TATA-binding protein-i 92.4 4.9 0.00011 44.9 15.9 204 131-354 817-1054(1233)
127 PF05918 API5: Apoptosis inhib 92.3 2.7 6E-05 44.6 13.6 99 178-288 63-161 (556)
128 cd03568 VHS_STAM VHS domain fa 92.2 2.3 5.1E-05 37.1 11.1 73 176-248 39-113 (144)
129 KOG1077 Vesicle coat complex A 92.2 4.4 9.5E-05 44.0 14.9 57 149-208 164-221 (938)
130 KOG1222 Kinesin associated pro 92.2 4.2 9.1E-05 42.5 14.2 213 109-334 231-454 (791)
131 PF12755 Vac14_Fab1_bd: Vacuol 92.2 1.7 3.7E-05 35.5 9.5 91 191-288 3-95 (97)
132 KOG3036 Protein involved in ce 92.1 6.1 0.00013 37.9 14.2 201 77-289 23-247 (293)
133 KOG2999 Regulator of Rac1, req 92.0 2.4 5.3E-05 44.7 12.4 163 178-350 87-253 (713)
134 PF12717 Cnd1: non-SMC mitotic 91.9 1.2 2.7E-05 39.8 9.2 86 230-332 2-88 (178)
135 KOG0212 Uncharacterized conser 91.7 11 0.00023 40.1 16.7 139 147-289 264-406 (675)
136 PF06025 DUF913: Domain of Unk 91.5 1.5 3.2E-05 44.4 10.2 123 181-305 113-243 (379)
137 KOG0212 Uncharacterized conser 91.3 8.3 0.00018 40.9 15.4 106 176-289 338-444 (675)
138 KOG1820 Microtubule-associated 91.2 5.5 0.00012 44.3 14.9 168 146-332 266-439 (815)
139 KOG1061 Vesicle coat complex A 91.1 3.8 8.2E-05 44.6 13.2 160 112-289 29-189 (734)
140 KOG2259 Uncharacterized conser 91.1 0.36 7.9E-06 51.6 5.5 75 167-246 366-440 (823)
141 KOG0213 Splicing factor 3b, su 91.1 0.88 1.9E-05 49.5 8.3 153 129-289 797-954 (1172)
142 smart00288 VHS Domain present 91.0 3.9 8.5E-05 35.1 11.1 71 177-247 40-113 (133)
143 PF12460 MMS19_C: RNAPII trans 90.9 20 0.00044 36.4 18.2 186 127-332 185-390 (415)
144 PF12719 Cnd3: Nuclear condens 90.4 4.6 9.9E-05 39.2 12.2 107 174-289 26-143 (298)
145 cd03569 VHS_Hrs_Vps27p VHS dom 90.1 2 4.3E-05 37.5 8.5 94 234-338 22-116 (142)
146 PF00790 VHS: VHS domain; Int 90.1 1.9 4.1E-05 37.2 8.3 70 176-245 44-118 (140)
147 KOG2259 Uncharacterized conser 90.0 0.91 2E-05 48.7 7.3 99 216-332 373-471 (823)
148 PF11701 UNC45-central: Myosin 89.8 0.96 2.1E-05 39.9 6.4 100 182-284 51-154 (157)
149 smart00638 LPD_N Lipoprotein N 89.8 8.9 0.00019 40.5 14.8 163 138-332 364-541 (574)
150 PF08569 Mo25: Mo25-like; Int 89.6 4.7 0.0001 40.2 11.8 183 145-336 88-283 (335)
151 PF10363 DUF2435: Protein of u 89.5 1.5 3.3E-05 35.4 6.8 72 176-249 5-76 (92)
152 COG5209 RCD1 Uncharacterized p 89.3 21 0.00045 34.1 15.0 175 150-332 62-264 (315)
153 PF01365 RYDR_ITPR: RIH domain 89.2 1.1 2.3E-05 41.1 6.5 96 188-290 75-170 (207)
154 COG5231 VMA13 Vacuolar H+-ATPa 89.0 5 0.00011 39.9 11.0 162 165-332 225-424 (432)
155 PF06025 DUF913: Domain of Unk 88.9 4.5 9.7E-05 41.0 11.2 122 192-319 78-208 (379)
156 PF13251 DUF4042: Domain of un 88.9 3.5 7.6E-05 37.6 9.4 146 189-339 1-177 (182)
157 KOG1789 Endocytosis protein RM 88.9 4.4 9.4E-05 46.0 11.5 134 189-332 1740-1879(2235)
158 PF04869 Uso1_p115_head: Uso1 88.5 12 0.00026 37.0 13.6 148 186-338 50-231 (312)
159 KOG2734 Uncharacterized conser 88.4 23 0.0005 36.7 15.6 177 149-330 100-300 (536)
160 cd03568 VHS_STAM VHS domain fa 88.3 2 4.3E-05 37.6 7.2 115 235-360 19-136 (144)
161 COG5181 HSH155 U2 snRNP splice 88.1 1.8 3.9E-05 46.3 7.8 153 131-289 604-759 (975)
162 KOG3036 Protein involved in ce 88.1 26 0.00056 33.8 17.1 177 148-332 39-243 (293)
163 KOG1240 Protein kinase contain 87.8 6.3 0.00014 45.1 12.1 133 147-290 592-726 (1431)
164 KOG1248 Uncharacterized conser 87.5 57 0.0012 37.6 19.3 170 109-288 586-766 (1176)
165 KOG2933 Uncharacterized conser 87.1 4.1 8.8E-05 40.2 9.1 142 128-288 85-233 (334)
166 PF05004 IFRD: Interferon-rela 87.1 26 0.00056 34.4 15.0 151 131-288 86-256 (309)
167 PF01347 Vitellogenin_N: Lipop 87.1 5.1 0.00011 42.6 10.9 161 141-332 405-585 (618)
168 KOG4653 Uncharacterized conser 86.9 16 0.00034 40.7 14.2 189 134-331 749-959 (982)
169 KOG2032 Uncharacterized conser 86.8 17 0.00038 38.0 13.8 120 168-290 248-372 (533)
170 cd03567 VHS_GGA VHS domain fam 86.6 6.8 0.00015 34.1 9.5 98 234-342 19-122 (139)
171 COG5215 KAP95 Karyopherin (imp 86.2 43 0.00093 36.0 16.4 193 146-348 147-366 (858)
172 KOG4535 HEAT and armadillo rep 86.1 2.4 5.2E-05 44.2 7.2 173 150-332 408-599 (728)
173 KOG1060 Vesicle coat complex A 86.0 31 0.00066 38.2 15.7 163 148-345 50-212 (968)
174 KOG0301 Phospholipase A2-activ 85.6 14 0.0003 39.9 12.8 162 115-289 524-704 (745)
175 KOG0414 Chromosome condensatio 85.1 5.7 0.00012 45.3 10.1 133 173-328 917-1056(1251)
176 PF08167 RIX1: rRNA processing 85.0 14 0.0003 32.8 10.9 108 176-289 27-143 (165)
177 PF13764 E3_UbLigase_R4: E3 ub 84.9 8 0.00017 42.9 11.2 133 167-305 110-269 (802)
178 KOG2023 Nuclear transport rece 84.7 12 0.00027 40.5 11.8 171 150-330 636-811 (885)
179 KOG1240 Protein kinase contain 84.5 22 0.00047 41.0 14.2 181 147-332 437-681 (1431)
180 KOG1020 Sister chromatid cohes 84.4 57 0.0012 38.7 17.6 145 128-290 763-922 (1692)
181 KOG2137 Protein kinase [Signal 84.3 19 0.00041 39.2 13.2 137 173-324 388-525 (700)
182 COG5218 YCG1 Chromosome conden 84.3 31 0.00067 37.2 14.4 107 168-282 86-192 (885)
183 KOG2956 CLIP-associating prote 84.0 59 0.0013 34.0 17.0 183 130-332 285-473 (516)
184 KOG1059 Vesicle coat complex A 84.0 5 0.00011 43.6 8.7 122 150-288 126-247 (877)
185 KOG2973 Uncharacterized conser 83.7 22 0.00047 35.3 12.2 98 146-249 16-115 (353)
186 smart00638 LPD_N Lipoprotein N 83.4 20 0.00044 37.8 13.2 116 175-324 443-566 (574)
187 COG5231 VMA13 Vacuolar H+-ATPa 82.7 2 4.2E-05 42.7 4.8 81 165-245 345-428 (432)
188 KOG1967 DNA repair/transcripti 82.7 22 0.00048 39.8 13.1 209 113-330 797-1018(1030)
189 PF14726 RTTN_N: Rotatin, an a 82.7 10 0.00022 31.1 8.3 92 189-283 2-94 (98)
190 cd03565 VHS_Tom1 VHS domain fa 82.7 29 0.00062 30.1 11.7 70 177-246 41-116 (141)
191 COG5209 RCD1 Uncharacterized p 82.6 9.2 0.0002 36.4 8.9 98 150-248 117-221 (315)
192 smart00288 VHS Domain present 82.1 7.6 0.00016 33.3 7.8 91 235-336 19-111 (133)
193 PF08167 RIX1: rRNA processing 82.1 19 0.00041 31.9 10.6 110 216-332 25-139 (165)
194 cd03561 VHS VHS domain family; 81.6 10 0.00022 32.4 8.4 74 217-290 38-113 (133)
195 PF08324 PUL: PUL domain; Int 81.3 8.7 0.00019 36.3 8.7 178 102-289 33-231 (268)
196 KOG1832 HIV-1 Vpr-binding prot 81.2 4.1 8.9E-05 45.3 6.9 151 148-305 567-783 (1516)
197 PF12830 Nipped-B_C: Sister ch 80.8 5.4 0.00012 36.1 6.8 68 176-251 10-80 (187)
198 PF10363 DUF2435: Protein of u 80.8 7.2 0.00016 31.5 6.7 86 131-227 3-88 (92)
199 KOG2973 Uncharacterized conser 80.2 59 0.0013 32.3 13.8 208 129-347 42-283 (353)
200 PF12719 Cnd3: Nuclear condens 80.0 17 0.00038 35.1 10.4 106 216-332 26-139 (298)
201 PF01347 Vitellogenin_N: Lipop 79.7 7.5 0.00016 41.3 8.5 116 175-324 487-610 (618)
202 PF04063 DUF383: Domain of unk 78.2 17 0.00038 33.3 9.2 128 183-319 4-159 (192)
203 PF06012 DUF908: Domain of Unk 78.1 9.3 0.0002 37.8 8.0 63 189-252 237-304 (329)
204 KOG1243 Protein kinase [Genera 76.4 23 0.00051 38.4 10.7 130 146-289 267-398 (690)
205 KOG2676 Uncharacterized conser 75.7 2.7 5.9E-05 42.2 3.4 65 193-257 375-441 (478)
206 KOG1967 DNA repair/transcripti 75.3 9.2 0.0002 42.7 7.5 105 175-282 910-1017(1030)
207 PF08569 Mo25: Mo25-like; Int 73.1 49 0.0011 33.0 11.6 137 150-289 140-283 (335)
208 PF10521 DUF2454: Protein of u 72.9 49 0.0011 31.8 11.4 48 175-222 120-168 (282)
209 KOG2062 26S proteasome regulat 72.5 25 0.00054 38.7 9.7 119 186-328 567-686 (929)
210 PF14668 RICTOR_V: Rapamycin-i 72.4 12 0.00026 29.0 5.6 68 233-308 4-71 (73)
211 PF11707 Npa1: Ribosome 60S bi 72.0 1.1E+02 0.0023 30.3 14.0 153 176-332 58-233 (330)
212 KOG0211 Protein phosphatase 2A 70.9 1E+02 0.0023 34.2 14.3 172 108-288 171-344 (759)
213 PF11707 Npa1: Ribosome 60S bi 70.8 99 0.0022 30.5 13.2 131 187-333 39-184 (330)
214 PF00790 VHS: VHS domain; Int 70.5 10 0.00022 32.6 5.4 93 235-338 24-120 (140)
215 cd00197 VHS_ENTH_ANTH VHS, ENT 70.4 24 0.00053 28.9 7.5 88 234-332 18-111 (115)
216 cd03565 VHS_Tom1 VHS domain fa 70.3 25 0.00054 30.5 7.8 94 235-338 20-117 (141)
217 PF14500 MMS19_N: Dos2-interac 69.7 66 0.0014 30.9 11.3 136 179-330 4-147 (262)
218 PF11865 DUF3385: Domain of un 69.5 55 0.0012 28.9 10.0 140 176-332 12-153 (160)
219 PF11791 Aconitase_B_N: Aconit 68.3 17 0.00036 32.3 6.2 44 191-245 80-123 (154)
220 KOG2274 Predicted importin 9 [ 67.8 23 0.00049 39.7 8.4 129 132-261 572-705 (1005)
221 KOG2611 Neurochondrin/leucine- 67.7 1.1E+02 0.0023 32.5 12.6 135 150-289 80-225 (698)
222 KOG4151 Myosin assembly protei 66.9 41 0.00088 37.0 10.0 154 170-332 580-737 (748)
223 cd03562 CID CID (CTD-Interacti 66.4 39 0.00085 27.6 8.0 89 185-285 16-104 (114)
224 KOG1243 Protein kinase [Genera 65.9 41 0.0009 36.6 9.7 72 171-245 327-398 (690)
225 COG5116 RPN2 26S proteasome re 64.7 43 0.00093 36.0 9.3 110 184-317 562-672 (926)
226 KOG1087 Cytosolic sorting prot 64.6 34 0.00074 35.8 8.7 67 176-242 40-109 (470)
227 PF14225 MOR2-PAG1_C: Cell mor 64.2 1E+02 0.0022 29.6 11.4 139 170-332 107-250 (262)
228 COG5215 KAP95 Karyopherin (imp 63.9 2.2E+02 0.0048 30.9 16.7 188 131-332 39-246 (858)
229 PF08216 CTNNBL: Catenin-beta- 63.7 9.6 0.00021 31.9 3.7 43 150-192 63-105 (108)
230 PF06685 DUF1186: Protein of u 63.3 99 0.0022 29.6 11.0 73 173-257 72-154 (249)
231 COG5098 Chromosome condensatio 63.3 48 0.001 36.5 9.5 105 176-289 301-415 (1128)
232 PF08506 Cse1: Cse1; InterPro 63.3 69 0.0015 32.4 10.5 132 186-331 223-370 (370)
233 PF08389 Xpo1: Exportin 1-like 63.2 24 0.00052 29.4 6.3 80 112-198 67-148 (148)
234 PF14726 RTTN_N: Rotatin, an a 63.1 59 0.0013 26.7 8.2 84 148-232 2-87 (98)
235 KOG1058 Vesicle coat complex C 62.9 81 0.0018 35.0 11.2 131 102-246 17-164 (948)
236 KOG2611 Neurochondrin/leucine- 62.6 2.2E+02 0.0047 30.3 14.3 130 148-284 26-180 (698)
237 KOG1077 Vesicle coat complex A 61.3 1.2E+02 0.0025 33.6 11.9 105 225-347 120-224 (938)
238 KOG1820 Microtubule-associated 61.1 15 0.00033 40.9 5.7 98 148-247 347-445 (815)
239 COG5240 SEC21 Vesicle coat com 60.5 1.2E+02 0.0027 32.7 11.8 52 232-288 503-554 (898)
240 KOG3665 ZYG-1-like serine/thre 60.5 78 0.0017 34.8 11.0 51 239-290 494-544 (699)
241 PF11791 Aconitase_B_N: Aconit 60.5 33 0.00071 30.5 6.6 26 176-201 96-121 (154)
242 PF07814 WAPL: Wings apart-lik 60.4 73 0.0016 31.9 10.0 92 133-226 23-116 (361)
243 KOG1991 Nuclear transport rece 60.2 95 0.0021 35.2 11.4 98 187-290 431-533 (1010)
244 KOG4464 Signaling protein RIC- 60.2 1E+02 0.0022 32.0 10.8 82 186-269 109-198 (532)
245 KOG1058 Vesicle coat complex C 60.2 29 0.00064 38.2 7.4 152 126-290 169-347 (948)
246 KOG0915 Uncharacterized conser 59.8 3.4E+02 0.0074 32.7 15.9 127 177-318 1042-1183(1702)
247 PF10521 DUF2454: Protein of u 59.4 49 0.0011 31.9 8.4 74 216-289 119-203 (282)
248 PF12397 U3snoRNP10: U3 small 59.3 95 0.0021 25.6 9.1 66 176-247 8-76 (121)
249 cd08050 TAF6 TATA Binding Prot 58.3 1.8E+02 0.0039 29.0 12.4 125 113-243 176-338 (343)
250 KOG1943 Beta-tubulin folding c 57.7 64 0.0014 36.9 9.6 58 185-246 555-612 (1133)
251 PF04388 Hamartin: Hamartin pr 56.9 80 0.0017 34.5 10.3 57 231-288 83-139 (668)
252 KOG1087 Cytosolic sorting prot 56.9 40 0.00087 35.3 7.6 77 258-342 38-116 (470)
253 PF04869 Uso1_p115_head: Uso1 55.8 1.9E+02 0.0041 28.6 11.9 104 186-289 109-231 (312)
254 KOG4535 HEAT and armadillo rep 55.7 45 0.00098 35.2 7.6 106 184-289 401-513 (728)
255 KOG0414 Chromosome condensatio 55.4 1.2E+02 0.0026 35.2 11.3 111 175-289 313-428 (1251)
256 COG5098 Chromosome condensatio 55.4 47 0.001 36.6 7.8 134 173-329 890-1030(1128)
257 PF10257 RAI16-like: Retinoic 55.1 1.2E+02 0.0025 30.4 10.5 137 172-316 7-181 (353)
258 cd00197 VHS_ENTH_ANTH VHS, ENT 55.0 71 0.0015 26.1 7.6 72 217-288 38-114 (115)
259 cd03572 ENTH_epsin_related ENT 54.6 1.2E+02 0.0026 25.9 8.9 86 198-288 25-118 (122)
260 PF06012 DUF908: Domain of Unk 54.4 54 0.0012 32.4 7.9 76 148-223 237-323 (329)
261 PF14663 RasGEF_N_2: Rapamycin 53.2 32 0.00069 28.7 5.2 40 175-215 9-48 (115)
262 KOG2676 Uncharacterized conser 53.1 13 0.00027 37.7 3.1 62 154-215 377-441 (478)
263 PF08506 Cse1: Cse1; InterPro 52.3 1.4E+02 0.0031 30.1 10.6 94 142-240 264-370 (370)
264 PF13001 Ecm29: Proteasome sta 52.3 60 0.0013 34.1 8.2 82 169-252 365-450 (501)
265 PF08216 CTNNBL: Catenin-beta- 51.7 20 0.00043 30.0 3.6 39 235-274 65-103 (108)
266 COG5656 SXM1 Importin, protein 51.4 51 0.0011 36.5 7.4 89 175-268 461-549 (970)
267 KOG1060 Vesicle coat complex A 51.2 64 0.0014 35.9 8.2 101 178-289 396-496 (968)
268 KOG0567 HEAT repeat-containing 50.1 2.6E+02 0.0056 27.4 13.1 57 260-332 220-276 (289)
269 KOG2199 Signal transducing ada 49.8 1.2E+02 0.0025 31.3 9.2 89 134-227 10-99 (462)
270 PF12463 DUF3689: Protein of u 49.4 2E+02 0.0043 28.4 10.8 135 208-346 1-180 (303)
271 KOG0413 Uncharacterized conser 49.4 58 0.0013 37.1 7.6 68 216-289 1006-1073(1529)
272 KOG2025 Chromosome condensatio 49.1 2.9E+02 0.0064 30.7 12.5 126 189-332 61-189 (892)
273 KOG1020 Sister chromatid cohes 48.6 2.3E+02 0.005 34.0 12.3 133 190-332 1137-1291(1692)
274 KOG2956 CLIP-associating prote 47.3 3.7E+02 0.008 28.4 13.1 144 132-290 330-478 (516)
275 KOG0211 Protein phosphatase 2A 46.7 3.4E+02 0.0074 30.3 13.1 135 182-332 526-660 (759)
276 KOG0567 HEAT repeat-containing 46.3 79 0.0017 30.8 7.2 148 174-332 67-245 (289)
277 KOG4151 Myosin assembly protei 46.1 89 0.0019 34.5 8.4 158 167-332 497-695 (748)
278 PF07814 WAPL: Wings apart-lik 45.7 1.7E+02 0.0038 29.2 10.0 83 185-268 33-116 (361)
279 PF13251 DUF4042: Domain of un 44.6 52 0.0011 30.0 5.5 69 177-248 104-177 (182)
280 KOG1943 Beta-tubulin folding c 43.9 3.6E+02 0.0077 31.3 12.6 144 174-332 341-496 (1133)
281 KOG2073 SAP family cell cycle 43.7 5.3E+02 0.012 29.2 14.6 142 174-319 190-377 (838)
282 PF12074 DUF3554: Domain of un 43.3 3.3E+02 0.0071 26.6 12.8 92 132-227 23-114 (339)
283 PF01365 RYDR_ITPR: RIH domain 43.0 94 0.002 28.2 7.1 104 205-318 32-153 (207)
284 PF12530 DUF3730: Protein of u 42.9 2.8E+02 0.0061 25.8 13.3 136 176-332 2-147 (234)
285 PF13001 Ecm29: Proteasome sta 42.4 1.6E+02 0.0034 30.9 9.5 161 120-290 260-444 (501)
286 KOG2549 Transcription initiati 41.7 3.8E+02 0.0082 28.8 11.8 140 102-243 193-368 (576)
287 KOG3665 ZYG-1-like serine/thre 41.3 2.7E+02 0.0059 30.7 11.3 162 162-330 501-691 (699)
288 PF08324 PUL: PUL domain; Int 41.1 1.2E+02 0.0025 28.5 7.7 127 145-277 122-262 (268)
289 KOG2137 Protein kinase [Signal 41.0 5.3E+02 0.012 28.5 14.2 117 147-270 403-520 (700)
290 PF14663 RasGEF_N_2: Rapamycin 40.8 96 0.0021 25.8 6.2 39 217-256 9-47 (115)
291 COG5240 SEC21 Vesicle coat com 40.1 1.7E+02 0.0037 31.7 9.0 93 146-243 444-553 (898)
292 KOG0413 Uncharacterized conser 40.1 1.3E+02 0.0028 34.5 8.5 119 188-327 945-1064(1529)
293 PF09758 FPL: Uncharacterised 39.6 1.9E+02 0.0041 25.6 8.1 123 203-331 13-143 (149)
294 PLN03076 ARF guanine nucleotid 39.1 4.1E+02 0.009 32.7 13.1 130 149-289 1108-1253(1780)
295 COG5116 RPN2 26S proteasome re 39.1 1E+02 0.0022 33.4 7.2 92 181-289 523-615 (926)
296 PF03130 HEAT_PBS: PBS lyase H 39.0 15 0.00032 22.6 0.7 26 190-226 1-26 (27)
297 KOG2274 Predicted importin 9 [ 38.8 3.8E+02 0.0082 30.5 11.7 138 148-289 545-689 (1005)
298 KOG1566 Conserved protein Mo25 38.4 4.2E+02 0.0091 26.5 11.8 140 187-332 138-282 (342)
299 PF01603 B56: Protein phosphat 38.1 4.4E+02 0.0096 26.8 11.8 97 151-248 108-207 (409)
300 PF12530 DUF3730: Protein of u 37.6 3.4E+02 0.0074 25.3 10.8 114 147-270 98-215 (234)
301 KOG0915 Uncharacterized conser 37.4 5.6E+02 0.012 31.0 13.2 157 113-289 941-1113(1702)
302 PF04388 Hamartin: Hamartin pr 37.1 4.9E+02 0.011 28.5 12.5 72 262-345 74-146 (668)
303 PF12783 Sec7_N: Guanine nucle 36.3 2.9E+02 0.0063 24.0 9.4 76 212-289 69-146 (168)
304 smart00802 UME Domain in UVSB 35.1 2.4E+02 0.0053 23.3 7.7 71 132-206 12-86 (107)
305 smart00567 EZ_HEAT E-Z type HE 33.8 54 0.0012 20.0 2.8 28 189-227 2-29 (30)
306 PF07923 N1221: N1221-like pro 33.4 78 0.0017 30.7 5.2 56 171-226 57-126 (293)
307 KOG1078 Vesicle coat complex C 32.7 4E+02 0.0086 29.9 10.6 94 146-244 423-531 (865)
308 PF11935 DUF3453: Domain of un 31.9 2.1E+02 0.0045 26.9 7.7 53 203-255 98-155 (239)
309 KOG0301 Phospholipase A2-activ 31.6 7.4E+02 0.016 27.3 15.3 75 181-257 551-628 (745)
310 smart00582 RPR domain present 31.0 1.7E+02 0.0037 23.9 6.3 60 179-248 5-64 (121)
311 PRK11187 replication initiatio 30.5 78 0.0017 28.9 4.2 85 6-128 86-172 (182)
312 PF12074 DUF3554: Domain of un 30.2 1.2E+02 0.0026 29.7 6.0 76 146-226 175-254 (339)
313 KOG2038 CAATT-binding transcri 29.6 8.6E+02 0.019 27.5 14.7 184 99-306 158-382 (988)
314 PF07923 N1221: N1221-like pro 29.5 95 0.0021 30.1 5.1 53 216-268 60-126 (293)
315 PF07571 DUF1546: Protein of u 29.2 2.5E+02 0.0055 22.3 6.7 53 186-243 18-76 (92)
316 PF04499 SAPS: SIT4 phosphatas 29.0 5.3E+02 0.011 27.1 10.7 120 111-248 17-151 (475)
317 PRK13159 cytochrome c-type bio 28.8 68 0.0015 28.6 3.5 42 1-46 1-42 (155)
318 PRK13150 cytochrome c-type bio 27.7 70 0.0015 28.6 3.4 41 1-45 1-41 (159)
319 PF04063 DUF383: Domain of unk 27.6 4.1E+02 0.0089 24.3 8.6 58 188-246 72-133 (192)
320 KOG4464 Signaling protein RIC- 27.0 7.5E+02 0.016 25.9 11.9 79 231-317 112-197 (532)
321 PF10274 ParcG: Parkin co-regu 26.7 3.3E+02 0.0072 24.9 7.7 41 175-215 81-121 (183)
322 PF08623 TIP120: TATA-binding 26.2 1.8E+02 0.004 26.2 5.9 76 147-226 41-116 (169)
323 COG5656 SXM1 Importin, protein 26.0 6E+02 0.013 28.6 10.5 93 192-289 434-528 (970)
324 PF13764 E3_UbLigase_R4: E3 ub 25.7 7.4E+02 0.016 27.9 11.5 130 127-256 116-269 (802)
325 KOG2933 Uncharacterized conser 25.4 5E+02 0.011 26.0 9.0 100 217-332 130-230 (334)
326 PF10193 Telomere_reg-2: Telom 25.3 3E+02 0.0064 22.9 6.7 100 131-241 3-111 (114)
327 PF12911 OppC_N: N-terminal TM 25.3 80 0.0017 22.3 2.8 23 4-26 13-35 (56)
328 PF06685 DUF1186: Protein of u 25.2 6.1E+02 0.013 24.3 12.7 98 185-304 53-152 (249)
329 KOG1078 Vesicle coat complex C 25.0 3.8E+02 0.0083 30.0 8.9 52 231-289 481-532 (865)
330 PF08389 Xpo1: Exportin 1-like 24.6 1.6E+02 0.0034 24.3 5.0 129 189-331 3-148 (148)
331 KOG2062 26S proteasome regulat 24.4 2.4E+02 0.0051 31.5 7.2 94 217-332 520-614 (929)
332 PF08713 DNA_alkylation: DNA a 24.0 1.7E+02 0.0036 26.2 5.3 35 181-215 162-196 (213)
333 KOG1525 Sister chromatid cohes 23.8 1.5E+02 0.0032 35.0 5.9 143 173-332 258-401 (1266)
334 KOG4653 Uncharacterized conser 23.6 4.4E+02 0.0096 29.9 9.1 70 179-249 732-801 (982)
335 PF12830 Nipped-B_C: Sister ch 22.9 5.5E+02 0.012 22.9 10.5 59 146-208 21-79 (187)
336 PF11894 DUF3414: Protein of u 22.9 2.3E+02 0.0049 34.6 7.5 59 187-245 577-639 (1691)
337 TIGR02302 aProt_lowcomp conser 21.7 1.5E+02 0.0033 33.4 5.4 21 104-124 519-539 (851)
338 PRK13165 cytochrome c-type bio 21.6 98 0.0021 27.7 3.2 41 1-45 1-41 (160)
339 TIGR00117 acnB aconitate hydra 21.5 4.4E+02 0.0095 29.8 8.7 102 129-244 23-125 (844)
340 PF04510 DUF577: Family of unk 21.0 6.3E+02 0.014 22.9 9.1 148 177-332 6-160 (174)
341 PF08454 RIH_assoc: RyR and IP 20.7 1.7E+02 0.0037 24.3 4.3 45 183-227 62-107 (109)
342 KOG2152 Sister chromatid cohes 20.6 4E+02 0.0086 29.7 7.9 68 218-285 334-402 (865)
343 PF03810 IBN_N: Importin-beta 20.6 1.6E+02 0.0035 21.6 3.9 32 174-205 14-47 (77)
344 PF10257 RAI16-like: Retinoic 20.5 8.5E+02 0.018 24.2 10.0 124 209-338 2-157 (353)
345 PF10274 ParcG: Parkin co-regu 20.3 6.7E+02 0.014 22.9 10.7 77 175-253 39-117 (183)
346 KOG4524 Uncharacterized conser 20.2 4.1E+02 0.0089 30.4 8.1 90 135-227 807-900 (1014)
No 1
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-39 Score=313.16 Aligned_cols=249 Identities=35% Similarity=0.495 Sum_probs=213.4
Q ss_pred CCCChHHHHhhHhhcC--CCCCcccch--------hcccCCCHHHHHHhHHHHHHHHHHcC---------CCCHHHHHHH
Q 017926 75 GFSSIDGMLQWAIGHS--DPAKLKETA--------QDVQRLSPSELKKRQMEIKELMEKLK---------TPSDAQLIQI 135 (363)
Q Consensus 75 ~~~~l~~LL~wsi~~s--~~~~~~~~~--------~~~~~~~~e~l~~r~~~Lkeal~~l~---------~~~d~~lmk~ 135 (363)
..++|+|+++|++.++ .|+++...- ...+ ++ +++++|+.++|..-+ +......|+.
T Consensus 10 ~~~~~~gl~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~ 84 (342)
T KOG2160|consen 10 RPPNQEGLLEWSLQLSQSLGSRPDIQISGDLGMAEAKLK--DE---KEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSM 84 (342)
T ss_pred cCccccchhhcccccccccCCCchhhhccchhhhhhhcc--Cc---ccchHHHHHHHHHhhhhhhhhcccchhHHHHHHh
Confidence 3688999999999998 554432110 0111 11 458889988886543 1223345555
Q ss_pred -HHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHH
Q 017926 136 -AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE 214 (363)
Q Consensus 136 -al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le 214 (363)
++..++.+++++++|+.||++|+++||+||||++|+++|||.+++.+|+++++++|+.|||+||+++||||++|+.+++
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E 164 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIE 164 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhh
Q 017926 215 LGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293 (363)
Q Consensus 215 ~G~lp~Ll~LL~s~~-~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~ 293 (363)
.|++++|+++|++++ ..++.||+||||++||||++++..|...+|+.+|..+|++++.+.++|+|+++|+++|+..
T Consensus 165 ~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~--- 241 (342)
T KOG2160|consen 165 LGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE--- 241 (342)
T ss_pred cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh---
Confidence 999999999999765 4678999999999999999999999999999999999999878999999999999999973
Q ss_pred cCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 294 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 294 ~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
+......+...++...++.+..+.+.+++|+++.++..
T Consensus 242 --~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~ 279 (342)
T KOG2160|consen 242 --DKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLS 279 (342)
T ss_pred --hhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHH
Confidence 55556677888998999999998999999999999763
No 2
>PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity. Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity [].
Probab=99.78 E-value=2.1e-19 Score=145.36 Aligned_cols=89 Identities=34% Similarity=0.533 Sum_probs=70.9
Q ss_pred CChHHHHhhHhhcCCCCCcccchhcccCCCHHHHHHhHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 017926 77 SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQ 155 (363)
Q Consensus 77 ~~l~~LL~wsi~~s~~~~~~~~~~~~~~~~~e~l~~r~~~Lkeal~~l-~~~~d~~lmk~al~~L~~~~~s~e~k~~AL~ 155 (363)
++|+|||||||+||.++...+.+ ...++.+ +|+++..++|..+ ++|+|+++||+++++|.+++.++|+|+.||+
T Consensus 3 ~~l~~LLkWsI~ns~~~~~~~~~-~~~~~~~----~~~~l~~~~L~~l~~~~sda~lMK~a~~vl~~~~~t~edk~~Ald 77 (92)
T PF08609_consen 3 PNLNGLLKWSIENSTTSASDAPP-SAEQPDE----ERRQLDPEALDALFGGPSDAELMKEAMEVLEDPEVTLEDKLIALD 77 (92)
T ss_pred HHHHHHHHHHHHcCCCCcccccc-CcCCchh----hhhhccHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 57999999999999544422221 1222222 3567777776665 5999999999999999999999999999999
Q ss_pred HHHHcccCCCchhhH
Q 017926 156 ELLILVEPIDNANDL 170 (363)
Q Consensus 156 ~L~~Lve~iDnAn~l 170 (363)
+|++|||+|||||++
T Consensus 78 ~le~LVE~IDNANnl 92 (92)
T PF08609_consen 78 NLEELVENIDNANNL 92 (92)
T ss_pred HHHHHHHcccccccC
Confidence 999999999999985
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=9e-17 Score=163.80 Aligned_cols=192 Identities=17% Similarity=0.198 Sum_probs=164.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-CCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~-iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~ 211 (363)
+...++.|.. ..++.-+..|...|.++..- -+..+.++..|.+|.++.||.+++..|+++|.|+||+++...|.+++.
T Consensus 111 v~~lV~~l~~-~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~ 189 (514)
T KOG0166|consen 111 VPRLVEFLSR-DDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDY 189 (514)
T ss_pred HHHHHHHHcc-CCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHH
Confidence 3445555543 23456678888888887664 477889999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 212 VLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 212 ~le~G~lp~Ll~LL~s~~~-~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
++++|++++|+.++..+.. ...+.+.|+||++|||..|.-..-.-...++.|..++++. |..+...|+|+|++|+.
T Consensus 190 vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~--D~~Vl~Da~WAlsyLsd- 266 (514)
T KOG0166|consen 190 VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST--DEEVLTDACWALSYLTD- 266 (514)
T ss_pred HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhc-
Confidence 9999999999999998765 6789999999999999644333333357889999999987 77899999999999996
Q ss_pred hhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+.++.++.+++.|+++.|+++|.+.+..++-.|+++++
T Consensus 267 ----g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiG 304 (514)
T KOG0166|consen 267 ----GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIG 304 (514)
T ss_pred ----CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcc
Confidence 56788999999999999999999999999999999998
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2e-16 Score=161.23 Aligned_cols=209 Identities=17% Similarity=0.160 Sum_probs=184.2
Q ss_pred HHHHHHc---CCCC-HHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHcccC-CCchhhHHhcCCHHHHHHhcCCCCHHH
Q 017926 118 KELMEKL---KTPS-DAQLIQIAIDDLNN--STLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDI 190 (363)
Q Consensus 118 keal~~l---~~~~-d~~lmk~al~~L~~--~~~s~e~k~~AL~~L~~Lve~-iDnAn~l~~lGgl~~Li~lL~s~~~~I 190 (363)
-+++..| +.|. +.+.++.++.+|.. ...+++....|+..+.+|.+. .+...-..+.|+.+.|+.+|.+.++.+
T Consensus 216 tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v 295 (514)
T KOG0166|consen 216 TWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKV 295 (514)
T ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCccc
Confidence 3556666 2344 45888888888754 345778899999999999965 467788889999999999999999999
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcC
Q 017926 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 269 (363)
Q Consensus 191 r~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~-~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s 269 (363)
+..|..++|+++..+....+.+++.|++|.|..++.++ ...++..|.|.||+|+.|++...++++++|-++.|+.+|++
T Consensus 296 ~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~ 375 (514)
T KOG0166|consen 296 VTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQT 375 (514)
T ss_pred ccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhc
Confidence 99999999999999999999999999999999999954 45578889999999999999999999999999999999998
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 270 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 270 ~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
. +.++|+.|+|+|++++.. ++++....+++.|+|+.++++|...|.++...++.++.
T Consensus 376 ~--ef~~rKEAawaIsN~ts~----g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~ 432 (514)
T KOG0166|consen 376 A--EFDIRKEAAWAISNLTSS----GTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLE 432 (514)
T ss_pred c--chHHHHHHHHHHHhhccc----CCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHH
Confidence 7 688999999999999984 67889999999999999999998889999888888877
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.66 E-value=7e-15 Score=168.66 Aligned_cols=191 Identities=12% Similarity=0.020 Sum_probs=167.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc
Q 017926 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (363)
Q Consensus 136 al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~ 215 (363)
..+.+++++ +.-.+..+.+.|..++-++.++..|...|++++|+.+|...+.++|..++|+|.+++.+++..++.+.+.
T Consensus 367 LV~Llr~k~-p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ 445 (2102)
T PLN03200 367 LVKLLKPRD-TKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGR 445 (2102)
T ss_pred HHHHhCCCC-CchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 444455444 2333577788898999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcC
Q 017926 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (363)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~ 295 (363)
|++|.|+++|.+++..++..|+++|+++..+++..+..+.++||++.|+++|.++ +.++|..|+|+|.+|+. .
T Consensus 446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~--~~~iqeeAawAL~NLa~-----~ 518 (2102)
T PLN03200 446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG--SQKAKEDSATVLWNLCC-----H 518 (2102)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhC-----C
Confidence 9999999999999989999999999999999888899999999999999999987 67899999999999995 2
Q ss_pred CCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhh
Q 017926 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFC 334 (363)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~ 334 (363)
.+..+..+.+.|+++.|+++|++++...|+.++.+|..+
T Consensus 519 ~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nL 557 (2102)
T PLN03200 519 SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKL 557 (2102)
T ss_pred cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 223344455789999999999999999999999998843
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.63 E-value=1.6e-14 Score=165.73 Aligned_cols=185 Identities=11% Similarity=0.032 Sum_probs=157.5
Q ss_pred CHHHHHHHHHHHHHcccC-CCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHh
Q 017926 146 SLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~-iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~L 224 (363)
+.|.+..+...|.+++.+ .++...+...||+++|+++|.+++..+|..|+|+|++++..|+..+..+++.|++|+|+++
T Consensus 417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L 496 (2102)
T PLN03200 417 TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL 496 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 468899999999999966 6778899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhh-----------h
Q 017926 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL-----------E 293 (363)
Q Consensus 225 L~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~-----------~ 293 (363)
|.+++..++..|+|+|+|++.+.+..+..+.++|+++.|+++|++. +.+.|..|++.|.+|+.... .
T Consensus 497 L~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl 574 (2102)
T PLN03200 497 LETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG--GPKGQEIAAKTLTKLVRTADAATISQLTALLL 574 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 9999999999999999999987555555666889999999999987 67899999999999964210 0
Q ss_pred cCCCC---------------------cchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 294 NMHKV---------------------EPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 294 ~~~~~---------------------~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
..++. ........|.++.|+++|++++...++.|+.+|.
T Consensus 575 sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLs 634 (2102)
T PLN03200 575 GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLA 634 (2102)
T ss_pred CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 00000 0111224689999999999999999999999988
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.59 E-value=5.2e-15 Score=143.14 Aligned_cols=171 Identities=18% Similarity=0.208 Sum_probs=142.0
Q ss_pred HHHHHHHcccCC-CchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCH-
Q 017926 153 ALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV- 230 (363)
Q Consensus 153 AL~~L~~Lve~i-DnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~- 230 (363)
|...|.....-- +.-.-.+..|.+|.++++|.+++.+||.+|.|+||+++.+.+.|++.+++.|++.+|+.++.++..
T Consensus 135 AaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ 214 (526)
T COG5064 135 AAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIH 214 (526)
T ss_pred HHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccch
Confidence 334444433332 233445668999999999999999999999999999999999999999999999999999998665
Q ss_pred -HHHHHHHHHHHHHhcC-Ccc-cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCC
Q 017926 231 -EEAVKALYTVSSLIRN-NLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 307 (363)
Q Consensus 231 -~v~~kAL~ALSsLiR~-~~~-a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g 307 (363)
++-+.+.|.||++||+ +|+ ....+ ...+++|..++.+. |..+-..|+|+|++|.. ...+..+.+.+.|
T Consensus 215 ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~--D~evlvDA~WAiSYlsD-----g~~E~i~avld~g 285 (526)
T COG5064 215 ISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSR--DPEVLVDACWAISYLSD-----GPNEKIQAVLDVG 285 (526)
T ss_pred HHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhc--CHHHHHHHHHHHHHhcc-----CcHHHHHHHHhcC
Confidence 6678999999999998 333 22222 24688999999886 66788999999999985 4557788899999
Q ss_pred cHHHHHHhccCCChhHHHHHHHHHH
Q 017926 308 FLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 308 ~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
..+.|+++|.+++..+|-.++++++
T Consensus 286 ~~~RLvElLs~~sa~iqtPalR~vG 310 (526)
T COG5064 286 IPGRLVELLSHESAKIQTPALRSVG 310 (526)
T ss_pred CcHHHHHHhcCccccccCHHHHhhc
Confidence 9999999999999999999999998
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.58 E-value=6e-15 Score=142.67 Aligned_cols=210 Identities=17% Similarity=0.126 Sum_probs=181.4
Q ss_pred HHHHHcC-C---CCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHcccCC-CchhhHHhcCCHHHHHHhcCCCCHHHH
Q 017926 119 ELMEKLK-T---PSDAQLIQIAIDDLNN--STLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIR 191 (363)
Q Consensus 119 eal~~l~-~---~~d~~lmk~al~~L~~--~~~s~e~k~~AL~~L~~Lve~i-DnAn~l~~lGgl~~Li~lL~s~~~~Ir 191 (363)
+.++.+. + |.+-..|.+++.+|.. .+.++|....|+.++.++.+-. +....+...|--+-|+++|.|++..|+
T Consensus 223 WtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iq 302 (526)
T COG5064 223 WTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQ 302 (526)
T ss_pred HHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcccccc
Confidence 3455552 1 3356778888888754 3457889999999999998875 345566677888899999999999999
Q ss_pred HHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCC
Q 017926 192 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271 (363)
Q Consensus 192 ~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~ 271 (363)
..|.+.+|+++..++...+.++.+|+++.+..+|+++...+|..|.|.||+|..++....+++++.+-+++|+++|.+.
T Consensus 303 tPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a- 381 (526)
T COG5064 303 TPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA- 381 (526)
T ss_pred CHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-
Confidence 9999999999999888788889999999999999998889999999999999999999999999999999999999986
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 272 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 272 ~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+-++|..|+|++++..+..+ ..|+.+..++++|+++.|.++|...|..+.|.++.|+.
T Consensus 382 -e~k~kKEACWAisNatsgg~--~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~e 439 (526)
T COG5064 382 -EYKIKKEACWAISNATSGGL--NRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIE 439 (526)
T ss_pred -HHHHHHHHHHHHHhhhcccc--CCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHH
Confidence 78999999999999987542 45788999999999999999999888888888888876
No 9
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.54 E-value=1.9e-13 Score=112.07 Aligned_cols=118 Identities=25% Similarity=0.381 Sum_probs=111.0
Q ss_pred hHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 017926 169 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 248 (363)
Q Consensus 169 ~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~ 248 (363)
.+.+.|+++.++++|.++++.+|..|+++|++++.++|.....+++.|++|.|++++.++++.++..++++|++++.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 46789999999999999999999999999999999999999999999999999999999889999999999999999988
Q ss_pred ccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 249 ~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
.....+.+.|+++.|+++++++ +.+++..+++++.+|+
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~--~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSS--NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcC--CHHHHHHHHHHHHHhh
Confidence 8888888999999999999987 6789999999999987
No 10
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=3e-12 Score=125.04 Aligned_cols=179 Identities=17% Similarity=0.185 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcC--cHHHHHHhh
Q 017926 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMV 225 (363)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G--~lp~Ll~LL 225 (363)
..+-.+...|..+.+.-+|.+.++..||+|.|+.++.+.++++|.+++.+|++++-. ...++.+.+.+ .+|.|++|.
T Consensus 182 rvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lm 260 (550)
T KOG4224|consen 182 RVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLM 260 (550)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHH
Confidence 445678999999999999999999999999999999999999999999999999863 45677777887 999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
.++++.++-.|-.||.++..+ ...+..+.++|+++.++++|+++ ..++....++.|.++.. +|-+...+.+
T Consensus 261 d~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~--~~plilasVaCIrnisi------hplNe~lI~d 331 (550)
T KOG4224|consen 261 DDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSP--MGPLILASVACIRNISI------HPLNEVLIAD 331 (550)
T ss_pred hCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCc--chhHHHHHHHHHhhccc------ccCcccceec
Confidence 999999999999999999765 45688899999999999999987 45677788999999985 4555567789
Q ss_pred CCcHHHHHHhccCC-ChhHHHHHHHHHHhhcc
Q 017926 306 RFFLKSVVDLTASA-DLDLQEKVFLEHVFCGL 336 (363)
Q Consensus 306 ~g~v~~Lv~lL~~~-d~~lqE~al~aL~~~~~ 336 (363)
.|+++.||.+|+.+ +.+.|-+|..+|+.++.
T Consensus 332 agfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 332 AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred ccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 99999999999987 55699999999994443
No 11
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.29 E-value=4.9e-11 Score=97.61 Aligned_cols=115 Identities=18% Similarity=0.165 Sum_probs=105.0
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
.+++.|+++.|++++++++..++..++++|++++.+++.....+.+.|+++.|..+|.++ +.+++..+++++++|+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~- 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAA- 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHcc-
Confidence 467899999999999999889999999999999999899999999999999999999986 67899999999999995
Q ss_pred hhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
..+.....+.+.|+++.+++++..++..++++++.+|.
T Consensus 79 ----~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~ 116 (120)
T cd00020 79 ----GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALS 116 (120)
T ss_pred ----CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34456777888999999999999999999999999987
No 12
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.4e-11 Score=118.80 Aligned_cols=180 Identities=13% Similarity=0.119 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhc
Q 017926 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~ 226 (363)
.+-...+-+++-.+.-+..|.--+.+++|+.+|+..+.++..++|..+..||.+++.- ...+..+...|++.+|.+|-+
T Consensus 99 ~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLak 177 (550)
T KOG4224|consen 99 KCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAK 177 (550)
T ss_pred hhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcc
Confidence 3445667778888888889999999999999999999999999999999999999975 557778888999999999988
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhC
Q 017926 227 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR 306 (363)
Q Consensus 227 s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~ 306 (363)
+.+..++..+..||+++. |...+++.++..||++.|+.++++. +..+|-.++..|++++. +...+..+.+.
T Consensus 178 skdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~--d~dvqyycttaisnIaV------d~~~Rk~Laqa 248 (550)
T KOG4224|consen 178 SKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSG--DLDVQYYCTTAISNIAV------DRRARKILAQA 248 (550)
T ss_pred cchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccC--ChhHHHHHHHHhhhhhh------hHHHHHHHHhc
Confidence 888899999999999996 4567889999999999999999997 55689999999999985 55677888887
Q ss_pred C--cHHHHHHhccCCChhHHHHHHHHHHhhcc
Q 017926 307 F--FLKSVVDLTASADLDLQEKVFLEHVFCGL 336 (363)
Q Consensus 307 g--~v~~Lv~lL~~~d~~lqE~al~aL~~~~~ 336 (363)
+ +++.|+++...+++.++-.|..||...+.
T Consensus 249 ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas 280 (550)
T KOG4224|consen 249 EPKLVPALVDLMDDGSDKVKCQAGLALRNLAS 280 (550)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHhhhcc
Confidence 7 99999999999999999999999884444
No 13
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.07 E-value=2.4e-09 Score=102.07 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=120.3
Q ss_pred HhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc
Q 017926 171 SKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (363)
Q Consensus 171 ~~lGgl~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~ 249 (363)
...+.++.|+.+|+ +.+|.++..|..++++.+. .|..|+.+.+.|+++.+..+|.++++.++.+|+.||.++.-+ .+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence 34567889999997 5689999999999999875 799999999999999999999999999999999999999765 44
Q ss_pred cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHH
Q 017926 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFL 329 (363)
Q Consensus 250 a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~ 329 (363)
++..+.. -+-.++.....++ .+..+|..++.+|.+|+. ..+....+. +.++.++.+|.+++..+|.+++.
T Consensus 87 n~~~Ik~-~i~~Vc~~~~s~~-lns~~Q~agLrlL~nLtv------~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk 156 (254)
T PF04826_consen 87 NQEQIKM-YIPQVCEETVSSP-LNSEVQLAGLRLLTNLTV------TNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLK 156 (254)
T ss_pred hHHHHHH-HHHHHHHHHhcCC-CCCHHHHHHHHHHHccCC------CcchhhhHH--hhHHHHHHHHHcCChHHHHHHHH
Confidence 5555433 3334444444443 356789999999999985 233334443 47899999999999999999999
Q ss_pred HHH
Q 017926 330 EHV 332 (363)
Q Consensus 330 aL~ 332 (363)
+|.
T Consensus 157 ~L~ 159 (254)
T PF04826_consen 157 VLV 159 (254)
T ss_pred HHH
Confidence 988
No 14
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1e-08 Score=100.38 Aligned_cols=168 Identities=17% Similarity=0.141 Sum_probs=135.9
Q ss_pred HHHHHHcccCCCchhhHHhcCCHHHHHHhc--CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHH
Q 017926 154 LQELLILVEPIDNANDLSKLGGLSVLVGQL--NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE 231 (363)
Q Consensus 154 L~~L~~Lve~iDnAn~l~~lGgl~~Li~lL--~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~ 231 (363)
.+..-+.+++....-++..+ +....+ .+.+.+=+..|.--|-..+.+ -.....++..|++.+|+.++++++.+
T Consensus 65 ~e~~k~~~~~~~~~~~~~~~----~~~~~~~~~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~ 139 (342)
T KOG2160|consen 65 TEDQKDFVEDMKVISDVMSM----IPIVILNSSSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAE 139 (342)
T ss_pred hhhhhhhcccchhHHHHHHh----hhhhccCcccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHH
Confidence 33344566666666777766 223333 345788888999999999874 44666788999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHH
Q 017926 232 EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS 311 (363)
Q Consensus 232 v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~ 311 (363)
+|.+|++-|+.+++|||..|..+++.||++.|+..+.++. +..+|.||.+++++|.. .++.....|...+....
T Consensus 140 lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~-~~~~r~kaL~AissLIR-----n~~~g~~~fl~~~G~~~ 213 (342)
T KOG2160|consen 140 LRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDD-PNTVRTKALFAISSLIR-----NNKPGQDEFLKLNGYQV 213 (342)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCC-CchHHHHHHHHHHHHHh-----cCcHHHHHHHhcCCHHH
Confidence 9999999999999999999999999999999999999764 56789999999999997 46666677777777899
Q ss_pred HHHhccC--CChhHHHHHHHHHH
Q 017926 312 VVDLTAS--ADLDLQEKVFLEHV 332 (363)
Q Consensus 312 Lv~lL~~--~d~~lqE~al~aL~ 332 (363)
|.++|++ .+..++.+++.-+.
T Consensus 214 L~~vl~~~~~~~~lkrK~~~Ll~ 236 (342)
T KOG2160|consen 214 LRDVLQSNNTSVKLKRKALFLLS 236 (342)
T ss_pred HHHHHHcCCcchHHHHHHHHHHH
Confidence 9999998 46777787776655
No 15
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.04 E-value=1.9e-08 Score=107.62 Aligned_cols=170 Identities=16% Similarity=0.139 Sum_probs=143.0
Q ss_pred HHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCH
Q 017926 151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV 230 (363)
Q Consensus 151 ~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~ 230 (363)
..++--|..+.++..+-..+.+.|++++|+++|++++.++...+..+|..++-. ++++..+.+.|++|+|++++.+++.
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~ 345 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENE 345 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCH
Confidence 346667889999999999999999999999999999999999999999999974 5589999999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHH
Q 017926 231 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310 (363)
Q Consensus 231 ~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~ 310 (363)
.+...++..|.|+.- ++..+..+++.|.++.|+.+|.+++ .+.-+..++++|+. ++..+..|...+.++
T Consensus 346 ~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~----~~~val~iLy~LS~------dd~~r~~f~~TdcIp 414 (708)
T PF05804_consen 346 DLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPN----FREVALKILYNLSM------DDEARSMFAYTDCIP 414 (708)
T ss_pred HHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCc----hHHHHHHHHHHhcc------CHhhHHHHhhcchHH
Confidence 888889999999864 5677899999999999999998752 45668889999984 667788888889999
Q ss_pred HHHHhccCC-ChhHHHHHHHHHH
Q 017926 311 SVVDLTASA-DLDLQEKVFLEHV 332 (363)
Q Consensus 311 ~Lv~lL~~~-d~~lqE~al~aL~ 332 (363)
.++++|-.. +..++..++..+.
T Consensus 415 ~L~~~Ll~~~~~~v~~eliaL~i 437 (708)
T PF05804_consen 415 QLMQMLLENSEEEVQLELIALLI 437 (708)
T ss_pred HHHHHHHhCCCccccHHHHHHHH
Confidence 999987654 5555433333333
No 16
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.04 E-value=1.9e-08 Score=104.51 Aligned_cols=189 Identities=15% Similarity=0.126 Sum_probs=157.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc
Q 017926 136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (363)
Q Consensus 136 al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~ 215 (363)
.+..|++. +.|....+.+.|..+.+..+-..- .-+..+.|...|.|+++.||..+++.|+.+++++....+.+.+.
T Consensus 43 lf~~L~~~--~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTS--NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhc--ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 44445533 556677778888888887754444 33456778889999999999999999999999998888888899
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcC
Q 017926 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (363)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~ 295 (363)
+.++.++.++.+++.++...|+.+|+.++++ ++..+.++..++...|..++..+ +..+|.++..++..++. .
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~-----~ 190 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIAS-----H 190 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHh-----c
Confidence 9999999999999999999999999999985 56677788888999999999875 34578899999999986 4
Q ss_pred CCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhcc
Q 017926 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCGL 336 (363)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~~ 336 (363)
.++..+.+.+.|+++.++..|.++|.-+|..++..+...+.
T Consensus 191 S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 191 SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 66778888899999999999999999999999998884444
No 17
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=1e-07 Score=92.87 Aligned_cols=172 Identities=10% Similarity=0.125 Sum_probs=133.8
Q ss_pred CCchhhHHhcCCHHHHHHhcCC-CCHHHH---HHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcC--CCHHHHHHHH
Q 017926 164 IDNANDLSKLGGLSVLVGQLNH-PDTDIR---KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS--SFVEEAVKAL 237 (363)
Q Consensus 164 iDnAn~l~~lGgl~~Li~lL~s-~~~~Ir---~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s--~~~~v~~kAL 237 (363)
.+....+...||+..|++++.+ .+.+.| ..++..|..++. |+.+...+++.|+++.++.++.. +++.+...++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 3445667779999999999975 555555 667777777775 67799999999999999998863 4567778888
Q ss_pred HHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhcc
Q 017926 238 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA 317 (363)
Q Consensus 238 ~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~ 317 (363)
-+||-++=-.|+.-..|++.||-...++.|+.....-.+|+.++++|.+++.. ..+++..+...|+ ..|+..-+
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-----s~~~~~~~l~~Gi-E~Li~~A~ 425 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-----SAENRTILLANGI-EKLIRTAK 425 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-----hhhccchHHhccH-HHHHHHHH
Confidence 88998877789999999999999999999986544567999999999999973 4456667776554 77777777
Q ss_pred CCChhHHHHHHHHHHhhcccccCchhhhhH
Q 017926 318 SADLDLQEKVFLEHVFCGLVFCTCPCIVRG 347 (363)
Q Consensus 318 ~~d~~lqE~al~aL~~~~~~~~~~~~~~r~ 347 (363)
..+.++...+-.||. ..-|.-..|+
T Consensus 426 ~~h~tce~~akaALR-----DLGc~v~lre 450 (461)
T KOG4199|consen 426 ANHETCEAAAKAALR-----DLGCDVYLRE 450 (461)
T ss_pred hcCccHHHHHHHHHH-----hcCcchhhHH
Confidence 778888877777766 3335555543
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.92 E-value=1.1e-07 Score=99.06 Aligned_cols=194 Identities=18% Similarity=0.156 Sum_probs=159.0
Q ss_pred HHHHHHHHHcCCCC-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCc-hhhHHhcCCHHHHHHhcCCCCHHHHH
Q 017926 115 MEIKELMEKLKTPS-DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRK 192 (363)
Q Consensus 115 ~~Lkeal~~l~~~~-d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDn-An~l~~lGgl~~Li~lL~s~~~~Ir~ 192 (363)
+-|+..++.+...+ ..+.+.....-|.++ ++..|..++..+..+++..+. +.-+...+.++.++.+|.+++.++..
T Consensus 60 ~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~ 137 (503)
T PF10508_consen 60 DILKRLLSALSPDSLLPQYQPFLQRGLTHP--SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAK 137 (503)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHH
Confidence 44555665443322 234444455556554 468888899999999888766 44556678899999999999999999
Q ss_pred HHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCc
Q 017926 193 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF 272 (363)
Q Consensus 193 ~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~ 272 (363)
.|+.+|..++.+.+.. +.+++.+.++.|.+++..++..+|.+++..+..+.+.++.......+.|-++.++..+.++
T Consensus 138 ~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d-- 214 (503)
T PF10508_consen 138 AAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD-- 214 (503)
T ss_pred HHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc--
Confidence 9999999999866554 4577888899999999987888899999999999999999998899999999999999985
Q ss_pred cHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC
Q 017926 273 EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 319 (363)
Q Consensus 273 ~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~ 319 (363)
|.-+|..++-++..|+. .++..+.+.+.|+++.|++++...
T Consensus 215 DiLvqlnalell~~La~------~~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 215 DILVQLNALELLSELAE------TPHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred cHHHHHHHHHHHHHHHc------ChhHHHHHHhCCHHHHHHHHHhcc
Confidence 88899999999999994 567788999999999999999865
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.80 E-value=4.9e-07 Score=86.27 Aligned_cols=185 Identities=19% Similarity=0.122 Sum_probs=139.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHH
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
+-+++.+..|... .++.-+..++-.+.......-+.+-+.+.||++++..+|+++++.+|..|.++|.+++.+ .+.|.
T Consensus 12 ~~l~~Ll~lL~~t-~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~~ 89 (254)
T PF04826_consen 12 QELQKLLCLLEST-EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DENQE 89 (254)
T ss_pred HHHHHHHHHHhcC-CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhHH
Confidence 3345555555532 244556666666666655566677788899999999999999999999999999999864 55777
Q ss_pred HHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 211 QVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s~--~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
.+-. .++.+++...+. +.+++..++.+|.++...+ ..+..+. +.++.+.++|.+. +.++|..++.+|.+|+
T Consensus 90 ~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~--~~i~~ll~LL~~G--~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 90 QIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLA--NYIPDLLSLLSSG--SEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHH--hhHHHHHHHHHcC--ChHHHHHHHHHHHHhc
Confidence 6543 588888866654 4578899999999997653 3355554 5788899999987 5678999999999998
Q ss_pred hhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHHHHHHHH
Q 017926 289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKVFLE 330 (363)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~a 330 (363)
. ++.....+....++..++.++... +.++...++.-
T Consensus 163 ~------np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~ 199 (254)
T PF04826_consen 163 E------NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTF 199 (254)
T ss_pred c------CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHH
Confidence 4 777788888889999999999875 45544444433
No 20
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.76 E-value=2.8e-07 Score=98.87 Aligned_cols=158 Identities=23% Similarity=0.253 Sum_probs=122.2
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL 225 (363)
+.+-...++.-|..|.-..+|...+...|.+++|++++.+++.+++..|.++|.+++. ++..+..+++.|++|+|+.+|
T Consensus 303 n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL 381 (708)
T PF05804_consen 303 NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELL 381 (708)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHh
Confidence 5677777888888888888999999999999999999999999999999999999997 567899999999999999999
Q ss_pred cCCCH-HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHH
Q 017926 226 KSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (363)
Q Consensus 226 ~s~~~-~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~ 304 (363)
.+++. .+..+.+|.||. .+.+...|...+.++.|+.++-+.+ +.++...++.++.+|+. ++...+.+.
T Consensus 382 ~d~~~~~val~iLy~LS~----dd~~r~~f~~TdcIp~L~~~Ll~~~-~~~v~~eliaL~iNLa~------~~rnaqlm~ 450 (708)
T PF05804_consen 382 KDPNFREVALKILYNLSM----DDEARSMFAYTDCIPQLMQMLLENS-EEEVQLELIALLINLAL------NKRNAQLMC 450 (708)
T ss_pred CCCchHHHHHHHHHHhcc----CHhhHHHHhhcchHHHHHHHHHhCC-CccccHHHHHHHHHHhc------CHHHHHHHH
Confidence 97653 334455555544 3567889998999999999876542 45567778888888885 333344444
Q ss_pred hCCcHHHHHHh
Q 017926 305 DRFFLKSVVDL 315 (363)
Q Consensus 305 ~~g~v~~Lv~l 315 (363)
+.|.++.|++.
T Consensus 451 ~g~gL~~L~~r 461 (708)
T PF05804_consen 451 EGNGLQSLMKR 461 (708)
T ss_pred hcCcHHHHHHH
Confidence 44444444433
No 21
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.69 E-value=2.2e-07 Score=96.78 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=127.9
Q ss_pred CCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 017926 164 IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 243 (363)
Q Consensus 164 iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsL 243 (363)
++++..+-..-....+....-..+.+.+..|+.|+-+++..-...+.-+-...+..+|++++..++..++..++.||+|+
T Consensus 367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~Nl 446 (678)
T KOG1293|consen 367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNL 446 (678)
T ss_pred hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHH
Confidence 66666666544334444444567888888888888877754333333333346889999999888888999999999999
Q ss_pred hcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhH
Q 017926 244 IRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDL 323 (363)
Q Consensus 244 iR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~l 323 (363)
|-.+.+-+..|++.||++.|...+.++ +..+|.++.|+++++... .++..+..+...-....++.+...+|..+
T Consensus 447 Vmefs~~kskfl~~ngId~l~s~~~~~--~~n~r~~~~~~Lr~l~f~----~de~~k~~~~~ki~a~~i~~l~nd~d~~V 520 (678)
T KOG1293|consen 447 VMEFSNLKSKFLRNNGIDILESMLTDP--DFNSRANSLWVLRHLMFN----CDEEEKFQLLAKIPANLILDLINDPDWAV 520 (678)
T ss_pred HhhcccHHHHHHHcCcHHHHHHHhcCC--CchHHHHHHHHHHHHHhc----chHHHHHHHHHHhhHHHHHHHHhCCCHHH
Confidence 999999999999999999999999987 566899999999999973 45555555555556677778888889999
Q ss_pred HHHHHHHHH
Q 017926 324 QEKVFLEHV 332 (363)
Q Consensus 324 qE~al~aL~ 332 (363)
||+++..|.
