BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017932
(363 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1
Length = 233
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 103/183 (56%), Gaps = 11/183 (6%)
Query: 9 TRLRDILRNSDLDTATAGSVRRLLEEDFKVDLS----DRKAFVSEQIDLFL-----QTLE 59
T ++ IL D T +A VR+LLEE KVDLS D A + + D ++LE
Sbjct: 6 TDIKQILGTVDRQTVSAKQVRQLLEERRKVDLSAHKKDLNALILKCFDETAAPSEKESLE 65
Query: 60 KEREEIEDDGNGAVEANADDKEEEEEESESKREKSIKVGRQVKRR--GGGGFNKLCSLST 117
K+ + G A E ++ ++ + + ++E + G++ + + NK LS
Sbjct: 66 KQAPARKTKGKRATENGTEEGKKPAKRTRKRKEDGEEGGKRKRNQDPANNPLNKPMKLSP 125
Query: 118 QLQKVVGAPELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNR 177
+L + +G +L+R + VKKLW YIK + LQDPN+KR ILCD+ L+++F V+++ MF MN+
Sbjct: 126 KLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFEVDTLHMFTMNK 185
Query: 178 ALS 180
L+
Sbjct: 186 YLT 188
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 51/72 (70%)
Query: 253 FTKLCSLSPDLQTFVGVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVN 312
K LSP L F+G+ +L+R + VKKLW YI+ +LQDP ++R I+CD+ L+ +F V+
Sbjct: 117 LNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFEVD 176
Query: 313 SINMFQMNKALT 324
+++MF MNK LT
Sbjct: 177 TLHMFTMNKYLT 188
>sp|Q08747|UAF30_YEAST Upstream activation factor subunit UAF30 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1
SV=1
Length = 228
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 106/201 (52%), Gaps = 26/201 (12%)
Query: 1 MVSDSDLVTRLRDILRNSDLDTATAGSVRRLLEEDFKVDL-SDRKA---FVSEQIDLF-- 54
M +D T + +L + DL+T T VR L+E + +D+ S KA + + +DL
Sbjct: 1 MAELNDYSTMIDILLSDMDLETVTTKKVRMALKEVYAIDVESQGKAINKLIRKHLDLVKE 60
Query: 55 -------LQTLEKEREEIEDDGNGAVEANADDKEEEEEESESKREKSIKVGRQVKRRGGG 107
L+ L KE + + + + EE+ +SE+K G V+++ G
Sbjct: 61 RPRFERSLEDLLKENATLAIELTKEITVSKRSSGEEKNDSETK-------GTHVEKKKGT 113
Query: 108 GF-----NKLCSLSTQLQKVVGAPELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQ 162
+ +LS L ++G EL RTEVV++LW YIK + LQ+PNNK++ILCDE L+
Sbjct: 114 VSKSPISTRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLE 173
Query: 163 ALFGVNSIDMFKMNRALSKHI 183
+ G S +MF+M++ L+ H+
Sbjct: 174 LILG-KSTNMFEMHKILASHM 193
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 7/88 (7%)
Query: 246 VKKRRGGF------TKLCSLSPDLQTFVGVSELARTEVVKKLWAYIREKNLQDPKNRRNI 299
V+K++G T+ +LS L + +G EL RTEVV++LWAYI+ NLQ+P N++ I
Sbjct: 107 VEKKKGTVSKSPISTRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEI 166
Query: 300 ICDEALQVLFRVNSINMFQMNKALTRHI 327
+CDE L+++ S NMF+M+K L H+
Sbjct: 167 LCDEKLELILG-KSTNMFEMHKILASHM 193
>sp|Q05024|TRI1_YEAST Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TRI1 PE=1 SV=1
Length = 226
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Query: 259 LSPDLQTFVGVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQ 318
LS LQ F+G EL RT+VVK +W YI+E +LQ+PK+RR I+CDE ++ +F + MF
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFG-KKMTMFS 184
Query: 319 MNKALTRHIWPLDEADAKSKEKEKQCEQVE 348
MNK LT+H++ DE K +E++KQ + E
Sbjct: 185 MNKLLTKHLFNPDEI-VKHEEEQKQTPEKE 213
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 16/110 (14%)
Query: 115 LSTQLQKVVGAPELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFK 174
LS LQK +G+ EL RT+VVK +W YIKE+ LQ+P ++R+ILCDE ++ +FG + MF
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFG-KKMTMFS 184
Query: 175 MNRALSKHIWPLGAEDENVKQKIGVEDFKNSEEEEEKEQEQEQEHEEEEE 224
MN+ L+KH++ DE VK EEE++Q E+E + E E
Sbjct: 185 MNKLLTKHLF---NPDEIVKH------------EEEQKQTPEKEIKLENE 219
>sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana
