Query 017932
Match_columns 363
No_of_seqs 324 out of 1027
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 07:14:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017932.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017932hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v31_A Hypothetical protein RA 100.0 1.2E-29 4E-34 207.3 6.4 89 249-337 4-92 (93)
2 1v31_A Hypothetical protein RA 100.0 1.4E-29 4.9E-34 206.7 6.3 86 107-192 6-91 (93)
3 1uhr_A SWI/SNF related, matrix 99.9 5.1E-29 1.8E-33 203.5 4.3 86 252-337 7-92 (93)
4 1uhr_A SWI/SNF related, matrix 99.9 5.4E-29 1.9E-33 203.3 4.3 84 109-192 8-91 (93)
5 1v32_A AT5G08430, hypothetical 99.9 8.1E-26 2.8E-30 187.1 7.2 74 114-187 15-94 (101)
6 1v32_A AT5G08430, hypothetical 99.9 1.7E-25 6E-30 185.1 7.1 76 257-332 14-95 (101)
7 1q1v_A DEK protein; winged-hel 99.7 1.5E-16 5.2E-21 123.3 6.9 56 1-56 11-67 (70)
8 3dac_M MDM4 protein; MDMX, MDM 97.3 0.00023 7.7E-09 60.5 4.4 81 256-336 24-113 (130)
9 3fea_A MDM4 protein; HDMX, HDM 97.0 0.00042 1.4E-08 56.6 3.5 75 257-331 16-99 (100)
10 1z1m_A Ubiquitin-protein ligas 96.9 0.0017 5.8E-08 54.5 6.3 76 256-331 27-108 (119)
11 2z5s_M MDM4 protein, zebrafish 96.9 0.0015 5.1E-08 55.9 5.8 77 255-331 22-107 (140)
12 1ycq_A MDM2, MDM2; anti-oncoge 96.8 0.0016 5.5E-08 53.8 5.6 75 256-330 11-94 (107)
13 3dac_M MDM4 protein; MDMX, MDM 96.7 0.0015 5.3E-08 55.4 4.5 74 115-188 27-109 (130)
14 2axi_A Ubiquitin-protein ligas 96.4 0.0017 5.6E-08 54.2 2.9 72 256-327 11-88 (115)
15 3fea_A MDM4 protein; HDMX, HDM 96.3 0.0029 9.8E-08 51.7 3.7 72 115-186 18-98 (100)
16 1z1m_A Ubiquitin-protein ligas 96.3 0.0077 2.6E-07 50.5 6.3 77 113-189 28-110 (119)
17 2z5s_M MDM4 protein, zebrafish 95.9 0.0083 2.8E-07 51.3 5.0 76 112-187 23-107 (140)
18 1ycq_A MDM2, MDM2; anti-oncoge 95.9 0.0088 3E-07 49.4 4.9 73 114-186 13-91 (107)
19 2axi_A Ubiquitin-protein ligas 95.4 0.0076 2.6E-07 50.2 2.7 73 114-186 13-91 (115)
20 2kwl_A ACP, acyl carrier prote 70.2 3.4 0.00012 30.8 3.3 58 268-328 1-58 (84)
21 2kwl_A ACP, acyl carrier prote 69.3 3.3 0.00011 30.9 3.0 58 124-184 1-58 (84)
22 1f80_D Acyl carrier protein; t 50.2 10 0.00034 27.8 2.7 55 271-328 2-56 (81)
23 1f80_D Acyl carrier protein; t 45.7 13 0.00045 27.1 2.7 55 127-184 2-56 (81)
24 2dnw_A Acyl carrier protein; A 45.6 16 0.00056 28.2 3.4 60 266-328 5-64 (99)
25 2keb_A DNA polymerase subunit 45.6 25 0.00086 28.6 4.5 44 11-57 14-57 (101)
26 2dnw_A Acyl carrier protein; A 43.8 18 0.00061 28.0 3.4 60 122-184 5-64 (99)
27 2cnr_A FAS, ACP, acyl carrier 42.7 26 0.00089 25.4 4.0 54 272-328 3-56 (82)
28 2lol_A ACP, acyl carrier prote 42.0 22 0.00076 25.9 3.5 54 272-328 2-55 (81)
29 2cnr_A FAS, ACP, acyl carrier 39.6 30 0.001 25.0 3.9 54 128-184 3-56 (82)
30 2lol_A ACP, acyl carrier prote 36.7 29 0.001 25.2 3.4 54 128-184 2-55 (81)
31 2cg5_B Fatty acid synthase; tr 36.2 24 0.00081 27.8 2.9 39 5-43 9-61 (91)
32 3ce7_A Specific mitochodrial a 35.2 36 0.0012 27.0 4.0 42 1-42 12-77 (107)
33 1x3o_A Acyl carrier protein; s 34.4 18 0.00061 26.1 1.9 54 272-328 1-54 (80)
34 1dv5_A APO-DCP, APO-D-alanyl c 34.2 25 0.00086 26.0 2.7 53 273-328 1-53 (80)
35 2ahq_A Sigma-54, RNA polymeras 31.4 52 0.0018 25.2 4.1 40 2-42 16-56 (76)
36 1dd4_C 50S ribosomal protein L 29.9 33 0.0011 23.2 2.4 22 19-40 12-33 (40)
37 1x3o_A Acyl carrier protein; s 28.7 25 0.00084 25.3 1.8 54 128-184 1-54 (80)
38 2jq4_A AGR_C_4658P, hypothetic 28.0 47 0.0016 26.2 3.5 44 2-45 18-80 (105)
39 2l4b_A Acyl carrier protein; i 26.8 10 0.00036 28.4 -0.7 58 271-329 3-61 (88)
40 2ava_A ACP I, acyl carrier pro 26.5 59 0.002 23.6 3.6 53 273-328 1-53 (82)
41 1klp_A ACP, ACPM, meromycolate 26.2 51 0.0017 26.1 3.4 56 271-329 2-57 (115)
42 1nq4_A Oxytetracycline polyket 25.1 87 0.003 23.9 4.5 42 3-44 5-63 (95)
43 1dv5_A APO-DCP, APO-D-alanyl c 25.0 45 0.0016 24.5 2.7 53 129-184 1-53 (80)
44 1klp_A ACP, ACPM, meromycolate 24.9 53 0.0018 26.0 3.3 55 127-184 2-56 (115)
45 2cgq_A Acyl carrier protein AC 24.7 30 0.001 28.1 1.7 52 268-328 23-74 (113)
46 2do1_A Nuclear protein HCC-1; 24.2 1.5E+02 0.0051 21.3 5.2 40 17-57 7-46 (55)
47 3e6c_C CPRK, cyclic nucleotide 23.3 37 0.0013 29.6 2.2 53 256-312 175-229 (250)
48 1af8_A Actinorhodin polyketide 23.1 56 0.0019 24.0 2.9 52 277-329 6-58 (86)
49 1vku_A Acyl carrier protein; T 22.8 57 0.0019 25.6 3.0 55 270-328 11-65 (100)
50 2l4b_A Acyl carrier protein; i 22.6 14 0.00047 27.8 -0.7 55 127-184 3-60 (88)
51 2ava_A ACP I, acyl carrier pro 22.0 91 0.0031 22.5 3.9 53 129-184 1-53 (82)
52 1vku_A Acyl carrier protein; T 21.2 71 0.0024 25.0 3.3 55 126-184 11-65 (100)
53 1jjr_A KU70, thyroid autoantig 21.1 1.1E+02 0.0038 26.4 4.7 46 10-56 51-96 (151)
54 2jq4_A AGR_C_4658P, hypothetic 20.5 48 0.0016 26.1 2.1 56 271-328 17-72 (105)
55 1v54_E Cytochrome C oxidase po 20.3 1.4E+02 0.0049 24.4 4.9 46 3-51 7-52 (109)
No 1
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.96 E-value=1.2e-29 Score=207.26 Aligned_cols=89 Identities=22% Similarity=0.499 Sum_probs=85.0
Q ss_pred CCCCCcccccCCHHHHhhhCCCCccHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017932 249 RRGGFTKLCSLSPDLQTFVGVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (363)
Q Consensus 249 ~~~g~~~~~~LS~~La~flG~~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD~kLk~LFg~d~i~~~~i~klL~~Hl~ 328 (363)
+..+++.+|.||++||+|||..++||++|+++||+|||.||||||.||+.|+||++|+.|||+++|.||+|+++|++||.