T Consensus 521 qeq~fqllR 529 (678)
T KOG1293|consen 521 QEQCFQLLR 529 (678)
T ss_pred HHHHHHHHH
Confidence 999999988
No 22
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.9e-06 Score=92.02 Aligned_cols=194 Identities=16% Similarity=0.155 Sum_probs=149.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC--CCchhhHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhc
Q 017926 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP--IDNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQ 203 (363)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~--iDnAn~l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~~Lgt~aq 203 (363)
.+..-.||+.+.-|.+.+ ++-..+.|+-+|.+++-. .|.-.-|----.+|.|+.+|++ .+.+|...||++|.+++.
T Consensus 163 ~sasSk~kkLL~gL~~~~-Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e 241 (1051)
T KOG0168|consen 163 SSASSKAKKLLQGLQAES-DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE 241 (1051)
T ss_pred ccchHHHHHHHHhccccC-ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 345568999999998765 555565555555543321 1111122222356788899987 479999999999999999
Q ss_pred cChHHHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 017926 204 NNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (363)
Q Consensus 204 NNp~~Q~~~le~G~lp~Ll~LL~-s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~ 282 (363)
--|.+-..++++++||.|+.-|. -+-..++..+|.||--|-|.|+ .++.++||+...+..|.=- ++-.|++|+.
T Consensus 242 vlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFF--Si~aQR~Ala 316 (1051)
T KOG0168|consen 242 VLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFF--SIHAQRVALA 316 (1051)
T ss_pred hccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHH--HHHHHHHHHH
Confidence 99999999999999999996554 4557889999999999999887 5678999999888887644 4568999999
Q ss_pred HHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 283 lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
...|.|.. ..++....+. ..+|.|..+|+..|....|.++.|+-
T Consensus 317 iaaN~Cks----i~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ 360 (1051)
T KOG0168|consen 317 IAANCCKS----IRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLT 360 (1051)
T ss_pred HHHHHHhc----CCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHH
Confidence 99999974 3455555554 47899999999999999999888865
No 23
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=1.4e-05 Score=78.35 Aligned_cols=186 Identities=13% Similarity=0.067 Sum_probs=144.7
Q ss_pred HhhcCCCCHHHHHHHHHHHHHcccCC----------CchhhHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhccChH
Q 017926 139 DLNNSTLSLEDSQRALQELLILVEPI----------DNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPL 207 (363)
Q Consensus 139 ~L~~~~~s~e~k~~AL~~L~~Lve~i----------DnAn~l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~~Lgt~aqNNp~ 207 (363)
+|+..+.+ +....+.+.+.-|+-+. ..|+.|.+.||+..|++.|+. -+|++...++..|++++-+|+.
T Consensus 197 ~l~~~gk~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~ 275 (461)
T KOG4199|consen 197 VLNREGKT-RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEI 275 (461)
T ss_pred HHcccCcc-HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHH
Confidence 44444444 33344556666665543 458999999999999999964 5799999999999999999887
Q ss_pred HHHHHHHcCcHHHHHHhhcCCC-HHHH---HHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 017926 208 VQKQVLELGALSKLMKMVKSSF-VEEA---VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 283 (363)
Q Consensus 208 ~Q~~~le~G~lp~Ll~LL~s~~-~~v~---~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~l 283 (363)
||. +.+.||+..|+.++.+.+ ...| ..++.-|+.+. ++......+++.||.+.|+.++....+++.+-..++..
T Consensus 276 C~~-I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~ 353 (461)
T KOG4199|consen 276 CKS-IAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAI 353 (461)
T ss_pred HHH-HHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHH
Confidence 776 689999999999999854 3444 45677777765 56778899999999999999976555677788888888
Q ss_pred HHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC--ChhHHHHHHHHHH
Q 017926 284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKVFLEHV 332 (363)
Q Consensus 284 L~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~lqE~al~aL~ 332 (363)
++-||- -.|+....+++.|.-...++-++.. ...+|..+..++.
T Consensus 354 i~~l~L-----R~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IR 399 (461)
T KOG4199|consen 354 ISILCL-----RSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIR 399 (461)
T ss_pred HHHHHh-----cCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 888885 3567777888999999889888753 5678888887776
No 24
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.42 E-value=6.7e-06 Score=80.36 Aligned_cols=181 Identities=18% Similarity=0.163 Sum_probs=130.5
Q ss_pred CCHHHHHHHHHHHHHcccCC-CchhhHHhcC------CHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCc
Q 017926 145 LSLEDSQRALQELLILVEPI-DNANDLSKLG------GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGA 217 (363)
Q Consensus 145 ~s~e~k~~AL~~L~~Lve~i-DnAn~l~~lG------gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~ 217 (363)
...+-..-.|--+.+++.+. ....-|.... -+.+++++++++|.-++..|+.+++.+....+....... .+.
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~ 147 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEA 147 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHH
Confidence 34566666777777777665 5666666632 589999999999999999999999999887665555433 567
Q ss_pred HHHHHHhhcCC----CHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhh-----cCCCccHHHHHHHHHHHHHHh
Q 017926 218 LSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL-----GNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 218 lp~Ll~LL~s~----~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL-----~s~~~~~klr~kA~~lL~~L~ 288 (363)
++.+++.+++. +.+++.-++.+++.++|. +..+..|.+.||++.|..++ .+.+.+..++=.+++.+--|+
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS 226 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS 226 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh
Confidence 89999888863 234578899999999985 77899999999999999999 344456778888888888887
Q ss_pred hhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHHHHHHHHHHh
Q 017926 289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKVFLEHVF 333 (363)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~aL~~ 333 (363)
. +++..+.+.+.++++.|+++++.. ...+.--++.++..
T Consensus 227 F------~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~N 266 (312)
T PF03224_consen 227 F------EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRN 266 (312)
T ss_dssp T------SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHH
T ss_pred c------CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 5 567778888899999999999865 55666666777663
No 25
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=98.21 E-value=2.1e-05 Score=75.05 Aligned_cols=102 Identities=13% Similarity=0.101 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHH
Q 017926 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 265 (363)
Q Consensus 187 ~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~ 265 (363)
+..+...|..+|--++-.+|.+|..|..+.++..|+.+|.. ..+.++..++.+|.+++.++|.++..|-+.+|+..+..
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 34456778999999999999999999999999999999954 45788999999999999999999999999999999999
Q ss_pred hhcCCCccHHHHHHHHHHHHHHh
Q 017926 266 ILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 266 lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
++++.+.+..+|.|.+-++.-..
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHH
Confidence 99999888889999886665444
No 26
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.18 E-value=4.3e-06 Score=57.16 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=38.4
Q ss_pred ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 017926 205 NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 245 (363)
Q Consensus 205 Np~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR 245 (363)
||+.++.+++.|++|+|+++|++++..++..|+|||++|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 57888999999999999999999999999999999999975
No 27
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=3.9e-05 Score=81.70 Aligned_cols=182 Identities=21% Similarity=0.235 Sum_probs=146.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCC------c-----------hhhHHhc-CCHHHHHHhcCCCCHHHHHH
Q 017926 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPID------N-----------ANDLSKL-GGLSVLVGQLNHPDTDIRKI 193 (363)
Q Consensus 132 lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iD------n-----------An~l~~l-Ggl~~Li~lL~s~~~~Ir~~ 193 (363)
-|+-.+.+|...-.++|-.-.+||.+..++..-| + |..|++. +-+..++..+...+=.||.+
T Consensus 62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~ 141 (970)
T KOG0946|consen 62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLY 141 (970)
T ss_pred ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhH
Confidence 3677777777666666777777777777665543 2 4556655 45667778899999999999
Q ss_pred HHHHHHHHhcc-ChHHHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCC
Q 017926 194 SAWILGKASQN-NPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271 (363)
Q Consensus 194 Aa~~Lgt~aqN-Np~~Q~~~le~-G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~ 271 (363)
|...|.++..+ -++.|+.++.. -+|..|+.+|.+.-..+|-.+++-|+.++|+++.-|+.+.=.+.+.-|..++....
T Consensus 142 aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG 221 (970)
T KOG0946|consen 142 AIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG 221 (970)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999998875 45889988877 78999999999987888999999999999999887777777799999999987542
Q ss_pred -c-cHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccC
Q 017926 272 -F-EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 318 (363)
Q Consensus 272 -~-~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~ 318 (363)
. .--+...+++++.+|.. .+..+...|.+.+.+++|..+|..
T Consensus 222 g~dGgIVveDCL~ll~NLLK-----~N~SNQ~~FrE~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 222 GLDGGIVVEDCLILLNNLLK-----NNISNQNFFREGSYIPRLLKLLSV 265 (970)
T ss_pred CCCCcchHHHHHHHHHHHHh-----hCcchhhHHhccccHHHHHhhcCc
Confidence 1 22477899999999996 477889999999999999999874
No 28
>PRK09687 putative lyase; Provisional
Probab=98.18 E-value=5.5e-05 Score=73.20 Aligned_cols=166 Identities=10% Similarity=0.033 Sum_probs=89.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~ 212 (363)
+++.+..|.+. +...|..|...|..+=+ -..++.+..+++++++.+|..|+++||.+-... ..+.
T Consensus 25 ~~~L~~~L~d~--d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~~~-- 89 (280)
T PRK09687 25 DDELFRLLDDH--NSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RCQD-- 89 (280)
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cchH--
Confidence 44455555443 34556666555543311 123455566666777777777777777653211 1111
Q ss_pred HHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCCcccHHH-----------------------HH---hcCcHHHHHH
Q 017926 213 LELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEM-----------------------FY---VEAGDLMLQD 265 (363)
Q Consensus 213 le~G~lp~Ll~L-L~s~~~~v~~kAL~ALSsLiR~~~~a~~~-----------------------f~---~~gG~~~L~~ 265 (363)
..+|.|..+ +++++..||..|+.+|+.+.......... +. ....++.|+.
T Consensus 90 ---~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~ 166 (280)
T PRK09687 90 ---NVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLIN 166 (280)
T ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 245666655 34444566666666666653322100000 00 0124566666
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 266 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 266 lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+|.++ +..+|..|++.|..+.. . ....++.|+..|...+.+++..|..+|.
T Consensus 167 ~L~d~--~~~VR~~A~~aLg~~~~-----~---------~~~~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 167 LLKDP--NGDVRNWAAFALNSNKY-----D---------NPDIREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred HhcCC--CHHHHHHHHHHHhcCCC-----C---------CHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 66654 33466666666666531 0 1346677888888778888888888877
No 29
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.14 E-value=2.1e-05 Score=83.68 Aligned_cols=141 Identities=13% Similarity=0.045 Sum_probs=114.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCC
Q 017926 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 296 (363)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~ 296 (363)
-+|..+.||.+..+.++..|.+-|--++.++......+.+.||+..|+.+|.++ ...+++.|++++.+|.... .+
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~--~~evq~~acgaLRNLvf~~---~~ 308 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR--NDEVQRQACGALRNLVFGK---ST 308 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC--cHHHHHHHHHHHHhhhccc---CC
Confidence 478899999998899999999999999999999999999999999999999998 4669999999999999742 34
Q ss_pred CCcchhHHhCCcHHHHHHhccC-CChhHHHHHHHHHHhhcccccCchhhhhHHHHH-HhhhhcccccC
Q 017926 297 KVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKVFLEHVFCGLVFCTCPCIVRGAVIV-AEYIYINFSAF 362 (363)
Q Consensus 297 ~~~~~~l~~~g~v~~Lv~lL~~-~d~~lqE~al~aL~~~~~~~~~~~~~~r~~~l~-~~~~~~~~~~~ 362 (363)
.+..-.+.+.+.|+.++.+|+. .|.+++|.+...||.++.....|....++.+-+ .++..+.++.|
T Consensus 309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw 376 (717)
T KOG1048|consen 309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGW 376 (717)
T ss_pred cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhccccccc
Confidence 4577788899999999999997 599999999999995555433445555554433 33444455544
No 30
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.11 E-value=2.3e-05 Score=72.41 Aligned_cols=179 Identities=16% Similarity=0.137 Sum_probs=114.8
Q ss_pred hcCCCCHHHHHHHHHHHHHcccCC---CchhhHHh-c-CCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc
Q 017926 141 NNSTLSLEDSQRALQELLILVEPI---DNANDLSK-L-GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (363)
Q Consensus 141 ~~~~~s~e~k~~AL~~L~~Lve~i---DnAn~l~~-l-Ggl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~ 215 (363)
.+.+.+=+.|..+++.|..++... +....|.. + ..+..++..+++....|...|+.+++.++..-..--+.+ -.
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~ 93 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-AD 93 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HH
Confidence 456667889999999999988766 45555543 2 345677788888888999999999999998533322222 23
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcC
Q 017926 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (363)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~ 295 (363)
..+|.|++.+.+++..++..|..+|-.++++.+.... ++ ...+...+.++ +..+|..++..+..++..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~-~~----~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~----- 161 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK-IL----LEILSQGLKSK--NPQVREECAEWLAIILEK----- 161 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H-HH----HHHHHHHTT-S---HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH-HH----HHHHHHHHhCC--CHHHHHHHHHHHHHHHHH-----
Confidence 5799999999998888899999999999998651111 11 45566666766 577899999998888753
Q ss_pred CCCcchhHHh----CCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 296 HKVEPPLFRD----RFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 296 ~~~~~~~l~~----~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.+.....+.. ..+++.+..++...++++|+.|-.+++
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~ 202 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLW 202 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 2211122222 357788888999999999999999988
No 31
>PRK09687 putative lyase; Provisional
Probab=98.10 E-value=0.00013 Score=70.61 Aligned_cols=153 Identities=12% Similarity=0.038 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHh-cCCCCHHHHHHHHHHHHHHhcc-------------------C
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ-LNHPDTDIRKISAWILGKASQN-------------------N 205 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~l-L~s~~~~Ir~~Aa~~Lgt~aqN-------------------N 205 (363)
++..|..|...|.++-..... .-..++.|..+ ++++++.||..|+.+||.+... +
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCC
Confidence 456666666666654321110 01134445544 4556666777777776665321 2
Q ss_pred hHHHHHHHH-------cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHH
Q 017926 206 PLVQKQVLE-------LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR 278 (363)
Q Consensus 206 p~~Q~~~le-------~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~ 278 (363)
+.++..++. ..+++.|+.+|++++..+|..|+++|+.+--+++ ..++.|+.+|.+. +..+|.
T Consensus 142 ~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~--~~~VR~ 210 (280)
T PRK09687 142 TNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK--NEEIRI 210 (280)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC--ChHHHH
Confidence 233333322 1368888999988888889999999998811111 4677899999877 566899
Q ss_pred HHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 279 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 279 kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.|++.|..+- +..+++.|++.|..++ ++..+..||+
T Consensus 211 ~A~~aLg~~~----------------~~~av~~Li~~L~~~~--~~~~a~~ALg 246 (280)
T PRK09687 211 EAIIGLALRK----------------DKRVLSVLIKELKKGT--VGDLIIEAAG 246 (280)
T ss_pred HHHHHHHccC----------------ChhHHHHHHHHHcCCc--hHHHHHHHHH
Confidence 9999987753 2368899999999876 6677888888
No 32
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.01 E-value=1.1e-05 Score=58.34 Aligned_cols=55 Identities=18% Similarity=0.359 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 017926 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 243 (363)
Q Consensus 188 ~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsL 243 (363)
+.+|..|+|+||++++..+...+. ....++|.|+.+|+++++.||..|++||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999999988877666 3457899999999998899999999999975
No 33
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.99 E-value=2.5e-05 Score=61.04 Aligned_cols=87 Identities=20% Similarity=0.268 Sum_probs=69.3
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHH
Q 017926 176 LSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (363)
Q Consensus 176 l~~Li~lL-~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f 254 (363)
++.|++.| +++++.+|..|+++||..- . ..++|.|+++++++++.+|..|+++|+.+ +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i--~-------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--D---------PEAIPALIELLKDEDPMVRRAAARALGRI--G-------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--H---------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC--H--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--C---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh--C--------
Confidence 57899988 8899999999999999442 1 14599999999998999999999999977 1
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 017926 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (363)
Q Consensus 255 ~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~ 285 (363)
....++.|..++.+++ +..+|..|+..|+
T Consensus 60 -~~~~~~~L~~~l~~~~-~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDD-DEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-S-SHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCC-cHHHHHHHHhhcC
Confidence 3448889999998874 4556777777653
No 34
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=97.96 E-value=4.9e-05 Score=81.00 Aligned_cols=113 Identities=15% Similarity=0.181 Sum_probs=102.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc--cHHH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--GQEM 253 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~--a~~~ 253 (363)
+|-.+.+|.+.++.++..|+.-|-.++-.+.++...+.+.|+||+|+.+|.+...+|+..|++||=+++=+... +.-+
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 56778899999999999999999999999999999999999999999999999999999999999999987655 7778
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 254 f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
+.++||+..++++|+... |..++..++-++-+|.+
T Consensus 315 i~~~~Gv~~l~~~Lr~t~-D~ev~e~iTg~LWNLSS 349 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHTQ-DDEVRELITGILWNLSS 349 (717)
T ss_pred hhhcCChHHHHHHHHhhc-chHHHHHHHHHHhcccc
Confidence 889999999999999643 45688899999888875
No 35
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.89 E-value=0.00084 Score=74.74 Aligned_cols=71 Identities=11% Similarity=0.116 Sum_probs=42.5
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhhhh---------hhcCCCCcch-------hHHhCCcHHHHHHhccCCChhH
Q 017926 260 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ---------LENMHKVEPP-------LFRDRFFLKSVVDLTASADLDL 323 (363)
Q Consensus 260 ~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~---------~~~~~~~~~~-------~l~~~g~v~~Lv~lL~~~d~~l 323 (363)
++.|..+++++ +..+|..|+..|..+-... +...+...+. .+-....++.|+.+|..++..+
T Consensus 777 ~~~L~~ll~D~--d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~V 854 (897)
T PRK13800 777 GDAVRALTGDP--DPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDV 854 (897)
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHH
Confidence 45666666665 4556777776666553210 0011111111 1112356688899999999999
Q ss_pred HHHHHHHHH
Q 017926 324 QEKVFLEHV 332 (363)
Q Consensus 324 qE~al~aL~ 332 (363)
|..|+.+|.
T Consensus 855 R~~A~~aL~ 863 (897)
T PRK13800 855 RKAAVLALT 863 (897)
T ss_pred HHHHHHHHh
Confidence 999999988
No 36
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00096 Score=71.92 Aligned_cols=258 Identities=17% Similarity=0.142 Sum_probs=176.2
Q ss_pred CCChHHHHhhHhhcCCCCCcccchhcccCC-CHH-HHHHhHHHHHHHHHHcCCCC----HH-HHHHHHHHHhhcCCCCHH
Q 017926 76 FSSIDGMLQWAIGHSDPAKLKETAQDVQRL-SPS-ELKKRQMEIKELMEKLKTPS----DA-QLIQIAIDDLNNSTLSLE 148 (363)
Q Consensus 76 ~~~l~~LL~wsi~~s~~~~~~~~~~~~~~~-~~e-~l~~r~~~Lkeal~~l~~~~----d~-~lmk~al~~L~~~~~s~e 148 (363)
+|.+..+|+-.++.+...+.+---+..+.- ||- .+ ++-.++-|.+...+..+ ++ .++.-.+..|+ .+...|
T Consensus 150 gprv~~ll~rt~~~sasSk~kkLL~gL~~~~Des~Ql-eal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~-~E~n~D 227 (1051)
T KOG0168|consen 150 GPRVLQLLHRTIGSSASSKAKKLLQGLQAESDESQQL-EALTELCEMLSMGNEESLSGFPVKSLVPVLVALLS-HEHNFD 227 (1051)
T ss_pred chhHHHHhhhcccccchHHHHHHHHhccccCChHHHH-HHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHh-ccccHH
Confidence 456777778777777766532111111111 221 11 13333334333221111 11 22333344444 455788
Q ss_pred HHHHHHHHHHHcccCC-CchhhHHhcCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhc
Q 017926 149 DSQRALQELLILVEPI-DNANDLSKLGGLSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226 (363)
Q Consensus 149 ~k~~AL~~L~~Lve~i-DnAn~l~~lGgl~~Li~-lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~ 226 (363)
-...|...|.+|+|-. .-..-.+..+.+|.|+. |+.-+.-++-+++..+|-.+.+.+|+ ++++.|+|...+..|+
T Consensus 228 IMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylD 304 (1051)
T KOG0168|consen 228 IMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLD 304 (1051)
T ss_pred HHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHH
Confidence 8999999999999976 34455667789999985 66778999999999999999998874 6889999999999998
Q ss_pred CCCHHHHHHHHHHHHHHhcCC-cccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 227 SSFVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 227 s~~~~v~~kAL~ALSsLiR~~-~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
--+..++++|+.-.+|+|..- ++..+-|. ..+++|..+|+.. +.+.-..++-.+..++... .+.++..+.+..
T Consensus 305 FFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~--D~k~ies~~ic~~ri~d~f--~h~~~kLdql~s 378 (1051)
T KOG0168|consen 305 FFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQ--DKKPIESVCICLTRIADGF--QHGPDKLDQLCS 378 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhc--cchhHHHHHHHHHHHHHhc--ccChHHHHHHhc
Confidence 777888999999999999884 33333333 6799999999875 5566777777777777532 356778889999
Q ss_pred CCcHHHHHHhccCCC----hhHHHHHHHHHHhhcccccCchhhhhH
Q 017926 306 RFFLKSVVDLTASAD----LDLQEKVFLEHVFCGLVFCTCPCIVRG 347 (363)
Q Consensus 306 ~g~v~~Lv~lL~~~d----~~lqE~al~aL~~~~~~~~~~~~~~r~ 347 (363)
.|++....++|.... ..+---..+.|. +++..|+..+|+
T Consensus 379 ~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls---~msS~~pl~~~t 421 (1051)
T KOG0168|consen 379 HDLITNIQQLLSVTPTILSNGTYTGVIRMLS---LMSSGSPLLFRT 421 (1051)
T ss_pred hhHHHHHHHHHhcCcccccccchhHHHHHHH---HHccCChHHHHH
Confidence 999999999998652 233333344444 677778888886
No 37
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.82 E-value=0.0016 Score=66.55 Aligned_cols=195 Identities=12% Similarity=0.038 Sum_probs=132.2
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCC-CchhhHHhc-----CCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 017926 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKL-----GGLSVLVGQLNHPDTDIRKISAWILGKASQ 203 (363)
Q Consensus 130 ~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnAn~l~~l-----Ggl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aq 203 (363)
....+-.+..+... ...+-..-.|--+.+++... ..++-|... .-+.+++.+|++++.-|...|+.+|+.+++
T Consensus 52 ~~y~~~~l~ll~~~-~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQI-DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHh
Confidence 44555555555543 33455555666666666553 335566654 578899999999999999999999999987
Q ss_pred cChHHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 017926 204 NNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (363)
Q Consensus 204 NNp~~Q~~~le~G~lp~Ll~LL~s~-~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~ 282 (363)
-.+.........-.++-|...+++. +...+.-++.+++.++|. +..+..|.+.+|++.|+.+|+....+..++=.+++
T Consensus 131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 5443222211111344556666654 345577788999999996 56678899999999999999875435667888888
Q ss_pred HHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHHHHHHHHHH
Q 017926 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKVFLEHV 332 (363)
Q Consensus 283 lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~aL~ 332 (363)
.+=-|+. ++...+.+...++++.++++++.. -..+...++.++.
T Consensus 210 ~lWlLSF------~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~ 254 (429)
T cd00256 210 CIWLLTF------NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFR 254 (429)
T ss_pred HHHHHhc------cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8887775 233555667789999999999874 3333333444444
No 38
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.81 E-value=1.7e-05 Score=54.20 Aligned_cols=38 Identities=32% Similarity=0.691 Sum_probs=35.3
Q ss_pred CchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 017926 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKAS 202 (363)
Q Consensus 165 DnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~a 202 (363)
++...+.+.||+|+|+.+|++++++++..|+|+|++++
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999987
No 39
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.77 E-value=0.0015 Score=72.82 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=89.9
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHH----------hccChHHHHHHHHc---------CcHHHHHHhhcCCCHHHHHH
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKA----------SQNNPLVQKQVLEL---------GALSKLMKMVKSSFVEEAVK 235 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~----------aqNNp~~Q~~~le~---------G~lp~Ll~LL~s~~~~v~~k 235 (363)
-...++..|.++++.+|..|+.+|+.+ ...++.++..+.+. ..++.|+.+++++++.+|..
T Consensus 715 ~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 715 DAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHH
Confidence 345666777777778887777777753 22355566554432 23688999999988889999
Q ss_pred HHHHHHHHhcCCcc------------------cHHHHHhc---CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhc
Q 017926 236 ALYTVSSLIRNNLA------------------GQEMFYVE---AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (363)
Q Consensus 236 AL~ALSsLiR~~~~------------------a~~~f~~~---gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~ 294 (363)
|+.+|+.+-..... +...+... ..++.|+.+|+++ +..+|..|+..|..+-
T Consensus 795 A~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~~------ 866 (897)
T PRK13800 795 ALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDP--HLDVRKAAVLALTRWP------ 866 (897)
T ss_pred HHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCC--CHHHHHHHHHHHhccC------
Confidence 99999876321100 00111111 2345666666665 4556677776666542
Q ss_pred CCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 295 MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 295 ~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
. +....+.|...|+.+|.+++..|..||.
T Consensus 867 ~---------~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 867 G---------DPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred C---------CHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1 1234677788888889999999998875
No 40
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.69 E-value=0.0023 Score=65.99 Aligned_cols=164 Identities=18% Similarity=0.139 Sum_probs=114.0
Q ss_pred CCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHh
Q 017926 145 LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (363)
Q Consensus 145 ~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~L 224 (363)
.+.+.|..+.-.+..+.+... ++..+ .+..+.+-|+++++.+|..|..+|++++ +|+.-+. .+|.+.++
T Consensus 54 ~~~~~Krl~yl~l~~~~~~~~---~~~~l-~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~l 122 (526)
T PF01602_consen 54 KDLELKRLGYLYLSLYLHEDP---ELLIL-IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKL 122 (526)
T ss_dssp SSHHHHHHHHHHHHHHTTTSH---HHHHH-HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcch---hHHHH-HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHH
Confidence 356667666666666544432 23333 4666777788899999999999999987 5655544 47888899
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHH
Q 017926 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (363)
Q Consensus 225 L~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~ 304 (363)
+.++++.||.+|+.|+..+.+.+|...... -++.|..+|.++ +..++..|+.++..+ . .++.... -.
T Consensus 123 l~~~~~~VRk~A~~~l~~i~~~~p~~~~~~----~~~~l~~lL~d~--~~~V~~~a~~~l~~i-~-----~~~~~~~-~~ 189 (526)
T PF01602_consen 123 LSDPSPYVRKKAALALLKIYRKDPDLVEDE----LIPKLKQLLSDK--DPSVVSAALSLLSEI-K-----CNDDSYK-SL 189 (526)
T ss_dssp HHSSSHHHHHHHHHHHHHHHHHCHCCHHGG----HHHHHHHHTTHS--SHHHHHHHHHHHHHH-H-----CTHHHHT-TH
T ss_pred hcCCchHHHHHHHHHHHHHhccCHHHHHHH----HHHHHhhhccCC--cchhHHHHHHHHHHH-c-----cCcchhh-hh
Confidence 999888999999999999998877654321 378899998765 567888888888888 2 1212111 11
Q ss_pred hCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 305 DRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 305 ~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
-..+++.|..++...++-.|.++++.+.
T Consensus 190 ~~~~~~~L~~~l~~~~~~~q~~il~~l~ 217 (526)
T PF01602_consen 190 IPKLIRILCQLLSDPDPWLQIKILRLLR 217 (526)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHT
T ss_pred HHHHHHHhhhcccccchHHHHHHHHHHH
Confidence 2344555555556779999999999988
No 41
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.68 E-value=0.0002 Score=72.23 Aligned_cols=142 Identities=13% Similarity=0.091 Sum_probs=110.7
Q ss_pred CCCCHHHHHHHHHHHHHHhccChHHHHHHHH----cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc
Q 017926 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLE----LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 259 (363)
Q Consensus 184 ~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le----~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG 259 (363)
...+..++..++.|++..+. ||.-+..|.+ .+++..|.+...+++.++-.....||+++|-.+.+++.+|.+.||
T Consensus 52 ~~~~~tv~~~qssC~A~~sk-~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgG 130 (604)
T KOG4500|consen 52 MTASDTVYLFQSSCLADRSK-NEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGG 130 (604)
T ss_pred eeccchhhhhhHHHHHHHhh-hHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCC
Confidence 44577899999999999984 5655555654 477889999999988889999999999999999999999999999
Q ss_pred HHHHHHhhcCC-----CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC--ChhHHHHHHHHH
Q 017926 260 DLMLQDILGNS-----SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKVFLEH 331 (363)
Q Consensus 260 ~~~L~~lL~s~-----~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~lqE~al~aL 331 (363)
-++++..|+.- ..+.++-.-+..++.+... .+.+.+..+.+.|+++.|+..+--+ +..+.|+.+...
T Consensus 131 aqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l-----~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f 204 (604)
T KOG4500|consen 131 AQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL-----DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPF 204 (604)
T ss_pred ceehHhhhccccccCCccHHHHHHHHHHHHHHhhC-----CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhcc
Confidence 88888887642 1123454555556666653 4667788899999999999998765 677778776663
No 42
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.62 E-value=0.00078 Score=65.85 Aligned_cols=174 Identities=18% Similarity=0.128 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHH
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 221 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s----~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~L 221 (363)
+.--...|+..|..++..-+....-...+.++.++..|.+ ++.+++..|..+++.+.. ++..+..|.+.|+++.|
T Consensus 118 D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l 196 (312)
T PF03224_consen 118 DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPL 196 (312)
T ss_dssp SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHH
Confidence 4445666777777776665443333223456777766653 567788999999999995 78899999999999999
Q ss_pred HHhh-----cCCC--HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhc
Q 017926 222 MKMV-----KSSF--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (363)
Q Consensus 222 l~LL-----~s~~--~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~ 294 (363)
..++ .+.. ..++..+++++=.+. -++.....+.+.+-++.|..+++... ..|+-|-+...+.||+..
T Consensus 197 ~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~L~~i~~~~~-KEKvvRv~la~l~Nl~~~---- 270 (312)
T PF03224_consen 197 FDILRKQATNSNSSGIQLQYQALLCLWLLS-FEPEIAEELNKKYLIPLLADILKDSI-KEKVVRVSLAILRNLLSK---- 270 (312)
T ss_dssp HHHHH---------HHHHHHHHHHHHHHHT-TSHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHHHHHHTTSS----
T ss_pred HHHHHhhcccCCCCchhHHHHHHHHHHHHh-cCHHHHHHHhccchHHHHHHHHHhcc-cchHHHHHHHHHHHHHhc----
Confidence 9999 2222 245667777777664 35677788888888999999998764 578889999999999952
Q ss_pred CCCCcchhHHhCCcHHHHHHhccCC--ChhHHHH
Q 017926 295 MHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEK 326 (363)
Q Consensus 295 ~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~lqE~ 326 (363)
......+.++..|+++.+-.+.... |+++.|-
T Consensus 271 ~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 271 APKSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp SSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred cHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 2334778888888887777776653 8888763
No 43
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.61 E-value=0.0022 Score=66.10 Aligned_cols=182 Identities=17% Similarity=0.175 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh
Q 017926 129 DAQLIQIAIDDLNN--STLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206 (363)
Q Consensus 129 d~~lmk~al~~L~~--~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp 206 (363)
+.+.+.-++..+.. .+.++..+..||..+..+. ..+.++. .++.+.++|.++++.||..|+.++..+.+.+|
T Consensus 73 ~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p 146 (526)
T PF01602_consen 73 DPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDP 146 (526)
T ss_dssp SHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH
T ss_pred chhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCH
Confidence 44544445544432 1236778899999999865 3333433 36788899999999999999999999999888
Q ss_pred HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 017926 207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (363)
Q Consensus 207 ~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~ 286 (363)
..-. .. .++.|.++|.+.++.++..|+.++..+ +.++.....+. ..-+..|..++..+ ++-++.+++.++..
T Consensus 147 ~~~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~--~~~~q~~il~~l~~ 218 (526)
T PF01602_consen 147 DLVE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDP--DPWLQIKILRLLRR 218 (526)
T ss_dssp CCHH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCC--SHHHHHHHHHHHTT
T ss_pred HHHH---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhccccc--chHHHHHHHHHHHh
Confidence 6432 22 699999999988899999999999999 55444322111 22355556666554 88887777766553
Q ss_pred HhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 287 L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+ .+..........+++.+..++++.+..+.-.+..++.
T Consensus 219 ~--------~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~ 256 (526)
T PF01602_consen 219 Y--------APMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLII 256 (526)
T ss_dssp S--------TSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--------ccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 2 2222222222578999999999888888877777776
No 44
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.61 E-value=0.00028 Score=58.30 Aligned_cols=68 Identities=18% Similarity=0.178 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCcccHHHHHhc
Q 017926 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (363)
Q Consensus 190 Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~--~~~v~~kAL~ALSsLiR~~~~a~~~f~~~ 257 (363)
+|.....+||+++-+|+.+|+.+.+.|+||.++..-.-+ ++-++.-|++||=+++.+++++|+.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 467778999999999999999999999999999876543 46789999999999999999999877754
No 45
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.00086 Score=74.20 Aligned_cols=155 Identities=12% Similarity=0.048 Sum_probs=117.8
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcH
Q 017926 181 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 260 (363)
Q Consensus 181 ~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~ 260 (363)
.+|.|++..-|..|..+|+.++...++.-...+. ..++..+..|+++.+-||..|+.||+-+..+..+-.+.....--+
T Consensus 355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~ 433 (1075)
T KOG2171|consen 355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP 433 (1075)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence 5678999999999999999999876554443222 567777778888889999999999999999999888888877888
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHH-HHHHhccCCChhHHHHHHHHHHhhccccc
Q 017926 261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK-SVVDLTASADLDLQEKVFLEHVFCGLVFC 339 (363)
Q Consensus 261 ~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~-~Lv~lL~~~d~~lqE~al~aL~~~~~~~~ 339 (363)
+.|+..+.+.. +++++..|+..+-++... ...+...-.. .+++. .+..++.++.+.+||.++.|+. .++.
T Consensus 434 ~aL~~~ld~~~-~~rV~ahAa~al~nf~E~----~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIa---svA~ 504 (1075)
T KOG2171|consen 434 PALIALLDSTQ-NVRVQAHAAAALVNFSEE----CDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIA---SVAD 504 (1075)
T ss_pred HHHHHHhcccC-chHHHHHHHHHHHHHHHh----CcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHH---HHHH
Confidence 89999998874 679999999999988752 2323222222 23334 3444566789999999999999 6666
Q ss_pred Cchhhh
Q 017926 340 TCPCIV 345 (363)
Q Consensus 340 ~~~~~~ 345 (363)
.+.+.|
T Consensus 505 AA~~~F 510 (1075)
T KOG2171|consen 505 AAQEKF 510 (1075)
T ss_pred HHhhhh
Confidence 666533
No 46
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.55 E-value=0.002 Score=70.87 Aligned_cols=196 Identities=16% Similarity=0.124 Sum_probs=154.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccC
Q 017926 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN 205 (363)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~-~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN 205 (363)
..+++.+..-+++|-. .--|..||.-|..+++---.|-++. ..|-+|.+++||+++-.++|--=..+=+.+..-.
T Consensus 468 r~PPeQLPiVLQVLLS----QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD 543 (1387)
T KOG1517|consen 468 RTPPEQLPIVLQVLLS----QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD 543 (1387)
T ss_pred CCChHhcchHHHHHHH----HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC
Confidence 3456666666666643 2457889888888877777788777 4689999999999999999988888888888878
Q ss_pred hHHHHHHHHcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 017926 206 PLVQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (363)
Q Consensus 206 p~~Q~~~le~G~lp~Ll~LL~s~---~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~ 282 (363)
|.||..+++.++-...++.|..+ +++-|.-|.+-|+.+++|++-+|+...+.+-+.+-.+.|.++. ..-+|.=.+-
T Consensus 544 ~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~i 622 (1387)
T KOG1517|consen 544 PSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCI 622 (1387)
T ss_pred chhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHH
Confidence 99999999999888888888873 2466889999999999999999999999888888888888752 4556666666
Q ss_pred HHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 283 lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.|.-|=. ..+..+=.=.+.+....|..+|+.+-+++|..|.-||+
T Consensus 623 cLG~LW~-----d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 623 CLGRLWE-----DYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred HHHHHhh-----hcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 6666543 12222222245678889999999889999999999988
No 47
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.46 E-value=0.0002 Score=60.70 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccC
Q 017926 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN 205 (363)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~-~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN 205 (363)
.++.+++|..++.|..+. ++.....|+.+|.++|....+.+.+. ++|+=..+..+++++|++||..|..++..+..+|
T Consensus 39 ~~~~~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 39 ENNFELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp SGGGHHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred HcccHHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 368999999999996543 66677889999999999999888887 5677778889999999999999999999887654
No 48
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.40 E-value=0.00057 Score=53.25 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=67.2
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCC
Q 017926 218 LSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 296 (363)
Q Consensus 218 lp~Ll~LL-~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~ 296 (363)
||.|++.| ++++..+|..|+++|+.+ + ....++.|..+++++ +..+|..|++.|..+-.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~--~---------~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL--G---------DPEAIPALIELLKDE--DPMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC--T---------HHHHHHHHHHHHTSS--SHHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc--C---------CHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC-------
Confidence 68999999 777789999999999933 1 113488999999775 67899999999987642
Q ss_pred CCcchhHHhCCcHHHHHHhccCC-ChhHHHHHHHHHH
Q 017926 297 KVEPPLFRDRFFLKSVVDLTASA-DLDLQEKVFLEHV 332 (363)
Q Consensus 297 ~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~aL~ 332 (363)
...++.|.+++.++ +..+++.+..+|.
T Consensus 61 ---------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ---------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 34789999999886 5566899988864
No 49
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.40 E-value=0.0011 Score=69.64 Aligned_cols=140 Identities=14% Similarity=0.147 Sum_probs=113.7
Q ss_pred CHHHHHHHHH---HHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHH
Q 017926 146 SLEDSQRALQ---ELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (363)
Q Consensus 146 s~e~k~~AL~---~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll 222 (363)
+.+....|+. .++..|..+++. +....+..|++++|..++..|+..+..+|++++-.-...|..|+.+|+|..|.
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 4444545544 445556666665 88889999999999999999999999999999987777899999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCcc-cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 223 KMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 223 ~LL~s~~~~v~~kAL~ALSsLiR~~~~-a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
+++.+.+..++.+++|+|-.+.=+... -+.++..-=+-..|..+..++ +..++..+..++++|+-
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~--d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP--DWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC--CHHHHHHHHHHHHHhhc
Confidence 999999999999999999998876543 334555555667777777776 67899999999999974
No 50
>PF05536 Neurochondrin: Neurochondrin
Probab=97.37 E-value=0.0047 Score=65.19 Aligned_cols=153 Identities=16% Similarity=0.184 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCc-hh---hHHhcCCHHHHHHhcCC-------CCHHHHHHHHHH
Q 017926 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-AN---DLSKLGGLSVLVGQLNH-------PDTDIRKISAWI 197 (363)
Q Consensus 129 d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDn-An---~l~~lGgl~~Li~lL~s-------~~~~Ir~~Aa~~ 197 (363)
..+.+++++..|+... .+.|..+|--+..++.+.|. +. .+.+.=|..-+-++|++ +....+..|..+
T Consensus 3 ~~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 3 QSASLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred chHHHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 3566888999998765 57899999999999987763 21 24444457888899987 457889999999
Q ss_pred HHHHhccChHHH--HHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccH
Q 017926 198 LGKASQNNPLVQ--KQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEI 274 (363)
Q Consensus 198 Lgt~aqNNp~~Q--~~~le~G~lp~Ll~LL~s~~~-~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~ 274 (363)
|++.+. -|+.. ..++ +-||.|++.+.+.+. ++...++..|.+++ .++.+.+.|++.|+++.|.+++.+. .
T Consensus 81 L~~f~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~~---~ 153 (543)
T PF05536_consen 81 LAAFCR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPNQ---S 153 (543)
T ss_pred HHHHcC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHhC---c
Confidence 999998 44443 2232 569999999988776 78889999999999 7899999999999999999999874 2
Q ss_pred HHHHHHHHHHHHHhhh
Q 017926 275 RLHRKAVSLVGDLAKC 290 (363)
Q Consensus 275 klr~kA~~lL~~L~~~ 290 (363)
..+..|..++.+++..
T Consensus 154 ~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 154 FQMEIALNLLLNLLSR 169 (543)
T ss_pred chHHHHHHHHHHHHHh
Confidence 4577899999998863
No 51
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=97.37 E-value=0.0012 Score=74.61 Aligned_cols=143 Identities=19% Similarity=0.200 Sum_probs=117.9
Q ss_pred CCCHHHHHHHHHHHHHcccCCCchhhHHhc-CCHHHHHHhcCC----CCHHHHHHHHHHHHHHhc---cChHHHHHHHHc
Q 017926 144 TLSLEDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLNH----PDTDIRKISAWILGKASQ---NNPLVQKQVLEL 215 (363)
Q Consensus 144 ~~s~e~k~~AL~~L~~Lve~iDnAn~l~~l-Ggl~~Li~lL~s----~~~~Ir~~Aa~~Lgt~aq---NNp~~Q~~~le~ 215 (363)
+.++...+.||.+|.-. .-.|-..|+.. |.+..|+.+|.. ..-.|-+.|-.||.++.+ +++..++...++
T Consensus 452 EsTLKavLSALWNLSAH--cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~ 529 (2195)
T KOG2122|consen 452 ESTLKAVLSALWNLSAH--CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH 529 (2195)
T ss_pred cchHHHHHHHHhhhhhc--ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh
Confidence 35778888999999864 34567788876 678888999964 345677778788776655 688888889999
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
++|..|++.|++.+-.+..+++.+|-||..-++.-|+.+.+.|.+.+|..++++++.. +.+-++..|.||+.+
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkM--Ia~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKM--IAMGSAAALRNLLNF 602 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhh--hhhhHHHHHHHHhcC
Confidence 9999999999999888888999999999888899999999999999999999998543 567788888898853
No 52
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.32 E-value=0.0004 Score=46.38 Aligned_cols=39 Identities=31% Similarity=0.535 Sum_probs=35.6
Q ss_pred CchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 017926 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ 203 (363)
Q Consensus 165 DnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aq 203 (363)
+++..+...||+++|+++|++++++++..|+|+|++++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 467888999999999999999999999999999999863
No 53
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.22 E-value=0.0092 Score=61.12 Aligned_cols=154 Identities=13% Similarity=0.015 Sum_probs=113.9
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhccChHHHHHHHHc-----CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc
Q 017926 176 LSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLEL-----GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (363)
Q Consensus 176 l~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~-----G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~ 249 (363)
...++.+|+ ..++++..+....+..+.+.+|.....|.+. ....+++.+|..++..+..+|.+.|+.++...+.
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~ 134 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLA 134 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcc
Confidence 345566774 4688999999999999999999988888876 4677888899988888899999999999875443
Q ss_pred cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC--ChhHHHHH
Q 017926 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKV 327 (363)
Q Consensus 250 a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~lqE~a 327 (363)
........--++.|...+++.. +...+.-++..+..|+. .+..+..|.+.++++.|+++|+.. +.+++=++
T Consensus 135 ~~~~~~l~~~~~~l~~~l~~~~-~~~~~~~~v~~L~~LL~------~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ 207 (429)
T cd00256 135 KMEGSDLDYYFNWLKEQLNNIT-NNDYVQTAARCLQMLLR------VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQS 207 (429)
T ss_pred ccchhHHHHHHHHHHHHhhccC-CcchHHHHHHHHHHHhC------CchHHHHHHHccCHHHHHHHHhhccccHHHHHHH
Confidence 2211111112345666666542 23456667788888874 567788888888999999999863 56888999
Q ss_pred HHHHHhhcc
Q 017926 328 FLEHVFCGL 336 (363)
Q Consensus 328 l~aL~~~~~ 336 (363)
+-|+|+++-
T Consensus 208 ll~lWlLSF 216 (429)
T cd00256 208 IFCIWLLTF 216 (429)
T ss_pred HHHHHHHhc
Confidence 999995443
No 54
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.20 E-value=0.015 Score=58.60 Aligned_cols=180 Identities=16% Similarity=0.101 Sum_probs=126.7
Q ss_pred CCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHH
Q 017926 143 STLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (363)
Q Consensus 143 ~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll 222 (363)
......+|+.||.-+..+++-.+..+. ...|.+..++.+.++++..+|..|..+|+.++--||+ .+.+.||+..|+
T Consensus 78 ~~~~~~ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~ 153 (371)
T PF14664_consen 78 DNKNDVEREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLL 153 (371)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHH
Confidence 334567899999998888876554444 4778899999999999999999999999999999985 466889999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCC-----CccH--HHHHHHHHHHHHHhhhhhhcC
Q 017926 223 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-----SFEI--RLHRKAVSLVGDLAKCQLENM 295 (363)
Q Consensus 223 ~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~-----~~~~--klr~kA~~lL~~L~~~~~~~~ 295 (363)
+.+.+++.+.....+.++-.++ ++|..++-+...--++.+..-+.+. +.+. ..-..+..++..+...
T Consensus 154 ~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs----- 227 (371)
T PF14664_consen 154 RALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS----- 227 (371)
T ss_pred HHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc-----
Confidence 9998866666777778887777 3454443333333456555554433 1121 2334566666666642
Q ss_pred CCCcchhHHhC-CcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 296 HKVEPPLFRDR-FFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 296 ~~~~~~~l~~~-g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
=+...-.-.+. ..++.|++.|..+++++++..+..+.
T Consensus 228 W~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~ 265 (371)
T PF14664_consen 228 WPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLF 265 (371)
T ss_pred CCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12211111122 57899999999999999999988765
No 55
>PTZ00429 beta-adaptin; Provisional
Probab=97.19 E-value=0.036 Score=60.66 Aligned_cols=158 Identities=13% Similarity=0.057 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHcc-cCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh
Q 017926 147 LEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lv-e~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL 225 (363)
...|..++..+-.+. ...|.. -+++-++.++.+++.++|...--.+.+.+..+|+..-. +++.|.+=+
T Consensus 46 ~~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl 114 (746)
T PTZ00429 46 SYRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDT 114 (746)
T ss_pred HHHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHc
Confidence 455555655444432 333322 25677788888888889888888888888877764322 466777777
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
.++++.+|.-|+..+|++- . +...+ -.+..+.+++.++ +..||++|+..+..|.. .+++ .+.+
T Consensus 115 ~d~Np~IRaLALRtLs~Ir-~-~~i~e-----~l~~~lkk~L~D~--~pYVRKtAalai~Kly~-----~~pe---lv~~ 177 (746)
T PTZ00429 115 TNSSPVVRALAVRTMMCIR-V-SSVLE-----YTLEPLRRAVADP--DPYVRKTAAMGLGKLFH-----DDMQ---LFYQ 177 (746)
T ss_pred CCCCHHHHHHHHHHHHcCC-c-HHHHH-----HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHh-----hCcc---cccc
Confidence 7778888888888888873 2 22222 2345577777765 57788888888888864 2332 3446
Q ss_pred CCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 306 RFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 306 ~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.|+++.|.++|...|+.++-.|+.+|.
T Consensus 178 ~~~~~~L~~LL~D~dp~Vv~nAl~aL~ 204 (746)
T PTZ00429 178 QDFKKDLVELLNDNNPVVASNAAAIVC 204 (746)
T ss_pred cchHHHHHHHhcCCCccHHHHHHHHHH
Confidence 688888888888888888888888876
No 56
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.18 E-value=0.0021 Score=65.04 Aligned_cols=156 Identities=16% Similarity=0.113 Sum_probs=113.3
Q ss_pred cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCC----CH---HHHHHHHHHHHHHhc
Q 017926 173 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----FV---EEAVKALYTVSSLIR 245 (363)
Q Consensus 173 lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~----~~---~v~~kAL~ALSsLiR 245 (363)
.|.+++|.+..+|++.++-.+.+++||++|..|.+.+..|.+.||-..++++|+.. ++ +.-.-+..-|++.+-
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 46788888889999999999999999999999999999999999988888877642 21 233455667888888
Q ss_pred CCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHH
Q 017926 246 NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQ 324 (363)
Q Consensus 246 ~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lq 324 (363)
++..-+.+..+.|.++.|...+.-+-.+..+..+-..-..+|++- ..+-..+.+.+..++..++.+|.+. .++..
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~----~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~ 241 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF----VCEMLYPFCKDCSLVFMLLQLLPSMVREDID 241 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH----HHHhhhhhhccchHHHHHHHHHHHhhccchh
Confidence 888889999999999999888764433333444444333344321 0122345566777888888888764 77777
Q ss_pred HHHHHHHH
Q 017926 325 EKVFLEHV 332 (363)
Q Consensus 325 E~al~aL~ 332 (363)
|.....+.
T Consensus 242 eM~feila 249 (604)
T KOG4500|consen 242 EMIFEILA 249 (604)
T ss_pred hHHHHHHH
Confidence 76655544
No 57
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.17 E-value=0.0011 Score=44.22 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=34.9
Q ss_pred hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 017926 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (363)
Q Consensus 206 p~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLi 244 (363)
+.....+++.|++|.|++++++++..++..++++|++|+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346777889999999999999888999999999999986
No 58
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=97.13 E-value=0.0029 Score=71.64 Aligned_cols=178 Identities=14% Similarity=0.074 Sum_probs=120.3
Q ss_pred CCchhhHHhc-CCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHH-HcCcHHHHHHhhcCC-CHHHHHHHHHHH
Q 017926 164 IDNANDLSKL-GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVKSS-FVEEAVKALYTV 240 (363)
Q Consensus 164 iDnAn~l~~l-Ggl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~l-e~G~lp~Ll~LL~s~-~~~v~~kAL~AL 240 (363)
+.|-..|+.. |-++.||..|.+...++..-.|.+|.++.=+-+..-+.++ +.|-+-.|....-.. ....-...|.||
T Consensus 383 v~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSAL 462 (2195)
T KOG2122|consen 383 VANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSAL 462 (2195)
T ss_pred ccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHH
Confidence 3444455554 3455667777777777777777777777655444444444 447666666554332 222223345555
Q ss_pred HHHhcCCcccHHHHHhc-CcHHHHHHhhcCC--CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhcc
Q 017926 241 SSLIRNNLAGQEMFYVE-AGDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA 317 (363)
Q Consensus 241 SsLiR~~~~a~~~f~~~-gG~~~L~~lL~s~--~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~ 317 (363)
=||..|+-.+...|+.. |.+..|+..|.-+ ....++...+-..|.|...... ..+.-++.+.+++++..|+.+|+
T Consensus 463 WNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IA--t~E~yRQILR~~NCLq~LLQ~LK 540 (2195)
T KOG2122|consen 463 WNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIA--TCEDYRQILRRHNCLQTLLQHLK 540 (2195)
T ss_pred hhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhh--ccchHHHHHHHhhHHHHHHHHhh
Confidence 55556777788899987 5589999999754 3345677777778877765442 45667888999999999999999
Q ss_pred CCChhHHHHHHHHHHhhcccccCchh
Q 017926 318 SADLDLQEKVFLEHVFCGLVFCTCPC 343 (363)
Q Consensus 318 ~~d~~lqE~al~aL~~~~~~~~~~~~ 343 (363)
+....+.-.++++||.+..-.+.+.+
T Consensus 541 S~SLTiVSNaCGTLWNLSAR~p~DQq 566 (2195)
T KOG2122|consen 541 SHSLTIVSNACGTLWNLSARSPEDQQ 566 (2195)
T ss_pred hcceEEeecchhhhhhhhcCCHHHHH
Confidence 99999999999999955554444433
No 59
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.013 Score=65.24 Aligned_cols=194 Identities=16% Similarity=0.091 Sum_probs=129.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhc------CCHHHHHHhcCCC--C--------------HHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL------GGLSVLVGQLNHP--D--------------TDI 190 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~l------Ggl~~Li~lL~s~--~--------------~~I 190 (363)
++-.+++..|.+.+...|..||+-|--+++. |-...+. -.++.++.++... + ..-
T Consensus 249 i~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~---Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~ 325 (1075)
T KOG2171|consen 249 IQFSLEIAKNKELENSIRHLALEFLVSLSEY---APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETP 325 (1075)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHHHHh---hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCc
Confidence 3445566677778888999999999998887 4433331 2344555554321 1 124
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCC
Q 017926 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (363)
Q Consensus 191 r~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~ 270 (363)
...|..+|-.++-.=+..|-. .-.++.+-.++.+++-..|..++-|||.+..|+......-+ -..++++...|+++
T Consensus 326 ~~~A~~~lDrlA~~L~g~~v~---p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dp 401 (1075)
T KOG2171|consen 326 YRAAEQALDRLALHLGGKQVL---PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDP 401 (1075)
T ss_pred HHHHHHHHHHHHhcCChhheh---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCC
Confidence 455666666666542221111 12345566778888888899999999999998776544311 24678888889987
Q ss_pred CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHHHHHHHHHHhhcccccCchh
Q 017926 271 SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKVFLEHVFCGLVFCTCPC 343 (363)
Q Consensus 271 ~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~aL~~~~~~~~~~~~ 343 (363)
+++||--|++++..+.+. -.++. +.-..+-+++.|+..+.+. ++.++-+|+.|+. .....|+.
T Consensus 402 --hprVr~AA~naigQ~std----l~p~i-qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~---nf~E~~~~ 465 (1075)
T KOG2171|consen 402 --HPRVRYAALNAIGQMSTD----LQPEI-QKKHHERLPPALIALLDSTQNVRVQAHAAAALV---NFSEECDK 465 (1075)
T ss_pred --CHHHHHHHHHHHHhhhhh----hcHHH-HHHHHHhccHHHHHHhcccCchHHHHHHHHHHH---HHHHhCcH
Confidence 688999999999999863 22332 2333456778888888876 8899999999988 44455553
No 60
>PTZ00429 beta-adaptin; Provisional
Probab=97.08 E-value=0.057 Score=59.08 Aligned_cols=158 Identities=13% Similarity=0.156 Sum_probs=80.2
Q ss_pred HhHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-CCchhhHHhcCCHHHHHHhcCCCCHH
Q 017926 112 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTD 189 (363)
Q Consensus 112 ~r~~~Lkeal~~l-~~~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~-iDnAn~l~~lGgl~~Li~lL~s~~~~ 189 (363)
+|++-+|+++..+ .|.+-..+....++.+... +.+.|.-..--+..+.+. .|.+ +=.+..+.+-++++++-
T Consensus 48 ~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~--d~elKKLvYLYL~~ya~~~pela-----lLaINtl~KDl~d~Np~ 120 (746)
T PTZ00429 48 RKKAAVKRIIANMTMGRDVSYLFVDVVKLAPST--DLELKKLVYLYVLSTARLQPEKA-----LLAVNTFLQDTTNSSPV 120 (746)
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcccChHHH-----HHHHHHHHHHcCCCCHH
Confidence 4566677776665 3445445555555544332 455555554444444332 1211 11233444555566666
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcC
Q 017926 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 269 (363)
Q Consensus 190 Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s 269 (363)
+|..|.+.++.+- .|..-+. .++.+.+.+.+.++-||.+|+.|+..+-+.+|. .+.+.|=++.|..+|.+
T Consensus 121 IRaLALRtLs~Ir--~~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D 190 (746)
T PTZ00429 121 VRALAVRTMMCIR--VSSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLND 190 (746)
T ss_pred HHHHHHHHHHcCC--cHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcC
Confidence 6666666666553 2322222 244455555555566666666666666655442 22223334455555554
Q ss_pred CCccHHHHHHHHHHHHHHh
Q 017926 270 SSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 270 ~~~~~klr~kA~~lL~~L~ 288 (363)
. +..+...|+.++..+.
T Consensus 191 ~--dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 191 N--NPVVASNAAAIVCEVN 207 (746)
T ss_pred C--CccHHHHHHHHHHHHH
Confidence 3 3345556666555554
No 61
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.022 Score=61.50 Aligned_cols=215 Identities=18% Similarity=0.158 Sum_probs=151.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcc
Q 017926 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQN 204 (363)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~~Lgt~aqN 204 (363)
++.++.+.+..+-+.+.. =+|+|..|+..|--+.... +..+...|++|++.-|+. .++++-..+...+..+..+
T Consensus 18 ~s~aETI~kLcDRvessT-L~eDRR~A~rgLKa~srkY---R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~ 93 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESST-LLEDRRDAVRGLKAFSRKY---REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSH 93 (970)
T ss_pred ccHHhHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHH---HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence 456677777777777643 4678878877776654332 334556799999999965 5899999999999999876
Q ss_pred C--------h--------HHHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc-cHHHHHhc-CcHHHHHH
Q 017926 205 N--------P--------LVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVE-AGDLMLQD 265 (363)
Q Consensus 205 N--------p--------~~Q~~~le~-G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~-a~~~f~~~-gG~~~L~~ 265 (363)
. + ...+.|++. +.|..|+..+...+-.||..++.-|++++++-|. .++.++.. -|+..|+.
T Consensus 94 dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd 173 (970)
T KOG0946|consen 94 DDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD 173 (970)
T ss_pred CcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence 4 2 234556654 7899999999998888999999999999998554 45566654 79999999
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC---Ch-hHHHHHHHHHHhhcccccCc
Q 017926 266 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA---DL-DLQEKVFLEHVFCGLVFCTC 341 (363)
Q Consensus 266 lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~---d~-~lqE~al~aL~~~~~~~~~~ 341 (363)
+|.+. -..+|..+..+|..|+. .++.....+.=++....|.+++... |- -+.|-++..|..+=-...+.
T Consensus 174 lL~Ds--rE~IRNe~iLlL~eL~k-----~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN 246 (970)
T KOG0946|consen 174 LLRDS--REPIRNEAILLLSELVK-----DNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN 246 (970)
T ss_pred HHhhh--hhhhchhHHHHHHHHHc-----cCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch
Confidence 99986 34589999999999985 4555444444467777888887642 22 34454544444211234456
Q ss_pred hhhhhHHHHHH
Q 017926 342 PCIVRGAVIVA 352 (363)
Q Consensus 342 ~~~~r~~~l~~ 352 (363)
...||++.-+.
T Consensus 247 Q~~FrE~~~i~ 257 (970)
T KOG0946|consen 247 QNFFREGSYIP 257 (970)
T ss_pred hhHHhccccHH
Confidence 66777654433
No 62
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.002 Score=66.71 Aligned_cols=136 Identities=11% Similarity=0.048 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCC
Q 017926 192 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271 (363)
Q Consensus 192 ~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~ 271 (363)
..++.+|-++...--..+--..++....+|+++|++++..+.--+..++++.+-.+.+-+.-|++.|-++.|+..+.++
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK- 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK- 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-
Confidence 3444555566655555566666778899999999998777777899999999999999999999999999999999976
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 272 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 272 ~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
|..+|.++.|.++++... .++...-.+.....+..+++....++-.+|++.++.+..
T Consensus 486 -DdaLqans~wvlrHlmyn----cq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrN 542 (743)
T COG5369 486 -DDALQANSEWVLRHLMYN----CQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRN 542 (743)
T ss_pred -hhhhhhcchhhhhhhhhc----CcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHh
Confidence 667999999999999862 333333334445556889999999999999999999983
No 63
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.99 E-value=0.007 Score=66.79 Aligned_cols=159 Identities=13% Similarity=0.139 Sum_probs=117.4
Q ss_pred HHHHHHHHH-----HHhhc-CCCCHHHHHHHHHHHHHcccCCCchh-hHHhcCCHHHHHHhcCCC-CHHHHHHHHHHHHH
Q 017926 129 DAQLIQIAI-----DDLNN-STLSLEDSQRALQELLILVEPIDNAN-DLSKLGGLSVLVGQLNHP-DTDIRKISAWILGK 200 (363)
Q Consensus 129 d~~lmk~al-----~~L~~-~~~s~e~k~~AL~~L~~Lve~iDnAn-~l~~lGgl~~Li~lL~s~-~~~Ir~~Aa~~Lgt 200 (363)
-++++|+.. .+|.. ...+.|.|.-|.-.|..+|++--.+. .....+.+.+.+..|+++ .+-+|...|-|||.
T Consensus 547 Q~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~ 626 (1387)
T KOG1517|consen 547 QADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGR 626 (1387)
T ss_pred HHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 457777732 33444 34567889888889999999976555 344455667778889885 79999999999999
Q ss_pred HhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC----CcccHHHH------------Hhc---CcHH
Q 017926 201 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN----NLAGQEMF------------YVE---AGDL 261 (363)
Q Consensus 201 ~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~----~~~a~~~f------------~~~---gG~~ 261 (363)
+=+|+++.|=.-.+.++..+|+.+|+++.++||..|++||+.++++ ++...... ++. .|.-
T Consensus 627 LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~ 706 (1387)
T KOG1517|consen 627 LWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLM 706 (1387)
T ss_pred HhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHH
Confidence 9999999998888999999999999999999999999999999997 44433222 111 1223
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 262 MLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 262 ~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
.++.+++.. .+-+|...+-.++.+..
T Consensus 707 ~ll~~vsdg--splvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 707 SLLALVSDG--SPLVRTEVVVALSHFVV 732 (1387)
T ss_pred HHHHHHhcc--chHHHHHHHHHHHHHHH
Confidence 455555554 34577777777777664
No 64
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.024 Score=62.82 Aligned_cols=139 Identities=18% Similarity=0.203 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHccc-CCCchhhHHh----cCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHH
Q 017926 147 LEDSQRALQELLILVE-PIDNANDLSK----LGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSK 220 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lve-~iDnAn~l~~----lGgl~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~ 220 (363)
.+..+-+|..|..++. +.|.|.-|.. +|.++.++.+|. +.++.|+..|..+|..++.|- .|-+.+...|.+..
T Consensus 1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~-~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANK-ECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhccc-HHHHHHHhhhHHHH
Confidence 3445567888888776 4688777654 788999988885 578999999999999888754 58888899999999
Q ss_pred HHHhhcCCCH--HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhh
Q 017926 221 LMKMVKSSFV--EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291 (363)
Q Consensus 221 Ll~LL~s~~~--~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~ 291 (363)
|+.||.+... +.....+|||++ ++....+-.++||+..|..++-..+ ....|..|+.++.-|....
