Query 017930
Match_columns 363
No_of_seqs 231 out of 726
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 07:12:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 3.3E-33 1.1E-37 222.0 6.1 67 285-352 9-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 8.8E-33 3E-37 220.5 5.0 67 285-352 12-78 (78)
3 2rpr_A Flywch-type zinc finger 54.7 4.3 0.00015 31.5 1.3 48 291-351 25-74 (87)
4 1cz6_A Protein (androctonin); 20.0 23 0.00079 22.4 0.1 7 312-318 16-22 (26)
5 1xiw_B T-cell surface glycopro 19.9 18 0.00063 27.9 -0.5 27 291-317 17-53 (79)
6 2ghj_A 50S ribosomal protein L 17.9 1.5E+02 0.0053 24.9 4.7 47 20-86 59-110 (118)
7 1xiw_A T-cell surface glycopro 16.7 28 0.00095 28.9 -0.1 28 290-317 32-78 (105)
8 2ftc_L MRPL20 protein; mitocho 15.9 1.4E+02 0.0048 25.2 4.0 48 20-87 61-113 (118)
9 2zjr_N 50S ribosomal protein L 12.9 1.3E+02 0.0043 25.4 2.9 48 20-87 61-113 (118)
10 2v9t_A Roundabout homolog 1; s 11.8 69 0.0024 23.9 0.9 25 324-348 91-115 (117)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.97 E-value=3.3e-33 Score=222.04 Aligned_cols=67 Identities=57% Similarity=1.130 Sum_probs=63.5
Q ss_pred cCCCCCCCcccccccCCcccCCCCCCcccccCCCCCCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 017930 285 RLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSV 352 (363)
Q Consensus 285 ~~~di~~Dgy~WRKYGQK~Ikgs~~PR~YYrCs~~~gC~A~K~Vqr~~~Dp~~~~vtY~G~H~h~~~~ 352 (363)
...++++|||.|||||||.|||++|||+||||++ .||+|+|+|||+++|+.+++|||+|+|||+.|.
T Consensus 9 ~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 9 TLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 4578899999999999999999999999999995 799999999999999999999999999999875
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.97 E-value=8.8e-33 Score=220.53 Aligned_cols=67 Identities=57% Similarity=1.083 Sum_probs=63.3
Q ss_pred cCCCCCCCcccccccCCcccCCCCCCcccccCCCCCCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 017930 285 RLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSV 352 (363)
Q Consensus 285 ~~~di~~Dgy~WRKYGQK~Ikgs~~PR~YYrCs~~~gC~A~K~Vqr~~~Dp~~~~vtY~G~H~h~~~~ 352 (363)
...++++|||.|||||||.|||++|||+||||++ +||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 12 s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 12 SEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred CCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 4568899999999999999999999999999995 899999999999999999999999999999874
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=54.73 E-value=4.3 Score=31.47 Aligned_cols=48 Identities=21% Similarity=0.411 Sum_probs=30.1
Q ss_pred CCcccccccCCcccCCCCCCcccccCCC--CCCCccccceeecCCCCCEEEEEeeccCCCCCC
Q 017930 291 PDDFSWRKYGQKPIKGSPHPRGYYKCSS--VRGCPARKHVERALDDPSMLVVTYEGEHNHSLS 351 (363)
Q Consensus 291 ~Dgy~WRKYGQK~Ikgs~~PR~YYrCs~--~~gC~A~K~Vqr~~~Dp~~~~vtY~G~H~h~~~ 351 (363)
.|||...+--+ ...+.|.+|+. ..+|+|+=.... ++ + ...+.|||++.
T Consensus 25 ~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~---~--~~~~~HnH~p~ 74 (87)
T 2rpr_A 25 HESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR---I--MVMRSHCHQPD 74 (87)
T ss_dssp ETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE---E--EECSCCSSCCC
T ss_pred ECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC---E--ECCCCcCCCCc
Confidence 48887765321 12368999995 248999854432 22 2 35688999753
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=20.00 E-value=23 Score=22.37 Aligned_cols=7 Identities=57% Similarity=1.459 Sum_probs=5.9
Q ss_pred ccccCCC
Q 017930 312 GYYKCSS 318 (363)
Q Consensus 312 ~YYrCs~ 318 (363)
.||||++
T Consensus 16 cyykctn 22 (26)
T 1cz6_A 16 CYYKCTN 22 (26)
T ss_dssp CEEEECC
T ss_pred eEEEccC
Confidence 5999995
No 5
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=19.90 E-value=18 Score=27.89 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=18.4
Q ss_pred CCcccccccCCcc--------cC--CCCCCcccccCC
Q 017930 291 PDDFSWRKYGQKP--------IK--GSPHPRGYYKCS 317 (363)
Q Consensus 291 ~Dgy~WRKYGQK~--------Ik--gs~~PR~YYrCs 317 (363)
.+++.|-|-|... +. ...-||+||.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 3568898888642 22 333489999995
No 6
>2ghj_A 50S ribosomal protein L20; folding intermediate, ribosomal protein extension, structural protein; 2.90A {Aquifex aeolicus} PDB: 1gyz_A
Probab=17.86 E-value=1.5e+02 Score=24.88 Aligned_cols=47 Identities=32% Similarity=0.415 Sum_probs=35.5
Q ss_pred hHHHHHHHHh--hhhHHHHHHHHhccchhhhcccCCCCCCCCCCcccccchhHHHHHHHHhh---hhhhhhc
Q 017930 20 EDCAVQEAAS--GLESVEKLINLLSQQQQVQQNNSHQSSPSSRSSMDLENDCKAVADVAVSK---FKRVISL 86 (363)
Q Consensus 20 Ee~AvqEAAs--GleS~e~Li~lLSq~~~~~q~~~~~~~~~~~~~~~~~~d~~~itd~AVsK---FKkVISL 86 (363)
+-.-|-.|++ || |-.+||.-|...+ ++.|-..++|-||.. |+.++.+
T Consensus 59 WI~RINAa~R~~gl-sYS~fi~gL~k~~-------------------I~LNRKvLA~lAi~dp~~F~~lv~~ 110 (118)
T 2ghj_A 59 WIARINAAVRAYGL-NYSTFINGLKKAG-------------------IELDRKILADMAVRDPQAFEQVVNK 110 (118)
T ss_dssp HHHHHHHHHHTTTC-CHHHHHHHHTTTT-------------------CCCCHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHhC-------------------CCccHHHHHHHHHhCHHHHHHHHHH
Confidence 4444556666 77 7888888887644 568999999999998 8877754
No 7
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=16.67 E-value=28 Score=28.91 Aligned_cols=28 Identities=21% Similarity=0.521 Sum_probs=18.8
Q ss_pred CCCcccccccCCcc----------------cCCCCC---CcccccCC
Q 017930 290 PPDDFSWRKYGQKP----------------IKGSPH---PRGYYKCS 317 (363)
Q Consensus 290 ~~Dgy~WRKYGQK~----------------Ikgs~~---PR~YYrCs 317 (363)
+.+...|-|-|+.. +.++-. ||+||.|.
