Query 017937
Match_columns 363
No_of_seqs 583 out of 3467
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 04:44:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1159 Era GTPase [General fu 100.0 2.4E-53 5.3E-58 374.5 27.0 249 112-363 3-252 (298)
2 TIGR00436 era GTP-binding prot 100.0 3.6E-47 7.8E-52 346.7 29.0 244 116-363 1-244 (270)
3 PRK15494 era GTPase Era; Provi 100.0 4.1E-47 8.9E-52 355.6 28.5 246 114-363 51-296 (339)
4 PRK00089 era GTPase Era; Revie 100.0 3.2E-44 6.9E-49 331.6 30.2 246 113-363 3-249 (292)
5 KOG1423 Ras-like GTPase ERA [C 100.0 8.6E-43 1.9E-47 305.2 24.4 250 113-363 70-351 (379)
6 COG1160 Predicted GTPases [Gen 100.0 2.8E-33 6E-38 260.5 16.9 226 116-361 4-236 (444)
7 PRK12298 obgE GTPase CgtA; Rev 100.0 2E-27 4.3E-32 225.4 19.6 191 117-312 161-362 (390)
8 COG0486 ThdF Predicted GTPase 99.9 4.1E-27 8.9E-32 220.0 14.5 210 61-285 167-378 (454)
9 PRK03003 GTP-binding protein D 99.9 2.7E-26 6E-31 224.7 17.2 223 116-360 39-268 (472)
10 TIGR03594 GTPase_EngA ribosome 99.9 9.9E-26 2.1E-30 219.3 15.7 223 117-361 1-230 (429)
11 PRK09518 bifunctional cytidyla 99.9 3.1E-25 6.8E-30 227.0 17.7 226 115-360 275-507 (712)
12 PRK00093 GTP-binding protein D 99.9 8.5E-25 1.8E-29 213.1 17.2 223 116-361 2-231 (435)
13 PF02421 FeoB_N: Ferrous iron 99.9 3.3E-25 7.1E-30 182.8 9.7 155 117-278 2-156 (156)
14 PLN03071 GTP-binding nuclear p 99.9 3.1E-23 6.7E-28 183.3 19.8 194 113-318 11-215 (219)
15 KOG0092 GTPase Rab5/YPT51 and 99.9 6.4E-24 1.4E-28 175.3 12.7 164 114-287 4-171 (200)
16 cd01897 NOG NOG1 is a nucleola 99.9 3E-23 6.6E-28 175.6 17.2 164 116-282 1-167 (168)
17 cd04163 Era Era subfamily. Er 99.9 7.4E-23 1.6E-27 172.1 19.4 166 114-282 2-168 (168)
18 cd01894 EngA1 EngA1 subfamily. 99.9 3.8E-23 8.3E-28 172.6 17.0 157 119-282 1-157 (157)
19 PRK05291 trmE tRNA modificatio 99.9 7.8E-24 1.7E-28 205.4 14.3 157 115-284 215-371 (449)
20 COG1160 Predicted GTPases [Gen 99.9 6.8E-23 1.5E-27 191.3 19.5 208 114-333 177-391 (444)
21 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.8E-23 3.9E-28 201.8 13.4 159 114-283 202-360 (442)
22 cd01898 Obg Obg subfamily. Th 99.9 6.3E-23 1.4E-27 174.0 14.5 163 117-282 2-170 (170)
23 cd04120 Rab12 Rab12 subfamily. 99.9 1.7E-22 3.8E-27 175.9 17.3 158 117-284 2-164 (202)
24 cd04112 Rab26 Rab26 subfamily. 99.9 1.4E-22 3E-27 175.6 15.6 165 117-291 2-171 (191)
25 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 2.5E-22 5.3E-27 165.9 16.2 163 112-285 19-187 (221)
26 TIGR03156 GTP_HflX GTP-binding 99.9 2.4E-22 5.1E-27 188.8 18.1 159 116-282 190-351 (351)
27 cd04149 Arf6 Arf6 subfamily. 99.9 2.8E-22 6E-27 170.1 16.3 154 114-280 8-167 (168)
28 cd04133 Rop_like Rop subfamily 99.9 2E-22 4.4E-27 171.8 15.2 155 117-283 3-173 (176)
29 cd04158 ARD1 ARD1 subfamily. 99.9 3.1E-22 6.7E-27 170.0 16.0 159 117-288 1-166 (169)
30 cd01895 EngA2 EngA2 subfamily. 99.9 8.5E-22 1.8E-26 167.0 18.6 165 115-281 2-173 (174)
31 cd01864 Rab19 Rab19 subfamily. 99.9 5.5E-22 1.2E-26 167.6 17.1 158 115-282 3-165 (165)
32 cd01875 RhoG RhoG subfamily. 99.9 3.3E-22 7.2E-27 173.2 15.9 159 115-284 3-178 (191)
33 cd04154 Arl2 Arl2 subfamily. 99.9 5E-22 1.1E-26 169.3 16.8 154 114-280 13-172 (173)
34 cd01874 Cdc42 Cdc42 subfamily. 99.9 3.8E-22 8.3E-27 170.4 16.0 155 116-281 2-173 (175)
35 cd01861 Rab6 Rab6 subfamily. 99.9 4.2E-22 9.2E-27 167.3 16.0 155 117-282 2-161 (161)
36 cd04142 RRP22 RRP22 subfamily. 99.9 4.4E-22 9.6E-27 173.2 16.5 166 117-284 2-175 (198)
37 KOG0084 GTPase Rab1/YPT1, smal 99.9 2.7E-22 5.8E-27 166.3 14.3 162 114-284 8-173 (205)
38 cd04122 Rab14 Rab14 subfamily. 99.9 3.6E-22 7.8E-27 168.9 15.2 155 116-283 3-164 (166)
39 cd04138 H_N_K_Ras_like H-Ras/N 99.9 6.2E-22 1.4E-26 166.1 16.4 155 116-282 2-161 (162)
40 cd04136 Rap_like Rap-like subf 99.9 4.4E-22 9.6E-27 167.5 15.4 155 116-282 2-162 (163)
41 cd04140 ARHI_like ARHI subfami 99.9 5E-22 1.1E-26 167.9 15.7 155 116-281 2-163 (165)
42 TIGR03594 GTPase_EngA ribosome 99.9 8.6E-22 1.9E-26 191.7 19.6 169 114-284 171-345 (429)
43 cd01867 Rab8_Rab10_Rab13_like 99.9 5E-22 1.1E-26 168.2 15.7 157 115-283 3-165 (167)
44 cd01865 Rab3 Rab3 subfamily. 99.9 5E-22 1.1E-26 167.9 15.5 157 116-283 2-163 (165)
45 cd04171 SelB SelB subfamily. 99.9 1.2E-21 2.5E-26 164.9 17.7 154 117-280 2-163 (164)
46 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 4.6E-22 9.9E-27 169.4 15.3 157 116-284 3-165 (172)
47 PRK03003 GTP-binding protein D 99.9 5.5E-22 1.2E-26 194.4 17.8 169 114-284 210-383 (472)
48 cd04121 Rab40 Rab40 subfamily. 99.9 6.4E-22 1.4E-26 170.7 16.0 158 114-283 5-167 (189)
49 smart00173 RAS Ras subfamily o 99.9 4.3E-22 9.2E-27 167.9 14.6 155 117-283 2-162 (164)
50 cd01871 Rac1_like Rac1-like su 99.9 7.1E-22 1.5E-26 168.5 15.8 155 116-281 2-173 (174)
51 cd04145 M_R_Ras_like M-Ras/R-R 99.9 7.7E-22 1.7E-26 166.2 15.9 155 116-282 3-163 (164)
52 cd04134 Rho3 Rho3 subfamily. 99.9 4.8E-22 1E-26 171.9 14.9 158 117-284 2-175 (189)
53 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.6E-21 3.6E-26 162.6 17.4 154 117-282 3-156 (157)
54 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 9.2E-22 2E-26 171.8 16.5 157 117-284 2-169 (201)
55 cd00877 Ran Ran (Ras-related n 99.9 5.9E-22 1.3E-26 167.7 14.7 158 117-286 2-162 (166)
56 PLN03118 Rab family protein; P 99.9 6.7E-22 1.5E-26 174.0 15.5 165 114-289 13-183 (211)
57 cd04144 Ras2 Ras2 subfamily. 99.9 4.1E-22 8.9E-27 172.5 13.8 155 117-283 1-163 (190)
58 PRK12299 obgE GTPase CgtA; Rev 99.9 6.9E-22 1.5E-26 184.2 16.1 164 117-284 160-329 (335)
59 cd04128 Spg1 Spg1p. Spg1p (se 99.9 1.2E-21 2.6E-26 168.3 16.4 158 117-286 2-169 (182)
60 cd04175 Rap1 Rap1 subgroup. T 99.9 6.5E-22 1.4E-26 166.9 14.5 155 116-282 2-162 (164)
61 cd01868 Rab11_like Rab11-like. 99.9 9.5E-22 2.1E-26 166.0 15.5 156 116-282 4-164 (165)
62 cd04160 Arfrp1 Arfrp1 subfamil 99.9 7.9E-22 1.7E-26 166.8 15.0 155 117-280 1-166 (167)
63 cd04117 Rab15 Rab15 subfamily. 99.9 1.5E-21 3.3E-26 164.4 16.4 154 117-281 2-160 (161)
64 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.1E-21 2.3E-26 168.4 15.7 155 115-281 5-178 (182)
65 cd01860 Rab5_related Rab5-rela 99.9 1.7E-21 3.7E-26 164.0 16.6 156 116-282 2-162 (163)
66 cd04119 RJL RJL (RabJ-Like) su 99.9 1E-21 2.2E-26 165.8 15.3 154 117-282 2-166 (168)
67 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1.1E-21 2.3E-26 165.9 15.2 157 116-283 3-164 (166)
68 cd04150 Arf1_5_like Arf1-Arf5- 99.9 2.1E-21 4.6E-26 163.1 16.9 151 117-280 2-158 (159)
69 cd01866 Rab2 Rab2 subfamily. 99.9 1.1E-21 2.4E-26 166.4 15.2 157 116-283 5-166 (168)
70 smart00177 ARF ARF-like small 99.9 1.9E-21 4.1E-26 166.1 16.6 156 114-282 12-173 (175)
71 cd04116 Rab9 Rab9 subfamily. 99.9 2.3E-21 5E-26 164.5 17.0 157 116-282 6-170 (170)
72 smart00174 RHO Rho (Ras homolo 99.9 9.6E-22 2.1E-26 167.5 14.3 155 118-283 1-172 (174)
73 cd04113 Rab4 Rab4 subfamily. 99.9 1.5E-21 3.2E-26 164.1 15.3 154 117-282 2-161 (161)
74 cd04157 Arl6 Arl6 subfamily. 99.9 1.5E-21 3.3E-26 164.1 15.3 151 117-280 1-161 (162)
75 PRK00093 GTP-binding protein D 99.9 3.6E-21 7.9E-26 187.6 20.3 168 114-283 172-344 (435)
76 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 1.8E-21 4E-26 172.4 16.4 158 114-283 12-188 (232)
77 PLN00223 ADP-ribosylation fact 99.9 2.6E-21 5.7E-26 166.0 16.9 157 114-283 16-178 (181)
78 cd04131 Rnd Rnd subfamily. Th 99.9 1.5E-21 3.2E-26 167.1 15.2 154 116-281 2-174 (178)