T Consensus 4 ~~~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~ 83 (93)
T 1v31_A 4 GSSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLS 83 (93)
T ss_dssp SCCSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCB
T ss_pred CCCCCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhh
Q 017932 329 PLDEADAKS 337 (363)
Q Consensus 329 p~~pi~~~~ 337 (363)
|++||.+.+
T Consensus 84 p~~Pi~~~~ 92 (93)
T 1v31_A 84 PPPPSGPSS 92 (93)
T ss_dssp CCCCSSCCC
T ss_pred CCCCeeCCC
Confidence 999998753
No 2
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.96 E-value=1.4e-29 Score=206.72 Aligned_cols=86 Identities=29% Similarity=0.549 Sum_probs=82.9
Q ss_pred CCCCccccCcHHHHhhhCCCCccHHHHHHHHHHHHHHcCCCCCCCCCcccCChhHhhhhcCCccChhhHHHHHhccCCCC
Q 017932 107 GGFNKLCSLSTQLQKVVGAPELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIWPL 186 (363)
Q Consensus 107 ~g~~k~~~LSp~La~~lG~~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~d~i~~~~m~k~L~~Hl~p~ 186 (363)
.+++.+|.|||+||+|||..++||++||++||+|||.||||||+|||.|+||++|+.|||+++|.||+|+++|++||.|+
T Consensus 6 ~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~p~ 85 (93)
T 1v31_A 6 SGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSPP 85 (93)
T ss_dssp CSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCBCC
T ss_pred CCCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcc
Q 017932 187 GAEDEN 192 (363)
Q Consensus 187 ~p~~~~ 192 (363)
+|+.+.
T Consensus 86 ~Pi~~~ 91 (93)
T 1v31_A 86 PPSGPS 91 (93)
T ss_dssp CCSSCC
T ss_pred CCeeCC
Confidence 999874
No 3
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.95 E-value=5.1e-29 Score=203.46 Aligned_cols=86 Identities=27% Similarity=0.589 Sum_probs=82.7
Q ss_pred CCcccccCCHHHHhhhCCCCccHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCCCCC
Q 017932 252 GFTKLCSLSPDLQTFVGVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIWPLD 331 (363)
Q Consensus 252 g~~~~~~LS~~La~flG~~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD~kLk~LFg~d~i~~~~i~klL~~Hl~p~~ 331 (363)
..+.+|.||++||+|+|..++||++|+++||+|||.||||||.||+.|+||++|+.|||+++|.||+|+++|++||.|++
T Consensus 7 ~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~p~~ 86 (93)
T 1uhr_A 7 GQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPE 86 (93)
T ss_dssp SSCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECSS
T ss_pred cCCCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcCCCC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhh
Q 017932 332 EADAKS 337 (363)
Q Consensus 332 pi~~~~ 337 (363)
||.+.+
T Consensus 87 PI~i~~ 92 (93)
T 1uhr_A 87 PSGPSS 92 (93)
T ss_dssp CCCSSC
T ss_pred CeeCCC
Confidence 998864
No 4
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.95 E-value=5.4e-29 Score=203.31 Aligned_cols=84 Identities=26% Similarity=0.526 Sum_probs=80.9
Q ss_pred CCccccCcHHHHhhhCCCCccHHHHHHHHHHHHHHcCCCCCCCCCcccCChhHhhhhcCCccChhhHHHHHhccCCCCCC
Q 017932 109 FNKLCSLSTQLQKVVGAPELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIWPLGA 188 (363)
Q Consensus 109 ~~k~~~LSp~La~~lG~~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~d~i~~~~m~k~L~~Hl~p~~p 188 (363)
.+.+|.|||+||+|||..++||++||++||+|||.||||||.|||.|+||++|+.|||+++|.||+|+++|++||.|++|
T Consensus 8 ~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~p~~P 87 (93)
T 1uhr_A 8 QPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPEP 87 (93)
T ss_dssp SCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECSSC
T ss_pred CCCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcCCCCC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q 017932 189 EDEN 192 (363)
Q Consensus 189 ~~~~ 192 (363)
+.+.
T Consensus 88 I~i~ 91 (93)
T 1uhr_A 88 SGPS 91 (93)
T ss_dssp CCSS
T ss_pred eeCC
Confidence 9874
No 5
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.92 E-value=8.1e-26 Score=187.09 Aligned_cols=74 Identities=34% Similarity=0.478 Sum_probs=70.7
Q ss_pred cCcHHHHhhh---CC---CCccHHHHHHHHHHHHHHcCCCCCCCCCcccCChhHhhhhcCCccChhhHHHHHhccCCCCC
Q 017932 114 SLSTQLQKVV---GA---PELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIWPLG 187 (363)
Q Consensus 114 ~LSp~La~~l---G~---~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~d~i~~~~m~k~L~~Hl~p~~ 187 (363)
.+||+|++|| |. .++||++||++||+|||+||||||.|||.|+||++|+.|||+++|+||+|+++|++||.+..
T Consensus 15 w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl~~~~ 94 (101)
T 1v32_A 15 WGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKENQ 94 (101)
T ss_dssp SSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCSCC
T ss_pred cCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHcCccc
Confidence 5899999999 98 57999999999999999999999999999999999999999999999999999999998753
No 6
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.92 E-value=1.7e-25 Score=185.08 Aligned_cols=76 Identities=26% Similarity=0.467 Sum_probs=72.0
Q ss_pred ccCCHHHHhhh---CC---CCccHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCCCC
Q 017932 257 CSLSPDLQTFV---GV---SELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIWPL 330 (363)
Q Consensus 257 ~~LS~~La~fl---G~---~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD~kLk~LFg~d~i~~~~i~klL~~Hl~p~ 330 (363)
-.+|++||+|| |. .++||++|+++||+|||.||||||.|||.|+||++|+.|||+++|.||+|+++|++||.+.
T Consensus 14 ~w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl~~~ 93 (101)
T 1v32_A 14 GWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKEN 93 (101)
T ss_dssp SSSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCSC
T ss_pred ccCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHcCcc
Confidence 36899999999 88 5799999999999999999999999999999999999999999999999999999999986
Q ss_pred Cc
Q 017932 331 DE 332 (363)
Q Consensus 331 ~p 332 (363)
+.
