Query 017928
Match_columns 363
No_of_seqs 344 out of 1945
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 07:10:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nlt_A Protein YDJ1, mitochond 100.0 2.3E-65 7.8E-70 480.4 21.9 234 55-292 7-248 (248)
2 3agx_A DNAJ homolog subfamily 100.0 3.2E-49 1.1E-53 354.3 20.4 177 59-295 2-179 (181)
3 3lz8_A Putative chaperone DNAJ 100.0 1.9E-49 6.6E-54 385.8 19.8 203 24-299 116-319 (329)
4 2q2g_A HSP40 protein, heat sho 100.0 4E-48 1.4E-52 346.9 20.7 177 58-295 2-179 (180)
5 1c3g_A Heat shock protein 40; 100.0 1.6E-45 5.3E-50 327.2 15.6 169 60-292 1-170 (170)
6 3i38_A Putative chaperone DNAJ 100.0 9.6E-29 3.3E-33 203.7 10.1 96 200-298 2-97 (109)
7 1xao_A YDJ1, mitochondrial pro 99.9 2E-26 6.9E-31 193.3 9.0 94 204-298 1-99 (121)
8 2ctt_A DNAJ homolog subfamily 99.9 1.9E-25 6.4E-30 182.5 0.6 103 59-165 1-103 (104)
9 1exk_A DNAJ protein; extended 99.6 1E-16 3.4E-21 124.0 5.0 78 76-157 1-78 (79)
10 1nlt_A Protein YDJ1, mitochond 99.4 3.4E-13 1.2E-17 126.0 9.1 131 70-212 40-246 (248)
11 3i38_A Putative chaperone DNAJ 99.1 4.3E-11 1.5E-15 98.1 5.0 51 160-212 39-89 (109)
12 1xao_A YDJ1, mitochondrial pro 99.1 1.1E-10 3.6E-15 97.5 6.6 57 159-215 34-94 (121)
13 2q2g_A HSP40 protein, heat sho 98.8 6.5E-09 2.2E-13 92.4 6.8 50 160-209 121-171 (180)
14 3agx_A DNAJ homolog subfamily 98.8 6.4E-09 2.2E-13 92.5 6.7 51 160-210 121-172 (181)
15 1c3g_A Heat shock protein 40; 98.7 6.7E-09 2.3E-13 91.4 4.9 50 160-209 115-165 (170)
16 3lz8_A Putative chaperone DNAJ 98.6 5.8E-08 2E-12 94.0 6.2 75 207-282 138-226 (329)
17 3pmq_A Decaheme cytochrome C M 98.2 1.6E-08 5.5E-13 105.7 -8.8 78 63-140 168-257 (669)
18 3lcz_A YCZA, inhibitor of trap 98.0 1.9E-06 6.5E-11 61.1 1.4 30 129-158 9-38 (53)
19 2ctt_A DNAJ homolog subfamily 97.9 7.2E-06 2.5E-10 66.1 3.6 47 86-144 45-96 (104)
20 1exk_A DNAJ protein; extended 97.9 6.9E-06 2.4E-10 62.6 3.1 46 85-142 27-77 (79)
21 2bx9_A Anti-trap, AT, tryptoph 97.8 2.1E-06 7.2E-11 60.9 -0.0 39 86-127 9-48 (53)
22 2bx9_A Anti-trap, AT, tryptoph 97.3 0.0001 3.5E-09 52.1 2.5 27 130-156 10-36 (53)
23 3lcz_A YCZA, inhibitor of trap 97.2 0.00014 4.7E-09 51.5 2.2 26 87-115 10-35 (53)
24 1bq0_A DNAJ, HSP40; chaperone, 93.8 0.018 6.1E-07 45.7 1.2 36 1-37 64-101 (103)
25 2qkd_A Zinc finger protein ZPR 84.9 2.7 9.2E-05 41.3 8.4 26 227-256 295-320 (404)
26 2qkd_A Zinc finger protein ZPR 84.3 1.4 4.8E-05 43.3 6.1 26 227-256 87-112 (404)
27 1ltl_A DNA replication initiat 67.9 6.3 0.00022 36.4 5.3 83 104-198 135-222 (279)
28 1msz_A DNA-binding protein smu 46.3 13 0.00044 28.4 2.8 25 276-300 35-59 (86)
29 2vl6_A SSO MCM N-TER, minichro 38.9 1.1E+02 0.0037 27.6 8.4 81 104-197 142-234 (268)
30 1ltl_A DNA replication initiat 36.6 28 0.00097 31.9 4.0 62 128-196 133-203 (279)
31 1y0p_A Fumarate reductase flav 30.2 3.8 0.00013 41.5 -3.4 65 88-152 13-88 (571)
32 1qo8_A Flavocytochrome C3 fuma 29.3 2.1 7.3E-05 43.3 -5.5 66 88-153 14-86 (566)
33 3zxf_A Galectin-7; sugar bindi 27.7 97 0.0033 25.0 5.5 43 239-281 9-59 (138)
34 2bx2_L Ribonuclease E, RNAse E 25.3 21 0.00073 36.0 1.1 14 130-143 409-422 (517)
35 2pn2_A Uncharacterized protein 24.8 70 0.0024 26.5 4.2 26 271-296 107-132 (155)
36 2vl6_A SSO MCM N-TER, minichro 24.1 80 0.0027 28.5 4.8 22 158-179 210-235 (268)
37 2fcg_F Cationic, antibacterial 23.4 28 0.00095 20.4 0.9 10 343-352 11-20 (26)
38 2aus_D NOP10, ribosome biogene 21.2 47 0.0016 23.5 1.9 7 130-136 18-24 (60)
39 1tfi_A Transcriptional elongat 20.6 1E+02 0.0034 20.7 3.5 34 103-136 9-44 (50)
No 1
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=100.00 E-value=2.3e-65 Score=480.42 Aligned_cols=234 Identities=27% Similarity=0.505 Sum_probs=210.3
Q ss_pred CCCCCCcEEEEEEeehhhhhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCccee-eeecCC
Q 017928 55 TVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFS-QVSVCP 133 (363)
Q Consensus 55 ~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~ 133 (363)
++++|+|++++|+|||+|||+|++++|.+++.+.|+.|+|+|+++++ ..+|+.|+|+|++++.+++++ +++ ++++|+
T Consensus 7 ~~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~ 84 (248)
T 1nlt_A 7 GPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGP-MIQRFQTECD 84 (248)
T ss_dssp -CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSS-EEEEEECSCT
T ss_pred CCCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCc-eEEEEEEcCC
Confidence 34689999999999999999999999999999999999999999998 499999999999988888777 554 458999
Q ss_pred CCCcccEEe--ceeeeecCCCcEEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcc
Q 017928 134 SCGGEGEVI--SEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGID 211 (363)
Q Consensus 134 ~C~G~G~vi--~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~D 211 (363)
.|+|+|++| +++|+.|+|.|++++.++|+|+|||||++|++|+|+|+|++++ ++++|||||+|++++|+.|+|+|+|
T Consensus 85 ~C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~-~g~~GDl~v~i~v~~h~~F~R~G~D 163 (248)
T 1nlt_A 85 VCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHKSFKRDGDD 163 (248)
T ss_dssp TCSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCCSSCEEETTE
T ss_pred CCCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCC-CCCcceEEEEEEEecCccceeeCCE
Confidence 999999999 8999999999999999999999999999999999999999976 5699999999999999999999999
Q ss_pred eeEEEEeceEEeecCcEEEEeccCce-EEEecCCC--CCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCC--CCHH
Q 017928 212 LFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNR--ISAK 286 (363)
Q Consensus 212 L~~~~~I~l~eAllG~~~~v~tldG~-~~l~ip~g--tq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~--l~~~ 286 (363)
||++++|+|+|||||++++|+||||+ +.|+|||| ||||++++|+|+|||..+.+ .+|||||+|+|+||++ ||++
T Consensus 164 L~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~-~~GDL~V~~~V~~P~~~~Ls~~ 242 (248)
T 1nlt_A 164 LVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHFTSEE 242 (248)
T ss_dssp EEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSC-SBCCEEEEEEEECCC-------
T ss_pred EEEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCC-CcCCEEEEEEEECCCCCCCCHH
Confidence 99999999999999999999999996 89999999 99999999999999987665 6899999999999999 9999
Q ss_pred HHHHHH
Q 017928 287 ERELLE 292 (363)
Q Consensus 287 q~~ll~ 292 (363)
|+++|+
T Consensus 243 q~~~l~ 248 (248)