79 cd04176 Rap2 Rap2 subgroup. T 99.9 1.3E-21 2.9E-26 164.8 14.6 155 116-282 2-162 (163)
80 smart00178 SAR Sar1p-like memb 99.9 2.1E-21 4.6E-26 167.1 16.1 157 113-282 15-184 (184)
81 cd01878 HflX HflX subfamily. 99.9 4E-21 8.7E-26 168.2 18.0 161 115-282 41-204 (204)
82 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 2.1E-21 4.6E-26 165.0 15.7 157 117-284 2-166 (170)
83 cd04125 RabA_like RabA-like su 99.9 1.8E-21 3.8E-26 168.2 15.4 158 117-284 2-163 (188)
84 cd04124 RabL2 RabL2 subfamily. 99.9 3.2E-21 6.9E-26 162.4 16.5 154 117-283 2-158 (161)
85 PRK04213 GTP-binding protein; 99.9 6.4E-21 1.4E-25 166.5 19.0 163 114-284 8-193 (201)
86 cd04126 Rab20 Rab20 subfamily. 99.9 2E-21 4.3E-26 171.2 15.6 154 117-283 2-190 (220)
87 TIGR02729 Obg_CgtA Obg family 99.9 1.6E-21 3.4E-26 181.7 15.8 159 117-282 159-328 (329)
88 cd04132 Rho4_like Rho4-like su 99.9 2.7E-21 5.9E-26 166.8 16.1 157 117-284 2-168 (187)
89 cd04156 ARLTS1 ARLTS1 subfamil 99.9 3.5E-21 7.6E-26 161.6 16.2 152 117-280 1-159 (160)
90 cd04109 Rab28 Rab28 subfamily. 99.9 2.9E-21 6.3E-26 170.5 16.4 157 117-284 2-167 (215)
91 KOG0394 Ras-related GTPase [Ge 99.9 1E-21 2.2E-26 160.6 12.3 161 116-286 10-181 (210)
92 KOG1191 Mitochondrial GTPase [ 99.9 2.9E-22 6.3E-27 186.9 10.3 218 61-283 217-450 (531)
93 PTZ00369 Ras-like protein; Pro 99.9 2E-21 4.4E-26 168.0 15.0 158 115-284 5-168 (189)
94 cd01889 SelB_euk SelB subfamil 99.9 4.5E-21 9.8E-26 166.2 17.0 157 117-284 2-187 (192)
95 cd01890 LepA LepA subfamily. 99.9 4.9E-21 1.1E-25 163.9 17.0 156 117-284 2-178 (179)
96 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 8.3E-21 1.8E-25 160.5 17.8 156 116-283 1-166 (168)
97 cd01863 Rab18 Rab18 subfamily. 99.9 6.5E-21 1.4E-25 160.2 16.8 155 117-282 2-161 (161)
98 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 5.6E-21 1.2E-25 164.4 16.7 161 114-283 2-170 (183)
99 smart00175 RAB Rab subfamily o 99.9 4.1E-21 8.9E-26 161.7 15.5 155 117-283 2-162 (164)
100 cd04127 Rab27A Rab27a subfamil 99.9 3.9E-21 8.3E-26 164.7 15.5 157 115-282 4-176 (180)
101 TIGR03598 GTPase_YsxC ribosome 99.9 7.7E-21 1.7E-25 162.9 17.1 158 110-272 13-179 (179)
102 cd01893 Miro1 Miro1 subfamily. 99.9 5.7E-21 1.2E-25 161.6 15.9 156 117-283 2-164 (166)
103 cd00881 GTP_translation_factor 99.9 6.6E-21 1.4E-25 164.1 16.6 157 117-284 1-188 (189)
104 cd04106 Rab23_lke Rab23-like s 99.9 5.8E-21 1.3E-25 160.6 15.8 153 117-281 2-161 (162)
105 PRK12296 obgE GTPase CgtA; Rev 99.9 4.5E-21 9.7E-26 185.2 17.0 164 116-284 160-341 (500)
106 cd01879 FeoB Ferrous iron tran 99.9 3.1E-21 6.7E-26 161.4 13.9 156 120-282 1-156 (158)
107 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 8E-21 1.7E-25 162.1 16.5 153 115-280 15-173 (174)
108 cd04135 Tc10 TC10 subfamily. 99.9 4.6E-21 9.9E-26 163.3 14.8 155 117-282 2-173 (174)
109 COG0218 Predicted GTPase [Gene 99.9 3.7E-20 8E-25 155.9 19.9 169 111-284 20-198 (200)
110 PRK11058 GTPase HflX; Provisio 99.9 7.5E-21 1.6E-25 182.6 17.9 163 116-284 198-363 (426)
111 cd04101 RabL4 RabL4 (Rab-like4 99.9 9.4E-21 2E-25 159.7 16.5 155 117-282 2-163 (164)
112 cd01881 Obg_like The Obg-like 99.9 2.3E-21 4.9E-26 165.2 12.8 159 120-281 1-175 (176)
113 PTZ00133 ADP-ribosylation fact 99.9 1E-20 2.2E-25 162.6 16.8 157 114-283 16-178 (182)
114 cd00157 Rho Rho (Ras homology) 99.9 5.4E-21 1.2E-25 162.1 14.8 153 117-280 2-170 (171)
115 PF00009 GTP_EFTU: Elongation 99.9 4.8E-21 1E-25 165.5 14.6 157 115-283 3-187 (188)
116 cd04110 Rab35 Rab35 subfamily. 99.9 6.5E-21 1.4E-25 166.2 15.5 157 115-283 6-167 (199)
117 PRK09518 bifunctional cytidyla 99.9 7.2E-21 1.6E-25 194.9 18.2 169 114-284 449-622 (712)
118 cd04151 Arl1 Arl1 subfamily. 99.9 9.1E-21 2E-25 159.0 15.6 151 117-280 1-157 (158)
119 PRK00454 engB GTP-binding prot 99.9 3.3E-20 7.1E-25 161.2 19.5 166 114-284 23-195 (196)
120 cd01870 RhoA_like RhoA-like su 99.9 8.5E-21 1.8E-25 161.8 15.4 156 116-282 2-174 (175)
121 cd00879 Sar1 Sar1 subfamily. 99.9 1.5E-20 3.4E-25 162.5 17.2 156 114-282 18-190 (190)
122 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 1E-20 2.3E-25 166.7 16.3 157 116-283 2-176 (222)
123 smart00176 RAN Ran (Ras-relate 99.9 1.8E-20 4E-25 162.9 17.6 165 121-297 1-176 (200)
124 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.3E-20 2.7E-25 158.0 16.0 151 117-280 1-157 (158)
125 cd04147 Ras_dva Ras-dva subfam 99.9 9.7E-21 2.1E-25 165.0 15.9 162 117-290 1-170 (198)
126 cd01862 Rab7 Rab7 subfamily. 99.9 1.4E-20 3E-25 159.8 16.4 157 117-284 2-168 (172)
127 PRK12297 obgE GTPase CgtA; Rev 99.9 9.4E-21 2E-25 180.9 16.6 164 117-287 160-331 (424)
128 PLN03110 Rab GTPase; Provision 99.9 8.5E-21 1.8E-25 167.5 15.0 159 115-284 12-175 (216)
129 cd00154 Rab Rab family. Rab G 99.9 1.8E-20 3.9E-25 156.1 16.2 153 117-280 2-159 (159)
130 cd04123 Rab21 Rab21 subfamily. 99.9 1.7E-20 3.7E-25 157.4 15.8 155 117-282 2-161 (162)
131 cd04118 Rab24 Rab24 subfamily. 99.9 1.5E-20 3.2E-25 163.0 15.7 155 117-283 2-166 (193)
132 cd04143 Rhes_like Rhes_like su 99.9 1.6E-20 3.4E-25 168.6 15.8 155 117-283 2-171 (247)
133 KOG0078 GTP-binding protein SE 99.9 1.1E-20 2.5E-25 159.0 13.9 159 114-284 11-175 (207)
134 cd01892 Miro2 Miro2 subfamily. 99.9 1.3E-20 2.7E-25 160.1 14.2 157 115-283 4-166 (169)
135 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.4E-20 3.1E-25 160.3 14.4 153 117-280 2-171 (173)
136 cd04111 Rab39 Rab39 subfamily. 99.9 1.7E-20 3.7E-25 164.9 15.3 157 116-283 3-166 (211)
137 cd04115 Rab33B_Rab33A Rab33B/R 99.9 2.9E-20 6.2E-25 157.9 16.2 158 115-282 2-168 (170)
138 cd04114 Rab30 Rab30 subfamily. 99.9 2.9E-20 6.3E-25 157.5 16.2 157 115-282 7-168 (169)
139 TIGR02528 EutP ethanolamine ut 99.9 1.5E-20 3.2E-25 154.8 13.9 139 117-279 2-141 (142)
140 cd04177 RSR1 RSR1 subgroup. R 99.8 2.7E-20 5.9E-25 157.7 15.8 155 117-282 3-163 (168)
141 cd04139 RalA_RalB RalA/RalB su 99.8 2.7E-20 5.8E-25 156.6 15.5 153 117-282 2-161 (164)
142 cd00876 Ras Ras family. The R 99.8 2.7E-20 5.9E-25 155.8 14.7 154 117-282 1-160 (160)
143 KOG0098 GTPase Rab2, small G p 99.8 1.5E-20 3.2E-25 154.1 12.5 158 116-283 7-168 (216)
144 cd04146 RERG_RasL11_like RERG/ 99.8 1.4E-20 2.9E-25 159.0 12.4 155 117-282 1-163 (165)
145 cd04161 Arl2l1_Arl13_like Arl2 99.8 6.9E-20 1.5E-24 155.2 16.4 151 117-280 1-166 (167)
146 cd04103 Centaurin_gamma Centau 99.8 4.7E-20 1E-24 154.7 14.9 148 117-281 2-157 (158)
147 COG1084 Predicted GTPase [Gene 99.8 7.1E-20 1.5E-24 163.8 16.7 172 109-284 162-337 (346)
148 PLN03108 Rab family protein; P 99.8 5E-20 1.1E-24 161.9 15.6 159 115-284 6-169 (210)
149 TIGR00231 small_GTP small GTP- 99.8 8.4E-20 1.8E-24 151.7 15.7 157 116-279 2-160 (161)
150 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 4.1E-20 8.9E-25 156.1 13.9 149 118-280 2-163 (164)
151 PRK05306 infB translation init 99.8 1E-19 2.2E-24 185.0 19.1 203 112-338 287-496 (787)
152 PRK15467 ethanolamine utilizat 99.8 7.8E-20 1.7E-24 153.3 14.8 146 117-284 3-148 (158)
153 KOG0080 GTPase Rab18, small G 99.8 3.3E-20 7E-25 148.2 11.7 166 114-290 10-181 (209)
154 cd04148 RGK RGK subfamily. Th 99.8 5.8E-20 1.3E-24 162.7 14.6 155 117-283 2-163 (221)
155 cd04155 Arl3 Arl3 subfamily. 99.8 1.2E-19 2.6E-24 154.3 16.0 154 114-280 13-172 (173)
156 cd01891 TypA_BipA TypA (tyrosi 99.8 1.9E-19 4.2E-24 156.3 17.1 146 117-273 4-172 (194)
157 cd00880 Era_like Era (E. coli 99.8 1.6E-19 3.4E-24 150.2 15.9 159 120-282 1-163 (163)