T Consensus 94 ~e 95 (101)
T 1v32_A 94 QD 95 (101)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 7
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=99.65 E-value=1.5e-16 Score=123.35 Aligned_cols=56 Identities=20% Similarity=0.464 Sum_probs=55.0
Q ss_pred CCChhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHh-CCCChhhHHHHHHHHHHHHh
Q 017932 1 MVSDSDLVTRLRDILRNSDLDTATAGSVRRLLEEDF-KVDLSDRKAFVSEQIDLFLQ 56 (363)
Q Consensus 1 mvsd~ei~~~I~~IL~~sDl~tvT~k~VR~~LE~~~-gvDLs~kK~~I~~~I~~~l~ 56 (363)
||||++|...|++||++|||++||.|+||++|++.| |+||+++|+||+.+|+.||+
T Consensus 11 ~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~kK~~I~~~I~~~L~ 67 (70)
T 1q1v_A 11 PPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDFIKTTVKELIS 67 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999 99999999999999999996
No 8
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=97.25 E-value=0.00023 Score=60.53 Aligned_cols=81 Identities=25% Similarity=0.360 Sum_probs=66.4
Q ss_pred cccCCHHHHhhh---CC--CCccHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhhhhhhccCccChhh---HHHHHHcc
Q 017932 256 LCSLSPDLQTFV---GV--SELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVNSINMFQ---MNKALTRH 326 (363)
Q Consensus 256 ~~~LS~~La~fl---G~--~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD-~kLk~LFg~d~i~~~~---i~klL~~H 326 (363)
.++--+.|-.|| |. ...|..+|+..+=+||-.+.|.||.+..+|.|- +.|..+||+++|++.+ +..+|.++
T Consensus 24 ~Vrpk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~N 103 (130)
T 3dac_M 24 QVHPRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRN 103 (130)
T ss_dssp EEEECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHH
T ss_pred ecCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhh
Confidence 344556777776 54 489999999999999999999999999999996 8899999999999998 99999999
Q ss_pred CCCCCccchh
Q 017932 327 IWPLDEADAK 336 (363)
Q Consensus 327 l~p~~pi~~~ 336 (363)
|.++..-+.+
T Consensus 104 Lv~~~~~~a~ 113 (130)
T 3dac_M 104 LVILNNSDAA 113 (130)
T ss_dssp EEEC------
T ss_pred eecccCcchH
Confidence 9998755544
No 9
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=97.00 E-value=0.00042 Score=56.64 Aligned_cols=75 Identities=21% Similarity=0.308 Sum_probs=63.6
Q ss_pred ccCCHHHHhhh---CC--CCccHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhhhhhhccCccChh---hHHHHHHccC
Q 017932 257 CSLSPDLQTFV---GV--SELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVNSINMF---QMNKALTRHI 327 (363)
Q Consensus 257 ~~LS~~La~fl---G~--~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD-~kLk~LFg~d~i~~~---~i~klL~~Hl 327 (363)
++--+.|-.+| |. +..|..+|+..+=+||-.+.|.||.+..+|.|. +.|..+||+++|++. .+..+|.+||
T Consensus 16 Vrpk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~nL 95 (100)
T 3fea_A 16 VRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNL 95 (100)
T ss_dssp BEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHHE
T ss_pred cCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhhc
Confidence 44456777776 54 489999999999999999999999999999996 889999999999998 7888999988
Q ss_pred CCCC
Q 017932 328 WPLD 331 (363)
Q Consensus 328 ~p~~ 331 (363)
..+.
T Consensus 96 v~~~ 99 (100)
T 3fea_A 96 VTLA 99 (100)
T ss_dssp EC--
T ss_pred eecC
Confidence 7653
No 10
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=96.88 E-value=0.0017 Score=54.50 Aligned_cols=76 Identities=29% Similarity=0.328 Sum_probs=62.1
Q ss_pred cccCCHHHHhhh---CC--CCccHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhhhhhhccCccChhhHHHHHHccCCC
Q 017932 256 LCSLSPDLQTFV---GV--SELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVNSINMFQMNKALTRHIWP 329 (363)
Q Consensus 256 ~~~LS~~La~fl---G~--~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD-~kLk~LFg~d~i~~~~i~klL~~Hl~p 329 (363)
.++-.+.|-.|| |. ...|+-+|+..+-+||-.+.|.|+.+..+|.|. +.|..|||+.+|++-+...+...|..-
T Consensus 27 ~VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~n 106 (119)
T 1z1m_A 27 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRN 106 (119)
T ss_dssp CCCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHHSCS
T ss_pred cccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 455566666666 54 378999999999999999999999999999997 778999999999998777666655544
Q ss_pred CC
Q 017932 330 LD 331 (363)
Q Consensus 330 ~~ 331 (363)
+-
T Consensus 107 Lv 108 (119)
T 1z1m_A 107 LV 108 (119)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 11
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=96.86 E-value=0.0015 Score=55.90 Aligned_cols=77 Identities=23% Similarity=0.328 Sum_probs=65.3
Q ss_pred ccccCCHHHHhhh---CC--CCccHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhhhhhhccCccChhhHH---HHHHc
Q 017932 255 KLCSLSPDLQTFV---GV--SELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVNSINMFQMN---KALTR 325 (363)
Q Consensus 255 ~~~~LS~~La~fl---G~--~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD-~kLk~LFg~d~i~~~~i~---klL~~ 325 (363)
..++--+.|-.|| |. ...|+-+|+-.|=+||-.+.|.|+.+..+|.|. +.|..||||.+|++-+.. ++|.+
T Consensus 22 ~~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~~ 101 (140)
T 2z5s_M 22 TQVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLKR 101 (140)
T ss_dssp CCBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHHH
T ss_pred ceecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHH
Confidence 3667778888888 54 389999999999999999999999999999997 788999999999998665 66666
Q ss_pred cCCCCC
Q 017932 326 HIWPLD 331 (363)
Q Consensus 326 Hl~p~~ 331 (363)
-|.+..
T Consensus 102 NLv~~~ 107 (140)
T 2z5s_M 102 NLVILN 107 (140)
T ss_dssp HEECC-
T ss_pred hccccc
Confidence 666665
No 12
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=96.83 E-value=0.0016 Score=53.77 Aligned_cols=75 Identities=25% Similarity=0.420 Sum_probs=60.6
Q ss_pred cccCCHHHHhhh---CC--CCccHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhhhhhhccCccChhhHH---HHHHcc
Q 017932 256 LCSLSPDLQTFV---GV--SELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVNSINMFQMN---KALTRH 326 (363)
Q Consensus 256 ~~~LS~~La~fl---G~--~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD-~kLk~LFg~d~i~~~~i~---klL~~H 326 (363)
.++-.+.|-.+| |. ...|+.+|+-.+=+||-.+.|.|+.+..+|.|. +.|..||||.+|++-+.. ++|.+.
T Consensus 11 ~VrPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~n 90 (107)
T 1ycq_A 11 LVQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMISRN 90 (107)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHHHHHTT
T ss_pred ccCccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 344556666776 44 378999999999999999999999999999997 778999999999998777 455554
Q ss_pred CCCC
Q 017932 327 IWPL 330 (363)
Q Consensus 327 l~p~ 330 (363)
+.+.
T Consensus 91 Lv~~ 94 (107)
T 1ycq_A 91 LVSA 94 (107)
T ss_dssp EEES
T ss_pred cccc
Confidence 4443
No 13
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=96.66 E-value=0.0015 Score=55.44 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=64.0
Q ss_pred CcHHHHhhh---CC--CCccHHHHHHHHHHHHHHcCCCCCCCCCcccCC-hhHhhhhcCCccChhh---HHHHHhccCCC
Q 017932 115 LSTQLQKVV---GA--PELARTEVVKKLWVYIKENKLQDPNNKRKILCD-ESLQALFGVNSIDMFK---MNRALSKHIWP 185 (363)
Q Consensus 115 LSp~La~~l---G~--~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cD-e~Lk~lF~~d~i~~~~---m~k~L~~Hl~p 185 (363)
--|.|-.|| |. ...|..+|+-.|=+||-.+.|.||.+...|.|- +.|..+||+++|++.+ +...|.++|.+
T Consensus 27 pk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~NLv~ 106 (130)
T 3dac_M 27 PRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRNLVI 106 (130)
T ss_dssp ECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHHEEE
T ss_pred CcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhheec
Confidence 346676666 64 578999999999999999999999999999996 7899999999999998 99999999988
Q ss_pred CCC
Q 017932 186 LGA 188 (363)
Q Consensus 186 ~~p 188 (363)
+..
T Consensus 107 ~~~ 109 (130)
T 3dac_M 107 LNN 109 (130)
T ss_dssp C--
T ss_pred ccC
Confidence 763
No 14
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=96.39 E-value=0.0017 Score=54.20 Aligned_cols=72 Identities=29% Similarity=0.353 Sum_probs=58.8
Q ss_pred cccCCHHHHhhh---CC--CCccHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhhhhhhccCccChhhHHHHHHccC
Q 017932 256 LCSLSPDLQTFV---GV--SELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVNSINMFQMNKALTRHI 327 (363)
Q Consensus 256 ~~~LS~~La~fl---G~--~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD-~kLk~LFg~d~i~~~~i~klL~~Hl 327 (363)
.++-.+.|-.|| |. ...|+.+|+-.+=+||-.+.|.||.+..+|.|. +.|..||||.+|++-+...+...+.
