BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017934
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 251 bits (641), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 130/337 (38%), Positives = 205/337 (60%), Gaps = 9/337 (2%)
Query: 11 IVRVQALSESGIKSIPERYIKPS--LQRPNSVKHGDRDFDDSQINIPLIDLQSIYSNDES 68
+ RV++L++SGI SIP+ YI+P L+ N V ++ D Q+ P IDL++I S+DE
Sbjct: 4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQV--PTIDLKNIESDDEK 61
Query: 69 VRNETLSCISNACRDWAFFQVVNHGVSPELMKQTREMWREFFNLPLELKQEYANSPTT-- 126
+R + + A DW ++NHG+ +LM++ ++ EFF+L +E K++YAN T
Sbjct: 62 IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 121
Query: 127 YEGYGSRLGVEKGAKLDWSDYFFLHFMPHSLRNPNKWPSLPPSCRELVSEYGENLVKLCG 186
+GYGS+L +L+W DYFF P R+ + WP P E SEY + L L
Sbjct: 122 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 181
Query: 187 VLMKVLSINLGLQEDQFQNAFGG-EEIGACLRVNFYPKCPQPDLTLGLSPHSDPGGMTLL 245
+ K LS+ LGL+ D+ + GG EE+ +++N+YPKCPQP+L LG+ H+D +T +
Sbjct: 182 KVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI 241
Query: 246 LPDENVAGLQVRRGDNWITVKPVPNAFIVNIGDQIQVLSNAIYKSVEHRVIVNSEKDRVS 305
L + V GLQ+ W+T K VP++ +++IGD +++LSN YKS+ HR +VN EK R+S
Sbjct: 242 LHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
Query: 306 LAFFYN-PKSDLLIEPMKEFVTRNRPALYPPMTYDEY 341
A F PK ++++P+ E V+ PA +PP T+ ++
Sbjct: 301 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQH 337
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 251 bits (640), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 130/337 (38%), Positives = 205/337 (60%), Gaps = 9/337 (2%)
Query: 11 IVRVQALSESGIKSIPERYIKPS--LQRPNSVKHGDRDFDDSQINIPLIDLQSIYSNDES 68
+ RV++L++SGI SIP+ YI+P L+ N V ++ D Q+ P IDL++I S+DE
Sbjct: 3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQV--PTIDLKNIESDDEK 60
Query: 69 VRNETLSCISNACRDWAFFQVVNHGVSPELMKQTREMWREFFNLPLELKQEYANSPTT-- 126
+R + + A DW ++NHG+ +LM++ ++ EFF+L +E K++YAN T
Sbjct: 61 IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 120
Query: 127 YEGYGSRLGVEKGAKLDWSDYFFLHFMPHSLRNPNKWPSLPPSCRELVSEYGENLVKLCG 186
+GYGS+L +L+W DYFF P R+ + WP P E SEY + L L
Sbjct: 121 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 180
Query: 187 VLMKVLSINLGLQEDQFQNAFGG-EEIGACLRVNFYPKCPQPDLTLGLSPHSDPGGMTLL 245
+ K LS+ LGL+ D+ + GG EE+ +++N+YPKCPQP+L LG+ H+D +T +
Sbjct: 181 KVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI 240
Query: 246 LPDENVAGLQVRRGDNWITVKPVPNAFIVNIGDQIQVLSNAIYKSVEHRVIVNSEKDRVS 305
L + V GLQ+ W+T K VP++ +++IGD +++LSN YKS+ HR +VN EK R+S
Sbjct: 241 LHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 299
Query: 306 LAFFYN-PKSDLLIEPMKEFVTRNRPALYPPMTYDEY 341
A F PK ++++P+ E V+ PA +PP T+ ++
Sbjct: 300 WAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQH 336