158 cd01888 eIF2_gamma eIF2-gamma 99.8 2.6E-19 5.6E-24 156.5 18.0 160 117-286 2-202 (203)
159 CHL00189 infB translation init 99.8 2.7E-19 5.8E-24 180.3 20.0 219 113-361 242-472 (742)
160 PRK09602 translation-associate 99.8 2.8E-19 6.2E-24 170.0 18.8 190 116-316 2-301 (396)
161 cd04159 Arl10_like Arl10-like 99.8 2.2E-19 4.9E-24 149.6 15.6 151 118-280 2-158 (159)
162 cd01873 RhoBTB RhoBTB subfamil 99.8 1.6E-19 3.4E-24 156.7 15.1 154 116-281 3-194 (195)
163 TIGR00487 IF-2 translation ini 99.8 2.9E-19 6.3E-24 177.6 18.5 201 113-337 85-293 (587)
164 PF00025 Arf: ADP-ribosylation 99.8 2E-19 4.4E-24 153.5 15.1 155 114-281 13-174 (175)
165 PTZ00132 GTP-binding nuclear p 99.8 4.2E-19 9.2E-24 156.7 17.3 170 114-295 8-180 (215)
166 cd04129 Rho2 Rho2 subfamily. 99.8 1.9E-19 4.1E-24 155.4 14.7 157 117-284 3-174 (187)
167 cd04137 RheB Rheb (Ras Homolog 99.8 2.3E-19 5E-24 153.7 14.6 156 117-284 3-164 (180)
168 PF00071 Ras: Ras family; Int 99.8 1.5E-19 3.2E-24 152.1 13.1 155 117-282 1-160 (162)
169 PRK09554 feoB ferrous iron tra 99.8 3.2E-19 6.9E-24 182.2 17.5 163 114-283 2-168 (772)
170 cd04166 CysN_ATPS CysN_ATPS su 99.8 3.4E-19 7.4E-24 156.4 15.1 157 117-290 1-194 (208)
171 TIGR00491 aIF-2 translation in 99.8 1.9E-18 4.2E-23 171.5 22.3 156 113-281 2-214 (590)
172 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.1E-18 2.3E-23 151.1 17.7 145 116-271 3-171 (195)
173 cd01896 DRG The developmentall 99.8 6.8E-19 1.5E-23 156.8 16.2 156 117-283 2-226 (233)
174 COG2262 HflX GTPases [General 99.8 6.6E-19 1.4E-23 162.3 15.4 165 115-286 192-359 (411)
175 KOG0087 GTPase Rab11/YPT3, sma 99.8 2.7E-19 5.8E-24 150.0 11.4 160 114-283 13-176 (222)
176 TIGR01393 lepA GTP-binding pro 99.8 9.6E-19 2.1E-23 174.8 17.5 198 116-339 4-223 (595)
177 COG0370 FeoB Fe2+ transport sy 99.8 1.2E-18 2.7E-23 169.9 16.5 165 115-286 3-167 (653)
178 COG0532 InfB Translation initi 99.8 1.3E-18 2.9E-23 165.2 16.3 158 113-282 3-169 (509)
179 TIGR00475 selB selenocysteine- 99.8 2.8E-18 6.1E-23 171.4 18.8 157 117-284 2-167 (581)
180 KOG0093 GTPase Rab3, small G p 99.8 1.2E-18 2.7E-23 137.2 12.4 156 117-283 23-183 (193)
181 PRK12317 elongation factor 1-a 99.8 7.2E-19 1.6E-23 170.6 13.6 150 114-273 5-195 (425)
182 cd01876 YihA_EngB The YihA (En 99.8 8.4E-18 1.8E-22 141.5 18.5 160 118-282 2-170 (170)
183 TIGR00437 feoB ferrous iron tr 99.8 1.3E-18 2.8E-23 173.9 15.5 154 122-282 1-154 (591)
184 KOG0079 GTP-binding protein H- 99.8 9.3E-19 2E-23 138.0 10.6 154 117-283 10-169 (198)
185 PRK05433 GTP-binding protein L 99.8 4.2E-18 9.1E-23 170.4 18.0 199 115-339 7-227 (600)
186 KOG1144 Translation initiation 99.8 3.8E-18 8.1E-23 165.2 16.8 215 110-362 470-741 (1064)
187 KOG0095 GTPase Rab30, small G 99.8 2.5E-18 5.5E-23 135.7 11.9 157 116-282 8-168 (213)
188 PF01926 MMR_HSR1: 50S ribosom 99.8 3.7E-18 8E-23 135.6 13.0 116 117-235 1-116 (116)
189 PRK10512 selenocysteinyl-tRNA- 99.8 7.6E-18 1.6E-22 168.8 18.3 157 117-284 2-167 (614)
190 KOG1489 Predicted GTP-binding 99.8 1.8E-18 3.8E-23 153.6 11.9 159 117-281 198-365 (366)
191 cd04168 TetM_like Tet(M)-like 99.8 9.7E-18 2.1E-22 149.6 16.8 157 117-284 1-236 (237)
192 KOG0086 GTPase Rab4, small G p 99.8 5.1E-18 1.1E-22 134.5 13.1 155 116-280 10-168 (214)
193 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.7E-17 3.6E-22 146.7 17.7 153 117-280 1-220 (224)
194 KOG0462 Elongation factor-type 99.8 1.9E-17 4.1E-22 156.3 18.5 197 114-335 59-274 (650)
195 PF10662 PduV-EutP: Ethanolami 99.8 8.9E-18 1.9E-22 135.5 13.8 139 117-279 3-142 (143)
196 KOG0073 GTP-binding ADP-ribosy 99.8 1.5E-17 3.2E-22 133.7 14.9 156 114-283 15-178 (185)
197 PRK10218 GTP-binding protein; 99.8 2.2E-17 4.7E-22 164.5 19.3 201 116-340 6-239 (607)
198 TIGR01394 TypA_BipA GTP-bindin 99.8 3.3E-17 7.1E-22 163.4 20.1 200 117-340 3-235 (594)
199 PRK04004 translation initiatio 99.8 8.8E-17 1.9E-21 160.3 22.9 155 113-280 4-215 (586)
200 cd01886 EF-G Elongation factor 99.8 2.1E-17 4.6E-22 150.0 16.9 113 117-240 1-130 (270)
201 KOG0088 GTPase Rab21, small G 99.8 7.1E-19 1.5E-23 140.2 5.6 157 115-283 13-175 (218)
202 cd01852 AIG1 AIG1 (avrRpt2-ind 99.8 1E-17 2.2E-22 145.7 13.3 173 117-292 2-194 (196)
203 cd01899 Ygr210 Ygr210 subfamil 99.8 3.1E-17 6.6E-22 151.7 17.2 169 118-292 1-278 (318)
204 PRK12736 elongation factor Tu; 99.8 1.9E-17 4.2E-22 158.7 16.3 201 114-339 11-244 (394)
205 COG1163 DRG Predicted GTPase [ 99.8 6.3E-18 1.4E-22 150.7 11.7 157 117-283 65-289 (365)
206 cd04169 RF3 RF3 subfamily. Pe 99.7 9.5E-17 2.1E-21 145.6 18.3 114 116-240 3-137 (267)
207 cd01883 EF1_alpha Eukaryotic e 99.7 1.4E-17 3E-22 147.3 12.2 146 117-272 1-194 (219)
208 cd00882 Ras_like_GTPase Ras-li 99.7 4.9E-17 1.1E-21 133.6 14.5 151 120-280 1-157 (157)
209 KOG1145 Mitochondrial translat 99.7 5.5E-17 1.2E-21 153.1 16.4 157 113-282 151-315 (683)
210 TIGR03680 eif2g_arch translati 99.7 9.4E-17 2E-21 154.5 17.7 161 114-284 3-197 (406)
211 CHL00071 tufA elongation facto 99.7 1.7E-16 3.7E-21 152.9 19.3 159 114-283 11-211 (409)
212 PRK00741 prfC peptide chain re 99.7 8.9E-17 1.9E-21 158.3 17.0 229 114-359 9-349 (526)
213 KOG0091 GTPase Rab39, small G 99.7 3.2E-17 6.9E-22 131.5 10.7 158 114-282 7-172 (213)
214 PRK09866 hypothetical protein; 99.7 2E-16 4.4E-21 153.9 18.2 116 163-282 230-352 (741)
215 PRK12735 elongation factor Tu; 99.7 3.3E-16 7.1E-21 150.3 19.6 160 114-284 11-204 (396)
216 PLN03127 Elongation factor Tu; 99.7 3.2E-16 6.9E-21 151.8 19.7 160 114-284 60-253 (447)
217 TIGR00483 EF-1_alpha translati 99.7 6.1E-17 1.3E-21 157.1 14.6 150 114-273 6-197 (426)
218 KOG0070 GTP-binding ADP-ribosy 99.7 4.4E-17 9.6E-22 134.5 11.2 160 112-284 14-179 (181)
219 COG0536 Obg Predicted GTPase [ 99.7 4.8E-17 1E-21 146.3 12.3 164 117-285 161-335 (369)
220 PRK04000 translation initiatio 99.7 2.2E-16 4.8E-21 151.9 17.8 161 114-284 8-202 (411)
221 TIGR00503 prfC peptide chain r 99.7 1.6E-16 3.4E-21 156.7 16.4 227 114-358 10-349 (527)
222 TIGR00484 EF-G translation elo 99.7 1.7E-16 3.6E-21 162.5 17.0 116 114-240 9-141 (689)
223 PRK12739 elongation factor G; 99.7 1.9E-16 4.1E-21 162.0 17.2 116 114-240 7-139 (691)
224 TIGR00485 EF-Tu translation el 99.7 6.1E-16 1.3E-20 148.5 19.3 159 114-283 11-201 (394)
225 KOG0395 Ras-related GTPase [Ge 99.7 1.1E-16 2.5E-21 138.1 12.7 159 114-284 2-166 (196)
226 cd04170 EF-G_bact Elongation f 99.7 3.3E-16 7.3E-21 142.8 16.4 113 117-240 1-130 (268)
227 PRK00007 elongation factor G; 99.7 4.1E-16 9E-21 159.4 17.7 116 114-240 9-141 (693)
228 PRK00049 elongation factor Tu; 99.7 1.2E-15 2.7E-20 146.2 19.6 159 114-283 11-203 (396)
229 cd04105 SR_beta Signal recogni 99.7 5.9E-16 1.3E-20 135.2 15.3 115 116-241 1-124 (203)
230 KOG0075 GTP-binding ADP-ribosy 99.7 1.8E-16 3.8E-21 125.1 10.7 157 115-283 20-182 (186)
231 PRK13351 elongation factor G; 99.7 5.1E-16 1.1E-20 159.2 17.3 116 114-240 7-139 (687)
232 cd04102 RabL3 RabL3 (Rab-like3 99.7 7.2E-16 1.6E-20 134.1 15.4 142 117-269 2-176 (202)
233 PLN03126 Elongation factor Tu; 99.7 6.2E-16 1.3E-20 150.5 16.3 146 114-270 80-249 (478)
234 PRK05124 cysN sulfate adenylyl 99.7 4.8E-16 1E-20 151.9 15.3 151 114-274 26-216 (474)
235 COG0481 LepA Membrane GTPase L 99.7 3.3E-16 7.1E-21 145.8 13.2 199 115-338 9-228 (603)
236 cd01885 EF2 EF2 (for archaea a 99.7 1.6E-15 3.4E-20 133.6 17.0 112 117-239 2-138 (222)