T 1nlt_A 243 NLKKLE 248 (248)
T ss_dssp ------
T ss_pred HHHhhC
Confidence 999985
No 2
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=100.00 E-value=3.2e-49 Score=354.32 Aligned_cols=177 Identities=25% Similarity=0.369 Sum_probs=159.4
Q ss_pred CCcEEEEEEeehhhhhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcc
Q 017928 59 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 138 (363)
Q Consensus 59 g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~ 138 (363)
++|++++|+|||+|||+|+++++.+.+
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~----------------------------------------------------- 28 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISH----------------------------------------------------- 28 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEE-----------------------------------------------------
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEec-----------------------------------------------------
Confidence 468999999999999999999987642
Q ss_pred cEEeceeeeecCCCcEEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEe
Q 017928 139 GEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISI 218 (363)
Q Consensus 139 G~vi~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I 218 (363)
+|..|+|.|++++.++++|+||||+++|++|+|+|+|++++ ++++|||||+|++++|+.|+|+|+|||++++|
T Consensus 29 ------~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~-~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~I 101 (181)
T 3agx_A 29 ------KRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGSDVIYPARI 101 (181)
T ss_dssp ------EEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCS-SSCCCCEEEEEEECCCSSCEEETTEEEEEEEE
T ss_pred ------ccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCC-CCCcccEEEEEEEeccccceeeCCcEEEEEEc
Confidence 24445555666778999999999999999999999999987 67999999999999999999999999999999
Q ss_pred ceEEeecCcEEEEeccCce-EEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHH
Q 017928 219 SYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELA 295 (363)
Q Consensus 219 ~l~eAllG~~~~v~tldG~-~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~ 295 (363)
+|+|||||++++|+||||+ +.|+||++||||++++|+|+|||..+.++.+|||||+|+|++|++||++|+++|++|+
T Consensus 102 sl~eAllG~~i~v~tldG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~l~~~~ 179 (181)
T 3agx_A 102 SLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 179 (181)
T ss_dssp EHHHHHHCEEEEEECTTSCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHHHHHHS
T ss_pred CHHHHhCCCEEEeECCCCCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhc
Confidence 9999999999999999996 8899999999999999999999987655578999999999999999999999999996
No 3
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=1.9e-49 Score=385.78 Aligned_cols=203 Identities=28% Similarity=0.483 Sum_probs=162.1
Q ss_pred ChhhhhhhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEEeehhhhhcCCeEEEEEeeeEeccCCCCCceeeCcee
Q 017928 24 NPFDLFETFFGPSMGGFPGMNQTGFRTRRRSTVTKGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKM 103 (363)
Q Consensus 24 ~~~diF~~fFG~~~gg~~~~~~~g~~~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~ 103 (363)
++.|||++|||++ +++ + +++++++|+|+.++|.|||+|+|+|++++|.+++.+.|
T Consensus 116 ~f~diF~~~Fg~~--g~~--------~-~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~-------------- 170 (329)
T 3lz8_A 116 DFDDIFSSMFGQQ--AHQ--------R-RRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN-------------- 170 (329)
T ss_dssp --------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC--------------
T ss_pred chhhhhHhhhcCc--CCC--------C-CCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec--------------
Confidence 5678999998731 110 1 11224689999999999999999999999999875422
Q ss_pred eeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCcEEeeceEEEEEeCCCCCCCcEEEEccCcCC
Q 017928 104 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDA 183 (363)
Q Consensus 104 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~ 183 (363)
+.|++ .+...++|+|+||||+++|++|+|+|+|++
T Consensus 171 -------g~G~v--------------------------------------~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~ 205 (329)
T 3lz8_A 171 -------VFGMI--------------------------------------ESETPKTLNVKIPAGVVDGQRIRLKGQGTP 205 (329)
T ss_dssp -------SCC-C--------------------------------------CEEEEEEEEEEECTTCCTTCEEEESSCSCC
T ss_pred -------CCeEE--------------------------------------EEecceEEEEeCCCCCCCCCEEEEcccccC
Confidence 12221 123356899999999999999999999999
Q ss_pred CCCCCCCccEEEEEEEEeccccccCCcceeEEEEeceEEeecCcEEEEeccCceEEEecCCCCCCCcEEEEccCCCCCCC
Q 017928 184 GPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLN 263 (363)
Q Consensus 184 ~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tldG~~~l~ip~gtq~g~~~~l~g~G~P~~~ 263 (363)
++.++++|||||+|+|++|+.|+|+|+||+++++|+|+|||||++++|+||||++.|+||+|||||++++|+|+|||..
T Consensus 206 g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~v~l~ip~gt~~g~~~rl~G~GmP~~- 284 (329)
T 3lz8_A 206 GENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSK- 284 (329)
T ss_dssp C---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBCS-
T ss_pred CCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCCEEEEECCCCCCCCEEEEcCCCCCCC-
Confidence 8888899999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCccEEEEEEEEcCCCCCHHHHHHHHHHHh-hcC
Q 017928 264 KPSIRGDHLFTVKVTIPNRISAKERELLEELAS-LRN 299 (363)
Q Consensus 264 ~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~~-~~~ 299 (363)
..||||||+|+|+||++||++|+++|++|++ ...
T Consensus 285 --~~rGDL~v~~~V~~P~~l~~~q~~~l~~~~~~~~~ 319 (329)
T 3lz8_A 285 --THTGDLFAVIKIVMPTKPDEKARELWQQLAAAEAS 319 (329)
T ss_dssp --SCBCCEEEEEEECCCSSCCHHHHHHHHHHHHHTTT
T ss_pred --CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhccC
Confidence 3689999999999999999999999999998 443
No 4
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=4e-48 Score=346.92 Aligned_cols=177 Identities=21% Similarity=0.419 Sum_probs=163.5
Q ss_pred CCCcEEEEEEeehhhhhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCc
Q 017928 58 KGEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGG 137 (363)
Q Consensus 58 ~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G 137 (363)
+++|++++|+|||+|||+|+++++.+.+.+.|..