T Consensus 1818 LL~lLHS~PS~R~~vL~vLYAL~S----~~~i~keA~~hg~l~yil~~~c~~~-~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1818 LLTLLHSQPSMRARVLDVLYALSS----NGQIGKEALEHGGLMYILSILCLTN-SDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHHHHhcChHHHHHHHHHHHHHhc----CcHHHHHHHhcCchhhhhHHHhccC-cHHHHHHHHHHHHHhhhcc
Confidence 9999998543 234467888876 3556677788999988888776553 4568899999999998654
No 65
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=96.87 E-value=0.0097 Score=51.89 Aligned_cols=128 Identities=10% Similarity=0.055 Sum_probs=95.7
Q ss_pred CCHHHHHHhc-CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHH
Q 017926 174 GGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (363)
Q Consensus 174 Ggl~~Li~lL-~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~ 252 (363)
+=+..|+.-. +..+.+-+.+..-=|++.+- .|..-..+.+.+++...+..|...+..+..-++.+|+++|-+ +.+.+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHH
Confidence 3345555444 45788888887777777774 688888899999999999999999988999999999999975 55666
Q ss_pred HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHH
Q 017926 253 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310 (363)
Q Consensus 253 ~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~ 310 (363)
-+.+++|++.++.+++++ +...-..++.++..|+. .+...++.+....++.
T Consensus 94 ~I~ea~g~plii~~lssp--~e~tv~sa~~~l~~l~~-----~~Rt~r~ell~p~Vv~ 144 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSP--PEITVHSAALFLQLLEF-----GERTERDELLSPAVVR 144 (173)
T ss_pred HHHHhcCCceEEeecCCC--hHHHHHHHHHHHHHhcC-----cccchhHHhccHHHHH
Confidence 677889999999999997 34455566666777764 3445566555544433
No 66
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.87 E-value=0.0033 Score=51.98 Aligned_cols=67 Identities=9% Similarity=0.030 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhH
Q 017926 232 EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 303 (363)
Q Consensus 232 v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l 303 (363)
+|...+..|++++-.++..|+.+.+.||+++++.+..-+..++.+|..|.|.|.+|+. .+++..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e-----~n~eNQ~~I 68 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCE-----GNPENQEFI 68 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHh-----CCHHHHHHH
Confidence 3566788999999999999999999999999999977666688999999999999996 354444443
No 67
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.79 E-value=0.021 Score=50.83 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=96.3
Q ss_pred chhhHHhcCCHHHHHHhcCCCC------HHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCC--HHHHHHHH
Q 017926 166 NANDLSKLGGLSVLVGQLNHPD------TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKAL 237 (363)
Q Consensus 166 nAn~l~~lGgl~~Li~lL~s~~------~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~--~~v~~kAL 237 (363)
.|..|++.||+..|+++++++. .++...+..+.-.+..-.--+. ..++...+.+++.++.... ..+...|+
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHH
Confidence 5889999999999999997654 4677777777777776433233 3455667888888888654 56788899
Q ss_pred HHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 238 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 238 ~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
.-|-+++-+.+.....+-+.=-++-|+..|+.. +..++.+|..++..|..
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~--~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVS--NQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC--CHHHHHHHHHHHHHHHh
Confidence 999999998877777777777789999999985 67799999999999986
No 68
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.79 E-value=0.016 Score=59.07 Aligned_cols=153 Identities=14% Similarity=0.116 Sum_probs=107.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHH
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
..+.-++..|...+ +.+.+..+.-.+.. .+.+. ++..|+..|.+.++++|..++..||.+-
T Consensus 54 ~a~~~L~~aL~~d~-~~ev~~~aa~al~~----~~~~~------~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------- 114 (410)
T TIGR02270 54 AATELLVSALAEAD-EPGRVACAALALLA----QEDAL------DLRSVLAVLQAGPEGLCAGIQAALGWLG-------- 114 (410)
T ss_pred hHHHHHHHHHhhCC-ChhHHHHHHHHHhc----cCChH------HHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence 34555666664322 33444444443332 12111 3889999999999999999999999542
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
..+..+.|+.+|+++++.++..++.+++. |+ ..-.+.+..+|++. +..++..|+..+..|-.
T Consensus 115 ---~~~a~~~L~~~L~~~~p~vR~aal~al~~--r~----------~~~~~~L~~~L~d~--d~~Vra~A~raLG~l~~- 176 (410)
T TIGR02270 115 ---GRQAEPWLEPLLAASEPPGRAIGLAALGA--HR----------HDPGPALEAALTHE--DALVRAAALRALGELPR- 176 (410)
T ss_pred ---chHHHHHHHHHhcCCChHHHHHHHHHHHh--hc----------cChHHHHHHHhcCC--CHHHHHHHHHHHHhhcc-
Confidence 23567889999999888888888866665 11 12234788888865 67799999999988853
Q ss_pred hhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhc
Q 017926 291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCG 335 (363)
Q Consensus 291 ~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~ 335 (363)
...++.|...+.+.|+.++..|+.++...+
T Consensus 177 ---------------~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 177 ---------------RLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ---------------ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 356677788888889999999999987443
No 69
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=96.73 E-value=0.037 Score=48.39 Aligned_cols=119 Identities=14% Similarity=0.041 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHh
Q 017926 145 LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (363)
Q Consensus 145 ~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~L 224 (363)
.+.|.|+...-+|..+.-+.-|-.-+..+..+..++..|..++..+.+.+...|+++|- .+...+.+++.+++|.++..
T Consensus 29 t~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ea~g~plii~~ 107 (173)
T KOG4646|consen 29 TNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIREALGLPLIIFV 107 (173)
T ss_pred ccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHHHhcCCceEEee
Confidence 36688888999999999998888999999999999999999999999999999999996 57788889999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHH
Q 017926 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 264 (363)
Q Consensus 225 L~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~ 264 (363)
++++...+...|+.++--+.-+...-.+.+..-..+..+.
T Consensus 108 lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~ 147 (173)
T KOG4646|consen 108 LSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQ 147 (173)
T ss_pred cCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHH
Confidence 9998766555566666555443333333343333333333
No 70
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.63 E-value=0.0048 Score=52.37 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=63.1
Q ss_pred CHHHHHHhc-CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 017926 175 GLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (363)
Q Consensus 175 gl~~Li~lL-~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~ 246 (363)
.+..|+.+| .+.++....-||.=||..++..|..+..+-+.|+=..++.|+.+++++|+..||.|+.-++.+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 466778888 566889999999999999999999999888889999999999999999999999999988765
No 71
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.53 E-value=0.023 Score=58.33 Aligned_cols=151 Identities=17% Similarity=0.156 Sum_probs=111.6
Q ss_pred cCCHHHHHHhcCCCC--HHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCcc
Q 017926 173 LGGLSVLVGQLNHPD--TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLA 249 (363)
Q Consensus 173 lGgl~~Li~lL~s~~--~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~-~~~v~~kAL~ALSsLiR~~~~ 249 (363)
-||+..|+.++.+++ ..+|..|+.+|-.+.. .+..+.+...| +..++.+.+.. ..+.++..+.-|.++-+|...
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 489999999998875 4569999999987764 23566777666 67777777654 356788899999999999888
Q ss_pred cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHH
Q 017926 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFL 329 (363)
Q Consensus 250 a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~ 329 (363)
-...++..||++.++.-.+.. ++.+-+.++.++.+.+.+ ...+....+++.....-|.-+-.+.|.-++-+|..
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt--~P~lLRH~ALAL~N~~L~----~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRT--DPALLRHCALALGNCALH----GGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred HHHHHHhhcccchheeecccC--CHHHHHHHHHHhhhhhhh----chhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 888999999999888777664 566788888888888764 34455556666555555555545556667777766
Q ss_pred HHH
Q 017926 330 EHV 332 (363)
Q Consensus 330 aL~ 332 (363)
|+.
T Consensus 330 AV~ 332 (832)
T KOG3678|consen 330 AVA 332 (832)
T ss_pred HHh
Confidence 654
No 72
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.47 E-value=0.087 Score=53.39 Aligned_cols=187 Identities=18% Similarity=0.108 Sum_probs=126.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHh-------cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK-------LGGLSVLVGQLNHPDTDIRKISAWILGKASQ 203 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~-------lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aq 203 (363)
+..+--+..+.... .++...-+|--+.++...-....++.+ ---|.+.+++|...+.-+...++|+|+.+++
T Consensus 65 ~~v~~fi~LlS~~~-kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHID-KDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhh-hHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 44444444444332 334444455545554443333332222 2358999999999999999999999999998
Q ss_pred cChHH---HHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHH
Q 017926 204 NNPLV---QKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 279 (363)
Q Consensus 204 NNp~~---Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~k 279 (363)
+-+.. .+.-+..|. |-.++++ .+.....-|+.+|..++|. ++.+..|..++|+..++..+.+...+..+|=.
T Consensus 144 ~g~~~~~~~e~~~~~~~---l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYq 219 (442)
T KOG2759|consen 144 FGNCKMELSELDVYKGF---LKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQ 219 (442)
T ss_pred hccccccchHHHHHHHH---HHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHH
Confidence 53321 111122233 3334444 4455677889999999996 66789999999999999999655567889999
Q ss_pred HHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHH
Q 017926 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEH 331 (363)
Q Consensus 280 A~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL 331 (363)
..|++--|+. ++...+.+..-+.++.|.++++. ..+||+.+.+
T Consensus 220 sifciWlLtF------n~~~ae~~~~~~li~~L~~Ivk~---~~KEKV~Riv 262 (442)
T KOG2759|consen 220 SIFCIWLLTF------NPHAAEKLKRFDLIQDLSDIVKE---STKEKVTRIV 262 (442)
T ss_pred HHHHHHHhhc------CHHHHHHHhhccHHHHHHHHHHH---HHHHHHHHHH
Confidence 9999888875 56667778888999999999986 4666665553
No 73
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.47 E-value=0.048 Score=56.08 Aligned_cols=154 Identities=13% Similarity=0.124 Sum_probs=115.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChHHHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQ 211 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~ 211 (363)
....+..+..+......+..+-.-||++.-. .|-..+...| +..++.+-+ ...+++....+.+|+++-...++.-..
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~ 259 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQR 259 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3445666666665446688887777775432 3444555555 555555553 567899999999999999876666667
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 212 ~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~-~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
+++.|++..++--.+-.++.+-+.+..||+++.-+ ....+...++-...+.|..+-.+. |.-+|..|+.++.-|++.
T Consensus 260 Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk--Del~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 260 LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK--DELLRLHACLAVAVLATN 337 (832)
T ss_pred HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch--HHHHHHHHHHHHhhhhhh
Confidence 88999999998888887888888888899986554 566778888888888888887765 667899999999988863
No 74
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.04 Score=59.03 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=28.7
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhccChH
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPL 207 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~ 207 (363)
.+|-|.+=|..+++.|+..|..+||.+|.-||+
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 467778888899999999999999999988873
No 75
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.31 E-value=0.1 Score=56.83 Aligned_cols=135 Identities=16% Similarity=0.197 Sum_probs=103.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~ 255 (363)
++-+++...+.|.++|...=--+-..++.+| +..++ +++.+.+=++++++.+|.-|+..+|.+ |. ..+.
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l-~~-----~el~ 125 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALL---AVNTIQKDLQDPNEEIRGFALRTLSLL-RV-----KELL 125 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHH---HHHHHHhhccCCCHHHHHHHHHHHHhc-Ch-----HHHH
Confidence 6667777778889999888888888888888 33333 467788888888888899999998887 32 1122
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 256 ~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
-.-++.+.+++.++ +..+|+.|+.++..+-. -+ ...+.+.|.+..+..++...|+.+.-.|+.+|.
T Consensus 126 -~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~-----ld---~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~ 191 (757)
T COG5096 126 -GNIIDPIKKLLTDP--HAYVRKTAALAVAKLYR-----LD---KDLYHELGLIDILKELVADSDPIVIANALASLA 191 (757)
T ss_pred -HHHHHHHHHHccCC--cHHHHHHHHHHHHHHHh-----cC---HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHH
Confidence 13467888888887 56789999999988874 12 345667888888899988889999998888887
No 76
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.033 Score=57.39 Aligned_cols=122 Identities=17% Similarity=0.142 Sum_probs=96.7
Q ss_pred CCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHH
Q 017926 163 PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVS 241 (363)
Q Consensus 163 ~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~-~v~~kAL~ALS 241 (363)
-.+|-+.+..+|-++.|+++....+++++......+-++.-+ ...+..++..|.+|.|..+|.++.. .++.+.+|-+|
T Consensus 334 f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S 412 (791)
T KOG1222|consen 334 FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLS 412 (791)
T ss_pred hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhc
Confidence 458899999999999999999999999999999999988864 3467788999999999999999764 67889999998
Q ss_pred HHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 242 SLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 242 sLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
+ +......|.-...++.+...+-+. ++.++-.....+.-+||.+
T Consensus 413 ~----dD~~K~MfayTdci~~lmk~v~~~-~~~~vdl~lia~ciNl~ln 456 (791)
T KOG1222|consen 413 C----DDDAKAMFAYTDCIKLLMKDVLSG-TGSEVDLALIALCINLCLN 456 (791)
T ss_pred c----CcHHHHHHHHHHHHHHHHHHHHhc-CCceecHHHHHHHHHHHhc
Confidence 7 355667777778888887766544 2444555555555677653
No 77
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.17 E-value=0.0091 Score=42.87 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 017926 231 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (363)
Q Consensus 231 ~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L 287 (363)
.+|..|+++|+.+..+.+..... +....++.|..+|+++ +..+|..|++.|.+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~--~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD--DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS--SHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC--CHHHHHHHHHHHhcC
Confidence 57899999999988877665544 4457889999999886 447999999999865
No 78
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.16 E-value=0.089 Score=46.93 Aligned_cols=130 Identities=12% Similarity=0.150 Sum_probs=93.1
Q ss_pred HHHHHHcCcHHHHHHhhcCCCH------HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 017926 209 QKQVLELGALSKLMKMVKSSFV------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (363)
Q Consensus 209 Q~~~le~G~lp~Ll~LL~s~~~------~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~ 282 (363)
...|++.||++.|++++.++.. +.-..+|.|...+..|.--..+ .....=+..++........+..+...+..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHHH
Confidence 4568899999999999998763 3445677777777766443332 33333345666666665556778899999
Q ss_pred HHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhcccccCchhhhhH
Q 017926 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCGLVFCTCPCIVRG 347 (363)
Q Consensus 283 lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~~~~~~~~~~~r~ 347 (363)
.+.+++. ..+.....+.++=-++.|+.+|+.++.++|-.++.-+. ++...+++.-|.
T Consensus 83 ILEs~Vl-----~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLin---AL~~kA~~~~r~ 139 (160)
T PF11841_consen 83 ILESIVL-----NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALIN---ALFLKADDSKRK 139 (160)
T ss_pred HHHHHHh-----CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHH---HHHhcCChHHHH
Confidence 9999995 34455667777778899999999999999998877666 444555665553
No 79
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.10 E-value=0.47 Score=46.66 Aligned_cols=190 Identities=16% Similarity=0.104 Sum_probs=111.2
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHh--cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcc---ChH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQLNHPDTDIRKISAWILGKASQN---NPL 207 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~--lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN---Np~ 207 (363)
++++|..+.+. ....|+.+|..+..++...=....+.+ .-.+..+.+.++....+=+..|+.+++-++=. .+.
T Consensus 45 L~~~Id~l~eK--~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEK--SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 55666666544 357788888888887654432322222 23466777888777667778898988887532 233
Q ss_pred HHHHHHHcCcHHHHHHhhcCCCH--HHHHHHHHHHHHHhc--C-CcccHHHHHhcCcHH--HHHHhhcCCC--------c
Q 017926 208 VQKQVLELGALSKLMKMVKSSFV--EEAVKALYTVSSLIR--N-NLAGQEMFYVEAGDL--MLQDILGNSS--------F 272 (363)
Q Consensus 208 ~Q~~~le~G~lp~Ll~LL~s~~~--~v~~kAL~ALSsLiR--~-~~~a~~~f~~~gG~~--~L~~lL~s~~--------~ 272 (363)
.. .+++ ...|.|.+++...+. ..|..+++||+-++- . .+....... ..++ ....+.+++. .
T Consensus 123 ~~-ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~ 198 (309)
T PF05004_consen 123 SE-EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAED 198 (309)
T ss_pred HH-HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCC
Confidence 33 3343 478899999887653 456677777775432 2 222121111 1222 1112222221 1
Q ss_pred cHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 273 EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 273 ~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
+..+...|+..-+-|++. .+........ ...++.|+++|.++|.++|..|-.+|.+
T Consensus 199 ~~~l~~aAL~aW~lLlt~----~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAl 254 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTT----LPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIAL 254 (309)
T ss_pred ccHHHHHHHHHHHHHHhc----CCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 234666666655555542 2221122222 3468999999999999999999999884
No 80
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.07 E-value=0.22 Score=50.50 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhccCh
Q 017926 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQNNP 206 (363)
Q Consensus 129 d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~~Lgt~aqNNp 206 (363)
+-++-+.-++.+-+.+.+.+-...+..-|..++.-....-.|....|...++..|.+ .+-.++-+.+.|+=-++- ||
T Consensus 153 e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~ 231 (442)
T KOG2759|consen 153 ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NP 231 (442)
T ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CH
Confidence 455555555555444445566677777788888878888899999999999998833 456677777777777776 45
Q ss_pred HHHHHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCcc------------------------------------
Q 017926 207 LVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLA------------------------------------ 249 (363)
Q Consensus 207 ~~Q~~~le~G~lp~Ll~LL~s~~~-~v~~kAL~ALSsLiR~~~~------------------------------------ 249 (363)
...+.+...+.|+.|.+++++... .|-+-.+..+-+++-..+.
T Consensus 232 ~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~d 311 (442)
T KOG2759|consen 232 HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDD 311 (442)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHH
Confidence 555667777999999999987542 3433444444455443321
Q ss_pred --------------------------------------------cHHHHHhc--CcHHHHHHhhcCCCccHHHHHHHHHH
Q 017926 250 --------------------------------------------GQEMFYVE--AGDLMLQDILGNSSFEIRLHRKAVSL 283 (363)
Q Consensus 250 --------------------------------------------a~~~f~~~--gG~~~L~~lL~s~~~~~klr~kA~~l 283 (363)
+.+.|.+- .-+..|+.+|+.++ |+.+---|++=
T Consensus 312 i~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~-Dp~iL~VAc~D 390 (442)
T KOG2759|consen 312 IEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN-DPIILCVACHD 390 (442)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC-CCceeehhhhh
Confidence 33344432 24556666666553 23333445555
Q ss_pred HHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 284 L~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
|...+. ..|..+..+.+.|+=..+++++.++|++++=+|+.|+-
T Consensus 391 Ige~Vr-----~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ 434 (442)
T KOG2759|consen 391 IGEYVR-----HYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQ 434 (442)
T ss_pred HHHHHH-----hCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHH
Confidence 555554 46777888889999999999999999999999999876
No 81
>PF05536 Neurochondrin: Neurochondrin
Probab=96.05 E-value=0.12 Score=54.71 Aligned_cols=149 Identities=13% Similarity=0.066 Sum_probs=113.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHH---HHHHHcCcHHHHHHhhcCC-------CHHHHHHHHHHHHHHhc
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ---KQVLELGALSKLMKMVKSS-------FVEEAVKALYTVSSLIR 245 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q---~~~le~G~lp~Ll~LL~s~-------~~~v~~kAL~ALSsLiR 245 (363)
+.-.+.+|++.+.+=|..+.-.+.+++.+++..+ +.+.+.=+.+-|-+||.+. ....+.-|+.-|++.++
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 4556788888888889999999999999877433 4577876678888899873 23457778888899888
Q ss_pred CCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHH
Q 017926 246 NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQE 325 (363)
Q Consensus 246 ~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE 325 (363)
. |.....-.-.+=++.|++++.+.. +..+...+..+|..++. .++-...+.+.|.++.|++.+.+ ....+|
T Consensus 87 ~-~~~a~~~~~~~~IP~Lle~l~~~s-~~~~v~dalqcL~~Ias------~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E 157 (543)
T PF05536_consen 87 D-PELASSPQMVSRIPLLLEILSSSS-DLETVDDALQCLLAIAS------SPEGAKALLESGAVPALCEIIPN-QSFQME 157 (543)
T ss_pred C-hhhhcCHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHHHc------CcHhHHHHHhcCCHHHHHHHHHh-CcchHH
Confidence 3 332222222367899999998763 33577889999999984 67888999999999999999988 666788
Q ss_pred HHHHHHHh
Q 017926 326 KVFLEHVF 333 (363)
Q Consensus 326 ~al~aL~~ 333 (363)
.++..+..
T Consensus 158 ~Al~lL~~ 165 (543)
T PF05536_consen 158 IALNLLLN 165 (543)
T ss_pred HHHHHHHH
Confidence 88888773
No 82
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.077 Score=52.53 Aligned_cols=142 Identities=11% Similarity=0.061 Sum_probs=104.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCh--HHHHH--HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNP--LVQKQ--VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 251 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp--~~Q~~--~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~ 251 (363)
.|.|-.-|.+++..++..||.-||.+..|.+ .+.+. +++.|.+|.++..+..++.+|...|+-.|+.+.+ +|.+.
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaal 162 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAAL 162 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHH
Confidence 3445556788999999999999999999876 33333 4588999999999999999999999999999987 68888
Q ss_pred HHHHhcCcHHHH--HHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHHH
Q 017926 252 EMFYVEAGDLML--QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQE 325 (363)
Q Consensus 252 ~~f~~~gG~~~L--~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE 325 (363)
..+...+-.+.+ +.+--.. +.-.|.+...+|--+.+ ..+.........|++..|..-|+.. |.-++-
T Consensus 163 eaiFeSellDdlhlrnlaakc--ndiaRvRVleLIieifS-----iSpesaneckkSGLldlLeaElkGteDtLVia 232 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKC--NDIARVRVLELIIEIFS-----ISPESANECKKSGLLDLLEAELKGTEDTLVIA 232 (524)
T ss_pred HHhcccccCChHHHhHHHhhh--hhHHHHHHHHHHHHHHh-----cCHHHHhHhhhhhHHHHHHHHhcCCcceeehh
Confidence 888876555433 3332222 33478888888888875 3556666677788888887777653 543333
No 83
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.87 E-value=0.013 Score=37.57 Aligned_cols=29 Identities=31% Similarity=0.573 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQN 204 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN 204 (363)
+|.+++++++++++||..|+++|+.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999863
No 84
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=95.79 E-value=0.068 Score=55.12 Aligned_cols=134 Identities=20% Similarity=0.254 Sum_probs=96.8
Q ss_pred HHHHHHHcccCCCchhhHHhcCCHHHHHHhc----------CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHH
Q 017926 153 ALQELLILVEPIDNANDLSKLGGLSVLVGQL----------NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (363)
Q Consensus 153 AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL----------~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll 222 (363)
+|+.|..|-.+..++..+..-.|+..|+.+- ...+.++...|..||+++.=++|..|+.+.+.|+.+.++
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 3566777777888888888888888887654 346899999999999999999999999999999999999
Q ss_pred HhhcCC-----CHHH---HHHHHHHHHHHhcCCcccHH-HHHhcCcHHHHHHhhcC--------CC-------ccHHHHH
Q 017926 223 KMVKSS-----FVEE---AVKALYTVSSLIRNNLAGQE-MFYVEAGDLMLQDILGN--------SS-------FEIRLHR 278 (363)
Q Consensus 223 ~LL~s~-----~~~v---~~kAL~ALSsLiR~~~~a~~-~f~~~gG~~~L~~lL~s--------~~-------~~~klr~ 278 (363)
..|+.. +.++ ..+-++-+.++. +..+. .+.+++|+..|...|.. .. .+...-.
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~---~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~ 157 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALR---PDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALS 157 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHH
Confidence 999876 3332 346666555542 23344 44456888888876521 10 1334456
Q ss_pred HHHHHHHHHhh
Q 017926 279 KAVSLVGDLAK 289 (363)
Q Consensus 279 kA~~lL~~L~~ 289 (363)
.++.++.++..
T Consensus 158 EiLKllFNit~ 168 (446)
T PF10165_consen 158 EILKLLFNITL 168 (446)
T ss_pred HHHHHHHHhhh
Confidence 66777777765
No 85
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.59 E-value=0.67 Score=47.41 Aligned_cols=89 Identities=20% Similarity=0.034 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHH
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
......+..|.+. ++..+..++..+.. ....-.++++.+|+++++.+|..|+.+||.+-.
T Consensus 117 ~a~~~L~~~L~~~--~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------- 176 (410)
T TIGR02270 117 QAEPWLEPLLAAS--EPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPR------- 176 (410)
T ss_pred HHHHHHHHHhcCC--ChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-------
Confidence 3344444555332 44555566655544 222346788899999999999999999998754
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 017926 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 243 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsL 243 (363)
..++|.|...+.+.++.||..|+.+++-+
T Consensus 177 ----~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 177 ----RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred ----ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 35678888889998999999999888655
No 86
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.54 E-value=0.15 Score=45.78 Aligned_cols=90 Identities=21% Similarity=0.217 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc--HHHHH
Q 017926 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQ 264 (363)
Q Consensus 187 ~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG--~~~L~ 264 (363)
++.||..+..++|.++...|..-+ ..+|.+...|.++++.||..|+..|+.++.++. ++..| +..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~------ik~k~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM------IKVKGQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc------eeehhhhhHHHH
Confidence 578999999999999998775444 358999999999999999999999999987532 23323 36677
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 265 DILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 265 ~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
.++.++ +..+|.-|..++..+..
T Consensus 70 ~~l~D~--~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 70 KLLVDE--NPEIRSLARSFFSELLK 92 (178)
T ss_pred HHHcCC--CHHHHHHHHHHHHHHHH
Confidence 777766 67799999999999885
No 87
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.065 Score=55.89 Aligned_cols=155 Identities=12% Similarity=0.175 Sum_probs=117.9
Q ss_pred cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCccc-H
Q 017926 173 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-Q 251 (363)
Q Consensus 173 lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a-~ 251 (363)
....++|+++|.+++..|...+...+++.+-.-...|..|++.|.|..|+.++.+.+..++.+.+|.+-.++-|+... +
T Consensus 430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 445688999999988888888999999888766668999999999999999999988899999999999998887665 3
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh----CCcHHHHHHhccCCC-hhHHHH
Q 017926 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD----RFFLKSVVDLTASAD-LDLQEK 326 (363)
Q Consensus 252 ~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~----~g~v~~Lv~lL~~~d-~~lqE~ 326 (363)
-+|+...|++.++.+..++ .-+++.....++.+++-.. .-++...+.+.. .=+.+.+++.+...+ .++++.
T Consensus 510 f~~Lakig~~kvl~~~NDp--c~~vq~q~lQilrNftc~~--~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~ 585 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDP--CFKVQHQVLQILRNFTCDT--SKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEG 585 (743)
T ss_pred hhhHHhcCHHHHHHHhcCc--ccccHHHHHHHHHhccccc--ccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhh
Confidence 4788899999999999887 6789999999999997310 012223332222 125567777777664 455555
Q ss_pred HHHHH
Q 017926 327 VFLEH 331 (363)
Q Consensus 327 al~aL 331 (363)
.-.-+
T Consensus 586 ~yilv 590 (743)
T COG5369 586 CYILV 590 (743)
T ss_pred HHHHH
Confidence 43333
No 88
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.47 E-value=0.34 Score=49.35 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=79.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChHH-------------HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLV-------------QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 242 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~-------------Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSs 242 (363)
+..|+.+|.+ +++...||..++.+....+.+ ++++.. -.+|.|++-.++.+.+.+..-+.|||.
T Consensus 273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 4456666665 788899999999999874433 333332 368999999998777788899999999
Q ss_pred HhcCCcccHHHHHh--cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 243 LIRNNLAGQEMFYV--EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 243 LiR~~~~a~~~f~~--~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
++++-|... +.. ..-+++|++.|..+ +..++..++..+..+..
T Consensus 350 ll~~vP~~v--l~~~l~~LlPLLlqsL~~~--~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 350 LLKNVPKSV--LLPELPTLLPLLLQSLSLP--DADVLLSSLETLKMILE 394 (415)
T ss_pred HHhhCCHHH--HHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Confidence 999877432 222 24578999999876 45688899999999885
No 89
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.41 E-value=0.079 Score=43.30 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=51.2
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~--G~lp~Ll~LL~s~~~~v~~kAL~ALSsLi 244 (363)
-++|++.+++.++..||..||.+|.+++.. .+..++.+ ..++.|.+++.+.++.|+..| .-|-.++
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 489999999999999999999999999864 45555544 678888888888887776544 4444443
No 90
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.37 E-value=0.58 Score=41.62 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=71.3
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-HHHHHHHHcCcHHHHHHhhcC---------CCHHHHHHHHHHHHHHh
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS---------SFVEEAVKALYTVSSLI 244 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp-~~Q~~~le~G~lp~Ll~LL~s---------~~~~v~~kAL~ALSsLi 244 (363)
.-..++..|.+..... ....-|...-.++| .--+.|++.||+..|+.+|.. ........++.+|-+|+
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3445667676544332 22333333333443 335568899999999998863 12345678888888887
Q ss_pred cCCcccHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 245 RNNLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 245 R~~~~a~~~f~~-~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
. +..+...++. .+++..|..+|.++ +.++|.-++-+|+.+|
T Consensus 145 n-~~~G~~~v~~~~~~v~~i~~~L~s~--~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 N-TKYGLEAVLSHPDSVNLIALSLDSP--NIKTRKLALEILAALC 186 (187)
T ss_dssp S-SHHHHHHHHCSSSHHHHHHHT--TT--SHHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHcCcHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Confidence 4 5677887777 57899999999987 6789999999999887
No 91
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.34 E-value=0.66 Score=50.72 Aligned_cols=160 Identities=14% Similarity=0.187 Sum_probs=104.3
Q ss_pred HhHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHH
Q 017926 112 KRQMEIKELMEKLK-TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190 (363)
Q Consensus 112 ~r~~~Lkeal~~l~-~~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~I 190 (363)
+|.+-+|..+..|. |.+-..+...-++-.. +.+.|-|.-.---++.+.+. +. +...+ .+..+..=|+++|+.|
T Consensus 35 ~kidAmK~iIa~M~~G~dmssLf~dViK~~~--trd~ElKrL~ylYl~~yak~-~P--~~~lL-avNti~kDl~d~N~~i 108 (757)
T COG5096 35 KKIDAMKKIIAQMSLGEDMSSLFPDVIKNVA--TRDVELKRLLYLYLERYAKL-KP--ELALL-AVNTIQKDLQDPNEEI 108 (757)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHhcc-CH--HHHHH-HHHHHHhhccCCCHHH
Confidence 56777777777764 5553334344444333 33555554333333333222 11 22211 3556667788999999
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCC
Q 017926 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (363)
Q Consensus 191 r~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~ 270 (363)
|..|.+.++.+=- ++ +-...++++.+++.++.+.||.+|++||..+-|-. .+.+.+.|-...+..++.+.
T Consensus 109 R~~AlR~ls~l~~--~e-----l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~l~~D~ 178 (757)
T COG5096 109 RGFALRTLSLLRV--KE-----LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKELVADS 178 (757)
T ss_pred HHHHHHHHHhcCh--HH-----HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHHHhhCC
Confidence 9999999997732 21 22346899999999999999999999999996543 46677777788888888765
Q ss_pred CccHHHHHHHHHHHHHHhh
Q 017926 271 SFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 271 ~~~~klr~kA~~lL~~L~~ 289 (363)
++.+...|...+..+..
T Consensus 179 --dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 179 --DPIVIANALASLAEIDP 195 (757)
T ss_pred --CchHHHHHHHHHHHhch
Confidence 55677788877776653
No 92
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.28 E-value=0.87 Score=45.98 Aligned_cols=156 Identities=15% Similarity=0.063 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHh
Q 017926 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~L 224 (363)
.+.+..++..+.+++.+.+.-..+.+.+.=..++..|.. .+..=|++|...+..+..-....+ .+-.|.+..++.+
T Consensus 39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~--~~~~~vvralvai 116 (371)
T PF14664_consen 39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK--EIPRGVVRALVAI 116 (371)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHH
Confidence 688999999999999999999999999876677777753 456678899999998876421111 1355889999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHH
Q 017926 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (363)
Q Consensus 225 L~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~ 304 (363)
..+.++..+.-|+-.|+-++-.+| +.+...||+..|.+.+.++. ..+....+..+-++.. .|..+..+.
T Consensus 117 ae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~--~~~~~~l~~~lL~lLd------~p~tR~yl~ 185 (371)
T PF14664_consen 117 AEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGS--FSISESLLDTLLYLLD------SPRTRKYLR 185 (371)
T ss_pred HhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhcc--HhHHHHHHHHHHHHhC------Ccchhhhhc
Confidence 999889999999999999888776 67889999999999998752 3366677777777774 556666555
Q ss_pred hCCcHHHHHHh
Q 017926 305 DRFFLKSVVDL 315 (363)
Q Consensus 305 ~~g~v~~Lv~l 315 (363)
..--+..+..-
T Consensus 186 ~~~dL~~l~ap 196 (371)
T PF14664_consen 186 PGFDLESLLAP 196 (371)
T ss_pred CCccHHHHHHh
Confidence 43334444433
No 93
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.17 E-value=0.77 Score=44.75 Aligned_cols=88 Identities=19% Similarity=0.195 Sum_probs=61.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~ 212 (363)
....++.+.+. +...|..|...+.+ +...-.++++..+|.+.++.+|..|+.+||.+- +|
T Consensus 45 ~~~~~~~l~~~--~~~vr~~aa~~l~~----------~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~------ 104 (335)
T COG1413 45 ADELLKLLEDE--DLLVRLSAAVALGE----------LGSEEAVPLLRELLSDEDPRVRDAAADALGELG--DP------ 104 (335)
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHhh----------hchHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch------
Confidence 44455555554 45566666554222 112235778889999999999999999888653 22
Q ss_pred HHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHH
Q 017926 213 LELGALSKLMKMVKS-SFVEEAVKALYTVSSL 243 (363)
Q Consensus 213 le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsL 243 (363)
..+|.|++++.+ ++..+|..+.++|..+
T Consensus 105 ---~a~~~li~~l~~d~~~~vR~~aa~aL~~~ 133 (335)
T COG1413 105 ---EAVPPLVELLENDENEGVRAAAARALGKL 133 (335)
T ss_pred ---hHHHHHHHHHHcCCcHhHHHHHHHHHHhc
Confidence 468999999985 6678899999999887
No 94
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.14 E-value=0.35 Score=44.47 Aligned_cols=133 Identities=14% Similarity=0.023 Sum_probs=84.3
Q ss_pred HHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCH
Q 017926 151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV 230 (363)
Q Consensus 151 ~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~ 230 (363)
..|+.-+..++......-+-.--..+|+|+..+.++..-|+..|..+|-+++++.+..... .++.+....++.++
T Consensus 71 ~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~ 145 (228)
T PF12348_consen 71 KTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNP 145 (228)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-H
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCH
Confidence 4567777777666543322122235788889999999999999999999999986621221 15666677788888
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHhc----CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 231 EEAVKALYTVSSLIRNNLAGQEMFYVE----AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 231 ~v~~kAL~ALSsLiR~~~~a~~~f~~~----gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
.+|..++..+..++..++.....+... .-.+.+..++.+. +..+|..|-.++..+...
T Consensus 146 ~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~--~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 146 QVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDA--DPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHH
Confidence 999999999999988877222222222 2456777778877 567888888888887653
No 95
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.07 E-value=0.15 Score=53.79 Aligned_cols=84 Identities=13% Similarity=0.193 Sum_probs=61.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHh
Q 017926 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (363)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~ 256 (363)
..++..-+ .+...+..|+..|......-|..|+. +|..+++|..+++..+|+.|+..|..+|++++.....+
T Consensus 26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-- 97 (556)
T PF05918_consen 26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-- 97 (556)
T ss_dssp HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH--
T ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH--
Confidence 33444444 47899999999999999999999987 56789999999999999999999999999988766554
Q ss_pred cCcHHHHHHhhcCCC
Q 017926 257 EAGDLMLQDILGNSS 271 (363)
Q Consensus 257 ~gG~~~L~~lL~s~~ 271 (363)
.++|+++|+++.
T Consensus 98 ---aDvL~QlL~tdd 109 (556)
T PF05918_consen 98 ---ADVLVQLLQTDD 109 (556)
T ss_dssp ---HHHHHHHTT---
T ss_pred ---HHHHHHHHhccc
Confidence 468999998863
No 96
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=1 Score=48.85 Aligned_cols=195 Identities=12% Similarity=0.013 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcC---CH---------HHHHHhcCCCCHHHHHHHHH
Q 017926 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLG---GL---------SVLVGQLNHPDTDIRKISAW 196 (363)
Q Consensus 129 d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lG---gl---------~~Li~lL~s~~~~Ir~~Aa~ 196 (363)
=+.-+...-++|.|...+..-|..|--.|-.-+...|....-.-.. ++ ..++.-|.++.|.....|+.
T Consensus 33 f~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq 112 (859)
T KOG1241|consen 33 FPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQ 112 (859)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHH
Confidence 3445555556666665555556555555555444444322111100 11 12345567788899999999
Q ss_pred HHHHHhcc-ChHHHHHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCcccHHHHHhc-CcHHHHHHhhcCCCcc
Q 017926 197 ILGKASQN-NPLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNSSFE 273 (363)
Q Consensus 197 ~Lgt~aqN-Np~~Q~~~le~G~lp~Ll~LL~s~~~-~v~~kAL~ALSsLiR~~~~a~~~f~~~-gG~~~L~~lL~s~~~~ 273 (363)
|++.+|-- =|..|= -+.++.|+....++.. .++..++-||+-+|.+-.|. ...... ..+..++.-++...++
T Consensus 113 ~va~IA~~ElP~n~w----p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s 187 (859)
T KOG1241|consen 113 CVAAIACIELPQNQW----PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRKEETS 187 (859)
T ss_pred HHHHHHHhhCchhhC----HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccccCCc
Confidence 99988741 111110 1455666666665544 47899999999999885553 222233 4566777777766567
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 274 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 274 ~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
..+|.-|..+|.+=.... ...+......+-++.-+++.-+++|..++-+|+.||.
T Consensus 188 ~~vRLaa~~aL~nsLef~----~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~Clv 242 (859)
T KOG1241|consen 188 AAVRLAALNALYNSLEFT----KANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLV 242 (859)
T ss_pred hhHHHHHHHHHHHHHHHH----HHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHH
Confidence 788989988887655321 1111122222334455566677889999999999987
No 97
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=94.92 E-value=0.092 Score=49.78 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=43.4
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhccChHHH-HHHHHcCcHHHHHHhhcCCCH
Q 017926 176 LSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQ-KQVLELGALSKLMKMVKSSFV 230 (363)
Q Consensus 176 l~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNNp~~Q-~~~le~G~lp~Ll~LL~s~~~ 230 (363)
+..|+++|. .+++-.|+.|.-+|.++++...... ....+.+.|..|+..+.....
T Consensus 174 ~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 174 FHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 445667774 5789999999999999999766555 555677999999999987543
No 98
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.72 E-value=0.056 Score=34.50 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=26.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 017926 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (363)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~ 246 (363)
.+|.+++++++++..||..|+++|+.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 379999999999999999999999999875
No 99
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.66 E-value=0.83 Score=49.64 Aligned_cols=140 Identities=14% Similarity=0.147 Sum_probs=87.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcH-HHHHHhhcCCCHHHH---HHHHHHHHHHh---cCCcccH
Q 017926 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL-SKLMKMVKSSFVEEA---VKALYTVSSLI---RNNLAGQ 251 (363)
Q Consensus 179 Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~l-p~Ll~LL~s~~~~v~---~kAL~ALSsLi---R~~~~a~ 251 (363)
++..|++.++.+|.+||..++.++---..|++.-+ .|-+ -.|...|..+.+++- .+|++||-|.+ +-+||..
T Consensus 804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~-m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~ 882 (1172)
T KOG0213|consen 804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKL-MGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIK 882 (1172)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHH-HHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChh
Confidence 34577899999999999999999864334444321 1112 246678888777764 46666666655 1134432
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHH
Q 017926 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEH 331 (363)
Q Consensus 252 ~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL 331 (363)
+-++-|..+|++. ..|++....-++..++.. .++....=.=...|--|+++|+..+..++..+..++
T Consensus 883 ------dllPrltPILknr--heKVqen~IdLvg~Iadr-----gpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTf 949 (1172)
T KOG0213|consen 883 ------DLLPRLTPILKNR--HEKVQENCIDLVGTIADR-----GPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTF 949 (1172)
T ss_pred ------hhcccchHhhhhh--HHHHHHHHHHHHHHHHhc-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5578888899887 689999999999999863 222211100123444556666655555555554443
Q ss_pred H
Q 017926 332 V 332 (363)
Q Consensus 332 ~ 332 (363)
+
T Consensus 950 G 950 (1172)
T KOG0213|consen 950 G 950 (1172)
T ss_pred h
Confidence 3
No 100
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=94.56 E-value=1.4 Score=46.61 Aligned_cols=168 Identities=14% Similarity=0.094 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc--cChHHHHHHHHcCcHHHHHHhh
Q 017926 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ--NNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aq--NNp~~Q~~~le~G~lp~Ll~LL 225 (363)
..|..+++-+.-+.+..+-.-.++--..+|.+.+-|.++.++||..+-.+|-.++. .||.+|.. +|.|++-+
T Consensus 269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~------ip~Lld~l 342 (569)
T KOG1242|consen 269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKI------IPTLLDAL 342 (569)
T ss_pred hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHH------HHHHHHHh
Confidence 45778888888777777777777777889999999999999999999999987775 68887775 79999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCC--CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhH
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 303 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~--~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l 303 (363)
.+++.. -.+++..|+.- .+ -.+++.-.+.+++.+|+.. .-+..++++++-.+-++|... .|+....-+
T Consensus 343 ~dp~~~-~~e~~~~L~~t--tF----V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv---eDp~~lapf 412 (569)
T KOG1242|consen 343 ADPSCY-TPECLDSLGAT--TF----VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV---EDPKDLAPF 412 (569)
T ss_pred cCcccc-hHHHHHhhcce--ee----eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh---cCHHHHhhh
Confidence 886632 22334433321 11 1122334566666665432 113346799999999999742 232222211
Q ss_pred HhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 304 RDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 304 ~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
. ..++|.+-..+....+++|+-+++||.
T Consensus 413 l-~~Llp~lk~~~~d~~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 413 L-PSLLPGLKENLDDAVPEVRAVAARALG 440 (569)
T ss_pred H-HHHhhHHHHHhcCCChhHHHHHHHHHH
Confidence 1 123344444444558999999999974
No 101
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=2.7 Score=43.30 Aligned_cols=175 Identities=17% Similarity=0.095 Sum_probs=125.9
Q ss_pred HHHHHHHHHcccCC-CchhhHHhcCCHHHHHH-hc-CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcC
Q 017926 151 QRALQELLILVEPI-DNANDLSKLGGLSVLVG-QL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 227 (363)
Q Consensus 151 ~~AL~~L~~Lve~i-DnAn~l~~lGgl~~Li~-lL-~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s 227 (363)
..++-.++.+++-- +.+...++.|.+.-|+. +- ..+-...+.+|..+++-+-||+...+...-..+++-.|++-+.-
T Consensus 200 ~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~ 279 (536)
T KOG2734|consen 200 HNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAV 279 (536)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcch
Confidence 45566666666643 45666666777776665 33 34667888999999999999999999988888999999887641
Q ss_pred ----C-----CHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCC
Q 017926 228 ----S-----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV 298 (363)
Q Consensus 228 ----~-----~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~ 298 (363)
+ ..+.-.....+||++++. +.+...|....|++...-.++.++ ..|..+...|-+..... ..-.
T Consensus 280 yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr~Kk---~sr~SalkvLd~am~g~---~gt~ 352 (536)
T KOG2734|consen 280 YKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLREKK---VSRGSALKVLDHAMFGP---EGTP 352 (536)
T ss_pred hhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHHHHH---HhhhhHHHHHHHHHhCC---CchH
Confidence 1 124467888999999985 788999999999998888888752 35677888888877521 1125
Q ss_pred cchhHHhCCcHHHHHHhcc---------C-CChhHHHHHHHHHH
Q 017926 299 EPPLFRDRFFLKSVVDLTA---------S-ADLDLQEKVFLEHV 332 (363)
Q Consensus 299 ~~~~l~~~g~v~~Lv~lL~---------~-~d~~lqE~al~aL~ 332 (363)
.+..|++.+.++.+..+.- . .-.+.-|++..-|+
T Consensus 353 ~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siia 396 (536)
T KOG2734|consen 353 NCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILA 396 (536)
T ss_pred HHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHH
Confidence 6777888777776665543 1 13566677777766
No 102
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.40 E-value=0.5 Score=45.37 Aligned_cols=96 Identities=19% Similarity=0.117 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHH
Q 017926 232 EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS 311 (363)
Q Consensus 232 v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~ 311 (363)
....|+..|-.++=-||+.+..|.+..++++|+.+|...+ +..++..++.++.++.. .++.+...|.+.+.+..
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~-~~~i~~a~L~tLv~iLl-----d~p~N~r~FE~~~Gl~~ 180 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSN-PPAIQSACLDTLVCILL-----DSPENQRDFEELNGLST 180 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCC-CchHHHHHHHHHHHHHH-----cChHHHHHHHHhCCHHH
Confidence 4567888888888889999999999999999999995543 46688888888877775 46788889999999999
Q ss_pred HHHhccCC--ChhHHHHHHHHHHh
Q 017926 312 VVDLTASA--DLDLQEKVFLEHVF 333 (363)
Q Consensus 312 Lv~lL~~~--d~~lqE~al~aL~~ 333 (363)
++.++++. +.+++-|...-|.+
T Consensus 181 v~~llk~~~~~~~~r~K~~EFL~f 204 (257)
T PF08045_consen 181 VCSLLKSKSTDRELRLKCIEFLYF 204 (257)
T ss_pred HHHHHccccccHHHhHHHHHHHHH
Confidence 99999875 78888888777663
No 103
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=94.40 E-value=1.1 Score=38.42 Aligned_cols=73 Identities=16% Similarity=0.082 Sum_probs=58.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChH-HHHHHHHcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCCc
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNNL 248 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~-~Q~~~le~G~lp~Ll~LL~s~---~~~v~~kAL~ALSsLiR~~~ 248 (363)
+..|-.-|+++++.++..|..+|-.++.|... .+..+.....+..|++++... +..|+.|++.-|-+-...++
T Consensus 39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34445667889999999999999999999855 888888878888899999863 46788888888777655443
No 104
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=0.17 Score=54.61 Aligned_cols=148 Identities=11% Similarity=0.064 Sum_probs=97.7
Q ss_pred CCHHHHHHhcCC--C-----CHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 017926 174 GGLSVLVGQLNH--P-----DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (363)
Q Consensus 174 Ggl~~Li~lL~s--~-----~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~ 246 (363)
+.+|.|+++|.. + +=.+-+.|..||.-.+|. +.+.++. -++|-+=+-+++++-..+..|+.|.+|+..+
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g 394 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEG 394 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcC
Confidence 456677787754 1 123667777888877775 3333333 2334333455566667788999999999988
Q ss_pred CcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHH
Q 017926 247 NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK 326 (363)
Q Consensus 247 ~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~ 326 (363)
-.+.+..-+..++++.++.++.++ ..-+|.-++|.+..++..- .+...........+..++.-|.. .+.+-..
T Consensus 395 p~~~~Lt~iV~qalp~ii~lm~D~--sl~VkdTaAwtlgrI~d~l----~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N 467 (859)
T KOG1241|consen 395 PEPDKLTPIVIQALPSIINLMSDP--SLWVKDTAAWTLGRIADFL----PEAIINQELLQSKLSALLEGLND-EPRVASN 467 (859)
T ss_pred CchhhhhHHHhhhhHHHHHHhcCc--hhhhcchHHHHHHHHHhhc----hhhcccHhhhhHHHHHHHHHhhh-CchHHHH
Confidence 666677777789999999999965 5667889999999999642 12222333334555555555543 5666666
Q ss_pred HHHHHH
Q 017926 327 VFLEHV 332 (363)
Q Consensus 327 al~aL~ 332 (363)
+.+|+.
T Consensus 468 ~CWAf~ 473 (859)
T KOG1241|consen 468 VCWAFI 473 (859)
T ss_pred HHHHHH
Confidence 666655
No 105
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.35 E-value=0.94 Score=48.91 Aligned_cols=130 Identities=19% Similarity=0.196 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL 225 (363)
-++..+.-+-.+-.-.++.|.-++|+. |-+..+++-..+++..||.+.+.+|+.+..+|...-+.+.+ +....|+.=+
T Consensus 58 i~dRIl~fla~fv~sl~q~d~e~DlV~-~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl 135 (892)
T KOG2025|consen 58 IPDRILSFLARFVESLPQLDKEEDLVA-GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRL 135 (892)
T ss_pred cHHHHHHHHHHHHHhhhccCchhhHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHH
Confidence 334444444555555667888888664 67788888889999999999999999999877665555443 5566666666
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 283 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~l 283 (363)
.+..+.||..|+.|||-+= +.+..- +...+..+..+++.+. +..+|+-|+.-
T Consensus 136 ~Drep~VRiqAv~aLsrlQ-~d~~de----e~~v~n~l~~liqnDp-S~EVRRaaLsn 187 (892)
T KOG2025|consen 136 KDREPNVRIQAVLALSRLQ-GDPKDE----ECPVVNLLKDLIQNDP-SDEVRRAALSN 187 (892)
T ss_pred hccCchHHHHHHHHHHHHh-cCCCCC----cccHHHHHHHHHhcCC-cHHHHHHHHHh
Confidence 6667789999999999883 222211 2346678888888774 45688766543
No 106
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.24 E-value=2.1 Score=46.77 Aligned_cols=198 Identities=20% Similarity=0.239 Sum_probs=125.0
Q ss_pred HhHHHHHHH--HHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHH
Q 017926 112 KRQMEIKEL--MEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTD 189 (363)
Q Consensus 112 ~r~~~Lkea--l~~l~~~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~ 189 (363)
+|++-+-++ +.++|-|.-...| ++++.+.++.. +|.|+.=|-...-|=|..| +.-+ ..-.|.+-|+|++.-
T Consensus 50 ~r~rniaKLlYi~MLGypahFGqi-eclKLias~~f-~dKRiGYLaamLlLdE~qd----vllL-ltNslknDL~s~nq~ 122 (866)
T KOG1062|consen 50 KRHRNIAKLLYIHMLGYPAHFGQI-ECLKLIASDNF-LDKRIGYLAAMLLLDERQD----LLLL-LTNSLKNDLNSSNQY 122 (866)
T ss_pred HHHHHHHHHHHHHHhCCCccchhh-HHHHHhcCCCc-hHHHHHHHHHHHHhccchH----HHHH-HHHHHHhhccCCCee
Confidence 344444433 3445556555554 56666665443 3556655555555444433 2111 111233456788999
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcC
Q 017926 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 269 (363)
Q Consensus 190 Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s 269 (363)
+...|.-+||+++. |+... ...|...+++++.++-+|.||+.|.--++|.-|...+.|+. .-..+|.+
T Consensus 123 vVglAL~alg~i~s--~Emar-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~-----~~~~lL~e 190 (866)
T KOG1062|consen 123 VVGLALCALGNICS--PEMAR-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVI-----AFRKLLCE 190 (866)
T ss_pred ehHHHHHHhhccCC--HHHhH-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhH-----HHHHHHhh
Confidence 99999999999984 54433 45788999999999999999999999999998887776653 33444544
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhcc---------------CCChhHHHHHHHHHHhh
Q 017926 270 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---------------SADLDLQEKVFLEHVFC 334 (363)
Q Consensus 270 ~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~---------------~~d~~lqE~al~aL~~~ 334 (363)
. +..+-.-++.++..||. .+++....+.+ +++.+|..|+ ..|+-+|-+.++.|..+
T Consensus 191 k--~hGVL~~~l~l~~e~c~-----~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriL 261 (866)
T KOG1062|consen 191 K--HHGVLIAGLHLITELCK-----ISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRIL 261 (866)
T ss_pred c--CCceeeeHHHHHHHHHh-----cCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHh
Confidence 4 23455566777777775 34555566655 5555555542 23678888888887755
Q ss_pred ccc
Q 017926 335 GLV 337 (363)
Q Consensus 335 ~~~ 337 (363)
|..
T Consensus 262 Gq~ 264 (866)
T KOG1062|consen 262 GQN 264 (866)
T ss_pred cCC
Confidence 553
No 107
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=94.21 E-value=2.9 Score=40.72 Aligned_cols=103 Identities=18% Similarity=0.269 Sum_probs=62.8
Q ss_pred CHHHHHHhcC-CCCHHHHHHHHHHHHHHhccC-----------------------h--HHHHHHHH-------cCcHHHH
Q 017926 175 GLSVLVGQLN-HPDTDIRKISAWILGKASQNN-----------------------P--LVQKQVLE-------LGALSKL 221 (363)
Q Consensus 175 gl~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNN-----------------------p--~~Q~~~le-------~G~lp~L 221 (363)
.+++++.+|. +.+..+|..|+++|+.+-.-+ + ..+....+ .-.++.|
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l 185 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLL 185 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHH
Confidence 5777888877 578888888888888766432 1 01111111 1245666
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 222 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 222 l~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
..++......++..|..+|+.+..++ ......+...++++ +..+|.+++..+..+-
T Consensus 186 ~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~--~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 186 IELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE--SLEVRKAALLALGEIG 241 (335)
T ss_pred HHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC--CHHHHHHHHHHhcccC
Confidence 66666666666777777777765443 23445566666665 4556777777666553
No 108
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.19 E-value=0.65 Score=49.50 Aligned_cols=143 Identities=17% Similarity=0.143 Sum_probs=87.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccChHHH--HHHHHcCcHHHHHHhhcCCCHHHH---HHHHHHHHHHhcCCcccHH
Q 017926 178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQ--KQVLELGALSKLMKMVKSSFVEEA---VKALYTVSSLIRNNLAGQE 252 (363)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q--~~~le~G~lp~Ll~LL~s~~~~v~---~kAL~ALSsLiR~~~~a~~ 252 (363)
.++.+|++..+.+|.+|+...|.++.-=..|- +.+.+.| -.|...|..+.+++- .+|+++|-+..|-. ..|.
T Consensus 608 tiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~-~mqp 684 (975)
T COG5181 608 TILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFR-SMQP 684 (975)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccc-ccCC
Confidence 34578899999999999999998875111111 1112223 235566666667664 46666665554422 1110
Q ss_pred HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 253 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 253 ~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
- -.|.++.|..+|++. ..|+......++.-+|.. .++-...=.=...+--|+++|.+.+.+++..|-.+++
T Consensus 685 P--i~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~~-----~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG 755 (975)
T COG5181 685 P--ISGILPSLTPILRNK--HQKVVANTIALVGTICMN-----SPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFG 755 (975)
T ss_pred c--hhhccccccHhhhhh--hHHHhhhHHHHHHHHHhc-----CcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Confidence 0 135678889999987 688999999999999863 2221111011235556777777777777776665554
No 109
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=2 Score=46.89 Aligned_cols=192 Identities=14% Similarity=0.093 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHcccCCCchhhHHhcCCH---------------HHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHH
Q 017926 148 EDSQRALQELLILVEPIDNANDLSKLGGL---------------SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 212 (363)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnAn~l~~lGgl---------------~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~ 212 (363)
.-++.|.+.|..++-+-||=-..+.++++ ..++.||+++|+.||..|...+-.++..+. +.
T Consensus 309 ~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N-v~--- 384 (866)
T KOG1062|consen 309 GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN-VR--- 384 (866)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc-HH---
Confidence 33455566666655555543233333322 357899999999999999999998885321 11
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHH-------h-cC------cHHHHHHhhcCC--------
Q 017926 213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY-------V-EA------GDLMLQDILGNS-------- 270 (363)
Q Consensus 213 le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~-------~-~g------G~~~L~~lL~s~-------- 270 (363)
..+..|+..|.+.++.++....+-|.-++..|.|...-|+ . +| .+.-++.++.+.
T Consensus 385 ---~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~ 461 (866)
T KOG1062|consen 385 ---VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYA 461 (866)
T ss_pred ---HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHH
Confidence 2467788888888888888888888888877766422221 1 22 334444444332
Q ss_pred ---------------CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC--ChhHHHHHHHHHHh
Q 017926 271 ---------------SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKVFLEHVF 333 (363)
Q Consensus 271 ---------------~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~lqE~al~aL~~ 333 (363)
-+.+.+..-+.|.|.--..--+...+.+....+-+..++..|-+++.+. +..++--++.||.-
T Consensus 462 ~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~K 541 (866)
T KOG1062|consen 462 VLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLK 541 (866)
T ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 1123344445555542221001111223333444566777888887754 67788888888887
Q ss_pred hcccccCchhhhh
Q 017926 334 CGLVFCTCPCIVR 346 (363)
Q Consensus 334 ~~~~~~~~~~~~r 346 (363)
+++..+.|-...|
T Consensus 542 LSsr~~s~~~ri~ 554 (866)
T KOG1062|consen 542 LSSRFHSSSERIK 554 (866)
T ss_pred HHhhccccHHHHH
Confidence 7777776655544
No 110
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.04 E-value=2 Score=45.34 Aligned_cols=224 Identities=15% Similarity=0.085 Sum_probs=136.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCC----HHHHHHHHHHHHHHh
Q 017926 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPD----TDIRKISAWILGKAS 202 (363)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~----~~Ir~~Aa~~Lgt~a 202 (363)
.++....+++++++.++ +...+..|+..|..+--+.-.|..|+++.|+..|..++.+.. .++...+..+...+.
T Consensus 79 ~sp~~~a~~i~e~l~~~--~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elm 156 (713)
T KOG2999|consen 79 ASPSHYAKRIMEILTEG--NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELM 156 (713)
T ss_pred cCchHHHHHHHHHHhCC--CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 35567788999999876 346677799999999999999999999999999999997653 466666666555544
Q ss_pred ccChHHHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 017926 203 QNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 280 (363)
Q Consensus 203 qNNp~~Q~~~le~G~lp~Ll~LL~s~--~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA 280 (363)
.---.+-+. +...++-....+.+-. +..+-..|+.-+-+++-+.+.-.+.+.+.--++.|+..++.. +.+++..|
T Consensus 157 ehgvvsW~~-~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~--n~~i~~~a 233 (713)
T KOG2999|consen 157 EHGVVSWES-VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS--NQRIQTCA 233 (713)
T ss_pred hhceeeeee-cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc--chHHHHHH
Confidence 221101110 1112233333444221 223445677777788877766666677777888888888875 67899999
Q ss_pred HHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccC----CChhHHHHHHHHHHhhc----ccccCchhhhhHHHHHH
Q 017926 281 VSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS----ADLDLQEKVFLEHVFCG----LVFCTCPCIVRGAVIVA 352 (363)
Q Consensus 281 ~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~----~d~~lqE~al~aL~~~~----~~~~~~~~~~r~~~l~~ 352 (363)
..++..|..- ..++.+..+.+.-....+...+.+ ..-.+|-.++.+|.+-. .....++....++-+++
T Consensus 234 ial~nal~~~----a~~~~R~~~~~~l~~~~~R~ai~~~~~~~~~~~~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~ 309 (713)
T KOG2999|consen 234 IALLNALFRK----APDDKRFEMAKSLEQKQFRNAIHSNVIRTERPIQLYVLQVLTLGLLEVRMRTKMDPQDQVQRELIS 309 (713)
T ss_pred HHHHHHHHhh----CChHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhhhHHhhhcccchhhHHHHHHHH
Confidence 9999999862 344444444433333333322221 12333545555544211 12333454555566666
Q ss_pred hhhhccc
Q 017926 353 EYIYINF 359 (363)
Q Consensus 353 ~~~~~~~ 359 (363)
+++-+-|
T Consensus 310 ~lr~iaf 316 (713)
T KOG2999|consen 310 ELRRIAF 316 (713)
T ss_pred HHHhcCc
Confidence 6665544
No 111
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=1.6 Score=48.69 Aligned_cols=119 Identities=15% Similarity=0.169 Sum_probs=76.8
Q ss_pred HHHHHHHhh------cCCCCHHHHHHHHHHHHHcccCC----CchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 017926 133 IQIAIDDLN------NSTLSLEDSQRALQELLILVEPI----DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKAS 202 (363)
Q Consensus 133 mk~al~~L~------~~~~s~e~k~~AL~~L~~Lve~i----DnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~a 202 (363)
|.=++.++. .+..+.-.|..||..+..+++-+ -.++.+..+ ..+.+...++++.--+|++|||+++..+
T Consensus 412 l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f-lv~hVfP~f~s~~g~Lrarac~vl~~~~ 490 (1010)
T KOG1991|consen 412 LSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF-LVNHVFPEFQSPYGYLRARACWVLSQFS 490 (1010)
T ss_pred HHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH-HHHHhhHhhcCchhHHHHHHHHHHHHHH
Confidence 444555555 22233455666766666655432 234444444 5667778889999999999999999999
Q ss_pred ccChHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCcccHHHH
Q 017926 203 QNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMF 254 (363)
Q Consensus 203 qNNp~~Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~~~a~~~f 254 (363)
.-+=+.+..+. .++..-.+.|.+ ..-+|++.|..||.+++++++.+-..+
T Consensus 491 ~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~ 541 (1010)
T KOG1991|consen 491 SIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKV 541 (1010)
T ss_pred hccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhH
Confidence 43222222222 345666667774 445899999999999999977653333
No 112
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.88 E-value=1.8 Score=48.27 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhc
Q 017926 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG 268 (363)
Q Consensus 189 ~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~ 268 (363)
.++..++-+++...++--..--. ...+.+..++--+.+....+|.||+++||.+.-..+. ..|. +-++.|..-|.
T Consensus 148 ai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~--~ly~--~li~~Ll~~L~ 222 (1233)
T KOG1824|consen 148 AIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR--DLYV--ELIEHLLKGLS 222 (1233)
T ss_pred hhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH--HHHH--HHHHHHHhccC
Confidence 36666666666666542111111 2234445555555665567899999999998765332 2222 33455555555
Q ss_pred CCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhc---cCCChhHHHHHHHHHH
Q 017926 269 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT---ASADLDLQEKVFLEHV 332 (363)
Q Consensus 269 s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL---~~~d~~lqE~al~aL~ 332 (363)
.+..+..+| --.-+|+.++.+. ...+-. .-...++.+.+.. ..+|.+++|..+.++.
T Consensus 223 ~~~q~~~~r-t~Iq~l~~i~r~a----g~r~~~--h~~~ivp~v~~y~~~~e~~dDELrE~~lQale 282 (1233)
T KOG1824|consen 223 NRTQMSATR-TYIQCLAAICRQA----GHRFGS--HLDKIVPLVADYCNKIEEDDDELREYCLQALE 282 (1233)
T ss_pred CCCchHHHH-HHHHHHHHHHHHh----cchhhc--ccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 443233333 3456677777642 111111 1246778888877 6679999999999988
No 113
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=93.77 E-value=0.99 Score=47.74 Aligned_cols=169 Identities=11% Similarity=0.087 Sum_probs=110.7
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHH
Q 017926 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (363)
Q Consensus 174 Ggl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~ 253 (363)
.-+..++.-+..+.+.+|...+.|+..+.-.-..-+ ..-.++.+.+++++.+...+.++.|++..+++|+. ...