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 202/337 (59%), Gaps = 9/337 (2%)
Query: 11 IVRVQALSESGIKSIPERYIKPS--LQRPNSVKHGDRDFDDSQINIPLIDLQSIYSNDES 68
+ RV++L++SGI SIP+ YI+P L+ N V ++ D Q+ P IDL++I S+DE
Sbjct: 4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQV--PTIDLKNIESDDEK 61
Query: 69 VRNETLSCISNACRDWAFFQVVNHGVSPELMKQTREMWREFFNLPLELKQEYANSPTT-- 126
+R + + A DW ++NHG+ +L ++ ++ EFF+L +E K++YAN T
Sbjct: 62 IRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGK 121
Query: 127 YEGYGSRLGVEKGAKLDWSDYFFLHFMPHSLRNPNKWPSLPPSCRELVSEYGENLVKLCG 186
+GYGS+L +L+W DYFF P R+ + WP P E SEY + L L
Sbjct: 122 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLAT 181
Query: 187 VLMKVLSINLGLQEDQFQNAFGG-EEIGACLRVNFYPKCPQPDLTLGLSPHSDPGGMTLL 245
+ K LS+ LGL+ D+ + GG EE+ ++N+YPKCPQP+L LG+ H+D +T +
Sbjct: 182 KVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFI 241
Query: 246 LPDENVAGLQVRRGDNWITVKPVPNAFIVNIGDQIQVLSNAIYKSVEHRVIVNSEKDRVS 305
L + V GLQ+ W+T K VP++ + +IGD +++LSN YKS+ HR +VN EK R+S
Sbjct: 242 LHN-XVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRIS 300
Query: 306 LAFFYN-PKSDLLIEPMKEFVTRNRPALYPPMTYDEY 341
A F PK ++++P+ E V+ PA +PP T+ ++
Sbjct: 301 WAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQH 337
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 159/301 (52%), Gaps = 15/301 (4%)
Query: 53 NIPLIDLQSIYSNDESVRNETLSCISNACRDWAFFQVVNHGVSPELMKQTREMWREFFNL 112
N P+I L + + R T I +AC +W FF++VNHG+ E+ + + +
Sbjct: 3 NFPIISLDKVNGVE---RAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKK 59
Query: 113 PLELKQEYANSPTTYEGYGSRLGVEKGAKLDWSDYFFLHFMPHSLRNPNKWPSLPPSCRE 172
E + + + EG + + DW FFL +P + N ++ P L RE
Sbjct: 60 CXEQRFKELVASKALEGVQAEV-----TDXDWESTFFLKHLP--ISNISEVPDLDEEYRE 112
Query: 173 LVSEYGENLVKLCGVLMKVLSINLGLQEDQFQNAF-GGEEIGACLRVNFYPKCPQPDLTL 231
+ ++ + L KL L+ +L NLGL++ +NAF G + +V+ YP CP+PDL
Sbjct: 113 VXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIK 172
Query: 232 GLSPHSDPGGMTLLLPDENVAGLQVRRGDNWITVKPVPNAFIVNIGDQIQVLSNAIYKSV 291
GL H+D GG+ LL D+ V+GLQ+ + WI V P ++ +VN+GDQ++V++N YKSV
Sbjct: 173 GLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSV 232
Query: 292 EHRVIVNSEKDRVSLAFFYNPKSDLLIEPMKEFVTR---NRPALYPPMTYDEY-RLYIRT 347
HRVI + R SLA FYNP SD +I P V + +YP +D+Y +LY
Sbjct: 233 XHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGL 292
Query: 348 K 348
K
Sbjct: 293 K 293
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 132/296 (44%), Gaps = 22/296 (7%)
Query: 61 SIYSNDESVRNETLSCISNACRDWAFFQVVNHGVSPELMKQTREMWREFFNLPLELKQEY 120
S+Y+ D + + L + + F + ++ + + + + FF LP+E K++Y
Sbjct: 13 SLYAKDFTRFAQELGA---SFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQY 69
Query: 121 ANSPTTYEGYGSRLGVEKGAKLDWSDYF-FLHF---MP--HSLRN---PNKWPSLPPSCR 171