T Consensus 2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~---------------------------------------------- 35 (180)
T 2q2g_A 2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH---------------------------------------------- 35 (180)
T ss_dssp --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT----------------------------------------------
T ss_pred CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC----------------------------------------------
Confidence 4789999999999999999999999999887741
Q ss_pred ccEEeceeeeecCCCcEEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEE
Q 017928 138 EGEVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTIS 217 (363)
Q Consensus 138 ~G~vi~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~ 217 (363)
|++++.++++|+||||+++|++|+|+|+|+++..++++|||||+|++++|+.|+|+|+|||++++
T Consensus 36 ---------------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~ 100 (180)
T 2q2g_A 36 ---------------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVT 100 (180)
T ss_dssp ---------------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEE
T ss_pred ---------------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEE
Confidence 33456789999999999999999999999996568899999999999999999999999999999
Q ss_pred eceEEeecCcEEEEeccCce-EEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHHHHH
Q 017928 218 ISYLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLEELA 295 (363)
Q Consensus 218 I~l~eAllG~~~~v~tldG~-~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~~l~ 295 (363)
|+|+|||||++++|+||||+ +.|++|++||||++++|+|+|||..+.++.+|||||+|+|++|++||++|+++|++|+
T Consensus 101 Isl~eAllG~~i~v~tldG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~~~ 179 (180)
T 2q2g_A 101 IPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL 179 (180)
T ss_dssp EEHHHHHHCEEEEEECTTCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHHHHHHC
T ss_pred cCHHHHhCCCEEEeeCCCCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhc
Confidence 99999999999999999996 8899999999999999999999987665678999999999999999999999999986
No 5
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=100.00 E-value=1.6e-45 Score=327.24 Aligned_cols=169 Identities=22% Similarity=0.449 Sum_probs=155.1
Q ss_pred CcEEEEEEeehhhhhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCccc
Q 017928 60 EDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEG 139 (363)
Q Consensus 60 ~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G 139 (363)
+|++++|+|||+|||+|+++++++.+.. +
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~----~----------------------------------------------- 29 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG----P----------------------------------------------- 29 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEE----T-----------------------------------------------
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEec----C-----------------------------------------------
Confidence 4899999999999999999999998641 0
Q ss_pred EEeceeeeecCCCcEEeeceEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcceeEEEEec
Q 017928 140 EVISEYCRKCSGEGRIRLKKNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDLFSTISIS 219 (363)
Q Consensus 140 ~vi~~~C~~C~G~G~v~~~~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL~~~~~I~ 219 (363)
.|.+ +.++++|+||||+++|++|+|+|+|+++..++++|||||+|++++|+.|+|+|+|||++++|+
T Consensus 30 ------------~G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Is 96 (170)
T 1c3g_A 30 ------------HGAS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLS 96 (170)
T ss_dssp ------------TTEE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCB
T ss_pred ------------CCcE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcC
Confidence 1223 468999999999999999999999998777899999999999999999999999999999999
Q ss_pred eEEeecCcEEEEeccCce-EEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcCCCCCHHHHHHHH
Q 017928 220 YLDAIMGTVVKVKTVEGI-SELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIPNRISAKERELLE 292 (363)
Q Consensus 220 l~eAllG~~~~v~tldG~-~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P~~l~~~q~~ll~ 292 (363)
|++||||++++|+||||+ +.|++|++||||++++|+|+|||..++++.+|||||+|+|++|++||++|+++|+
T Consensus 97 l~eAllG~~~~v~tldG~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~ 170 (170)
T 1c3g_A 97 FKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID 170 (170)
T ss_dssp HHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHHTC
T ss_pred HHHHhCCCeEEeeCCCCCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHhhC
Confidence 999999999999999996 8999999999999999999999987665578999999999999999999999874
No 6
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.95 E-value=9.6e-29 Score=203.73 Aligned_cols=96 Identities=29% Similarity=0.440 Sum_probs=90.5
Q ss_pred EeccccccCCcceeEEEEeceEEeecCcEEEEeccCceEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEc
Q 017928 200 EEIPGIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTI 279 (363)
Q Consensus 200 ~~h~~f~R~G~DL~~~~~I~l~eAllG~~~~v~tldG~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~ 279 (363)
++|+.|+|+|+||+++++|+|.||++|++++|+|+||.+.|+||+|++||++++|+|+|||. ++ .+|||||+|+|++
T Consensus 2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~~~v~ip~g~~~G~~~rl~G~G~p~-~~--~~GDL~v~~~V~~ 78 (109)
T 3i38_A 2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVS-KT--HTGDLFAVIKIVM 78 (109)
T ss_dssp --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBC-SS--CBCCEEEEEEECC
T ss_pred CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCCEEEeeCCCcCcCeEEEECCccCCC-CC--CCcCEEEEEEEEC
Confidence 68999999999999999999999999999999999999999999999999999999999997 32 6999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhc
Q 017928 280 PNRISAKERELLEELASLR 298 (363)
Q Consensus 280 P~~l~~~q~~ll~~l~~~~ 298 (363)
|++|+++|+++|++|+++.
T Consensus 79 P~~Ls~~q~~~l~~l~~~~ 97 (109)
T 3i38_A 79 PTKPDEKARELWQQLAAAE 97 (109)
T ss_dssp CSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999874
No 7
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2e-26 Score=193.28 Aligned_cols=94 Identities=29% Similarity=0.420 Sum_probs=84.5
Q ss_pred ccccCCcceeEEEEeceEEeecCcEEEEeccCce-EEEecCCC--CCCCcEEEEccCCCCCCCCCCCCccEEEEEEEEcC
Q 017928 204 GIQRDGIDLFSTISISYLDAIMGTVVKVKTVEGI-SELQVPPG--TQPGDVLVLAKKGAPKLNKPSIRGDHLFTVKVTIP 280 (363)
Q Consensus 204 ~f~R~G~DL~~~~~I~l~eAllG~~~~v~tldG~-~~l~ip~g--tq~g~~~~l~g~G~P~~~~~~~rGDL~V~~~V~~P 280 (363)
.|+|+|+|||++++|+|.+||||++++|+||||+ +.|+||+| +|||++++|+|+|||..+++ .+|||||+|+|++|
T Consensus 1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~-~~GDL~V~~~V~~P 79 (121)
T 1xao_A 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKFP 79 (121)
T ss_dssp CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC-------CCCEEEEEEEECC
T ss_pred CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEECC
Confidence 4999999999999999999999999999999997 89999999 99999999999999987665 68999999999999
Q ss_pred CC--CCHHHHHHHHHHHhhc
Q 017928 281 NR--ISAKERELLEELASLR 298 (363)
Q Consensus 281 ~~--l~~~q~~ll~~l~~~~ 298 (363)
+. |+++|+++|++|+...