237 TIGR02034 CysN sulfate adenyly 99.7 4.9E-16 1.1E-20 149.5 14.4 147 117-273 2-187 (406)
238 cd04167 Snu114p Snu114p subfam 99.7 8.5E-16 1.8E-20 135.4 12.4 112 117-239 2-136 (213)
239 cd04104 p47_IIGP_like p47 (47- 99.7 1.4E-15 3.1E-20 132.2 13.6 159 116-284 2-185 (197)
240 COG3596 Predicted GTPase [Gene 99.7 1.8E-15 3.9E-20 132.7 14.1 172 114-287 38-226 (296)
241 COG2229 Predicted GTPase [Gene 99.7 7.5E-15 1.6E-19 121.1 16.2 157 114-281 9-176 (187)
242 PTZ00327 eukaryotic translatio 99.6 3.9E-15 8.5E-20 144.0 16.8 161 115-285 34-235 (460)
243 KOG0083 GTPase Rab26/Rab37, sm 99.6 4.2E-17 9.1E-22 126.4 2.4 156 120-286 2-163 (192)
244 KOG0097 GTPase Rab14, small G 99.6 2.6E-15 5.6E-20 117.6 12.4 155 116-282 12-172 (215)
245 PRK05506 bifunctional sulfate 99.6 2.7E-15 6E-20 152.2 16.2 149 115-273 24-211 (632)
246 COG1100 GTPase SAR1 and relate 99.6 8E-15 1.7E-19 129.5 16.8 160 116-284 6-186 (219)
247 KOG0081 GTPase Rab27, small G 99.6 3.1E-16 6.7E-21 125.3 6.5 155 117-283 11-181 (219)
248 PRK09435 membrane ATPase/prote 99.6 4.3E-15 9.2E-20 137.6 14.9 184 114-319 55-296 (332)
249 PTZ00141 elongation factor 1- 99.6 5.9E-15 1.3E-19 143.2 16.5 149 114-273 6-203 (446)
250 PLN00023 GTP-binding protein; 99.6 5E-15 1.1E-19 135.3 15.0 123 110-241 16-166 (334)
251 KOG0071 GTP-binding ADP-ribosy 99.6 7.1E-15 1.5E-19 115.2 13.5 158 114-284 16-179 (180)
252 PTZ00099 rab6; Provisional 99.6 2.5E-15 5.5E-20 128.1 11.9 118 158-286 24-145 (176)
253 KOG0393 Ras-related small GTPa 99.6 5.6E-16 1.2E-20 131.3 7.5 162 114-286 3-182 (198)
254 KOG0076 GTP-binding ADP-ribosy 99.6 2.2E-15 4.7E-20 122.5 9.3 161 116-285 18-189 (197)
255 PF08477 Miro: Miro-like prote 99.6 2.4E-15 5.1E-20 119.8 8.8 111 117-237 1-119 (119)
256 KOG1490 GTP-binding protein CR 99.6 1.6E-15 3.6E-20 141.9 7.9 167 112-280 165-338 (620)
257 PRK12740 elongation factor G; 99.6 5.1E-14 1.1E-18 144.2 18.8 109 121-240 1-126 (668)
258 PLN00043 elongation factor 1-a 99.6 1.4E-14 3.1E-19 140.4 13.8 148 115-273 7-203 (447)
259 COG1217 TypA Predicted membran 99.6 2.2E-13 4.9E-18 126.7 19.0 158 117-286 7-198 (603)
260 KOG0074 GTP-binding ADP-ribosy 99.6 1.6E-14 3.4E-19 113.4 9.6 162 111-284 13-180 (185)
261 COG5256 TEF1 Translation elong 99.6 1E-13 2.2E-18 128.1 15.6 200 115-339 7-265 (428)
262 PTZ00258 GTP-binding protein; 99.5 1.9E-13 4.1E-18 128.9 15.5 90 114-206 20-126 (390)
263 KOG3883 Ras family small GTPas 99.5 2.7E-13 5.8E-18 108.0 13.3 162 114-284 8-176 (198)
264 cd01882 BMS1 Bms1. Bms1 is an 99.5 3.9E-13 8.5E-18 119.2 16.0 136 116-270 40-183 (225)
265 PRK14845 translation initiatio 99.5 1.4E-12 2.9E-17 136.1 21.6 145 126-282 472-672 (1049)
266 KOG0072 GTP-binding ADP-ribosy 99.5 4.5E-14 9.7E-19 111.2 8.1 158 114-284 17-180 (182)
267 PRK13768 GTPase; Provisional 99.5 2.4E-13 5.2E-18 122.5 14.0 121 164-286 98-250 (253)
268 cd01853 Toc34_like Toc34-like 99.5 3.5E-13 7.6E-18 120.8 14.6 128 114-241 30-164 (249)
269 COG4917 EutP Ethanolamine util 99.5 2.4E-13 5.3E-18 104.7 10.7 142 117-281 3-144 (148)
270 KOG1424 Predicted GTP-binding 99.5 3.3E-14 7.2E-19 133.9 7.0 155 13-179 217-375 (562)
271 cd01850 CDC_Septin CDC/Septin. 99.5 1.8E-12 3.9E-17 118.3 17.5 130 116-248 5-165 (276)
272 KOG1673 Ras GTPases [General f 99.5 3.2E-13 6.8E-18 107.8 10.2 169 113-292 18-195 (205)
273 cd01858 NGP_1 NGP-1. Autoanti 99.5 9.1E-14 2E-18 116.4 7.0 148 190-360 3-156 (157)
274 PRK09601 GTP-binding protein Y 99.5 1.3E-12 2.7E-17 122.0 14.9 88 116-206 3-107 (364)
275 COG5257 GCD11 Translation init 99.5 1.3E-12 2.8E-17 116.6 13.5 166 114-289 9-208 (415)
276 KOG1707 Predicted Ras related/ 99.5 2.6E-13 5.7E-18 129.6 9.7 160 113-283 7-175 (625)
277 KOG4252 GTP-binding protein [S 99.4 2.9E-14 6.3E-19 116.3 2.1 159 114-283 19-181 (246)
278 KOG0090 Signal recognition par 99.4 1.7E-12 3.7E-17 109.5 12.3 156 116-282 39-238 (238)
279 cd01900 YchF YchF subfamily. 99.4 9.5E-13 2.1E-17 119.0 11.4 86 118-206 1-103 (274)
280 PRK07560 elongation factor EF- 99.4 1.5E-12 3.2E-17 134.2 13.8 115 114-239 19-152 (731)
281 KOG0096 GTPase Ran/TC4/GSP1 (n 99.4 3.2E-13 7E-18 111.5 7.1 161 115-287 10-173 (216)
282 KOG1532 GTPase XAB1, interacts 99.4 4.1E-13 8.8E-18 117.3 7.8 154 163-320 116-301 (366)
283 TIGR00991 3a0901s02IAP34 GTP-b 99.4 3.6E-12 7.9E-17 116.0 14.3 127 112-240 35-167 (313)
284 PF09439 SRPRB: Signal recogni 99.4 1.3E-12 2.8E-17 110.4 9.8 119 114-242 2-128 (181)
285 COG4108 PrfC Peptide chain rel 99.4 6E-12 1.3E-16 116.7 14.8 117 114-241 11-148 (528)
286 COG3276 SelB Selenocysteine-sp 99.4 5.6E-12 1.2E-16 117.5 14.2 157 117-283 2-162 (447)
287 KOG0410 Predicted GTP binding 99.4 1.3E-12 2.7E-17 116.8 9.3 158 114-283 177-341 (410)
288 KOG0461 Selenocysteine-specifi 99.4 9.3E-12 2E-16 112.0 14.4 161 115-286 7-196 (522)
289 cd01859 MJ1464 MJ1464. This f 99.4 9.1E-13 2E-17 110.2 6.6 145 188-360 5-155 (156)
290 cd01855 YqeH YqeH. YqeH is an 99.4 1.3E-12 2.9E-17 112.9 7.0 119 186-331 25-150 (190)
291 PTZ00416 elongation factor 2; 99.4 4.9E-12 1.1E-16 131.7 12.5 115 114-239 18-157 (836)
292 PLN00116 translation elongatio 99.4 8.6E-12 1.9E-16 130.1 13.9 115 114-239 18-163 (843)
293 PF04548 AIG1: AIG1 family; I 99.3 4.2E-12 9.2E-17 111.6 9.7 167 117-286 2-189 (212)
294 KOG0077 Vesicle coat complex C 99.3 3.1E-12 6.6E-17 103.5 7.7 156 114-282 19-192 (193)
295 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 1.9E-11 4.2E-16 107.8 13.4 164 117-285 1-178 (232)
296 TIGR00490 aEF-2 translation el 99.3 3.7E-12 7.9E-17 131.0 9.7 116 114-240 18-152 (720)
297 KOG0458 Elongation factor 1 al 99.3 3.1E-11 6.8E-16 115.7 14.6 208 114-341 176-441 (603)
298 COG0050 TufB GTPases - transla 99.3 4.4E-11 9.6E-16 105.6 14.2 163 114-287 11-205 (394)
299 cd01849 YlqF_related_GTPase Yl 99.3 1.6E-12 3.4E-17 108.6 4.2 146 197-360 1-154 (155)
300 COG2895 CysN GTPases - Sulfate 99.3 3.4E-11 7.3E-16 109.0 12.5 149 115-273 6-193 (431)
301 TIGR03596 GTPase_YlqF ribosome 99.3 3.4E-12 7.4E-17 116.7 6.3 156 186-361 12-173 (276)
302 PF00350 Dynamin_N: Dynamin fa 99.3 2.8E-11 6.1E-16 102.3 11.4 112 118-236 1-168 (168)
303 KOG1486 GTP-binding protein DR 99.3 1.4E-11 3.1E-16 106.4 9.4 158 116-283 63-288 (364)
304 TIGR02836 spore_IV_A stage IV 99.3 3.2E-11 6.9E-16 112.4 12.3 159 116-282 18-233 (492)
305 smart00053 DYNc Dynamin, GTPas 99.3 5.6E-11 1.2E-15 105.5 13.4 126 114-242 25-208 (240)
306 TIGR00073 hypB hydrogenase acc 99.3 2.2E-11 4.9E-16 106.7 10.5 57 226-282 148-206 (207)
307 cd01857 HSR1_MMR1 HSR1/MMR1. 99.3 5.4E-12 1.2E-16 103.7 5.5 129 188-361 4-138 (141)
308 PF03029 ATP_bind_1: Conserved 99.3 2.3E-11 4.9E-16 108.4 9.8 114 164-281 92-235 (238)
309 cd01856 YlqF YlqF. Proteins o 99.2 1.2E-11 2.7E-16 105.0 6.8 155 185-360 9-169 (171)
310 COG0480 FusA Translation elong 99.2 6.5E-11 1.4E-15 119.3 12.8 117 114-241 9-143 (697)
311 KOG4423 GTP-binding protein-li 99.2 5.5E-12 1.2E-16 103.9 3.4 158 117-284 27-195 (229)
312 COG0012 Predicted GTPase, prob 99.2 1.1E-10 2.4E-15 107.5 12.2 87 116-207 3-109 (372)
313 PF03308 ArgK: ArgK protein; 99.2 2E-11 4.3E-16 107.4 6.6 181 114-317 28-264 (266)
314 TIGR00750 lao LAO/AO transport 99.2 4.4E-10 9.6E-15 104.0 15.4 105 161-283 125-238 (300)
315 PRK09563 rbgA GTPase YlqF; Rev 99.2 1.3E-11 2.8E-16 113.5 4.9 155 187-361 16-176 (287)
316 PRK12289 GTPase RsgA; Reviewed 99.2 3.8E-11 8.3E-16 112.6 7.4 109 192-333 86-197 (352)
317 TIGR00993 3a0901s04IAP86 chlor 99.2 4.1E-10 8.8E-15 110.8 14.5 126 114-240 117-250 (763)