A GY GVE D D F H +P H R N WP+ P+ +
Sbjct: 70 AGVKGGARGY-IPFGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFK 128
Query: 172 ELVSEYGENLVKLCGVLMKVLSINLGLQEDQFQNAFGGEEIGACLRVNFYPKCPQPDLTL 231
VS +L G +++ ++ L L+ D F+ ++ + LR+ YP P+ +
Sbjct: 129 HDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTV--QDGNSVLRLLHYPPIPKDATGV 186
Query: 232 GLSPHSDPGGMTLLLPDENVAGLQV-RRGDNWITVKPVPNAFIVNIGDQIQVLSNAIYKS 290
H D +TLLL E GL+V R W+ + P P ++NIGD ++ L+N + S
Sbjct: 187 RAGAHGDINTITLLLGAEE-GGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPS 245
Query: 291 VEHRVI----VNSEKDRVSLAFFYNPKSDLLIEPMKEFVTRNRPALYP-PMTYDEY 341
HRV+ R S FF + SD I+ ++ VT P YP +T DE+
Sbjct: 246 TVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEF 301
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 131/301 (43%), Gaps = 37/301 (12%)
Query: 50 SQINIPLIDLQSIYSNDESVRNETLSCISNACRDWAFFQVVNHGVSPE-LMKQTREMWRE 108
S+ N+P ID+ ++ +D++ + I A RD FF VNHG++ + L ++T+E
Sbjct: 5 SKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKE---- 60
Query: 109 FFNLPLELKQEYANSPTTYEG-------YGSRLGVEKGAKLDWSDYFFLHFMPHSLR--- 158
F++ + ++++ + Y G L + ++ Y +F P R
Sbjct: 61 -FHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQA 119
Query: 159 -----NPNKWP--SLPPSCRELVSEYGENLVKLCGVLMKVLSINLGLQEDQFQNAFGGEE 211
N WP + P ++ +Y ++ L L+K ++ LG +E+ F F ++
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179
Query: 212 IGACLRVNFYP----------KCPQPDLTLGLSPHSDPGGMTLLLPDENVAGLQVRRGDN 261
A + + YP K L H D +T+L NV LQV
Sbjct: 180 TLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLY-QSNVQNLQVETAAG 238
Query: 262 WITVKPVPNAFIVNIGDQIQVLSNAIYKSVEHRV-IVNSEKDRVSLAFFYNPKSDLLIEP 320
+ ++ +++N G + L+N YK+ HRV VN+E R SL FF N D +I+P
Sbjct: 239 YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE--RQSLPFFVNLGYDSVIDP 296
Query: 321 M 321
Sbjct: 297 F 297
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 131/301 (43%), Gaps = 37/301 (12%)
Query: 50 SQINIPLIDLQSIYSNDESVRNETLSCISNACRDWAFFQVVNHGVSPE-LMKQTREMWRE 108
S+ N+P ID+ ++ +D++ + I A RD FF VNHG++ + L ++T+E
Sbjct: 5 SKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKE---- 60
Query: 109 FFNLPLELKQEYANSPTTYEG-------YGSRLGVEKGAKLDWSDYFFLHFMPHSLR--- 158
F++ + ++++ + Y G L + ++ Y +F P R
Sbjct: 61 -FHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQA 119
Query: 159 -----NPNKWP--SLPPSCRELVSEYGENLVKLCGVLMKVLSINLGLQEDQFQNAFGGEE 211
N WP + P ++ +Y ++ L L+K ++ LG +E+ F F ++
Sbjct: 120 KTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDD 179
Query: 212 IGACLRVNFYP----------KCPQPDLTLGLSPHSDPGGMTLLLPDENVAGLQVRRGDN 261
A + + YP K L H D +T+L NV LQV
Sbjct: 180 TLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLY-QSNVQNLQVETAAG 238
Query: 262 WITVKPVPNAFIVNIGDQIQVLSNAIYKSVEHRVI-VNSEKDRVSLAFFYNPKSDLLIEP 320