T Consensus 80 ~~~~ls~~q~~~l~~l~~~~ 99 (121)
T 1xao_A 80 ENHFTSEENLKKLEEILPPR 99 (121)
T ss_dssp CTTCSCHHHHHHHHHHSCCC
T ss_pred CCCCCCHHHHHHHHHHcccc
Confidence 99 9999999999998643
No 8
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.9e-25 Score=182.53 Aligned_cols=103 Identities=34% Similarity=0.697 Sum_probs=95.7
Q ss_pred CCcEEEEEEeehhhhhcCCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcc
Q 017928 59 GEDLRYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGE 138 (363)
Q Consensus 59 g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~ 138 (363)
|.|++++|+|||+|||+|++++|.+++.+.|+.|+|+|+++++.+.+|+.|+|+|++.+.+ |+|+++++|+.|+|+
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~ 76 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT----GPFVMRSTCRRCGGR 76 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE----TTEEEEEECSSSSSS
T ss_pred CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe----CCEEEEEECCcCCCc
Confidence 4678899999999999999999999999999999999999999899999999999886654 678888999999999
Q ss_pred cEEeceeeeecCCCcEEeeceEEEEEe
Q 017928 139 GEVISEYCRKCSGEGRIRLKKNIKVKV 165 (363)
Q Consensus 139 G~vi~~~C~~C~G~G~v~~~~~l~V~I 165 (363)
|++|+++|+.|+|.|+++++++|+|+|
T Consensus 77 G~~i~~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 77 GSIIISPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp SEECSSCCSSSSSCSEECCCCSSCCSC
T ss_pred ceECCCcCCCCCCeeEEEEEEEEEEEc
Confidence 999999999999999999999988875
No 9
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.64 E-value=1e-16 Score=123.95 Aligned_cols=78 Identities=44% Similarity=0.981 Sum_probs=70.3
Q ss_pred CCeEEEEEeeeEeccCCCCCceeeCceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEeceeeeecCCCcEE
Q 017928 76 GAEKEFELSHLETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEGRI 155 (363)
Q Consensus 76 G~~~~i~~~~~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G~v 155 (363)
|++++|.|++.+.|+.|+|+|.+++....+|+.|+|+|+++..+ |+|++..+|+.|+|.|+++.++|+.|+|.|++
T Consensus 1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~ 76 (79)
T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV 76 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCEEeeECcCCCCccEECCCcCCCCCCeEEE
Confidence 56678889999999999999999888888999999999987644 78888899999999999999999999999998
Q ss_pred ee
Q 017928 156 RL 157 (363)
Q Consensus 156 ~~ 157 (363)
++
T Consensus 77 ~~ 78 (79)
T 1exk_A 77 ER 78 (79)
T ss_dssp EC
T ss_pred ee
Confidence 64
No 10
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.42 E-value=3.4e-13 Score=125.97 Aligned_cols=131 Identities=21% Similarity=0.411 Sum_probs=86.9
Q ss_pred hhhhhcCCeEEEEEeeeEeccCCCCCceeeC---------ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccE
Q 017928 70 FSESIFGAEKEFELSHLETCEVCTGTGAKMG---------SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGE 140 (363)
Q Consensus 70 lee~~~G~~~~i~~~~~~~C~~C~GsG~~~g---------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~ 140 (363)
+.+.+.|.-.+- .....|+.|+|+|.... ....+|+.|+|+|.++.. ..+|+.|+|.|.
T Consensus 40 ~C~~C~G~G~~~--g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~----------~~~C~~C~G~g~ 107 (248)
T 1nlt_A 40 LCKECEGRGGKK--GAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDP----------KDRCKSCNGKKV 107 (248)
T ss_dssp ECTTTTTCSBST--TTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCT----------TSBCSSSTTSCE
T ss_pred eCCCCcCccCCC--CCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEecc----------CCCCcccCCCce
Confidence 445555544221 11378999999997531 246789999999987621 179999999998
Q ss_pred Eecee--------------eeecCCCcE-------------Ee------------------------------------e
Q 017928 141 VISEY--------------CRKCSGEGR-------------IR------------------------------------L 157 (363)
Q Consensus 141 vi~~~--------------C~~C~G~G~-------------v~------------------------------------~ 157 (363)
+.... -....|+|. ++ .
T Consensus 108 ~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tld 187 (248)
T 1nlt_A 108 ENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVS 187 (248)
T ss_dssp EEEEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEECSS
T ss_pred EeeeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeCCC
Confidence 76432 223344431 00 0
Q ss_pred ceEEEEEeCCC--CCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccc--cccCCcce
Q 017928 158 KKNIKVKVPPG--VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPG--IQRDGIDL 212 (363)
Q Consensus 158 ~~~l~V~IP~G--v~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~--f~R~G~DL 212 (363)
.+.++|+|||| +++|++++|+|+|++...+...|||||+|+|..+.. ++.+..+|
T Consensus 188 G~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~~ 246 (248)
T 1nlt_A 188 GDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKK 246 (248)
T ss_dssp SCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC-----------
T ss_pred CCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHHh
Confidence 15799999999 999999999999998654435799999999998876 65544433
No 11
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.12 E-value=4.3e-11 Score=98.09 Aligned_cols=51 Identities=27% Similarity=0.489 Sum_probs=42.5
Q ss_pred EEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccccccCCcce
Q 017928 160 NIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPGIQRDGIDL 212 (363)
Q Consensus 160 ~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~f~R~G~DL 212 (363)
.++|+||+|+++|++++|+|+|++.. + .+|||||+|+|..+..+..+..++
T Consensus 39 ~~~v~ip~g~~~G~~~rl~G~G~p~~-~-~~GDL~v~~~V~~P~~Ls~~q~~~ 89 (109)
T 3i38_A 39 SILLTVPPGSQAGQRLRIKGKGLVSK-T-HTGDLFAVIKIVMPTKPDEKAREL 89 (109)
T ss_dssp CEEEEECTTCCTTCEEEETTCSCBCS-S-CBCCEEEEEEECCCSSCCHHHHHH
T ss_pred CEEEeeCCCcCcCeEEEECCccCCCC-C-CCcCEEEEEEEECCCCCCHHHHHH
Confidence 36899999999999999999999863 3 789999999999887665544433
No 12
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.09 E-value=1.1e-10 Score=97.46 Aligned_cols=57 Identities=19% Similarity=0.349 Sum_probs=43.2
Q ss_pred eEEEEEeCCC--CCCCcEEEEccCcCCCCCCCCCccEEEEEEEEeccc--cccCCcceeEE
Q 017928 159 KNIKVKVPPG--VSTGSILRVVGEGDAGPRGGPPGDLYVYLDVEEIPG--IQRDGIDLFST 215 (363)
Q Consensus 159 ~~l~V~IP~G--v~~G~~irl~G~G~~~~~g~~~GDL~V~i~v~~h~~--f~R~G~DL~~~ 215 (363)
+.++|+|||| +++|++++|+|+|++...+...|||||+|+|..+.. +..+..+++..
T Consensus 34 ~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~~~l~~ 94 (121)
T 1xao_A 34 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENLKKLEE 94 (121)
T ss_dssp CEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHHHHHHH
T ss_pred CEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHH
Confidence 4678999999 999999999999998654446799999999998876 66655555443
No 13
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=98.79 E-value=6.5e-09 Score=92.35 Aligned_cols=50 Identities=20% Similarity=0.221 Sum_probs=41.9
Q ss_pred EEEEEeCCCCCCCcEEEEccCcCCCCCC-CCCccEEEEEEEEeccccccCC
Q 017928 160 NIKVKVPPGVSTGSILRVVGEGDAGPRG-GPPGDLYVYLDVEEIPGIQRDG 209 (363)
Q Consensus 160 ~l~V~IP~Gv~~G~~irl~G~G~~~~~g-~~~GDL~V~i~v~~h~~f~R~G 209 (363)
.++|+||+|+++|++++|+|+|++...+ +..|||||+|+|..+..++.+.