T Consensus 11 ~VrPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~ 88 (115)
T 2axi_A 11 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIY 88 (115)
T ss_dssp EEEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHHHHH
T ss_pred ccCccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHH
Confidence 344456666776 44 378999999999999999999999999999997 7789999999999987666555443
No 15
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=96.27 E-value=0.0029 Score=51.72 Aligned_cols=72 Identities=26% Similarity=0.387 Sum_probs=61.6
Q ss_pred CcHHHHhhh---CC--CCccHHHHHHHHHHHHHHcCCCCCCCCCcccCC-hhHhhhhcCCccChh---hHHHHHhccCCC
Q 017932 115 LSTQLQKVV---GA--PELARTEVVKKLWVYIKENKLQDPNNKRKILCD-ESLQALFGVNSIDMF---KMNRALSKHIWP 185 (363)
Q Consensus 115 LSp~La~~l---G~--~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cD-e~Lk~lF~~d~i~~~---~m~k~L~~Hl~p 185 (363)
--|.|-.+| |. ...|..+|+..|=+||-.+.|.||.+...|.|- +.|-.+||+++|++. .+...|.+||..
T Consensus 18 pk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~nLv~ 97 (100)
T 3fea_A 18 PKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKNLVT 97 (100)
T ss_dssp ECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHHEEC
T ss_pred CcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhhcee
Confidence 346666666 54 578999999999999999999999999999996 788999999999887 888899998866
Q ss_pred C
Q 017932 186 L 186 (363)
Q Consensus 186 ~ 186 (363)
+
T Consensus 98 ~ 98 (100)
T 3fea_A 98 L 98 (100)
T ss_dssp -
T ss_pred c
Confidence 4
No 16
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=96.26 E-value=0.0077 Score=50.52 Aligned_cols=77 Identities=25% Similarity=0.315 Sum_probs=61.6
Q ss_pred ccCcHHHHhhh---CC--CCccHHHHHHHHHHHHHHcCCCCCCCCCcccCC-hhHhhhhcCCccChhhHHHHHhccCCCC
Q 017932 113 CSLSTQLQKVV---GA--PELARTEVVKKLWVYIKENKLQDPNNKRKILCD-ESLQALFGVNSIDMFKMNRALSKHIWPL 186 (363)
Q Consensus 113 ~~LSp~La~~l---G~--~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cD-e~Lk~lF~~d~i~~~~m~k~L~~Hl~p~ 186 (363)
.+..+.|-.|| |. ...|+.+|+..|=+||-...|.|+.+..+|.|. +.|-.|||+..|++.+-..+...|...+
T Consensus 28 VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~nL 107 (119)
T 1z1m_A 28 VRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNL 107 (119)
T ss_dssp CCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHHSCSC
T ss_pred ccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhc
Confidence 33445555555 54 568899999999999999999999999999997 7789999999999888777776666555
Q ss_pred CCC
Q 017932 187 GAE 189 (363)
Q Consensus 187 ~p~ 189 (363)
-..
T Consensus 108 v~~ 110 (119)
T 1z1m_A 108 VVV 110 (119)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
No 17
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=95.93 E-value=0.0083 Score=51.32 Aligned_cols=76 Identities=22% Similarity=0.330 Sum_probs=62.4
Q ss_pred cccCcHHHHhhh---CC--CCccHHHHHHHHHHHHHHcCCCCCCCCCcccCC-hhHhhhhcCCccChhhHH---HHHhcc
Q 017932 112 LCSLSTQLQKVV---GA--PELARTEVVKKLWVYIKENKLQDPNNKRKILCD-ESLQALFGVNSIDMFKMN---RALSKH 182 (363)
Q Consensus 112 ~~~LSp~La~~l---G~--~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cD-e~Lk~lF~~d~i~~~~m~---k~L~~H 182 (363)
.++.-|.|-.|| |. ...|+.+|+-.|=+||-...|.|+.+..+|.|. +.|-.|||+..|++.+.. +.|.+.
T Consensus 23 ~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~~N 102 (140)
T 2z5s_M 23 QVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLKRN 102 (140)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence 455567888887 54 578999999999999999999999999999996 778999999999887655 666666
Q ss_pred CCCCC
Q 017932 183 IWPLG 187 (363)
Q Consensus 183 l~p~~ 187 (363)
|.+..
T Consensus 103 Lv~~~ 107 (140)
T 2z5s_M 103 LVILN 107 (140)
T ss_dssp EECC-
T ss_pred ccccc
Confidence 65554
No 18
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=95.91 E-value=0.0088 Score=49.37 Aligned_cols=73 Identities=25% Similarity=0.376 Sum_probs=58.3
Q ss_pred cCcHHHHhhh---CC--CCccHHHHHHHHHHHHHHcCCCCCCCCCcccCC-hhHhhhhcCCccChhhHHHHHhccCCCC
Q 017932 114 SLSTQLQKVV---GA--PELARTEVVKKLWVYIKENKLQDPNNKRKILCD-ESLQALFGVNSIDMFKMNRALSKHIWPL 186 (363)
Q Consensus 114 ~LSp~La~~l---G~--~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cD-e~Lk~lF~~d~i~~~~m~k~L~~Hl~p~ 186 (363)
+-.+.|-.+| |. ...|+.+|+..|=+||-...|.|+.+...|.|. |.|-.+||+..|++.+...+...|...+
T Consensus 13 rPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~nL 91 (107)
T 1ycq_A 13 QPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMISRNL 91 (107)
T ss_dssp EECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHHHHHTTE
T ss_pred CccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhc
Confidence 3445666665 54 568999999999999999999999999999997 7789999999998887775544444333
No 19
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=95.37 E-value=0.0076 Score=50.23 Aligned_cols=73 Identities=26% Similarity=0.355 Sum_probs=58.7
Q ss_pred cCcHHHHhhh---CC--CCccHHHHHHHHHHHHHHcCCCCCCCCCcccCC-hhHhhhhcCCccChhhHHHHHhccCCCC
Q 017932 114 SLSTQLQKVV---GA--PELARTEVVKKLWVYIKENKLQDPNNKRKILCD-ESLQALFGVNSIDMFKMNRALSKHIWPL 186 (363)
Q Consensus 114 ~LSp~La~~l---G~--~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cD-e~Lk~lF~~d~i~~~~m~k~L~~Hl~p~ 186 (363)
+-.+.|-.|| |. ...|+.+|+-.+=+||-...|.|+.+..+|.|. |.|-.|||+..|++.+-..+...+...+
T Consensus 13 rPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~nL 91 (115)
T 2axi_A 13 RPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNL 91 (115)
T ss_dssp EECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHHHHHTTE
T ss_pred CccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHhc
Confidence 3455666666 54 568999999999999999999999999999997 7789999999998887666555554443
No 20
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=70.18 E-value=3.4 Score=30.83 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=47.4
Q ss_pred CCCCccHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017932 268 GVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (363)
Q Consensus 268 G~~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD~kLk~LFg~d~i~~~~i~klL~~Hl~ 328 (363)
|...|+|.++...|.++|...--.+ ...|..|..|..-+|-||+.+.+|.-.|..+|-
T Consensus 1 ~~~~m~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 58 (84)
T 2kwl_A 1 GPGSMDNDEIFSKVRSIISEQLDKK---EDEITTDSRFVEDLNADSLDIYELLYLLEEAFD 58 (84)
T ss_dssp CCCCSTHHHHHHHHHHHHHHHHCCC---GGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCC---cccCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 5567999999999999988753233 356889999977899999999999999988764
No 21
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=69.32 E-value=3.3 Score=30.91 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=47.8
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCCCCCCCcccCChhHhhhhcCCccChhhHHHHHhccCC
Q 017932 124 GAPELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (363)
Q Consensus 124 G~~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~d~i~~~~m~k~L~~Hl~ 184 (363)
|...|+|.++...|.++|...-=.++ ..|..|..|..-+|-|++.+.+|...|..+|.
