Query 017931
Match_columns 363
No_of_seqs 112 out of 152
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 07:13:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nvp_C Transcription initiatio 100.0 2.5E-36 8.7E-41 238.9 6.0 70 292-363 7-76 (76)
2 1nh2_C Transcription initiatio 100.0 1.3E-34 4.4E-39 230.5 5.9 71 293-363 5-78 (79)
3 1rm1_C Transcription initiatio 100.0 1.5E-31 5.2E-36 251.5 6.0 70 294-363 213-285 (286)
4 2v8f_C MDIA1, profilin IIA; al 31.6 29 0.001 22.8 2.2 17 68-84 6-22 (26)
5 1s1d_A Apyrase; adpase, five-b 28.1 40 0.0014 32.9 3.5 34 322-355 39-76 (331)
6 1e0n_A Hypothetical protein; Y 26.9 36 0.0012 21.6 2.0 20 344-363 5-24 (27)
7 2dk1_A WW domain-binding prote 24.9 34 0.0012 24.6 1.8 27 332-363 5-31 (50)
8 2k7i_A UPF0339 protein ATU0232 23.1 37 0.0013 27.0 1.9 21 322-343 22-42 (83)
9 1e0l_A Formin binding protein; 20.5 40 0.0014 22.3 1.4 25 334-363 6-30 (37)
10 2jxw_A WW domain-binding prote 20.0 83 0.0029 23.3 3.2 27 332-363 3-29 (75)
11 2ysi_A Transcription elongatio 20.0 42 0.0014 22.8 1.4 27 332-363 8-34 (40)
No 1
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=100.00 E-value=2.5e-36 Score=238.85 Aligned_cols=70 Identities=40% Similarity=0.773 Sum_probs=46.8
Q ss_pred CCCCCCCCCCCCCCCCcccccccCCCCCCEEEEEEeeeeccCCceeEEeecceeEECCeeeeeecccccccC
Q 017931 292 EDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 363 (363)
Q Consensus 292 de~eEdpLNSdDDdd~dD~Dd~Ed~~t~NvvLCqYDKV~R~KNKWKc~LKDGIm~INGKDyvF~KatGEfEw 363 (363)
++++||+|||+||+++++. .++++++||||||||||+|+||||||+|||||||||||||||+||+|||||
T Consensus 7 ~~~~ed~lnsd~Dd~dd~~--~~~~~~~n~vlC~ydKV~R~KnkWKc~LKdGim~ingkdy~F~ka~GE~eW 76 (76)
T 1nvp_C 7 GQVEEEPLNSEDDVSDEEG--QELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 76 (76)
T ss_dssp -------------------------CCCCEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred ccccccccCCcCCCccccc--ccccCCCcEEEEEEEEEeccCceEEEEEeccEEEECCEEEEEeccceeecC
Confidence 4578999999998765544 357799999999999999999999999999999999999999999999999
No 2
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=100.00 E-value=1.3e-34 Score=230.55 Aligned_cols=71 Identities=42% Similarity=0.670 Sum_probs=45.8
Q ss_pred CCCCCCCCCCCCCCCccc---ccccCCCCCCEEEEEEeeeeccCCceeEEeecceeEECCeeeeeecccccccC
Q 017931 293 DDDDEPLNENDDDELDDV---DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 363 (363)
Q Consensus 293 e~eEdpLNSdDDdd~dD~---Dd~Ed~~t~NvvLCqYDKV~R~KNKWKc~LKDGIm~INGKDyvF~KatGEfEw 363 (363)
+.++|+||||+|++++|. +++++.++.|+||||||||+|+||||||+|||||||||||||||+||+|||||
T Consensus 5 ~~d~d~insdlDd~dd~~~~~~~~~d~~~~n~vlC~ydKV~R~KnKWKc~LKdGi~~ingkDy~F~ka~GE~eW 78 (79)
T 1nh2_C 5 LLDTDEVGSELDDSDDDYLISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEW 78 (79)
T ss_dssp ----------------CCBC---------CCEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred ccccccccCccCCccccccccccccccccCcEEEEEEEEEeeecceEEEEEeeeEEEECCEEEEEecccEEEEE