T Consensus 121 ~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q 171 (180)
T 2q2g_A 121 NLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQ 171 (180)
T ss_dssp EEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHH
T ss_pred EEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHH
Confidence 5789999999999999999999986533 4679999999999887665443
No 14
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=98.79 E-value=6.4e-09 Score=92.50 Aligned_cols=51 Identities=25% Similarity=0.262 Sum_probs=42.5
Q ss_pred EEEEEeCCCCCCCcEEEEccCcCCCCC-CCCCccEEEEEEEEeccccccCCc
Q 017928 160 NIKVKVPPGVSTGSILRVVGEGDAGPR-GGPPGDLYVYLDVEEIPGIQRDGI 210 (363)
Q Consensus 160 ~l~V~IP~Gv~~G~~irl~G~G~~~~~-g~~~GDL~V~i~v~~h~~f~R~G~ 210 (363)
.++|+||+|+++|++++|+|+|++... .+..|||||+|+|..+..++.+..
T Consensus 121 ~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~ 172 (181)
T 3agx_A 121 TIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSR 172 (181)
T ss_dssp EEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHH
T ss_pred EEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHH
Confidence 578999999999999999999998654 356799999999998876654433
No 15
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=98.73 E-value=6.7e-09 Score=91.45 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=41.8
Q ss_pred EEEEEeCCCCCCCcEEEEccCcCCCCCC-CCCccEEEEEEEEeccccccCC
Q 017928 160 NIKVKVPPGVSTGSILRVVGEGDAGPRG-GPPGDLYVYLDVEEIPGIQRDG 209 (363)
Q Consensus 160 ~l~V~IP~Gv~~G~~irl~G~G~~~~~g-~~~GDL~V~i~v~~h~~f~R~G 209 (363)
.++|+||+|+++|++++|+|+|++...+ +..|||||+|+|..+..++.+.
T Consensus 115 ~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q 165 (170)
T 1c3g_A 115 TLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQ 165 (170)
T ss_dssp EEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTH
T ss_pred EEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHH
Confidence 5789999999999999999999986533 3579999999999887665443
No 16
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.56 E-value=5.8e-08 Score=94.02 Aligned_cols=75 Identities=16% Similarity=0.247 Sum_probs=55.8
Q ss_pred cCCcceeEEEEeceEEeecCcEEEEecc------C--------ceEEEecCCCCCCCcEEEEccCCCCCCCCCCCCccEE
Q 017928 207 RDGIDLFSTISISYLDAIMGTVVKVKTV------E--------GISELQVPPGTQPGDVLVLAKKGAPKLNKPSIRGDHL 272 (363)
Q Consensus 207 R~G~DL~~~~~I~l~eAllG~~~~v~tl------d--------G~~~l~ip~gtq~g~~~~l~g~G~P~~~~~~~rGDL~ 272 (363)
+.|.||++++.|+|.||+.|.+.+|..- . ..++|+||||+++|++|+|+|+|.|..+. +.+||||
T Consensus 138 ~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~g-g~~GDL~ 216 (329)
T 3lz8_A 138 ARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENG-GPNGDLW 216 (329)
T ss_dssp CCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC----CCCCCEE
T ss_pred CCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCC-CCCCcEE
Confidence 4577888888888888888776655322 1 23579999999999999999999996543 3579999
Q ss_pred EEEEEEcCCC
Q 017928 273 FTVKVTIPNR 282 (363)
Q Consensus 273 V~~~V~~P~~ 282 (363)
|+|+|.-...
T Consensus 217 v~I~v~~h~~ 226 (329)
T 3lz8_A 217 LVIHIAPHPL 226 (329)
T ss_dssp EEECCCCCSS
T ss_pred EEEEEecCCc
Confidence 9988765543
No 17
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=98.16 E-value=1.6e-08 Score=105.69 Aligned_cols=78 Identities=19% Similarity=0.350 Sum_probs=60.5
Q ss_pred EEEEEeehhhhhcCCeEEEEEeeeEeccCCCCCceeeCc---eeeeCCCCccccEEEE--------eeeCCCcce-eeee
Q 017928 63 RYDIVLEFSESIFGAEKEFELSHLETCEVCTGTGAKMGS---KMRICSTCGGRGQVMR--------TDQTPFGLF-SQVS 130 (363)
Q Consensus 63 ~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~GsG~~~g~---~~~~C~~C~G~G~~~~--------~~~~~~G~~-~~~~ 130 (363)
.++++|+|+|+++|.+++++|.+.+.|..|+|+|+++++ .+.+|+.|+|+..... ++.+=.|.| +...
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~ 247 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS 247 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence 478899999999999999999999999999999999997 7889999999942110 111112333 3346
Q ss_pred cCCCCCcccE
Q 017928 131 VCPSCGGEGE 140 (363)
Q Consensus 131 ~C~~C~G~G~ 140 (363)
.|..|+..+.
T Consensus 248 ~C~~CH~~~~ 257 (669)
T 3pmq_A 248 NCQTCHADNP 257 (669)
T ss_dssp CCTTTSCCCT
T ss_pred cchhhcCCcc
Confidence 8999998775
No 18
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.96 E-value=1.9e-06 Score=61.14 Aligned_cols=30 Identities=40% Similarity=0.858 Sum_probs=26.9
Q ss_pred eecCCCCCcccEEeceeeeecCCCcEEeec
Q 017928 129 VSVCPSCGGEGEVISEYCRKCSGEGRIRLK 158 (363)
Q Consensus 129 ~~~C~~C~G~G~vi~~~C~~C~G~G~v~~~ 158 (363)
+++|+.|+|+|++|.++|+.|+|.|.++..
T Consensus 9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 9 ETTCPNCNGSGREEPEPCPKCLGKGVILTA 38 (53)
T ss_dssp EEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred eccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence 479999999999999999999999988754
No 19
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=7.2e-06 Score=66.05 Aligned_cols=47 Identities=34% Similarity=0.887 Sum_probs=38.2
Q ss_pred eEeccCCCCCceee---C--ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEece
Q 017928 86 LETCEVCTGTGAKM---G--SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVISE 144 (363)
Q Consensus 86 ~~~C~~C~GsG~~~---g--~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~~ 144 (363)
...|+.|+|+|... + ....+|+.|+|+|.++. .+|+.|+|.|.+...
T Consensus 45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~~~ 96 (104)
T 2ctt_A 45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII------------SPCVVCRGAGQAKQK 96 (104)
T ss_dssp CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS------------SCCSSSSSCSEECCC
T ss_pred CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC------------CcCCCCCCeeEEEEE
Confidence 46899999999763 2 24578999999998764 789999999998654
No 20
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.86 E-value=6.9e-06 Score=62.61 Aligned_cols=46 Identities=33% Similarity=0.826 Sum_probs=36.3
Q ss_pred eeEeccCCCCCceeeC-----ceeeeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEe
Q 017928 85 HLETCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVI 142 (363)
Q Consensus 85 ~~~~C~~C~GsG~~~g-----~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi 142 (363)
....|+.|+|+|.... ....+|+.|+|+|.++. .+|+.|+|.|.+.