+ ++ +++N G + L+N YK+ HRV VN+E R SL FF N D +I+P
Sbjct: 239 YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE--RQSLPFFVNLGYDSVIDP 296
Query: 321 M 321
Sbjct: 297 F 297
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 33/256 (12%)
Query: 80 ACRDWAFFQVVNHGVSPELMKQTREMWREFFNLPLELKQEYANSPTTYEGY--GSRLGVE 137
+ R+ F + NH + EL+++ W+ FFN E K E+ + T++G+ S
Sbjct: 21 SLRETGFGVLSNHPIDKELVERIYTEWQAFFNS--EAKNEFXFNRETHDGFFPASISETA 78
Query: 138 KGAKL-DWSDYFFLHFMPHSLRNPNKWPSLPPSCRELVSEYGENLVKLCGVLMKVLSINL 196
KG + D +Y+ H P W +P S R + Y E L L++ +
Sbjct: 79 KGHTVKDIKEYY--HVYP--------WGRIPDSLRANILAYYEKANTLASELLEWIET-- 126
Query: 197 GLQEDQFQNAFG-------GEEIGACLRVNFYP--KCPQPDLTLGLSPHSDPGGMTLLLP 247
D+ + F LR+ YP + + + H D +T+L P
Sbjct: 127 -YSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVL-P 184
Query: 248 DENVAGLQVRRGD-NWITVKPVPNAFIVNIGDQIQVLSNAIYKSVEHRVI----VNSEKD 302
N GLQV+ D +W+ V I+NIGD +Q S+ + S HRVI + K
Sbjct: 185 TANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKS 244
Query: 303 RVSLAFFYNPKSDLLI 318
R+SL F +P +++
Sbjct: 245 RISLPLFLHPHPSVVL 260
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 113/287 (39%), Gaps = 35/287 (12%)
Query: 48 DDSQINIPLIDLQSIYSNDESVRNETLSCISNACRDWAFFQVVNHGVSPELMKQTREMWR 107
D + L +LQ DE R C+ RD F + + G++ +K +++
Sbjct: 22 DTTVPTFSLAELQQGLHQDEFRR-----CL----RDKGLFYLTDCGLTDTELKSAKDLVI 72
Query: 108 EFFNLPLELKQEYANS--PTTYEGYGSRLGVEKGAKL----DWSDYFFLHFMPHSLRNPN 161
+FF E ++ S PT G+ + L E A++ +SDY + M + N
Sbjct: 73 DFFEHGSEAEKRAVTSPVPTMRRGF-TGLESESTAQITNTGSYSDYSMCYSMGTA---DN 128
Query: 162 KWPSLPPSCRELVSEYGENLVKLCGVLMKVLSINLGLQEDQFQNAFGGEEIGACLRVNFY 221
+PS + ++Y + + + + G + D AF E LR ++
Sbjct: 129 LFPS--GDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCE--PLLRFRYF 184
Query: 222 PKCPQ----PDLTLGLSPHSDPGGMTLL--LPDEN-VAGLQVRRGDNWITVKPVPNAFIV 274
P+ P+ + L ++PH D +TL+ P N LQ G + + P+A +V
Sbjct: 185 PQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLV 244
Query: 275 NIGDQIQVLSNAIYKSVEHRVIVN-----SEKDRVSLAFFYNPKSDL 316
G +++ K+ H V + R S FF P +D
Sbjct: 245 FCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNADF 291
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 113/287 (39%), Gaps = 35/287 (12%)
Query: 48 DDSQINIPLIDLQSIYSNDESVRNETLSCISNACRDWAFFQVVNHGVSPELMKQTREMWR 107
D + L +LQ DE R C+ RD F + + G++ +K +++
Sbjct: 2 DTTVPTFSLAELQQGLHQDEFRR-----CL----RDKGLFYLTDCGLTDTELKSAKDLVI 52
Query: 108 EFFNLPLELKQEYANS--PTTYEGYGSRLGVEKGAKL----DWSDYFFLHFMPHSLRNPN 161
+FF E ++ S PT G+ + L E A++ +SDY + M + N
Sbjct: 53 DFFEHGSEAEKRAVTSPVPTMRRGF-TGLESESTAQITNTGSYSDYSMCYSMGTA---DN 108
Query: 162 KWPSLPPSCRELVSEYGENLVKLCGVLMKVLSINLGLQEDQFQNAFGGEEIGACLRVNFY 221
+PS + ++Y + + + + G + D AF E LR ++