T Consensus 1 ~~~~m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 58 (84)
T 2kwl_A 1 GPGSMDNDEIFSKVRSIISEQLDKKE---DEITTDSRFVEDLNADSLDIYELLYLLEEAFD 58 (84)
T ss_dssp CCCCSTHHHHHHHHHHHHHHHHCCCG---GGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCc---ccCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 56689999999999999987632343 35889999977899999999999999988763
No 22
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=50.15 E-value=10 Score=27.83 Aligned_cols=55 Identities=7% Similarity=0.163 Sum_probs=42.6
Q ss_pred CccHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017932 271 ELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (363)
Q Consensus 271 ~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD~kLk~LFg~d~i~~~~i~klL~~Hl~ 328 (363)
.|++.++...|.++|...--.++ ..|-.|..|..-+|-||+.+.+|...|..+|-
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 56 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVDE---ADVKLEASFKEDLGADXLDVVELVMELEDEFD 56 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCCS---SCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCH---HhCCCccchHHHcCCcHHHHHHHHHHHHHHhC
Confidence 57888888888888877532333 46889999977899999999999999999875
No 23
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=45.68 E-value=13 Score=27.12 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=42.8
Q ss_pred CccHHHHHHHHHHHHHHcCCCCCCCCCcccCChhHhhhhcCCccChhhHHHHHhccCC
Q 017932 127 ELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (363)
Q Consensus 127 ~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~d~i~~~~m~k~L~~Hl~ 184 (363)
.|+|.++...|.++|...-=.++ ..|..|..|..-+|-|++.+.+|...|..+|.
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~~---~~i~~~~~l~~dlG~DSl~~vel~~~le~~fg 56 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVDE---ADVKLEASFKEDLGADXLDVVELVMELEDEFD 56 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCCS---SCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCH---HhCCCccchHHHcCCcHHHHHHHHHHHHHHhC
Confidence 47888888888888887643343 35889999977899999999999999999874
No 24
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.61 E-value=16 Score=28.19 Aligned_cols=60 Identities=10% Similarity=0.180 Sum_probs=46.5
Q ss_pred hhCCCCccHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017932 266 FVGVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (363)
Q Consensus 266 flG~~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD~kLk~LFg~d~i~~~~i~klL~~Hl~ 328 (363)
|.++..|++.++...|.++|...--.++ ..|-.|..|..-+|.|++.+.+|.-.|..+|-
T Consensus 5 ~~~m~~m~~~~i~~~l~~~l~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~le~~fg 64 (99)
T 2dnw_A 5 SSGMPPLTLEGIQDRVLYVLKLYDKIDP---EKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFG 64 (99)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHCTTSCT---TTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHhCCCH---hhCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 3456679999999999999987532233 45778888854579999999999999988774
No 25
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=45.60 E-value=25 Score=28.56 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=29.8
Q ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhh
Q 017932 11 LRDILRNSDLDTATAGSVRRLLEEDFKVDLSDRKAFVSEQIDLFLQT 57 (363)
Q Consensus 11 I~~IL~~sDl~tvT~k~VR~~LE~~~gvDLs~kK~~I~~~I~~~l~~ 57 (363)
+.-+.+.-.++.||...|+++|+. ||++.++ +.|..++++.+.-
T Consensus 14 ~~~~~~~~~~~~Vsae~L~eEfde-fGi~~~d--~VldKc~ELC~~y 57 (101)
T 2keb_A 14 LEVLFQGPGSMSASAQQLAEELQI-FGLDCEE--ALIEKLVELCVQY 57 (101)
T ss_dssp ----------CCCCHHHHHHHHHH-HTCBCCH--HHHHHHHHHHHHH
T ss_pred chheeeCCchhhccHHHHHHHHHH-cCCCCCH--HHHHHHHHHHHHc
Confidence 334556677899999999999975 9999999 7888888887753
No 26
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.76 E-value=18 Score=27.96 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=47.3
Q ss_pred hhCCCCccHHHHHHHHHHHHHHcCCCCCCCCCcccCChhHhhhhcCCccChhhHHHHHhccCC
Q 017932 122 VVGAPELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (363)
Q Consensus 122 ~lG~~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~d~i~~~~m~k~L~~Hl~ 184 (363)
+.++..|++.+|...|..+|...--.++ ..|..|..|..-+|-|++.+.+|...|..+|.
T Consensus 5 ~~~m~~m~~~~i~~~l~~~l~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~le~~fg 64 (99)
T 2dnw_A 5 SSGMPPLTLEGIQDRVLYVLKLYDKIDP---EKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFG 64 (99)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHCTTSCT---TTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHhCCCH---hhCCCCCchhhhcCCCHHHHHHHHHHHHHHHC
Confidence 3456779999999999999987632333 35788888755578999999999999998874
No 27
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=42.74 E-value=26 Score=25.40 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=43.1
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017932 272 LARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (363)
Q Consensus 272 ~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD~kLk~LFg~d~i~~~~i~klL~~Hl~ 328 (363)
|+|.++...|.++|...-=.++ ..|-.|..|..-+|.||+.+.+|...|..+|-
T Consensus 3 m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fg 56 (82)
T 2cnr_A 3 ATQEEIVAGLAEIVNEIAGIPV---EDVKLDKSFTDDLDVDSLSMVEVVVAAEERFD 56 (82)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCT---TTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGT
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCCcchhhccCCChHHHHHHHHHHHHHhC
Confidence 7899998888888877532232 46788888866689999999999999999874
No 28
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=41.95 E-value=22 Score=25.86 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=42.7
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017932 272 LARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (363)
Q Consensus 272 ~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD~kLk~LFg~d~i~~~~i~klL~~Hl~ 328 (363)
|+|.++...|.++|...-=.++ ..|-.|..|..-+|.||+.+.+|...|..+|-
T Consensus 2 m~~~~i~~~l~~ii~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~el~~~le~~fg 55 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNKDK---AIITTDSRFIEDLKADSLDTVELMMAIEVEYG 55 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCCCT---TTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHCCCh---hhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHC
Confidence 6888888888888877532232 45888888877789999999999999988764
No 29
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=39.62 E-value=30 Score=25.02 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCCCCcccCChhHhhhhcCCccChhhHHHHHhccCC
Q 017932 128 LARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (363)
Q Consensus 128 ~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~d~i~~~~m~k~L~~Hl~ 184 (363)
|+|.++...|..+|.+.-=.++ ..|..|..|..-+|-|++.+.+|...|..+|.
T Consensus 3 m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fg 56 (82)
T 2cnr_A 3 ATQEEIVAGLAEIVNEIAGIPV---EDVKLDKSFTDDLDVDSLSMVEVVVAAEERFD 56 (82)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCT---TTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGT
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCCcchhhccCCChHHHHHHHHHHHHHhC
Confidence 7888998888888887642333 35888888866688999999999999999874
No 30
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=36.71 E-value=29 Score=25.18 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=42.9
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCCCCcccCChhHhhhhcCCccChhhHHHHHhccCC
Q 017932 128 LARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (363)
Q Consensus 128 ~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~d~i~~~~m~k~L~~Hl~ 184 (363)
|+|.++...|.++|.+.-=.++ ..|..|..|..-+|-|++.+.+|...|..+|.
T Consensus 2 m~~~~i~~~l~~ii~~~l~~~~---~~i~~~~~l~~dlG~DSl~~~el~~~le~~fg 55 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNKDK---AIITTDSRFIEDLKADSLDTVELMMAIEVEYG 55 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCCCT---TTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHCCCh---hhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHC
Confidence 6788888888888877532333 35888999877789999999999999998773
No 31
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=36.18 E-value=24 Score=27.76 Aligned_cols=39 Identities=38% Similarity=0.477 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHhcCCC--------------CCcCHHHHHHHHHHHhCCCChhh
Q 017932 5 SDLVTRLRDILRNSDL--------------DTATAGSVRRLLEEDFKVDLSDR 43 (363)
Q Consensus 5 ~ei~~~I~~IL~~sDl--------------~tvT~k~VR~~LE~~~gvDLs~k 43 (363)
+.|...|-.||.-.++ +++..=.||..|+..||+.|+..