GN=At5g14170 PE=1 SV=1
Length = 534
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 88 ESKREKSIKVGRQVKRRGGGGFNKLC-----------SLSTQLQKVVGAPELARTEVVKK 136
E+ R + + G ++KR+G F LST L V+G R ++
Sbjct: 283 ENARSPAPQEGFEIKRKGNQEFAASIRLEMNYVPEKFKLSTALMDVLGIEVETRPRIIAA 342
Query: 137 LWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIWP 185
+W Y+K KLQ+PN+ CD +LQ +FG + +++ +S H+ P
Sbjct: 343 IWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSP 391
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 259 LSPDLQTFVGVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQ 318
LS L +G+ R ++ +W Y++ + LQ+P + CD ALQ +F +
Sbjct: 321 LSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTM 380
Query: 319 MNKALTRHIWP 329
+++ ++ H+ P
Sbjct: 381 VSQKISHHLSP 391
>sp|Q61466|SMRD1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Mus musculus
GN=Smarcd1 PE=1 SV=3
Length = 515
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 15/81 (18%)
Query: 98 GRQVKRRGGGGFNKLCS-------------LSTQLQKVVGAPELARTEVVKKLWVYIKEN 144
G QVKR G N C+ L +L +++G R +++ LW YIK +
Sbjct: 269 GFQVKR--PGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTH 326
Query: 145 KLQDPNNKRKILCDESLQALF 165
KLQDP+ + +LCD+ LQ +F
Sbjct: 327 KLQDPHEREFVLCDKYLQQIF 347
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 259 LSPDLQTFVGVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLF 309
L P L +G+ R +++ LW YI+ LQDP R ++CD+ LQ +F
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIF 347
>sp|Q2TBN1|SMRD1_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1
PE=2 SV=1
Length = 515
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 259 LSPDLQTFVGVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLF 309
L P L +G+ R +++ LW YI+ LQDP R +ICD+ LQ +F
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIF 347
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 15/81 (18%)
Query: 98 GRQVKRRGGGGFNKLCS-------------LSTQLQKVVGAPELARTEVVKKLWVYIKEN 144
G QVKR G N C+ L +L +++G R +++ LW YIK +
Sbjct: 269 GFQVKR--PGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTH 326
Query: 145 KLQDPNNKRKILCDESLQALF 165
KLQDP+ + ++CD+ LQ +F
Sbjct: 327 KLQDPHEREFVICDKYLQQIF 347
>sp|Q96GM5|SMRD1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Homo sapiens
GN=SMARCD1 PE=1 SV=2
Length = 515
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 259 LSPDLQTFVGVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLF 309
L P L +G+ R +++ LW YI+ LQDP R +ICD+ LQ +F
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIF 347
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 15/81 (18%)
Query: 98 GRQVKRRGGGGFNKLCS-------------LSTQLQKVVGAPELARTEVVKKLWVYIKEN 144
G QVKR G N C+ L +L +++G R +++ LW YIK +
Sbjct: 269 GFQVKR--PGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTH 326
Query: 145 KLQDPNNKRKILCDESLQALF 165
KLQDP+ + ++CD+ LQ +F
Sbjct: 327 KLQDPHEREFVICDKYLQQIF 347
>sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis
thaliana GN=NERD PE=1 SV=3
Length = 1773
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 270 SELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIWP 329
S L EV L AYI+ NL+DP+ + +ICD LQ LF + + F+M L H
Sbjct: 825 SFLPMLEVQTLLLAYIKRYNLRDPRRKSQVICDSRLQNLFGKSHVGHFEMLNLLDSHFLK 884
Query: 330 LDEADAKSKEKEKQCEQVEEDEPKH 354
++ A + Q + V+ +EP H
Sbjct: 885 KEQNQA----DDIQGDIVDTEEPNH 905
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 128 LARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHI 183
L EV L YIK L+DP K +++CD LQ LFG + + F+M L H
Sbjct: 827 LPMLEVQTLLLAYIKRYNLRDPRRKSQVICDSRLQNLFGKSHVGHFEMLNLLDSHF 882