Sbjct: 109 LFPS--GDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCE--PLLRFRYF 164
Query: 222 PKCPQ----PDLTLGLSPHSDPGGMTLL--LPDEN-VAGLQVRRGDNWITVKPVPNAFIV 274
P+ P+ + L ++PH D +TL+ P N LQ G + + P+A +V
Sbjct: 165 PQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLV 224
Query: 275 NIGDQIQVLSNAIYKSVEHRVIVN-----SEKDRVSLAFFYNPKSDL 316
G +++ K+ H V + R S FF P +D
Sbjct: 225 FCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNADF 271
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 113/287 (39%), Gaps = 35/287 (12%)
Query: 48 DDSQINIPLIDLQSIYSNDESVRNETLSCISNACRDWAFFQVVNHGVSPELMKQTREMWR 107
D + L +LQ DE R C+ RD F + + G++ +K +++
Sbjct: 2 DTTVPTFSLAELQQGLHQDEFRR-----CL----RDKGLFYLTDCGLTDTELKSAKDIVI 52
Query: 108 EFFNLPLELKQEYANS--PTTYEGYGSRLGVEKGAKL----DWSDYFFLHFMPHSLRNPN 161
+FF E ++ S PT G+ + L E A++ +SDY + M + N
Sbjct: 53 DFFEHGSEAEKRAVTSPVPTMRRGF-TGLESESTAQITNTGSYSDYSMCYSMGTA---DN 108
Query: 162 KWPSLPPSCRELVSEYGENLVKLCGVLMKVLSINLGLQEDQFQNAFGGEEIGACLRVNFY 221
+PS + ++Y + + + + G + D AF E LR ++
Sbjct: 109 LFPS--GDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCE--PLLRFRYF 164
Query: 222 PKCPQ----PDLTLGLSPHSDPGGMTLL--LPDEN-VAGLQVRRGDNWITVKPVPNAFIV 274
P+ P+ + L ++PH D +TL+ P N LQ G + + P+A +V
Sbjct: 165 PQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLV 224
Query: 275 NIGDQIQVLSNAIYKSVEHRVIVN-----SEKDRVSLAFFYNPKSDL 316
G +++ K+ H V + R S FF P +D
Sbjct: 225 FCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNADF 271
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 113/287 (39%), Gaps = 35/287 (12%)
Query: 48 DDSQINIPLIDLQSIYSNDESVRNETLSCISNACRDWAFFQVVNHGVSPELMKQTREMWR 107
D + L +LQ DE R C+ RD F + + G++ +K +++
Sbjct: 2 DTTVPTFSLAELQQGLHQDEFRR-----CL----RDKGLFYLTDCGLTDTELKSAKDIVI 52
Query: 108 EFFNLPLELKQEYANS--PTTYEGYGSRLGVEKGAKL----DWSDYFFLHFMPHSLRNPN 161
+FF E ++ S PT G+ + L E A++ +SDY + M + N
Sbjct: 53 DFFEHGSEAEKRAVTSPVPTMRRGF-TGLESESTAQITNTGSYSDYSMCYSMGTA---DN 108
Query: 162 KWPSLPPSCRELVSEYGENLVKLCGVLMKVLSINLGLQEDQFQNAFGGEEIGACLRVNFY 221
+PS + ++Y + + + + G + D AF E LR ++
Sbjct: 109 LFPS--GDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCE--PLLRFRYF 164
Query: 222 PKCPQ----PDLTLGLSPHSDPGGMTLL--LPDEN-VAGLQVRRGDNWITVKPVPNAFIV 274
P+ P+ + L ++PH D +TL+ P N LQ G + + P+A +V
Sbjct: 165 PQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLV 224
Query: 275 NIGDQIQVLSNAIYKSVEHRVIVN-----SEKDRVSLAFFYNPKSDL 316
G +++ K+ H V + R S FF P +D
Sbjct: 225 FCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNADF 271
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 113/287 (39%), Gaps = 35/287 (12%)
Query: 48 DDSQINIPLIDLQSIYSNDESVRNETLSCISNACRDWAFFQVVNHGVSPELMKQTREMWR 107
D + L +LQ DE R C+ RD F + + G++ +K +++
Sbjct: 2 DTTVPTFSLAELQQGLHQDEFRR-----CL----RDKGLFYLTDCGLTDTELKSAKDIVI 52