T Consensus 9 ~~v~~~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~lp~~ 61 (91)
T 2cg5_B 9 RDLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSVR 61 (91)
T ss_dssp TTHHHHHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHHCCCCCHH
T ss_pred HHHHHHHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHHCCCCCHH
Confidence 5678888888876543 34445678999999999999854
No 32
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=35.22 E-value=36 Score=27.04 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=0.0
Q ss_pred CC--ChhHHHHHHHHHHhcC----------------------CCCCcCHHHHHHHHHHHhCCCChh
Q 017932 1 MV--SDSDLVTRLRDILRNS----------------------DLDTATAGSVRRLLEEDFKVDLSD 42 (363)
Q Consensus 1 mv--sd~ei~~~I~~IL~~s----------------------Dl~tvT~k~VR~~LE~~~gvDLs~ 42 (363)
|+ +.++|...|.+||+.. .++++..=.+.-.||+.||+.+.+
T Consensus 12 m~~~~~~~i~~~i~~il~e~l~~~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i~~ 77 (107)
T 3ce7_A 12 VVDTDINAVTNYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPD 77 (107)
T ss_dssp CCTTCHHHHHHHHHHHHHTTBCTTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCCH
T ss_pred CccCCHHHHHHHHHHHHHHHhCCccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCCCCH
No 33
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=34.36 E-value=18 Score=26.11 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=41.2
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017932 272 LARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (363)
Q Consensus 272 ~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD~kLk~LFg~d~i~~~~i~klL~~Hl~ 328 (363)
|+|.++...|.++|...-=.+ ...|-.|..|..-+|.||+.+.+|...|..+|-
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fg 54 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVE---PEKVTLEARFIEDLGADSLDTVELIMGLEDEFG 54 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCC---GGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhCCC---HHHCCCcCcHHhhcCccHHHHHHHHHHHHHHHC
Confidence 678888888888777642122 245778888877789999999999999988764
No 34
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=34.21 E-value=25 Score=26.03 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017932 273 ARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (363)
Q Consensus 273 sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD~kLk~LFg~d~i~~~~i~klL~~Hl~ 328 (363)
++.++...|-+||...--.++ ..|..|..|..+.+-||+.+.+|.-.|..+|-
T Consensus 1 ~~~~i~~~i~~il~~~~~~~~---~~i~~d~~l~~~g~lDSl~~velv~~lE~~fg 53 (80)
T 1dv5_A 1 ADEAIKNGVLDILADLTGSDD---VKKNLDLNLFETGLLDSMGTVQLLLELQSQFG 53 (80)
T ss_dssp CCHHHHHHHHHHHHHHHTSSS---TTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSC
T ss_pred CHHHHHHHHHHHHHHHhCCCc---ccCCCCcchhhccCcChHHHHHHHHHHHHHhC
Confidence 456788888888887652232 34788999988766999999999999999873
No 35
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=31.41 E-value=52 Score=25.19 Aligned_cols=40 Identities=15% Similarity=0.391 Sum_probs=34.9
Q ss_pred CChhHHHHHHHHHHhcCCCCC-cCHHHHHHHHHHHhCCCChh
Q 017932 2 VSDSDLVTRLRDILRNSDLDT-ATAGSVRRLLEEDFKVDLSD 42 (363)
Q Consensus 2 vsd~ei~~~I~~IL~~sDl~t-vT~k~VR~~LE~~~gvDLs~ 42 (363)
+|.+.|...|.+|+..-|... +|-.+|...|.+. |++++-
T Consensus 16 ~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~-Gi~IaR 56 (76)
T 2ahq_A 16 LTQGELMKLIKEIVENEDKRKPYSDQEIANILKEK-GFKVAR 56 (76)
T ss_dssp CCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT-SSCCCH
T ss_pred ccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-CCCccH
Confidence 578899999999999999765 7999999999887 999873
No 36
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=29.93 E-value=33 Score=23.24 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=16.8
Q ss_pred CCCCcCHHHHHHHHHHHhCCCC
Q 017932 19 DLDTATAGSVRRLLEEDFKVDL 40 (363)
Q Consensus 19 Dl~tvT~k~VR~~LE~~~gvDL 40 (363)
.|.-+-...+.+.||++|||+-
T Consensus 12 ~lTvlE~~eLvk~leekfGVsa 33 (40)
T 1dd4_C 12 KLTVSELAELVKKLEDKFGVTA 33 (40)
T ss_dssp TSCHHHHHHHHHHHHHHTCCCS
T ss_pred hCcHHHHHHHHHHHHHHHCCCc
Confidence 3444446789999999999974
No 37
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=28.72 E-value=25 Score=25.33 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=41.0
Q ss_pred ccHHHHHHHHHHHHHHcCCCCCCCCCcccCChhHhhhhcCCccChhhHHHHHhccCC
Q 017932 128 LARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (363)
Q Consensus 128 ~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~d~i~~~~m~k~L~~Hl~ 184 (363)
|+|.++...|.++|...-=.++ ..|..|..|..-+|-|++.+.+|...|..+|.
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fg 54 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVEP---EKVTLEARFIEDLGADSLDTVELIMGLEDEFG 54 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCG---GGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCcCcHHhhcCccHHHHHHHHHHHHHHHC
Confidence 5788887787777776421233 34788888867789999999999999998773
No 38
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=27.95 E-value=47 Score=26.16 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=26.7
Q ss_pred CChhHHHHHHHHHHhcC-----C--------------CCCcCHHHHHHHHHHHhCCCChhhHH
Q 017932 2 VSDSDLVTRLRDILRNS-----D--------------LDTATAGSVRRLLEEDFKVDLSDRKA 45 (363)
Q Consensus 2 vsd~ei~~~I~~IL~~s-----D--------------l~tvT~k~VR~~LE~~~gvDLs~kK~ 45 (363)
++.+++...|.+||... + ++++..=.+...||+.||+.+....-
T Consensus 18 ~~~~~i~~~i~~il~~~l~~~v~~~~i~~d~~l~dlGlDSL~~veLv~~lE~~fgI~i~~~~l 80 (105)
T 2jq4_A 18 YFQGHMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLL 80 (105)
T ss_dssp -----CHHHHHHHHHHTSCCSSCGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCCCcccCCCCCCHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHh
Confidence 34456666777777662 1 22334567889999999999986443
No 39
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=26.78 E-value=10 Score=28.44 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=44.7
Q ss_pred CccHHHHHHHHHHHHhhcC-CCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCCC
Q 017932 271 ELARTEVVKKLWAYIREKN-LQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIWP 329 (363)
Q Consensus 271 ~~sR~~vvk~lW~YIK~nn-LqDp~nkr~I~cD~kLk~LFg~d~i~~~~i~klL~~Hl~p 329 (363)
.|+|.+|...|+++|...- +.+ -+...|-.|..|..-+|-||+.+.+|.-.|..+|--
T Consensus 3 ~m~~~~i~~~v~~~i~~~l~~~~-~~~~~i~~d~~l~~dlglDSl~~vel~~~lE~~fgi 61 (88)
T 2l4b_A 3 SMVSEEIKAQVMESVIGCLKLND-EQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSL 61 (88)
T ss_dssp SSSCHHHHHHHHHHHHHHHTCCH-HHHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHhhCC-CCHhhCCCCCchhhccCCcHHHHHHHHHHHHHHHCC
Confidence 5889999999999998753 211 012457788888777899999999999999988743
No 40
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=26.53 E-value=59 Score=23.58 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017932 273 ARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (363)
Q Consensus 273 sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD~kLk~LFg~d~i~~~~i~klL~~Hl~ 328 (363)
||.++...|.++|...=-.++. ..|-.|..|. =+|.||+.+.+|.-.|..+|-
T Consensus 1 ~~~~i~~~l~~i~~~~l~~~~~--~~i~~~~~l~-dlG~DSl~~vel~~~le~~fg 53 (82)
T 2ava_A 1 AKKETIDKVSDIVKEKLALGAD--VVVTADSEFS-KLGADSLDTVEIVMNLEEEFG 53 (82)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSS--SCCCSSCCSC-CCTTCCSCHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHhCCCcc--cccCCCCchh-hcCCCHHHHHHHHHHHHHHHC
Confidence 4667777777777664222322 3678888887 479999999999999999874
No 41
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=26.17 E-value=51 Score=26.13 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=44.1
Q ss_pred CccHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCCC
Q 017932 271 ELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIWP 329 (363)
Q Consensus 271 ~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD~kLk~LFg~d~i~~~~i~klL~~Hl~p 329 (363)
.|++.++...|.++|...-=.++ ..|-.|..|..-+|.||+.+.+|.-.|..+|--
T Consensus 2 ~m~~~~i~~~l~~il~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fgi 57 (115)
T 1klp_A 2 PVTQEEIIAGIAEIIEEVTGIEP---SEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGV 57 (115)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCT---TTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHHhCcCH---HhCCCCCchhhccCCCHHHHHHHHHHHHHHHCC
Confidence 37888998888888887532233 468888888777899999999999999998753
No 42
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=25.06 E-value=87 Score=23.89 Aligned_cols=42 Identities=31% Similarity=0.385 Sum_probs=31.1
Q ss_pred ChhHHHHHHHHHHhcC---C--------------CCCcCHHHHHHHHHHHhCCCChhhH
Q 017932 3 SDSDLVTRLRDILRNS---D--------------LDTATAGSVRRLLEEDFKVDLSDRK 44 (363)
Q Consensus 3 sd~ei~~~I~~IL~~s---D--------------l~tvT~k~VR~~LE~~~gvDLs~kK 44 (363)
+-++|...|.++|... + ++++..=.|...||+.||+.|....