318 TIGR00157 ribosome small subun 99.2 3.3E-11 7.2E-16 108.1 6.3 108 192-332 33-144 (245)
319 TIGR00101 ureG urease accessor 99.2 3.4E-10 7.4E-15 98.3 12.2 80 196-283 113-196 (199)
320 KOG2486 Predicted GTPase [Gene 99.2 1.3E-10 2.8E-15 102.2 8.9 168 109-281 130-314 (320)
321 PF05049 IIGP: Interferon-indu 99.2 2.3E-10 4.9E-15 107.0 10.9 160 116-284 36-219 (376)
322 PRK10463 hydrogenase nickel in 99.1 9.1E-11 2E-15 106.1 7.7 55 227-281 231-287 (290)
323 COG0378 HypB Ni2+-binding GTPa 99.1 7.6E-10 1.7E-14 93.0 12.4 79 198-282 120-200 (202)
324 COG1703 ArgK Putative periplas 99.1 7.1E-10 1.5E-14 98.9 12.6 150 114-283 50-254 (323)
325 TIGR03597 GTPase_YqeH ribosome 99.1 2.8E-10 6E-15 107.9 9.6 142 187-360 55-213 (360)
326 KOG1487 GTP-binding protein DR 99.1 2.1E-10 4.6E-15 99.6 7.2 157 117-283 61-281 (358)
327 PF00735 Septin: Septin; Inte 99.1 2.4E-09 5.2E-14 97.7 13.9 134 116-252 5-168 (281)
328 KOG1954 Endocytosis/signaling 99.0 3.3E-09 7.3E-14 96.6 12.5 132 115-248 58-233 (532)
329 KOG0465 Mitochondrial elongati 99.0 7.1E-10 1.5E-14 106.7 8.3 117 114-241 38-171 (721)
330 PRK13796 GTPase YqeH; Provisio 99.0 1.5E-09 3.2E-14 103.1 9.8 112 190-329 63-181 (365)
331 PRK00098 GTPase RsgA; Reviewed 99.0 5.1E-10 1.1E-14 103.4 5.6 109 193-333 78-189 (298)
332 cd01858 NGP_1 NGP-1. Autoanti 99.0 1.6E-09 3.4E-14 90.7 7.1 56 115-173 102-157 (157)
333 cd04178 Nucleostemin_like Nucl 99.0 1.5E-09 3.3E-14 91.9 7.0 56 115-173 117-172 (172)
334 PRK12288 GTPase RsgA; Reviewed 99.0 2.2E-09 4.7E-14 100.8 8.6 108 193-333 118-230 (347)
335 cd04178 Nucleostemin_like Nucl 98.9 1.2E-09 2.7E-14 92.5 6.1 140 197-360 1-171 (172)
336 KOG0468 U5 snRNP-specific prot 98.9 4E-09 8.6E-14 102.4 10.2 126 103-239 116-262 (971)
337 COG5258 GTPBP1 GTPase [General 98.9 1.3E-08 2.8E-13 93.3 12.7 166 114-288 116-344 (527)
338 KOG0460 Mitochondrial translat 98.9 2.4E-08 5.3E-13 90.2 13.5 163 114-287 53-249 (449)
339 cd01854 YjeQ_engC YjeQ/EngC. 98.9 1.7E-09 3.7E-14 99.4 6.2 108 193-333 76-186 (287)
340 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 4.2E-09 9E-14 86.5 6.8 55 117-174 85-139 (141)
341 KOG0467 Translation elongation 98.9 1.4E-08 3E-13 100.2 11.0 114 114-238 8-136 (887)
342 COG1161 Predicted GTPases [Gen 98.9 4.7E-09 1E-13 97.8 7.0 61 114-177 131-191 (322)
343 KOG0466 Translation initiation 98.8 1E-08 2.2E-13 91.2 7.5 116 164-289 126-247 (466)
344 KOG1143 Predicted translation 98.8 1.4E-08 3.1E-13 92.6 8.5 181 115-307 167-411 (591)
345 KOG1491 Predicted GTP-binding 98.8 5.2E-08 1.1E-12 88.2 11.4 88 114-206 19-125 (391)
346 cd01849 YlqF_related_GTPase Yl 98.8 1.5E-08 3.3E-13 84.5 6.8 57 114-173 99-155 (155)
347 PRK09563 rbgA GTPase YlqF; Rev 98.8 2.1E-08 4.5E-13 92.3 7.8 60 114-176 120-179 (287)
348 cd01855 YqeH YqeH. YqeH is an 98.8 1.3E-08 2.9E-13 87.8 6.1 56 115-173 127-190 (190)
349 COG5019 CDC3 Septin family pro 98.7 3.8E-07 8.2E-12 83.9 15.4 134 116-252 24-188 (373)
350 TIGR03596 GTPase_YlqF ribosome 98.7 3E-08 6.5E-13 90.7 8.0 60 114-176 117-176 (276)
351 cd01856 YlqF YlqF. Proteins o 98.7 3.6E-08 7.8E-13 83.7 7.8 57 114-173 114-170 (171)
352 cd01851 GBP Guanylate-binding 98.7 5.8E-08 1.3E-12 86.0 9.1 90 117-209 9-105 (224)
353 TIGR00092 GTP-binding protein 98.7 4.1E-08 8.8E-13 92.0 7.9 90 116-207 3-109 (368)
354 TIGR03597 GTPase_YqeH ribosome 98.7 2.6E-08 5.6E-13 94.5 6.5 131 116-253 155-293 (360)
355 KOG0464 Elongation factor G [T 98.7 8.2E-09 1.8E-13 95.3 2.7 118 112-240 34-168 (753)
356 KOG3886 GTP-binding protein [S 98.7 6.5E-08 1.4E-12 83.0 7.3 123 116-242 5-132 (295)
357 KOG2655 Septin family protein 98.7 6.6E-07 1.4E-11 82.9 14.2 134 116-252 22-184 (366)
358 COG1161 Predicted GTPases [Gen 98.6 1E-07 2.2E-12 88.9 7.0 147 187-360 26-186 (322)
359 KOG1547 Septin CDC10 and relat 98.6 1.2E-06 2.7E-11 75.7 12.8 132 117-251 48-209 (336)
360 cd01859 MJ1464 MJ1464. This f 98.6 1.8E-07 3.8E-12 78.1 7.2 56 115-173 101-156 (156)
361 KOG3905 Dynein light intermedi 98.5 2.6E-06 5.7E-11 76.8 14.3 157 117-284 54-291 (473)
362 KOG0448 Mitofusin 1 GTPase, in 98.5 9E-07 2E-11 86.9 11.6 145 114-267 108-310 (749)
363 PRK12289 GTPase RsgA; Reviewed 98.5 1.5E-07 3.2E-12 88.5 6.0 56 117-175 174-236 (352)
364 smart00010 small_GTPase Small 98.5 1.6E-07 3.4E-12 74.7 5.3 113 117-272 2-115 (124)
365 KOG0463 GTP-binding protein GP 98.5 6.5E-07 1.4E-11 82.1 9.7 162 112-283 130-357 (641)
366 cd03112 CobW_like The function 98.5 6.2E-07 1.3E-11 75.0 8.4 71 162-238 86-158 (158)
367 PRK12288 GTPase RsgA; Reviewed 98.5 3E-07 6.6E-12 86.4 7.3 57 117-176 207-270 (347)
368 PRK13796 GTPase YqeH; Provisio 98.5 2.8E-07 6.2E-12 87.5 6.6 56 116-174 161-221 (365)
369 PF05783 DLIC: Dynein light in 98.5 2.9E-06 6.3E-11 82.5 13.6 62 226-288 196-269 (472)
370 PRK10416 signal recognition pa 98.4 7.6E-06 1.6E-10 76.1 14.7 149 115-275 114-302 (318)
371 TIGR00157 ribosome small subun 98.4 4.7E-07 1E-11 81.3 6.3 57 116-176 121-184 (245)
372 PF03193 DUF258: Protein of un 98.3 6.8E-07 1.5E-11 74.2 4.8 57 116-175 36-99 (161)
373 KOG2423 Nucleolar GTPase [Gene 98.3 4.5E-07 9.7E-12 83.6 3.9 63 112-177 304-366 (572)
374 TIGR01425 SRP54_euk signal rec 98.3 7.1E-06 1.5E-10 78.7 11.9 119 115-240 100-253 (429)
375 TIGR00064 ftsY signal recognit 98.3 2.8E-05 6.1E-10 70.8 15.0 102 161-275 153-260 (272)
376 COG0523 Putative GTPases (G3E 98.3 7.1E-06 1.5E-10 76.2 11.1 154 116-276 2-194 (323)
377 COG5192 BMS1 GTP-binding prote 98.3 8E-06 1.7E-10 78.6 11.4 133 116-267 70-210 (1077)
378 COG1162 Predicted GTPases [Gen 98.3 4.6E-06 1E-10 75.6 8.9 109 193-333 77-189 (301)
379 KOG2484 GTPase [General functi 98.2 6.6E-07 1.4E-11 82.8 2.5 62 113-177 250-311 (435)
380 PRK14974 cell division protein 98.2 1E-05 2.2E-10 75.6 10.4 101 162-275 222-322 (336)
381 PRK01889 GTPase RsgA; Reviewed 98.2 7.5E-06 1.6E-10 77.6 9.5 83 193-279 110-193 (356)
382 KOG0459 Polypeptide release fa 98.2 5E-06 1.1E-10 77.1 8.0 157 110-276 74-279 (501)
383 KOG2484 GTPase [General functi 98.2 1.9E-06 4.1E-11 79.8 5.0 75 183-257 134-208 (435)
384 PRK00098 GTPase RsgA; Reviewed 98.2 5.2E-06 1.1E-10 76.8 8.0 57 116-175 165-228 (298)
385 PF02492 cobW: CobW/HypB/UreG, 98.2 1.6E-05 3.6E-10 67.8 10.4 137 116-261 1-177 (178)
386 COG1162 Predicted GTPases [Gen 98.2 3.8E-06 8.2E-11 76.1 6.3 60 115-177 164-230 (301)
387 KOG0447 Dynamin-like GTP bindi 98.1 7E-05 1.5E-09 72.1 14.3 76 163-240 412-493 (980)
388 KOG2485 Conserved ATP/GTP bind 98.1 5.9E-06 1.3E-10 74.4 6.8 64 115-178 143-211 (335)
389 KOG1707 Predicted Ras related/ 98.1 3.9E-05 8.4E-10 74.5 12.3 153 117-284 427-584 (625)
390 cd01854 YjeQ_engC YjeQ/EngC. 98.1 6.9E-06 1.5E-10 75.6 6.3 57 116-175 162-225 (287)
391 KOG1424 Predicted GTP-binding 98.0 2.2E-05 4.7E-10 75.2 9.0 79 187-267 166-244 (562)
392 PRK14722 flhF flagellar biosyn 98.0 4.7E-05 1E-09 72.0 10.5 124 114-240 136-295 (374)
393 KOG2743 Cobalamin synthesis pr 98.0 3.1E-05 6.7E-10 69.3 8.3 143 110-255 52-240 (391)
394 TIGR02475 CobW cobalamin biosy 98.0 8.7E-05 1.9E-09 69.9 11.6 155 114-276 3-223 (341)
395 KOG0469 Elongation factor 2 [T 97.9 1.2E-05 2.5E-10 76.5 5.4 112 117-239 21-163 (842)
396 PRK11537 putative GTP-binding 97.9 6.3E-05 1.4E-09 70.1 9.8 143 114-264 3-186 (318)
397 PRK12727 flagellar biosynthesi 97.9 0.00014 3.1E-09 71.2 11.9 144 114-271 349-523 (559)