>sp|Q9P7S3|SSR3_SCHPO SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr3 PE=1 SV=1
Length = 425
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 259 LSPDLQTFVGVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQ 318
LS +G+ E R ++V LW YI+ LQD + +R I CD+AL+ LF + + +
Sbjct: 208 LSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEADRLYFPR 267
Query: 319 MNKALTRHIWPLD 331
+ + + R + P+D
Sbjct: 268 IPELMNRFLEPID 280
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 115 LSTQLQKVVGAPELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFK 174
LS ++G E R ++V LW YIK ++LQD KR I CD++L+ LF + + +
Sbjct: 208 LSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEADRLYFPR 267
Query: 175 MNRALSKHIWPL 186
+ +++ + P+
Sbjct: 268 IPELMNRFLEPI 279
>sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430 OS=Arabidopsis thaliana
GN=At5g08430 PE=1 SV=2
Length = 553
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 128 LARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKH 182
++R +V + YI + L DP+NK+K++CD+ L LFG +I K+ L KH
Sbjct: 52 ISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKH 106
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 272 LARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIWPLD 331
++R +V + YI ++ L DP N++ ++CD+ L +LF +I F+M ++ L
Sbjct: 52 ISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTI--FRMK------VYDLL 103
Query: 332 EADAKSKEKEKQCEQVEEDEPK 353
E K + + + + EDEP+
Sbjct: 104 EKHYKENQDDSDFDFLYEDEPQ 125
>sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis
thaliana GN=At3g51120 PE=2 SV=3
Length = 1292
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 128 LARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW--- 184
L++ +V L YIK+ L+DP K ++LCD+ L LFG + F+M + L H+
Sbjct: 339 LSQFDVQGLLLDYIKKKNLRDPLQKSQVLCDQMLVKLFGKQRVGHFEMLKLLESHVLIQE 398
Query: 185 -PLGAEDEN 192
P GA+ N
Sbjct: 399 KPKGAKTTN 407
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 269 VSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHI 327
S L++ +V L YI++KNL+DP + ++CD+ L LF + F+M K L H+
Sbjct: 336 TSVLSQFDVQGLLLDYIKKKNLRDPLQKSQVLCDQMLVKLFGKQRVGHFEMLKLLESHV 394
>sp|Q196Z0|VF306_IIV3 Putative SWIB domain-containing protein 070L OS=Invertebrate
iridescent virus 3 GN=IIV3-070L PE=3 SV=1
Length = 282
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 124 GAPELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVN 168
G E +R +V K L YIK+N L+D +NK IL D L+ L V+
Sbjct: 117 GKTEKSRYDVTKYLCAYIKDNDLRDASNKTIILPDAKLKKLLQVD 161
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 252 GFTKLCSLSPDLQTFV----GVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQV 307
G K +S + TF G +E +R +V K L AYI++ +L+D N+ I+ D L+
Sbjct: 97 GLEKPRMISEAMATFADWEYGKTEKSRYDVTKYLCAYIKDNDLRDASNKTIILPDAKLKK 156
Query: 308 LFRVN 312
L +V+
Sbjct: 157 LLQVD 161
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.128 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,841,808
Number of Sequences: 539616
Number of extensions: 6084991
Number of successful extensions: 190673
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2036
Number of HSP's successfully gapped in prelim test: 1331
Number of HSP's that attempted gapping in prelim test: 92547
Number of HSP's gapped (non-prelim): 53704
length of query: 363
length of database: 191,569,459
effective HSP length: 119
effective length of query: 244
effective length of database: 127,355,155
effective search space: 31074657820
effective search space used: 31074657820
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)