Query: 108 EFFNLPLELKQEYANS--PTTYEGYGSRLGVEKGAKL----DWSDYFFLHFMPHSLRNPN 161
+FF E ++ S PT G+ + L E A++ +SDY + M + N
Sbjct: 53 DFFEHGSEAEKRAVTSPVPTMRRGF-TGLESESTAQITNTGSYSDYSMCYSMGTA---DN 108
Query: 162 KWPSLPPSCRELVSEYGENLVKLCGVLMKVLSINLGLQEDQFQNAFGGEEIGACLRVNFY 221
+PS + ++Y + + + + G + D AF E LR ++
Sbjct: 109 LFPS--GDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCE--PLLRFRYF 164
Query: 222 PKCPQ----PDLTLGLSPHSDPGGMTLL--LPDEN-VAGLQVRRGDNWITVKPVPNAFIV 274
P+ P+ + L ++PH D +TL+ P N LQ G + + P+A +V
Sbjct: 165 PQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLV 224
Query: 275 NIGDQIQVLSNAIYKSVEHRVIVN-----SEKDRVSLAFFYNPKSDL 316
G +++ K+ H V + + S FF P +D
Sbjct: 225 FCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSQTSSVFFLRPNADF 271
>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|B Chain B, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|C Chain C, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|D Chain D, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|E Chain E, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|F Chain F, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|G Chain G, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|H Chain H, Crystal Structure Of The Proprotein Convertase Furin
Length = 471
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 11/101 (10%)
Query: 252 AGLQVRRGDNWITVKPVPNAFI------VNIGDQIQVLSNAIYKSVEHRVIVNSEKDRVS 305
AG V NW TV P + +IG +++V E I E +
Sbjct: 324 AGAMVALAQNWTTVAPQRKCIVEILVEPKDIGKRLEVRKAVTACLGEPNHITRLEHVQAR 383
Query: 306 LAFFYNPKSDLLIEPMKEFVTRN-----RPALYPPMTYDEY 341
L YN + DL I + TR+ RP Y ++++
Sbjct: 384 LTLSYNRRGDLAIHLISPMGTRSTLLAARPHDYSADGFNDW 424
>pdb|2PQT|A Chain A, Human N-Acetyltransferase 1
Length = 295
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 11 IVRVQALSESGIKSIPERYIKPSLQRPNSVKHGDRDF 47
++ + LSE I+ + + SLQR KHGDR F
Sbjct: 257 LIEFKTLSEEEIEKVLKNIFNISLQRKLVPKHGDRFF 293
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 114 LELKQEYANSPTTYEGYGSRLGVEKGAKLDWSDYFFLHFMPHSLRNP----NKWPSLPPS 169
L L++ Y ++ T Y G G R +EK K + + + F H L NP +P +P +
Sbjct: 30 LGLEEYYPDNVTKYIGGGVRALLEKVLKDKFREEYVEVFRKHYLENPVVYTKPYPEIPYT 89
Query: 170 CRELVSE 176
L S+
Sbjct: 90 LEALKSK 96
>pdb|1T93|A Chain A, Evidence For Multiple Substrate Recognition And Molecular
Mechanism Of C-C Reaction By Cytochrome P450 Cyp158a2
From Streptomyces Coelicolor A3(2)
Length = 406
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 217 RVNFYPKCPQPDLTLGLSPHSDPGGMTLLLPDE 249
R++F + P P ++ G PH PGGM L E
Sbjct: 333 RIDFE-RSPNPHVSFGFGPHYCPGGMLARLESE 364
>pdb|3TZO|A Chain A, The Role Of I87 Of Cyp158a2 In Oxidative Coupling Reaction
pdb|3TZO|B Chain B, The Role Of I87 Of Cyp158a2 In Oxidative Coupling Reaction