398 PRK11889 flhF flagellar biosyn 97.9 4.6E-05 9.9E-10 71.9 7.9 119 115-240 241-391 (436)
399 PF00448 SRP54: SRP54-type pro 97.9 1.1E-05 2.5E-10 69.8 3.4 72 162-240 83-154 (196)
400 KOG0082 G-protein alpha subuni 97.9 0.00012 2.5E-09 68.2 10.2 76 156-240 188-276 (354)
401 KOG3859 Septins (P-loop GTPase 97.9 8.2E-05 1.8E-09 65.9 8.7 132 115-249 42-199 (406)
402 TIGR03348 VI_IcmF type VI secr 97.9 5.1E-05 1.1E-09 82.6 9.1 122 114-240 110-257 (1169)
403 KOG2423 Nucleolar GTPase [Gene 97.8 3.8E-05 8.3E-10 71.2 6.6 127 188-333 206-332 (572)
404 COG1419 FlhF Flagellar GTP-bin 97.8 8.8E-05 1.9E-09 69.9 8.3 119 115-240 203-352 (407)
405 KOG3887 Predicted small GTPase 97.8 7.6E-05 1.6E-09 64.9 6.9 116 116-241 28-150 (347)
406 PRK14721 flhF flagellar biosyn 97.7 0.00012 2.7E-09 70.2 8.8 145 114-271 190-365 (420)
407 cd03115 SRP The signal recogni 97.7 0.00064 1.4E-08 57.6 12.2 72 162-240 82-153 (173)
408 PRK12724 flagellar biosynthesi 97.7 0.00012 2.6E-09 69.9 8.3 120 115-240 223-373 (432)
409 cd03114 ArgK-like The function 97.7 0.00013 2.9E-09 60.2 7.3 20 118-137 2-21 (148)
410 COG3640 CooC CO dehydrogenase 97.7 0.00011 2.5E-09 63.8 6.9 45 193-239 153-198 (255)
411 KOG2485 Conserved ATP/GTP bind 97.7 3.1E-05 6.7E-10 69.9 3.5 138 166-329 25-164 (335)
412 KOG1534 Putative transcription 97.7 0.0001 2.3E-09 62.8 6.0 77 163-241 98-179 (273)
413 PRK12726 flagellar biosynthesi 97.7 0.00015 3.2E-09 68.3 7.7 119 115-240 206-356 (407)
414 COG1618 Predicted nucleotide k 97.6 0.0036 7.8E-08 51.5 14.5 144 116-283 6-176 (179)
415 PRK12723 flagellar biosynthesi 97.6 0.00047 1E-08 65.8 11.0 150 114-275 173-356 (388)
416 cd00066 G-alpha G protein alph 97.6 0.00026 5.6E-09 66.1 9.1 77 155-240 153-242 (317)
417 PRK13695 putative NTPase; Prov 97.6 0.0028 6E-08 53.7 13.6 87 181-282 82-172 (174)
418 cd02038 FleN-like FleN is a me 97.5 0.0012 2.6E-08 53.8 10.5 101 119-239 4-110 (139)
419 smart00275 G_alpha G protein a 97.5 0.00037 8E-09 65.7 7.8 78 154-240 175-265 (342)
420 PRK00771 signal recognition pa 97.5 0.00022 4.9E-09 69.0 6.3 69 163-239 176-245 (437)
421 PRK05703 flhF flagellar biosyn 97.5 0.00037 8.1E-09 67.5 7.7 144 116-271 222-396 (424)
422 PRK10867 signal recognition pa 97.4 0.00078 1.7E-08 65.2 9.8 72 162-240 183-254 (433)
423 PRK06731 flhF flagellar biosyn 97.4 0.00039 8.5E-09 63.1 6.8 119 115-240 75-225 (270)
424 PRK06995 flhF flagellar biosyn 97.4 0.00057 1.2E-08 66.8 7.7 147 115-274 256-434 (484)
425 PF06858 NOG1: Nucleolar GTP-b 97.4 0.00064 1.4E-08 45.6 5.5 44 193-237 11-58 (58)
426 KOG1533 Predicted GTPase [Gene 97.3 0.00017 3.8E-09 62.5 3.2 76 163-240 97-177 (290)
427 TIGR00959 ffh signal recogniti 97.3 0.0015 3.3E-08 63.2 9.6 72 161-239 181-252 (428)
428 PRK14723 flhF flagellar biosyn 97.3 0.00087 1.9E-08 68.7 7.9 121 116-240 186-337 (767)
429 KOG0705 GTPase-activating prot 97.2 0.00075 1.6E-08 65.2 7.0 152 116-282 31-188 (749)
430 PF09547 Spore_IV_A: Stage IV 97.1 0.011 2.5E-07 56.0 12.6 160 116-283 18-234 (492)
431 cd03111 CpaE_like This protein 97.0 0.0044 9.6E-08 47.9 8.3 92 121-235 6-106 (106)
432 PRK01889 GTPase RsgA; Reviewed 97.0 0.00055 1.2E-08 65.0 3.8 55 117-174 197-258 (356)
433 cd02042 ParA ParA and ParB of 96.9 0.0068 1.5E-07 46.5 8.6 72 118-208 2-74 (104)
434 cd01983 Fer4_NifH The Fer4_Nif 96.9 0.0083 1.8E-07 44.7 8.9 71 118-209 2-72 (99)
435 COG3523 IcmF Type VI protein s 96.9 0.0023 5.1E-08 68.4 7.4 118 117-240 127-270 (1188)
436 cd02036 MinD Bacterial cell di 96.9 0.0073 1.6E-07 51.0 9.0 65 164-240 64-128 (179)
437 PF00004 AAA: ATPase family as 96.8 0.0062 1.4E-07 48.5 7.7 21 118-138 1-21 (132)
438 KOG0780 Signal recognition par 96.8 0.005 1.1E-07 57.4 7.7 93 114-209 100-227 (483)
439 PF08433 KTI12: Chromatin asso 96.8 0.029 6.3E-07 51.0 12.7 145 117-284 3-175 (270)
440 KOG0446 Vacuolar sorting prote 96.8 0.0011 2.3E-08 67.5 3.7 129 112-241 26-214 (657)
441 COG0552 FtsY Signal recognitio 96.8 0.0023 5E-08 58.8 5.5 101 161-276 220-328 (340)
442 KOG1191 Mitochondrial GTPase [ 96.7 3.3E-05 7.1E-10 73.7 -7.2 55 117-174 77-131 (531)
443 PRK14737 gmk guanylate kinase; 96.6 0.0014 3.1E-08 56.2 2.9 41 115-155 4-44 (186)
444 PF05621 TniB: Bacterial TniB 96.5 0.014 3.1E-07 53.3 8.7 111 111-235 57-189 (302)
445 PRK14738 gmk guanylate kinase; 96.4 0.0027 6E-08 55.4 3.3 26 114-139 12-37 (206)
446 COG1116 TauB ABC-type nitrate/ 96.3 0.003 6.6E-08 55.8 3.1 23 117-139 31-53 (248)
447 PF13207 AAA_17: AAA domain; P 96.3 0.0034 7.4E-08 49.5 3.2 22 117-138 1-22 (121)
448 cd00009 AAA The AAA+ (ATPases 96.2 0.04 8.6E-07 44.1 9.2 24 116-139 20-43 (151)
449 PF13555 AAA_29: P-loop contai 96.2 0.0045 9.8E-08 42.6 2.9 20 117-136 25-44 (62)
450 COG0194 Gmk Guanylate kinase [ 96.2 0.0027 5.9E-08 53.6 1.8 41 116-157 5-45 (191)
451 TIGR03574 selen_PSTK L-seryl-t 96.1 0.34 7.3E-06 43.5 15.5 20 118-137 2-21 (249)
452 COG0541 Ffh Signal recognition 96.1 0.014 3.1E-07 55.5 6.5 43 162-209 182-226 (451)
453 PF07015 VirC1: VirC1 protein; 96.1 0.023 4.9E-07 50.0 7.3 101 162-276 83-187 (231)
454 TIGR03263 guanyl_kin guanylate 96.1 0.0059 1.3E-07 51.8 3.5 23 117-139 3-25 (180)
455 cd00071 GMPK Guanosine monopho 96.0 0.006 1.3E-07 49.6 3.1 21 118-138 2-22 (137)
456 COG1136 SalX ABC-type antimicr 96.0 0.0057 1.2E-07 53.7 3.1 23 117-139 33-55 (226)
457 PF00005 ABC_tran: ABC transpo 96.0 0.0062 1.3E-07 49.2 3.2 25 116-140 12-36 (137)
458 PF05729 NACHT: NACHT domain 96.0 0.03 6.6E-07 46.3 7.5 22 117-138 2-23 (166)
459 cd02037 MRP-like MRP (Multiple 96.0 0.043 9.3E-07 46.1 8.4 65 161-238 66-133 (169)
460 PRK10751 molybdopterin-guanine 96.0 0.0072 1.6E-07 51.0 3.5 25 114-138 5-29 (173)
461 PF03205 MobB: Molybdopterin g 95.9 0.0065 1.4E-07 49.5 3.0 23 116-138 1-23 (140)
462 COG4088 Predicted nucleotide k 95.9 0.023 4.9E-07 48.9 6.2 108 117-238 3-112 (261)
463 COG3840 ThiQ ABC-type thiamine 95.9 0.0067 1.5E-07 51.1 2.9 24 117-140 27-50 (231)
464 PRK07261 topology modulation p 95.8 0.0071 1.5E-07 51.1 3.1 21 117-137 2-22 (171)
465 PRK04195 replication factor C 95.8 0.16 3.5E-06 50.4 13.1 23 116-138 40-62 (482)
466 cd02019 NK Nucleoside/nucleoti 95.8 0.0083 1.8E-07 42.4 2.9 21 118-138 2-22 (69)
467 PRK08181 transposase; Validate 95.8 0.019 4E-07 52.2 5.8 22 116-137 107-128 (269)
468 PF13521 AAA_28: AAA domain; P 95.8 0.0052 1.1E-07 51.4 2.1 22 117-138 1-22 (163)
469 cd03110 Fer4_NifH_child This p 95.8 0.064 1.4E-06 45.5 8.7 67 161-240 91-157 (179)
470 PRK08118 topology modulation p 95.7 0.0089 1.9E-07 50.3 3.1 22 117-138 3-24 (167)
471 TIGR00235 udk uridine kinase. 95.7 0.01 2.2E-07 51.8 3.5 25 114-138 5-29 (207)
472 KOG2203 GTP-binding protein [G 95.7 0.0084 1.8E-07 58.2 3.1 57 117-173 39-98 (772)
473 PF00503 G-alpha: G-protein al 95.7 0.013 2.9E-07 56.3 4.6 75 156-239 228-316 (389)
474 PF13671 AAA_33: AAA domain; P 95.7 0.0092 2E-07 48.4 3.0 20 118-137 2-21 (143)
475 COG0563 Adk Adenylate kinase a 95.6 0.0098 2.1E-07 50.6 3.0 22 117-138 2-23 (178)
476 PRK00300 gmk guanylate kinase; 95.6 0.014 3E-07 50.7 4.0 23 116-138 6-28 (205)
477 smart00382 AAA ATPases associa 95.6 0.013 2.7E-07 46.6 3.4 24 116-139 3-26 (148)
478 PF13238 AAA_18: AAA domain; P 95.6 0.011 2.3E-07 46.9 2.9 21 118-138 1-21 (129)
479 PRK08233 hypothetical protein; 95.5 0.012 2.7E-07 49.8 3.4 24 115-138 3-26 (182)
480 COG1126 GlnQ ABC-type polar am 95.5 0.012 2.5E-07 51.0 3.1 25 115-139 28-52 (240)