T Consensus 96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~ 169 (569)
T KOG1242|consen 96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IES 169 (569)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhh
Confidence 345667777888999999999999988875322111 12467889999998888889999999999999854 577
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHH-HHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhcc---CCChhHHHHHHH
Q 017926 254 FYVEAGDLMLQDILGNSSFEIRLHRK-AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---SADLDLQEKVFL 329 (363)
Q Consensus 254 f~~~gG~~~L~~lL~s~~~~~klr~k-A~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~---~~d~~lqE~al~ 329 (363)
+.+.+-+..|...+++.+ ...++. +.+....++.. ..+. ++..+++.+..+|. .....+|+.+..
T Consensus 170 ~~~~~~l~~l~~ai~dk~--~~~~re~~~~a~~~~~~~----Lg~~-----~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~ 238 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKK--SALNREAALLAFEAAQGN----LGPP-----FEPYIVPILPSILTNFGDKINKVREAAVE 238 (569)
T ss_pred hhhhhHHHHHHHHhcccc--hhhcHHHHHHHHHHHHHh----cCCC-----CCchHHhhHHHHHHHhhccchhhhHHHHH
Confidence 888888899999988874 234454 44444444432 2222 34455555555554 446788877766
Q ss_pred HHHhhcccccCchhhhhHHHHHHhhhhcccccC
Q 017926 330 EHVFCGLVFCTCPCIVRGAVIVAEYIYINFSAF 362 (363)
Q Consensus 330 aL~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~ 362 (363)
|.. +.+..+.+.... .++++-...+.+..|
T Consensus 239 a~k--ai~~~~~~~aVK-~llpsll~~l~~~kW 268 (569)
T KOG1242|consen 239 AAK--AIMRCLSAYAVK-LLLPSLLGSLLEAKW 268 (569)
T ss_pred HHH--HHHHhcCcchhh-HhhhhhHHHHHHHhh
Confidence 654 334555555544 455555444444444
No 114
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=1.7 Score=43.31 Aligned_cols=200 Identities=15% Similarity=0.158 Sum_probs=130.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHcccCCC-chh----hHHhcCCHHHHHHhcCCCCHH
Q 017926 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTL--SLEDSQRALQELLILVEPID-NAN----DLSKLGGLSVLVGQLNHPDTD 189 (363)
Q Consensus 117 Lkeal~~l~~~~d~~lmk~al~~L~~~~~--s~e~k~~AL~~L~~Lve~iD-nAn----~l~~lGgl~~Li~lL~s~~~~ 189 (363)
|+.+++.+ ..+-+..+.+-+|.-.-. +.-.|.-++..+..++|+-| |+. ..++.|.++.++.|+..++.+
T Consensus 67 LERLfkak---egahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedde 143 (524)
T KOG4413|consen 67 LERLFKAK---EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDE 143 (524)
T ss_pred HHHHHhhc---cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHH
Confidence 34455433 234455555555543322 23467888999999999887 332 334667888889999999999
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHcCcHHHH--HHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhh
Q 017926 190 IRKISAWILGKASQNNPLVQKQVLELGALSKL--MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 267 (363)
Q Consensus 190 Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~L--l~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL 267 (363)
+...|...|..++- -|..-+.+.+...+..+ ..+....++-+|++.+.-|--+-.-.|......-+.|-+..|..=|
T Consensus 144 VAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl 222 (524)
T KOG4413|consen 144 VAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL 222 (524)
T ss_pred HHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence 99999999999885 56666666666555433 2333333333344443333333222455556666777788888778
Q ss_pred cCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHH
Q 017926 268 GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKV 327 (363)
Q Consensus 268 ~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~a 327 (363)
+... |.-++....-+++.|+. ..+.++.+-+.|++..+.+.+...|.+--|+.
T Consensus 223 kGte-DtLVianciElvteLae------teHgreflaQeglIdlicnIIsGadsdPfekf 275 (524)
T KOG4413|consen 223 KGTE-DTLVIANCIELVTELAE------TEHGREFLAQEGLIDLICNIISGADSDPFEKF 275 (524)
T ss_pred cCCc-ceeehhhHHHHHHHHHH------HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHH
Confidence 7743 56678888888999885 34567788889999999999987655544443
No 115
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=93.71 E-value=0.79 Score=39.92 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=58.2
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcC
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRN 246 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s------~~~~v~~kAL~ALSsLiR~ 246 (363)
++..|..-|++.++.++..|..+|-++++|. +.++..|...+.+..|++++.. .+..|+.|.+.-|=.-...
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4556667788999999999999999999997 6688889999999999999963 3467888877766554433
No 116
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.70 E-value=0.35 Score=43.01 Aligned_cols=109 Identities=13% Similarity=0.065 Sum_probs=75.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc-cHHHHHhcCcHHHHHHhhcCC-------CccHHHHHHHHHHHHHHh
Q 017926 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNS-------SFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~-a~~~f~~~gG~~~L~~lL~s~-------~~~~klr~kA~~lL~~L~ 288 (363)
-...+++.+.+.+... +.+..|.-.+|+.+. ..+.|++.||+..|..+|..- ..+..+...++..+..|+
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3445667776654322 888889988887654 578999999999999987431 124457778888888888
Q ss_pred hhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.. .......+...+++..|+..|.++++.++..++..|.
T Consensus 145 n~-----~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~ 183 (187)
T PF06371_consen 145 NT-----KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILA 183 (187)
T ss_dssp SS-----HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHH
T ss_pred cc-----HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 42 2222334446899999999999999999999988766
No 117
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.68 E-value=1.9 Score=41.47 Aligned_cols=169 Identities=15% Similarity=0.099 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHhhcCC---CCH---HHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCC-----CHHHHHHHHHH
Q 017926 129 DAQLIQIAIDDLNNST---LSL---EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP-----DTDIRKISAWI 197 (363)
Q Consensus 129 d~~lmk~al~~L~~~~---~s~---e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~-----~~~Ir~~Aa~~ 197 (363)
-+.+.+|.+.+...-+ .+. ..-..||.-|.-++...|....|.+..-.-.|..+|+.. -+.+|-.+..+
T Consensus 40 i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGV 119 (262)
T PF04078_consen 40 IAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGV 119 (262)
T ss_dssp HHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHH
Confidence 4567788887764322 233 334567777777778889999999988777777888643 37799999999
Q ss_pred HHHHhc-cChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc------cHHHHHhc-CcHHHHHHhhcC
Q 017926 198 LGKASQ-NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA------GQEMFYVE-AGDLMLQDILGN 269 (363)
Q Consensus 198 Lgt~aq-NNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~------a~~~f~~~-gG~~~L~~lL~s 269 (363)
||.+++ +.+++...+++...+|..++.+..++.--+.-|.+-+--|+-+... ..+.|... ..+..++.-+..
T Consensus 120 IgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~ 199 (262)
T PF04078_consen 120 IGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVK 199 (262)
T ss_dssp HHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHcc
Confidence 999998 5678888889999999999999998776688888888887765322 13455543 344444444433
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHH
Q 017926 270 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (363)
Q Consensus 270 ~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~ 304 (363)
. .+.++-+.+......|+. ++..++.+.
T Consensus 200 ~-pS~RLLKhIIrCYlRLsd------nprar~aL~ 227 (262)
T PF04078_consen 200 Q-PSPRLLKHIIRCYLRLSD------NPRAREALR 227 (262)
T ss_dssp S---HHHHHHHHHHHHHHTT------STTHHHHHH
T ss_pred C-CChhHHHHHHHHHHHHcc------CHHHHHHHH
Confidence 2 267887888887777773 555555544
No 118
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.49 E-value=2.9 Score=47.48 Aligned_cols=204 Identities=15% Similarity=0.098 Sum_probs=120.8
Q ss_pred HhHHHHHHHHHHcCCCCHH----HHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC
Q 017926 112 KRQMEIKELMEKLKTPSDA----QLIQIAIDDLNNST--LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH 185 (363)
Q Consensus 112 ~r~~~Lkeal~~l~~~~d~----~lmk~al~~L~~~~--~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s 185 (363)
|+++.|++++.. |+-. +.+...+..+.++. .+.-.+...+..|..+++-.++-..-.-...++-+|=+++.
T Consensus 673 K~yrlL~~l~~~---~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke 749 (1176)
T KOG1248|consen 673 KAYRLLEELSSS---PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKE 749 (1176)
T ss_pred HHHHHHHHHhcC---CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccc
Confidence 577788888864 3322 22222333332221 22344556666666666666522211122345555555577
Q ss_pred CCHHHHHHHHHHHHHHh--cc------ChHHHHHHHHcCcHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCCcccHHH
Q 017926 186 PDTDIRKISAWILGKAS--QN------NPLVQKQVLELGALSKLMKMVKS----SFVEEAVKALYTVSSLIRNNLAGQEM 253 (363)
Q Consensus 186 ~~~~Ir~~Aa~~Lgt~a--qN------Np~~Q~~~le~G~lp~Ll~LL~s----~~~~v~~kAL~ALSsLiR~~~~a~~~ 253 (363)
.+..-|..|..||-.++ |+ +| +.. .|...+.++.. +++-++..-+.|+.+++.++....+.
T Consensus 750 ~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~-----~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~ 822 (1176)
T KOG1248|consen 750 VNVKARRNAFALLVFIGAIQSSLDDGNEP--ASA-----ILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDD 822 (1176)
T ss_pred ccHHHHhhHHHHHHHHHHHHhhhcccccc--hHH-----HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccH
Confidence 88999999999888877 22 22 121 34444444443 33444444489999998876665544
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 254 f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
-.-.+-++.+..+|.+. ...++.-|+.++.-++. ..|+.+-.-...-+++.+..+++.....++-++..-+.
T Consensus 823 ~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~-----~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 823 ETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVY-----KFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred HHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHH-----cCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44456677788888886 45688899999998886 34443333333447788888777667777776655443
No 119
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.43 E-value=2.7 Score=40.47 Aligned_cols=211 Identities=14% Similarity=0.062 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHHcccCC-CchhhHHh-cCCHHHHHH-------hcCCCC--HHHHHHHHHHH--HHHhccChHHHHHH
Q 017926 146 SLEDSQRALQELLILVEPI-DNANDLSK-LGGLSVLVG-------QLNHPD--TDIRKISAWIL--GKASQNNPLVQKQV 212 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~i-DnAn~l~~-lGgl~~Li~-------lL~s~~--~~Ir~~Aa~~L--gt~aqNNp~~Q~~~ 212 (363)
+++.|+.|+.+|..--|.. |.|--+-. .|-+..|++ .|..++ +..--+.|.+| =.++..+|+.+..|
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 4688999999999877765 44544443 455555543 233221 22222333333 22333599999999
Q ss_pred HHcCcHHHHHHhhcCCCH-----HHHHHHHHHHHHHhcCCc-ccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 017926 213 LELGALSKLMKMVKSSFV-----EEAVKALYTVSSLIRNNL-AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (363)
Q Consensus 213 le~G~lp~Ll~LL~s~~~-----~v~~kAL~ALSsLiR~~~-~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~ 286 (363)
++....--|...|+..+. .+|..++.-|+++++.+. +...-+....-++...+.+... +...|.-|.|.+.-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G--selSKtvAtfIlqK 165 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG--SELSKTVATFILQK 165 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS---HHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc--cHHHHHHHHHHHHH
Confidence 999876666677765432 358899999999999744 4444555667889999999876 45678899999998
Q ss_pred Hhhhh--hhcCCCCcchhHH-hCCcHHHHHHhc-cCCChhHHHHHHHHHHhhcccccCchhhhhHHHHHHhhhhccccc
Q 017926 287 LAKCQ--LENMHKVEPPLFR-DRFFLKSVVDLT-ASADLDLQEKVFLEHVFCGLVFCTCPCIVRGAVIVAEYIYINFSA 361 (363)
Q Consensus 287 L~~~~--~~~~~~~~~~~l~-~~g~v~~Lv~lL-~~~d~~lqE~al~aL~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~ 361 (363)
+.... ++..- ...++|. =..++..++..+ ..+++.+..++.+|-.-++- .+-..+..| ..+|.+..-.+|..
T Consensus 166 IL~dd~GL~yiC-~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~-~~LP~~Lrd~~f~~ 241 (262)
T PF04078_consen 166 ILLDDVGLNYIC-QTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALR-QCLPDQLRDGTFSN 241 (262)
T ss_dssp HHHSHHHHHHHT-SSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHH-HHS-GGGTSSTTTT
T ss_pred HHcchhHHHHHh-cCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHH-HhCcHHHhcHHHHH
Confidence 87532 11000 1222322 123445555444 34588888999888762221 122333444 45666665555543
No 120
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.39 E-value=0.36 Score=37.48 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCcccHHHHHhc
Q 017926 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (363)
Q Consensus 191 r~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~-~~v~~kAL~ALSsLiR~~~~a~~~f~~~ 257 (363)
++.|.|++|+++. .|.-...+.+.+.++.++++..+.+ -.+|--|.|+|+=+.+. ..+.+.+.+.
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDEL 69 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHc
Confidence 4689999999998 4556666667899999999999765 57899999999988764 4555544443
No 121
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.16 E-value=2.5 Score=45.61 Aligned_cols=149 Identities=13% Similarity=0.069 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHh------c-CCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 017926 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK------L-GGLSVLVGQLNHPDTDIRKISAWILGKAS 202 (363)
Q Consensus 130 ~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~------l-Ggl~~Li~lL~s~~~~Ir~~Aa~~Lgt~a 202 (363)
++++.+..+.|.+++.+ ..+.|+.+|...+|+. |.-+.. + =.+|.++++.+|+++.||..|..|+-...
T Consensus 127 pelLp~L~~~L~s~d~n--~~EgA~~AL~KIcEDs--a~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYN--TCEGAFGALQKICEDS--AQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI 202 (885)
T ss_pred hhHHHHHHHHhcCCccc--ccchhHHHHHHHHhhh--HHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee
Confidence 46677777777766521 2345556666665543 222211 1 14778889999999999999999998877
Q ss_pred ccChHHHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHh-c-CcHHHHHHhhcCCCccHHHHHH
Q 017926 203 QNNPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-E-AGDLMLQDILGNSSFEIRLHRK 279 (363)
Q Consensus 203 qNNp~~Q~~~le~-G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~-~-gG~~~L~~lL~s~~~~~klr~k 279 (363)
-.++ |.....- ..+..|..+..+++++||.....|+.-++.-.++ ...- . |.++.++...++. +..+...
T Consensus 203 ~~~~--qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d---kl~phl~~IveyML~~tqd~--dE~VALE 275 (885)
T KOG2023|consen 203 IIQT--QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD---KLVPHLDNIVEYMLQRTQDV--DENVALE 275 (885)
T ss_pred ecCc--HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH---hcccchHHHHHHHHHHccCc--chhHHHH
Confidence 6554 3333322 5788888898888899999999999998865443 3332 2 4567777766665 5668899
Q ss_pred HHHHHHHHhh
Q 017926 280 AVSLVGDLAK 289 (363)
Q Consensus 280 A~~lL~~L~~ 289 (363)
|+-+...++.
T Consensus 276 ACEFwla~ae 285 (885)
T KOG2023|consen 276 ACEFWLALAE 285 (885)
T ss_pred HHHHHHHHhc
Confidence 9999999985
No 122
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.98 E-value=1.8 Score=37.66 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=59.6
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCC
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNN 247 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~ 247 (363)
++..|..-|++.++.++..|..+|-++++|. +..+..+...+.+..|++++.. .+..|+.|++..|-+-...+
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 4555666778899999999999999999995 6688888899999999999985 44678888888777655443
No 123
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=92.91 E-value=0.3 Score=50.47 Aligned_cols=104 Identities=15% Similarity=0.062 Sum_probs=73.4
Q ss_pred ChHHHHHHHHcCcHHHHHHhh---------c-CCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCC----
Q 017926 205 NPLVQKQVLELGALSKLMKMV---------K-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS---- 270 (363)
Q Consensus 205 Np~~Q~~~le~G~lp~Ll~LL---------~-s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~---- 270 (363)
.|...+.++...++..|+++. . ..+..+...|+-+|+|++-+++.+++.|.+.|+...+...|+..
T Consensus 11 d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~ 90 (446)
T PF10165_consen 11 DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSS 90 (446)
T ss_pred CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccC
Confidence 344555566666677777776 2 23467889999999999999999999999999999999998765
Q ss_pred --CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHH-hCCcHHHHHHhc
Q 017926 271 --SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR-DRFFLKSVVDLT 316 (363)
Q Consensus 271 --~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~-~~g~v~~Lv~lL 316 (363)
....-+-.|.+|+++++. +..+..++ +.+++..+++.|
T Consensus 91 ~~~d~~Fl~~RLLFLlTa~~--------~~~~~~L~~e~~~~~~l~~~L 131 (446)
T PF10165_consen 91 QPSDVEFLDSRLLFLLTALR--------PDDRKKLIEEHHGVELLTEAL 131 (446)
T ss_pred CChhHHHHHHHHHHHHhcCC--------hhHHHHHHHHhhhHHHHHHHH
Confidence 223344556666666554 34454544 457777777765
No 124
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.85 E-value=0.37 Score=42.58 Aligned_cols=145 Identities=12% Similarity=0.151 Sum_probs=91.8
Q ss_pred CHHHHHHhcC--CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHH
Q 017926 175 GLSVLVGQLN--HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (363)
Q Consensus 175 gl~~Li~lL~--s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~ 252 (363)
.+..++..|. ...+++|..|.-++...- +..++.+.+. .-..+-.++...+..-...++.+++.+--.-|....
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~-~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK-ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH-HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 3445666554 478899999999999884 3344443322 222233334332223577899999999888776655
Q ss_pred HHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-Chh-HHHHHHH
Q 017926 253 MFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLD-LQEKVFL 329 (363)
Q Consensus 253 ~f~~-~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~-lqE~al~ 329 (363)
.++. .|-.+.+...+.....+..++..++-+|..=|. ++..+..+ ...+++-|-+.++.+ |.. ++..|+-
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~------d~~~r~~I-~~~~~~~L~~~~~~~~~~~~ir~~A~v 152 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI------DKSCRTFI-SKNYVSWLKELYKNSKDDSEIRVLAAV 152 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT------SHHHHHCC-HHHCHHHHHHHTTTCC-HH-CHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc------cHHHHHHH-HHHHHHHHHHHHccccchHHHHHHHHH
Confidence 5554 555788888888333477888889989887773 44444444 445669999999655 444 5555544
Q ss_pred H
Q 017926 330 E 330 (363)
Q Consensus 330 a 330 (363)
+
T Consensus 153 ~ 153 (157)
T PF11701_consen 153 G 153 (157)
T ss_dssp H
T ss_pred H
Confidence 4
No 125
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.73 E-value=0.71 Score=49.98 Aligned_cols=137 Identities=17% Similarity=0.140 Sum_probs=103.6
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHH
Q 017926 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (363)
Q Consensus 174 Ggl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~ 253 (363)
+.++.++.+....+.+++...---+.+-++.+|.-+. ++++.+++=..++++.+|..|+...+++ |- +.
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~~d~np~iR~lAlrtm~~l-~v-~~---- 117 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDCEDPNPLIRALALRTMGCL-RV-DK---- 117 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccCCCCCHHHHHHHhhceeeE-ee-hH----
Confidence 3577888888888899999988889999988886443 5677777777777888898888888776 21 11
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 254 f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+. ..-...|..+++++ +..+|+.++..+..+-. ...+.+.+.|++..|-+++...++.+...|+.+|.
T Consensus 118 i~-ey~~~Pl~~~l~d~--~~yvRktaa~~vakl~~--------~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~ 185 (734)
T KOG1061|consen 118 IT-EYLCDPLLKCLKDD--DPYVRKTAAVCVAKLFD--------IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALS 185 (734)
T ss_pred HH-HHHHHHHHHhccCC--ChhHHHHHHHHHHHhhc--------CChhhccccchhHHHHHHhcCCCchHHHHHHHHHH
Confidence 11 12356888888887 56688888888777753 33556678899999999999778888888888876
No 126
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=92.45 E-value=4.9 Score=44.95 Aligned_cols=204 Identities=16% Similarity=0.077 Sum_probs=114.4
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHH-HHHHhcCCCCHHHHHHHHHHHHHHhccChHHH
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLS-VLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 209 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~-~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q 209 (363)
.+..+.+..+.++..+...|+-|+-.|.++=...| .....+++ .+++.+++++.+|+..|+.+||+++-.|-
T Consensus 817 s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~----~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl--- 889 (1233)
T KOG1824|consen 817 SLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKD----LSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNL--- 889 (1233)
T ss_pred hHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCC----CCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCch---
Confidence 34556666666677777778888888887544433 33333333 66799999999999999999999998542
Q ss_pred HHHHHcCcHHHHHHhhcCCCH------------------H-H--HHHHHHHH-HHHhcCCcccHHHHH-hc-C-------
Q 017926 210 KQVLELGALSKLMKMVKSSFV------------------E-E--AVKALYTV-SSLIRNNLAGQEMFY-VE-A------- 258 (363)
Q Consensus 210 ~~~le~G~lp~Ll~LL~s~~~------------------~-v--~~kAL~AL-SsLiR~~~~a~~~f~-~~-g------- 258 (363)
...+|-++....+... . . -+.-+|++ ..=|.+.+++.+-++ ++ |
T Consensus 890 -----~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep 964 (1233)
T KOG1824|consen 890 -----PKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP 964 (1233)
T ss_pred -----HhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh
Confidence 1234444444433221 0 0 01122222 222233333322222 11 1
Q ss_pred --cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhcc
Q 017926 259 --GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCGL 336 (363)
Q Consensus 259 --G~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~~ 336 (363)
-++.|...+.++. ...|.-++.++..... .++.-.+.+.. ..+.....+++.+|..++..|+.++...+=
T Consensus 965 esLlpkL~~~~~S~a--~~~rs~vvsavKfsis-----d~p~~id~~lk-~~ig~fl~~~~dpDl~VrrvaLvv~nSaah 1036 (1233)
T KOG1824|consen 965 ESLLPKLKLLLRSEA--SNTRSSVVSAVKFSIS-----DQPQPIDPLLK-QQIGDFLKLLRDPDLEVRRVALVVLNSAAH 1036 (1233)
T ss_pred HHHHHHHHHHhcCCC--cchhhhhhheeeeeec-----CCCCccCHHHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHc
Confidence 1234444455542 3345556666665553 23333333332 345667788899999999999999884444
Q ss_pred cccCchhhhhHHHHHHhh
Q 017926 337 VFCTCPCIVRGAVIVAEY 354 (363)
Q Consensus 337 ~~~~~~~~~r~~~l~~~~ 354 (363)
.-+.|....-..++|.-|
T Consensus 1037 NKpslIrDllpeLLp~Ly 1054 (1233)
T KOG1824|consen 1037 NKPSLIRDLLPELLPLLY 1054 (1233)
T ss_pred cCHhHHHHHHHHHHHHHH
Confidence 555555544445555443
No 127
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.35 E-value=2.7 Score=44.57 Aligned_cols=99 Identities=17% Similarity=0.226 Sum_probs=57.3
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhc
Q 017926 178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (363)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~ 257 (363)
.+++|+..++..||.+|..-|..+|.+||+.-..+ ...|++||.+++.....-+=.+|.++++.++.+.-
T Consensus 63 a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL----- 132 (556)
T PF05918_consen 63 AQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTL----- 132 (556)
T ss_dssp HHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHH-----
T ss_pred HHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHH-----
Confidence 34444445568999999999999999987655543 56899999998876666667778888887665321
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 258 gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
+| ++.+++.+++.+..+|.++..+|..=.
T Consensus 133 ~~--lf~~i~~~~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 133 TG--LFSQIESSKSGDEQVRERALKFLREKL 161 (556)
T ss_dssp HH--HHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred HH--HHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 11 222333222235678999987665443
No 128
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.24 E-value=2.3 Score=37.15 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=59.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-HHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCc
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNL 248 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp-~~Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~~ 248 (363)
+..|..=|++.++.++..|..+|-++++|.. ..+..+.....+..|++++.. .+..|+.|.+.-|-.-...++
T Consensus 39 ~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 39 LKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 4445566788999999999999999999976 578888888999999999998 567888888888777655443
No 129
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.23 E-value=4.4 Score=44.00 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcccCCCchhhHHhcCCHH-HHHHhcCCCCHHHHHHHHHHHHHHhccChHH
Q 017926 149 DSQRALQELLILVEPIDNANDLSKLGGLS-VLVGQLNHPDTDIRKISAWILGKASQNNPLV 208 (363)
Q Consensus 149 ~k~~AL~~L~~Lve~iDnAn~l~~lGgl~-~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~ 208 (363)
.|..|.-.|..|... -.|+...|+|. .++.+|+..+-.+-..|...|-.++.+||+.
T Consensus 164 vkqkaALclL~L~r~---spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~ 221 (938)
T KOG1077|consen 164 VKQKAALCLLRLFRK---SPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES 221 (938)
T ss_pred HHHHHHHHHHHHHhc---CccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH
Confidence 344443344444333 45666677765 6677777777666667777777777766644
No 130
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.19 E-value=4.2 Score=42.49 Aligned_cols=213 Identities=18% Similarity=0.143 Sum_probs=137.1
Q ss_pred HHHHhHHHHHHHHHHcCC----CCHHHHHHHHHHHhhcCCCC----HHHH-HHHHHHHHHcccCCCchhhHHhcCCHHHH
Q 017926 109 ELKKRQMEIKELMEKLKT----PSDAQLIQIAIDDLNNSTLS----LEDS-QRALQELLILVEPIDNANDLSKLGGLSVL 179 (363)
Q Consensus 109 ~l~~r~~~Lkeal~~l~~----~~d~~lmk~al~~L~~~~~s----~e~k-~~AL~~L~~Lve~iDnAn~l~~lGgl~~L 179 (363)
|+ +|+++-.+-|+.-+- +...+.+|+-++.+...-.+ .|.. ..|+--|..+.+++..--.+..-+-+..|
T Consensus 231 El-kRye~w~~El~k~krs~de~p~netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~~ElKMrrkniV~mL 309 (791)
T KOG1222|consen 231 EL-KRYEFWIAELKKTKRSTDEKPKNETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDISVELKMRRKNIVAML 309 (791)
T ss_pred HH-HHHHHHHHHHhhhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHH
Confidence 45 477776665554321 11234455555444322111 1222 34566677788888887788888888999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc
Q 017926 180 VGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 259 (363)
Q Consensus 180 i~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG 259 (363)
+..|.-++.++.......|-.+.- -.+....+.+.|.+.+|++|+....+.++...+.-+=++-= ....+...+..|-
T Consensus 310 VKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSF-D~glr~KMv~~Gl 387 (791)
T KOG1222|consen 310 VKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSF-DSGLRPKMVNGGL 387 (791)
T ss_pred HHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccc-cccccHHHhhccc
Confidence 999998888888887777766653 12234556678999999999999888776655555555532 2334567777888
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhH-HHHHHHHHHhh
Q 017926 260 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDL-QEKVFLEHVFC 334 (363)
Q Consensus 260 ~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~l-qE~al~aL~~~ 334 (363)
++.|..++.+++. +.-|+..++++. .+......|.--..++.+.+.+-++ +..+ .+-.+.|+.+|
T Consensus 388 lP~l~~ll~~d~~----~~iA~~~lYh~S------~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ 454 (791)
T KOG1222|consen 388 LPHLASLLDSDTK----HGIALNMLYHLS------CDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLC 454 (791)
T ss_pred hHHHHHHhCCccc----chhhhhhhhhhc------cCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 9999999998742 223666666665 4667777887778888888776543 2222 23334455543
No 131
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.18 E-value=1.7 Score=35.47 Aligned_cols=91 Identities=12% Similarity=-0.030 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHh--cCcHHHHHHhhc
Q 017926 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILG 268 (363)
Q Consensus 191 r~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~--~gG~~~L~~lL~ 268 (363)
|..+..+|+.++...++.-...+ .-.+|+++..+.+++..||..|..+|-++++.... .++. ..-++.|..++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~---~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARG---EILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHc
Confidence 55666677776665544422222 25799999999999999999999999999886543 3332 356788888888
Q ss_pred CCCccHHHHHHHHHHHHHHh
Q 017926 269 NSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 269 s~~~~~klr~kA~~lL~~L~ 288 (363)
++ +..+|. ++.++-.|.
T Consensus 79 D~--d~~Vr~-~a~~Ld~ll 95 (97)
T PF12755_consen 79 DP--DENVRS-AAELLDRLL 95 (97)
T ss_pred CC--chhHHH-HHHHHHHHh
Confidence 76 555655 556665554
No 132
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.05 E-value=6.1 Score=37.92 Aligned_cols=201 Identities=19% Similarity=0.167 Sum_probs=129.6
Q ss_pred CChHHHHhhHhhcCCCCCcccchhcccCCCHHHHHHhHH---HH-HHHHHHcCCCCHHHHHHHHHHHhh---cCCCCH--
Q 017926 77 SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQM---EI-KELMEKLKTPSDAQLIQIAIDDLN---NSTLSL-- 147 (363)
Q Consensus 77 ~~l~~LL~wsi~~s~~~~~~~~~~~~~~~~~e~l~~r~~---~L-keal~~l~~~~d~~lmk~al~~L~---~~~~s~-- 147 (363)
.+-+++-+|.++-+.|++- |.+ . .|+-+|++ .+ -.++..++. ...+.+|.+.+.- -+..++
T Consensus 23 ~~~dk~~~~i~~l~~~p~r-E~a--L-----~ELskkre~~~dlA~~lW~s~g~--~~~LLqEivaiYp~l~p~~l~~~q 92 (293)
T KOG3036|consen 23 SNNDKAYQLILSLVSPPTR-EMA--L-----LELSKKREPFPDLAPMLWHSFGT--MVALLQEIVAIYPSLSPPTLTPAQ 92 (293)
T ss_pred ccccchhhHHHHhhCCchH-HHH--H-----HHHHHhccCCccccHHHHHhcch--HHHHHHHHHhcccccCCCCCCccc
Confidence 3456688999998887662 111 0 11111211 11 234555553 4567777777542 221221
Q ss_pred -HHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC-----CCHHHHHHHHHHHHHHhccCh-HHHHHHHHcCcHHH
Q 017926 148 -EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH-----PDTDIRKISAWILGKASQNNP-LVQKQVLELGALSK 220 (363)
Q Consensus 148 -e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s-----~~~~Ir~~Aa~~Lgt~aqNNp-~~Q~~~le~G~lp~ 220 (363)
-.-..||.-|.-++...|....|.+..-=-.+-.+|+. +.+-+|-.+..+||.+++|.+ ++-...+..+.+|.
T Consensus 93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 23466777777778888999999987644445567753 568899999999999999754 45555567799999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCcc------cHHHHHhcCc-H-HHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 221 LMKMVKSSFVEEAVKALYTVSSLIRNNLA------GQEMFYVEAG-D-LMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 221 Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~------a~~~f~~~gG-~-~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
.++....+++.-+.-|.+-+.-|+-+... ..+.|...+- + .++.++.+.+ +.++-..+......|+.
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p--s~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMP--SPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcC
Confidence 99999999887788888888887765433 1355555443 2 3444444444 67788888888777763
No 133
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.98 E-value=2.4 Score=44.69 Aligned_cols=163 Identities=12% Similarity=0.091 Sum_probs=114.2
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhcCCcccHHH
Q 017926 178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV----EEAVKALYTVSSLIRNNLAGQEM 253 (363)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~----~v~~kAL~ALSsLiR~~~~a~~~ 253 (363)
.+.+.+.+++..-|..|..-+..+.- .+.....|+...++..|.+++.++.. .+..-.+.|.|.+..+.-...+.
T Consensus 87 ~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~ 165 (713)
T KOG2999|consen 87 RIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES 165 (713)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence 44566777787888888888888775 56677789999999999999998754 45678899999988775544433
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHHh
Q 017926 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHVF 333 (363)
Q Consensus 254 f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~ 333 (363)
+-.. ++.-...+..-+..+..+-..|+..+.++.. ..+.....+.++--+..|+.+|+..|..++-+|...+.
T Consensus 166 ~~~~-fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl-----~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~n- 238 (713)
T KOG2999|consen 166 VSND-FVVSMASYVNAKREDANTLLAALQMLESLVL-----GSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLN- 238 (713)
T ss_pred cccH-HHHHHHHHHhhhhhcccchHHHHHHHHHHHh-----CChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHH-
Confidence 3322 2222222222222233455678888888875 35567778888899999999999999999988666555
Q ss_pred hcccccCchhhhhHHHH
Q 017926 334 CGLVFCTCPCIVRGAVI 350 (363)
Q Consensus 334 ~~~~~~~~~~~~r~~~l 350 (363)
++..-|++..|...+
T Consensus 239 --al~~~a~~~~R~~~~ 253 (713)
T KOG2999|consen 239 --ALFRKAPDDKRFEMA 253 (713)
T ss_pred --HHHhhCChHHHHHHH
Confidence 556668887665433
No 134
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.89 E-value=1.2 Score=39.81 Aligned_cols=86 Identities=10% Similarity=0.049 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcH
Q 017926 230 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL 309 (363)
Q Consensus 230 ~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v 309 (363)
+.+|..++-+++-++..+|...+.+ ++.+..+|+++ ++.+|+.|+..+++|..+ + .+.-.|-+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~-----~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~-----d-----~ik~k~~l 64 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPY-----LPNLYKCLRDE--DPLVRKTALLVLSHLILE-----D-----MIKVKGQL 64 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhH-----HHHHHHHHCCC--CHHHHHHHHHHHHHHHHc-----C-----ceeehhhh
Confidence 5688999999999888787655443 67888999987 678999999999999862 1 12222333
Q ss_pred -HHHHHhccCCChhHHHHHHHHHH
Q 017926 310 -KSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 310 -~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
..++.+|..+|++++..|..++.
T Consensus 65 ~~~~l~~l~D~~~~Ir~~A~~~~~ 88 (178)
T PF12717_consen 65 FSRILKLLVDENPEIRSLARSFFS 88 (178)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77778888889999999888866
No 135
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.67 E-value=11 Score=40.13 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCH-HHHHHHHHHHHHHhc--cChHHHHHHHHcC-cHHHHH
Q 017926 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT-DIRKISAWILGKASQ--NNPLVQKQVLELG-ALSKLM 222 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~-~Ir~~Aa~~Lgt~aq--NNp~~Q~~~le~G-~lp~Ll 222 (363)
++-+..|+-=+.++|.-..+.--..-.|-+..+++|+.++++ .++..|..+-+.+.. ..+...+. ++.| .+..|.
T Consensus 264 ~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~ 342 (675)
T KOG0212|consen 264 PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLT 342 (675)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHH
Confidence 455666777777776655555555555667777888877665 577777665543332 11111111 3443 577788
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 223 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 223 ~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
+.++++..+.|..++.=|.-+-+.+|. +-......-+..|..-|++. +..+-.++.++++++|.
T Consensus 343 ~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~--sd~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 343 KYLSDDREETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDR--SDEVVLLALSLLASICS 406 (675)
T ss_pred HHhhcchHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCc--hhHHHHHHHHHHHHHhc
Confidence 899988888899999999999877654 33333345678888888876 34578899999999996
No 136
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=91.47 E-value=1.5 Score=44.43 Aligned_cols=123 Identities=18% Similarity=0.172 Sum_probs=87.1
Q ss_pred HhcCCC---CHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhc-CC---CHHHHHHHHHHHHHHhcCCcccHHH
Q 017926 181 GQLNHP---DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SS---FVEEAVKALYTVSSLIRNNLAGQEM 253 (363)
Q Consensus 181 ~lL~s~---~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~-s~---~~~v~~kAL~ALSsLiR~~~~a~~~ 253 (363)
..+++. -+.|-..|+.++.....|.|.+-..+.+.|.++.+++-+. .. +.++-...-.+|++||=| ..+.++
T Consensus 113 ~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~ 191 (379)
T PF06025_consen 113 HILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEK 191 (379)
T ss_pred HHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHH
Confidence 344443 4788999999999999999999999999999999999888 32 345555566777878765 678999
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHH-HHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 254 FYVEAGDLMLQDILGNSSFEIRLHR-KAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 254 f~~~gG~~~L~~lL~s~~~~~klr~-kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
|.+.+-+..+.+++.++..-..++. ..+..+.+-..+ +-+++|..++.+.+
T Consensus 192 ~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DE-L~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 192 VKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDE-LMRHHPSLKPDIID 243 (379)
T ss_pred HHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHH-HHccCHHHHHHHHH
Confidence 9999999999999988632211222 244444433322 11466666665543
No 137
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.29 E-value=8.3 Score=40.93 Aligned_cols=106 Identities=17% Similarity=0.139 Sum_probs=81.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc-cHHHH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMF 254 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~-a~~~f 254 (363)
+..+..+|.++..+-|..+..-|..+-.+.| .|-.+......+.|++-|++.++.+..+++.-+++++..... +...|
T Consensus 338 i~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~f 416 (675)
T KOG0212|consen 338 IEVLTKYLSDDREETRIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKF 416 (675)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHH
Confidence 5566678899999999999999998876655 677777778999999999999999999999999999986432 22222
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 255 ~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
. .-|.+.+..+ ..-++.++.+.+..||.
T Consensus 417 l-----~sLL~~f~e~--~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 417 L-----LSLLEMFKED--TKLLEVRGNLIIRQLCL 444 (675)
T ss_pred H-----HHHHHHHhhh--hHHHHhhhhHHHHHHHH
Confidence 2 2233334444 34588899999999986
No 138
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=91.21 E-value=5.5 Score=44.25 Aligned_cols=168 Identities=14% Similarity=0.176 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHh--cCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHH
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~--lGgl~~Li~lL-~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll 222 (363)
.-.+|..|++.+-..+++-. -...+ .|-+..++... ...|..+-..|+.+|..++......-.. +-.+.+|.|+
T Consensus 266 ~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~~~~v~p~ll 342 (815)
T KOG1820|consen 266 KWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-YAKNVFPSLL 342 (815)
T ss_pred chHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-HHHhhcchHH
Confidence 34678888888888776644 11111 22333444433 4678999999999999999865544111 2237889999
Q ss_pred HhhcCCCHHH---HHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCc
Q 017926 223 KMVKSSFVEE---AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE 299 (363)
Q Consensus 223 ~LL~s~~~~v---~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~ 299 (363)
+-+......+ .++++-++++.+. -..-.+.+...+++. +++++.....++...... .++..
T Consensus 343 d~lkekk~~l~d~l~~~~d~~~ns~~----------l~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~~~----~~~~~ 406 (815)
T KOG1820|consen 343 DRLKEKKSELRDALLKALDAILNSTP----------LSKMSEAILEALKGK--NPQIKGECLLLLDRKLRK----LGPKT 406 (815)
T ss_pred HHhhhccHHHHHHHHHHHHHHHhccc----------HHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHhh----cCCcC
Confidence 9998766554 4566666666211 112345677778887 566788866666666642 33344
Q ss_pred chhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 300 PPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 300 ~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
...-.-.++++.++.+....+.++|+.++.++.
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~ 439 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVA 439 (815)
T ss_pred cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHH
Confidence 444444678899999988889999999999987
No 139
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.14 E-value=3.8 Score=44.58 Aligned_cols=160 Identities=13% Similarity=0.135 Sum_probs=106.4
Q ss_pred HhHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHH
Q 017926 112 KRQMEIKELMEKLK-TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190 (363)
Q Consensus 112 ~r~~~Lkeal~~l~-~~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~I 190 (363)
+|+.-+|.++..|+ |+|-..+-.+-++-.... +.+.|.-.-. ++-+.-..+-....+.+..++.-..++++.|
T Consensus 29 kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~--dlelKKlvyL----Yl~nYa~~~P~~a~~avnt~~kD~~d~np~i 102 (734)
T KOG1061|consen 29 KRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTR--DLELKKLVYL----YLMNYAKGKPDLAILAVNTFLKDCEDPNPLI 102 (734)
T ss_pred hHHHHHHHHHhcCccCcchHhhhHHHHhhcccC--CchHHHHHHH----HHHHhhccCchHHHhhhhhhhccCCCCCHHH
Confidence 68888899999886 444333333322222222 2343332222 2223344444555667777777778899999
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCC
Q 017926 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (363)
Q Consensus 191 r~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~ 270 (363)
|..|...+|.+-- ++..++ ...+|.+.++++.+.+|..|...+..+=+- ..+.+.+.|-++.|..++.+.
T Consensus 103 R~lAlrtm~~l~v--~~i~ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~ 172 (734)
T KOG1061|consen 103 RALALRTMGCLRV--DKITEY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDS 172 (734)
T ss_pred HHHHhhceeeEee--hHHHHH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCC
Confidence 9999888887653 334444 467899999999988998888888877432 346777888899999999965
Q ss_pred CccHHHHHHHHHHHHHHhh
Q 017926 271 SFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 271 ~~~~klr~kA~~lL~~L~~ 289 (363)
++-+-..|+.++..+..
T Consensus 173 --~p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 173 --NPMVVANALAALSEIHE 189 (734)
T ss_pred --CchHHHHHHHHHHHHHH
Confidence 34467778888887764
No 140
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.06 E-value=0.36 Score=51.56 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=65.3
Q ss_pred hhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 017926 167 ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (363)
Q Consensus 167 An~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~ 246 (363)
+.+++..|.-..++.-|+.+--+||..|...++.++++.|..... ++..|++|++++-..||.+|+++|-.|..|
T Consensus 366 ~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 366 EESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred ccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 557777888888898888888999999999999999999987765 467899999998888999999999888765
No 141
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=91.05 E-value=0.88 Score=49.47 Aligned_cols=153 Identities=16% Similarity=0.119 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHH-HHHhcCCCCHHHHHHHHHHHHHHhccCh-
Q 017926 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSV-LVGQLNHPDTDIRKISAWILGKASQNNP- 206 (363)
Q Consensus 129 d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~-Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp- 206 (363)
-+.+.-..+.-|+|+ +.+.|..|++-+..+.--+.+.....-+|-+.. |.+.|...++++.-....+|..++.-.-
T Consensus 797 lpqi~stiL~rLnnk--sa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm 874 (1172)
T KOG0213|consen 797 LPQICSTILWRLNNK--SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGM 874 (1172)
T ss_pred hHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccc
Confidence 345556667777776 567888888888877666666655555555544 4578888999998877777777764220
Q ss_pred -HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccH--HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 017926 207 -LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 283 (363)
Q Consensus 207 -~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~--~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~l 283 (363)
+.+-= -.|.+|.|.-+|++....++...+--++.|+-..+.-. ....+ .-=-|+++|++. .-.+|+.|...
T Consensus 875 ~km~pP--i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR--IcfeLlelLkah--kK~iRRaa~nT 948 (1172)
T KOG0213|consen 875 TKMTPP--IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR--ICFELLELLKAH--KKEIRRAAVNT 948 (1172)
T ss_pred cccCCC--hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHHH--HHHHHHHHHhh
Confidence 00100 13789999999999888899999988888887665521 11111 111245555554 33578889888
Q ss_pred HHHHhh
Q 017926 284 VGDLAK 289 (363)
Q Consensus 284 L~~L~~ 289 (363)
+.+++.
T Consensus 949 fG~Iak 954 (1172)
T KOG0213|consen 949 FGYIAK 954 (1172)
T ss_pred hhHHHH
Confidence 888875
No 142
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=91.02 E-value=3.9 Score=35.06 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=57.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcCCCH-H-HHHHHHHHHHHHhcCC
Q 017926 177 SVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSFV-E-EAVKALYTVSSLIRNN 247 (363)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s~~~-~-v~~kAL~ALSsLiR~~ 247 (363)
..|-.-|++.++.++..|..+|-.+++|. +..+..+...+.+..|.+++..... . |+.|++..+-+-...+
T Consensus 40 r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 40 RLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 34556678899999999999999999994 6688888888999999999987542 3 8888888777655443
No 143
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.91 E-value=20 Score=36.44 Aligned_cols=186 Identities=18% Similarity=0.196 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhc-CCCCHHHHHH----HHHHH-HH
Q 017926 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKI----SAWIL-GK 200 (363)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL-~s~~~~Ir~~----Aa~~L-gt 200 (363)
|+..+++.+.+....+... +..+..++..+.-++........+.. -+..+..-+ ...++..+.. .+|+. |-
T Consensus 185 ~~~~~ll~~l~~~~~~~~~-~~~~~~~~~~la~LvNK~~~~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL 261 (415)
T PF12460_consen 185 PDLEELLQSLLNLALSSED-EFSRLAALQLLASLVNKWPDDDDLDE--FLDSLLQSISSSEDSELRPQALEILIWITKAL 261 (415)
T ss_pred cCHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCCChhhHHH--HHHHHHhhhcccCCcchhHHHHHHHHHHHHHH
Confidence 4444566677776655443 66777788877777766433332221 122222222 2223333333 33444 44
Q ss_pred HhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc--------cHHHHHhcC----cHHHHHHhhc
Q 017926 201 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--------GQEMFYVEA----GDLMLQDILG 268 (363)
Q Consensus 201 ~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~--------a~~~f~~~g----G~~~L~~lL~ 268 (363)
+..++|...+. +..|+++|.+ +++...|..++.-++.+.+. ..+.+++.- -++.|++..+
T Consensus 262 v~R~~~~~~~~------~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~ 333 (415)
T PF12460_consen 262 VMRGHPLATEL------LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK 333 (415)
T ss_pred HHcCCchHHHH------HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHh
Confidence 55677765543 6789999988 44566666777777666322 233333332 3455666555
Q ss_pred CCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHH--hCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 269 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR--DRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 269 s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~--~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.. +...|..-..+++++..+ -| .+.+. -..++|.|++.|..+|.+++..++.+|.
T Consensus 334 ~~--~~~~k~~yL~ALs~ll~~-----vP--~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~ 390 (415)
T PF12460_consen 334 EA--DDEIKSNYLTALSHLLKN-----VP--KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLK 390 (415)
T ss_pred hc--ChhhHHHHHHHHHHHHhh-----CC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 54 223566777788888853 22 11222 1368899999999999999999999977
No 144
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.41 E-value=4.6 Score=39.18 Aligned_cols=107 Identities=19% Similarity=0.183 Sum_probs=78.6
Q ss_pred CCHHHHH-HhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHH
Q 017926 174 GGLSVLV-GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (363)
Q Consensus 174 Ggl~~Li-~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~ 252 (363)
+.+..|| +.++++++.||..|..|+|-++-=+.+... ..++.+...++.++..++..|+.+|.-++.-|...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~-- 98 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGID-- 98 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch--
Confidence 4455555 788999999999999999999975553333 24788888887778899999999999887765432
Q ss_pred HHHhc----------CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 253 MFYVE----------AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 253 ~f~~~----------gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
.|-.. .-..++...+.+. +..+|.-|+--++-|..
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKLLL 143 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHh
Confidence 22222 2356777777776 55688888887777764
No 145
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=90.08 E-value=2 Score=37.48 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHH
Q 017926 234 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313 (363)
Q Consensus 234 ~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv 313 (363)
-..+-.|+-+|+..+.+. ..++..|..=|+++ +..++..|+.++..++. +.+..+...+.+.+++..|+
T Consensus 22 w~~ileicD~In~~~~~~-----k~a~ral~krl~~~--n~~vql~AL~LLe~~vk----NCG~~fh~evas~~fl~~l~ 90 (142)
T cd03569 22 LASILEICDMIRSKDVQP-----KYAMRALKKRLLSK--NPNVQLYALLLLESCVK----NCGTHFHDEVASREFMDELK 90 (142)
T ss_pred HHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH----HCCHHHHHHHhhHHHHHHHH
Confidence 355666788887654332 24566777778876 57789999999999987 35677788888999999999
Q ss_pred HhccC-CChhHHHHHHHHHHhhcccc
Q 017926 314 DLTAS-ADLDLQEKVFLEHVFCGLVF 338 (363)
Q Consensus 314 ~lL~~-~d~~lqE~al~aL~~~~~~~ 338 (363)
.++.. .+..++++++..+..++...
T Consensus 91 ~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 91 DLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 99984 58899999999998666533
No 146
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=90.07 E-value=1.9 Score=37.24 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=56.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcCCC-HH---HHHHHHHHHHHHhc
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSF-VE---EAVKALYTVSSLIR 245 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s~~-~~---v~~kAL~ALSsLiR 245 (363)
+..|-.-|++.++.++..|..+|-.+++|. +..+..+.....+..|.+++.+.. .. |+.|++--|..-..
T Consensus 44 ~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 44 ARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 445567788899999999999999999997 788888888889999999998654 33 78888776665443
No 147
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.97 E-value=0.91 Score=48.65 Aligned_cols=99 Identities=15% Similarity=0.093 Sum_probs=63.5
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcC
Q 017926 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (363)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~ 295 (363)
|+-..++.=|.++--+||..|+++++++..+.|.-. .-.+..|+..+.+. ..-+|.||.+.+..++.+.
T Consensus 373 GACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDMfNDE--~~~VRL~ai~aL~~Is~~l---- 441 (823)
T KOG2259|consen 373 GACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDMFNDE--IEVVRLKAIFALTMISVHL---- 441 (823)
T ss_pred cccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHh----
Confidence 333334433433334689999999999998876532 24577899999987 4568999999999998531
Q ss_pred CCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.+++..++.+.+.|...+++++|....-|.
T Consensus 442 -------~i~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 442 -------AIREEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred -------eecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 122334455555555555555555544444
No 148
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=89.80 E-value=0.96 Score=39.94 Aligned_cols=100 Identities=18% Similarity=0.108 Sum_probs=75.9
Q ss_pred hcCCCCHHHHHHHHHHHHHHhccChHHHHHHH-HcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCcccHHHHHhcC
Q 017926 182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVK--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 258 (363)
Q Consensus 182 lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~l-e~G~lp~Ll~LL~--s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~g 258 (363)
++...+.+-...+..+++.+-+--|.+-..++ ..|.++.++.+.. +.+..++..++-+|+.-+-+ .....|+..+
T Consensus 51 ~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~ 128 (157)
T PF11701_consen 51 LLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKN 128 (157)
T ss_dssp HHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHH
T ss_pred HHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHH
Confidence 33444444667889999999999898887776 5699999999999 66778899999999988754 5577888889
Q ss_pred cHHHHHHhhcCCCccHH-HHHHHHHHH
Q 017926 259 GDLMLQDILGNSSFEIR-LHRKAVSLV 284 (363)
Q Consensus 259 G~~~L~~lL~s~~~~~k-lr~kA~~lL 284 (363)
|++.|...++... +.. +|..|+-.|
T Consensus 129 ~~~~L~~~~~~~~-~~~~ir~~A~v~L 154 (157)
T PF11701_consen 129 YVSWLKELYKNSK-DDSEIRVLAAVGL 154 (157)
T ss_dssp CHHHHHHHTTTCC--HH-CHHHHHHHH
T ss_pred HHHHHHHHHcccc-chHHHHHHHHHHH
Confidence 9999999996543 444 666665544
No 149
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=89.76 E-value=8.9 Score=40.49 Aligned_cols=163 Identities=13% Similarity=0.078 Sum_probs=94.8
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhc----cChHHH
Q 017926 138 DDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQ----NNPLVQ 209 (363)
Q Consensus 138 ~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s----~~~~Ir~~Aa~~Lgt~aq----NNp~~Q 209 (363)
+.+.+...+..+...++-.+...+...+ ...+..+..++++ .++.++..|.-.+|+++. +++.++
T Consensus 364 ~~i~~~~~~~~ea~~~~~~~~~~~~~Pt-------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~ 436 (574)
T smart00638 364 QWIKNKKITPLEAAQLLAVLPHTARYPT-------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP 436 (574)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHhhhcCC-------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 3444555555555555555555443322 1234445566654 366788888888887764 344443
Q ss_pred HHHHHcCcHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhc-CCCccHHHHHHHHHHH
Q 017926 210 KQVLELGALSKLMKMVKS----SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG-NSSFEIRLHRKAVSLV 284 (363)
Q Consensus 210 ~~~le~G~lp~Ll~LL~s----~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~-s~~~~~klr~kA~~lL 284 (363)
.. +....++.|.+.|.. .+...+.-+|-||+|+ +++... ..|..++. ....+..+|.-|++++
T Consensus 437 ~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~--g~~~~i---------~~l~~~l~~~~~~~~~iR~~Av~Al 504 (574)
T smart00638 437 DF-VLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA--GHPSSI---------KVLEPYLEGAEPLSTFIRLAAILAL 504 (574)
T ss_pred hh-hHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc--CChhHH---------HHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 22 223467777776653 2334466788888887 445433 33444443 3334678999999999
Q ss_pred HHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC--ChhHHHHHHHHHH
Q 017926 285 GDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKVFLEHV 332 (363)
Q Consensus 285 ~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~lqE~al~aL~ 332 (363)
..++.. .+. .+-+.+..+..+. +.++|-.|..+|.
T Consensus 505 r~~a~~-----~p~--------~v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 505 RNLAKR-----DPR--------KVQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred HHHHHh-----Cch--------HHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 988742 211 2334455555543 7888888888777
No 150
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=89.64 E-value=4.7 Score=40.20 Aligned_cols=183 Identities=16% Similarity=0.127 Sum_probs=128.2
Q ss_pred CCHHHHHHHHHHHHHcccC-CCchh--hH-HhcCCHHHHHHh-c-CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcH
Q 017926 145 LSLEDSQRALQELLILVEP-IDNAN--DL-SKLGGLSVLVGQ-L-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 218 (363)
Q Consensus 145 ~s~e~k~~AL~~L~~Lve~-iDnAn--~l-~~lGgl~~Li~l-L-~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~l 218 (363)
.+.|.|..+...+..++.. ++... .. .-..-.|-++.. + ..+++++-..+..+|..++.. +.+-+.++....+
T Consensus 88 L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~-e~l~~~iL~~~~f 166 (335)
T PF08569_consen 88 LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKH-ESLAKIILYSECF 166 (335)
T ss_dssp S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTS-HHHHHHHHTSGGG
T ss_pred CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhh-HHHHHHHhCcHHH
Confidence 3567777776666665554 33311 10 111222333332 2 235788888999999999974 6677788889999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc---HHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcC
Q 017926 219 SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG---DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (363)
Q Consensus 219 p~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG---~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~ 295 (363)
..+.+.+..++-++...|...+-.+...|+.....|+..+= +.....+|.+++ --.|+.++-||+.|..
T Consensus 167 ~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~N--YvtkrqslkLL~elll------ 238 (335)
T PF08569_consen 167 WKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSN--YVTKRQSLKLLGELLL------ 238 (335)
T ss_dssp GGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SS--HHHHHHHHHHHHHHHH------
T ss_pred HHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCC--eEeehhhHHHHHHHHH------
Confidence 99999999999999999999999988888888888887652 467888888874 4579999999999996
Q ss_pred CCCcch----hHHhCCcHHHHHHhccCCChhHHHHHHHHHHhhcc
Q 017926 296 HKVEPP----LFRDRFFLKSVVDLTASADLDLQEKVFLEHVFCGL 336 (363)
Q Consensus 296 ~~~~~~----~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~~ 336 (363)
+.++.. .+-+..-++.++.+|++....+|-.|-+......+
T Consensus 239 dr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 239 DRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp SGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 333332 33456778999999999999999888888764444
No 151
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.51 E-value=1.5 Score=35.41 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=56.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~ 249 (363)
+...+..|+++.+.||.++...|+.+...+. ....-..+.+..++..|+++++-+--.|+.+++.++.-+|.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3455677889999999999999999999776 11112246778888899988887888899999999887765
No 152
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=89.30 E-value=21 Score=34.11 Aligned_cols=175 Identities=17% Similarity=0.119 Sum_probs=105.0
Q ss_pred HHHHHHHHHHcccC-CCchhhHHhcCCHHHHH--------HhcCC----CCHHHHHHHHHHHHHHhccChHHHHHHHHcC
Q 017926 150 SQRALQELLILVEP-IDNANDLSKLGGLSVLV--------GQLNH----PDTDIRKISAWILGKASQNNPLVQKQVLELG 216 (363)
Q Consensus 150 k~~AL~~L~~Lve~-iDnAn~l~~lGgl~~Li--------~lL~s----~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G 216 (363)
|+.||++|-+--++ .|.|-.+-...|++..+ .+|+- +...=|..-+-.|-.+...+|+.+..|++..
T Consensus 62 kEqaL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~~Fl~Ah 141 (315)
T COG5209 62 KEQALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKKVFLDAH 141 (315)
T ss_pred HHHHHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchheeeeecc
Confidence 44466666665555 46777776666665432 23331 2344455555555556667999999999875
Q ss_pred c---HHHHHHhhcCCCH--HHHHHHHHHHHHHhcCCcccHHHHH-hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 217 A---LSKLMKMVKSSFV--EEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 217 ~---lp~Ll~LL~s~~~--~v~~kAL~ALSsLiR~~~~a~~~f~-~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
. +-+.+...++.++ ..|..++..|+++++|..+-...|. ....++++.+++... +.--|.-|+|.+.-+.-
T Consensus 142 iplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~g--SElSktvaifI~qkil~- 218 (315)
T COG5209 142 IPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELG--SELSKTVAIFIFQKILG- 218 (315)
T ss_pred cceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhh--hHHHHHHHHHHHHHHhc-
Confidence 3 2233333333332 3588999999999999766555555 467899999999876 34567778888776652
Q ss_pred hhhcCCCCcchh-------HH-hCCcHHHHHHhcc-CCChhHHHHHHHHHH
Q 017926 291 QLENMHKVEPPL-------FR-DRFFLKSVVDLTA-SADLDLQEKVFLEHV 332 (363)
Q Consensus 291 ~~~~~~~~~~~~-------l~-~~g~v~~Lv~lL~-~~d~~lqE~al~aL~ 332 (363)
++.-.+. |. -..++..++..+- .+.-.+..+++++-.
T Consensus 219 -----dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYl 264 (315)
T COG5209 219 -----DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYL 264 (315)
T ss_pred -----cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHhe
Confidence 3222211 11 1234455554442 335566667766644
No 153
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=89.16 E-value=1.1 Score=41.11 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhh
Q 017926 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 267 (363)
Q Consensus 188 ~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL 267 (363)
..+-..+...|...+.+|++.|..+.++ ++.++..+.......-.-+...+.+++++|+.....+.+.. +..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHH
Confidence 4677899999999999999999999876 44344444433322234567778889999999888887766 88899988
Q ss_pred cCCCccHHHHHHHHHHHHHHhhh
Q 017926 268 GNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 268 ~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
...+ -+.+-+-++..||..
T Consensus 152 ~~~g----r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 152 RKHG----RQPRYLDFLSSLCVC 170 (207)
T ss_dssp -----------------------
T ss_pred HHcC----CChHHHHHHhhhccc
Confidence 8742 234677788888864
No 154
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=88.97 E-value=5 Score=39.92 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=98.3
Q ss_pred CchhhHHhc-CCHHHHHHhcCC-CCHHHHHHHHHHHHHHhccChH-HHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHH
Q 017926 165 DNANDLSKL-GGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKSS--FVEEAVKALYT 239 (363)
Q Consensus 165 DnAn~l~~l-Ggl~~Li~lL~s-~~~~Ir~~Aa~~Lgt~aqNNp~-~Q~~~le~G~lp~Ll~LL~s~--~~~v~~kAL~A 239 (363)
..|.++.++ ..+.-++.+.+. ....|-..++.++.+++...|+ .-...+-.|-+.+-+++|... +++.-+.=+.-
T Consensus 225 ~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~ 304 (432)
T COG5231 225 ECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIER 304 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHH
Confidence 345555554 344455566554 3566777888888888874432 222233345455666666542 12111111111
Q ss_pred HH----------------------HHhcCCcc---------cHHHHHhc--CcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 017926 240 VS----------------------SLIRNNLA---------GQEMFYVE--AGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (363)
Q Consensus 240 LS----------------------sLiR~~~~---------a~~~f~~~--gG~~~L~~lL~s~~~~~klr~kA~~lL~~ 286 (363)
|- .+..-.|+ +.++|.+- .-+..|.+++++.+.+.-+ .-|+.=|..
T Consensus 305 i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i-~vAc~Di~~ 383 (432)
T COG5231 305 IRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWI-CVACSDIFQ 383 (432)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceE-eeeHhhHHH
Confidence 11 12211222 45666653 4678888999887544222 235555666
Q ss_pred HhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 287 L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+.. ..|+.+..+...|+=..++++++++|++++=.|+.|+-
T Consensus 384 ~Vr-----~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q 424 (432)
T COG5231 384 LVR-----ASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQ 424 (432)
T ss_pred HHH-----hCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHH
Confidence 664 57888999999999999999999999999999999977
No 155
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=88.92 E-value=4.5 Score=41.00 Aligned_cols=122 Identities=12% Similarity=0.044 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhc---cChHHHHHHHH-cCcHHHHHHhhcCCC---HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHH
Q 017926 192 KISAWILGKASQ---NNPLVQKQVLE-LGALSKLMKMVKSSF---VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 264 (363)
Q Consensus 192 ~~Aa~~Lgt~aq---NNp~~Q~~~le-~G~lp~Ll~LL~s~~---~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~ 264 (363)
+.-...|..+.+ ++...-..+++ ...+..|-.++++.. ..+-.-|+..++.+|.+.|.....+.+.|-++.++
T Consensus 78 K~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L 157 (379)
T PF06025_consen 78 KSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFL 157 (379)
T ss_pred HHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHH
Confidence 344455666666 34444444555 344445556666654 35677899999999999898888899999999888
Q ss_pred Hhhc-CC-CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC
Q 017926 265 DILG-NS-SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 319 (363)
Q Consensus 265 ~lL~-s~-~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~ 319 (363)
..+. .. -.+..+-.-.-.++..||- +....+.+++.+.++.+.+++.+.