T Consensus 32 ~~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~ 78 (105)
T 1xiw_A 32 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78 (105)
T ss_dssp TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEE
T ss_pred CCCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEc
Confidence 34557888777542 445533 89999995
No 8
>2ftc_L MRPL20 protein; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=15.89 E-value=1.4e+02 Score=25.16 Aligned_cols=48 Identities=31% Similarity=0.358 Sum_probs=35.9
Q ss_pred hHHHHHHHHh--hhhHHHHHHHHhccchhhhcccCCCCCCCCCCcccccchhHHHHHHHHhh---hhhhhhcc
Q 017930 20 EDCAVQEAAS--GLESVEKLINLLSQQQQVQQNNSHQSSPSSRSSMDLENDCKAVADVAVSK---FKRVISLL 87 (363)
Q Consensus 20 Ee~AvqEAAs--GleS~e~Li~lLSq~~~~~q~~~~~~~~~~~~~~~~~~d~~~itd~AVsK---FKkVISLL 87 (363)
+-.-|-.|++ || +-.+||.-|...+ ++.|-..++|-||.. |+.++.+.
T Consensus 61 WI~RINAa~R~~g~-sYs~fi~~L~k~~-------------------I~LNRKvLa~lAi~dp~~F~~lv~~a 113 (118)
T 2ftc_L 61 WINRITAASQEHGL-KYPALIGNLVKCQ-------------------VELNRKVLADLAIYEPKTFKSLAALA 113 (118)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHhC-------------------CCccHHHHHHHHHcCHHHHHHHHHHH
Confidence 4445656666 77 6788888887543 568999999999998 88877654
No 9
>2zjr_N 50S ribosomal protein L20; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.144.2.1 PDB: 1nwx_O* 1nwy_O* 1sm1_O* 1xbp_O* 1yl3_1 2b66_U 2b9n_U 2b9p_U 2zjp_N* 2zjq_N 1nkw_O 3cf5_N* 3dll_N* 3pio_N* 3pip_N* 1pnu_O 1pny_O 1vor_R 1vou_R 1vow_R ...
Probab=12.88 E-value=1.3e+02 Score=25.42 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=35.9
Q ss_pred hHHHHHHHHh--hhhHHHHHHHHhccchhhhcccCCCCCCCCCCcccccchhHHHHHHHHhh---hhhhhhcc
Q 017930 20 EDCAVQEAAS--GLESVEKLINLLSQQQQVQQNNSHQSSPSSRSSMDLENDCKAVADVAVSK---FKRVISLL 87 (363)
Q Consensus 20 Ee~AvqEAAs--GleS~e~Li~lLSq~~~~~q~~~~~~~~~~~~~~~~~~d~~~itd~AVsK---FKkVISLL 87 (363)
+-.-|-.|++ || |-.+||.-|...+ ++.|-..++|-||.. |+.++.+.
T Consensus 61 WI~RINAa~R~~Gl-sYS~fi~gL~k~~-------------------I~LNRKvLA~lAi~dp~~F~~lv~~a 113 (118)
T 2zjr_N 61 WIQRINAGARLHGM-NYSTFINGLKRAN-------------------IDLNRKVLADIAAREPEAFKALVDAS 113 (118)
T ss_dssp HHHHHHHHHTTTTC-CHHHHHHHHHHCT-------------------TCCCCSSHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHhC-------------------CCccHHHHHHHHHcCHHHHHHHHHHH
Confidence 4445656666 77 7888888887544 467889999999997 88887654
No 10
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=11.79 E-value=69 Score=23.89 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=9.9
Q ss_pred cccceeecCCCCCEEEEEeeccCCC
Q 017930 324 ARKHVERALDDPSMLVVTYEGEHNH 348 (363)
Q Consensus 324 A~K~Vqr~~~Dp~~~~vtY~G~H~h 348 (363)
|...+-........+.+.|+.+|.|
T Consensus 91 a~N~~G~~~s~~~~l~~~~~~~~~~ 115 (117)
T 2v9t_A 91 ARNYLGEAVSHDASLEVAAAAHHHH 115 (117)
T ss_dssp EEETTEEEECCCEEEEEC-------
T ss_pred EEeCccceEeeeEEEEhhhhhhhhc
Confidence 4444444444556667766666654
Done!