481 PF02263 GBP: Guanylate-bindin 95.5 0.018 4E-07 52.1 4.6 59 117-175 23-86 (260)
482 cd02032 Bchl_like This family 95.5 0.11 2.5E-06 47.1 9.8 19 117-135 2-20 (267)
483 PHA02518 ParA-like protein; Pr 95.5 0.14 2.9E-06 44.5 10.0 66 162-239 76-146 (211)
484 PRK05480 uridine/cytidine kina 95.5 0.013 2.9E-07 51.1 3.4 25 114-138 5-29 (209)
485 PRK14530 adenylate kinase; Pro 95.4 0.014 3E-07 51.3 3.5 23 115-137 3-25 (215)
486 TIGR01360 aden_kin_iso1 adenyl 95.4 0.014 3.1E-07 49.8 3.3 23 115-137 3-25 (188)
487 cd00820 PEPCK_HprK Phosphoenol 95.4 0.015 3.2E-07 44.9 3.0 20 117-136 17-36 (107)
488 KOG3347 Predicted nucleotide k 95.3 0.012 2.7E-07 47.7 2.5 25 113-137 5-29 (176)
489 cd01130 VirB11-like_ATPase Typ 95.3 0.016 3.4E-07 49.7 3.3 24 115-138 25-48 (186)
490 PF05879 RHD3: Root hair defec 95.3 0.012 2.7E-07 61.1 3.1 83 121-203 1-88 (742)
491 cd03222 ABC_RNaseL_inhibitor T 95.3 0.014 3E-07 49.6 2.9 24 116-139 26-49 (177)
492 TIGR02322 phosphon_PhnN phosph 95.3 0.015 3.2E-07 49.4 3.0 22 117-138 3-24 (179)
493 PRK10078 ribose 1,5-bisphospho 95.3 0.015 3.3E-07 49.7 3.1 22 117-138 4-25 (186)
494 cd03225 ABC_cobalt_CbiO_domain 95.2 0.016 3.4E-07 50.6 3.2 23 117-139 29-51 (211)
495 cd03238 ABC_UvrA The excision 95.2 0.016 3.5E-07 49.2 3.1 22 116-137 22-43 (176)
496 TIGR00960 3a0501s02 Type II (G 95.2 0.016 3.5E-07 50.8 3.1 24 116-139 30-53 (216)
497 cd02023 UMPK Uridine monophosp 95.2 0.015 3.2E-07 50.4 2.8 21 118-138 2-22 (198)
498 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.2 0.017 3.6E-07 50.8 3.2 24 116-139 31-54 (218)
499 cd03261 ABC_Org_Solvent_Resist 95.2 0.017 3.7E-07 51.4 3.2 23 117-139 28-50 (235)
500 TIGR01166 cbiO cobalt transpor 95.2 0.018 3.8E-07 49.5 3.1 23 117-139 20-42 (190)
No 1
>COG1159 Era GTPase [General function prediction only]
Probab=100.00 E-value=2.4e-53 Score=374.52 Aligned_cols=249 Identities=43% Similarity=0.667 Sum_probs=234.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 112 ~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
.++++.|+++|.||||||||+|+|+|.+.+++|+.++|||+.+.+++..+..++.|+||||+. .+.+.+.+.+++.++.
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih-~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIH-KPKHALGELMNKAARS 81 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCC-CcchHHHHHHHHHHHH
Confidence 458889999999999999999999999999999999999999999999999999999999994 5578899999999999
Q ss_pred hccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhH-HHHHHHHHHhcCCCCcEEEcccCCCCC
Q 017937 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSAk~g~g 270 (363)
.+.++|+++||+|+.+++...++++.+.++. .+.|+++++||+|+..+.. +....+.+.....+..++++||++|.|
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n 159 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN 159 (298)
T ss_pred HhccCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence 9999999999999999888888888888876 6789999999999987776 567777777778888999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCCeeEEEEEEEEeeCC
Q 017937 271 VEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNS 350 (363)
Q Consensus 271 i~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~~~~~~~i~~~i~~~~~~ 350 (363)
++.|.+.+...+++++++||+++++++|+||+++|++||+++..+++|+||++.+.+..|+.++++.++|++.|+|+|+|
T Consensus 160 ~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~Ver~s 239 (298)
T COG1159 160 VDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIYVERES 239 (298)
T ss_pred HHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred ceeEEecCCCCCC
Q 017937 351 QKIILIGKVSPFL 363 (363)
Q Consensus 351 q~~ivig~~G~~~ 363 (363)
||.||||++|+||
T Consensus 240 QK~IiIGk~G~~i 252 (298)
T COG1159 240 QKGIIIGKNGAMI 252 (298)
T ss_pred ccceEECCCcHHH
Confidence 9999999999986
No 2
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=100.00 E-value=3.6e-47 Score=346.74 Aligned_cols=244 Identities=39% Similarity=0.558 Sum_probs=211.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
++|+++|.||||||||+|+|++.++..+++.++||++...+....++.++.+|||||+... ...+...+.+.+..++..
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~-~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK-KHSLNRLMMKEARSAIGG 79 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC-cchHHHHHHHHHHHHHhh
Confidence 3799999999999999999999998888999999999888887777789999999997433 344556666777788999
Q ss_pred cceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHH
Q 017937 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (363)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~ 275 (363)
+|++++|+|+++..... ..+...+.. .+.|+++|+||+|+............+....++.+++++||++|.|+++|+
T Consensus 80 aDvvl~VvD~~~~~~~~-~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG-EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLA 156 (270)
T ss_pred CCEEEEEEECCCCCchH-HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence 99999999998765443 455555554 578999999999998665554444444444455589999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCCeeEEEEEEEEeeCCceeEE
Q 017937 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIIL 355 (363)
Q Consensus 276 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~~~~~~~i~~~i~~~~~~q~~iv 355 (363)
++|.+.++++||.||.++.++++.+++++|++||++|..+++|+||++.+.+..|++++++.++|.+.|+|+|+|||.||
T Consensus 157 ~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~v~~~s~k~ii 236 (270)
T TIGR00436 157 AFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALISVERESQKKII 236 (270)
T ss_pred HHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEEECcCCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999988778899999999999999999
Q ss_pred ecCCCCCC
Q 017937 356 IGKVSPFL 363 (363)
Q Consensus 356 ig~~G~~~ 363 (363)
||++|+||
T Consensus 237 ig~~g~~i 244 (270)
T TIGR00436 237 IGKNGSMI 244 (270)
T ss_pred EcCCcHHH
Confidence 99999986
No 3
>PRK15494 era GTPase Era; Provisional
Probab=100.00 E-value=4.1e-47 Score=355.59 Aligned_cols=246 Identities=32% Similarity=0.491 Sum_probs=214.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|||||||+|+|++.++..+++.+++|++...+.+..++.++.+|||||+. ..+..+...+.+.+..++
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~-~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIF-EPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcC-CCcccHHHHHHHHHHHHh
Confidence 6679999999999999999999999988888999999988888888888999999999973 334556666667777778
Q ss_pred cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHH
Q 017937 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~e 273 (363)
..||+++||+|+.+++.....++...++. .+.|.++|+||+|+... ...+..+.+........+|++||++|.|+++
T Consensus 130 ~~aDvil~VvD~~~s~~~~~~~il~~l~~--~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAktg~gv~e 206 (339)
T PRK15494 130 HSADLVLLIIDSLKSFDDITHNILDKLRS--LNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISALSGKNIDG 206 (339)
T ss_pred hhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEeccCccCHHH
Confidence 99999999999988777776666666554 45788899999999754 3444445544444446799999999999999
Q ss_pred HHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCCeeEEEEEEEEeeCCcee
Q 017937 274 IRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKI 353 (363)
Q Consensus 274 L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~~~~~~~i~~~i~~~~~~q~~ 353 (363)
++++|.+.++++||+||++++|+++.+++++|+|||++|..+++||||++.+.+..|++.+++.++|.+.|+|+|+|||.