T Consensus 158 ~~i~~~~i~~s~e~l~~lP~~l~AicL------N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 158 DAITAKGILPSSEVLTSLPNVLSAICL------NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHHhccCCCCcHHHHHHHHHHHhHHhc------CHHHHHHHHhcChHHHHHHHhCCH
Confidence 8887 32 1234455566677888884 556778888888888888887765
No 156
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=88.88 E-value=3.5 Score=37.56 Aligned_cols=146 Identities=12% Similarity=-0.001 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhcc-ChHHH----HHHH------HcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHh
Q 017926 189 DIRKISAWILGKASQN-NPLVQ----KQVL------ELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (363)
Q Consensus 189 ~Ir~~Aa~~Lgt~aqN-Np~~Q----~~~l------e~G~lp~Ll~-LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~ 256 (363)
.||..|..+|.++++. .++.= -.++ ..+.-+.|+. ++.+++..+|..|+.+|+.|+.+..+....-.+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3799999999999998 43211 0111 1223444554 444556789999999999999886443322222
Q ss_pred cC----c---------------HHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhcc
Q 017926 257 EA----G---------------DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA 317 (363)
Q Consensus 257 ~g----G---------------~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~ 317 (363)
.. . -..|...|+.++ +..+.......+..|+..- ........+. ..++..+..++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~t---PY~rL~~~ll-~~~v~~v~~~l~ 155 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQAT---PYHRLPPGLL-TEVVTQVRPLLR 155 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccC---ChhhcCHhHH-HHHHHHHHHHHh
Confidence 22 1 124555566653 3345566677777776421 1111111111 123344455566
Q ss_pred CCChhHHHHHHHHHHhhccccc
Q 017926 318 SADLDLQEKVFLEHVFCGLVFC 339 (363)
Q Consensus 318 ~~d~~lqE~al~aL~~~~~~~~ 339 (363)
+.|++++..++.++.......+
T Consensus 156 ~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 156 HRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred cCCCcHHHHHHHHHHHHHcCCC
Confidence 7899999999999884444433
No 157
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=88.86 E-value=4.4 Score=46.03 Aligned_cols=134 Identities=9% Similarity=-0.034 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHHHc----CcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHH
Q 017926 189 DIRKISAWILGKASQNNPLVQKQVLEL----GALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 263 (363)
Q Consensus 189 ~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~----G~lp~Ll~LL~s~~-~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L 263 (363)
+=...+..+|.++..-||.....|-.. |.++.+..++.... ..++.-|+..++-+ ..|.+........|.+..|
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~-Tan~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLA-TANKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHH-hcccHHHHHHHhhhHHHHH
Confidence 344688999999999999766655432 77888888887654 45677777777655 4567888889999999999
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHHHHHHHHHH
Q 017926 264 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKVFLEHV 332 (363)
Q Consensus 264 ~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~aL~ 332 (363)
..+|.+- +..|..++..++.|++ .++......++|.+..+.+++... +++.+.+++.-+.
T Consensus 1819 L~lLHS~---PS~R~~vL~vLYAL~S------~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLla 1879 (2235)
T KOG1789|consen 1819 LTLLHSQ---PSMRARVLDVLYALSS------NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLA 1879 (2235)
T ss_pred HHHHhcC---hHHHHHHHHHHHHHhc------CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHH
Confidence 9999985 3478999999999985 556666667889999999999876 5556666665554
No 158
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=88.47 E-value=12 Score=36.99 Aligned_cols=148 Identities=16% Similarity=0.064 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHHhccChHHHHHHHHc-------C----cHHHHHHhhcCCC-----HHHHH-HHHHHHHHHhcCCc
Q 017926 186 PDTDIRKISAWILGKASQNNPLVQKQVLEL-------G----ALSKLMKMVKSSF-----VEEAV-KALYTVSSLIRNNL 248 (363)
Q Consensus 186 ~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~-------G----~lp~Ll~LL~s~~-----~~v~~-kAL~ALSsLiR~~~ 248 (363)
..-++|..|+.|+-.-..+|+..|..|++. + ....|+.-|-+.+ +..+. .|...++.++++++
T Consensus 50 ~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-H
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCH
Confidence 367899999999999999999999999874 1 1223554444221 23343 78889999999999
Q ss_pred ccHHHHHhc------Cc------HHHHHHhhcCC---CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhC-CcHHHH
Q 017926 249 AGQEMFYVE------AG------DLMLQDILGNS---SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSV 312 (363)
Q Consensus 249 ~a~~~f~~~------gG------~~~L~~lL~s~---~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~-g~v~~L 312 (363)
.+.+...+. .| ++.+..+|... +.+.+++.--+.||..-+. .++.....|.++ .-++.|
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~-----e~p~AV~~FL~~~s~l~~L 204 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLF-----ECPDAVNDFLSEGSNLQSL 204 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHT-----T-HHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHh-----CCHHHHHHHHcCcchHHHH
Confidence 887776653 12 34455555441 2356666555555555553 455555666554 689999
Q ss_pred HHhcc-CCChhHHHHHHHHHHhhcccc
Q 017926 313 VDLTA-SADLDLQEKVFLEHVFCGLVF 338 (363)
Q Consensus 313 v~lL~-~~d~~lqE~al~aL~~~~~~~ 338 (363)
++... .++.+..-+.|-|+.+-.+++
T Consensus 205 i~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 205 IEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 99754 446666667777776444443
No 159
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.43 E-value=23 Score=36.71 Aligned_cols=177 Identities=16% Similarity=0.083 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-----C----hHHHHHHHHcCcHH
Q 017926 149 DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-----N----PLVQKQVLELGALS 219 (363)
Q Consensus 149 ~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN-----N----p~~Q~~~le~G~lp 219 (363)
+....++.+--+....|.-..|..++|++.|+.+|.|+|.+|-......+-.++-. + ...-+..++.++++
T Consensus 100 dLhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vla 179 (536)
T KOG2734|consen 100 DLHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLA 179 (536)
T ss_pred cHHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHH
Confidence 34556777777778889999999999999999999999999999999988888742 1 13445667889999
Q ss_pred HHHHhhcCCCHHH------HHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhh
Q 017926 220 KLMKMVKSSFVEE------AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293 (363)
Q Consensus 220 ~Ll~LL~s~~~~v------~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~ 293 (363)
.|++-+.-=+.++ ...++.-+-+++.-.+.......+.|-+..|..-+.....-..-+.-+.-+++-+..
T Consensus 180 LLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq---- 255 (536)
T KOG2734|consen 180 LLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQ---- 255 (536)
T ss_pred HHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhc----
Confidence 9999887432222 234555555665544555566666766677666343321111123334444444442
Q ss_pred cCCCCcchhHHhCCcHHHHHHhccC---C------ChhHHHHHHHH
Q 017926 294 NMHKVEPPLFRDRFFLKSVVDLTAS---A------DLDLQEKVFLE 330 (363)
Q Consensus 294 ~~~~~~~~~l~~~g~v~~Lv~lL~~---~------d~~lqE~al~a 330 (363)
...+.+..+-.-..+..++.-+.. . ..+..|..-.+
T Consensus 256 -~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdc 300 (536)
T KOG2734|consen 256 -NSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDC 300 (536)
T ss_pred -cCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHH
Confidence 222355555566666666666641 1 23555666666
No 160
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=88.35 E-value=2 Score=37.59 Aligned_cols=115 Identities=13% Similarity=0.076 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHH
Q 017926 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (363)
Q Consensus 235 kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~ 314 (363)
..+-.|+-+|+..+.+- -..+..|..=|.+. ++.++..|+.++-.++. |.+..+...+.+..++..|+.
T Consensus 19 ~~il~icD~I~~~~~~~-----k~a~ral~KRl~~~--n~~v~l~AL~LLe~~vk----NCG~~fh~evask~Fl~eL~k 87 (144)
T cd03568 19 GLILDVCDKVKSDENGA-----KDCLKAIMKRLNHK--DPNVQLRALTLLDACAE----NCGKRFHQEVASRDFTQELKK 87 (144)
T ss_pred HHHHHHHHHHhcCCccH-----HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HCCHHHHHHHhhHHHHHHHHH
Confidence 34455666666543222 23455666667776 56789999999999987 467778888889999999999
Q ss_pred hccC-CChhHHHHHHHHHHhhcccccCchh--hhhHHHHHHhhhhcccc
Q 017926 315 LTAS-ADLDLQEKVFLEHVFCGLVFCTCPC--IVRGAVIVAEYIYINFS 360 (363)
Q Consensus 315 lL~~-~d~~lqE~al~aL~~~~~~~~~~~~--~~r~~~l~~~~~~~~~~ 360 (363)
++.. .+..++++++..+..++......++ .+++.--.....|+.|.
T Consensus 88 l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~~G~~f~ 136 (144)
T cd03568 88 LINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMSDLYKKLKNEGPDLV 136 (144)
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHcCCCCC
Confidence 9998 6999999999999877654443332 23333334445566654
No 161
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=88.12 E-value=1.8 Score=46.28 Aligned_cols=153 Identities=13% Similarity=0.114 Sum_probs=96.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHH-HHHHhcCCCCHHHHHHHHHHHHHHhccChHHH
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLS-VLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 209 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~-~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q 209 (363)
.++...++.|+++ +++.|+.|++-...++--+.+...+..+.-+. +|.+.|...++++.-....+|+.+..-.....
T Consensus 604 ~ivStiL~~L~~k--~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 604 MIVSTILKLLRSK--PPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHHhcCC--CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 4556677777765 56778888877766655444433333222222 34567778899998888888877775322110
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccH--HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 017926 210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287 (363)
Q Consensus 210 ~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~--~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L 287 (363)
-+-=-.|.+|.|.-+|.+....+.+..+--++-|+.+.|... ....+ .---|+..|++- +-.+|+.|.-.+.++
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR--IcfeLvd~Lks~--nKeiRR~A~~tfG~I 757 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR--ICFELVDSLKSW--NKEIRRNATETFGCI 757 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHHh--hHHHHHhhhhhhhhH
Confidence 000124789999999999888888888888888888766521 11111 111245556655 345788898888888
Q ss_pred hh
Q 017926 288 AK 289 (363)
Q Consensus 288 ~~ 289 (363)
..
T Consensus 758 s~ 759 (975)
T COG5181 758 SR 759 (975)
T ss_pred Hh
Confidence 75
No 162
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=88.12 E-value=26 Score=33.79 Aligned_cols=177 Identities=18% Similarity=0.103 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHcccCC-CchhhHHhcCCHH-HHHH-h------cC----CCCHHHHHHHHHHHHHHhccChHHHHHHHH
Q 017926 148 EDSQRALQELLILVEPI-DNANDLSKLGGLS-VLVG-Q------LN----HPDTDIRKISAWILGKASQNNPLVQKQVLE 214 (363)
Q Consensus 148 e~k~~AL~~L~~Lve~i-DnAn~l~~lGgl~-~Li~-l------L~----s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le 214 (363)
+.++.||.+|..--+.. |.|.-+-+.-|.+ .+++ . |+ ++...-|..-+-+|-.++..+|+.+..|++
T Consensus 39 p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~ 118 (293)
T KOG3036|consen 39 PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLR 118 (293)
T ss_pred chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHHHH
Confidence 55777888887766653 6676655543333 3332 1 21 234556766677777777789999999999
Q ss_pred cCcHHHHHHhhcCC----C-HHHHHHHHHHHHHHhcCCcccHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 215 LGALSKLMKMVKSS----F-VEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 215 ~G~lp~Ll~LL~s~----~-~~v~~kAL~ALSsLiR~~~~a~~~f~~-~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
...=-.|-.+|... + +-.|..++.-|++++++.......|.- .+.++..++.+... +.--|.-|+|.+.-+.
T Consensus 119 A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G--SelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 119 AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG--SELSKTVATFILQKIL 196 (293)
T ss_pred ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc--cHHHHHHHHHHHHHHh
Confidence 86433334444432 2 246899999999999997766666664 57889999999887 3446777888877766
Q ss_pred hhhhhcCCCCc-------chhHH-hCCcHHHHHHhcc-CCChhHHHHHHHHHH
Q 017926 289 KCQLENMHKVE-------PPLFR-DRFFLKSVVDLTA-SADLDLQEKVFLEHV 332 (363)
Q Consensus 289 ~~~~~~~~~~~-------~~~l~-~~g~v~~Lv~lL~-~~d~~lqE~al~aL~ 332 (363)
. ++.- .++|. -..++..++..|. .++..+..++.++..
T Consensus 197 l------dD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYl 243 (293)
T KOG3036|consen 197 L------DDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYL 243 (293)
T ss_pred h------ccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3 2221 12221 1234444444443 457788888888766
No 163
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=87.80 E-value=6.3 Score=45.12 Aligned_cols=133 Identities=19% Similarity=0.123 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHcccC--CCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHh
Q 017926 147 LEDSQRALQELLILVEP--IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lve~--iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~L 224 (363)
+=.|..-+++|..||.- ..-+||+. +..|+.+|+..+..+|..=..-|.-++ -.++..-++.+.+|.|.+=
T Consensus 592 ~~Vkr~Lle~i~~LC~FFGk~ksND~i----LshLiTfLNDkDw~LR~aFfdsI~gvs---i~VG~rs~seyllPLl~Q~ 664 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFFGKEKSNDVI----LSHLITFLNDKDWRLRGAFFDSIVGVS---IFVGWRSVSEYLLPLLQQG 664 (1431)
T ss_pred hHHHHHHHHHHHHHHHHhhhcccccch----HHHHHHHhcCccHHHHHHHHhhccceE---EEEeeeeHHHHHHHHHHHh
Confidence 45677778888887764 24566665 788999999999999865544444332 1234444577889999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 225 L~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
|.+..+.|.++||++|++||...---...+ ..-++....+|-++ +.-+|+-++..|.....+
T Consensus 665 ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v--~~i~~~v~PlL~hP--N~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 665 LTDGEEAVIVSALGSLSILIKLGLLRKPAV--KDILQDVLPLLCHP--NLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred ccCcchhhHHHHHHHHHHHHHhcccchHHH--HHHHHhhhhheeCc--hHHHHHHHHHHHHHHHhh
Confidence 999888999999999999998643222222 23455666667777 677999999999888753
No 164
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.46 E-value=57 Score=37.58 Aligned_cols=170 Identities=14% Similarity=0.127 Sum_probs=104.5
Q ss_pred HHHHhHHHHHHHH-HHcCC--CCHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcccCCC--chhhHHhcCCHHHHH
Q 017926 109 ELKKRQMEIKELM-EKLKT--PSDAQLIQIAIDDLNNST---LSLEDSQRALQELLILVEPID--NANDLSKLGGLSVLV 180 (363)
Q Consensus 109 ~l~~r~~~Lkeal-~~l~~--~~d~~lmk~al~~L~~~~---~s~e~k~~AL~~L~~Lve~iD--nAn~l~~lGgl~~Li 180 (363)
.+..|+.+|+-.. .-+.. .+.....+.++..+.... ........-|+.+.-++.-.+ +...+. .+.
T Consensus 586 ~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~------~v~ 659 (1176)
T KOG1248|consen 586 ILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF------TVD 659 (1176)
T ss_pred cHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH------Hhh
Confidence 3556888888776 33332 223445566555543221 111222333444444444333 222222 444
Q ss_pred Hhc-CCCCHHHHHHHHHHHHHHhccChHHHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhc
Q 017926 181 GQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (363)
Q Consensus 181 ~lL-~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~--G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~ 257 (363)
... ++.+..+|..+-.+|..+.+- |.++-.+.+. .....|.+-+++.+...+...+.+|+.|++.++.-...|+..
T Consensus 660 ~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k 738 (1176)
T KOG1248|consen 660 PEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK 738 (1176)
T ss_pred HHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 444 567999999999999999987 6666554433 345556666666666789999999999999887444555555
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 258 gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
...++|+.. +.. +.+.|+.|.-+|..|+
T Consensus 739 ~I~EvIL~~-Ke~--n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 739 LIPEVILSL-KEV--NVKARRNAFALLVFIG 766 (1176)
T ss_pred HHHHHHHhc-ccc--cHHHHhhHHHHHHHHH
Confidence 555666655 443 5677888888888887
No 165
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.13 E-value=4.1 Score=40.20 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCC--CchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-
Q 017926 128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN- 204 (363)
Q Consensus 128 ~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~i--DnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN- 204 (363)
++-..+++++..|.+.+ =+.++..|..+..|.+-. -..+.|++ .+..+++-+++....|-..||.+++.+.++
T Consensus 85 ~p~~al~~~l~~L~s~d--W~~~vdgLn~irrLs~fh~e~l~~~L~~--vii~vvkslKNlRS~VsraA~~t~~difs~l 160 (334)
T KOG2933|consen 85 DPEAALKQALKKLSSDD--WEDKVDGLNSIRRLSEFHPESLNPMLHE--VIIAVVKSLKNLRSAVSRAACMTLADIFSSL 160 (334)
T ss_pred cHHHHHHHHHHHhchHH--HHHHhhhHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 33456888999887653 478888888888776643 22333433 466677888899999999999999999995
Q ss_pred ChHHHHHHHHcCcHHHHH-HhhcCC---CHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 017926 205 NPLVQKQVLELGALSKLM-KMVKSS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 280 (363)
Q Consensus 205 Np~~Q~~~le~G~lp~Ll-~LL~s~---~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA 280 (363)
|..+++ .+..++ .|+... +.-++..|--||-+++.+-.++. .+..|+.++++. ..+++.++
T Consensus 161 n~~i~~------~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-------~L~~L~~~~~~~--n~r~r~~a 225 (334)
T KOG2933|consen 161 NNSIDQ------ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-------LLRKLIPILQHS--NPRVRAKA 225 (334)
T ss_pred HHHHHH------HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH-------HHHHHHHHHhhh--chhhhhhh
Confidence 444444 223333 344332 34578888888888987644422 344566666655 45677777
Q ss_pred HHHHHHHh
Q 017926 281 VSLVGDLA 288 (363)
Q Consensus 281 ~~lL~~L~ 288 (363)
+..+.+..
T Consensus 226 ~~~~~~~v 233 (334)
T KOG2933|consen 226 ALCFSRCV 233 (334)
T ss_pred hccccccc
Confidence 76555443
No 166
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=87.13 E-value=26 Score=34.44 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=92.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCC---CchhhHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhc--
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI---DNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQ-- 203 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~i---DnAn~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~~Lgt~aq-- 203 (363)
+++....+.++... + +++..|+..+.-++=++ +.+..+.+ ...|+|.+.+.. ..+.+|..++.+||-++-
T Consensus 86 tL~~~~~k~lkkg~-~-~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~ 162 (309)
T PF05004_consen 86 TLLDALLKSLKKGK-S-EEQALAARALALLALTLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVG 162 (309)
T ss_pred HHHHHHHHHhccCC-H-HHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhh
Confidence 45666666676544 3 66777777777776664 46677666 356677777764 356788888878877643
Q ss_pred -cChHHHHHHHHcCcHHHHHH--hhcC----------CCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCC
Q 017926 204 -NNPLVQKQVLELGALSKLMK--MVKS----------SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (363)
Q Consensus 204 -NNp~~Q~~~le~G~lp~Ll~--LL~s----------~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~ 270 (363)
+.+..-...+ ..+..+.. .++. ++..+...|+.+-+-|+..-++..-.-.-...++.|..+|.++
T Consensus 163 ~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~ 240 (309)
T PF05004_consen 163 GSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSD 240 (309)
T ss_pred cCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 3332222111 12221111 1221 1235788999999988877665321111134689999999987
Q ss_pred CccHHHHHHHHHHHHHHh
Q 017926 271 SFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 271 ~~~~klr~kA~~lL~~L~ 288 (363)
+..||.-|.-.|.=|.
T Consensus 241 --d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 241 --DVDVRIAAGEAIALLY 256 (309)
T ss_pred --CHHHHHHHHHHHHHHH
Confidence 6778888887776554
No 167
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=87.06 E-value=5.1 Score=42.57 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=87.4
Q ss_pred hcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhccChH---------
Q 017926 141 NNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQNNPL--------- 207 (363)
Q Consensus 141 ~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s----~~~~Ir~~Aa~~Lgt~aqNNp~--------- 207 (363)
.+...+..+....+-.+...+...+ ...+..+..++++ .++.++..|.-.+|+++...-.
T Consensus 405 ~~~~~~~~ea~~~l~~l~~~~~~Pt-------~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~ 477 (618)
T PF01347_consen 405 KSKKLTDDEAAQLLASLPFHVRRPT-------EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCD 477 (618)
T ss_dssp HTT-S-HHHHHHHHHHHHHT------------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT--------
T ss_pred HcCCCCHHHHHHHHHHHHhhcCCCC-------HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccccccc
Confidence 3445555555556666665552222 1123334445553 4677888888888887743111
Q ss_pred HHHHHHHcCcHHHHHHhhc----CCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCC-CccHHHHHHHHH
Q 017926 208 VQKQVLELGALSKLMKMVK----SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-SFEIRLHRKAVS 282 (363)
Q Consensus 208 ~Q~~~le~G~lp~Ll~LL~----s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~-~~~~klr~kA~~ 282 (363)
.....+....++.|.+.+. ..+...+..+|.||+|+ +++. .++.|..++.+. ..+..+|..|++
T Consensus 478 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g~~~---------~i~~l~~~i~~~~~~~~~~R~~Ai~ 546 (618)
T PF01347_consen 478 PCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--GHPE---------SIPVLLPYIEGKEEVPHFIRVAAIQ 546 (618)
T ss_dssp ---SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T-GG---------GHHHHHTTSTTSS-S-HHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--CCch---------hhHHHHhHhhhccccchHHHHHHHH
Confidence 1112233356777777776 23345678899999998 4443 455666666554 346678889999
Q ss_pred HHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC--ChhHHHHHHHHHH
Q 017926 283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKVFLEHV 332 (363)
Q Consensus 283 lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~lqE~al~aL~ 332 (363)
++..+... . ...+.+.+..++.+. +.++|-.|...|.
T Consensus 547 Alr~~~~~-----~--------~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 547 ALRRLAKH-----C--------PEKVREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp TTTTGGGT--------------HHHHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred HHHHHhhc-----C--------cHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 98877642 1 112335556665543 7888888887776
No 168
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.92 E-value=16 Score=40.69 Aligned_cols=189 Identities=17% Similarity=0.108 Sum_probs=104.7
Q ss_pred HHHHHHhhcCC-CCHHHHHHHHHHHHHcccCCCchhhHHhcCCHH------------HHHH-hcCC---CCHHHHHHHHH
Q 017926 134 QIAIDDLNNST-LSLEDSQRALQELLILVEPIDNANDLSKLGGLS------------VLVG-QLNH---PDTDIRKISAW 196 (363)
Q Consensus 134 k~al~~L~~~~-~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~------------~Li~-lL~s---~~~~Ir~~Aa~ 196 (363)
.+....+++.. .+...-+..|+...+.+++.|.=--+..+.|+. -+.+ +.+. ..++.|...-.
T Consensus 749 ~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~~d~~lkVGE 828 (982)
T KOG4653|consen 749 QMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQTDYRLKVGE 828 (982)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCCccceehHHH
Confidence 33444444332 234445566777777777776543333334333 3333 2221 12456666668
Q ss_pred HHHHHhc-cChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCccc-HHHHHhcCcHHHHHHhhcCCCccH
Q 017926 197 ILGKASQ-NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFYVEAGDLMLQDILGNSSFEI 274 (363)
Q Consensus 197 ~Lgt~aq-NNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a-~~~f~~~gG~~~L~~lL~s~~~~~ 274 (363)
+|+..+| -++-++.+.- -.+...++.+.+++...|..++.+++.+++-..-. .+.|. .-+..++.+.+.+. ..
T Consensus 829 ai~k~~qa~Gel~~~y~~--~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~--ev~~~Il~l~~~d~-s~ 903 (982)
T KOG4653|consen 829 AILKVAQALGELVFKYKA--VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH--EVLQLILSLETTDG-SV 903 (982)
T ss_pred HHHHHHHHhccHHHHHHH--HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHccCC-ch
Confidence 8888887 3555555432 45566777777666677999999999888743322 22222 23445555555553 57
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCcchhHH--hCCcHHHHHHhccCC-ChhHHHHHHHHH
Q 017926 275 RLHRKAVSLVGDLAKCQLENMHKVEPPLFR--DRFFLKSVVDLTASA-DLDLQEKVFLEH 331 (363)
Q Consensus 275 klr~kA~~lL~~L~~~~~~~~~~~~~~~l~--~~g~v~~Lv~lL~~~-d~~lqE~al~aL 331 (363)
-+|+.|+.++..+... ...+..+.+. -....+.+....+.. |..++-++-.|+
T Consensus 904 ~vRRaAv~li~~lL~~----tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 904 LVRRAAVHLLAELLNG----TGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred hhHHHHHHHHHHHHhc----cchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 7999999999999852 2333333332 223334444444544 444555554443
No 169
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.77 E-value=17 Score=37.98 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=73.7
Q ss_pred hhHHhcCCHHHHHHhc----CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHH-HhhcCCCHHHHHHHHHHHHH
Q 017926 168 NDLSKLGGLSVLVGQL----NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSS 242 (363)
Q Consensus 168 n~l~~lGgl~~Li~lL----~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll-~LL~s~~~~v~~kAL~ALSs 242 (363)
+.+-+.|.+.-++..| .+++..+|..|+.+||+.+..-|.--..-.. -.+..++ .|.+..+.+|.-.++.+|-.
T Consensus 248 ~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~ 326 (533)
T KOG2032|consen 248 KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTM 326 (533)
T ss_pred ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3344677777665544 3578899999999999999885532222111 2233333 44455556776666666655
Q ss_pred HhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 243 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 243 LiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
++.--..-.-.++=.+..-.+..++.+. +.++|..|.+++..|+..
T Consensus 327 v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 327 VLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGALAKL 372 (533)
T ss_pred HHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHHHHHH
Confidence 5432111122333345556677777776 557899999999999864
No 170
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=86.60 E-value=6.8 Score=34.07 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHH
Q 017926 234 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313 (363)
Q Consensus 234 ~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv 313 (363)
-..+-.|+-+|+..+.+. ..++..|..-|+++ +..++..|+.++-.+.. |....+...+.+.+++..|+
T Consensus 19 w~~ileicD~In~~~~~~-----k~a~rai~krl~~~--n~~v~l~AL~LLe~~vk----NCG~~fh~evas~~Fl~el~ 87 (139)
T cd03567 19 WEAIQAFCEQINKEPEGP-----QLAVRLLAHKIQSP--QEKEALQALTVLEACMK----NCGERFHSEVGKFRFLNELI 87 (139)
T ss_pred HHHHHHHHHHHHcCCccH-----HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HcCHHHHHHHHhHHHHHHHH
Confidence 345666777776654332 23566777778877 56789999999999987 46778888888999999999
Q ss_pred HhccC------CChhHHHHHHHHHHhhcccccCch
Q 017926 314 DLTAS------ADLDLQEKVFLEHVFCGLVFCTCP 342 (363)
Q Consensus 314 ~lL~~------~d~~lqE~al~aL~~~~~~~~~~~ 342 (363)
.++.. .+..++++++..+..++.-.+.+|
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p 122 (139)
T cd03567 88 KLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEP 122 (139)
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 99963 478999999999987765444333
No 171
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=86.22 E-value=43 Score=36.02 Aligned_cols=193 Identities=11% Similarity=0.041 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcC-C--HHHHHHhcC-CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHH
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLG-G--LSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 221 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lG-g--l~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~L 221 (363)
...-|..++..+.+.++..+. .++..+- . +.++..-++ .++..+|-.|..+|..-. ..+|..|-.++-...+
T Consensus 147 p~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl---~fv~~nf~~E~erNy~ 222 (858)
T COG5215 147 PVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL---MFVQGNFCYEEERNYF 222 (858)
T ss_pred chHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH---HHHHHhhcchhhhchh
Confidence 345688999999999999886 4555432 2 223333444 467889999999887632 2345545444333333
Q ss_pred H----HhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc-HHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhh---
Q 017926 222 M----KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG-DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE--- 293 (363)
Q Consensus 222 l----~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG-~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~--- 293 (363)
+ ..-+.++.+++.+|..++.-|..=+-.-.+ ++-.+. .......+++. +.++...|+-.-+.+|.+.-+
T Consensus 223 mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~-~ymE~aL~alt~~~mks~--nd~va~qavEfWsticeEeid~~~ 299 (858)
T COG5215 223 MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQ-SYMENALAALTGRFMKSQ--NDEVAIQAVEFWSTICEEEIDGEM 299 (858)
T ss_pred heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHHhhhHH
Confidence 3 344456678999999999887754433334 443444 45667778887 567888888888888875310
Q ss_pred --cCCCCcc------hhHHhCCcHHHHHHhccC-------CChhHHHHHHHHHHhhcccccCchhhhhHH
Q 017926 294 --NMHKVEP------PLFRDRFFLKSVVDLTAS-------ADLDLQEKVFLEHVFCGLVFCTCPCIVRGA 348 (363)
Q Consensus 294 --~~~~~~~------~~l~~~g~v~~Lv~lL~~-------~d~~lqE~al~aL~~~~~~~~~~~~~~r~~ 348 (363)
..-++.. ..-.-..++|-|.++|.. +|.+....|..||- +.+..|+++.-..
T Consensus 300 e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLq---lfaq~~gd~i~~p 366 (858)
T COG5215 300 EDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQ---LFAQLKGDKIMRP 366 (858)
T ss_pred HHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHH---HHHHHhhhHhHHH
Confidence 0001100 011112467888888875 24566677777777 6777788765544
No 172
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=86.06 E-value=2.4 Score=44.21 Aligned_cols=173 Identities=14% Similarity=0.127 Sum_probs=101.3
Q ss_pred HHHHHHHHHHcccCCCchhhHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc----c--ChHHHHHHHHcCcHHHHH
Q 017926 150 SQRALQELLILVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQ----N--NPLVQKQVLELGALSKLM 222 (363)
Q Consensus 150 k~~AL~~L~~Lve~iDnAn~l~-~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aq----N--Np~~Q~~~le~G~lp~Ll 222 (363)
+..|+..+.-+|-..-.+.+.. -......++..|.+..-..|+.|+|.+|++.. | ||.+|..=...-.+..++
T Consensus 408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~ 487 (728)
T KOG4535|consen 408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKML 487 (728)
T ss_pred HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 4556666666665555444433 23455666677777788899999999999874 3 444444433333455666
Q ss_pred HhhcCC---CHHHHHHHHHHHHHHhcCCc----ccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcC
Q 017926 223 KMVKSS---FVEEAVKALYTVSSLIRNNL----AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (363)
Q Consensus 223 ~LL~s~---~~~v~~kAL~ALSsLiR~~~----~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~ 295 (363)
+..... ...|+.+|+.||+++..--. .+..... .+....+...--.+ ...++|-+++++++||..+
T Consensus 488 ~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~-~~~~~~l~~~v~~~-~~~kV~WNaCya~gNLfkn----- 560 (728)
T KOG4535|consen 488 RSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEII-EESIQALISTVLTE-AAMKVRWNACYAMGNLFKN----- 560 (728)
T ss_pred HHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHH-HHHHHhcccceecc-cccccchHHHHHHHHhhcC-----
Confidence 655432 34678889999988764211 1111111 12222222222122 2567999999999999963
Q ss_pred CCCcchhHHhCCcH----HHHHHhccC-CChhHHHHHHHHHH
Q 017926 296 HKVEPPLFRDRFFL----KSVVDLTAS-ADLDLQEKVFLEHV 332 (363)
Q Consensus 296 ~~~~~~~l~~~g~v----~~Lv~lL~~-~d~~lqE~al~aL~ 332 (363)
+.. .+.+..+. +.|..++.. .+-.+|..|+.+|.
T Consensus 561 -~a~--~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 561 -PAL--PLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALS 599 (728)
T ss_pred -ccc--cccCCCchHHHHHHHHHHHHHhccceEeehhhhhhc
Confidence 222 12333333 445555554 37788888998877
No 173
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.04 E-value=31 Score=38.25 Aligned_cols=163 Identities=13% Similarity=0.139 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcC
Q 017926 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 227 (363)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s 227 (363)
-.|.+|+..+.-++-.-+++.+ -+|.+++...+.+.+||...---|-.-|.++|... .=-|..+=+-|++
T Consensus 50 ~~KleAmKRIia~iA~G~dvS~-----~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA-----LLSIntfQk~L~D 119 (968)
T KOG1060|consen 50 SLKLEAMKRIIALIAKGKDVSL-----LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA-----LLSINTFQKALKD 119 (968)
T ss_pred HHHHHHHHHHHHHHhcCCcHHH-----HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce-----eeeHHHHHhhhcC
Confidence 3455666665555555444443 36778888888888888887766666666655321 1125566677888
Q ss_pred CCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCC
Q 017926 228 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 307 (363)
Q Consensus 228 ~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g 307 (363)
+++.+|.-||.++|+| |= +...-+ .+-.+.++..+. ...+|+.|+.+|--|-+ .+++....+
T Consensus 120 pN~LiRasALRvlSsI-Rv--p~IaPI----~llAIk~~~~D~--s~yVRk~AA~AIpKLYs-----Ld~e~k~qL---- 181 (968)
T KOG1060|consen 120 PNQLIRASALRVLSSI-RV--PMIAPI----MLLAIKKAVTDP--SPYVRKTAAHAIPKLYS-----LDPEQKDQL---- 181 (968)
T ss_pred CcHHHHHHHHHHHHhc-ch--hhHHHH----HHHHHHHHhcCC--cHHHHHHHHHhhHHHhc-----CChhhHHHH----
Confidence 8888899999999997 31 211111 123444555554 67899999999998875 344444433
Q ss_pred cHHHHHHhccCCChhHHHHHHHHHHhhcccccCchhhh
Q 017926 308 FLKSVVDLTASADLDLQEKVFLEHVFCGLVFCTCPCIV 345 (363)
Q Consensus 308 ~v~~Lv~lL~~~d~~lqE~al~aL~~~~~~~~~~~~~~ 345 (363)
+..+-.+|...++-+.-.|+.|.. ..||+.+
T Consensus 182 -~e~I~~LLaD~splVvgsAv~AF~------evCPerl 212 (968)
T KOG1060|consen 182 -EEVIKKLLADRSPLVVGSAVMAFE------EVCPERL 212 (968)
T ss_pred -HHHHHHHhcCCCCcchhHHHHHHH------HhchhHH
Confidence 334455566667777766666644 6688743
No 174
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=85.59 E-value=14 Score=39.95 Aligned_cols=162 Identities=19% Similarity=0.192 Sum_probs=90.8
Q ss_pred HHHHHHHHHcCCCC--HHHHHH--HHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhc----CCHHHHHHhcCCC
Q 017926 115 MEIKELMEKLKTPS--DAQLIQ--IAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL----GGLSVLVGQLNHP 186 (363)
Q Consensus 115 ~~Lkeal~~l~~~~--d~~lmk--~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~l----Ggl~~Li~lL~s~ 186 (363)
..+++++..++.-+ ..+... ++++++-+ .+++.+--|||.|..++-+.-....|+.. ..+..++..++ .
T Consensus 524 ~~~eeil~li~~s~~~~~e~~~~l~~l~~l~~--wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~ 600 (745)
T KOG0301|consen 524 NGLEEILSLIKNSSHYSSEVLQSLLALAILLQ--WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-A 600 (745)
T ss_pred hhHHHHHHhhcCCCCccchhHHHHHHHHHHhc--CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-c
Confidence 35566666654312 112222 45555543 36788899999999999887666666652 23344555555 5
Q ss_pred CHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcC----CCHHHH-HHH--HHHHHH-HhcCCcccHHHHHhcC
Q 017926 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS----SFVEEA-VKA--LYTVSS-LIRNNLAGQEMFYVEA 258 (363)
Q Consensus 187 ~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s----~~~~v~-~kA--L~ALSs-LiR~~~~a~~~f~~~g 258 (363)
++..+..+++||+++..| |..++.+... +..++..+.. ++..++ .-| +...|- ++..+. +.+
T Consensus 601 ~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~-------~~~ 670 (745)
T KOG0301|consen 601 DPANQLLVVRCLANLFSN-PAGRELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE-------QLE 670 (745)
T ss_pred chhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc-------ccc
Confidence 688899999999999976 8888877655 3333333221 122221 111 112332 222221 267
Q ss_pred cHHHHHHhhcC---CCccHHHHHHHHHHHHHHhh
Q 017926 259 GDLMLQDILGN---SSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 259 G~~~L~~lL~s---~~~~~klr~kA~~lL~~L~~ 289 (363)
|.+.+..++.. +..+..-.-+.+-+|.+|+.
T Consensus 671 ~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 671 GKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred hHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 77766666542 21233234456667777774
No 175
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.13 E-value=5.7 Score=45.29 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=94.6
Q ss_pred cCCHHHHH-HhcC----CCCHHHHHHHHHHHHHHhc-cChHHHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhc
Q 017926 173 LGGLSVLV-GQLN----HPDTDIRKISAWILGKASQ-NNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIR 245 (363)
Q Consensus 173 lGgl~~Li-~lL~----s~~~~Ir~~Aa~~Lgt~aq-NNp~~Q~~~le~G~lp~Ll~LL~-s~~~~v~~kAL~ALSsLiR 245 (363)
+|-+.|++ ...+ .++|++|..|.-++|.+.- .+..| + --+|.|+.++. ++++-+|..++-|+|-+.-
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----e-s~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----E-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----H-HHHHHHHHHHhcCCCceeeecchheccchhh
Confidence 45566665 5553 3689999999999999874 22222 2 24899999998 4556678899999998766
Q ss_pred CCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHH
Q 017926 246 NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQE 325 (363)
Q Consensus 246 ~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE 325 (363)
-+|.-.+.+- +.|-.-|++. +..+|+.|...+++|.. ...++-.|.+..++-+|..++..+.+
T Consensus 991 ~fpnlie~~T-----~~Ly~rL~D~--~~~vRkta~lvlshLIL----------ndmiKVKGql~eMA~cl~D~~~~Isd 1053 (1251)
T KOG0414|consen 991 RFPNLIEPWT-----EHLYRRLRDE--SPSVRKTALLVLSHLIL----------NDMIKVKGQLSEMALCLEDPNAEISD 1053 (1251)
T ss_pred hcccccchhh-----HHHHHHhcCc--cHHHHHHHHHHHHHHHH----------hhhhHhcccHHHHHHHhcCCcHHHHH
Confidence 6665443332 2344445665 56689999999999985 23556678999999999888888877
Q ss_pred HHH
Q 017926 326 KVF 328 (363)
Q Consensus 326 ~al 328 (363)
.|-
T Consensus 1054 lAk 1056 (1251)
T KOG0414|consen 1054 LAK 1056 (1251)
T ss_pred HHH
Confidence 665
No 176
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=84.97 E-value=14 Score=32.83 Aligned_cols=108 Identities=14% Similarity=0.075 Sum_probs=74.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc--CcHHHHHHhhcCCCH-HHHHHHHHHHHH---HhcCCcc
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFV-EEAVKALYTVSS---LIRNNLA 249 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~--G~lp~Ll~LL~s~~~-~v~~kAL~ALSs---LiR~~~~ 249 (363)
+.-+..+|++.++.-|+.++..++..+++++ .+.+.++ -.+..|+++|+.+++ .+..-++.+++. .++++|.
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4456689999999999999999999999874 2444444 468889999998653 455555555554 5667777
Q ss_pred cHHHHHhcCc---HHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 250 GQEMFYVEAG---DLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 250 a~~~f~~~gG---~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
-.+++..-.. ++.++.+++. ......++.++..+..
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD----SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHH
Confidence 6667665443 3444444443 2356678888888875
No 177
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=84.95 E-value=8 Score=42.95 Aligned_cols=133 Identities=19% Similarity=0.239 Sum_probs=89.8
Q ss_pred hhhHHhcCCHHHHHHhcCC-----CCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhc----CCC----HHHH
Q 017926 167 ANDLSKLGGLSVLVGQLNH-----PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK----SSF----VEEA 233 (363)
Q Consensus 167 An~l~~lGgl~~Li~lL~s-----~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~----s~~----~~v~ 233 (363)
++.+.+.||+..++.+|.+ ...++-.....++..+++ -+.+++++++.|+++.|++.|. ... ..+.
T Consensus 110 ~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~ 188 (802)
T PF13764_consen 110 ASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA 188 (802)
T ss_pred HHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence 5667779999999999875 234566777888888886 4889999999999999998885 322 3555
Q ss_pred HHHHHHHHHHhcCCc----ccHHHHHhcCc--------HHHHHHhhcCC--CccHHHHHHHHHHHHHHhhhhhhcCCCCc
Q 017926 234 VKALYTVSSLIRNNL----AGQEMFYVEAG--------DLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVE 299 (363)
Q Consensus 234 ~kAL~ALSsLiR~~~----~a~~~f~~~gG--------~~~L~~lL~s~--~~~~klr~kA~~lL~~L~~~~~~~~~~~~ 299 (363)
.+.+.-+-.++..-. .....+....| +.++...+.++ ..+.++..-.+.+|-.|+. ++++.
T Consensus 189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~-----G~~e~ 263 (802)
T PF13764_consen 189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTY-----GNEEK 263 (802)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhc-----CCHHH
Confidence 666666655554311 11122233344 77788877765 2356777778888888885 45554
Q ss_pred chhHHh
Q 017926 300 PPLFRD 305 (363)
Q Consensus 300 ~~~l~~ 305 (363)
.+.+++
T Consensus 264 m~~Lv~ 269 (802)
T PF13764_consen 264 MDALVE 269 (802)
T ss_pred HHHHHH
Confidence 455444
No 178
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.69 E-value=12 Score=40.52 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=106.7
Q ss_pred HHHHHHHHHHcccCCC-chhhHHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHH--HcCcHHHHHHhh
Q 017926 150 SQRALQELLILVEPID-NANDLSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL--ELGALSKLMKMV 225 (363)
Q Consensus 150 k~~AL~~L~~Lve~iD-nAn~l~~-lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~l--e~G~lp~Ll~LL 225 (363)
.+.+||-+.-|++.+. ....+.. .|....++.|+..+-++||..|.-.||.++.-. -+.+. -...+|.|..-+
T Consensus 636 iI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c---~~~v~p~~~~fl~~lg~Nl 712 (885)
T KOG2023|consen 636 IIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKAC---FEHVIPNLADFLPILGANL 712 (885)
T ss_pred EEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHH---HHhccchHHHHHHHHhhcC
Confidence 3556776666766652 3444543 345556678999999999999999999998653 22221 124555555555
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
..+..++...|+|||+-|+-......+.++. ..+.-|..+++.++++..+-.+.+-.|..|... ..+...+.+
T Consensus 713 ~~~~isv~nNA~WAiGeia~k~g~~~~~~v~-~vl~~L~~iin~~~~~~tllENtAITIGrLg~~----~Pe~vAp~l-- 785 (885)
T KOG2023|consen 713 NPENISVCNNAIWAIGEIALKMGLKMKQYVS-PVLEDLITIINRQNTPKTLLENTAITIGRLGYI----CPEEVAPHL-- 785 (885)
T ss_pred ChhhchHHHHHHHHHHHHHHHhchhhhhHHH-HHHHHHHHHhcccCchHHHHHhhhhhhhhhhcc----CHHhcchhH--
Confidence 5556678889999999887654443343332 345666777777777777888888888888642 111222221
Q ss_pred CCcHHHHHHhccC-CChhHHHHHHHH
Q 017926 306 RFFLKSVVDLTAS-ADLDLQEKVFLE 330 (363)
Q Consensus 306 ~g~v~~Lv~lL~~-~d~~lqE~al~a 330 (363)
..+++.-...|+. +|.+-++.|-+.
T Consensus 786 ~~f~~pWc~sl~~i~DneEK~sAFrG 811 (885)
T KOG2023|consen 786 DSFMRPWCTSLRNIDDNEEKESAFRG 811 (885)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHH
Confidence 2344455555554 355666666655
No 179
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=84.54 E-value=22 Score=41.03 Aligned_cols=181 Identities=16% Similarity=0.117 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcc----ChHHHHHHHHcCcHHHHH
Q 017926 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN----NPLVQKQVLELGALSKLM 222 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN----Np~~Q~~~le~G~lp~Ll 222 (363)
.+-|..||+-|..|...+|--..+.. .+|.++.|+..+...||..|...|+.+..+ +|.-...|.++ .+|.|-
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDR--VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~ 513 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDR--VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLN 513 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhh--hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhH
Confidence 46788898888888888876666665 489999999999999999999998877654 23233333343 688888
Q ss_pred HhhcCCCH-HHHHHHHHHHHHH-------------hc-----CCcccH---H-----HHHh-cCcHH-HHHHhhcCCCcc
Q 017926 223 KMVKSSFV-EEAVKALYTVSSL-------------IR-----NNLAGQ---E-----MFYV-EAGDL-MLQDILGNSSFE 273 (363)
Q Consensus 223 ~LL~s~~~-~v~~kAL~ALSsL-------------iR-----~~~~a~---~-----~f~~-~gG~~-~L~~lL~s~~~~ 273 (363)
.|+.+.+. -+|..-...|+-+ +| |.+... . ...+ ..+++ ....+|.++ +
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~--~ 591 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDS--P 591 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCC--c
Confidence 88887432 2332111111111 11 222220 0 0001 12443 334444444 3
Q ss_pred HHHHHHHHHHHHHHhhhhh-hcCC---------------CCcchhH---------------HhCCcHHHHHHhccCCChh
Q 017926 274 IRLHRKAVSLVGDLAKCQL-ENMH---------------KVEPPLF---------------RDRFFLKSVVDLTASADLD 322 (363)
Q Consensus 274 ~klr~kA~~lL~~L~~~~~-~~~~---------------~~~~~~l---------------~~~g~v~~Lv~lL~~~d~~ 322 (363)
..+|+--+--|.-||...+ +..+ ...+..| +++.++|.|.+-|..+..-
T Consensus 592 ~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~ 671 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEA 671 (1431)
T ss_pred hHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchh
Confidence 4466655555555654321 1111 1111111 3567788888888888899
Q ss_pred HHHHHHHHHH
Q 017926 323 LQEKVFLEHV 332 (363)
Q Consensus 323 lqE~al~aL~ 332 (363)
+.++|++++.
T Consensus 672 Viv~aL~~ls 681 (1431)
T KOG1240|consen 672 VIVSALGSLS 681 (1431)
T ss_pred hHHHHHHHHH
Confidence 9999999976
No 180
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=84.44 E-value=57 Score=38.66 Aligned_cols=145 Identities=12% Similarity=0.152 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHhhcCC---------CCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHH
Q 017926 128 SDAQLIQIAIDDLNNST---------LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWIL 198 (363)
Q Consensus 128 ~d~~lmk~al~~L~~~~---------~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~L 198 (363)
..-..||-.+..+.+.+ .+.-+.-.|.....++...-...+.|.. -+..++..|..+...+|..|..||
T Consensus 763 ~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~--yLk~Il~~l~e~~ialRtkAlKcl 840 (1692)
T KOG1020|consen 763 TVENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDP--YLKLILSVLGENAIALRTKALKCL 840 (1692)
T ss_pred hhHHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHH--HHHHHHHHhcCchHHHHHHHHHHH
Confidence 33455666666655442 1112233444444445444444554443 256677888989999999999999
Q ss_pred HHHhcc------ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCc
Q 017926 199 GKASQN------NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF 272 (363)
Q Consensus 199 gt~aqN------Np~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~ 272 (363)
+.++.- +|.+|..+. .=+.+++..||..|+--+|-.|-.++....++++ .|..-+.++
T Consensus 841 S~ive~Dp~vL~~~dvq~~Vh---------~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~-----~i~erIlDt-- 904 (1692)
T KOG1020|consen 841 SMIVEADPSVLSRPDVQEAVH---------GRLNDSSASVREAALDLVGRFVLSIPELIFQYYD-----QIIERILDT-- 904 (1692)
T ss_pred HHHHhcChHhhcCHHHHHHHH---------HhhccchhHHHHHHHHHHhhhhhccHHHHHHHHH-----HHHhhcCCC--
Confidence 999976 455555543 2334456789999999999888877877777764 455545554
Q ss_pred cHHHHHHHHHHHHHHhhh
Q 017926 273 EIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 273 ~~klr~kA~~lL~~L~~~ 290 (363)
.+.||.++...+.++|.+
T Consensus 905 gvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 905 GVSVRKRVIKILRDICEE 922 (1692)
T ss_pred chhHHHHHHHHHHHHHHh
Confidence 567999999999999974
No 181
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=84.34 E-value=19 Score=39.23 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=97.4
Q ss_pred cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCcccH
Q 017926 173 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQ 251 (363)
Q Consensus 173 lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~~~a~ 251 (363)
-..+|.|...+++.+..++..+..++.+++.-=+ ..+++.-.+|.|-.+... .+..++..++-|+..++ ..+
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~----q~l 460 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI----QRL 460 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH----HHH
Confidence 3467778888899999999999999999986322 445666778988887554 34678999999999998 345
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHH
Q 017926 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQ 324 (363)
Q Consensus 252 ~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lq 324 (363)
+.+.-..-+..+..+.+.. +..+......+...+..- ...- ..+.-+.++|.++-+...+...+.
T Consensus 461 D~~~v~d~~lpi~~~~~~~--dp~iv~~~~~i~~~l~~~-----~~~g-~ev~~~~VlPlli~ls~~~~L~~~ 525 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTR--DPAIVMGFLRIYEALALI-----IYSG-VEVMAENVLPLLIPLSVAPSLNGE 525 (700)
T ss_pred HHHHhHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHhh-----cccc-eeeehhhhhhhhhhhhhcccccHH
Confidence 5555556667777777766 455677777777777642 1111 344557888988888777644333
No 182
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=84.25 E-value=31 Score=37.16 Aligned_cols=107 Identities=22% Similarity=0.171 Sum_probs=72.8
Q ss_pred hhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 017926 168 NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 247 (363)
Q Consensus 168 n~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~ 247 (363)
.+|+. |-+..+++.+.+++..||..++.+|+-+..+--++- ..+-.|.+..|.+=+-...+.||..|+.+|+-.=. .
T Consensus 86 ~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eID-e~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe-~ 162 (885)
T COG5218 86 EELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREID-EVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE-M 162 (885)
T ss_pred hHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh-c
Confidence 34442 567778888899999999999999999886543333 34555778888776666677899999999987632 2
Q ss_pred cccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 017926 248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (363)
Q Consensus 248 ~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~ 282 (363)
..+.+-++ ...|+.+++.+. +..+|+-|+.
T Consensus 163 ~~neen~~----~n~l~~~vqnDP-S~EVRr~all 192 (885)
T COG5218 163 ELNEENRI----VNLLKDIVQNDP-SDEVRRLALL 192 (885)
T ss_pred cCChHHHH----HHHHHHHHhcCc-HHHHHHHHHH
Confidence 22222222 347777777764 4457765543
No 183
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=84.01 E-value=59 Score=34.02 Aligned_cols=183 Identities=16% Similarity=0.119 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-cccCCCchhh--HHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhccC
Q 017926 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLI-LVEPIDNAND--LSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNN 205 (363)
Q Consensus 130 ~~lmk~al~~L~~~~~s~e~k~~AL~~L~~-Lve~iDnAn~--l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~~Lgt~aqNN 205 (363)
..++++.++.+.+.+ ..+.+..|+.+|-. ++++--.-.+ |.+ .+..+++.|.. .+..+|+.|.++|+.++.|-
T Consensus 285 ~~~v~~~l~~~~g~e-~a~~~k~alsel~~m~~e~sfsvWeq~f~~--iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q 361 (516)
T KOG2956|consen 285 SALVADLLKEISGSE-RASERKEALSELPKMLCEGSFSVWEQHFAE--ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ 361 (516)
T ss_pred hHHHHHHHHhccCcc-chhHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHHHHHHccchhhHHHHHHHHHHHHHHHhc
Confidence 467788888887764 34667777776655 4444322122 222 24456677755 88999999999999999875
Q ss_pred hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 017926 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (363)
Q Consensus 206 p~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~ 285 (363)
|.--..-. +=++.++++--++..+++-.-|.-+.+-++..+.|-+. +..+..++... |...-.-++..+.
T Consensus 362 ~~~l~Dst-E~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~--D~~~~~~~iKm~T 431 (516)
T KOG2956|consen 362 PARLFDST-EIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTA--DEPRAVAVIKMLT 431 (516)
T ss_pred hHhhhchH-HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcC--cchHHHHHHHHHH
Confidence 53221111 13566666766676666655555555555544444332 23344444443 2222222333444
Q ss_pred HHhhhhhhcCCCCcchhHH--hCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 286 DLAKCQLENMHKVEPPLFR--DRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 286 ~L~~~~~~~~~~~~~~~l~--~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
-|+.. .. .+.+. -..+.|.+++--.+....+|..+.-||+
T Consensus 432 kl~e~----l~---~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 432 KLFER----LS---AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLV 473 (516)
T ss_pred HHHhh----cC---HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHH
Confidence 44421 11 12221 1357777788888888999998888877
No 184
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.96 E-value=5 Score=43.65 Aligned_cols=122 Identities=21% Similarity=0.197 Sum_probs=87.0
Q ss_pred HHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCC
Q 017926 150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF 229 (363)
Q Consensus 150 k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~ 229 (363)
--.||.-|..++ -.|.|+|+. +-++.+|+++.+-+|..|.-++=.+.---|+.-. -.+|+|..-|.+++
T Consensus 126 ~giAL~GLS~fv-TpdLARDLa-----~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpD 194 (877)
T KOG1059|consen 126 VGLALSGLSCIV-TPDLARDLA-----DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPD 194 (877)
T ss_pred hhheeccccccc-CchhhHHHH-----HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCC
Confidence 344555555443 346777765 3567889999999999999998877654443322 46899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 230 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 230 ~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
+.|+..|+..||-+.|.+|.+.-.+ -+.+..+|.+.. +.=+-.|..-++.+|+
T Consensus 195 p~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSs-NNWmLIKiiKLF~aLt 247 (877)
T KOG1059|consen 195 PSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSS-NNWVLIKLLKLFAALT 247 (877)
T ss_pred chHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccC-CCeehHHHHHHHhhcc
Confidence 9999999999999999999765332 244555554432 3345567777777776
No 185
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.65 E-value=22 Score=35.32 Aligned_cols=98 Identities=27% Similarity=0.172 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHh--cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHH
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK 223 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~--lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~ 223 (363)
++..+..|.+++.-|.-. .-..|.+ --.++.+.++++...+ -..|+.++.+++| ++..++.++.. .+..++.
T Consensus 16 sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~~-~~k~l~~ 89 (353)
T KOG2973|consen 16 SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQD-LLKVLMD 89 (353)
T ss_pred ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHHH-HHHHHHH
Confidence 456677777777766554 1222222 1245566777776655 6789999999999 47788888887 8888889
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCCcc
Q 017926 224 MVKSSFVEEAVKALYTVSSLIRNNLA 249 (363)
Q Consensus 224 LL~s~~~~v~~kAL~ALSsLiR~~~~ 249 (363)
++.++......-..-.|||+.|....
T Consensus 90 ~~~~p~~~lad~~cmlL~NLs~~~~~ 115 (353)
T KOG2973|consen 90 MLTDPQSPLADLICMLLSNLSRDDDE 115 (353)
T ss_pred HhcCcccchHHHHHHHHHHhccCchH
Confidence 99887666777777888899887444
No 186
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=83.40 E-value=20 Score=37.83 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=68.1
Q ss_pred CHHHHHHhcC----CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhc-CC--CHHHHHHHHHHHHHHhcCC
Q 017926 175 GLSVLVGQLN----HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SS--FVEEAVKALYTVSSLIRNN 247 (363)
Q Consensus 175 gl~~Li~lL~----s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~-s~--~~~v~~kAL~ALSsLiR~~ 247 (363)
-++.+...|. ..+.+-+..+..+||++.. | ..++.|..++. +. +..+|..|++||..+...+
T Consensus 443 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--~---------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~ 511 (574)
T smart00638 443 LLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH--P---------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD 511 (574)
T ss_pred HHHHHHHHHHHHHhcCCchheeeHHHhhhccCC--h---------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 3444544442 2455556677777776653 2 23555666665 22 3568999999999887655
Q ss_pred cccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHH
Q 017926 248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQ 324 (363)
Q Consensus 248 ~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lq 324 (363)
|. -.-+.+..++.+...+..+|.-|..++-.- +|. ..++..++..+..+ +..+.
T Consensus 512 p~--------~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t--------~P~-------~~~l~~ia~~l~~E~~~QV~ 566 (574)
T smart00638 512 PR--------KVQEVLLPIYLNRAEPPEVRMAAVLVLMET--------KPS-------VALLQRIAELLNKEPNLQVA 566 (574)
T ss_pred ch--------HHHHHHHHHHcCCCCChHHHHHHHHHHHhc--------CCC-------HHHHHHHHHHHhhcCcHHHH
Confidence 54 234567777776655666777666554322 222 34566777777664 34443
No 187
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=82.72 E-value=2 Score=42.71 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=65.3
Q ss_pred CchhhHHhc--CCHHHHHHhcCCCCHH-HHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 017926 165 DNANDLSKL--GGLSVLVGQLNHPDTD-IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVS 241 (363)
Q Consensus 165 DnAn~l~~l--Ggl~~Li~lL~s~~~~-Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALS 241 (363)
+|+..|.+- .-+..|..+|++.++. .-.-||.=|+..+..-|+....+.++|+=..++.|++++++.++-.|+.|+-
T Consensus 345 ~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q 424 (432)
T COG5231 345 TNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQ 424 (432)
T ss_pred hhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHH
Confidence 344444432 3566778888876655 6678999999999999999999999999999999999999999988888877
Q ss_pred HHhc
Q 017926 242 SLIR 245 (363)
Q Consensus 242 sLiR 245 (363)
.++.
T Consensus 425 ~~i~ 428 (432)
T COG5231 425 TCIS 428 (432)
T ss_pred HHHh
Confidence 6654
No 188
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=82.70 E-value=22 Score=39.85 Aligned_cols=209 Identities=12% Similarity=0.103 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccc----CCCchhh--HHh----cCCHHHHHHh
Q 017926 113 RQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVE----PIDNAND--LSK----LGGLSVLVGQ 182 (363)
Q Consensus 113 r~~~Lkeal~~l~~~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve----~iDnAn~--l~~----lGgl~~Li~l 182 (363)
=..|+-+++=.=+-|...++-++.++.|.+++.- .--..+|+.+-.=+. -...|.. +.+ ..-+|.+++.
T Consensus 797 ~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g-~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~ 875 (1030)
T KOG1967|consen 797 VLAWVTKALLLRNHPESSEIAEKLLDLLSGPSTG-SPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSK 875 (1030)
T ss_pred HHHHHHHHHHHcCCcccchHHHHHHHhcCCcccc-chHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHH
Confidence 3556644432223444456667777777765531 111122222211111 1112222 333 2356777777
Q ss_pred cCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc-H
Q 017926 183 LNHPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG-D 260 (363)
Q Consensus 183 L~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~-G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG-~ 260 (363)
..+....+|..-...|+++-.|-|+ |...=+. ..+|.|++-|+-++..+|..++..|.-++..++.-+..-. +- +
T Consensus 876 ~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~--~Tlv 952 (1030)
T KOG1967|consen 876 FETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL--STLV 952 (1030)
T ss_pred hccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH--hHHH
Confidence 7777788899999999999988887 3322222 6789999999988888999999999988877665443322 22 3
Q ss_pred HHHHHhhcCCCc-cHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHH
Q 017926 261 LMLQDILGNSSF-EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLE 330 (363)
Q Consensus 261 ~~L~~lL~s~~~-~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~a 330 (363)
+.+..+=++.+. ..-+|.-|...+..|..- -|...=.-....++..|...|....--+|+.|.++
T Consensus 953 p~lLsls~~~~n~~~~VR~~ALqcL~aL~~~-----~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 953 PYLLSLSSDNDNNMMVVREDALQCLNALTRR-----LPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHHhcCCCCCcchhHHHHHHHHHHHHHhcc-----CCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 444444333321 367899999999999852 22222222345678888888887767777777665
No 189
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=82.69 E-value=10 Score=31.13 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhh
Q 017926 189 DIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 267 (363)
Q Consensus 189 ~Ir~~Aa~~Lgt~aqNNp~~Q~~~l-e~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL 267 (363)
+||.+|..-|-+=-.++=-+...+. +.+.+..|+.-+..++...+..++--|+.++++ |.+...+.+.|+...|.++-
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHH
Confidence 6777777655443334433444444 447788888888888777788999999998875 78889999999999988765
Q ss_pred cCCCccHHHHHHHHHH
Q 017926 268 GNSSFEIRLHRKAVSL 283 (363)
Q Consensus 268 ~s~~~~~klr~kA~~l 283 (363)
... +..++...--+
T Consensus 81 ~~~--~~~~~~~id~i 94 (98)
T PF14726_consen 81 PNV--EPNLQAEIDEI 94 (98)
T ss_pred hcC--CHHHHHHHHHH
Confidence 433 34455444333
No 190
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=82.66 E-value=29 Score=30.13 Aligned_cols=70 Identities=14% Similarity=0.122 Sum_probs=52.4
Q ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHH-HHHhhcCC---CHHHHHHHHHHHHHHhcC
Q 017926 177 SVLVGQLN-HPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSK-LMKMVKSS---FVEEAVKALYTVSSLIRN 246 (363)
Q Consensus 177 ~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~-Ll~LL~s~---~~~v~~kAL~ALSsLiR~ 246 (363)
..|-.=|+ +.++.+...|..+|-++++|. +..+..+...+.+.. |++++... +..|+.|.+.-|-+-...
T Consensus 41 ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 41 RALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 33444444 468999999999999999997 578888888899997 99999742 346787777766655443
No 191
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=82.64 E-value=9.2 Score=36.40 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=69.7
Q ss_pred HHHHHHHHHHcccCCCchhhHHhcCCHHH-HHHhcCC-----CCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHH
Q 017926 150 SQRALQELLILVEPIDNANDLSKLGGLSV-LVGQLNH-----PDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLM 222 (363)
Q Consensus 150 k~~AL~~L~~Lve~iDnAn~l~~lGgl~~-Li~lL~s-----~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll 222 (363)
...||.-|.-++.......-|.... +|. +..+|+. +.+-+|..+..+||.+++|. +.+-........+|.++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~Ah-iplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAH-IPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecc-cceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 3567776777777777766666543 332 3355542 45789999999999999985 44555556679999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCc
Q 017926 223 KMVKSSFVEEAVKALYTVSSLIRNNL 248 (363)
Q Consensus 223 ~LL~s~~~~v~~kAL~ALSsLiR~~~ 248 (363)
++...++.--+.-|++-+.-++-+..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDv 221 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDV 221 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccch
Confidence 99999876556677777777776543
No 192
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=82.14 E-value=7.6 Score=33.26 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHH
Q 017926 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (363)
Q Consensus 235 kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~ 314 (363)
..+-.|+-+|+..+.+.. .++..|..=|+++ ++.++..|+.++-.+.. +..+.+...+.+..++..|+.
T Consensus 19 ~~~l~icD~i~~~~~~~k-----~a~r~l~krl~~~--n~~v~l~AL~lLe~~vk----Ncg~~f~~ev~s~~fl~~L~~ 87 (133)
T smart00288 19 ELILEICDLINSTPDGPK-----DAVRLLKKRLNNK--NPHVALLALTLLDACVK----NCGSKFHLEVASKEFLNELVK 87 (133)
T ss_pred HHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HCCHHHHHHHHhHHHHHHHHH
Confidence 455667777776644332 2345577777776 56789999999999987 366777888888999999999
Q ss_pred hccCC-Chh-HHHHHHHHHHhhcc
Q 017926 315 LTASA-DLD-LQEKVFLEHVFCGL 336 (363)
Q Consensus 315 lL~~~-d~~-lqE~al~aL~~~~~ 336 (363)
++... +.. ++++++..+..++.