Length = 410
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 217 RVNFYPKCPQPDLTLGLSPHSDPGGMTLLLPDE 249
R++F + P P ++ G PH PGGM L E
Sbjct: 333 RIDFE-RSPNPHVSFGFGPHYCPGGMLARLESE 364
>pdb|2D09|A Chain A, A Role For Active Site Water Molecules And Hydroxyl Groups
Of Substrate For Oxygen Activation In Cytochrome P450
158a2
Length = 407
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 217 RVNFYPKCPQPDLTLGLSPHSDPGGMTLLLPDE 249
R++F + P P ++ G PH PGGM L E
Sbjct: 333 RIDFE-RSPNPHVSFGFGPHYCPGGMLARLESE 364
>pdb|1S1F|A Chain A, Crystal Structure Of Streptomyces Coelicolor A3(2)
Cyp158a2 From Antibiotic Biosynthetic Pathways
Length = 406
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 217 RVNFYPKCPQPDLTLGLSPHSDPGGMTLLLPDE 249
R++F + P P ++ G PH PGGM L E
Sbjct: 333 RIDFE-RSPNPHVSFGFGPHYCPGGMLARLESE 364
>pdb|3TNK|A Chain A, Crystal Structure Of Mutant I87r In Cyp158a2
pdb|3TNK|B Chain B, Crystal Structure Of Mutant I87r In Cyp158a2
Length = 407
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 217 RVNFYPKCPQPDLTLGLSPHSDPGGMTLLLPDE 249
R++F + P P ++ G PH PGGM L E
Sbjct: 333 RIDFE-RSPNPHVSFGFGPHYCPGGMLARLESE 364
>pdb|2IJA|A Chain A, Human N-Acetyltransferase 1 F125s Mutant
Length = 295
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 11 IVRVQALSESGIKSIPERYIKPSLQRPNSVKHGDRDF 47
++ + LSE I+ + + SLQR KHGDR F
Sbjct: 257 LIEFKTLSEEEIEKVLKNIFNISLQRKLVPKHGDRFF 293
>pdb|2D0E|A Chain A, Substrate Assited In Oxygen Activation In Cytochrome P450
158a2
Length = 407
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 217 RVNFYPKCPQPDLTLGLSPHSDPGGMTLLLPDE 249
R++F + P P ++ G PH PGGM L E
Sbjct: 333 RIDFE-RSPNPHVSFGFGPHYCPGGMLARLESE 364
>pdb|1SE6|A Chain A, Crystal Structure Of Streptomyces Coelicolor A3(2)
Cyp158a2 From Antibiotic Biosynthetic Pathways
pdb|1SE6|B Chain B, Crystal Structure Of Streptomyces Coelicolor A3(2)
Cyp158a2 From Antibiotic Biosynthetic Pathways
Length = 406
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 217 RVNFYPKCPQPDLTLGLSPHSDPGGMTLLLPDE 249
R++F + P P ++ G PH PGGM L E
Sbjct: 333 RIDFE-RSPNPHVSFGFGPHYCPGGMLARLESE 364
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 114 LELKQEYANSPTTYEGYGSRLGVEKGAKLDWSDYFFLHFMPHSLRNP----NKWPSLPPS 169
L L++ Y ++ T Y G G R +EK K + + + F H L NP +P +P +
Sbjct: 32 LGLEEYYPDNVTKYIGGGVRALLEKVLKDKFREEYVEVFRKHYLENPVVYTKPYPEIPYT 91
Query: 170 CRELVSE 176
L S+
Sbjct: 92 LEALKSK 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,615,507
Number of Sequences: 62578
Number of extensions: 501626
Number of successful extensions: 1001
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 959
Number of HSP's gapped (non-prelim): 27
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)