Confidence 357889999987665554 33345689999999999999999999999999999999999999999999999
No 3
>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-31 Score=251.53 Aligned_cols=70 Identities=43% Similarity=0.698 Sum_probs=49.3
Q ss_pred CCCCCCCCCCCCCCccc---ccccCCCCCCEEEEEEeeeeccCCceeEEeecceeEECCeeeeeecccccccC
Q 017931 294 DDDEPLNENDDDELDDV---DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 363 (363)
Q Consensus 294 ~eEdpLNSdDDdd~dD~---Dd~Ed~~t~NvvLCqYDKV~R~KNKWKc~LKDGIm~INGKDyvF~KatGEfEw 363 (363)
.++|++|||+||+++|. +++++..+.|+||||||||+|+||||||+|||||||||||||||+||+|||||
T Consensus 213 ~d~d~insdlDd~dd~~~~~~~~~~~~~~n~vlc~ydKV~R~knkWKc~lKdGi~~ingkdy~F~ka~GE~ew 285 (286)
T 1rm1_C 213 LDTDEVGSELDDSDDDYLISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEW 285 (286)
T ss_dssp ---------------CCBCCC---CSTTSCEEEEEEEEEEEETTEEEEEEEEEEEECSSCEEEEEEEEEEEEC
T ss_pred cccccccCccCCcccccccccccccccccceEEEEEeeeeecccceeEEeeeeeEEECCceeeeeeccEEEee
Confidence 47788999986665543 34456689999999999999999999999999999999999999999999999
No 4
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=31.64 E-value=29 Score=22.79 Aligned_cols=17 Identities=53% Similarity=1.122 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCCCCCC
Q 017931 68 PLPGSTPLPGSTPLPGT 84 (363)
Q Consensus 68 ~~~~~~~~~~~~~~~g~ 84 (363)
||||...+|-..||||.
T Consensus 6 plPg~~giPpPpplPg~ 22 (26)
T 2v8f_C 6 PLPGVASIPPPPPLPGX 22 (26)
T ss_pred CCCCCCCCCCCCCCCCc
Confidence 45565556666677773
No 5
>1s1d_A Apyrase; adpase, five-blade beta propeller, calcium-binding protein, nucleotide-binding motif, hydrolase; HET: GP2; 1.60A {Homo sapiens} SCOP: b.67.3.1 PDB: 1s18_A* 2h2n_A 2h2u_A
Probab=28.14 E-value=40 Score=32.88 Aligned_cols=34 Identities=24% Similarity=0.563 Sum_probs=24.8
Q ss_pred EEEEEeeeecc--CCceeEEeecceeEECCe--eeeee
Q 017931 322 VLAQFDKVTRT--KSRWKCALKDGIMHINNK--DILFN 355 (363)
Q Consensus 322 vLCqYDKV~R~--KNKWKc~LKDGIm~INGK--DyvF~ 355 (363)
|+.=-||-.|. +++|+++||-|.+..+++ .|-|.
T Consensus 39 iIaDLD~~Sk~~~~~~w~S~~~~G~L~~~~~~~~~si~ 76 (331)
T 1s1d_A 39 VIADLDTESRAQEENTWFSYLKKGYLTLSDSGDKVAVE 76 (331)
T ss_dssp EEEECGGGGBCSSTTCEEEEEEEEEEEEETTSSCEEEE
T ss_pred EEecCchhccccCCCcEEEEEEEEEEEECCCCCeEEEE
Confidence 55566777775 788999999999998763 45443
No 6
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=26.95 E-value=36 Score=21.63 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=16.9
Q ss_pred eeEECCeeeeeecccccccC
Q 017931 344 IMHINNKDILFNKATGEFDF 363 (363)
Q Consensus 344 Im~INGKDyvF~KatGEfEw 363 (363)
+-+-.||-|.|+..|++-.|
T Consensus 5 ~~~~~g~~YYyN~~T~~s~W 24 (27)
T 1e0n_A 5 IIHENGRPLYYNAEQKTKLH 24 (27)
T ss_dssp EEESSSSEEEEETTTTEEES
T ss_pred EECCCCCeEEEECCCCCEec
Confidence 45668999999999999776
No 7