T Consensus 88 l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 88 LIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHcCCCCcHHHHHHHHHHHHHHHH
Confidence 99875 434 99999999885554
No 193
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=82.06 E-value=19 Score=31.94 Aligned_cols=110 Identities=11% Similarity=0.062 Sum_probs=75.6
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc--HHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhh
Q 017926 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293 (363)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG--~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~ 293 (363)
.....+..+|.+.+..-|-.++.-+..+++.++ .+.|.+.++ +..|+.+|+.+. +..++.-++..+..|....
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~-~~~~~~~ai~~L~~l~~~~-- 99 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPD-PPSVLEAAIITLTRLFDLI-- 99 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHh--
Confidence 356678899999888888899999999998764 467777665 578888888863 5678888999999988632
Q ss_pred cCCCCcchhHHhC---CcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 294 NMHKVEPPLFRDR---FFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 294 ~~~~~~~~~l~~~---g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
...++....+... +++..++.+++. ..+.+.++.+|.
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~ 139 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALA 139 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHH
Confidence 2334433333332 445555555553 456666666655
No 194
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=81.56 E-value=10 Score=32.39 Aligned_cols=74 Identities=20% Similarity=0.135 Sum_probs=59.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCccc-HHHHHhcCcHHHHHHhhcCC-CccHHHHHHHHHHHHHHhhh
Q 017926 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFYVEAGDLMLQDILGNS-SFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a-~~~f~~~gG~~~L~~lL~s~-~~~~klr~kA~~lL~~L~~~ 290 (363)
++..|-+-|+++++.++..|+..|-.+++|+... ...|....-+.-|+.++..+ ..+..+|.|+.-++......
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5677778888888899999999999999998664 44455556677788888764 56788999999999998853
No 195
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=81.32 E-value=8.7 Score=36.30 Aligned_cols=178 Identities=16% Similarity=0.158 Sum_probs=100.8
Q ss_pred ccCCCHHHHHHhHHHHHHHHHHcCCCCH----H-HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCC-
Q 017926 102 VQRLSPSELKKRQMEIKELMEKLKTPSD----A-QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGG- 175 (363)
Q Consensus 102 ~~~~~~e~l~~r~~~Lkeal~~l~~~~d----~-~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGg- 175 (363)
..++++++++ .|+++++.+..++. . .........+. ..+.+.+.-++|-+.-++-+...+.-+...++
T Consensus 33 ~~~l~~~el~----~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~ 106 (268)
T PF08324_consen 33 ELKLSEEELE----SLESLLSALKSTSAYHSDLSAWLILLLKILL--SWPPESRFPALDLLRLAALHPPASDLLASEDSG 106 (268)
T ss_dssp CT-S-HHHHH----HHHHHHCCCCCC-SS---HHHHHHHHHHHHC--CS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH
T ss_pred ccCCCHHHHH----HHHHHHHHhcCCCccccchhHHHHHHHHHHH--hCCCccchhHHhHHHHHHhCccHHHHHhccccc
Confidence 3578887665 47777765543221 2 22333344443 34557799999999998888887776666542
Q ss_pred -HHHHHHhcC----CCCHHHHHHHHHHHHHHhccChHHHHHHHHc-C-cHHHHHHhhcCC----CHHHHH---HHHHHHH
Q 017926 176 -LSVLVGQLN----HPDTDIRKISAWILGKASQNNPLVQKQVLEL-G-ALSKLMKMVKSS----FVEEAV---KALYTVS 241 (363)
Q Consensus 176 -l~~Li~lL~----s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~-G-~lp~Ll~LL~s~----~~~v~~---kAL~ALS 241 (363)
...+..++. +..+..+..++++++++..+.+ .+..+++. + .+...+..+... +..++. ..++-+|
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nls 185 (268)
T PF08324_consen 107 IADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLS 185 (268)
T ss_dssp -HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 334444332 3578999999999999998544 55555554 3 344454444443 344443 4455555
Q ss_pred HHhcCCcc-cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 242 SLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 242 sLiR~~~~-a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
......+. .... ..-+..+.+.+.....+....-+.+-++.+|+.
T Consensus 186 v~~~~~~~~~~~~---~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~ 231 (268)
T PF08324_consen 186 VLLHKNRSDEEWQ---SELLSSIIEVLSREESDEEALYRLLVALGTLLS 231 (268)
T ss_dssp HHHHHCTS-CCHH---HHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCChHHH---HHHHHHHHHHhccccCCHHHHHHHHHHHHHHhc
Confidence 54444332 1100 112344555333332355677889999999985
No 196
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=81.20 E-value=4.1 Score=45.33 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHccc--------CCCchhhHHhcCCHHHHHHhcCC--------CCHHHHHHHHHHHHHHhccChHHHHH
Q 017926 148 EDSQRALQELLILVE--------PIDNANDLSKLGGLSVLVGQLNH--------PDTDIRKISAWILGKASQNNPLVQKQ 211 (363)
Q Consensus 148 e~k~~AL~~L~~Lve--------~iDnAn~l~~lGgl~~Li~lL~s--------~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~ 211 (363)
+..+..+..++.+++ +-.-|++|.++||+..++.+... +..++-..|..+|+-+. --|+.|.+
T Consensus 567 ~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t-~iP~iq~~ 645 (1516)
T KOG1832|consen 567 EAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVT-SIPDIQKA 645 (1516)
T ss_pred hHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeE-ecchHHHH
Confidence 444555555555554 23569999999999999988753 33567777877777554 46888887
Q ss_pred HHHc--------CcHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCCcc------------------------------
Q 017926 212 VLEL--------GALSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLA------------------------------ 249 (363)
Q Consensus 212 ~le~--------G~lp~Ll~LL~s~----~~~v~~kAL~ALSsLiR~~~~------------------------------ 249 (363)
+... .||..+++-.... +++++..||..|-+++-.-|.
T Consensus 646 La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le 725 (1516)
T KOG1832|consen 646 LAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLE 725 (1516)
T ss_pred HHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHH
Confidence 7643 2555555444322 456777777777665543222
Q ss_pred -----cHHHHHhcCcHHHHHHhhcCCC---ccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh
Q 017926 250 -----GQEMFYVEAGDLMLQDILGNSS---FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305 (363)
Q Consensus 250 -----a~~~f~~~gG~~~L~~lL~s~~---~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~ 305 (363)
....+...+|+.+|+.+|+-.. +...+|.-|+..|.-|+. ++..++.+.+
T Consensus 726 ~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR------~~tVrQIltK 783 (1516)
T KOG1832|consen 726 QVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLAR------DDTVRQILTK 783 (1516)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccc------CcHHHHHHHh
Confidence 2344556789999999997542 245688889999888885 5555555544
No 197
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=80.79 E-value=5.4 Score=36.12 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=58.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcc---ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQN---NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 251 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN---Np~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~ 251 (363)
|+.++++.-+++..+|..|..+|..+.+. ||. -++|.|+.|..++++.++.+|...+..+...++.-.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 56778888899999999999999998874 663 479999999999999999999999999987776543
No 198
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=80.78 E-value=7.2 Score=31.50 Aligned_cols=86 Identities=20% Similarity=0.165 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHH
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
+..++++..++++. +..|..+|..|..||+..+ ......-+.+..++..|+++++-|=-.|..+++.++.-.|.
T Consensus 3 ~~~~~al~~L~dp~--~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~--- 76 (92)
T PF10363_consen 3 ETLQEALSDLNDPL--PPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD--- 76 (92)
T ss_pred HHHHHHHHHccCCC--cchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH---
Confidence 45677888887765 4679999999999999988 11112224566777899999999999999999999987663
Q ss_pred HHHHcCcHHHHHHhhcC
Q 017926 211 QVLELGALSKLMKMVKS 227 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s 227 (363)
.++|.|++...+
T Consensus 77 -----~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 -----EVLPILLDEYAD 88 (92)
T ss_pred -----HHHHHHHHHHhC
Confidence 356777665544
No 199
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.16 E-value=59 Score=32.34 Aligned_cols=208 Identities=13% Similarity=0.093 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHH
Q 017926 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV 208 (363)
Q Consensus 129 d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~ 208 (363)
+...||..++.+.+... -..|...+-++..+...++.+... .+..++..+.++...+-...|.+++++++....+
T Consensus 42 ~~~~lk~l~qL~~~~~~----~~~a~~alVnlsq~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~ 116 (353)
T KOG2973|consen 42 SEALLKDLTQLLKDLDP----AEPAATALVNLSQKEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEV 116 (353)
T ss_pred hhhhHHHHHHHccCccc----ccHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHH
Confidence 34556656565554432 223333444444455556666666 5566677777877788888999999999877666
Q ss_pred HHHHHHc-----CcHHHHHHhhcCCCHH--H-HHHHHHHHHHHhcCCcccHHHHHhcCc--HHHHHHhhcCCCccHHHHH
Q 017926 209 QKQVLEL-----GALSKLMKMVKSSFVE--E-AVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILGNSSFEIRLHR 278 (363)
Q Consensus 209 Q~~~le~-----G~lp~Ll~LL~s~~~~--v-~~kAL~ALSsLiR~~~~a~~~f~~~gG--~~~L~~lL~s~~~~~klr~ 278 (363)
....... .+++.|+.-+...+-. . -.-...-+++|.| ++.++..|....- .+.|..+-+ . +..+|+
T Consensus 117 ~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~-~~~gR~l~~~~k~~p~~kll~ft~-~--~s~vRr 192 (353)
T KOG2973|consen 117 AALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ-FEAGRKLLLEPKRFPDQKLLPFTS-E--DSQVRR 192 (353)
T ss_pred HHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh-hhhhhhHhcchhhhhHhhhhcccc-c--chhhhc
Confidence 6554432 3555555554433211 0 1122223334433 3555666655441 122222222 1 233443
Q ss_pred H-HHHHHHHHhhhhh------------------hcCCCCcchhHHhCCcHHHHHHhcc-----CCChhHHHHHHHHHHhh
Q 017926 279 K-AVSLVGDLAKCQL------------------ENMHKVEPPLFRDRFFLKSVVDLTA-----SADLDLQEKVFLEHVFC 334 (363)
Q Consensus 279 k-A~~lL~~L~~~~~------------------~~~~~~~~~~l~~~g~v~~Lv~lL~-----~~d~~lqE~al~aL~~~ 334 (363)
. .+..|.|.|...- .-.+++....=--.++...| +.|. .+|++++.+-+.||.++
T Consensus 193 ~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lL 271 (353)
T KOG2973|consen 193 GGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLL 271 (353)
T ss_pred cchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhh-hcCCccccCCCChHHHHHHHHHHHHH
Confidence 3 4455666554210 00011100000012333333 5554 34899999999999965
Q ss_pred cccccCchhhhhH
Q 017926 335 GLVFCTCPCIVRG 347 (363)
Q Consensus 335 ~~~~~~~~~~~r~ 347 (363)
.+.... ++.+|.
T Consensus 272 caT~~G-Re~lR~ 283 (353)
T KOG2973|consen 272 CATRAG-REVLRS 283 (353)
T ss_pred HhhhHh-HHHHHh
Confidence 444432 344444
No 200
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=80.01 E-value=17 Score=35.11 Aligned_cols=106 Identities=15% Similarity=0.013 Sum_probs=71.7
Q ss_pred CcHHHHH-HhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhc
Q 017926 216 GALSKLM-KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (363)
Q Consensus 216 G~lp~Ll-~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~ 294 (363)
+.+..|+ .-+.+++..+|..++-+|+-.+=-+..... .-+..+...++.+ +..+|..|+..+.++....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~--~~~v~~~al~~l~Dll~~~--- 95 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD--DEEVKITALKALFDLLLTH--- 95 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHc---
Confidence 4555555 667787889999999998855443332221 2356677777554 6779999999999998642
Q ss_pred CCCCcch-------hHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 295 MHKVEPP-------LFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 295 ~~~~~~~-------~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
+....+ ......+++.+.+.|.+.++++|..+..++.
T Consensus 96 -g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~ 139 (298)
T PF12719_consen 96 -GIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLC 139 (298)
T ss_pred -CchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 222111 1223567888888888888888888877754
No 201
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=79.71 E-value=7.5 Score=41.28 Aligned_cols=116 Identities=13% Similarity=0.105 Sum_probs=70.7
Q ss_pred CHHHHHHhcC----CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCC
Q 017926 175 GLSVLVGQLN----HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNN 247 (363)
Q Consensus 175 gl~~Li~lL~----s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~---~~~v~~kAL~ALSsLiR~~ 247 (363)
.++.+...|. ..+.+-+..+..+||++-. | ..++.|..++... +..+|..|++|+..+...+
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~ 555 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC 555 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC
Confidence 4555555554 3566777888888888753 2 4688888888876 4578999999999886665
Q ss_pred cccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHH
Q 017926 248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQ 324 (363)
Q Consensus 248 ~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lq 324 (363)
+. -..+.|..++.+...+..+|..|..+|-.- +|. ...+..++..+..+ +..+.
T Consensus 556 ~~--------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~--------~P~-------~~~l~~i~~~l~~E~~~QV~ 610 (618)
T PF01347_consen 556 PE--------KVREILLPIFMNTTEDPEVRIAAYLILMRC--------NPS-------PSVLQRIAQSLWNEPSNQVA 610 (618)
T ss_dssp HH--------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT------------------HHHHHHHHHHHTT-S-HHHH
T ss_pred cH--------HHHHHHHHHhcCCCCChhHHHHHHHHHHhc--------CCC-------HHHHHHHHHHHhhCchHHHH
Confidence 53 234567777777655667777665443321 222 34667777777654 44443
No 202
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=78.17 E-value=17 Score=33.27 Aligned_cols=128 Identities=10% Similarity=0.064 Sum_probs=81.1
Q ss_pred cCCCCHHHHHHHHHHHHHHhccChHHHHHH---------------HHcCcHHHHHHhhcCCC------HHHHHHHHHHHH
Q 017926 183 LNHPDTDIRKISAWILGKASQNNPLVQKQV---------------LELGALSKLMKMVKSSF------VEEAVKALYTVS 241 (363)
Q Consensus 183 L~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~---------------le~G~lp~Ll~LL~s~~------~~v~~kAL~ALS 241 (363)
+.+++....-.+|.+|++++....-+...+ .+...+..|++.+..+. ..---...+-++
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 334455566778888888887544333221 22347888888887621 122346778888
Q ss_pred HHhcCCcccHHHHHhc--Cc--HHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHh---CCcHHHHHH
Q 017926 242 SLIRNNLAGQEMFYVE--AG--DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD---RFFLKSVVD 314 (363)
Q Consensus 242 sLiR~~~~a~~~f~~~--gG--~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~---~g~v~~Lv~ 314 (363)
|+.+ .+.+++.|.+. +. ++.|+..+.+. +.--|.-++.+|.|+|.. ....+.+.. -++++.|.-
T Consensus 84 NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~--s~iRR~Gva~~IrNccFd------~~~H~~LL~~~~~~iLp~LLl 154 (192)
T PF04063_consen 84 NLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHK--SVIRRGGVAGTIRNCCFD------TDSHEWLLSDDEVDILPYLLL 154 (192)
T ss_pred HhcC-CHHHHHHHhCchhhhhHHHHHHHHhccC--cHHHHHHHHHHHHHhhcc------HhHHHHhcCchhhhhHHHHHh
Confidence 8876 47888888864 33 56666667776 333466788899999973 233345544 367777777
Q ss_pred hccCC
Q 017926 315 LTASA 319 (363)
Q Consensus 315 lL~~~ 319 (363)
-|..+
T Consensus 155 PLaGp 159 (192)
T PF04063_consen 155 PLAGP 159 (192)
T ss_pred hccCC
Confidence 77643
No 203
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=78.06 E-value=9.3 Score=37.80 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHHHcC--cHHHHHHhhcCCC---HHHHHHHHHHHHHHhcCCcccHH
Q 017926 189 DIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMVKSSF---VEEAVKALYTVSSLIRNNLAGQE 252 (363)
Q Consensus 189 ~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G--~lp~Ll~LL~s~~---~~v~~kAL~ALSsLiR~~~~a~~ 252 (363)
.+|..|..++..+. .++..+..+++.+ .+..|++++..+. ..++..|+++|.+|+++.....+
T Consensus 237 ~iRllAi~~l~~~~-~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 237 QIRLLAIANLVYIH-PESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHHhhC-CCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHH
Confidence 46666666666655 5777888888887 9999999999764 46799999999999997654444
No 204
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=76.37 E-value=23 Score=38.42 Aligned_cols=130 Identities=16% Similarity=0.155 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCC--HHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHH
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPD--TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK 223 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~--~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~ 223 (363)
+.++|..=+.-|.+-++.. -.++++...++.|+..+...+ .++...... ++.....-| ++.+.+|.|++
T Consensus 267 s~~eK~~Ff~~L~~~l~~~--pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k-~~k~ld~~e------yq~~i~p~l~k 337 (690)
T KOG1243|consen 267 SVEEKQKFFSGLIDRLDNF--PEEIIASKVLPILLAALEFGDAASDFLTPLFK-LGKDLDEEE------YQVRIIPVLLK 337 (690)
T ss_pred cHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhccccchhhhhHHHH-hhhhccccc------cccchhhhHHH
Confidence 5677766666665543333 467888888888887776544 233222222 222222222 44578999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 224 MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 224 LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
|++..+..+|...|.-+=..+++-. ...++--.++.+...+.+. +..+|..++..+..|+.
T Consensus 338 LF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DT--n~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 338 LFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDT--NATLREQTLKSMAVLAP 398 (690)
T ss_pred HhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccC--CHHHHHHHHHHHHHHHh
Confidence 9999999999888888888777644 4455666778888888776 56689999988888874
No 205
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.65 E-value=2.7 Score=42.19 Aligned_cols=65 Identities=12% Similarity=0.026 Sum_probs=55.1
Q ss_pred HHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCcccHHHHHhc
Q 017926 193 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS--SFVEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (363)
Q Consensus 193 ~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s--~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~ 257 (363)
+....||.+|-.||..|+.+.+.||++.++.--.- .++-++...++++-.+..+|..+|+.+.+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 35668999999999999999999999999876653 346679999999999999999988877653
No 206
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=75.31 E-value=9.2 Score=42.69 Aligned_cols=105 Identities=17% Similarity=0.150 Sum_probs=79.7
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCC---HHHHHHHHHHHHHHhcCCcccH
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF---VEEAVKALYTVSSLIRNNLAGQ 251 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~---~~v~~kAL~ALSsLiR~~~~a~ 251 (363)
.+|.|++.|.-++..+|..+..+|-...--.+..+..-+. -.+|.++.+=++.+ ..+|..|+.++.++.|--|...
T Consensus 910 LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~ 988 (1030)
T KOG1967|consen 910 LLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKS 988 (1030)
T ss_pred HHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcc
Confidence 4677789999999999999999999998877777765443 46888888777655 4679999999999999666554
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 017926 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 282 (363)
Q Consensus 252 ~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~ 282 (363)
-.-++-..+..|..+|.++ .-.+|..|+.
T Consensus 989 l~~fr~~Vl~al~k~LdDk--KRlVR~eAv~ 1017 (1030)
T KOG1967|consen 989 LLSFRPLVLRALIKILDDK--KRLVRKEAVD 1017 (1030)
T ss_pred cccccHHHHHHhhhccCcH--HHHHHHHHHH
Confidence 4444556778888999886 3446666554
No 207
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=73.14 E-value=49 Score=33.03 Aligned_cols=137 Identities=10% Similarity=0.040 Sum_probs=100.0
Q ss_pred HHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcC---cHHHHHHhhc
Q 017926 150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG---ALSKLMKMVK 226 (363)
Q Consensus 150 k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G---~lp~Ll~LL~ 226 (363)
-..+-.-|.+++.....|.-+..-.-+..+.+..+.++=+|-..|...+-.+-..|+..-..++..+ .+...-+||.
T Consensus 140 al~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~ 219 (335)
T PF08569_consen 140 ALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLE 219 (335)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444455555555555556555555666677888889999999999999999888998877777664 5678888998
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcccH---HHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 227 SSFVEEAVKALYTVSSLIRNNLAGQ---EMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 227 s~~~~v~~kAL~ALSsLiR~~~~a~---~~f~~-~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
+++=-.++.++--|+-++-+ +.+. ..++. ..-+..++.+|+++ +..+|..|...+.=.+.
T Consensus 220 s~NYvtkrqslkLL~ellld-r~n~~vm~~yi~~~~nLkl~M~lL~d~--sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 220 SSNYVTKRQSLKLLGELLLD-RSNFNVMTRYISSPENLKLMMNLLRDK--SKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp -SSHHHHHHHHHHHHHHHHS-GGGHHHHHHHTT-HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHH
T ss_pred CCCeEeehhhHHHHHHHHHc-hhHHHHHHHHHCCHHHHHHHHHHhcCc--chhhhHHHHHHHHHHHh
Confidence 88766799999999998865 3333 34443 35588999999987 44588999988887775
No 208
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=72.87 E-value=49 Score=31.84 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=37.6
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHH-HHHHHcCcHHHHH
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ-KQVLELGALSKLM 222 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q-~~~le~G~lp~Ll 222 (363)
.+|+++.++.+.++++|..++.++..+.++-+... ..+...|..+.+-
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~ 168 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFE 168 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHH
Confidence 47888999999999999999999999999877655 3345666555443
No 209
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=72.54 E-value=25 Score=38.68 Aligned_cols=119 Identities=12% Similarity=0.046 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHH
Q 017926 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 264 (363)
Q Consensus 186 ~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~ 264 (363)
.+.+||..|.-+||-++-..| ..+|..+.+|.. .++-||.-+..||+=.|.+.-. . -.+.+|-
T Consensus 567 ~nDDVrRaAVialGFVl~~dp---------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~------eAi~lLe 630 (929)
T KOG2062|consen 567 VNDDVRRAAVIALGFVLFRDP---------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-K------EAINLLE 630 (929)
T ss_pred cchHHHHHHHHHheeeEecCh---------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-H------HHHHHHh
Confidence 345555555555555554433 235666666654 3456677777777665555321 1 1244555
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHH
Q 017926 265 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVF 328 (363)
Q Consensus 265 ~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al 328 (363)
.+.+++ ..-+|.-|+-.++-+..+ ..+...+.+ .++.+.+..++...+.+..-+--
T Consensus 631 pl~~D~--~~fVRQgAlIa~amIm~Q----~t~~~~pkv--~~frk~l~kvI~dKhEd~~aK~G 686 (929)
T KOG2062|consen 631 PLTSDP--VDFVRQGALIALAMIMIQ----QTEQLCPKV--NGFRKQLEKVINDKHEDGMAKFG 686 (929)
T ss_pred hhhcCh--HHHHHHHHHHHHHHHHHh----cccccCchH--HHHHHHHHHHhhhhhhHHHHHHH
Confidence 555544 445666666666655544 344444433 35666777777666555554433
No 210
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=72.42 E-value=12 Score=29.04 Aligned_cols=68 Identities=10% Similarity=0.117 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCc
Q 017926 233 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF 308 (363)
Q Consensus 233 ~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~ 308 (363)
.+.|+||++++.. .+.+...+.+.+-++.++++....+ ...+|--+.+.+.-++. ..+-.+.+.+.|+
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~-v~siRGT~fy~Lglis~------T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSP-VLSIRGTCFYVLGLISS------TEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCC-ccchHHHHHHHHHHHhC------CHHHHHHHHHcCC
Confidence 4579999999976 4677777777899999999988653 34466656666655553 4455666666665
No 211
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=71.96 E-value=1.1e+02 Score=30.27 Aligned_cols=153 Identities=10% Similarity=0.057 Sum_probs=98.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhc-cChHHHHHHHHc-C-cHHHHHHhhcCC-----C--------HHHHHHHHHH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQ-NNPLVQKQVLEL-G-ALSKLMKMVKSS-----F--------VEEAVKALYT 239 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aq-NNp~~Q~~~le~-G-~lp~Ll~LL~s~-----~--------~~v~~kAL~A 239 (363)
+..+.+.|++..+.+...+...+..++. +.......++.. + -++.|-+++... . ..+|...+.-
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788899999999999999999999999 888888888766 2 234455555321 1 1667665554
Q ss_pred HHHHhc-CCcccHHHHHhcCc-HHHHHHhhcCCCccHHHHHHHHHHHH-HHhhhhhhcCCCCcchhHHhCCcHHHHHHhc
Q 017926 240 VSSLIR-NNLAGQEMFYVEAG-DLMLQDILGNSSFEIRLHRKAVSLVG-DLAKCQLENMHKVEPPLFRDRFFLKSVVDLT 316 (363)
Q Consensus 240 LSsLiR-~~~~a~~~f~~~gG-~~~L~~lL~s~~~~~klr~kA~~lL~-~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL 316 (363)
+-++++ +++.....+++.++ +..+..-|..+ +..+-...+..+. ++..+. .-....+-.+.+...+..|+.+-
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D--~~~~v~~iL~~l~~~Vl~~~--~v~r~~K~~~fn~~~L~~l~~Ly 213 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD--PPETVILILETLKDKVLKDS--SVSRSTKCKLFNEWTLSQLASLY 213 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCC--CHHHHHHHHHHHHHHhccCC--CCChhhhhhhcCHHHHHHHHHHh
Confidence 444444 45666777887665 56666667765 3344444444444 233210 11233445566788999999988
Q ss_pred cCCCh----hHHHHHHHHHH
Q 017926 317 ASADL----DLQEKVFLEHV 332 (363)
Q Consensus 317 ~~~d~----~lqE~al~aL~ 332 (363)
...+. .+.+.+-.-|.
T Consensus 214 ~~~~~~~~~~~~~~vh~fL~ 233 (330)
T PF11707_consen 214 SRDGEDEKSSVADLVHEFLL 233 (330)
T ss_pred cccCCcccchHHHHHHHHHH
Confidence 87766 66666555444
No 212
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=70.90 E-value=1e+02 Score=34.23 Aligned_cols=172 Identities=13% Similarity=0.104 Sum_probs=103.3
Q ss_pred HHHHHhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC
Q 017926 108 SELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLS--LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH 185 (363)
Q Consensus 108 e~l~~r~~~Lkeal~~l~~~~d~~lmk~al~~L~~~~~s--~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s 185 (363)
++...|.++++..+.-...-+...++......+.+.... ...|..+.--+..+.-.... +.++...-+..-++.+.
T Consensus 171 eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~--~~vk~elr~~~~~lc~d 248 (759)
T KOG0211|consen 171 EETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPD--DAVKRELRPIVQSLCQD 248 (759)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCCh--HHHHHHHHHHHHhhccc
Confidence 345567777776665443222233333333333322111 11234444444443333321 55666556666677788
Q ss_pred CCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHH
Q 017926 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 265 (363)
Q Consensus 186 ~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~ 265 (363)
.++.+|..++.=+|..++- .+......+.+|.+.+|...+.+.||..|.-++-++.......- =...-+.+.++.
T Consensus 249 ~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~ 323 (759)
T KOG0211|consen 249 DTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQ 323 (759)
T ss_pred cchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHH
Confidence 8999999999999988764 44577888999999999999989998888888877765543321 112245566666
Q ss_pred hhcCCCccHHHHHHHHHHHHHHh
Q 017926 266 ILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 266 lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
...+. +.+++..+.-....|.
T Consensus 324 ~~~d~--~~~v~~~~~~~~~~L~ 344 (759)
T KOG0211|consen 324 AVEDG--SWRVSYMVADKFSELS 344 (759)
T ss_pred HhcCh--hHHHHHHHhhhhhhHH
Confidence 66655 4555555555555554
No 213
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=70.84 E-value=99 Score=30.47 Aligned_cols=131 Identities=9% Similarity=-0.017 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc-CCcccHHHHHhc-C-cHHHH
Q 017926 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR-NNLAGQEMFYVE-A-GDLML 263 (363)
Q Consensus 187 ~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR-~~~~a~~~f~~~-g-G~~~L 263 (363)
+...+..+..++-++.|+ + ++.+.+.|.+....+...++.-|.++++ +.......|.+. + ..+.+
T Consensus 39 ~~~~~~~g~~l~~~iL~~----------~--~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l 106 (330)
T PF11707_consen 39 DLSFQSYGLELIRSILQN----------H--LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSL 106 (330)
T ss_pred chhHHHHHHHHHHHHHHH----------H--HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhH
Confidence 344666666666665543 1 7788888998887777899999999999 665566666654 3 34566
Q ss_pred HHhhcCCC----cc-------HHHHHHHHHHHHHHhhhhhhcCCCCcchh-HHhCCcHHHHHHhccCCChhHHHHHHHHH
Q 017926 264 QDILGNSS----FE-------IRLHRKAVSLVGDLAKCQLENMHKVEPPL-FRDRFFLKSVVDLTASADLDLQEKVFLEH 331 (363)
Q Consensus 264 ~~lL~s~~----~~-------~klr~kA~~lL~~L~~~~~~~~~~~~~~~-l~~~g~v~~Lv~lL~~~d~~lqE~al~aL 331 (363)
..++.... .. ..+|...+.++-+++.. .++..+.. +.+.+++..+..-|..+++++...++.+|
T Consensus 107 ~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~----~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l 182 (330)
T PF11707_consen 107 PKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSS----GDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETL 182 (330)
T ss_pred HHHhccccccccccccccccCcCHHHHHHHHHHHHHcc----CCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHH
Confidence 66663221 10 15777777777777763 45555444 45678899999999999999999999998
Q ss_pred Hh
Q 017926 332 VF 333 (363)
Q Consensus 332 ~~ 333 (363)
..
T Consensus 183 ~~ 184 (330)
T PF11707_consen 183 KD 184 (330)
T ss_pred HH
Confidence 83
No 214
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=70.49 E-value=10 Score=32.64 Aligned_cols=93 Identities=18% Similarity=0.176 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHH
Q 017926 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 314 (363)
Q Consensus 235 kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~ 314 (363)
..+..|+-+|+..+.+.. ..+..|..-|.+. +++++..|+.++-.++.+ .++.+...+.+..++..|..
T Consensus 24 ~~~l~icD~i~~~~~~~k-----ea~~~l~krl~~~--~~~vq~~aL~lld~lvkN----cg~~f~~ev~~~~fl~~l~~ 92 (140)
T PF00790_consen 24 SLILEICDLINSSPDGAK-----EAARALRKRLKHG--NPNVQLLALTLLDALVKN----CGPRFHREVASKEFLDELVK 92 (140)
T ss_dssp HHHHHHHHHHHTSTTHHH-----HHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHH----SHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHH-----HHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHc----CCHHHHHHHhHHHHHHHHHH
Confidence 455568888887644332 3456677778886 677899999999999873 56677778888889999999
Q ss_pred hccCC-Chh---HHHHHHHHHHhhcccc
Q 017926 315 LTASA-DLD---LQEKVFLEHVFCGLVF 338 (363)
Q Consensus 315 lL~~~-d~~---lqE~al~aL~~~~~~~ 338 (363)
++... ... ++++++..|..++...
T Consensus 93 l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 93 LIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 88754 333 8999999988666544
No 215
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=70.39 E-value=24 Score=28.92 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHH
Q 017926 234 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313 (363)
Q Consensus 234 ~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv 313 (363)
.+.+..|+-++++++.... ..+..|..-|.++ +.+++.+|+.+|.+|+. ++++.+...+.+..++..++
T Consensus 18 ~~~i~~i~d~~~~~~~~~~-----~~~~~l~kRl~~~--~~~~~lkaL~lLe~lvk----N~g~~f~~~i~~~~~~~~l~ 86 (115)
T cd00197 18 WPLIMEICDLINETNVGPK-----EAVDAIKKRINNK--NPHVVLKALTLLEYCVK----NCGERFHQEVASNDFAVELL 86 (115)
T ss_pred HHHHHHHHHHHHCCCccHH-----HHHHHHHHHhcCC--cHHHHHHHHHHHHHHHH----HccHHHHHHHHHhHHHHHHH
Confidence 4566667777765533222 2455666667775 67899999999999997 46777778888888877776
Q ss_pred Hh-----ccC-CChhHHHHHHHHHH
Q 017926 314 DL-----TAS-ADLDLQEKVFLEHV 332 (363)
Q Consensus 314 ~l-----L~~-~d~~lqE~al~aL~ 332 (363)
.. ... .+..++++++..+.
T Consensus 87 ~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 87 KFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred HhhccccccCCCChHHHHHHHHHHH
Confidence 53 111 27899999988776
No 216
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=70.34 E-value=25 Score=30.51 Aligned_cols=94 Identities=17% Similarity=0.125 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHH-HH
Q 017926 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS-VV 313 (363)
Q Consensus 235 kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~-Lv 313 (363)
..+-.|+-+|+..+.+- -.++..|..=|.+. .+.+++..|+.++-.++. |....+...+.+..++.. |+
T Consensus 20 ~~ileicD~In~~~~~~-----k~a~ralkkRl~~~-~n~~v~l~aL~LLe~~vk----NCG~~fh~eiask~Fl~e~L~ 89 (141)
T cd03565 20 GLNMEICDIINETEDGP-----KDAVRALKKRLNGN-KNHKEVMLTLTVLETCVK----NCGHRFHVLVAKKDFIKDVLV 89 (141)
T ss_pred HHHHHHHHHHhCCCCcH-----HHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHhhhHHHH
Confidence 45566777776533221 13455566656532 256788899999999987 467778888888999997 99
Q ss_pred HhccC---CChhHHHHHHHHHHhhcccc
Q 017926 314 DLTAS---ADLDLQEKVFLEHVFCGLVF 338 (363)
Q Consensus 314 ~lL~~---~d~~lqE~al~aL~~~~~~~ 338 (363)
.++.. .+..++++++..+..++...
T Consensus 90 ~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 90 KLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 99973 24689999999998666543
No 217
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=69.68 E-value=66 Score=30.89 Aligned_cols=136 Identities=17% Similarity=0.108 Sum_probs=79.4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCcccHHHHHh
Q 017926 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS--SFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (363)
Q Consensus 179 Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s--~~~~v~~kAL~ALSsLiR~~~~a~~~f~~ 256 (363)
|=..|+++++.+|..|..+|+.+..+-|.-. +...-+..|++.+.+ ++.....-++.++..+++...-. .
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~-----~ 75 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS-----P 75 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC-----h
Confidence 3467899999999999999999998766321 333335666655543 23333444577777777543211 1
Q ss_pred cCcHHHHHHhhcC---CCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHH--hCCcHHHHHHhccCC-ChhHHHHHHHH
Q 017926 257 EAGDLMLQDILGN---SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR--DRFFLKSVVDLTASA-DLDLQEKVFLE 330 (363)
Q Consensus 257 ~gG~~~L~~lL~s---~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~--~~g~v~~Lv~lL~~~-d~~lqE~al~a 330 (363)
..+..++..+.+. ..-....|.++-.++..|.... ...+. ..+++..+++..... ||...-.+-.-
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--------~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l 147 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--------REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKL 147 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--------HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 1233444444432 1224556777777888777521 12222 246777788887765 77666544333
No 218
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=69.47 E-value=55 Score=28.90 Aligned_cols=140 Identities=18% Similarity=0.164 Sum_probs=83.0
Q ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCcccHHH
Q 017926 176 LSVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEM 253 (363)
Q Consensus 176 l~~Li~lL~s-~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL-~s~~~~v~~kAL~ALSsLiR~~~~a~~~ 253 (363)
++.|+++|++ .+.++|..+..+||.+-.=.|.-.+.+....- ... .+.........+ ...+..+..+.
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-----~~~~~~~~~~~~~~~l-----~~~~~~~~~ee 81 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-----SKSSENSNDESTDISL-----PMMGISPSSEE 81 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-----ccccccccccchhhHH-----hhccCCCchHH
Confidence 5667788865 46999999999999998777755543222111 000 000011111111 21233345677
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 254 f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
|+-.-.+..|+..|++++. ...+..++.++.++... .+....+.+ .-++|.++..++..+...+|-.+.-|.
T Consensus 82 ~y~~vvi~~L~~iL~D~sL-s~~h~~vv~ai~~If~~----l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSL-SSHHTAVVQAIMYIFKS----LGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred HHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHh----cCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8877888889998888743 33455677777776642 122333333 247788888888766688887666544
No 219
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=68.30 E-value=17 Score=32.33 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 017926 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 245 (363)
Q Consensus 191 r~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR 245 (363)
+..|...||++-..- -+.+|+.+|.+++..+...|.-+|++.+=
T Consensus 80 ~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 80 PAEAVELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 466777777775421 17788888877777777788888887553
No 220
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=67.77 E-value=23 Score=39.67 Aligned_cols=129 Identities=16% Similarity=0.091 Sum_probs=90.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCC----HHHHHHHHHHHHHHhccChH
Q 017926 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPD----TDIRKISAWILGKASQNNPL 207 (363)
Q Consensus 132 lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~----~~Ir~~Aa~~Lgt~aqNNp~ 207 (363)
+....+.++...+.++-....+.+-++++++..+|...+.. --+|.+++.|+.+. +.+...|+-+|.++..|-|.
T Consensus 572 I~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~ 650 (1005)
T KOG2274|consen 572 ICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPS 650 (1005)
T ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCC
Confidence 34456666666666776667788888888887777666654 37999999998765 88999999999999997443
Q ss_pred HHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHH
Q 017926 208 VQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 261 (363)
Q Consensus 208 ~Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~ 261 (363)
==...+-.-++|++.+..-+ ++.+.-..+--+|++++-...+....--..+|..
T Consensus 651 pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 651 PLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHN 705 (1005)
T ss_pred CccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc
Confidence 22222334578888887654 4566677778888888876665544444455554
No 221
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=67.68 E-value=1.1e+02 Score=32.53 Aligned_cols=135 Identities=14% Similarity=0.052 Sum_probs=89.1
Q ss_pred HHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC-CCHH------HHHHHHHHHHHHhccChHHHHHHHHcCcHHHHH
Q 017926 150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH-PDTD------IRKISAWILGKASQNNPLVQKQVLELGALSKLM 222 (363)
Q Consensus 150 k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s-~~~~------Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll 222 (363)
+..++-.|.-+|...+.|--=.-+.-||.|+..+.. .+++ +-..+-.||-.++.. |.-+...+..|+++.+-
T Consensus 80 ~~i~itvLacFC~~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~ 158 (698)
T KOG2611|consen 80 LQISITVLACFCRVPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIA 158 (698)
T ss_pred HHHHHHHHHHHhCChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHH
Confidence 445666777777776666544445678999998853 3333 677888888887765 88899999999999999
Q ss_pred HhhcCCC----HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 223 KMVKSSF----VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 223 ~LL~s~~----~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
++-.-.+ ..+..+.+.-+-+=+...+.....|... +..+..=+... +...+-..+.++.++..
T Consensus 159 Q~y~~~~~~~d~alal~Vlll~~~~~~cw~e~~~~flal--i~~va~df~~~--~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 159 QMYELPDGSHDMALALKVLLLLVSKLDCWSETIERFLAL--IAAVARDFAVL--HNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHhCCCCchhHHHHHHHHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHHh--hhHHHHHHHHHHHHHHh
Confidence 8765432 3455565555544444456667777764 33333333332 23467788888887764
No 222
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=66.89 E-value=41 Score=37.04 Aligned_cols=154 Identities=8% Similarity=0.035 Sum_probs=98.1
Q ss_pred HHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc-CcHHHHHHhhcCCCHHHHHH---HHHHHHHHhc
Q 017926 170 LSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSFVEEAVK---ALYTVSSLIR 245 (363)
Q Consensus 170 l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~-G~lp~Ll~LL~s~~~~v~~k---AL~ALSsLiR 245 (363)
+.+--+++.+-.++..+++.+|..++.++.++.-.+--.-..+.++ ..+|....++.......... ++-+|-+.+.
T Consensus 580 i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~ 659 (748)
T KOG4151|consen 580 ILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVE 659 (748)
T ss_pred HHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcch
Confidence 5555556656667778899999999999999998655555556664 67777777776644444332 3333666666
Q ss_pred CCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHH
Q 017926 246 NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQE 325 (363)
Q Consensus 246 ~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE 325 (363)
++.+. ..--..|...++.++.+. +..+|.+.+..+.++.. ...+..+.+.....+..+...=.-.....+|
T Consensus 660 n~c~~--~~~~~~~~e~~~~~i~~~--~~~~qhrgl~~~ln~~~-----~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~ 730 (748)
T KOG4151|consen 660 NHCSR--ILELLEWLEILVRAIQDE--DDEIQHRGLVIILNLFE-----ALFEIAEKIFETEVMELLSGLQKLNRAPKRE 730 (748)
T ss_pred hhhhh--HHHhhcchHHHHHhhcCc--hhhhhhhhhhhhhhHHH-----HHHHHHHHhccchHHHHHHHHHHhhhhhhhh
Confidence 66553 333458899999999887 56688888888888553 2334444444444444443332223445556
Q ss_pred HHHHHHH
Q 017926 326 KVFLEHV 332 (363)
Q Consensus 326 ~al~aL~ 332 (363)
.+..+|.
T Consensus 731 ~~~~~l~ 737 (748)
T KOG4151|consen 731 DAAPCLS 737 (748)
T ss_pred hhhhHHH
Confidence 5555544
No 223
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=66.40 E-value=39 Score=27.60 Aligned_cols=89 Identities=16% Similarity=0.217 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHH
Q 017926 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 264 (363)
Q Consensus 185 s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~ 264 (363)
.+.+.|...+.|++-+.- ... ..+..+.+-+...++.-+..++|-+-+++++...-...+......+.+.
T Consensus 16 ~S~~~I~~lt~~a~~~~~-----~a~-----~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~ 85 (114)
T cd03562 16 NSQPSIQTLTKLAIENRK-----HAK-----EIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFL 85 (114)
T ss_pred ccHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 367888888888888652 122 2344455566665667788999999999999655555555555588888
Q ss_pred HhhcCCCccHHHHHHHHHHHH
Q 017926 265 DILGNSSFEIRLHRKAVSLVG 285 (363)
Q Consensus 265 ~lL~s~~~~~klr~kA~~lL~ 285 (363)
...... +..+|.|...++.
T Consensus 86 ~~~~~~--~~~~r~kl~rl~~ 104 (114)
T cd03562 86 DAYEKV--DEKTRKKLERLLN 104 (114)
T ss_pred HHHHhC--CHHHHHHHHHHHH
Confidence 887754 6677877766654
No 224
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=65.92 E-value=41 Score=36.58 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=57.3
Q ss_pred HhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 017926 171 SKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 245 (363)
Q Consensus 171 ~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR 245 (363)
..-+.+|.|+++..+.+..||.. .|..+-+.-+...+.+++.-.+|.+..-+.+.++.+|...+-.+..++-
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLL---LLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHH---HHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 44567899999999999999965 5555555556677788899999999999999898888877777776653
No 225
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.71 E-value=43 Score=36.04 Aligned_cols=110 Identities=10% Similarity=0.100 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHH
Q 017926 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 262 (363)
Q Consensus 184 ~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~ 262 (363)
+..+.+||..|.-+||-+|-. +...++..+++|.. .+..||.....||+-.|.+.-.. -.+++
T Consensus 562 sD~nDDVrRAAViAlGfvc~~---------D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~di 625 (926)
T COG5116 562 SDGNDDVRRAAVIALGFVCCD---------DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDI 625 (926)
T ss_pred ccCchHHHHHHHHheeeeEec---------CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHH
Confidence 345677777777777766643 23567777777764 34566777777777666553221 13456
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhcc
Q 017926 263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA 317 (363)
Q Consensus 263 L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~ 317 (363)
|-.++.++ ..-+|..|+-.++-+..+ ++++..+.+. +.++.+-.++.
T Consensus 626 L~~L~~D~--~dfVRQ~AmIa~~mIl~Q----~n~~Lnp~v~--~I~k~f~~vI~ 672 (926)
T COG5116 626 LEALMYDT--NDFVRQSAMIAVGMILMQ----CNPELNPNVK--RIIKKFNRVIV 672 (926)
T ss_pred HHHHhhCc--HHHHHHHHHHHHHHHHhh----cCcccChhHH--HHHHHHHHHHh
Confidence 66666665 456888888888877764 3444443332 33444444443
No 226
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.59 E-value=34 Score=35.75 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=53.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSS 242 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s~--~~~v~~kAL~ALSs 242 (363)
+..|-+-|++.++.++..|..+|-+|+.|. ..+...|.+.++++.+|++.+.. +..||.|+|..|=.
T Consensus 40 vralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 40 VRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 344556677888899999999999999995 45566888999999999999986 34688888877754
No 227
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=64.21 E-value=1e+02 Score=29.65 Aligned_cols=139 Identities=15% Similarity=0.101 Sum_probs=79.1
Q ss_pred HHhcCCHHHHHHhcCCCC----HHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHH-HHh
Q 017926 170 LSKLGGLSVLVGQLNHPD----TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVS-SLI 244 (363)
Q Consensus 170 l~~lGgl~~Li~lL~s~~----~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALS-sLi 244 (363)
+.-++.+|-++.-+.+++ ...-..+|..|+.+|.++. ...+..++.......-.-+..-+..+. ++.
T Consensus 107 ~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~ 178 (262)
T PF14225_consen 107 FLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLR 178 (262)
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 333456666666666555 1344577788888885432 345666665555432111112222222 232
Q ss_pred cCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHH
Q 017926 245 RNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQ 324 (363)
Q Consensus 245 R~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lq 324 (363)
.++-|.. +..-+..|.++|..+ ..-+|.+++.+|..|..+. +-. .+ ....++..|..+|+.+ ..
T Consensus 179 ~~f~P~~----~~~~l~~Ll~lL~n~--~~w~~~~~L~iL~~ll~~~----d~~-~~--~~~dlispllrlL~t~---~~ 242 (262)
T PF14225_consen 179 EAFFPDH----EFQILTFLLGLLENG--PPWLRRKTLQILKVLLPHV----DMR-SP--HGADLISPLLRLLQTD---LW 242 (262)
T ss_pred HHhCchh----HHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhccc----cCC-CC--cchHHHHHHHHHhCCc---cH
Confidence 2231211 234566788888775 4568999999999998642 211 22 4566899999999874 44
Q ss_pred HHHHHHHH
Q 017926 325 EKVFLEHV 332 (363)
Q Consensus 325 E~al~aL~ 332 (363)
..|+..|.
T Consensus 243 ~eAL~VLd 250 (262)
T PF14225_consen 243 MEALEVLD 250 (262)
T ss_pred HHHHHHHH
Confidence 44555544
No 228
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=63.92 E-value=2.2e+02 Score=30.91 Aligned_cols=188 Identities=15% Similarity=0.108 Sum_probs=105.5
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCC---HH---------HHHHhcCCCCHHHHHHHHHHH
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGG---LS---------VLVGQLNHPDTDIRKISAWIL 198 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGg---l~---------~Li~lL~s~~~~Ir~~Aa~~L 198 (363)
..|--..++|.|..+.++-|..|--.|..-++..|.+....-..- ++ ..+.-|.++.|.+-..|+..|
T Consensus 39 qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~ 118 (858)
T COG5215 39 QFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLL 118 (858)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 344455556666555556666665556555554444333221111 11 123556788888888888888
Q ss_pred HHHhccChHHHHHHHHcCc----HHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCcccHHHHHhcCc--HHHHHHhhcCCC
Q 017926 199 GKASQNNPLVQKQVLELGA----LSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILGNSS 271 (363)
Q Consensus 199 gt~aqNNp~~Q~~~le~G~----lp~Ll~LL~s~~-~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG--~~~L~~lL~s~~ 271 (363)
+.++.-. +-.|. +..++.....+. ..++..++.++|.+|..-.| +..+...+. +.+....++..
T Consensus 119 aaIA~~E-------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~e- 189 (858)
T COG5215 119 AAIARME-------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNE- 189 (858)
T ss_pred HHHHHhh-------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccC-
Confidence 8887511 11233 444555555544 35788999999999987544 344444454 24444555554
Q ss_pred ccHHHHHHHHHHHHH-HhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 272 FEIRLHRKAVSLVGD-LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 272 ~~~klr~kA~~lL~~-L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
++..+|.-++.+|.+ |..-+..-..+..+ +=++..+++.-+.+|.++|.++..|+.
T Consensus 190 t~~avRLaaL~aL~dsl~fv~~nf~~E~er-----Ny~mqvvceatq~~d~e~q~aafgCl~ 246 (858)
T COG5215 190 TTSAVRLAALKALMDSLMFVQGNFCYEEER-----NYFMQVVCEATQGNDEELQHAAFGCLN 246 (858)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcchhhh-----chhheeeehhccCCcHHHHHHHHHHHH
Confidence 577899999988888 43322100011111 122333445555667788877777754
No 229
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=63.70 E-value=9.6 Score=31.89 Aligned_cols=43 Identities=28% Similarity=0.459 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHH
Q 017926 150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRK 192 (363)
Q Consensus 150 k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~ 192 (363)
.-..+..|..|....+.=..|+++|+++.|+.+|.|+|.+|..
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 3455666777777888888999999999999999999988854
No 230
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=63.33 E-value=99 Score=29.61 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=51.2
Q ss_pred cCCHHHHHHhcCCCCHH--------HHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCH--HHHHHHHHHHHH
Q 017926 173 LGGLSVLVGQLNHPDTD--------IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV--EEAVKALYTVSS 242 (363)
Q Consensus 173 lGgl~~Li~lL~s~~~~--------Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~--~v~~kAL~ALSs 242 (363)
-..+++|+++++.++.. +-..-..++.++++ |-++.|-+++.++.. -+|..|+.||..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 45789999999765432 22333344444444 456778888888764 368899999999
Q ss_pred HhcCCcccHHHHHhc
Q 017926 243 LIRNNLAGQEMFYVE 257 (363)
Q Consensus 243 LiR~~~~a~~~f~~~ 257 (363)
++..++..++.++++
T Consensus 140 l~~~~~~~Re~vi~~ 154 (249)
T PF06685_consen 140 LVHEGPISREEVIQY 154 (249)
T ss_pred HHHcCCCCHHHHHHH
Confidence 999998888777753
No 231
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=63.31 E-value=48 Score=36.46 Aligned_cols=105 Identities=14% Similarity=0.139 Sum_probs=71.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHH-HHHHc------CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK-QVLEL------GALSKLMKMVKSSFVEEAVKALYTVSSLIRNN- 247 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~-~~le~------G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~- 247 (363)
...++.+|++++-.+|..-..++|+++..- .|+ +.+++ ..+..|+.=+.+..+-+|.||+..++.|..-+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~--~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s 378 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHF--KKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS 378 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHH--hcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc
Confidence 567788999999999998888888887531 111 12221 23334444445556778999999999987642
Q ss_pred --cccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 248 --LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 248 --~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
+..+..| +....+.+++. +.-+|++|..+++-|..
T Consensus 379 k~~~~r~ev-----~~lv~r~lqDr--ss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 379 KTVGRRHEV-----IRLVGRRLQDR--SSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cccchHHHH-----HHHHHHHhhhh--hHHHHHHHHHHHHHHHh
Confidence 2233333 45666778876 45699999999999975
No 232
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=63.26 E-value=69 Score=32.38 Aligned_cols=132 Identities=11% Similarity=0.067 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHHhccChHH-HHHHHHcCcHHHHHHhh-cCCCH--HHHHHHHHHHHHHhcCCcc------------
Q 017926 186 PDTDIRKISAWILGKASQNNPLV-QKQVLELGALSKLMKMV-KSSFV--EEAVKALYTVSSLIRNNLA------------ 249 (363)
Q Consensus 186 ~~~~Ir~~Aa~~Lgt~aqNNp~~-Q~~~le~G~lp~Ll~LL-~s~~~--~v~~kAL~ALSsLiR~~~~------------ 249 (363)
+...-|..|+..|-.++...++. ...+. +.+..++.-. .+++. ..+-.|++.++++.-....
T Consensus 223 d~~TrR~AA~dfl~~L~~~~~~~v~~i~~--~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v 300 (370)
T PF08506_consen 223 DSDTRRRAACDFLRSLCKKFEKQVTSILM--QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV 300 (370)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred ccCCcHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence 34668889999999998754322 12111 2233333211 12322 3355699998887654321
Q ss_pred cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHH
Q 017926 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFL 329 (363)
Q Consensus 250 a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~ 329 (363)
....|.....++-|. .+.+..+-+|..|+..+...-.+ .. .+.+ .++++.++.+|++++.-++--|+.
T Consensus 301 ~v~~Ff~~~v~peL~---~~~~~~piLka~aik~~~~Fr~~----l~---~~~l--~~~~~~l~~~L~~~~~vv~tyAA~ 368 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQ---PDVNSHPILKADAIKFLYTFRNQ----LP---KEQL--LQIFPLLVNHLQSSSYVVHTYAAI 368 (370)
T ss_dssp -HHHHHHHHTCHHHH----SS-S-HHHHHHHHHHHHHHGGG----S----HHHH--HHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred cHHHHHHHHhHHHhc---ccCCCCcchHHHHHHHHHHHHhh----CC---HHHH--HHHHHHHHHHhCCCCcchhhhhhh
Confidence 235566555555554 12223456899999998887642 11 2222 358999999999998888888877
Q ss_pred HH
Q 017926 330 EH 331 (363)
Q Consensus 330 aL 331 (363)
|+
T Consensus 369 ~i 370 (370)
T PF08506_consen 369 AI 370 (370)
T ss_dssp HH
T ss_pred hC
Confidence 64
No 233
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=63.21 E-value=24 Score=29.43 Aligned_cols=80 Identities=20% Similarity=0.211 Sum_probs=54.5
Q ss_pred HhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHH
Q 017926 112 KRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLS--LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTD 189 (363)
Q Consensus 112 ~r~~~Lkeal~~l~~~~d~~lmk~al~~L~~~~~s--~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~ 189 (363)
+|+..+++.|... -..++.-..+.+...... .+....+|+-+..++.-++ .+.+...+-++.+..+|++ ++
T Consensus 67 ~r~~~l~~~l~~~----~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~-~~~i~~~~~l~~~~~~l~~--~~ 139 (148)
T PF08389_consen 67 ERRRELKDALRSN----SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP-IELIINSNLLNLIFQLLQS--PE 139 (148)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTTS--CC
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC-HHHhccHHHHHHHHHHcCC--HH
Confidence 5888888888752 234444455555543322 6778889999999999665 4455556678888898854 44
Q ss_pred HHHHHHHHH
Q 017926 190 IRKISAWIL 198 (363)
Q Consensus 190 Ir~~Aa~~L 198 (363)
++..|+.||
T Consensus 140 ~~~~A~~cl 148 (148)
T PF08389_consen 140 LREAAAECL 148 (148)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 588888876
No 234
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=63.06 E-value=59 Score=26.65 Aligned_cols=84 Identities=20% Similarity=0.194 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHH-cccCCCchhhHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh
Q 017926 148 EDSQRALQELLI-LVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 148 e~k~~AL~~L~~-Lve~iDnAn~l~-~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL 225 (363)
|-|+.||++++. +.+..=.-.++. .-+.+..|+.-.+.+++.....+...+..+++ +|.....+.+.|+..-|-++=
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHH
Confidence 567888888887 545555555666 45667777888888888899999999999886 677888888899998876666
Q ss_pred cCCCHHH
Q 017926 226 KSSFVEE 232 (363)
Q Consensus 226 ~s~~~~v 232 (363)
..-++..
T Consensus 81 ~~~~~~~ 87 (98)
T PF14726_consen 81 PNVEPNL 87 (98)
T ss_pred hcCCHHH
Confidence 5544433
No 235
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.89 E-value=81 Score=34.96 Aligned_cols=131 Identities=20% Similarity=0.171 Sum_probs=81.7
Q ss_pred ccCCCHHHHHHhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHH---------------HHHHHHHHHHHcccCCCc
Q 017926 102 VQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLE---------------DSQRALQELLILVEPIDN 166 (363)
Q Consensus 102 ~~~~~~e~l~~r~~~Lkeal~~l~~~~d~~lmk~al~~L~~~~~s~e---------------~k~~AL~~L~~Lve~iDn 166 (363)
..++++.+ +++.+++=....-.+.||+.+..+-|.+.-+. +....|--.-++|..-+.
T Consensus 17 ~e~~~~~~-------ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~ 89 (948)
T KOG1058|consen 17 GEPMSEDE-------IKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDS 89 (948)
T ss_pred ccccchHH-------HHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCC
Confidence 35566554 34566531122234678888888877664221 112233444455655554
Q ss_pred -hhhHHhcCCHH-HHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 017926 167 -ANDLSKLGGLS-VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (363)
Q Consensus 167 -An~l~~lGgl~-~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLi 244 (363)
..-++.|=.+- .+-.-|+|+|+-||-...+-|+++= .|+ +=...+|.+...|.+...-||+.|+.||-+|-
T Consensus 90 dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLk--E~E-----Llepl~p~IracleHrhsYVRrNAilaifsIy 162 (948)
T KOG1058|consen 90 DGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLK--EPE-----LLEPLMPSIRACLEHRHSYVRRNAILAIFSIY 162 (948)
T ss_pred CcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcC--cHH-----HhhhhHHHHHHHHhCcchhhhhhhheeehhHH
Confidence 44444431111 1124578899999999988888774 232 22357888889999988889999999999998
Q ss_pred cC
Q 017926 245 RN 246 (363)
Q Consensus 245 R~ 246 (363)
++
T Consensus 163 k~ 164 (948)
T KOG1058|consen 163 KN 164 (948)
T ss_pred hh
Confidence 76
No 236
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=62.58 E-value=2.2e+02 Score=30.33 Aligned_cols=130 Identities=21% Similarity=0.273 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHcccCCC--chhh--HHhcCCHHHHHHhcCC-------CCHHHHHHHHHHHHHHhccChHHH--HHHHH
Q 017926 148 EDSQRALQELLILVEPID--NAND--LSKLGGLSVLVGQLNH-------PDTDIRKISAWILGKASQNNPLVQ--KQVLE 214 (363)
Q Consensus 148 e~k~~AL~~L~~Lve~iD--nAn~--l~~lGgl~~Li~lL~s-------~~~~Ir~~Aa~~Lgt~aqNNp~~Q--~~~le 214 (363)
++|..||--...+|.+.| -++. +...=|++-+=++|.+ ++.-.+.-+..+|+..|+. |+.. +.++
T Consensus 26 ~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~-pElAsh~~~v- 103 (698)
T KOG2611|consen 26 EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV-PELASHEEMV- 103 (698)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-hhhccCHHHH-
Confidence 556666666666666543 3333 5555678888888864 2345677788888888874 3322 2232
Q ss_pred cCcHHHHHHhhcCCC-H--H----H---HHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhc--CCCccHHHHHHHHH
Q 017926 215 LGALSKLMKMVKSSF-V--E----E---AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG--NSSFEIRLHRKAVS 282 (363)
Q Consensus 215 ~G~lp~Ll~LL~s~~-~--~----v---~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~--s~~~~~klr~kA~~ 282 (363)
+.||.|+..+.... + + + ...++|+++ ++++++...+..||++.+.+.-. +.+.+..+..+...
T Consensus 104 -~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va----~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vll 178 (698)
T KOG2611|consen 104 -SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVA----TAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLL 178 (698)
T ss_pred -HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHh----cCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHH
Confidence 46999999997532 1 1 1 234444443 45889999999999999988754 33445555555444
Q ss_pred HH
Q 017926 283 LV 284 (363)
Q Consensus 283 lL 284 (363)
+.
T Consensus 179 l~ 180 (698)
T KOG2611|consen 179 LL 180 (698)
T ss_pred HH
Confidence 43
No 237
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.29 E-value=1.2e+02 Score=33.65 Aligned_cols=105 Identities=13% Similarity=0.036 Sum_probs=65.6
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHH
Q 017926 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (363)
Q Consensus 225 L~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~ 304 (363)
|.+.++...--||..|+++ |.....+.|.. - +..+|.++++...+|.||+..+-.|.. ..|+ .+.
T Consensus 120 L~srn~~fv~LAL~~I~ni--G~re~~ea~~~--D---I~KlLvS~~~~~~vkqkaALclL~L~r-----~spD---l~~ 184 (938)
T KOG1077|consen 120 LSSRNPTFVCLALHCIANI--GSREMAEAFAD--D---IPKLLVSGSSMDYVKQKAALCLLRLFR-----KSPD---LVN 184 (938)
T ss_pred hhcCCcHHHHHHHHHHHhh--ccHhHHHHhhh--h---hHHHHhCCcchHHHHHHHHHHHHHHHh-----cCcc---ccC
Confidence 3344555566788888887 33444444442 2 235666665567799999999999885 2333 233
Q ss_pred hCCcHHHHHHhccCCChhHHHHHHHHHHhhcccccCchhhhhH
Q 017926 305 DRFFLKSVVDLTASADLDLQEKVFLEHVFCGLVFCTCPCIVRG 347 (363)
Q Consensus 305 ~~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~~~~~~~~~~~r~ 347 (363)
-.+|..+++.+|...|..+.-.+..-+. ++..-.++.|.+
T Consensus 185 ~~~W~~riv~LL~D~~~gv~ta~~sLi~---~lvk~~p~~yk~ 224 (938)
T KOG1077|consen 185 PGEWAQRIVHLLDDQHMGVVTAATSLIE---ALVKKNPESYKT 224 (938)
T ss_pred hhhHHHHHHHHhCccccceeeehHHHHH---HHHHcCCHHHhh
Confidence 4589999999999877666655554444 223334555554
No 238
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=61.15 E-value=15 Score=40.87 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh-HHHHHHHHcCcHHHHHHhhc
Q 017926 148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVK 226 (363)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp-~~Q~~~le~G~lp~Ll~LL~ 226 (363)
|.|-...|.+...++.+-|...+.+ ..+.++..+.+.++.+|......+....+.++ .+-....-.+.+|.++...+
T Consensus 347 ekk~~l~d~l~~~~d~~~ns~~l~~--~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~ 424 (815)
T KOG1820|consen 347 EKKSELRDALLKALDAILNSTPLSK--MSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHIN 424 (815)
T ss_pred hccHHHHHHHHHHHHHHHhcccHHH--HHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhcc
Confidence 3334444444444444444444433 35677788899999999998888877777655 33333334578999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCC
Q 017926 227 SSFVEEAVKALYTVSSLIRNN 247 (363)
Q Consensus 227 s~~~~v~~kAL~ALSsLiR~~ 247 (363)
+.+.+||..|+.+++.+.|.+
T Consensus 425 D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 425 DTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred CCcHHHHHHHHHHHHHHHHHh
Confidence 989999999999999998864
No 239
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=60.54 E-value=1.2e+02 Score=32.74 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 232 EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 232 v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
+|..|+.|||-..-+- -+.|.......+|.+|+.+. |..+|-+|.|++.++-
T Consensus 503 vRsaAv~aLskf~ln~---~d~~~~~sv~~~lkRclnD~--DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 503 VRSAAVQALSKFALNI---SDVVSPQSVENALKRCLNDQ--DDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHHhccCc---cccccHHHHHHHHHHHhhcc--cHHHHHHHHHHHHhhh
Confidence 4667888887654331 12333344557889999886 6679999999999985
No 240
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=60.51 E-value=78 Score=34.82 Aligned_cols=51 Identities=25% Similarity=0.312 Sum_probs=43.8
Q ss_pred HHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 239 TVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 239 ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
+|.++.-+++.....|++.||...+..+++.- ....+++++..++.+++..