T Consensus 5 t~~~l~~ii~~~l~~~~~~~~~~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~ 63 (95)
T 1nq4_A 5 TLSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDA 63 (95)
T ss_dssp CHHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTH
T ss_pred cHHHHHHHHHHHHccccccccccCCCCCChhhhCCCHHHHHHHHHHHHHHHCCccCHHH
Confidence 5678888888888753 1 2334456889999999999998543
No 43
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=25.02 E-value=45 Score=24.55 Aligned_cols=53 Identities=13% Similarity=0.005 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcccCChhHhhhhcCCccChhhHHHHHhccCC
Q 017932 129 ARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (363)
Q Consensus 129 sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~d~i~~~~m~k~L~~Hl~ 184 (363)
+|.++...|-.||.+.--.++ ..|..|..|..+.+-|++.+.+|...|..+|.
T Consensus 1 ~~~~i~~~i~~il~~~~~~~~---~~i~~d~~l~~~g~lDSl~~velv~~lE~~fg 53 (80)
T 1dv5_A 1 ADEAIKNGVLDILADLTGSDD---VKKNLDLNLFETGLLDSMGTVQLLLELQSQFG 53 (80)
T ss_dssp CCHHHHHHHHHHHHHHHTSSS---TTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSC
T ss_pred CHHHHHHHHHHHHHHHhCCCc---ccCCCCcchhhccCcChHHHHHHHHHHHHHhC
Confidence 456788888899887653333 34788988887756999999999999999873
No 44
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=24.93 E-value=53 Score=26.01 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=44.2
Q ss_pred CccHHHHHHHHHHHHHHcCCCCCCCCCcccCChhHhhhhcCCccChhhHHHHHhccCC
Q 017932 127 ELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (363)
Q Consensus 127 ~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~d~i~~~~m~k~L~~Hl~ 184 (363)
.|++.++...|..+|...-=.++ ..|..|..|..-+|-|++.+.+|...|..+|.
T Consensus 2 ~m~~~~i~~~l~~il~~~l~~~~---~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fg 56 (115)
T 1klp_A 2 PVTQEEIIAGIAEIIEEVTGIEP---SEITPEKSFVDDLDIDSLSMVEIAVQTEDKYG 56 (115)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCT---TTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHhCcCH---HhCCCCCchhhccCCCHHHHHHHHHHHHHHHC
Confidence 37888998888888887532333 35888888877789999999999999999874
No 45
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=24.71 E-value=30 Score=28.11 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=41.6
Q ss_pred CCCCccHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017932 268 GVSELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (363)
Q Consensus 268 G~~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD~kLk~LFg~d~i~~~~i~klL~~Hl~ 328 (363)
+...| +.+|...|.++|.+.- . |..|..|..-+|-||+.+.+|.-.|...|-
T Consensus 23 ~~~~M-~~ei~~~v~~il~e~l-~-------I~~d~~l~~dLGlDSLd~veLi~~LEe~Fg 74 (113)
T 2cgq_A 23 FQGAM-EEAINATIQRILRTDR-G-------ITANQVLVDDLGFDSLKLFQLITELEDEFD 74 (113)
T ss_dssp ---CH-HHHHHHHHHHHHTCCS-C-------CCTTCBTTTTTCCCHHHHHHHHHHHHHHHT
T ss_pred hcccc-HHHHHHHHHHHHHHHh-C-------CCCCCchhhhcCCCHHHHHHHHHHHHHHhC
Confidence 44467 8999999999998753 1 888888888899999999999999988764
No 46
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=24.20 E-value=1.5e+02 Score=21.26 Aligned_cols=40 Identities=8% Similarity=0.121 Sum_probs=32.5
Q ss_pred cCCCCCcCHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHhh
Q 017932 17 NSDLDTATAGSVRRLLEEDFKVDLSDRKAFVSEQIDLFLQT 57 (363)
Q Consensus 17 ~sDl~tvT~k~VR~~LE~~~gvDLs~kK~~I~~~I~~~l~~ 57 (363)
..|+..+|+..++..|.. +|...+-.|+.+-+.|..|+..
T Consensus 7 ~~~l~klkV~eLK~~L~~-rGL~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 7 GVELHKLKLAELKQECLA-RGLETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp CCCTTTSCHHHHHHHHHH-HTCCCCSCHHHHHHHHHHHHHH
T ss_pred ccCHHHCcHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHhc
Confidence 467888999999988765 7888888888877888888864
No 47
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=23.25 E-value=37 Score=29.61 Aligned_cols=53 Identities=23% Similarity=0.336 Sum_probs=35.9
Q ss_pred cccCCH-HHHhhhCCCCccHHHHHHHHHHHHhhcCCCCCCCCCccccc-hhhhhhhccC
Q 017932 256 LCSLSP-DLQTFVGVSELARTEVVKKLWAYIREKNLQDPKNRRNIICD-EALQVLFRVN 312 (363)
Q Consensus 256 ~~~LS~-~La~flG~~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD-~kLk~LFg~d 312 (363)
.+.++. +||.+||++. ..|.+. ..-.+..|+-.-..+++++.| +.|+.+.+.+
T Consensus 175 ~~~~t~~~iA~~lG~sr---~tvsR~-l~~L~~~g~I~~~~~~i~i~d~~~L~~~a~~~ 229 (250)
T 3e6c_C 175 TMPLSQKSIGEITGVHH---VTVSRV-LASLKRENILDKKKNKIIVYNLGELKHLSEQT 229 (250)
T ss_dssp ECCCCHHHHHHHHTCCH---HHHHHH-HHHHHHTTSEEECSSEEEESCHHHHHHHHTSS
T ss_pred cCCCCHHHHHHHhCCcH---HHHHHH-HHHHHHCCCeEeCCCEEEEecHHHHHHHHccC
Confidence 344554 7999999754 333333 334566788777778888888 7888888653
No 48
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=23.10 E-value=56 Score=24.01 Aligned_cols=52 Identities=10% Similarity=-0.007 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhcCCCCCC-CCCccccchhhhhhhccCccChhhHHHHHHccCCC
Q 017932 277 VVKKLWAYIREKNLQDPK-NRRNIICDEALQVLFRVNSINMFQMNKALTRHIWP 329 (363)
Q Consensus 277 vvk~lW~YIK~nnLqDp~-nkr~I~cD~kLk~LFg~d~i~~~~i~klL~~Hl~p 329 (363)
+...|+++|...=-.++. .-..|-.|..| .-+|.||+.+.+|.-.|..+|--
T Consensus 6 ~~~~l~~il~~~l~~~~~~~~~~i~~~~~l-~dlG~DSL~~vel~~~le~~fgi 58 (86)
T 1af8_A 6 TTDDLRRALVECAGETDGTDLSGDFLDLRF-EDIGYDSLALMETAARLESRYGV 58 (86)
T ss_dssp CHHHHHHHHHTTCCCCSCCCTTTCSSTTST-TTTTCCTTTHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHHHHhCCCcccccccCCCCCCh-hhcCCCHHHHHHHHHHHHHHHCC
Confidence 344555555543222332 11257788888 55799999999999999998753
No 49
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=22.80 E-value=57 Score=25.57 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=45.2
Q ss_pred CCccHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017932 270 SELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (363)
Q Consensus 270 ~~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD~kLk~LFg~d~i~~~~i~klL~~Hl~ 328 (363)
..|-|.++...|+++|...--.++ ..|-.|..| .-+|.||+.+.+|.-.|...|-
T Consensus 11 ~~~~~~~i~~~l~~ila~~l~v~~---~~I~~d~~L-~dLGlDSL~~veL~~~LE~~fg 65 (100)
T 1vku_A 11 HHMERKKLIAKFVEIASEKMGKDL---ETVDEENTF-KELGFDSIDVIDLVMFFEDEFA 65 (100)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCCCC---CSCCTTSBT-TTTTCCHHHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHHHHHHHCCCH---HHCCCCCCH-HHcCCchHHHHHHHHHHHHHHC
Confidence 368899999999999988543333 468899999 6789999999999999988764
No 50
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=22.57 E-value=14 Score=27.75 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=44.5
Q ss_pred CccHHHHHHHHHHHHHHcC-C--CCCCCCCcccCChhHhhhhcCCccChhhHHHHHhccCC
Q 017932 127 ELARTEVVKKLWVYIKENK-L--QDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (363)
Q Consensus 127 ~~sR~~vvk~lW~YIk~nn-L--qDp~nkr~I~cDe~Lk~lF~~d~i~~~~m~k~L~~Hl~ 184 (363)
.|+|.+|...|+++|.+.- + .++ ..|..|..|..-+|-|++.+.+|.-.|..+|.