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=24.95 E-value=34 Score=24.62 Aligned_cols=27 Identities=11% Similarity=0.411 Sum_probs=21.5
Q ss_pred cCCceeEEeecceeEECCeeeeeecccccccC
Q 017931 332 TKSRWKCALKDGIMHINNKDILFNKATGEFDF 363 (363)
Q Consensus 332 ~KNKWKc~LKDGIm~INGKDyvF~KatGEfEw 363 (363)
.++.|+...-. +|+.|.|+..|+|..|
T Consensus 5 ~~~~W~e~~s~-----~G~~YYyN~~T~eS~W 31 (50)
T 2dk1_A 5 SSGRWVEGITS-----EGYHYYYDLISGASQW 31 (50)
T ss_dssp CSCCEEECCCS-----TTCCCEEESSSCCEES
T ss_pred CCCCeEEEECC-----CCCEEEEECCCCCEEe
Confidence 45678876433 7999999999999877
No 8
>2k7i_A UPF0339 protein ATU0232; protein of unknown function, swapped dimer. PSI2, structural genomics, unknown function; NMR {Agrobacterium tumefaciens str} SCOP: d.348.1.1
Probab=23.10 E-value=37 Score=27.01 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=17.7
Q ss_pred EEEEEeeeeccCCceeEEeecc
Q 017931 322 VLAQFDKVTRTKSRWKCALKDG 343 (363)
Q Consensus 322 vLCqYDKV~R~KNKWKc~LKDG 343 (363)
|.. |+.-....++|+|.||.+
T Consensus 22 Mag-FEi~k~~~Gq~rFrLkA~ 42 (83)
T 2k7i_A 22 MYK-FEIYQDKAGEYRFRFKAS 42 (83)
T ss_dssp CCE-EEEEECTTSCEEEEECCT
T ss_pred ccc-EEEEEcCCCCEEEEEEEC
Confidence 445 999999999999999975
No 9
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=20.53 E-value=40 Score=22.32 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=19.5
Q ss_pred CceeEEeecceeEECCeeeeeecccccccC
Q 017931 334 SRWKCALKDGIMHINNKDILFNKATGEFDF 363 (363)
Q Consensus 334 NKWKc~LKDGIm~INGKDyvF~KatGEfEw 363 (363)
..|+...- -+|+-|-|+..|+|..|
T Consensus 6 ~~W~e~~~-----~~G~~YYyN~~T~es~W 30 (37)
T 1e0l_A 6 SEWTEYKT-----ADGKTYYYNNRTLESTW 30 (37)
T ss_dssp CSCEEEEC-----TTSCEEEEETTTTEEES
T ss_pred CCeEEEEC-----CCCCEEEEECCCCCEEe
Confidence 45776643 36999999999999877
No 10
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=20.01 E-value=83 Score=23.30 Aligned_cols=27 Identities=15% Similarity=0.449 Sum_probs=20.7
Q ss_pred cCCceeEEeecceeEECCeeeeeecccccccC
Q 017931 332 TKSRWKCALKDGIMHINNKDILFNKATGEFDF 363 (363)
Q Consensus 332 ~KNKWKc~LKDGIm~INGKDyvF~KatGEfEw 363 (363)
+++.|.-.... +|+-|.|+..+|+.-|
T Consensus 3 ~~~~W~e~~~~-----~G~~YYyN~~T~~s~W 29 (75)
T 2jxw_A 3 SKGRWVEGITS-----EGYHYYYDLISGASQW 29 (75)
T ss_dssp CCCCEEEEEET-----TTEEEEEETTTTEEEC
T ss_pred CCCCcEEEECC-----CCCEEEEECCCCCEee
Confidence 45677755433 7999999999998766
No 11
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=20.01 E-value=42 Score=22.79 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=21.1
Q ss_pred cCCceeEEeecceeEECCeeeeeecccccccC
Q 017931 332 TKSRWKCALKDGIMHINNKDILFNKATGEFDF 363 (363)
Q Consensus 332 ~KNKWKc~LKDGIm~INGKDyvF~KatGEfEw 363 (363)
....|+... .-+|+-|-|+..|+|..|
T Consensus 8 ~~~~W~e~~-----~~~G~~YYyN~~T~eS~W 34 (40)
T 2ysi_A 8 TEEIWVENK-----TPDGKVYYYNARTRESAW 34 (40)
T ss_dssp CCCSEEEEE-----CTTSCEEEEETTTCCEES
T ss_pred CCCCCEEEE-----CCCCCEEEEECCCCCEEe
Confidence 345688743 348999999999999877
Done!