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~il~~l~n~~~~ 544 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKILGLLGNLAEV 544 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHHHHHHHHHHHH
Confidence 45567777889999999999999999999976 4567999999999999864
No 241
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=60.51 E-value=33 Score=30.49 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=20.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHH
Q 017926 176 LSVLVGQLNHPDTDIRKISAWILGKA 201 (363)
Q Consensus 176 l~~Li~lL~s~~~~Ir~~Aa~~Lgt~ 201 (363)
+.+||.+|.++++++...|+.+|.+-
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 68999999999999999999998754
No 242
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=60.36 E-value=73 Score=31.94 Aligned_cols=92 Identities=25% Similarity=0.270 Sum_probs=62.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcC-CCCHHHHHHH-HHHHHHHhccChHHHH
Q 017926 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKIS-AWILGKASQNNPLVQK 210 (363)
Q Consensus 133 mk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~-s~~~~Ir~~A-a~~Lgt~aqNNp~~Q~ 210 (363)
|.-+++.+. ++.+.--|..++-.|..-+-+.+..+.|...|....+++.+. .++..+-..+ +-++..+.+..+ ...
T Consensus 23 v~ylld~l~-~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLE-SSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcc-cCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 334455555 455667788888889998889999999999999999999984 4444244444 444455555443 333
Q ss_pred HHHHcCcHHHHHHhhc
Q 017926 211 QVLELGALSKLMKMVK 226 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~ 226 (363)
.+.+.+.+..+++|+.
T Consensus 101 l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhchhHHHHHHHHhc
Confidence 3445566777788887
No 243
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.21 E-value=95 Score=35.24 Aligned_cols=98 Identities=11% Similarity=0.141 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHHHhc----cChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc-CCcccHHHHHhcCcHH
Q 017926 187 DTDIRKISAWILGKASQ----NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR-NNLAGQEMFYVEAGDL 261 (363)
Q Consensus 187 ~~~Ir~~Aa~~Lgt~aq----NNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR-~~~~a~~~f~~~gG~~ 261 (363)
++--+.-|..++|+++. +.| . +..+++=.++++.-.++++.--+|.+|+|-++-... +++. ... -...+.
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~-~-~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d-~~~--l~~ale 505 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSP-Y-KSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD-PNN--LSEALE 505 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCc-h-HHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC-hHH--HHHHHH
Confidence 45556778888888873 222 1 112333345566666677666679999999999873 3332 222 234667
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 262 MLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 262 ~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
....+|..++ +..||..|+.++..+...
T Consensus 506 ~t~~~l~~d~-~lPV~VeAalALq~fI~~ 533 (1010)
T KOG1991|consen 506 LTHNCLLNDN-ELPVRVEAALALQSFISN 533 (1010)
T ss_pred HHHHHhccCC-cCchhhHHHHHHHHHHhc
Confidence 7788888442 455899999999999974
No 244
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=60.21 E-value=1e+02 Score=31.98 Aligned_cols=82 Identities=18% Similarity=0.131 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCH-------H-HHHHHHHHHHHHhcCCcccHHHHHhc
Q 017926 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-------E-EAVKALYTVSSLIRNNLAGQEMFYVE 257 (363)
Q Consensus 186 ~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~-------~-v~~kAL~ALSsLiR~~~~a~~~f~~~ 257 (363)
++..+-..|..||++++-+.+.+|+.+++....-.+++.+...-. + .-.+.++-++.+=. ..-.+.+++.
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~--~~Rsql~~~l 186 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALET--DHRSQLIAEL 186 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhH--HHHHHHHHHh
Confidence 356788999999999999999999999999888888877754211 1 23567777777632 1224556679
Q ss_pred CcHHHHHHhhcC
Q 017926 258 AGDLMLQDILGN 269 (363)
Q Consensus 258 gG~~~L~~lL~s 269 (363)
+|+..+...+.+
T Consensus 187 ~Gl~~lt~~led 198 (532)
T KOG4464|consen 187 LGLELLTNWLED 198 (532)
T ss_pred cccHHHHHHhhc
Confidence 999999999865
No 245
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.16 E-value=29 Score=38.22 Aligned_cols=152 Identities=19% Similarity=0.182 Sum_probs=78.7
Q ss_pred CCCHHHHHHHHHHHhhcCCC--------CHHHHHHHHHHHHHcccCCCchhhHHhc------------------CCHHHH
Q 017926 126 TPSDAQLIQIAIDDLNNSTL--------SLEDSQRALQELLILVEPIDNANDLSKL------------------GGLSVL 179 (363)
Q Consensus 126 ~~~d~~lmk~al~~L~~~~~--------s~e~k~~AL~~L~~Lve~iDnAn~l~~l------------------Ggl~~L 179 (363)
.||-++++...+..=.+++- -.-+.+.|++-|...++++.+-++...+ .-+..+
T Consensus 169 ~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i 248 (948)
T KOG1058|consen 169 IPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCI 248 (948)
T ss_pred cCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHH
Confidence 46666666555543222220 0123456777777777666544433322 223344
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCcccHHHHHhcC
Q 017926 180 VGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEA 258 (363)
Q Consensus 180 i~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~-~~v~~kAL~ALSsLiR~~~~a~~~f~~~g 258 (363)
..+|.++++.++..||..|-++. |+|..-.. +-..+++++...+ ..++.-.+--|+.+-..+... +. |
T Consensus 249 ~~lL~stssaV~fEaa~tlv~lS-~~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~i---l~--~ 317 (948)
T KOG1058|consen 249 YNLLSSTSSAVIFEAAGTLVTLS-NDPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEKI---LQ--G 317 (948)
T ss_pred HHHHhcCCchhhhhhcceEEEcc-CCHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHH---HH--H
Confidence 45666666666666666666554 34443332 2345555554433 234433444444442222211 11 2
Q ss_pred cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 259 G~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
-+--++++|.++ +..+|+|+..+.-+|++.
T Consensus 318 l~mDvLrvLss~--dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 318 LIMDVLRVLSSP--DLDVRSKTLDIALDLVSS 347 (948)
T ss_pred HHHHHHHHcCcc--cccHHHHHHHHHHhhhhh
Confidence 222345566776 667999999999999864
No 246
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.81 E-value=3.4e+02 Score=32.67 Aligned_cols=127 Identities=20% Similarity=0.125 Sum_probs=72.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh----cCCCHHHH---HHHHHHHHHHhc-CCc
Q 017926 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV----KSSFVEEA---VKALYTVSSLIR-NNL 248 (363)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL----~s~~~~v~---~kAL~ALSsLiR-~~~ 248 (363)
.-|+.-|.+..=-+|+.+|.+|..+.|..|..|. .+ -+|.++..+ ++=.+.|| .++..+||.+|- -..
T Consensus 1042 ~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~--~e--~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d 1117 (1702)
T KOG0915|consen 1042 DELLVNLTSKEWRVREASCLALADLLQGRPFDQV--KE--KLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICD 1117 (1702)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3444555667778999999999999998775443 33 356665443 22223454 478888887543 222
Q ss_pred c----cHHHHHhcCcHHHHHHhhcCC---CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccC
Q 017926 249 A----GQEMFYVEAGDLMLQDILGNS---SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 318 (363)
Q Consensus 249 ~----a~~~f~~~gG~~~L~~lL~s~---~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~ 318 (363)
. .-++ .+..+..+|-++ ++-..+|+-+..++.+|+... .....+.+ ..+++.|.+....
T Consensus 1118 ~~~~~~~~~-----~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kss----g~~lkP~~--~~LIp~ll~~~s~ 1183 (1702)
T KOG0915|consen 1118 VTNGAKGKE-----ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSS----GKELKPHF--PKLIPLLLNAYSE 1183 (1702)
T ss_pred cCCcccHHH-----HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhc----hhhhcchh--hHHHHHHHHHccc
Confidence 2 1112 233444443322 124568888999999998742 22333332 2345555555443
No 247
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=59.40 E-value=49 Score=31.86 Aligned_cols=74 Identities=12% Similarity=0.103 Sum_probs=52.3
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccH-HHHHhcCcHHHHHHh----hc------CCCccHHHHHHHHHHH
Q 017926 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ-EMFYVEAGDLMLQDI----LG------NSSFEIRLHRKAVSLV 284 (363)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~-~~f~~~gG~~~L~~l----L~------s~~~~~klr~kA~~lL 284 (363)
=.+|.++.++++.++++|.+.+..|..++.+.+... ..+.+.|-.+++.+. +. .......+-..+--++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 368999999999999999999999999999866544 336666655544444 43 1112455666677777
Q ss_pred HHHhh
Q 017926 285 GDLAK 289 (363)
Q Consensus 285 ~~L~~ 289 (363)
..|+.
T Consensus 199 ~~L~~ 203 (282)
T PF10521_consen 199 LSLLK 203 (282)
T ss_pred HHHHH
Confidence 77764
No 248
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=59.30 E-value=95 Score=25.62 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=46.3
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHH-hhcCCCHHH-HHHHHHHHHHHhcCC
Q 017926 176 LSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEE-AVKALYTVSSLIRNN 247 (363)
Q Consensus 176 l~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~-LL~s~~~~v-~~kAL~ALSsLiR~~ 247 (363)
+|.+...|. +..++.|..+-.+++.++...|-..+ .+..+++ ++++..... ...++-+|..++++.
T Consensus 8 LP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~------~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 8 LPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDE------VLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHH------HHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 677788887 78899999999999999987664333 3344443 333322222 478999999998765
No 249
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=58.25 E-value=1.8e+02 Score=28.96 Aligned_cols=125 Identities=15% Similarity=0.113 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCC----------------------CHHHHHHHHHHHHHcccCCCchhhH
Q 017926 113 RQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTL----------------------SLEDSQRALQELLILVEPIDNANDL 170 (363)
Q Consensus 113 r~~~Lkeal~~l~~~~d~~lmk~al~~L~~~~~----------------------s~e~k~~AL~~L~~Lve~iDnAn~l 170 (363)
-+.+.+++.+.+.+ ++....+.+++.|+.... +.......+.-+.-|++|...--+.
T Consensus 176 lq~yf~~It~a~~~-~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~ 254 (343)
T cd08050 176 LQLYFEEITEALVG-SNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEP 254 (343)
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHH
Confidence 34555666665544 446667788888865431 1111222333334444443322233
Q ss_pred HhcCCHHHHHHhcCC----------CCHHHHHHHHHHHHHHhcc----ChHHHHHHHHcCcHHHHHHhhcCCCH--HHHH
Q 017926 171 SKLGGLSVLVGQLNH----------PDTDIRKISAWILGKASQN----NPLVQKQVLELGALSKLMKMVKSSFV--EEAV 234 (363)
Q Consensus 171 ~~lGgl~~Li~lL~s----------~~~~Ir~~Aa~~Lgt~aqN----Np~~Q~~~le~G~lp~Ll~LL~s~~~--~v~~ 234 (363)
.-.-.+|+++.||-+ ++-.+|..||.+|+.++.. ++..|..+ +..|.+.+.++.. ....
T Consensus 255 Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri-----~~tl~k~l~d~~~~~~~~Y 329 (343)
T cd08050 255 YLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRI-----TRTLLKALLDPKKPLTTHY 329 (343)
T ss_pred hHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH-----HHHHHHHHcCCCCCcchhh
Confidence 334478999988732 2248999999999999863 33344443 3356655555432 3356
Q ss_pred HHHHHHHHH
Q 017926 235 KALYTVSSL 243 (363)
Q Consensus 235 kAL~ALSsL 243 (363)
-|+..|+.+
T Consensus 330 GAi~GL~~l 338 (343)
T cd08050 330 GAIVGLSAL 338 (343)
T ss_pred HHHHHHHHh
Confidence 677777665
No 250
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=57.66 E-value=64 Score=36.93 Aligned_cols=58 Identities=24% Similarity=0.236 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 017926 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (363)
Q Consensus 185 s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~ 246 (363)
|=++.+|+.||++|..+++-.|+ .+..+.+|+|++...+.+...+.-+.-|.+.++-+
T Consensus 555 HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 555 HWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred cccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence 45899999999999999886664 34557899999999988877776666666665543
No 251
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=56.94 E-value=80 Score=34.52 Aligned_cols=57 Identities=14% Similarity=0.007 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 017926 231 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 231 ~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~ 288 (363)
..|..+|.-||.+||..|+....+.+..-+.-|+.||..+. +..+-.-|+.+|.-|.
T Consensus 83 ~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~-~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 83 SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDT-SITVVSSALLVLIMLL 139 (668)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcc-cHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999998874 4556566666666554
No 252
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.87 E-value=40 Score=35.27 Aligned_cols=77 Identities=18% Similarity=0.160 Sum_probs=59.7
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC--ChhHHHHHHHHHHhhc
Q 017926 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKVFLEHVFCG 335 (363)
Q Consensus 258 gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~~lqE~al~aL~~~~ 335 (363)
..+..|.+-+++. +.+++.-|+.+|-.++. +++..+...+.+.+++..+|.+.+.. +..+|++++..|..+.
T Consensus 38 eAvralkKRi~~k--~s~vq~lALtlLE~cvk----NCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 38 EAVRALKKRLNSK--NSKVQLLALTLLETCVK----NCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHHhccC--CcHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 3455666767776 34788899998887776 46777888889999999999999865 8899999999998554
Q ss_pred ccccCch
Q 017926 336 LVFCTCP 342 (363)
Q Consensus 336 ~~~~~~~ 342 (363)
- .+|+
T Consensus 112 ~--af~~ 116 (470)
T KOG1087|consen 112 Q--AFCG 116 (470)
T ss_pred H--HccC
Confidence 4 3355
No 253
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=55.77 E-value=1.9e+02 Score=28.58 Aligned_cols=104 Identities=17% Similarity=0.115 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHHhccChHHHHHHHHc--C----------cHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcCCc
Q 017926 186 PDTDIRKISAWILGKASQNNPLVQKQVLEL--G----------ALSKLMKMVKSS-----FVEEAVKALYTVSSLIRNNL 248 (363)
Q Consensus 186 ~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~--G----------~lp~Ll~LL~s~-----~~~v~~kAL~ALSsLiR~~~ 248 (363)
.++---+.|+.++..+..+|+.+++.+++- | .|+.+..+|... ++.++.--|.-|+.-+-++|
T Consensus 109 ~dpy~~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p 188 (312)
T PF04869_consen 109 LDPYRCWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECP 188 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-H
T ss_pred CCHHHHHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCH
Confidence 355556899999999999999999988654 2 456666666542 34456677888899999999
Q ss_pred ccHHHHHhcC-cHHHHHHhh-cCCCccHHHHHHHHHHHHHHhh
Q 017926 249 AGQEMFYVEA-GDLMLQDIL-GNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 249 ~a~~~f~~~g-G~~~L~~lL-~s~~~~~klr~kA~~lL~~L~~ 289 (363)
.+.+.|...+ .++.|+... +++..+.-+|-=++++|.-...
T Consensus 189 ~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 189 DAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 9999999986 689999975 3444577788888888875543
No 254
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=55.72 E-value=45 Score=35.17 Aligned_cols=106 Identities=18% Similarity=0.170 Sum_probs=66.2
Q ss_pred CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH----hcCCcc---cHHHHHh
Q 017926 184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL----IRNNLA---GQEMFYV 256 (363)
Q Consensus 184 ~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsL----iR~~~~---a~~~f~~ 256 (363)
.+.+.-++..|.+.++-.+=..---|+...-.++...++..+.+..-..|.|+.|++|+| +-+-|. .+..|..
T Consensus 401 d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg 480 (728)
T KOG4535|consen 401 DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG 480 (728)
T ss_pred chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH
Confidence 344555777777777766653333344444556677777777776667899999999985 344444 2333332
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 257 ~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
.--...+.....++....|++-++...+.++..
T Consensus 481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 222233333344444567899999999999874
No 255
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.39 E-value=1.2e+02 Score=35.24 Aligned_cols=111 Identities=14% Similarity=0.077 Sum_probs=73.0
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcc---ChHHHHHH--HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKASQN---NPLVQKQV--LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN---Np~~Q~~~--le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~ 249 (363)
-+..++.+|++.+-.+|-.-..++|+++-. +++.-... +..-.+..|..=+.+-+.-+|.|++.-...|++.+..
T Consensus 313 ~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~ 392 (1251)
T KOG0414|consen 313 QLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSI 392 (1251)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCC
Confidence 345567788888999999988888888742 22211111 1112556666666666788999999999999986533
Q ss_pred cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 250 a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
-...+- ..+...+..+.+. +.-||++|+.++..+..
T Consensus 393 p~~~~~--eV~~la~grl~Dk--SslVRk~Ai~Ll~~~L~ 428 (1251)
T KOG0414|consen 393 PLGSRT--EVLELAIGRLEDK--SSLVRKNAIQLLSSLLD 428 (1251)
T ss_pred CccHHH--HHHHHHhcccccc--cHHHHHHHHHHHHHHHh
Confidence 221111 2334455556665 45699999999999875
No 256
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=55.37 E-value=47 Score=36.56 Aligned_cols=134 Identities=12% Similarity=0.118 Sum_probs=89.5
Q ss_pred cCCHHHHHHhc-CC----CCHHHHHHHHHHHHHHhc-cChHHHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhc
Q 017926 173 LGGLSVLVGQL-NH----PDTDIRKISAWILGKASQ-NNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIR 245 (363)
Q Consensus 173 lGgl~~Li~lL-~s----~~~~Ir~~Aa~~Lgt~aq-NNp~~Q~~~le~G~lp~Ll~LL~-s~~~~v~~kAL~ALSsLiR 245 (363)
+|-+.|++.-+ .+ ++++++..|.-+|..+.- .+..|-+ -+|.|+..+. ++.+.+|..|+-+++-+.-
T Consensus 890 Ls~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e------hlpllIt~mek~p~P~IR~NaVvglgD~~v 963 (1128)
T COG5098 890 LSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE------HLPLLITSMEKHPIPRIRANAVVGLGDFLV 963 (1128)
T ss_pred HhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHhhCCCcceeccceeeccccce
Confidence 45677777543 33 689999999888876543 4444443 3899999988 5567788899988887654
Q ss_pred CCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHH
Q 017926 246 NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQE 325 (363)
Q Consensus 246 ~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE 325 (363)
- ...|++.+.--+..+ |.+. +..+|+.+...++.|... ..+.-.|-++.++.+|..+|..+.+
T Consensus 964 c----fN~~~de~t~yLyrr-L~De--~~~V~rtclmti~fLila----------gq~KVKGqlg~ma~~L~deda~Isd 1026 (1128)
T COG5098 964 C----FNTTADEHTHYLYRR-LGDE--DADVRRTCLMTIHFLILA----------GQLKVKGQLGKMALLLTDEDAEISD 1026 (1128)
T ss_pred e----hhhhhHHHHHHHHHH-hcch--hhHHHHHHHHHHHHHHHc----------cceeeccchhhhHhhccCCcchHHH
Confidence 3 334555444334444 4443 445888888888888741 1233467788888888888777776
Q ss_pred HHHH
Q 017926 326 KVFL 329 (363)
Q Consensus 326 ~al~ 329 (363)
.|-.
T Consensus 1027 mar~ 1030 (1128)
T COG5098 1027 MARH 1030 (1128)
T ss_pred HHHH
Confidence 6544
No 257
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=55.09 E-value=1.2e+02 Score=30.39 Aligned_cols=137 Identities=15% Similarity=0.091 Sum_probs=85.1
Q ss_pred hcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhccChHHHHHHHHc-CcHHHHHHh-hcC---C--C---HHHHHHHHHHH
Q 017926 172 KLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKM-VKS---S--F---VEEAVKALYTV 240 (363)
Q Consensus 172 ~lGgl~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~-G~lp~Ll~L-L~s---~--~---~~v~~kAL~AL 240 (363)
+.+-++.|..+=. ...+++|..+...+.++.+.. ++.++.+ .+..++++| +.. . . ...-+.-++.|
T Consensus 7 ~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~---~~plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL~~l 83 (353)
T PF10257_consen 7 QHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQS---QQPLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELLNTL 83 (353)
T ss_pred HhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhc---ccccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHHHHH
Confidence 3445666766643 467999999999999998752 3334443 566677777 432 1 1 12246899999
Q ss_pred HHHhcCCcccHHHHHhcCc--------------------------HHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhc
Q 017926 241 SSLIRNNLAGQEMFYVEAG--------------------------DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 294 (363)
Q Consensus 241 SsLiR~~~~a~~~f~~~gG--------------------------~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~ 294 (363)
+..+|.+|.-...|.+.+. +..|+..+++.+ ++-.+|.-.+-.++.-. .
T Consensus 84 c~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~eg---~ig~~Are~LLll~~l~--~ 158 (353)
T PF10257_consen 84 CSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSEG---RIGDFAREGLLLLMSLA--S 158 (353)
T ss_pred HHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcCc---HHHHHHHHHHHHHHhCC--C
Confidence 9999999988888886543 356777777763 23334443333333210 1
Q ss_pred CCCCcchhHHh-CCcHHHHHHhc
Q 017926 295 MHKVEPPLFRD-RFFLKSVVDLT 316 (363)
Q Consensus 295 ~~~~~~~~l~~-~g~v~~Lv~lL 316 (363)
.++.....+++ ..+++.+..-|
T Consensus 159 ~~~~~~~~i~~~S~fc~~latgL 181 (353)
T PF10257_consen 159 EDPALAQYIVEHSDFCPVLATGL 181 (353)
T ss_pred CCcHHHHHHHHcchhHHHHHHHH
Confidence 24555566666 56776666554
No 258
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=54.97 E-value=71 Score=26.09 Aligned_cols=72 Identities=18% Similarity=0.114 Sum_probs=47.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc-cHHHHHhcCcHHHHHHh----hcCCCccHHHHHHHHHHHHHHh
Q 017926 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDI----LGNSSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~-a~~~f~~~gG~~~L~~l----L~s~~~~~klr~kA~~lL~~L~ 288 (363)
++..|.+-|.+.+..++.+||+.|-.+++|..+ ....|....-..-++.. ......+..+|.|+..++...+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 456667777777888899999999999998654 34444444322223221 1122346789999998887653
No 259
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=54.56 E-value=1.2e+02 Score=25.89 Aligned_cols=86 Identities=14% Similarity=0.087 Sum_probs=53.5
Q ss_pred HHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcC--cHHHHHHhh------cC
Q 017926 198 LGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA--GDLMLQDIL------GN 269 (363)
Q Consensus 198 Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~g--G~~~L~~lL------~s 269 (363)
|+.++.+++..... .+..|.+=|++.+.-|+.|+|.-|-.+|++.++......+.+ .+..+...= +.
T Consensus 25 ia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~G 99 (122)
T cd03572 25 IAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKG 99 (122)
T ss_pred HHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccC
Confidence 44445455433333 355677778887788999999999999998665544444433 233333331 22
Q ss_pred CCccHHHHHHHHHHHHHHh
Q 017926 270 SSFEIRLHRKAVSLVGDLA 288 (363)
Q Consensus 270 ~~~~~klr~kA~~lL~~L~ 288 (363)
+.....||.+|--++..|.
T Consensus 100 d~~~~~VR~~A~El~~~if 118 (122)
T cd03572 100 DSLNEKVREEAQELIKAIF 118 (122)
T ss_pred cchhHHHHHHHHHHHHHHh
Confidence 2345678888877777665
No 260
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=54.42 E-value=54 Score=32.40 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHcccCCCchhhHHhcC--CHHHHHHhcCCC---CHHHHHHHHHHHHHHhccChHHHHHHHH------cC
Q 017926 148 EDSQRALQELLILVEPIDNANDLSKLG--GLSVLVGQLNHP---DTDIRKISAWILGKASQNNPLVQKQVLE------LG 216 (363)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnAn~l~~lG--gl~~Li~lL~s~---~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le------~G 216 (363)
..|+.|+-.+.+..-+-+....|...+ .+.-|++++..+ ...+|..|..+|..+++..+.+.+.+-. +|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 446777777777666667777777777 888889998753 5889999999999999998888775433 36
Q ss_pred cHHHHHH
Q 017926 217 ALSKLMK 223 (363)
Q Consensus 217 ~lp~Ll~ 223 (363)
.++.+++
T Consensus 317 iL~~llR 323 (329)
T PF06012_consen 317 ILPQLLR 323 (329)
T ss_pred cHHHHHH
Confidence 6766664
No 261
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=53.20 E-value=32 Score=28.73 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=33.4
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~ 215 (363)
|++.|+..|..++++|...|..+|-.+++.+ .+.+.++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHHc
Confidence 6889999999999999999999999999876 555555543
No 262
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.11 E-value=13 Score=37.66 Aligned_cols=62 Identities=19% Similarity=0.194 Sum_probs=49.1
Q ss_pred HHHHHHcccCC-CchhhHHhcCCHHHHHHhc--CCCCHHHHHHHHHHHHHHhccChHHHHHHHHc
Q 017926 154 LQELLILVEPI-DNANDLSKLGGLSVLVGQL--NHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (363)
Q Consensus 154 L~~L~~Lve~i-DnAn~l~~lGgl~~Li~lL--~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~ 215 (363)
.+-+..+|... ++...+..+||++.++.-. ...+|=||+....|+..+.|||.+.|+.+-+.
T Consensus 377 ir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 377 IRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 34455566554 5556666799999999755 45789999999999999999999999988665
No 263
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=52.32 E-value=1.4e+02 Score=30.11 Aligned_cols=94 Identities=16% Similarity=0.033 Sum_probs=57.5
Q ss_pred cCCCCHHHHHHHHHHHHHcccCCCch-------------hhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHH
Q 017926 142 NSTLSLEDSQRALQELLILVEPIDNA-------------NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV 208 (363)
Q Consensus 142 ~~~~s~e~k~~AL~~L~~Lve~iDnA-------------n~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~ 208 (363)
++..+...|..|+--+.-+....... .+|...-.+|-|. -=.+..|-+|..|++.+.+-..-=|+.
T Consensus 264 ~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~ 342 (370)
T PF08506_consen 264 NPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE 342 (370)
T ss_dssp -TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH
T ss_pred CCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH
Confidence 45556678888888777777665432 2222222222222 111467889999999999988654432
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHH
Q 017926 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTV 240 (363)
Q Consensus 209 Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~AL 240 (363)
.+ .+.+|.++..|.+++.-|+.-|.+||
T Consensus 343 --~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 343 --QL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp --HH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred --HH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 22 25899999999998887888777765
No 264
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=52.26 E-value=60 Score=34.05 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=60.9
Q ss_pred hHHhcCCHHHHH-H---hcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 017926 169 DLSKLGGLSVLV-G---QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (363)
Q Consensus 169 ~l~~lGgl~~Li-~---lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLi 244 (363)
.+.-.||||.+- . --.+.+..+|..+-.+||.+++..|..=. -+.+.+..|.+-|..++.+++...--|||+++
T Consensus 365 ~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 365 PVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLA 442 (501)
T ss_pred HHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHH
Confidence 444467777771 0 12346899999999999999999886521 24578888998888888899998888999988
Q ss_pred cCCcccHH
Q 017926 245 RNNLAGQE 252 (363)
Q Consensus 245 R~~~~a~~ 252 (363)
.++.....
T Consensus 443 ~af~~~~~ 450 (501)
T PF13001_consen 443 PAFKDLPD 450 (501)
T ss_pred HHHhcccc
Confidence 77665443
No 265
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=51.71 E-value=20 Score=30.00 Aligned_cols=39 Identities=13% Similarity=0.036 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccH
Q 017926 235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEI 274 (363)
Q Consensus 235 kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~ 274 (363)
..+..++.+.. +|.-...|++.|+++.|+.+|.++++|+
T Consensus 65 ~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DI 103 (108)
T PF08216_consen 65 EEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDI 103 (108)
T ss_pred HHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcce
Confidence 55666666654 6888999999999999999999998765
No 266
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=51.42 E-value=51 Score=36.48 Aligned_cols=89 Identities=8% Similarity=0.093 Sum_probs=61.2
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHH
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f 254 (363)
.++.++..++++.-=+|.+||..+++.... ..+..+-..+.......+++..-+|+..|.-|+.++++|. .....
T Consensus 461 iv~hv~P~f~s~ygfL~Srace~is~~eeD---fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~--q~h~k 535 (970)
T COG5656 461 IVNHVIPAFRSNYGFLKSRACEFISTIEED---FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE--QSHEK 535 (970)
T ss_pred HHHHhhHhhcCcccchHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch--hhhHH
Confidence 456666777888888999999999998432 2222333345566677788867789999999999999986 33444
Q ss_pred HhcCcHHHHHHhhc
Q 017926 255 YVEAGDLMLQDILG 268 (363)
Q Consensus 255 ~~~gG~~~L~~lL~ 268 (363)
..++....+..+|+
T Consensus 536 ~sahVp~tmekLLs 549 (970)
T COG5656 536 FSAHVPETMEKLLS 549 (970)
T ss_pred HHhhhhHHHHHHHH
Confidence 44555555555543
No 267
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.24 E-value=64 Score=35.90 Aligned_cols=101 Identities=14% Similarity=0.151 Sum_probs=70.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhc
Q 017926 178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (363)
Q Consensus 178 ~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~ 257 (363)
-+..++++.+-++-..|..+||.|++++-.+... ++.-|+.++++.+..|...++-.|--++..+|.-...
T Consensus 396 E~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~t-----CL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~---- 466 (968)
T KOG1060|consen 396 ELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDT-----CLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE---- 466 (968)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhH-----HHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH----
Confidence 3344566777789999999999999988766554 5778999999988888888888888898876653222
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 258 gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
-+..|..++.+-. -..-|.-..|++.-.|.
T Consensus 467 -ii~~La~lldti~-vp~ARA~IiWLige~~e 496 (968)
T KOG1060|consen 467 -ILFQLARLLDTIL-VPAARAGIIWLIGEYCE 496 (968)
T ss_pred -HHHHHHHHhhhhh-hhhhhceeeeeehhhhh
Confidence 2344555554332 22345566788777764
No 268
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=50.10 E-value=2.6e+02 Score=27.37 Aligned_cols=57 Identities=11% Similarity=0.065 Sum_probs=31.0
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 260 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 260 ~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
++-|...|......+-+|..|+.+|..++. ...++.|.+.+..++.-++|-+..||.
T Consensus 220 i~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------------e~~~~vL~e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 220 IPSLIKVLLDETEHPMVRHEAAEALGAIAD----------------EDCVEVLKEYLGDEERVVRESCEVALD 276 (289)
T ss_pred hHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------------HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 444444444433344556666666665552 334555666666666666665555544
No 269
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=49.78 E-value=1.2e+02 Score=31.26 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=62.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHH-HHHH
Q 017926 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV-QKQV 212 (363)
Q Consensus 134 k~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~-Q~~~ 212 (363)
...+...+++..+.|+=...|+....+-++.|++.+ ++..|.+-|++.++.|..+|..+++.|+.|+.+. +..|
T Consensus 10 e~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd-----~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EV 84 (462)
T KOG2199|consen 10 EQDVEKATDEKNTSENWSLILDVCDKVGSDPDGGKD-----CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEV 84 (462)
T ss_pred HHHHHHhcCcccccccHHHHHHHHHhhcCCCcccHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHH
Confidence 344455555555666666666655555556676665 4556778899999999999999999999986533 3334
Q ss_pred HHcCcHHHHHHhhcC
Q 017926 213 LELGALSKLMKMVKS 227 (363)
Q Consensus 213 le~G~lp~Ll~LL~s 227 (363)
-.......|..++.+
T Consensus 85 sSr~F~~el~al~~~ 99 (462)
T KOG2199|consen 85 SSRDFTTELRALIES 99 (462)
T ss_pred hhhhHHHHHHHHHhh
Confidence 455777888888885
No 270
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=49.45 E-value=2e+02 Score=28.39 Aligned_cols=135 Identities=14% Similarity=0.067 Sum_probs=79.6
Q ss_pred HHHHHHHcCcHHHHHHhhcC-------CC--------------H--HHHHHHHHHHHHHhcCCccc--------------
Q 017926 208 VQKQVLELGALSKLMKMVKS-------SF--------------V--EEAVKALYTVSSLIRNNLAG-------------- 250 (363)
Q Consensus 208 ~Q~~~le~G~lp~Ll~LL~s-------~~--------------~--~v~~kAL~ALSsLiR~~~~a-------------- 250 (363)
+|..+.+.|.+|.|-++++. .+ + .++..-|..+-+++.++...
T Consensus 1 vq~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~ 80 (303)
T PF12463_consen 1 VQTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVES 80 (303)
T ss_pred ChHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccc
Confidence 47888999999999988852 11 1 25666777777777643211
Q ss_pred -----HHHHHh--cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCC-CcchhHHhCCcHHHHHHhccCCChh
Q 017926 251 -----QEMFYV--EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK-VEPPLFRDRFFLKSVVDLTASADLD 322 (363)
Q Consensus 251 -----~~~f~~--~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~-~~~~~l~~~g~v~~Lv~lL~~~d~~ 322 (363)
.....+ .|=+..|++.+.....+.+.|---+.++.++... .++ ..+..+.+.|+++.+++.+-++...
T Consensus 81 ~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg----~t~~~~Q~fl~~~GLLe~lv~eil~~~~~ 156 (303)
T PF12463_consen 81 ELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRG----ATSYADQAFLAERGLLEHLVSEILSDGCM 156 (303)
T ss_pred cccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcC----CCcHHHHHHHHhcchHHHHHHHHhcCccc
Confidence 111111 2334556666655555666777777777777752 344 4556778999999999998866333
Q ss_pred HHHHHHHHHHhhcccccCchhhhh
Q 017926 323 LQEKVFLEHVFCGLVFCTCPCIVR 346 (363)
Q Consensus 323 lqE~al~aL~~~~~~~~~~~~~~r 346 (363)
.++-.-....++|-+-..+...++
T Consensus 157 ~~~v~Q~~FDLLGELiK~n~~~f~ 180 (303)
T PF12463_consen 157 SQEVLQSNFDLLGELIKFNRDAFQ 180 (303)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHH
Confidence 333222333333343344444443
No 271
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=49.41 E-value=58 Score=37.10 Aligned_cols=68 Identities=9% Similarity=0.078 Sum_probs=47.9
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
-.+|.+-.-|.+++.-+|+.++.-|+.++. ..|++-+|.-.+.-++..-..+..+|.-|-|+++.+..
T Consensus 1006 ~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq------~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1006 RYIPMIAASLCDPSVIVRRQTIILLARLLQ------FGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred HhhHHHHHHhcCchHHHHHHHHHHHHHHHh------hhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 467888888888777778888888888763 45667777654444433222256788999999998875
No 272
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.09 E-value=2.9e+02 Score=30.68 Aligned_cols=126 Identities=13% Similarity=0.083 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcH--HHHHHh
Q 017926 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD--LMLQDI 266 (363)
Q Consensus 189 ~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~--~~L~~l 266 (363)
-|-..++..+..+-|-.+.. + + =.|.+..|++-..+.+..||-..+.-|.-+.-++..--+-+. +++ .++.++
T Consensus 61 RIl~fla~fv~sl~q~d~e~-D-l-V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf--n~l~e~l~~Rl 135 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEE-D-L-VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF--NKLNEKLLIRL 135 (892)
T ss_pred HHHHHHHHHHHhhhccCchh-h-H-HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH--HHHHHHHHHHH
Confidence 34455556666555433221 1 2 236677888888888888998888877777653322222222 232 344454
Q ss_pred hcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHHHHHHHHHH
Q 017926 267 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKVFLEHV 332 (363)
Q Consensus 267 L~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~aL~ 332 (363)
... .+.+|+.|+++|+.+=.. ..++ +..++..++.+++++ ++++|-.|+..+.
T Consensus 136 ~Dr---ep~VRiqAv~aLsrlQ~d---~~de-------e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 136 KDR---EPNVRIQAVLALSRLQGD---PKDE-------ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred hcc---CchHHHHHHHHHHHHhcC---CCCC-------cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 443 345899999999888521 1121 245778889999986 8999999999887
No 273
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=48.64 E-value=2.3e+02 Score=33.99 Aligned_cols=133 Identities=17% Similarity=0.141 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhc---cChHHHHHHHHc--CcHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCCccc----------
Q 017926 190 IRKISAWILGKASQ---NNPLVQKQVLEL--GALSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLAG---------- 250 (363)
Q Consensus 190 Ir~~Aa~~Lgt~aq---NNp~~Q~~~le~--G~lp~Ll~LL~s~----~~~v~~kAL~ALSsLiR~~~~a---------- 250 (363)
.-..|..|||.++. +|-+.-..++.. +.++.+=.-..++ ..+...+.++.++-++|++.-.
T Consensus 1137 ~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~ 1216 (1692)
T KOG1020|consen 1137 TVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFL 1216 (1692)
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccch
Confidence 34567788888886 444443333321 2222222221121 1234578999999999964321
Q ss_pred -HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCC--hhHHHHH
Q 017926 251 -QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD--LDLQEKV 327 (363)
Q Consensus 251 -~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d--~~lqE~a 327 (363)
.-.++..+-+.+|..+.+.. +..+|++|+-.++.+|.. + ...+.++.+...+-+.|...+ ....-.+
T Consensus 1217 ~~~~~~~e~v~~lL~~f~k~~--~~~lR~~al~~Lg~~ci~-----h---p~l~~~~~v~nly~~ila~~n~~~~~ki~~ 1286 (1692)
T KOG1020|consen 1217 QEGETLKEKVLILLMYFSKDK--DGELRRKALINLGFICIQ-----H---PSLFTSREVLNLYDEILADDNSDIKSKIQL 1286 (1692)
T ss_pred hhhhhHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhh-----C---chhhhhHHHHHHHHHHHhhhcccHHHHHHH
Confidence 11233445556666666654 577999999999999963 2 234555566666666666553 3334455
Q ss_pred HHHHH
Q 017926 328 FLEHV 332 (363)
Q Consensus 328 l~aL~ 332 (363)
+..++
T Consensus 1287 l~n~~ 1291 (1692)
T KOG1020|consen 1287 LQNLE 1291 (1692)
T ss_pred HHHHH
Confidence 55554
No 274
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=47.35 E-value=3.7e+02 Score=28.38 Aligned_cols=144 Identities=12% Similarity=0.094 Sum_probs=75.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHh--cCCHHHHHHhcCCCCHH-HHHHHHHHHHHHhccChHH
Q 017926 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQLNHPDTD-IRKISAWILGKASQNNPLV 208 (363)
Q Consensus 132 lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~--lGgl~~Li~lL~s~~~~-Ir~~Aa~~Lgt~aqNNp~~ 208 (363)
++--.+++|.+. .+.-.|..||..|..++.+-- ..|.. .=.+..+++.-++++++ ++..+=-|+.++++-.|.
T Consensus 330 iL~~l~EvL~d~-~~~~~k~laLrvL~~ml~~Q~--~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~- 405 (516)
T KOG2956|consen 330 ILLLLLEVLSDS-EDEIIKKLALRVLREMLTNQP--ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL- 405 (516)
T ss_pred HHHHHHHHHccc-hhhHHHHHHHHHHHHHHHhch--HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch-
Confidence 333445555542 244567778888887776531 11211 11344445554444444 444444455666665553
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHh--cCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 017926 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (363)
Q Consensus 209 Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~--~gG~~~L~~lL~s~~~~~klr~kA~~lL~~ 286 (363)
|. |..+..++.+.+.+..+.++-.+--++..- .++.... -.-.+.+++...+. +..+|.-|+|.|-+
T Consensus 406 ~~-------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l--~~EeL~~ll~diaP~~iqay~S~--SS~VRKtaVfCLVa 474 (516)
T KOG2956|consen 406 QC-------IVNISPLILTADEPRAVAVIKMLTKLFERL--SAEELLNLLPDIAPCVIQAYDST--SSTVRKTAVFCLVA 474 (516)
T ss_pred hH-------HHHHhhHHhcCcchHHHHHHHHHHHHHhhc--CHHHHHHhhhhhhhHHHHHhcCc--hHHhhhhHHHhHHH
Confidence 22 233334444444443344444444444431 1233332 25567788877776 45689999999999
Q ss_pred Hhhh
Q 017926 287 LAKC 290 (363)
Q Consensus 287 L~~~ 290 (363)
+...
T Consensus 475 mv~~ 478 (516)
T KOG2956|consen 475 MVNR 478 (516)
T ss_pred HHHH
Confidence 9864
No 275
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=46.70 E-value=3.4e+02 Score=30.29 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=83.7
Q ss_pred hcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHH
Q 017926 182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 261 (363)
Q Consensus 182 lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~ 261 (363)
.|.+...+||..|+..+..++.-.- +++- -.-.+|.++.+...++=-.|...+.+|..++- -.-+.|....-++
T Consensus 526 ~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~-~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~---v~g~ei~~~~Llp 599 (759)
T KOG0211|consen 526 WLPDHVYSIREAAARNLPALVETFG--SEWA-RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE---VLGQEITCEDLLP 599 (759)
T ss_pred hhhhhHHHHHHHHHHHhHHHHHHhC--cchh-HHHhhHHHHHHhcCcccchhhHHHHHHHHHHH---HhccHHHHHHHhH
Confidence 3455567899999999988886433 2221 12357888888877654567777777776553 1223444555667
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 262 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 262 ~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
.+.++..++ ...+|.+++..+..+... ......+.-+.+.+..+.+..+.+++-.|..|..
T Consensus 600 ~~~~l~~D~--vanVR~nvak~L~~i~~~--------L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~ 660 (759)
T KOG0211|consen 600 VFLDLVKDP--VANVRINVAKHLPKILKL--------LDESVRDEEVLPLLETLSSDQELDVRYRAILAFG 660 (759)
T ss_pred HHHHhccCC--chhhhhhHHHHHHHHHhh--------cchHHHHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 777777776 456899999999988752 1223334444455555555446666655544433
No 276
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=46.32 E-value=79 Score=30.78 Aligned_cols=148 Identities=14% Similarity=0.094 Sum_probs=83.8
Q ss_pred CCHHHHHHhcC--CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc---
Q 017926 174 GGLSVLVGQLN--HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL--- 248 (363)
Q Consensus 174 Ggl~~Li~lL~--s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~--- 248 (363)
..+++|+..|. +..+-||-.|+.++|.... ...++.|-++.+++..+++..+..||--+=..+.
T Consensus 67 ~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~ 135 (289)
T KOG0567|consen 67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDK 135 (289)
T ss_pred hhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccc
Confidence 35788887664 5678999999999998762 2456667777755545555544444443322110
Q ss_pred -ccHHHHH--------hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhh----h-hc-CCCC---------cchhHH
Q 017926 249 -AGQEMFY--------VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ----L-EN-MHKV---------EPPLFR 304 (363)
Q Consensus 249 -~a~~~f~--------~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~----~-~~-~~~~---------~~~~l~ 304 (363)
.....+. ..+-+.-|...|.+.+....-|.+|.|.|+++-.+. + +. ..++ ....+.
T Consensus 136 ~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~ 215 (289)
T KOG0567|consen 136 IANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQ 215 (289)
T ss_pred ccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhcc
Confidence 0011111 112244455555544444455778888888773211 0 00 0111 112234
Q ss_pred hCCcHHHHHHhccCC--ChhHHHHHHHHHH
Q 017926 305 DRFFLKSVVDLTASA--DLDLQEKVFLEHV 332 (363)
Q Consensus 305 ~~g~v~~Lv~lL~~~--d~~lqE~al~aL~ 332 (363)
+.-.++.|.+.|... ++-+|--++.||+
T Consensus 216 s~~ai~~L~k~L~d~~E~pMVRhEaAeALG 245 (289)
T KOG0567|consen 216 SPAAIPSLIKVLLDETEHPMVRHEAAEALG 245 (289)
T ss_pred chhhhHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 456688888888753 7888888888887
No 277
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=46.11 E-value=89 Score=34.49 Aligned_cols=158 Identities=12% Similarity=0.064 Sum_probs=101.3
Q ss_pred hhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHH--------------------------------------HHhccChHH
Q 017926 167 ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILG--------------------------------------KASQNNPLV 208 (363)
Q Consensus 167 An~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lg--------------------------------------t~aqNNp~~ 208 (363)
....++.||...|+.+.....++-+..+..+|. +++.-|...
T Consensus 497 ~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~ 576 (748)
T KOG4151|consen 497 RAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLASISESD 576 (748)
T ss_pred cCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhh
Confidence 335567788888887765555555555555555 233334555
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHh--cCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 017926 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILGNSSFEIRLHRKAVSLVGD 286 (363)
Q Consensus 209 Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~--~gG~~~L~~lL~s~~~~~klr~kA~~lL~~ 286 (363)
++.+++.-+++.+-.++..+++..++.++..+++|.=+ +.-...|+- ..|.+....++... +.+...-++..+..
T Consensus 577 r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~-~~~~e~si~e~~~~l~~w~~~~e~~--~E~~~lA~a~a~a~ 653 (748)
T KOG4151|consen 577 RQKILKEKALGKIEELMTEENPALQRAALESIINLLWS-PLLYERSIVEYKDRLKLWNLNLEVA--DEKFELAGAGALAA 653 (748)
T ss_pred HHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhh-HHHHHHHhhccccCchHHHHHHHhh--hhHHhhhccccccc
Confidence 66677777777766677777777888899999998865 445555553 35777777766653 56666666666554
Q ss_pred HhhhhhhcCCCCcch-hHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 287 LAKCQLENMHKVEPP-LFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 287 L~~~~~~~~~~~~~~-~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
++. ..+..+. ...-..+...++.++.+.+..+|-..+....
T Consensus 654 I~s-----v~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~l 695 (748)
T KOG4151|consen 654 ITS-----VVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIIL 695 (748)
T ss_pred hhh-----cchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhh
Confidence 543 2233333 3334456677788888888888877766655
No 278
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=45.66 E-value=1.7e+02 Score=29.23 Aligned_cols=83 Identities=13% Similarity=0.176 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHH
Q 017926 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 263 (363)
Q Consensus 185 s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~-~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L 263 (363)
+....+|..++--|++-+. +|..+..|..+|....+++.+.... +..-.-+..++--++.........+.+.+-..++
T Consensus 33 ~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll 111 (361)
T PF07814_consen 33 SSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDRDSLRLL 111 (361)
T ss_pred CCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhchhHHHHH
Confidence 4567889888888888887 6889999999999999999995533 3232222223333333333344444455556666
Q ss_pred HHhhc
Q 017926 264 QDILG 268 (363)
Q Consensus 264 ~~lL~ 268 (363)
..++.
T Consensus 112 ~~Ll~ 116 (361)
T PF07814_consen 112 LKLLK 116 (361)
T ss_pred HHHhc
Confidence 66666
No 279
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=44.64 E-value=52 Score=29.97 Aligned_cols=69 Identities=16% Similarity=0.125 Sum_probs=52.0
Q ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHH----hhcCCCHHHHHHHHHHHHHHhcCCc
Q 017926 177 SVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK----MVKSSFVEEAVKALYTVSSLIRNNL 248 (363)
Q Consensus 177 ~~Li~lL~s-~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~----LL~s~~~~v~~kAL~ALSsLiR~~~ 248 (363)
..|+..|.+ .+..+..+...|++.++||.|..+- +.|.++.++. ++.+.+.++++.++.++++++.-.+
T Consensus 104 ~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 104 RGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 345555554 4788889999999999999997765 3577776664 5556677899999999999876544
No 280
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=43.90 E-value=3.6e+02 Score=31.27 Aligned_cols=144 Identities=13% Similarity=0.073 Sum_probs=87.6
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCcccHH
Q 017926 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQE 252 (363)
Q Consensus 174 Ggl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~-~~v~~kAL~ALSsLiR~~~~a~~ 252 (363)
+.+..|+.-|++.+..||+.||.-+|.+++--|. .+...++...++++..-+ +..=..++.||+-+.+-.----.
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~----~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP----ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH----HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 4566777888899999999999999999998883 233346667777666533 34445788888877654221112
Q ss_pred HHHhcCcHHHHHHhhcCC------CccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhc-----cCCCh
Q 017926 253 MFYVEAGDLMLQDILGNS------SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT-----ASADL 321 (363)
Q Consensus 253 ~f~~~gG~~~L~~lL~s~------~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL-----~~~d~ 321 (363)
.+. ..+++|...|.-+ ....-+|-.|++++-+++.. ..+...+ +++..|...| =..+.
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra----ys~~~l~-----p~l~~L~s~LL~~AlFDrev 485 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA----YSPSDLK-----PVLQSLASALLIVALFDREV 485 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc----CChhhhh-----HHHHHHHHHHHHHHhcCchh
Confidence 222 3445555554211 11234888999999999863 1222111 2333333332 23467
Q ss_pred hHHHHHHHHHH
Q 017926 322 DLQEKVFLEHV 332 (363)
Q Consensus 322 ~lqE~al~aL~ 332 (363)
++|-.|..|+.
T Consensus 486 ncRRAAsAAlq 496 (1133)
T KOG1943|consen 486 NCRRAASAALQ 496 (1133)
T ss_pred hHhHHHHHHHH
Confidence 88887777765
No 281
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=43.69 E-value=5.3e+02 Score=29.19 Aligned_cols=142 Identities=16% Similarity=0.142 Sum_probs=85.1
Q ss_pred CCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcc-----ChH-HHHHHHHcCcHHHHHHhhcCCCH--HHHHHHHHHHHHHh
Q 017926 174 GGLSVLVGQLN-HPDTDIRKISAWILGKASQN-----NPL-VQKQVLELGALSKLMKMVKSSFV--EEAVKALYTVSSLI 244 (363)
Q Consensus 174 Ggl~~Li~lL~-s~~~~Ir~~Aa~~Lgt~aqN-----Np~-~Q~~~le~G~lp~Ll~LL~s~~~--~v~~kAL~ALSsLi 244 (363)
..++.++.++. +.+++++..|...|+.+++. -|. .+.++.....+..|+...-.+.. .+-+..+..+-.++
T Consensus 190 ~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~vlI~ll 269 (838)
T KOG2073|consen 190 ELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGIIVLISLL 269 (838)
T ss_pred HHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHHHHHHhc
Confidence 46888888885 45799999999999999988 332 66677777888888865554332 33444444433332
Q ss_pred c---CCccc------------H-HHHH---hcCcH----HHHHHhhcCCCc--------------cHHHHHHHHHHHHHH
Q 017926 245 R---NNLAG------------Q-EMFY---VEAGD----LMLQDILGNSSF--------------EIRLHRKAVSLVGDL 287 (363)
Q Consensus 245 R---~~~~a------------~-~~f~---~~gG~----~~L~~lL~s~~~--------------~~klr~kA~~lL~~L 287 (363)
- ..... . ...+ -.+|+ .-++.+|..+.. =-+-|.|.+-+++.|
T Consensus 270 ~~~r~~~~~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rlki~eliael 349 (838)
T KOG2073|consen 270 NPRRDTVETNSTTTILSQPPSERDPIVLNELLGAMEPRLGDFVQLLLEPEKLDLLETTYGELEPPLGFERLKIVELIAEL 349 (838)
T ss_pred CcccccccccceeeeecCCccccCccchHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhccCCCcchHHHHHHHHHHHH
Confidence 1 10000 0 0000 01222 223333333211 124677889999988
Q ss_pred hhhhhhcCCCCcchhHHhCCcHHHHHHhccCC
Q 017926 288 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 319 (363)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~ 319 (363)
..+ .+......+...+++..++++...-
T Consensus 350 L~~----~~~~l~~el~~~~~~~r~lD~f~~y 377 (838)
T KOG2073|consen 350 LHC----SNMTLLNELRAEGIAERLLDLFFEY 377 (838)
T ss_pred hcc----CcHHHHhHHhhhhhHHHHHHHHHhc
Confidence 874 4556666777788888888887753
No 282
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=43.33 E-value=3.3e+02 Score=26.64 Aligned_cols=92 Identities=15% Similarity=0.080 Sum_probs=51.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHH
Q 017926 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211 (363)
Q Consensus 132 lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~ 211 (363)
.+...+..+. .+..+......+..|...+...+ .=..-..+..+..-+++..+.+|..-..++|.+...++.....
T Consensus 23 i~~~l~~~~~-KE~nE~aL~~~l~al~~~~~~~~---~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 23 IVQGLSPLLS-KESNEAALSALLSALFKHLFFLS---SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred HHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHhC---cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 3334444444 35566667666776665443330 0001123445556677777779999999999998711111111
Q ss_pred HHHcCcHHHHHHhhcC
Q 017926 212 VLELGALSKLMKMVKS 227 (363)
Q Consensus 212 ~le~G~lp~Ll~LL~s 227 (363)
-.-...+|.|++.++.
T Consensus 99 ~~~~~~~~~L~~~~~~ 114 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKE 114 (339)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 1123578999998854
No 283
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=43.00 E-value=94 Score=28.24 Aligned_cols=104 Identities=14% Similarity=0.168 Sum_probs=49.4
Q ss_pred ChHHHHHHHHcCcHHHHHHhhcCC---C---------------HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHh
Q 017926 205 NPLVQKQVLELGALSKLMKMVKSS---F---------------VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 266 (363)
Q Consensus 205 Np~~Q~~~le~G~lp~Ll~LL~s~---~---------------~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~l 266 (363)
+..-|+.+.+.|++..++.+|+.+ . ..+-..+..-|...+++|+.++..+.++=.+- +..+
T Consensus 32 ~~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~~~~l-~~~~ 110 (207)
T PF01365_consen 32 NRERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKHLDFL-ISIF 110 (207)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH------H
T ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHH-HHHH
Confidence 345788888889999999998742 1 13345777788899999999999888763321 2222
Q ss_pred hcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccC
Q 017926 267 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 318 (363)
Q Consensus 267 L~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~ 318 (363)
+... ...-.-+.-++..+.. .+++....+.+.. +..++++|..
T Consensus 111 ~~~~---~~~~~~~~d~l~~i~~-----dN~~L~~~i~e~~-I~~~i~ll~~ 153 (207)
T PF01365_consen 111 MQLQ---IGYGLGALDVLTEIFR-----DNPELCESISEEH-IEKFIELLRK 153 (207)
T ss_dssp HCCC---H-TTHHHHHHHHHHHT-----T-----------------------
T ss_pred HHhh---ccCCchHHHHHHHHHH-----CcHHHHHHhhHHH-HHHHHHHHHH
Confidence 2221 1111235666677764 4566666665544 7888888876
No 284
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=42.93 E-value=2.8e+02 Score=25.82 Aligned_cols=136 Identities=13% Similarity=-0.017 Sum_probs=81.2
Q ss_pred HHHHHH-hcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHH
Q 017926 176 LSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254 (363)
Q Consensus 176 l~~Li~-lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f 254 (363)
++.++. +-+..++.++......|..++..+..+.. -++..|..|.+.+....+.-++.-+..+...++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 345554 44678999999999999999976511211 134556666666665555556666666665544322
Q ss_pred HhcCcHHHHHHh--------hcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhc-cCCChhHHH
Q 017926 255 YVEAGDLMLQDI--------LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT-ASADLDLQE 325 (363)
Q Consensus 255 ~~~gG~~~L~~l--------L~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL-~~~d~~lqE 325 (363)
+.++.++.. ..++..........+..+..+|.. .|+ .-..+++.+..+| +..+...+.
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~-----~p~-----~g~~ll~~ls~~L~~~~~~~~~a 140 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCS-----RPD-----HGVDLLPLLSGCLNQSCDEVAQA 140 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHh-----Chh-----hHHHHHHHHHHHHhccccHHHHH
Confidence 222222222 111222333444556788888863 333 3345788889999 676777887
Q ss_pred HHHHHHH
Q 017926 326 KVFLEHV 332 (363)
Q Consensus 326 ~al~aL~ 332 (363)
-++.+|.
T Consensus 141 lale~l~ 147 (234)
T PF12530_consen 141 LALEALA 147 (234)
T ss_pred HHHHHHH
Confidence 7777776
No 285
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=42.39 E-value=1.6e+02 Score=30.92 Aligned_cols=161 Identities=16% Similarity=0.111 Sum_probs=92.9
Q ss_pred HHHHcCC-CCHHHHHHHHHHHhh--c--CC-----CCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCC--C
Q 017926 120 LMEKLKT-PSDAQLIQIAIDDLN--N--ST-----LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP--D 187 (363)
Q Consensus 120 al~~l~~-~~d~~lmk~al~~L~--~--~~-----~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~--~ 187 (363)
.++.+.. -+|.+++.+.+..+. . ++ .+..-|...|.-|. ...--++.+- ..+..+...|.++ +
T Consensus 260 ~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~---kS~~Aa~~~~--~~~~i~~~~l~~~~~~ 334 (501)
T PF13001_consen 260 LLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLS---KSVIAATSFP--NILQIVFDGLYSDNTN 334 (501)
T ss_pred HHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHH---HhHHHHhCCc--cHHHHHhccccCCccc
Confidence 4444432 357788888888877 2 11 23444545544443 3333233222 2344455566666 7
Q ss_pred HHHHHHHHHHH---HHHhccChHHHHHHHHcCcHHHHHHhhc--------CCCHHHHHHHHHHHHHHhcCCcccHHHH-H
Q 017926 188 TDIRKISAWIL---GKASQNNPLVQKQVLELGALSKLMKMVK--------SSFVEEAVKALYTVSSLIRNNLAGQEMF-Y 255 (363)
Q Consensus 188 ~~Ir~~Aa~~L---gt~aqNNp~~Q~~~le~G~lp~Ll~LL~--------s~~~~v~~kAL~ALSsLiR~~~~a~~~f-~ 255 (363)
..+|..+..-+ .....+-+..+-..+....+..++.++. +++...|..+--+|+.|.+..|.. | -
T Consensus 335 ~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l---~~~ 411 (501)
T PF13001_consen 335 SKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSL---FSK 411 (501)
T ss_pred cccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccc---ccc
Confidence 78888887777 6665554433333333333333333442 223467899999999999988753 3 2
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhh
Q 017926 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 290 (363)
Q Consensus 256 ~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~ 290 (363)
+.+-+..|..-|..+ +..++..+--+|+.|+..
T Consensus 412 d~~li~~LF~sL~~~--~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 412 DLSLIEFLFDSLEDE--SPEVRVSIQEALSSLAPA 444 (501)
T ss_pred cHHHHHHHHHHhhCc--chHHHHHHHHHHHHHHHH
Confidence 344556666667554 455788888888888754
No 286
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=41.67 E-value=3.8e+02 Score=28.78 Aligned_cols=140 Identities=21% Similarity=0.197 Sum_probs=77.5
Q ss_pred ccCCCHHHHH-HhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCC----------------CH---HHHHHHHHHHHHcc
Q 017926 102 VQRLSPSELK-KRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTL----------------SL---EDSQRALQELLILV 161 (363)
Q Consensus 102 ~~~~~~e~l~-~r~~~Lkeal~~l~~~~d~~lmk~al~~L~~~~~----------------s~---e~k~~AL~~L~~Lv 161 (363)
.+|++.+.|- +-+.+.+++.+.+.+ ++..++++|+..|++..- +. -.-+.-|-.|..++
T Consensus 193 ~Kp~~~h~LS~ElQlYy~~It~a~~g-~~~~~r~eAL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~ 271 (576)
T KOG2549|consen 193 LKPSSKHVLSVELQLYYKEITEACTG-SDEPLRQEALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMV 271 (576)
T ss_pred ccccchhhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHH
Confidence 4555554432 233444666666555 678889999999976431 00 01122233333333
Q ss_pred cC-CCchhhHHh---cCCHHHHHHhcCC----------CCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcC
Q 017926 162 EP-IDNANDLSK---LGGLSVLVGQLNH----------PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 227 (363)
Q Consensus 162 e~-iDnAn~l~~---lGgl~~Li~lL~s----------~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s 227 (363)
.. .||-+-|.. .-.+|.++.|+=+ .+-.+|-.||..++.++.+-...-+. ++--.+..|.+.+.+
T Consensus 272 rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D 350 (576)
T KOG2549|consen 272 RSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLD 350 (576)
T ss_pred HHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcC
Confidence 32 244443332 3457777776632 23459999999999999875543333 444566677777766
Q ss_pred CCH--HHHHHHHHHHHHH
Q 017926 228 SFV--EEAVKALYTVSSL 243 (363)
Q Consensus 228 ~~~--~v~~kAL~ALSsL 243 (363)
... ....-++..|+.+
T Consensus 351 ~~~~~st~YGai~gL~~l 368 (576)
T KOG2549|consen 351 NKKPLSTHYGAIAGLSEL 368 (576)
T ss_pred CCCCchhhhhHHHHHHHh
Confidence 532 3344555555554
No 287
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=41.33 E-value=2.7e+02 Score=30.71 Aligned_cols=162 Identities=13% Similarity=0.093 Sum_probs=93.6
Q ss_pred cCCCchhhHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcc--ChHHHHHHHHcCcHHHHHHhhcCCCH-HHHHHHH
Q 017926 162 EPIDNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQN--NPLVQKQVLELGALSKLMKMVKSSFV-EEAVKAL 237 (363)
Q Consensus 162 e~iDnAn~l~~lGgl~~Li~lL~s-~~~~Ir~~Aa~~Lgt~aqN--Np~~Q~~~le~G~lp~Ll~LL~s~~~-~v~~kAL 237 (363)
+..++...|.+.||...+..+++. ++.+++..+..++++++-- +...+..+..... ..+-.++...+. +....|.
T Consensus 501 ~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~ersY~~~ 579 (699)
T KOG3665|consen 501 ENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKWDSIERSYNAA 579 (699)
T ss_pred CCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhcchhhHHHHHH
Confidence 346889999999999999999974 7889999999999998852 2222222221111 111123333222 3344555
Q ss_pred HHHHHHhcCCc-----------------------ccHHHHHhcCcHHH-HHHhhcCCCccHHHHHHHHHHHHHHhhhhhh
Q 017926 238 YTVSSLIRNNL-----------------------AGQEMFYVEAGDLM-LQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293 (363)
Q Consensus 238 ~ALSsLiR~~~-----------------------~a~~~f~~~gG~~~-L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~ 293 (363)
.-|+.++-+.+ .....++-..-+.. +..++..... ...+.=|+|.+.+++.
T Consensus 580 siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~-~g~~lWal~ti~~~~~---- 654 (699)
T KOG3665|consen 580 SILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKS-DGSQLWALWTIKNVLE---- 654 (699)
T ss_pred HHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCC-CchHHHHHHHHHHHHH----
Confidence 55555554322 11222222222223 5455554432 3467789999999986
Q ss_pred cCCCCcchhHHhCCcHHHHHHhccCC-ChhHHHHHHHH
Q 017926 294 NMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKVFLE 330 (363)
Q Consensus 294 ~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~a 330 (363)
.+++....+.+.|++..+.+.-... ..++++.+...