T Consensus 27 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~G~~~ 77 (79)
T 1exk_A 27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK------------DPCNKCHGHGRVE 77 (79)
T ss_dssp CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS------------SBCGGGTTSSEEE
T ss_pred cCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC------------CcCCCCCCeEEEe
Confidence 3568999999997642 13468999999998753 6899999999875
No 21
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.85 E-value=2.1e-06 Score=60.91 Aligned_cols=39 Identities=23% Similarity=0.618 Sum_probs=29.7
Q ss_pred eEeccCCCCCceeeCceeeeCCCCccccEEEEee-eCCCccee
Q 017928 86 LETCEVCTGTGAKMGSKMRICSTCGGRGQVMRTD-QTPFGLFS 127 (363)
Q Consensus 86 ~~~C~~C~GsG~~~g~~~~~C~~C~G~G~~~~~~-~~~~G~~~ 127 (363)
...|+.|+|+|.... .+|+.|+|+|.++..+ ++++|+++
T Consensus 9 ~~~C~~C~GsG~~~~---~~C~~C~G~G~v~~~qG~~~~g~~~ 48 (53)
T 2bx9_A 9 EVACPKCERAGEIEG---TPCPACSGKGVILTAQGYTLLDFIQ 48 (53)
T ss_dssp EEECTTTTTSSEETT---EECTTTTTSSEEECHHHHHHHHHHH
T ss_pred cccCCCCcceeccCC---CCCccCCCCccEEEEecccHHHHHH
Confidence 457999999998854 6799999999887766 56666554
No 22
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.31 E-value=0.0001 Score=52.13 Aligned_cols=27 Identities=41% Similarity=0.912 Sum_probs=14.8
Q ss_pred ecCCCCCcccEEeceeeeecCCCcEEe
Q 017928 130 SVCPSCGGEGEVISEYCRKCSGEGRIR 156 (363)
Q Consensus 130 ~~C~~C~G~G~vi~~~C~~C~G~G~v~ 156 (363)
.+|+.|+|.|.++..+|+.|+|.|.+.
T Consensus 10 ~~C~~C~GsG~~~~~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 10 VACPKCERAGEIEGTPCPACSGKGVIL 36 (53)
T ss_dssp EECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred ccCCCCcceeccCCCCCccCCCCccEE
Confidence 455555555555555555555555544
No 23
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.20 E-value=0.00014 Score=51.47 Aligned_cols=26 Identities=35% Similarity=0.888 Sum_probs=13.8
Q ss_pred EeccCCCCCceeeCceeeeCCCCccccEE
Q 017928 87 ETCEVCTGTGAKMGSKMRICSTCGGRGQV 115 (363)
Q Consensus 87 ~~C~~C~GsG~~~g~~~~~C~~C~G~G~~ 115 (363)
.+|+.|+|+|.... ..|+.|+|+|.+
T Consensus 10 ~~C~~C~GsG~~i~---~~C~~C~G~G~v 35 (53)
T 3lcz_A 10 TTCPNCNGSGREEP---EPCPKCLGKGVI 35 (53)
T ss_dssp EECTTTTTSCEETT---EECTTTTTSSEE
T ss_pred ccCcCCcccccCCC---CcCCCCCCcEEE
Confidence 45555555555443 445555555554
No 24
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=93.76 E-value=0.018 Score=45.74 Aligned_cols=36 Identities=33% Similarity=0.617 Sum_probs=11.1
Q ss_pred CcccccccccCCCCCCCCCCC--CCChhhhhhhhhCCCC
Q 017928 1 MYDQYGEAGVKSTVGGGSSAY--TTNPFDLFETFFGPSM 37 (363)
Q Consensus 1 ~YD~~G~~g~~~g~gg~~~g~--~~~~~diF~~fFG~~~ 37 (363)
.||+||++++..++.++ +++ +.++.|+|++||+..|
T Consensus 64 ~YD~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~f~~~f 101 (103)
T 1bq0_A 64 AYDQYGHAAFEQGGMGG-GGFGGGADFSDIFGDVFGDIF 101 (103)
T ss_dssp HTTTSTTTSSCSCC-------------------------
T ss_pred HHHHHhhhhhcccCcCC-CCCCCCCCHHHHHHHHHHhhc
Confidence 49999999987542211 121 1256788888887543
No 25
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=84.86 E-value=2.7 Score=41.30 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=20.5
Q ss_pred cEEEEeccCceEEEecCCCCCCCcEEEEcc
Q 017928 227 TVVKVKTVEGISELQVPPGTQPGDVLVLAK 256 (363)
Q Consensus 227 ~~~~v~tldG~~~l~ip~gtq~g~~~~l~g 256 (363)
+++.||-|+ |.||||++.|.+-.|.|
T Consensus 295 a~i~IPEL~----lei~pg~~~G~~TTVEG 320 (404)
T 2qkd_A 295 CSVEIPELE----FELGMAVLGGKFTTLEG 320 (404)
T ss_dssp CEEEEGGGT----EEECTTTTCSEEEEHHH
T ss_pred eEEEeeeee----EEecCCCCCceEEeHHH
Confidence 567777775 78999998888877766
No 26
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=84.31 E-value=1.4 Score=43.33 Aligned_cols=26 Identities=12% Similarity=0.396 Sum_probs=20.8
Q ss_pred cEEEEeccCceEEEecCCCCCCCcEEEEcc
Q 017928 227 TVVKVKTVEGISELQVPPGTQPGDVLVLAK 256 (363)
Q Consensus 227 ~~~~v~tldG~~~l~ip~gtq~g~~~~l~g 256 (363)
+++.||-|+ |.||||++-|.+-.|.|
T Consensus 87 ati~IPEL~----~eI~pg~~~G~iTTVEG 112 (404)
T 2qkd_A 87 ATTRIPELD----FEIPAFSQKGALTTVEG 112 (404)
T ss_dssp CEEEEGGGT----EEECTTSSCCEEEEHHH
T ss_pred cEEEeeeee----EEecCccCCceEEeHHH
Confidence 567788775 78999998888888766
No 27
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=67.87 E-value=6.3 Score=36.39 Aligned_cols=83 Identities=23% Similarity=0.371 Sum_probs=39.8
Q ss_pred eeCCCCccccEEEEeeeCCCcceeeeecCCCCCcccEEec-eeeeecCCCcEEeeceEEEEEeCCC-CCCCc---EEEEc
Q 017928 104 RICSTCGGRGQVMRTDQTPFGLFSQVSVCPSCGGEGEVIS-EYCRKCSGEGRIRLKKNIKVKVPPG-VSTGS---ILRVV 178 (363)
Q Consensus 104 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~vi~-~~C~~C~G~G~v~~~~~l~V~IP~G-v~~G~---~irl~ 178 (363)
-.|..|+-.. .+.+. .+.+.....|+.|..+|..+. +.|. .....+|+|+=+|. +..|+ .+.+.