T Consensus 3 ~m~~~~i~~~v~~~i~~~l~~~~~~~---~~i~~d~~l~~dlglDSl~~vel~~~lE~~fg 60 (88)
T 2l4b_A 3 SMVSEEIKAQVMESVIGCLKLNDEQK---QILSGTTNLAKDFNLDSLDFVDLIMSLEERFS 60 (88)
T ss_dssp SSSCHHHHHHHHHHHHHHHTCCHHHH---HSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCH---hhCCCCCchhhccCCcHHHHHHHHHHHHHHHC
Confidence 5889999999999998863 2 122 34788888877789999999999999999874
No 51
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=21.98 E-value=91 Score=22.48 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCcccCChhHhhhhcCCccChhhHHHHHhccCC
Q 017932 129 ARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (363)
Q Consensus 129 sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~d~i~~~~m~k~L~~Hl~ 184 (363)
||.++...|..+|...=-.++. ..|..|..|. =+|-|++.+.+|...|..+|.
T Consensus 1 ~~~~i~~~l~~i~~~~l~~~~~--~~i~~~~~l~-dlG~DSl~~vel~~~le~~fg 53 (82)
T 2ava_A 1 AKKETIDKVSDIVKEKLALGAD--VVVTADSEFS-KLGADSLDTVEIVMNLEEEFG 53 (82)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSS--SCCCSSCCSC-CCTTCCSCHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHhCCCcc--cccCCCCchh-hcCCCHHHHHHHHHHHHHHHC
Confidence 4667777777777765323332 2588888887 478999999999999999874
No 52
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=21.23 E-value=71 Score=24.99 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=45.9
Q ss_pred CCccHHHHHHHHHHHHHHcCCCCCCCCCcccCChhHhhhhcCCccChhhHHHHHhccCC
Q 017932 126 PELARTEVVKKLWVYIKENKLQDPNNKRKILCDESLQALFGVNSIDMFKMNRALSKHIW 184 (363)
Q Consensus 126 ~~~sR~~vvk~lW~YIk~nnLqDp~nkr~I~cDe~Lk~lF~~d~i~~~~m~k~L~~Hl~ 184 (363)
..|.|.++...|+++|...--.++. .|..|..| .-+|-|++.+.+|...|...|.
T Consensus 11 ~~~~~~~i~~~l~~ila~~l~v~~~---~I~~d~~L-~dLGlDSL~~veL~~~LE~~fg 65 (100)
T 1vku_A 11 HHMERKKLIAKFVEIASEKMGKDLE---TVDEENTF-KELGFDSIDVIDLVMFFEDEFA 65 (100)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCCCCC---SCCTTSBT-TTTTCCHHHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHHHHHHHCCCHH---HCCCCCCH-HHcCCchHHHHHHHHHHHHHHC
Confidence 4688999999999999886534443 58899999 7789999999999999988763
No 53
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=21.08 E-value=1.1e+02 Score=26.38 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=37.5
Q ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHh
Q 017932 10 RLRDILRNSDLDTATAGSVRRLLEEDFKVDLSDRKAFVSEQIDLFLQ 56 (363)
Q Consensus 10 ~I~~IL~~sDl~tvT~k~VR~~LE~~~gvDLs~kK~~I~~~I~~~l~ 56 (363)
.|.+....-.|...|+..+|..|... |+..+.+|+.+=+.|..||+
T Consensus 51 ~i~~l~~~g~L~kltV~eLK~~l~~~-gL~~~GkKadLI~Ri~~~l~ 96 (151)
T 1jjr_A 51 ELKTHISKGTLGKFTVPMLKEACRAY-GLKSGLKKQELLEALTKHFQ 96 (151)
T ss_dssp HHHHHHHHTCTTSSCHHHHHHHHHHH-TCCCCSSSHHHHHHHHHTTC
T ss_pred HHHHHHHcCcHHhccHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHh
Confidence 34456688999999999999999886 88888888877777877775
No 54
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=20.48 E-value=48 Score=26.14 Aligned_cols=56 Identities=7% Similarity=-0.028 Sum_probs=39.3
Q ss_pred CccHHHHHHHHHHHHhhcCCCCCCCCCccccchhhhhhhccCccChhhHHHHHHccCC
Q 017932 271 ELARTEVVKKLWAYIREKNLQDPKNRRNIICDEALQVLFRVNSINMFQMNKALTRHIW 328 (363)
Q Consensus 271 ~~sR~~vvk~lW~YIK~nnLqDp~nkr~I~cD~kLk~LFg~d~i~~~~i~klL~~Hl~ 328 (363)
..++.++...|.++|...--.+ .+...|-.|..|.. +|-||+.+.+|.-.|...|-
T Consensus 17 ~~~~~~i~~~i~~il~~~l~~~-v~~~~i~~d~~l~d-lGlDSL~~veLv~~lE~~fg 72 (105)
T 2jq4_A 17 LYFQGHMNATIREILAKFGQLP-TPVDTIADEADLYA-AGLSSFASVQLMLGIEEAFD 72 (105)
T ss_dssp ------CHHHHHHHHHHTSCCS-SCGGGCCTTSCGGG-GTCCHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHhccC-CCcccCCCCCCHhh-cCCCHHHHHHHHHHHHHHHC
Confidence 5677888888999998853112 23467889999985 89999999999999988764
No 55
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=20.28 E-value=1.4e+02 Score=24.43 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=37.8
Q ss_pred ChhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhCCCChhhHHHHHHHH
Q 017932 3 SDSDLVTRLRDILRNSDLDTATAGSVRRLLEEDFKVDLSDRKAFVSEQI 51 (363)
Q Consensus 3 sd~ei~~~I~~IL~~sDl~tvT~k~VR~~LE~~~gvDLs~kK~~I~~~I 51 (363)
|++++-.+-.+.....|++- -.||+.|...||.||-+-=+.|.+..
T Consensus 7 t~eeF~aRy~~~F~~~~iD~---~e~rrglN~l~~~DlVP~P~ii~aaL 52 (109)
T 1v54_E 7 TDEEFDARWVTYFNKPDIDA---WELRKGMNTLVGYDLVPEPKIIDAAL 52 (109)
T ss_dssp CHHHHHHHHHHHHTCTTCCH---HHHHHHHHHHTTSSBCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCcCccH---HHHHHHHHHHhccccCCCcHHHHHHH
Confidence 78888888888888888774 55999999999999997766665544
Done!