T Consensus 655 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (699)
T KOG3665|consen 655 -QNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLV 691 (699)
T ss_pred -cChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHH
Confidence 3566777777888888777664432 34444444433
No 288
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=41.10 E-value=1.2e+02 Score=28.54 Aligned_cols=127 Identities=18% Similarity=0.107 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHHcccCCCchhhHHhcCC--HHHHHHhcCCC----CHHHHHHHHHHHHHHhc----cC--hHHHHHH
Q 017926 145 LSLEDSQRALQELLILVEPIDNANDLSKLGG--LSVLVGQLNHP----DTDIRKISAWILGKASQ----NN--PLVQKQV 212 (363)
Q Consensus 145 ~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGg--l~~Li~lL~s~----~~~Ir~~Aa~~Lgt~aq----NN--p~~Q~~~ 212 (363)
...-.+.-++.-+..+.........+..... +...+..+.+. +..+|..++.++-+++- ++ .+.|.
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~-- 199 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQS-- 199 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHH--
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHH--
Confidence 4667888899999999888777776665433 33444433333 78999999999887752 11 11222
Q ss_pred HHcCcHHHHHH-hhcC-CCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHH
Q 017926 213 LELGALSKLMK-MVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLH 277 (363)
Q Consensus 213 le~G~lp~Ll~-LL~s-~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr 277 (363)
..+..+++ +... .+++...+++-||++++...+.........|.-..+...-... .+.+++
T Consensus 200 ---~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~-~e~ri~ 262 (268)
T PF08324_consen 200 ---ELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKS-KEPRIK 262 (268)
T ss_dssp ---HHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHT-TSHHHH
T ss_pred ---HHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcc-cchHHH
Confidence 23556666 3333 4678889999999999955433333322244444444433222 245554
No 289
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=41.03 E-value=5.3e+02 Score=28.46 Aligned_cols=117 Identities=18% Similarity=0.064 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHh-cCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhh
Q 017926 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~l-L~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL 225 (363)
.--+..++..+--..+.+| -.+++--.+|.|-.+ +++++..++..++-|++.++|. ++...=..-++++.+-.
T Consensus 403 ~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD~~~v~d~~lpi~~~~ 476 (700)
T KOG2137|consen 403 VQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LDKAAVLDELLPILKCI 476 (700)
T ss_pred hhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHh
Confidence 3445667777777777888 566766667777654 5778999999999999999954 33222223345555555
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCC
Q 017926 226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 270 (363)
Q Consensus 226 ~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~ 270 (363)
+..++.+....+...-+++-..+.+ ..|...+-++.++.+...+
T Consensus 477 ~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 477 KTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred cCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcc
Confidence 5666666555555555444443443 4566667777777776554
No 290
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=40.81 E-value=96 Score=25.82 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=30.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHh
Q 017926 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (363)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~ 256 (363)
+|+.|++-|.+++.+|...|+..|-..+... ...+.++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 5889999999989999999999998877665 44555554
No 291
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=40.13 E-value=1.7e+02 Score=31.73 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhc----CC-----------HHHHHHhcCCCCHHHHHHHHHHHHHHhcc--ChHH
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKL----GG-----------LSVLVGQLNHPDTDIRKISAWILGKASQN--NPLV 208 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~l----Gg-----------l~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN--Np~~ 208 (363)
.++.|+.||++|.+++|+-.+-.-...+ |- +..+..-+--++.-||..|..+|...+=| .+.+
T Consensus 444 ~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~ 523 (898)
T COG5240 444 DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS 523 (898)
T ss_pred CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc
Confidence 5688999999999999987654332221 10 11111111114567999999999887754 4555
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 017926 209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 243 (363)
Q Consensus 209 Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsL 243 (363)
++.+ ...|-+.+.+.++++|-.|.+++-++
T Consensus 524 ~~sv-----~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 524 PQSV-----ENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHHH-----HHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 5543 45566788888899999999999887
No 292
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=40.09 E-value=1.3e+02 Score=34.53 Aligned_cols=119 Identities=13% Similarity=0.187 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHh
Q 017926 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 266 (363)
Q Consensus 188 ~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~-~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~l 266 (363)
+.||..+.-.+|.+|=.+.+..+ ..+|.|++=|.-.+ ..+|...+-|++-+|-++-...+ --++.|..+
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d-----~YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTD-----RYIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHH-----HhhHHHHHH
Confidence 45889999999999855544333 46899998887544 56788888888888766532222 246888899
Q ss_pred hcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHH
Q 017926 267 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKV 327 (363)
Q Consensus 267 L~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~a 327 (363)
|.++ ++-+|+.+.-+|++|.... .-.+.-.-+++.+..++.. +++++--+
T Consensus 1015 L~Dp--~~iVRrqt~ilL~rLLq~~--------~vKw~G~Lf~Rf~l~l~D~-~edIr~~a 1064 (1529)
T KOG0413|consen 1015 LCDP--SVIVRRQTIILLARLLQFG--------IVKWNGELFIRFMLALLDA-NEDIRNDA 1064 (1529)
T ss_pred hcCc--hHHHHHHHHHHHHHHHhhh--------hhhcchhhHHHHHHHHccc-CHHHHHHH
Confidence 9987 6779999999999998521 1111222345555555554 45555433
No 293
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=39.57 E-value=1.9e+02 Score=25.57 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=82.1
Q ss_pred ccChHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcC--CcccHHHHHhcCcHHHHHHhhcCCCccHHHHHH
Q 017926 203 QNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRN--NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 279 (363)
Q Consensus 203 qNNp~~Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~--~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~k 279 (363)
||+|..=+.+.|.+.+..++++++. .+..++...+..+|-++.| ++.+.--....+-+.-++..--+-+ +..+..-
T Consensus 13 q~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~-~ee~l~y 91 (149)
T PF09758_consen 13 QNDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFS-DEEVLSY 91 (149)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCC-cchhHHH
Confidence 7889999999999999999999998 4467899999999999987 3444444556676776666543332 3446677
Q ss_pred HHHHHHHHhhhhhhcCCCCcchhHHh--CCcHHHHH---HhccCCChhHHHHHHHHH
Q 017926 280 AVSLVGDLAKCQLENMHKVEPPLFRD--RFFLKSVV---DLTASADLDLQEKVFLEH 331 (363)
Q Consensus 280 A~~lL~~L~~~~~~~~~~~~~~~l~~--~g~v~~Lv---~lL~~~d~~lqE~al~aL 331 (363)
-..+|..|+. .-+++....+.. .+-.|.+. .+..++|.=+|- |.+.+
T Consensus 92 YIsfLK~lSl----kln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~-avR~i 143 (149)
T PF09758_consen 92 YISFLKTLSL----KLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRT-AVRTI 143 (149)
T ss_pred HHHHHHHHHh----hcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHH-HHHHH
Confidence 7788888875 245555555543 23445444 444555555554 33443
No 294
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=39.10 E-value=4.1e+02 Score=32.69 Aligned_cols=130 Identities=12% Similarity=0.095 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHccc-CCCchhhHHhcCCHHHHHHhc----CCCCHHHHHHHHHHHHHHhcc--------ChHHHHHHHHc
Q 017926 149 DSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQL----NHPDTDIRKISAWILGKASQN--------NPLVQKQVLEL 215 (363)
Q Consensus 149 ~k~~AL~~L~~Lve-~iDnAn~l~~lGgl~~Li~lL----~s~~~~Ir~~Aa~~Lgt~aqN--------Np~~Q~~~le~ 215 (363)
.|.-.|+.|-+... |++-.+ ++=-..|..+-..+ .+.+..++..|.-.|..++.. |-..|+.|
T Consensus 1108 pr~FsLqKLveIa~~Nm~Rir-l~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkef--- 1183 (1780)
T PLN03076 1108 PRVFSLTKIVEIAHYNMNRIR-LVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEF--- 1183 (1780)
T ss_pred CchhHHHHHHHHHHhcccchh-eehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHH---
Confidence 46666777766554 233222 22124454454432 345788999999988887762 33455555
Q ss_pred CcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCC--CccHHHHHHHHHHHHHHhh
Q 017926 216 GALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS--SFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 216 G~lp~Ll~LL~-s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~--~~~~klr~kA~~lL~~L~~ 289 (363)
+.++..++. +.+.+++...+.++..|+....... + .||..+..++... ..+..+-..|--.+..++.
T Consensus 1184 --LkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nI----k-SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~ 1253 (1780)
T PLN03076 1184 --MKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNV----K-SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR 1253 (1780)
T ss_pred --HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhh----h-cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 455555554 4456899999999999987543222 2 3999999988732 2234555556666665554
No 295
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.09 E-value=1e+02 Score=33.37 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=61.0
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc
Q 017926 181 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 259 (363)
Q Consensus 181 ~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~L-L~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG 259 (363)
++|.+.++-+|...+..++.+--.. -..|++..|+.. +++.++.||+.|+.||+-+|-..+. .
T Consensus 523 ell~d~ds~lRy~G~fs~alAy~GT-------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~ 586 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLALAYVGT-------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------L 586 (926)
T ss_pred HHhcCchHHhhhccHHHHHHHHhcC-------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------h
Confidence 5667788888888777776553211 124778888888 5566789999999999987655443 2
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 260 DLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 260 ~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
+.-.+++|... .+.-+|--++++|.--|.
T Consensus 587 lv~tvelLs~s-hN~hVR~g~AvaLGiaca 615 (926)
T COG5116 587 LVGTVELLSES-HNFHVRAGVAVALGIACA 615 (926)
T ss_pred hhHHHHHhhhc-cchhhhhhhHHHhhhhhc
Confidence 33344444433 345577777777776664
No 296
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=38.97 E-value=15 Score=22.56 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhc
Q 017926 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226 (363)
Q Consensus 190 Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~ 226 (363)
||..|+++||.+-. .-++|.|++.|+
T Consensus 1 VR~~Aa~aLg~igd-----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD-----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S-----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-----------HHHHHHHHHHhc
Confidence 68899999998753 235677776654
No 297
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=38.78 E-value=3.8e+02 Score=30.54 Aligned_cols=138 Identities=11% Similarity=0.058 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHcccCCCchhhHHhcC-CHHHHHHhc--CCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHh
Q 017926 148 EDSQRALQELLILVEPIDNANDLSKLG-GLSVLVGQL--NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224 (363)
Q Consensus 148 e~k~~AL~~L~~Lve~iDnAn~l~~lG-gl~~Li~lL--~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~L 224 (363)
|.....++.|...| ..|.......-. -.|.++.+. .+++|-+-..+--++-.+.| +..++.-. .+-.||.|+..
T Consensus 545 evl~llmE~Ls~vv-~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~~~~g~m-~e~~iPslisi 621 (1005)
T KOG2274|consen 545 EVLVLLMEALSSVV-KLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IAANYGPM-QERLIPSLISV 621 (1005)
T ss_pred HHHHHHHHHHHHHh-ccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHHhhcch-HHHHHHHHHHH
Confidence 43434445554433 344444333323 344444433 45788888888888877777 33344332 23479999999
Q ss_pred hcCCC----HHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 225 VKSSF----VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 225 L~s~~----~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
+..+. .....-++--|.+++|+.|+-...-.-.-.++.+.++.-+.. |...-..+.-.++++..
T Consensus 622 l~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsd-D~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 622 LQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSD-DHETLQNATECLRALIS 689 (1005)
T ss_pred HcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecC-ChHHHHhHHHHHHHHHh
Confidence 99765 456778999999999997665443333445677777754332 33455567777777764
No 298
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=38.42 E-value=4.2e+02 Score=26.52 Aligned_cols=140 Identities=16% Similarity=0.181 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc----HHH
Q 017926 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG----DLM 262 (363)
Q Consensus 187 ~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG----~~~ 262 (363)
.+++--.+-..+..|.. .+...+.+++..-+......+..+.-.+...|......+++.|......|...+- .+.
T Consensus 138 ~~~iaL~cg~mlrEcir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~ 216 (342)
T KOG1566|consen 138 TPEIALTCGNMLRECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEV 216 (342)
T ss_pred chHHHHHHHHHHHHHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHH
Confidence 36777666666776664 6778888888888888888888877788889999999999888888888887665 345
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcc-hhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP-PLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 263 L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~-~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
--.++.+.+ --.|+.+..++.++... +++...- ..+.+..-++.++.+|+....+.|-.|-+.-+
T Consensus 217 ~~~Ll~s~N--yvtkrqs~kllg~llld---r~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFK 282 (342)
T KOG1566|consen 217 YEKLLRSEN--YVTKRQSLKLLGELLLD---RSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFK 282 (342)
T ss_pred HHHHhcccc--eehHHHHHHhHHHHHhC---CCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHH
Confidence 666788874 44788999999998853 2333322 33344567789999999888888877777665
No 299
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=38.06 E-value=4.4e+02 Score=26.83 Aligned_cols=97 Identities=15% Similarity=0.125 Sum_probs=64.6
Q ss_pred HHHHHHHHHcccCCCc--hhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCC
Q 017926 151 QRALQELLILVEPIDN--ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS 228 (363)
Q Consensus 151 ~~AL~~L~~Lve~iDn--An~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~ 228 (363)
....+-|..+++..+. +..+....-+.-|+.+++++|+.=|.....++-.+-...+..+..+.+ ..-..+.+.+.+.
T Consensus 108 ~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~ 186 (409)
T PF01603_consen 108 QLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYET 186 (409)
T ss_dssp HHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCc
Confidence 4566777777776543 667777778889999999999999999999999888777766555433 3444555555544
Q ss_pred CH-HHHHHHHHHHHHHhcCCc
Q 017926 229 FV-EEAVKALYTVSSLIRNNL 248 (363)
Q Consensus 229 ~~-~v~~kAL~ALSsLiR~~~ 248 (363)
.. ......|.-++++++|+.
T Consensus 187 ~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 187 ERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp S--STHHHHHHHHHHHHTT--
T ss_pred ccccCHHHHHHHHHHHHhccC
Confidence 32 235566667777777654
No 300
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=37.62 E-value=3.4e+02 Score=25.25 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhccChHHHHHHHHc-CcHHHHHHh
Q 017926 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKM 224 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL-~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~-G~lp~Ll~L 224 (363)
-+........+.++|...-+ +....++.+..+| ++.++.++..|...|..+++ ..+++. .....+.+-
T Consensus 98 ~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~------~~vvd~~s~w~vl~~~ 167 (234)
T PF12530_consen 98 WECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE------AEVVDFYSAWKVLQKK 167 (234)
T ss_pred HHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH------HhhccHHHHHHHHHHh
Confidence 34444444556666555433 3334566777888 78899999999999999983 334443 445555555
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCcccHHHH--HhcCcHHHHHHhhcCC
Q 017926 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMF--YVEAGDLMLQDILGNS 270 (363)
Q Consensus 225 L~s~~~~v~~kAL~ALSsLiR~~~~a~~~f--~~~gG~~~L~~lL~s~ 270 (363)
+..+..+...+++..+..++.+..-..++. .....+..+=+...+.
T Consensus 168 l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 168 LSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred cCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 555555556677777777777643322222 2234555555555544
No 301
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.43 E-value=5.6e+02 Score=30.99 Aligned_cols=157 Identities=14% Similarity=0.105 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHH-----------HHHHHHHHcccCCCchhhHHhcCCHHHHHH
Q 017926 113 RQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQ-----------RALQELLILVEPIDNANDLSKLGGLSVLVG 181 (363)
Q Consensus 113 r~~~Lkeal~~l~~~~d~~lmk~al~~L~~~~~s~e~k~-----------~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~ 181 (363)
-+++|-.+-+.++.|| ++-+-|...+ ..++---|. .|.+.++-+ +- ..+|-|.+
T Consensus 941 TYKELc~LASdl~qPd---LVYKFM~LAn-h~A~wnSk~GaAfGf~~i~~~a~~kl~p~---------l~--kLIPrLyR 1005 (1702)
T KOG0915|consen 941 TYKELCNLASDLGQPD---LVYKFMQLAN-HNATWNSKKGAAFGFGAIAKQAGEKLEPY---------LK--KLIPRLYR 1005 (1702)
T ss_pred HHHHHHHHHhhcCChH---HHHHHHHHhh-hhchhhcccchhhchHHHHHHHHHhhhhH---------HH--HhhHHHhh
Confidence 4677777777777664 5555544443 333322222 223333322 11 13677777
Q ss_pred hcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhc--Cc
Q 017926 182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE--AG 259 (363)
Q Consensus 182 lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~--gG 259 (363)
+=-.+++.||-.=..+=.+++++...+-+.+++ ..+.-|+.-+.+..=.+|..+..||+-|+|+.| .++|.+. .-
T Consensus 1006 Y~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~--~~~~~e~lpel 1082 (1702)
T KOG0915|consen 1006 YQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEWRVREASCLALADLLQGRP--FDQVKEKLPEL 1082 (1702)
T ss_pred hccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCC--hHHHHHHHHHH
Confidence 766899999999999999999876555555544 345555555555444678899999999999965 4556653 56
Q ss_pred HHHHHHhhcCCCccHHHHH---HHHHHHHHHhh
Q 017926 260 DLMLQDILGNSSFEIRLHR---KAVSLVGDLAK 289 (363)
Q Consensus 260 ~~~L~~lL~s~~~~~klr~---kA~~lL~~L~~ 289 (363)
|..+.+.+.+-+ ..+|. |++..++.||.
T Consensus 1083 w~~~fRvmDDIK--EsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1083 WEAAFRVMDDIK--ESVREAADKAARALSKLCV 1113 (1702)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 777777776542 23443 55666666664
No 302
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=37.11 E-value=4.9e+02 Score=28.55 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=53.2
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCC-ChhHHHHHHHHHHhhcccccC
Q 017926 262 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKVFLEHVFCGLVFCT 340 (363)
Q Consensus 262 ~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~aL~~~~~~~~~ 340 (363)
.|-.++..+ .-|..++.||++++. .++.-.-.+.+..+++.|..+|..+ +..+...|+.+|. .+-+.
T Consensus 74 ~l~~~~~~~----~~Rl~~L~Ll~~~v~-----~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Li---mlLP~ 141 (668)
T PF04388_consen 74 KLNDYFVKP----SYRLQALTLLGHFVR-----SQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLI---MLLPH 141 (668)
T ss_pred HHHHHHcCc----hhHHHHHHHHHHHHh-----cCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHH---HHhcc
Confidence 444445543 357799999999996 4677778888999999999999987 7777788888876 44555
Q ss_pred chhhh
Q 017926 341 CPCIV 345 (363)
Q Consensus 341 ~~~~~ 345 (363)
.+...
T Consensus 142 ip~~l 146 (668)
T PF04388_consen 142 IPSSL 146 (668)
T ss_pred ccchh
Confidence 55433
No 303
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=36.32 E-value=2.9e+02 Score=24.02 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=50.3
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCc-HHHHH-HhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG-DLMLQ-DILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 212 ~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG-~~~L~-~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
+++....+.|++.+.+++..+-..++.-+..+++++....+. +.+- +..+. .++.+++++...|.-++-.+..++.
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~--ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKL--ELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 456788999999998877777778888888888764332211 1221 23333 3667665444566778888888885
No 304
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=35.07 E-value=2.4e+02 Score=23.30 Aligned_cols=71 Identities=13% Similarity=0.230 Sum_probs=48.4
Q ss_pred HHHHHHHHhhcCC--CCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhccCh
Q 017926 132 LIQIAIDDLNNST--LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQNNP 206 (363)
Q Consensus 132 lmk~al~~L~~~~--~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s--~~~~Ir~~Aa~~Lgt~aqNNp 206 (363)
+|..--.++++.. .+..+|..++..++++++-.. ..+ ....|-+..+|++ ..+++|..|..|-....+.=+
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g--~~i--~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~ 86 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMG--KHI--SSALPQIMACLQSALEIPELRSLALRCWHVLIKTLK 86 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCC
Confidence 3444445566655 577899999999999988322 111 2346667777765 577899888888888777533
No 305
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=33.85 E-value=54 Score=20.05 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcC
Q 017926 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 227 (363)
Q Consensus 189 ~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s 227 (363)
.+|..|+++||.+. +| .+++.|++.|++
T Consensus 2 ~vR~~aa~aLg~~~--~~---------~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLG--DE---------EAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcC--CH---------hHHHHHHHHhcC
Confidence 58999999999873 23 345667666654
No 306
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=33.42 E-value=78 Score=30.72 Aligned_cols=56 Identities=20% Similarity=0.144 Sum_probs=38.8
Q ss_pred HhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccCh--------------HHHHHHHHcCcHHHHHHhhc
Q 017926 171 SKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP--------------LVQKQVLELGALSKLMKMVK 226 (363)
Q Consensus 171 ~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp--------------~~Q~~~le~G~lp~Ll~LL~ 226 (363)
.+..-+..++.-|.+++...|..|+.+|..++|..- .+-..+.+.|+++.|+.+|+
T Consensus 57 ~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred hHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 333445566666777788888888888888887631 12233456799999999985
No 307
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.74 E-value=4e+02 Score=29.89 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHHcccCCCc---hhhHHhcCCHH------------HHHHhcCCCCHHHHHHHHHHHHHHhccChHHHH
Q 017926 146 SLEDSQRALQELLILVEPIDN---ANDLSKLGGLS------------VLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 210 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDn---An~l~~lGgl~------------~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~ 210 (363)
.++.|+.+|.+|.+.+|+-.. +-.+.++=|.+ .+...+--.+.-+|..|..+++....+++..+.
T Consensus 423 ~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~ 502 (865)
T KOG1078|consen 423 NPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLP 502 (865)
T ss_pred CcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc
Confidence 457899999999999987543 22222221111 111111124677999999999999876665444
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 017926 211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLi 244 (363)
. ....|-+.+.+.++++|-.|-+++.++-
T Consensus 503 s-----I~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 503 S-----ILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred c-----HHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 3 3456667888888899999999999985
No 308
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=31.87 E-value=2.1e+02 Score=26.92 Aligned_cols=53 Identities=21% Similarity=0.321 Sum_probs=35.7
Q ss_pred ccChHHHHHHHHc---CcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCcccHHHHH
Q 017926 203 QNNPLVQKQVLEL---GALSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMFY 255 (363)
Q Consensus 203 qNNp~~Q~~~le~---G~lp~Ll~LL~s~~--~~v~~kAL~ALSsLiR~~~~a~~~f~ 255 (363)
.|+|.....-++. +.+..|+..+.++. ..+-...+.+|+.|+|.-|.....++
T Consensus 98 ~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il 155 (239)
T PF11935_consen 98 PNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRIL 155 (239)
T ss_dssp TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4555555544433 67889999999876 45677899999999998776554444
No 309
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=31.58 E-value=7.4e+02 Score=27.34 Aligned_cols=75 Identities=15% Similarity=0.106 Sum_probs=51.8
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhccChHHHHHHH---HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhc
Q 017926 181 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVL---ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE 257 (363)
Q Consensus 181 ~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~l---e~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~ 257 (363)
..+..-+.+++..|.-+|.-++.+.+..-..+. ....+..++..+. .++..+.-++..|+|+..| +.+++.|...
T Consensus 551 ~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~ 628 (745)
T KOG0301|consen 551 AILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR 628 (745)
T ss_pred HHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH
Confidence 334455788999999999999887554333322 1235666666666 3455678899999999877 7777777765
No 310
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=30.98 E-value=1.7e+02 Score=23.87 Aligned_cols=60 Identities=22% Similarity=0.385 Sum_probs=42.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 017926 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 248 (363)
Q Consensus 179 Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~ 248 (363)
.++-|+.+...|+....|++.+.-.. . ..+..+.+-+...+.+-+...+|-+..++++..
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~~~a-----~-----~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~ 64 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHASHA-----K-----EIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSK 64 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHH-----H-----HHHHHHHHHHHhCCccceehhHHhHHHHHHHHh
Confidence 44556677889999999999766432 1 234455555555555667899999999999863
No 311
>PRK11187 replication initiation regulator SeqA; Provisional
Probab=30.50 E-value=78 Score=28.92 Aligned_cols=85 Identities=13% Similarity=0.354 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhccCC-CccccccccccCCCccccccCCccchhhhcccCCcCCCC-CCChHHHH
Q 017926 6 NRIASRALWLLVLLMITMAIGRAERVNNSSS-AGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGG-FSSIDGML 83 (363)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~LL 83 (363)
+..++|.++++-+|-.....+-+.+...+.+ .-+-|++ ++..|+...--..++ ..||. |
T Consensus 86 ~kaV~RFl~iLstLY~~~~~~F~~ate~i~GR~RvYFA~--~e~tLL~sg~~tkPK----------~Ip~Tpf------- 146 (182)
T PRK11187 86 KKAVNRFLLILSTLYRLDPQAFAQATESLHGRTRVYFAR--DEQTLLKAGNSTKPK----------HIPGTPF------- 146 (182)
T ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHccCCcceeecC--CHHHHHHcCCCCCCC----------cCCCCCe-------
Confidence 3568899999999988887776666544443 3344544 444555443333322 22332 3
Q ss_pred hhHhhcCCCCCcccchhcccCCCHHHHHHhHHHHHHHHHHcCCCC
Q 017926 84 QWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPS 128 (363)
Q Consensus 84 ~wsi~~s~~~~~~~~~~~~~~~~~e~l~~r~~~Lkeal~~l~~~~ 128 (363)
|-|.|++.+ ++|..|+++|..|+.|.
T Consensus 147 -WViTNtNT~------------------RKr~ml~~vm~~mg~p~ 172 (182)
T PRK11187 147 -WVITNTNTG------------------RKRSMLEHVMQSMGFPA 172 (182)
T ss_pred -eEEeCCCcH------------------HHHHHHHHHHHHcCCCH
Confidence 999887753 37888999999998864
No 312
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=30.15 E-value=1.2e+02 Score=29.72 Aligned_cols=76 Identities=22% Similarity=0.169 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHcccCCCch--hhHHhcCCHHHHHHhcCCC--CHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHH
Q 017926 146 SLEDSQRALQELLILVEPIDNA--NDLSKLGGLSVLVGQLNHP--DTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 221 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnA--n~l~~lGgl~~Li~lL~s~--~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~L 221 (363)
+.|+....+..++.++.+.+.. ++. ...--..++.++.++ ..++|..|..++..+...+|.. +....+..+
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l 249 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGL 249 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHH
Confidence 5677777777777766655321 222 122234567777776 8999999999999999999874 233334444
Q ss_pred HHhhc
Q 017926 222 MKMVK 226 (363)
Q Consensus 222 l~LL~ 226 (363)
-+.+.
T Consensus 250 ~~~l~ 254 (339)
T PF12074_consen 250 WKWLS 254 (339)
T ss_pred HHHHH
Confidence 44443
No 313
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=29.57 E-value=8.6e+02 Score=27.46 Aligned_cols=184 Identities=21% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhcccCCCHHHHHHhHHHHHHHHHHc---------CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhh
Q 017926 99 AQDVQRLSPSELKKRQMEIKELMEKL---------KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAND 169 (363)
Q Consensus 99 ~~~~~~~~~e~l~~r~~~Lkeal~~l---------~~~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~ 169 (363)
..+.+++..+.+++.++.=+..|..- +..+++..|..++. +-|.-+|+.|+.-+-. -+.
T Consensus 158 ~e~~k~~~~~~VeKl~e~G~~lm~qdae~f~~t~~~~gsd~k~l~siiS-----sGT~~DkitA~~Llvq-------esP 225 (988)
T KOG2038|consen 158 DEDTKEMNKDVVEKLLELGKDLMAQDAELFQETKQDKGSDAKWLYSIIS-----SGTLTDKITAMTLLVQ-------ESP 225 (988)
T ss_pred chhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHh-----cCcchhhhHHHHHhhc-------ccc
Q ss_pred HHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcc--------ChHHHHHHHH------------------------cCc
Q 017926 170 LSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN--------NPLVQKQVLE------------------------LGA 217 (363)
Q Consensus 170 l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqN--------Np~~Q~~~le------------------------~G~ 217 (363)
++.+.-++.|+.+.......--.+|.-+|-.+--| -+..|+-+.+ ...
T Consensus 226 vh~lk~lEtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~Ll~WyfE~~LK~ly~rf 305 (988)
T KOG2038|consen 226 VHNLKSLETLLSSCKKKSKRDALQALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKILLMWYFEHELKILYFRF 305 (988)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcchhhHHHhhChhhhccccccccceehHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCC
Q 017926 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 297 (363)
Q Consensus 218 lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~ 297 (363)
|..|..+-...=..++.++|..|-.++.+-|.....+ +..|+.-|.++ ..++-.+|.++|..|.. .+|
T Consensus 306 ievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~L-----L~~lVNKlGDp--qnKiaskAsylL~~L~~-----~HP 373 (988)
T KOG2038|consen 306 IEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNL-----LVLLVNKLGDP--QNKIASKASYLLEGLLA-----KHP 373 (988)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHH-----HHHHHHhcCCc--chhhhhhHHHHHHHHHh-----hCC
Q ss_pred CcchhHHhC
Q 017926 298 VEPPLFRDR 306 (363)
Q Consensus 298 ~~~~~l~~~ 306 (363)
.-+..++++
T Consensus 374 nMK~Vvi~E 382 (988)
T KOG2038|consen 374 NMKIVVIDE 382 (988)
T ss_pred cceeehHHH
No 314
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=29.55 E-value=95 Score=30.13 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=39.6
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc--------------cHHHHHhcCcHHHHHHhhc
Q 017926 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--------------GQEMFYVEAGDLMLQDILG 268 (363)
Q Consensus 216 G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~--------------a~~~f~~~gG~~~L~~lL~ 268 (363)
..+..+++-|..++...|.+|+.+|.-++.|.-. +...+++.||++.|..+|+
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4566777778777777788888888888777322 3456678899999999974
No 315
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=29.15 E-value=2.5e+02 Score=22.32 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHHhcc----ChHHHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHH
Q 017926 186 PDTDIRKISAWILGKASQN----NPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSL 243 (363)
Q Consensus 186 ~~~~Ir~~Aa~~Lgt~aqN----Np~~Q~~~le~G~lp~Ll~LL~s~~--~~v~~kAL~ALSsL 243 (363)
++-.+|..||.+|+.++.+ ++..|.. .+..|.+.+.+++ .....-|+..|+.+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~R-----i~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPR-----ITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999975 3444444 4567777777554 34567888888887
No 316
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=29.04 E-value=5.3e+02 Score=27.06 Aligned_cols=120 Identities=20% Similarity=0.256 Sum_probs=70.4
Q ss_pred HHhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcC-CCCHH
Q 017926 111 KKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTD 189 (363)
Q Consensus 111 ~~r~~~Lkeal~~l~~~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~-s~~~~ 189 (363)
+++..++..+++.+..|.-++++-+.+. ... .+.+...++ -+..-+.++.|+.+|. +.+++
T Consensus 17 k~~~~~v~~llkHI~~~~ImDlLLklIs-~d~----~~~~~~ile-------------wL~~q~LI~~Li~~L~p~~~~~ 78 (475)
T PF04499_consen 17 KSQPNFVDNLLKHIDTPAIMDLLLKLIS-TDK----PESPTGILE-------------WLAEQNLIPRLIDLLSPSYSSD 78 (475)
T ss_pred HhCccHHHHHHHhcCCcHHHHHHHHHHc-cCc----ccchHHHHH-------------HHHHhCHHHHHHHHhCCCCCHH
Confidence 4455566777887777665555544444 221 122222222 2333567899999996 56788
Q ss_pred HHHHHHHHHHHHhc---cCh----------HHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCc
Q 017926 190 IRKISAWILGKASQ---NNP----------LVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNL 248 (363)
Q Consensus 190 Ir~~Aa~~Lgt~aq---NNp----------~~Q~~~le~G~lp~Ll~LL~s-~~~~v~~kAL~ALSsLiR~~~ 248 (363)
++..|+.+|..+.. |.+ .....+.....+..|++.+-. ........++.-+-.++|.+.
T Consensus 79 ~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknn 151 (475)
T PF04499_consen 79 VQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKNN 151 (475)
T ss_pred HHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcc
Confidence 99999988776643 211 233334555667777765442 233445666667777777653
No 317
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=28.82 E-value=68 Score=28.55 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=25.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhHHHhhccCCCccccccccc
Q 017926 1 MNTRRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKE 46 (363)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (363)
||+||.+ -||+.++..++...+++......+++..+|-|-.+
T Consensus 1 M~~~r~r----Rl~~v~~~~~~~~~a~~Lv~~al~~n~~yF~tpsE 42 (155)
T PRK13159 1 MNATRKQ----RLWLVIGVLTAAALAVTLIVLALQRNMSYLFTPSQ 42 (155)
T ss_pred CChhhhh----HHHHHHHHHHHHHHHHHHHHHHhhhCceEEECHHH
Confidence 7777754 34665555555555657777766666666655433
No 318
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=27.73 E-value=70 Score=28.63 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=24.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhHHHhhccCCCcccccccc
Q 017926 1 MNTRRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAK 45 (363)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (363)
||+||.+ -||+.++..++...+++......+++..+|-|--
T Consensus 1 M~~~r~r----Rl~~v~~~~~~~~~a~~Lvl~al~~n~~yF~tPs 41 (159)
T PRK13150 1 MNLRRKN----RLWVVCAVLAGLGLTTALVLYALRANIDLFYTPG 41 (159)
T ss_pred CChhhhh----HHHHHHHHHHHHHHHHHHHHHHHhhCccEEeCHH
Confidence 7777744 3455555555555555777776666666555543
No 319
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=27.64 E-value=4.1e+02 Score=24.26 Aligned_cols=58 Identities=21% Similarity=0.091 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhccChHHHHHHHHc--Cc--HHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 017926 188 TDIRKISAWILGKASQNNPLVQKQVLEL--GA--LSKLMKMVKSSFVEEAVKALYTVSSLIRN 246 (363)
Q Consensus 188 ~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~--G~--lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~ 246 (363)
.+--.+.+.++++++| -|..++.|++. +. +..|+....+.+.-=|.-++.+|=|+|=+
T Consensus 72 ~~~~~yla~vl~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd 133 (192)
T PF04063_consen 72 KDNYDYLASVLANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD 133 (192)
T ss_pred CcchhHHHHHHHHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc
Confidence 4455688999999998 68899999865 34 77888888877433344566777666643
No 320
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=26.96 E-value=7.5e+02 Score=25.89 Aligned_cols=79 Identities=11% Similarity=0.077 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhh----c--CCCccHHHHHHHHHHHHHHhhhhhhcCCCCcc-hhH
Q 017926 231 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL----G--NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP-PLF 303 (363)
Q Consensus 231 ~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL----~--s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~-~~l 303 (363)
.+...++-+|+|++=+++.+++.|++..-...+.+.+ . .+++....-.+-+|+++.|-. +.+ +.+
T Consensus 112 ~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~--------~~Rsql~ 183 (532)
T KOG4464|consen 112 HVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALET--------DHRSQLI 183 (532)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhH--------HHHHHHH
Confidence 5778999999999999999999999987655444443 2 122233345567777776632 223 333
Q ss_pred HhCCcHHHHHHhcc
Q 017926 304 RDRFFLKSVVDLTA 317 (363)
Q Consensus 304 ~~~g~v~~Lv~lL~ 317 (363)
.+.+.++.+-+.|.
T Consensus 184 ~~l~Gl~~lt~~le 197 (532)
T KOG4464|consen 184 AELLGLELLTNWLE 197 (532)
T ss_pred HHhcccHHHHHHhh
Confidence 45666676666664
No 321
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=26.68 E-value=3.3e+02 Score=24.86 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=33.5
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~ 215 (363)
.+.||-.-|++.++++...+..+|-.++...+.+=++++-+
T Consensus 81 LI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPy 121 (183)
T PF10274_consen 81 LIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPY 121 (183)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 46777788999999999999999999988777666665544
No 322
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=26.18 E-value=1.8e+02 Score=26.16 Aligned_cols=76 Identities=25% Similarity=0.296 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhc
Q 017926 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226 (363)
Q Consensus 147 ~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~ 226 (363)
+|-|..|++-+.-+++.--..-++... +..+..-|.. +.+||..+..+|..+++.+|..-..-++ ..+++|-..|+
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~~~~~--~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~L~ 116 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRIDISEF--LDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKTLS 116 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-HHHH--HHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHH--HHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHhh
Confidence 466777777777666643333334444 6666777766 9999999999999999998865444332 56777777664
No 323
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=25.98 E-value=6e+02 Score=28.60 Aligned_cols=93 Identities=10% Similarity=-0.010 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhc--cChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcC
Q 017926 192 KISAWILGKASQ--NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 269 (363)
Q Consensus 192 ~~Aa~~Lgt~aq--NNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s 269 (363)
..|.+.++++-. .-+.--..++++=.++.++.-+++..--++.+|++-||-+--+++. .-+-....+....|+++
T Consensus 434 egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd---~~ill~aye~t~ncl~n 510 (970)
T COG5656 434 EGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKD---NGILLEAYENTHNCLKN 510 (970)
T ss_pred hhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHHhc
Confidence 445555555443 2222333345555566666666665555688999999988444443 33334556677778887
Q ss_pred CCccHHHHHHHHHHHHHHhh
Q 017926 270 SSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 270 ~~~~~klr~kA~~lL~~L~~ 289 (363)
. +..++..|+.++..+..
T Consensus 511 n--~lpv~ieAalAlq~fi~ 528 (970)
T COG5656 511 N--HLPVMIEAALALQFFIF 528 (970)
T ss_pred C--CcchhhhHHHHHHHHHh
Confidence 4 45588899999999886
No 324
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=25.70 E-value=7.4e+02 Score=27.92 Aligned_cols=130 Identities=15% Similarity=0.068 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhc----CCCC----HHHHHHHHHHH
Q 017926 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL----NHPD----TDIRKISAWIL 198 (363)
Q Consensus 127 ~~d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL----~s~~----~~Ir~~Aa~~L 198 (363)
+..-+.|-..++.+.+....-+--...+.-|.++|.-..|.+.|.++|+++.|+..| ..++ +++-+.-..++
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 344566777777777654444444445555555665568999999999999998755 3444 67777777777
Q ss_pred HHHhccC----hHHHHHHHHcC--------cHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCCcccHHHHHh
Q 017926 199 GKASQNN----PLVQKQVLELG--------ALSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYV 256 (363)
Q Consensus 199 gt~aqNN----p~~Q~~~le~G--------~lp~Ll~LL~s~----~~~v~~kAL~ALSsLiR~~~~a~~~f~~ 256 (363)
-.+.+.- -.....+.... -+..|++-+.+. ++.+....+..|..++.+++...+..++
T Consensus 196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~ 269 (802)
T PF13764_consen 196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE 269 (802)
T ss_pred HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence 7666421 11111111222 266777777654 3456666777778888887776655443
No 325
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.38 E-value=5e+02 Score=25.97 Aligned_cols=100 Identities=12% Similarity=0.129 Sum_probs=58.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhh-cCCCccHHHHHHHHHHHHHHhhhhhhcC
Q 017926 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL-GNSSFEIRLHRKAVSLVGDLAKCQLENM 295 (363)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL-~s~~~~~klr~kA~~lL~~L~~~~~~~~ 295 (363)
.+..+++-+++....|-+.|+-+++-|.......... ...+ .+..++ +...++--++..|..+|..++.+
T Consensus 130 vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~--~ld~--lv~~Ll~ka~~dnrFvreda~kAL~aMV~~----- 200 (334)
T KOG2933|consen 130 VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ--ELDD--LVTQLLHKASQDNRFVREDAEKALVAMVNH----- 200 (334)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH--HHHHHHhhhcccchHHHHHHHHHHHHHHhc-----
Confidence 4556666677766677778888888887664443333 2222 222222 22233456788888888888752
Q ss_pred CCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHHH
Q 017926 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEHV 332 (363)
Q Consensus 296 ~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL~ 332 (363)
. .+ ..+++.|...+++.++.++-++..+..
T Consensus 201 --v-tp----~~~L~~L~~~~~~~n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 201 --V-TP----QKLLRKLIPILQHSNPRVRAKAALCFS 230 (334)
T ss_pred --c-Ch----HHHHHHHHHHHhhhchhhhhhhhcccc
Confidence 1 11 234556666677777777776665543
No 326
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=25.34 E-value=3e+02 Score=22.91 Aligned_cols=100 Identities=17% Similarity=0.103 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccCCCc-hhhH--HhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhc
Q 017926 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-ANDL--SKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQ 203 (363)
Q Consensus 131 ~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~iDn-An~l--~~lGgl~~Li~lL~s----~~~~Ir~~Aa~~Lgt~aq 203 (363)
..++.+++.|...+.+.|..+.||...+.||...-. .+.+ +.......|+.+=++ +-.+.|..|+-++...+
T Consensus 3 vYlrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~- 81 (114)
T PF10193_consen 3 VYLRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAA- 81 (114)
T ss_dssp --HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHS-
T ss_pred chHHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHh-
Confidence 346777777775554567778899999999987533 2222 222333344433221 23678888877777654
Q ss_pred cChHHHHHHHHcCcHHHHHHhhcCCCHH--HHHHHHHHHH
Q 017926 204 NNPLVQKQVLELGALSKLMKMVKSSFVE--EAVKALYTVS 241 (363)
Q Consensus 204 NNp~~Q~~~le~G~lp~Ll~LL~s~~~~--v~~kAL~ALS 241 (363)
| ..+.|.|.+.+-+++-+ .|.-.|.+|+
T Consensus 82 --P--------~~~~~~L~~~f~~~~~Sl~qR~~iL~~l~ 111 (114)
T PF10193_consen 82 --P--------EKVAPYLTEEFFSGDYSLQQRMSILSALS 111 (114)
T ss_dssp --G--------GGHHH-HHHHHTTS---THHHHHHHHHHH
T ss_pred --h--------HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4 13456677777665533 3555565554
No 327
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=25.30 E-value=80 Score=22.31 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 017926 4 RRNRIASRALWLLVLLMITMAIG 26 (363)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (363)
|||+.+-.++++++++++.+..+
T Consensus 13 ~~nk~a~~gl~il~~~vl~ai~~ 35 (56)
T PF12911_consen 13 RRNKLAVIGLIILLILVLLAIFA 35 (56)
T ss_pred HhCchHHHHHHHHHHHHHHHHHH
Confidence 78899999999998888877766
No 328
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=25.16 E-value=6.1e+02 Score=24.26 Aligned_cols=98 Identities=10% Similarity=0.085 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHh--cCcHHH
Q 017926 185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLM 262 (363)
Q Consensus 185 s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~--~gG~~~ 262 (363)
.++...-..|..+|+.. .+.-++|+|+++++.++..+- +-++-.+.. .....+.. .|-++.
T Consensus 53 ~~~~~~~~~a~~LLaq~-----------re~~A~~~li~l~~~~~~~~~----~l~GD~~tE--~l~~ilasv~~G~~~~ 115 (249)
T PF06685_consen 53 DEEYNLHFYALYLLAQF-----------REERALPPLIRLFSQDDDFLE----DLFGDFITE--DLPRILASVGDGDIEP 115 (249)
T ss_pred CcchHHHHHHHHHHHHH-----------hhhhhHHHHHHHHcCCcchHH----HHHcchhHh--HHHHHHHHHhCCCHHH
Confidence 33444456677776643 345789999999987654210 001111111 11122222 234777
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHH
Q 017926 263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 304 (363)
Q Consensus 263 L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~ 304 (363)
|..++.+++.+..+|.-|..++..++. .++..++.++
T Consensus 116 L~~li~~~~~~~yvR~aa~~aL~~l~~-----~~~~~Re~vi 152 (249)
T PF06685_consen 116 LKELIEDPDADEYVRMAAISALAFLVH-----EGPISREEVI 152 (249)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHH-----cCCCCHHHHH
Confidence 888888777777888888888888886 3555555554
No 329
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.04 E-value=3.8e+02 Score=30.00 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 017926 231 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 289 (363)
Q Consensus 231 ~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~ 289 (363)
-+|..|+.|++.+..+++ +.......+|.+|+.+. |..+|-+|.|.+..+-.
T Consensus 481 ivRaaAv~alaKfg~~~~-----~l~~sI~vllkRc~~D~--DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 481 IVRAAAVSALAKFGAQDV-----VLLPSILVLLKRCLNDS--DDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhHHHHHHHHHHHhcCCC-----CccccHHHHHHHHhcCc--hHHHHHHHHHHHHHhhh
Confidence 456778888877763333 33345567888888876 67799999999999874
No 330
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=24.58 E-value=1.6e+02 Score=24.33 Aligned_cols=129 Identities=19% Similarity=0.147 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhccC-hHHHHHHHHcCcHHHHHHhhcCCCHHH--HHHHHHHHHHHhcCCc-----ccH-HH----HH
Q 017926 189 DIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSFVEE--AVKALYTVSSLIRNNL-----AGQ-EM----FY 255 (363)
Q Consensus 189 ~Ir~~Aa~~Lgt~aqNN-p~~Q~~~le~G~lp~Ll~LL~s~~~~v--~~kAL~ALSsLiR~~~-----~a~-~~----f~ 255 (363)
-|+...|.+++.++... |..- -..++.++++++++.... -...+..++--+.++. ..+ .. +.
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~W-----p~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~ 77 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQW-----PDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALR 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS-----TTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhC-----chHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH
Confidence 46777777887777421 1110 146777888877743221 2345555555444321 011 11 11
Q ss_pred hc--CcHHHHHHhhcCCCc--cHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHH
Q 017926 256 VE--AGDLMLQDILGNSSF--EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEH 331 (363)
Q Consensus 256 ~~--gG~~~L~~lL~s~~~--~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL 331 (363)
+. .-++.+.+++..... ...+..++..++.+.+.. .....+.+.++++.+.++|.+ +++++.|+.||
T Consensus 78 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~-------~~~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 78 SNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISW-------IPIELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT-------S-HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh-------CCHHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 11 234555555554321 166788888888888753 335667778899999999954 45699888875
No 331
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.45 E-value=2.4e+02 Score=31.50 Aligned_cols=94 Identities=15% Similarity=0.044 Sum_probs=51.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCC
Q 017926 217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 296 (363)
Q Consensus 217 ~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~ 296 (363)
+=|.+-+++.+.++-+|..-+|++..---+.. ..+.+..|++.--++. +.-+|+-|+-.|.-++.
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~-nDDVrRaAVialGFVl~------- 584 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLF------- 584 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhccccccc-chHHHHHHHHHheeeEe-------
Confidence 33444455555555556666666654222211 1123444444433332 34478877777776664
Q ss_pred CCcchhHHhCCcHHHHHHhccCC-ChhHHHHHHHHHH
Q 017926 297 KVEPPLFRDRFFLKSVVDLTASA-DLDLQEKVFLEHV 332 (363)
Q Consensus 297 ~~~~~~l~~~g~v~~Lv~lL~~~-d~~lqE~al~aL~ 332 (363)
.+...+++.|++|... ++-+|--++-||+
T Consensus 585 -------~dp~~~~s~V~lLses~N~HVRyGaA~ALG 614 (929)
T KOG2062|consen 585 -------RDPEQLPSTVSLLSESYNPHVRYGAAMALG 614 (929)
T ss_pred -------cChhhchHHHHHHhhhcChhhhhhHHHHHh
Confidence 2344567777777755 7777777777766
No 332
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=23.95 E-value=1.7e+02 Score=26.23 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=23.8
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc
Q 017926 181 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 215 (363)
Q Consensus 181 ~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~ 215 (363)
.++.+++.-||...+|+|..+...+|..-..+++.
T Consensus 162 ~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 162 ALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 34456677788888888888888777777666655
No 333
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.84 E-value=1.5e+02 Score=35.03 Aligned_cols=143 Identities=14% Similarity=0.135 Sum_probs=85.1
Q ss_pred cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccH
Q 017926 173 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 251 (363)
Q Consensus 173 lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~-G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~ 251 (363)
+|.+|.|-.-|.+++...|..|...+|.+.+.+. +|-. -.+ ......+.=+..-+.++|.+++-.++.++-++|...
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~-~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD-SQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch-hhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh
Confidence 4667777777888999999999999999998543 3332 111 234444455556677899999999998888877644
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhhhhcCCCCcchhHHhCCcHHHHHHhccCCChhHHHHHHHHH
Q 017926 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKVFLEH 331 (363)
Q Consensus 252 ~~f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~~~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~~lqE~al~aL 331 (363)
.... -...+.. .+...++++|+.++........ +.-.+... ++..+.+.++.....+|..|+..|
T Consensus 336 ~~~~---~~~~l~~--~~~D~~~rir~~v~i~~~~v~~---------~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~L 400 (1266)
T KOG1525|consen 336 KAST---ILLALRE--RDLDEDVRVRTQVVIVACDVMK---------FKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGL 400 (1266)
T ss_pred hHHH---HHHHHHh--hcCChhhhheeeEEEEEeehhH---------hhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3221 1111221 2211233333332222222211 11122223 667777777777889999988886
Q ss_pred H
Q 017926 332 V 332 (363)
Q Consensus 332 ~ 332 (363)
.
T Consensus 401 a 401 (1266)
T KOG1525|consen 401 A 401 (1266)
T ss_pred H
Confidence 6
No 334
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.63 E-value=4.4e+02 Score=29.89 Aligned_cols=70 Identities=13% Similarity=0.059 Sum_probs=56.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcc
Q 017926 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 249 (363)
Q Consensus 179 Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~ 249 (363)
-+..+.++.+.+|.++..-|..+..+-.+++. +..++++...+.+|++.++-+--.|+..+.++|.-+|.
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~-~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e 801 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKATL-IQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE 801 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcchhhh-hhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch
Confidence 34556678899999999999999998755554 45679999999999998887777888888888765554
No 335
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=22.95 E-value=5.5e+02 Score=22.95 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHcccCCCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHH
Q 017926 146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV 208 (363)
Q Consensus 146 s~e~k~~AL~~L~~Lve~iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~ 208 (363)
+...+..|++-+.-.+++ ...|- .-.+|.|+.+..++++.+|..|-.++..+.+.+|..
T Consensus 21 ~~~vr~~Al~~l~~il~q-GLvnP---~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 21 DDSVRLAALQVLELILRQ-GLVNP---KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred CHHHHHHHHHHHHHHHhc-CCCCh---HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 446677788877765553 22222 236888999999999999999999999999877644
No 336
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=22.89 E-value=2.3e+02 Score=34.55 Aligned_cols=59 Identities=8% Similarity=0.178 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHHhccChHHHHHHHHc---CcHHHHHHhhcCCC-HHHHHHHHHHHHHHhc
Q 017926 187 DTDIRKISAWILGKASQNNPLVQKQVLEL---GALSKLMKMVKSSF-VEEAVKALYTVSSLIR 245 (363)
Q Consensus 187 ~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~---G~lp~Ll~LL~s~~-~~v~~kAL~ALSsLiR 245 (363)
+...-..-..+|+.++++++..+..+.+. ..++.|++++..+- ..++...+.+|++++.
T Consensus 577 e~~~L~a~L~Li~~V~~~s~~ar~~l~~~~~~~~~~~L~~L~~~~vp~~Lkaai~~~Laal~~ 639 (1691)
T PF11894_consen 577 EVEMLSAYLRLISSVVRNSEQARSALLENPNWNPIDILFGLLSCPVPPSLKAAIFNALAALAA 639 (1691)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCchHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 34445667788999999999999999875 47999999999864 4689999999999963
No 337
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=21.74 E-value=1.5e+02 Score=33.38 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=17.8
Q ss_pred CCCHHHHHHhHHHHHHHHHHc
Q 017926 104 RLSPSELKKRQMEIKELMEKL 124 (363)
Q Consensus 104 ~~~~e~l~~r~~~Lkeal~~l 124 (363)
.-|+|||++.|++|+++|+.+
T Consensus 519 gAsdeEI~~Lm~eLR~Am~~y 539 (851)
T TIGR02302 519 GASDEEIKQLTDKLRAAMQTY 539 (851)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999754
No 338
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.58 E-value=98 Score=27.72 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=24.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhHHHhhccCCCcccccccc
Q 017926 1 MNTRRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAK 45 (363)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (363)
|+++|.+ -||+.+++.++...+.+......+++..+|-|--
T Consensus 1 M~~~~~r----Rl~~~~~~~~~~~~a~~L~l~al~~n~~yF~tPs 41 (160)
T PRK13165 1 MNPRRKK----RLWLACAVLAGLALTIGLVLYALRSNIDLFYTPG 41 (160)
T ss_pred CCccchh----hHHHHHHHHHHHHHHHHHHHHHHhhCccEEeCHH
Confidence 6665543 2566666666555555777776666666655543
No 339
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=21.48 E-value=4.4e+02 Score=29.79 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcccC-CCchhhHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhccChH
Q 017926 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL 207 (363)
Q Consensus 129 d~~lmk~al~~L~~~~~s~e~k~~AL~~L~~Lve~-iDnAn~l~~lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~ 207 (363)
+++++.+.++.|.++.. .++...++-|.+-|-. .|-|- -+|.+-+..++.-=.+...--+..|...||++.-.-
T Consensus 23 ~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~pgvd~aa-~vka~fl~~i~~~~~~~~~i~~~~a~~~l~~m~gg~-- 97 (844)
T TIGR00117 23 NANQMAALVELLKNPPA--GEEEFLLDLLTNRVPPGVDEAA-YVKAGFLAAIAKGEAKCPLISPEKAIELLGTMQGGY-- 97 (844)
T ss_pred CHHHHHHHHHHhcCCCC--ccHHHHHHHHHhCCCCCCChHH-HHHHHHHHHHHcCCCCCcccCHHHHHHHHhhccCCC--
Confidence 45666666666665532 2222344444444443 23322 222222222222111112222456667777665321
Q ss_pred HHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 017926 208 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 244 (363)
Q Consensus 208 ~Q~~~le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLi 244 (363)
=+++|+.+|.+++.++...|.-+|+..+
T Consensus 98 ---------~~~~l~~~~~~~~~~~a~~a~~~l~~~~ 125 (844)
T TIGR00117 98 ---------NVHPLIDALDSQDANIAPIAAKALSHTL 125 (844)
T ss_pred ---------CHHHHHHHHhCCCHHHHHHHHHHHhceE
Confidence 1677888887777777777777777644
No 340
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=21.03 E-value=6.3e+02 Score=22.94 Aligned_cols=148 Identities=18% Similarity=0.134 Sum_probs=75.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHH--HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh-cCCcccHHH
Q 017926 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV--LELGALSKLMKMVKSSFVEEAVKALYTVSSLI-RNNLAGQEM 253 (363)
Q Consensus 177 ~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~--le~G~lp~Ll~LL~s~~~~v~~kAL~ALSsLi-R~~~~a~~~ 253 (363)
|.|+.||+..+ ++.....+||.++.- +...+ +..|+.+-|.+.+-+.+.....||.+-..+|- .-+......
T Consensus 6 plLIsCL~~q~--~k~s~~KiL~~iVs~---Va~~v~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~ 80 (174)
T PF04510_consen 6 PLLISCLTMQE--TKESDFKILRRIVSH---VAYEVFDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIP 80 (174)
T ss_pred HHHHHHHHhhc--ccHhHHHHHHHHHHH---HHHHHHhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHH
Confidence 45678997532 222233344444321 11123 35688888888877654444588888888875 333333344
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhhh-hhcCCCCcchhHHh--CCcHHHHHHhccCCCh-hHHHHHHH
Q 017926 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ-LENMHKVEPPLFRD--RFFLKSVVDLTASADL-DLQEKVFL 329 (363)
Q Consensus 254 f~~~gG~~~L~~lL~s~~~~~klr~kA~~lL~~L~~~~-~~~~~~~~~~~l~~--~g~v~~Lv~lL~~~d~-~lqE~al~ 329 (363)
|++. -++.+...|.++. +.......+.+.+..+... +. ..+.-.+.+.+ +.+++++-+++..+.. .+.-++++
T Consensus 81 ~~~~-L~~~~~~~L~~p~-~~d~~~W~LAl~~a~~~~Iql~-e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~ 157 (174)
T PF04510_consen 81 FMEN-LLPEISKVLLPPE-EVDVEDWVLALTGAVCMAIQLL-ESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLR 157 (174)
T ss_pred HHHH-HHHHHHHHcCCch-hccHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4443 5666777777663 2233333444434333211 10 11111222221 2466777777777743 66666655
Q ss_pred HHH
Q 017926 330 EHV 332 (363)
Q Consensus 330 aL~ 332 (363)
-+.
T Consensus 158 ~~e 160 (174)
T PF04510_consen 158 DFE 160 (174)
T ss_pred HHH
Confidence 544
No 341
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=20.68 E-value=1.7e+02 Score=24.31 Aligned_cols=45 Identities=11% Similarity=-0.021 Sum_probs=38.2
Q ss_pred cCCCCHHHHHHHHHHHHHHhcc-ChHHHHHHHHcCcHHHHHHhhcC
Q 017926 183 LNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKS 227 (363)
Q Consensus 183 L~s~~~~Ir~~Aa~~Lgt~aqN-Np~~Q~~~le~G~lp~Ll~LL~s 227 (363)
++..+-++-.++..+|...+|. ++..|..+.+..++..+..+|..
T Consensus 62 ~~~~~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~~ 107 (109)
T PF08454_consen 62 INSDNIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLSK 107 (109)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHhh
Confidence 3455667778899999999998 99999999999999998888864
No 342
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.57 E-value=4e+02 Score=29.73 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=45.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 017926 218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVG 285 (363)
Q Consensus 218 lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~~f~~-~gG~~~L~~lL~s~~~~~klr~kA~~lL~ 285 (363)
+..++.-+.+.......++|.+||=--+---+..+++++ +||+..+...|.+.+.+..+-..+..+++
T Consensus 334 ~~yiLStlq~~~~~m~trCLSaISla~Kc~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMy 402 (865)
T KOG2152|consen 334 LEYILSTLQSALLPMETRCLSAISLADKCVMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMY 402 (865)
T ss_pred HHHHHhhhhhccccHHHHHHhhhhhhhhccChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHH
Confidence 455666666654567889999999766655566777665 68999999988776555545444443333
No 343
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=20.55 E-value=1.6e+02 Score=21.63 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=25.6
Q ss_pred CCHHHHHHhc-C-CCCHHHHHHHHHHHHHHhccC
Q 017926 174 GGLSVLVGQL-N-HPDTDIRKISAWILGKASQNN 205 (363)
Q Consensus 174 Ggl~~Li~lL-~-s~~~~Ir~~Aa~~Lgt~aqNN 205 (363)
|-+..++.++ + +.++.+|..|+-.|-+.+..+
T Consensus 14 ~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~ 47 (77)
T PF03810_consen 14 GFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKN 47 (77)
T ss_dssp CHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc
Confidence 5667778888 4 348999999999999988755
No 344
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=20.48 E-value=8.5e+02 Score=24.24 Aligned_cols=124 Identities=12% Similarity=0.075 Sum_probs=79.2
Q ss_pred HHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCcccHHHHHhc-CcHHHHHHh-hcCCC--c-cHHHHHHHHH
Q 017926 209 QKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDI-LGNSS--F-EIRLHRKAVS 282 (363)
Q Consensus 209 Q~~~le~G~lp~Ll~LL~s~~-~~v~~kAL~ALSsLiR~~~~a~~~f~~~-gG~~~L~~l-L~s~~--~-~~klr~kA~~ 282 (363)
-+++++.+.+.+|.++-..+. +.++..++..++.++..-. +.|..+ .-...+.++ ++... . ...+...-+.
T Consensus 2 lEyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~---~plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~ 78 (353)
T PF10257_consen 2 LEYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQ---QPLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVE 78 (353)
T ss_pred hHHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcc---cccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHH
Confidence 467788899999999998854 5789999999999997532 224443 334566666 44321 1 3446777788
Q ss_pred HHHHHhhhhhhcCCCCcchhHHh--------------------------CCcHHHHHHhccCCChhHHHHHHHHHHhhcc
Q 017926 283 LVGDLAKCQLENMHKVEPPLFRD--------------------------RFFLKSVVDLTASADLDLQEKVFLEHVFCGL 336 (363)
Q Consensus 283 lL~~L~~~~~~~~~~~~~~~l~~--------------------------~g~v~~Lv~lL~~~d~~lqE~al~aL~~~~~ 336 (363)
++..+|... +.+|...+.|.+ -.+...|+..+.+. -.+-++|-.+|.+|..
T Consensus 79 lL~~lc~~i--~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~ 155 (353)
T PF10257_consen 79 LLNTLCSKI--RKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMS 155 (353)
T ss_pred HHHHHHHHH--HhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHh
Confidence 888888642 123333333222 23456778887775 5566677777776555
Q ss_pred cc
Q 017926 337 VF 338 (363)
Q Consensus 337 ~~ 338 (363)
+.
T Consensus 156 l~ 157 (353)
T PF10257_consen 156 LA 157 (353)
T ss_pred CC
Confidence 55
No 345
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=20.28 E-value=6.7e+02 Score=22.91 Aligned_cols=77 Identities=12% Similarity=0.083 Sum_probs=53.2
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhccChHHHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCcccHH
Q 017926 175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252 (363)
Q Consensus 175 gl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aqNNp~~Q~~~le~--G~lp~Ll~LL~s~~~~v~~kAL~ALSsLiR~~~~a~~ 252 (363)
-+|.+++-|...+...+..|...+-.+.+. ...+.++-. ..+++|-.-|.+.++++...+|.+|..|++.++..-.
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~--~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLER--GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 356666777777778888888888877765 223333322 4556666777788889999999999999877554333
Q ss_pred H
Q 017926 253 M 253 (363)
Q Consensus 253 ~ 253 (363)
+
T Consensus 117 a 117 (183)
T PF10274_consen 117 A 117 (183)
T ss_pred H
Confidence 3
No 346
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.20 E-value=4.1e+02 Score=30.42 Aligned_cols=90 Identities=19% Similarity=0.134 Sum_probs=65.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHcccCC-CchhhHHh--cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc-cChHHHH
Q 017926 135 IAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSK--LGGLSVLVGQLNHPDTDIRKISAWILGKASQ-NNPLVQK 210 (363)
Q Consensus 135 ~al~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnAn~l~~--lGgl~~Li~lL~s~~~~Ir~~Aa~~Lgt~aq-NNp~~Q~ 210 (363)
+++..|.++ +.--++.||+.|...+.-+ +.-|.|.. .-.||+++.++...++-+-..|+.||-++.. .-..++.
T Consensus 807 r~~~~LS~e--~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~s 884 (1014)
T KOG4524|consen 807 RGIHLLSHE--SLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVAS 884 (1014)
T ss_pred HHHHHhcch--hHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344444433 4566788899888765543 34455554 4689999999999999999999999988875 4567777
Q ss_pred HHHHcCcHHHHHHhhcC
Q 017926 211 QVLELGALSKLMKMVKS 227 (363)
Q Consensus 211 ~~le~G~lp~Ll~LL~s 227 (363)
.+++ .++|.|=.++..
T Consensus 885 R~l~-dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 885 RFLE-DVLPWLKHLCQD 900 (1014)
T ss_pred HHHH-HHHHHHHHHHHH
Confidence 7765 578888777654
Done!