T Consensus 135 f~C~~C~~~~---~v~~~-~~~~~~P~~Cp~C~~~~f~l~~~~s~-------f~D~Q~ikiQE~pe~vp~G~~Prsi~V~ 203 (279)
T 1ltl_A 135 FECRGCMRHH---AVTQS-TNMITEPSLCSECGGRSFRLLQDESE-------FLDTQTLKLQEPLENLSGGEQPRQITVV 203 (279)
T ss_dssp EEETTTCCEE---EEECS-SSSCCCCSCCTTTCCCCEEECGGGCE-------EEEEEEEEEECCSTTCCSSCCCCEEEEE
T ss_pred EEcCCCCCEE---EEEec-CCcccCCCcCCCCCCCCcEEeccccE-------EEeeEEEEEecCcccCCCCCCCeEEEEE
Confidence 4688886432 22222 344544577888888874433 2232 23345566553332 33333 12222
Q ss_pred cCcCCCCCCCCCccEEEEEE
Q 017928 179 GEGDAGPRGGPPGDLYVYLD 198 (363)
Q Consensus 179 G~G~~~~~g~~~GDL~V~i~ 198 (363)
=.++- .+...|||-+...=
T Consensus 204 l~~dL-vd~~~PGDrV~vtG 222 (279)
T 1ltl_A 204 LEDDL-VDTLTPGDIVRVTG 222 (279)
T ss_dssp EEGGG-TTCCCTTCEEEEEE
T ss_pred Ecccc-cCccCCCCEEEEEE
Confidence 22322 23456788766443
No 28
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=46.29 E-value=13 Score=28.39 Aligned_cols=25 Identities=12% Similarity=0.331 Sum_probs=22.3
Q ss_pred EEEcCCCCCHHHHHHHHHHHhhcCC
Q 017928 276 KVTIPNRISAKERELLEELASLRNT 300 (363)
Q Consensus 276 ~V~~P~~l~~~q~~ll~~l~~~~~~ 300 (363)
.++||..|++.||.++-++|+-.+=
T Consensus 35 ~l~FP~sLs~~eR~~IH~lA~~~GL 59 (86)
T 1msz_A 35 QLEFPPSLNSHDRLRVHQIAEEHGL 59 (86)
T ss_dssp EEEECTTCCSHHHHHHHHHHHHTTE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHcCC
Confidence 6889999999999999999986653
No 29
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=38.87 E-value=1.1e+02 Score=27.62 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=39.7
Q ss_pred eeC--CCCccccEEEEee--eCCCcceeeeecCCCCCcccE-Ee-ceeeeecCCCcEEeeceEEEEE-----eCCCCCCC
Q 017928 104 RIC--STCGGRGQVMRTD--QTPFGLFSQVSVCPSCGGEGE-VI-SEYCRKCSGEGRIRLKKNIKVK-----VPPGVSTG 172 (363)
Q Consensus 104 ~~C--~~C~G~G~~~~~~--~~~~G~~~~~~~C~~C~G~G~-vi-~~~C~~C~G~G~v~~~~~l~V~-----IP~Gv~~G 172 (363)
-.| ..|+-. +... ....+.+.....|+.|...|. .+ .+.|. .....+|+|+ +|+|--+-
T Consensus 142 f~C~~~~C~~~---~~~~~~~~~~~~~~~P~~Cp~C~~~~~~~l~~~~s~-------f~D~Q~ikiQE~pe~vp~G~~Pr 211 (268)
T 2vl6_A 142 YKHIHPDCMQE---FEWPEDEEMPEVLEMPTICPKCGKPGQFRLIPEKTK-------LIDWQKAVIQERPEEVPSGQLPR 211 (268)
T ss_dssp EEEECTTCCCE---EESSTTSCCCTTCCCCSBCTTTCCBCEEEECGGGCE-------EEEEEEEEEECCGGGSCTTSCCC
T ss_pred EECCCCCCCCE---EeeeecccCCCcccCCccCCCCCCCCCEEEecCccE-------EEeeEEEEEEeCCCCCCCCCCCc
Confidence 468 888632 2222 012344555578999988763 22 22232 2334555553 44453332
Q ss_pred c-EEEEccCcCCCCCCCCCccEEEEE
Q 017928 173 S-ILRVVGEGDAGPRGGPPGDLYVYL 197 (363)
Q Consensus 173 ~-~irl~G~G~~~~~g~~~GDL~V~i 197 (363)
+ .+.+. ++- .+...|||-+...
T Consensus 212 si~v~l~--~dL-vd~~~PGDrV~vt 234 (268)
T 2vl6_A 212 QLEIILE--DDL-VDSARPGDRVKVT 234 (268)
T ss_dssp EEEEEEE--GGG-TTSSCTTCEEEEE
T ss_pred EEEEEEc--cCc-cCcccCCCEEEEE
Confidence 2 23332 322 2345688877644
No 30
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=36.55 E-value=28 Score=31.89 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=34.8
Q ss_pred eeecCCCCCcccEEec--------eeeeecCCCcEEeec-eEEEEEeCCCCCCCcEEEEccCcCCCCCCCCCccEEEE
Q 017928 128 QVSVCPSCGGEGEVIS--------EYCRKCSGEGRIRLK-KNIKVKVPPGVSTGSILRVVGEGDAGPRGGPPGDLYVY 196 (363)
Q Consensus 128 ~~~~C~~C~G~G~vi~--------~~C~~C~G~G~v~~~-~~l~V~IP~Gv~~G~~irl~G~G~~~~~g~~~GDL~V~ 196 (363)
....|..|+-...+.. ..|+.|...+..... +.. ..|=|+|+|.-.-+.-|.|..|--+-|.
T Consensus 133 ~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~~f~l~~~~s~-------f~D~Q~ikiQE~pe~vp~G~~Prsi~V~ 203 (279)
T 1ltl_A 133 AVFECRGCMRHHAVTQSTNMITEPSLCSECGGRSFRLLQDESE-------FLDTQTLKLQEPLENLSGGEQPRQITVV 203 (279)
T ss_dssp EEEEETTTCCEEEEECSSSSCCCCSCCTTTCCCCEEECGGGCE-------EEEEEEEEEECCSTTCCSSCCCCEEEEE
T ss_pred EEEEcCCCCCEEEEEecCCcccCCCcCCCCCCCCcEEeccccE-------EEeeEEEEEecCcccCCCCCCCeEEEEE
Confidence 3478999986654432 359999987632211 111 3355788887654444444444434433
No 31
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=30.15 E-value=3.8 Score=41.47 Aligned_cols=65 Identities=18% Similarity=0.409 Sum_probs=37.2
Q ss_pred eccCCCCCceeeC-----ceeeeCCCCccccEEEEee----eCCCccee--eeecCCCCCcccEEeceeeeecCCC
Q 017928 88 TCEVCTGTGAKMG-----SKMRICSTCGGRGQVMRTD----QTPFGLFS--QVSVCPSCGGEGEVISEYCRKCSGE 152 (363)
Q Consensus 88 ~C~~C~GsG~~~g-----~~~~~C~~C~G~G~~~~~~----~~~~G~~~--~~~~C~~C~G~G~vi~~~C~~C~G~ 152 (363)
.|..||+...... .....|-.||......... ...+-... ....|..|+..=......|..||-.
