BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017930
         (363 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 47/63 (74%), Gaps = 1/63 (1%)

Query: 288 DIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHN 347
           D+  D + WRKYGQK +KG+P+PR YYKC++  GC  RKHVERA  DP  +V TYEG+HN
Sbjct: 15  DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATDPKAVVTTYEGKHN 73

Query: 348 HSL 350
           H L
Sbjct: 74  HDL 76


>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 49/65 (75%), Gaps = 1/65 (1%)

Query: 286 LSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGE 345
           L DI  D + WRKYGQK +KGSP+PR YY+CSS  GCP +KHVER+  D  +L+ TYEG+
Sbjct: 10  LFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSP-GCPVKKHVERSSHDTKLLITTYEGK 68

Query: 346 HNHSL 350
           H+H +
Sbjct: 69  HDHDM 73


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.130    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,832,166
Number of Sequences: 62578
Number of extensions: 238880
Number of successful extensions: 438
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 3
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)