T Consensus 13 ~C~~CH~~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~h~~H~~~~~~C~~CH~~h~~~~~~C~~CH~~ 88 (571)
T 1y0p_A 13 ECDSCHTPDGELSNDSLTYENTQCVSCHGTLAEVAETTKHEHYNAHASHFPGEVACTSCHSAHEKSMVYCDSCHSF 88 (571)
T ss_dssp CGGGTSCTTCCCCCTTCHHHHHHHHHHHCCHHHHHTTSCCSSCCTTSCSCCSCCCGGGTCCSSSCBCCGGGGTCCC
T ss_pred ChhhcCCCcccccccccccccchhhhhCcChhhcccccccccCCccccccCCCCCccccCccccCCCccccccChh
Confidence 6999999874322 1456799999753211000 00000011 1357999986544445779999875
No 32
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=29.32 E-value=2.1 Score=43.34 Aligned_cols=66 Identities=23% Similarity=0.488 Sum_probs=37.9
Q ss_pred eccCCCCCceeeC----ceeeeCCCCccccEEEEeee---CCCcceeeeecCCCCCcccEEeceeeeecCCCc
Q 017928 88 TCEVCTGTGAKMG----SKMRICSTCGGRGQVMRTDQ---TPFGLFSQVSVCPSCGGEGEVISEYCRKCSGEG 153 (363)
Q Consensus 88 ~C~~C~GsG~~~g----~~~~~C~~C~G~G~~~~~~~---~~~G~~~~~~~C~~C~G~G~vi~~~C~~C~G~G 153 (363)
.|..||+.+.... .....|-.||..-..+.... .+-..-.....|..|+-.-......|..|+...
T Consensus 14 ~C~~CH~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~h~~~~~~~~C~~CH~~h~~~~~~c~~ch~~~ 86 (566)
T 1qo8_A 14 SCQSCHAKPIKVTDSETHENAQCKSCHGEYAELANDKLQFDPHNSHLGDINCTSCHKGHEEPKFYCNECHSFD 86 (566)
T ss_dssp CGGGTSCSSCCCCTTCHHHHHHHHHHHCCHHHHCCSSSSSCTTSSTTCSCCGGGTSCSSSCCCCGGGGTCCCC
T ss_pred ChhhhCCCccccccccCccCCHHhhhCcCHHHHhhccccCCcchhcCCCCCchhhCcCCcCcCchhhhhcCCC
Confidence 6999999865421 13447999997532111000 000000013689999965554557799998754
No 33
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} SCOP: b.29.1.3 PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Probab=27.73 E-value=97 Score=25.05 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=30.8
Q ss_pred EEecCCCCCCCcEEEEccCCCCCCCC--------CCCCccEEEEEEEEcCC
Q 017928 239 ELQVPPGTQPGDVLVLAKKGAPKLNK--------PSIRGDHLFTVKVTIPN 281 (363)
Q Consensus 239 ~l~ip~gtq~g~~~~l~g~G~P~~~~--------~~~rGDL~V~~~V~~P~ 281 (363)
.-.||.|.++|+.++|+|.=.+..++ .....|+-+||++.+.+
T Consensus 9 ~~~i~~gl~~G~~i~I~G~v~~~a~rF~Inl~~g~~~~~dialHfnpRf~~ 59 (138)
T 3zxf_A 9 KSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDT 59 (138)
T ss_dssp EEECTTCCCSSEEEEEEEEECTTCCBEEEEEESSSSTTCCEEEEEEEETTT
T ss_pred EeecCCCCCCCCEEEEEEEECCCCCEEEEEeeeCCCCCCCEEEEEEEEcCC
Confidence 45788899999999999864433221 11246999999999954
No 34
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=25.31 E-value=21 Score=36.03 Aligned_cols=14 Identities=50% Similarity=1.153 Sum_probs=10.2
Q ss_pred ecCCCCCcccEEec
Q 017928 130 SVCPSCGGEGEVIS 143 (363)
Q Consensus 130 ~~C~~C~G~G~vi~ 143 (363)
.+||.|+|+|.+.+
T Consensus 409 ~~Cp~C~G~G~v~s 422 (517)
T 2bx2_L 409 HVCPRCSGTGTVRD 422 (517)
T ss_dssp CCCSSSSSSSCCCC
T ss_pred CcCCCcCCceeECC
Confidence 46888888887653
No 35
>2pn2_A Uncharacterized protein; putative osmotic stress induced and detoxification response structural genomics; 1.95A {Psychrobacter arcticus} SCOP: d.227.1.1
Probab=24.82 E-value=70 Score=26.46 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=23.0
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHh
Q 017928 271 HLFTVKVTIPNRISAKERELLEELAS 296 (363)
Q Consensus 271 L~V~~~V~~P~~l~~~q~~ll~~l~~ 296 (363)
.-|+++|.+|..+++++++.|.+.++
T Consensus 107 ~~i~l~v~l~g~~~~e~~~~l~~~a~ 132 (155)
T 2pn2_A 107 SEVHIAITFNQELDDKTQKIFYNTAL 132 (155)
T ss_dssp EEEEEEEECSSCCCHHHHHHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHhc
Confidence 56888999999999999999998887
No 36
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=24.10 E-value=80 Score=28.51 Aligned_cols=22 Identities=14% Similarity=0.425 Sum_probs=14.5
Q ss_pred ceEEEEEeCC----CCCCCcEEEEcc
Q 017928 158 KKNIKVKVPP----GVSTGSILRVVG 179 (363)
Q Consensus 158 ~~~l~V~IP~----Gv~~G~~irl~G 179 (363)
.++++|.+.. -+.+|+++.+.|
T Consensus 210 Prsi~v~l~~dLvd~~~PGDrV~vtG 235 (268)
T 2vl6_A 210 PRQLEIILEDDLVDSARPGDRVKVTG 235 (268)
T ss_dssp CCEEEEEEEGGGTTSSCTTCEEEEEE
T ss_pred CcEEEEEEccCccCcccCCCEEEEEE
Confidence 3666666654 477788777765
No 37
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=23.37 E-value=28 Score=20.43 Aligned_cols=10 Identities=30% Similarity=0.700 Sum_probs=8.5
Q ss_pred HHHHhhhccc
Q 017928 343 KLKDFAGSVA 352 (363)
Q Consensus 343 ~l~~~~~~~~ 352 (363)
||||||+.++
T Consensus 11 kIkdFf~~l~ 20 (26)
T 2fcg_F 11 RIKDFLRNLV 20 (26)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHhcC
Confidence 8999998764
No 38
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=21.18 E-value=47 Score=23.53 Aligned_cols=7 Identities=57% Similarity=1.730 Sum_probs=3.2
Q ss_pred ecCCCCC
Q 017928 130 SVCPSCG 136 (363)
Q Consensus 130 ~~C~~C~ 136 (363)
..|+.|+
T Consensus 18 ~~CP~CG 24 (60)
T 2aus_D 18 ETCPVCG 24 (60)
T ss_dssp SBCTTTC
T ss_pred ccCcCCC
Confidence 3455444
No 39
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=20.58 E-value=1e+02 Score=20.74 Aligned_cols=34 Identities=24% Similarity=0.510 Sum_probs=18.5
Q ss_pred eeeCCCCccccEEEEeeeCCCc--ceeeeecCCCCC
Q 017928 103 MRICSTCGGRGQVMRTDQTPFG--LFSQVSVCPSCG 136 (363)
Q Consensus 103 ~~~C~~C~G~G~~~~~~~~~~G--~~~~~~~C~~C~ 136 (363)
...|+.|+....+....|+-.. .+...-.|..|+
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg 44 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECG 44 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSC
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCC
Confidence 3468888877766554443211 233335677674
Done!