T Consensus 207 L~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~v~~~sqk~ 286 (339)
T PRK15494 207 LLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSRESYKT 286 (339)
T ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEEECCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999876778999999999999999
Q ss_pred EEecCCCCCC
Q 017937 354 ILIGKVSPFL 363 (363)
Q Consensus 354 ivig~~G~~~ 363 (363)
||||++|+||
T Consensus 287 iiiG~~g~~i 296 (339)
T PRK15494 287 IILGKNGSKI 296 (339)
T ss_pred EEEcCCcHHH
Confidence 9999999986
No 4
>PRK00089 era GTPase Era; Reviewed
Probab=100.00 E-value=3.2e-44 Score=331.58 Aligned_cols=246 Identities=43% Similarity=0.670 Sum_probs=216.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
++++.|+++|.||||||||+|+|++.++..++..+++|+....+....++.++.+|||||+.. ....+...+...+...
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~-~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHK-PKRALNRAMNKAAWSS 81 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCC-chhHHHHHHHHHHHHH
Confidence 478899999999999999999999999988899999999988888777778999999999843 3344556666777778
Q ss_pred ccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC-ChhHHHHHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
+..+|++++|+|++++......++...+.. .+.|+++|+||+|+. ....+......+....++.+++++||++|.|+
T Consensus 82 ~~~~D~il~vvd~~~~~~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred HhcCCEEEEEEeCCCCCChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 899999999999998666666666666654 578999999999998 44556666666666556678999999999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCCeeEEEEEEEEeeCCc
Q 017937 272 EDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQ 351 (363)
Q Consensus 272 ~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~~~~~~~i~~~i~~~~~~q 351 (363)
++|+++|.+.+++++|.||.++.++++.++++.|++||+++..+++|+||++.+.+..|++. +.++|++.|+|+++||
T Consensus 160 ~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~--~~~~i~~~i~v~~~~~ 237 (292)
T PRK00089 160 DELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEER--GLVRIEATIYVERDSQ 237 (292)
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC--CeEEEEEEEEEccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999996 5788999999999999
Q ss_pred eeEEecCCCCCC
Q 017937 352 KIILIGKVSPFL 363 (363)
Q Consensus 352 ~~ivig~~G~~~ 363 (363)
+.||||++|+||
T Consensus 238 k~i~ig~~g~~i 249 (292)
T PRK00089 238 KGIIIGKGGAML 249 (292)
T ss_pred eeEEEeCCcHHH
Confidence 999999999986
No 5
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-43 Score=305.24 Aligned_cols=250 Identities=46% Similarity=0.727 Sum_probs=212.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh---hhHHHHHHHHH
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI---HMLDSMMMKNV 189 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~---~~~~~~~~~~~ 189 (363)
.++..|+++|.||||||||.|.++|.+++.++.+..||++.+.++++.+..++.|+||||++.... +.+...+.+..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 377899999999999999999999999999999999999999999999999999999999876443 23333455678
Q ss_pred HhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-------------H----HHHHHHH
Q 017937 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------A----KKLEWYE 252 (363)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-------------~----~~~~~~~ 252 (363)
+.++..||++++|+|+++.-....-.++..++.+ .+.|-++|+||+|......+ . ++.+.+.
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~ 228 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFT 228 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhc
Confidence 8889999999999999965444444444444333 67899999999998754321 1 1111111
Q ss_pred h------------cCCCCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCC
Q 017937 253 K------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVP 320 (363)
Q Consensus 253 ~------------~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp 320 (363)
. +.++..+|.+||++|+||++|.+||...++++||.||.+..++++.++++.|++||++++.+++|||
T Consensus 229 ~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~pqEVP 308 (379)
T KOG1423|consen 229 DVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHLPQEVP 308 (379)
T ss_pred cCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHhhCccccC
Confidence 1 2235579999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEEEecCCCeeEEEEEEEEeeCCceeEEecCCCCCC
Q 017937 321 YACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKVSPFL 363 (363)
Q Consensus 321 ~s~~i~~~~~~~~~~~~~~i~~~i~~~~~~q~~ivig~~G~~~ 363 (363)
|.+++++..|++.+++.+.|.+++.|.+++|++++||++|.+|
T Consensus 309 Y~lq~~i~~w~e~~~g~l~I~~~v~~pK~s~~klliGkgG~ki 351 (379)
T KOG1423|consen 309 YNLQVRILSWKERPAGVLFIQVEVVCPKNSQKKLLIGKGGKKI 351 (379)
T ss_pred cceEEEEEEeeecCCcEEEEEEEEEcCCCcceeEEEcCCCccH
Confidence 9999999999999999999999999999999999999999876
No 6
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=2.8e-33 Score=260.51 Aligned_cols=226 Identities=32% Similarity=0.450 Sum_probs=187.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
+.|+|+|.||||||||+|+|++.+.+++++.||+|++...+...+.+..+.++||+|+.......+.+.+..++..++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999996555567888888999999999
Q ss_pred cceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHH
Q 017937 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (363)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~ 275 (363)
||++|||+|+..+....+..+.++++. .++|+++|+||+|-...+. ...+.+. .++..++++||.+|.|+.+|+
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~--~~kpviLvvNK~D~~~~e~--~~~efys--lG~g~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRR--SKKPVILVVNKIDNLKAEE--LAYEFYS--LGFGEPVPISAEHGRGIGDLL 157 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEEcccCchhhh--hHHHHHh--cCCCCceEeehhhccCHHHHH
Confidence 999999999999999999999999985 7899999999999874332 2223332 356689999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec------C-CCeeEEEEEEEEee
Q 017937 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------P-TAKDFIQVEIVVEK 348 (363)
Q Consensus 276 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~------~-~~~~~i~~~i~~~~ 348 (363)
+.+.+.++ .+...+.+.. ..+. ++...++||+|||+++|.+.++++ + +|.+.|+ +.+++
T Consensus 158 d~v~~~l~-~~e~~~~~~~-~~~i----------kiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~--~~~e~ 223 (444)
T COG1160 158 DAVLELLP-PDEEEEEEEE-TDPI----------KIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSID--IEFER 223 (444)
T ss_pred HHHHhhcC-Cccccccccc-CCce----------EEEEEeCCCCCchHHHHHhccCceEEecCCCCcccccee--eeEEE
Confidence 99999996 3221111110 1111 344567999999999999999987 2 4667787 55589
Q ss_pred CCceeEEecCCCC
Q 017937 349 NSQKIILIGKVSP 361 (363)
Q Consensus 349 ~~q~~ivig~~G~ 361 (363)
++|++.+|+|.|-
T Consensus 224 ~~~~~~liDTAGi 236 (444)
T COG1160 224 DGRKYVLIDTAGI 236 (444)
T ss_pred CCeEEEEEECCCC
Confidence 9999999999994
No 7
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.95 E-value=2e-27 Score=225.44 Aligned_cols=191 Identities=24% Similarity=0.269 Sum_probs=147.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC-eeEEEEeCCCCchhhhh--hHHHHHHHHHHhhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIH--MLDSMMMKNVRSAG 193 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~l~DtpG~~~~~~~--~~~~~~~~~~~~~~ 193 (363)
.|+|+|.||||||||+|+|++.+. .++.+|+||+.+..+.+...+ ..+.++||||+...... .+.. .+...+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~----~~l~~i 235 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGI----RFLKHL 235 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHH----HHHHHH
Confidence 699999999999999999998775 689999999999999887765 46999999998643221 1222 233457
Q ss_pred cccceEEEEeeCCCC----CchHHHHHHHhccccC---CCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCC-CcEEEccc
Q 017937 194 INADCIVVLVDACKA----PERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV-DEVIPVSA 265 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~----~~~~~~~~~~~~~~~~---~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~-~~i~~vSA 265 (363)
..+|++++|+|++.. .......+.+.+.... .++|+++|+||+|+.....+.+....+....+. .+++++||
T Consensus 236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA 315 (390)
T PRK12298 236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISA 315 (390)
T ss_pred HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEEC
Confidence 899999999998721 1111223333333221 368999999999998766555444444333232 36899999
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHH
Q 017937 266 KYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIF 312 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~ 312 (363)
+++.|+++|+++|.+.++..+++||+++.++++.+++++|++||++.
T Consensus 316 ~tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~~ 362 (390)
T PRK12298 316 ASGLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLE 362 (390)
T ss_pred CCCcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999985
No 8
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.95 E-value=4.1e-27 Score=219.96 Aligned_cols=210 Identities=28% Similarity=0.316 Sum_probs=158.6
Q ss_pred hccccccccccCcC-CCcCCccccccccCCcCc-CCCCCCchhhhhcccCCCCCCCCcEEEEEcCCCCChHHHHHHHhcc
Q 017937 61 WSNQREMDLDDGDE-MEFDDASSFLSLSEKPDR-NMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 61 ~~~~~e~~~~~~e~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
....+|+.+||.|+ .+......+...++.... ....+.....+... ....+|+++|.||||||||+|+|++.
T Consensus 167 ~~a~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~il------r~G~kvvIiG~PNvGKSSLLNaL~~~ 240 (454)
T COG0486 167 LLAQVEANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKIL------REGLKVVIIGRPNVGKSSLLNALLGR 240 (454)
T ss_pred HHHHheEeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh------hcCceEEEECCCCCcHHHHHHHHhcC
Confidence 45678999999876 444333333332222111 11111111111111 13448999999999999999999999
Q ss_pred ccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHH
Q 017937 139 KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE 218 (363)
Q Consensus 139 ~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~ 218 (363)
+.++|++.|||||+.+...+..+|+.+.++||+|+. +..+.+.+.++++.+..+..||+++||+|++.+....+..+..
T Consensus 241 d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiR-et~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~ 319 (454)
T COG0486 241 DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIR-ETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE 319 (454)
T ss_pred CceEecCCCCCccceEEEEEEECCEEEEEEecCCcc-cCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH
Confidence 999999999999999999999999999999999995 6678889999999999999999999999999876555555555
Q ss_pred hccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhCCCC
Q 017937 219 GVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (363)
Q Consensus 219 ~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~ 285 (363)
. ...++|+++|.||+|+..+...... ......+++.+||++|+|++.|.+.|.+.+...
T Consensus 320 ~---~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 320 L---LPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred h---cccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 2 2267999999999999876553322 112233689999999999999999999988765
No 9
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.94 E-value=2.7e-26 Score=224.73 Aligned_cols=223 Identities=25% Similarity=0.314 Sum_probs=165.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
++|+|+|.+|||||||+|+|++.....+...+++|++.........+..+.+|||||+.. ....+...+...+..++..
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~-~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEP-DAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCC-cchhHHHHHHHHHHHHHHh
Confidence 589999999999999999999988777889999999988888888888999999999742 2233555566667778899
Q ss_pred cceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHH
Q 017937 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (363)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~ 275 (363)
||++|||+|++++.......+...++. .++|+++|+||+|+..... +....+. .+...+++|||++|.|+++|+
T Consensus 118 aD~il~VvD~~~~~s~~~~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~~~--~g~~~~~~iSA~~g~gi~eL~ 191 (472)
T PRK03003 118 ADAVLFVVDATVGATATDEAVARVLRR--SGKPVILAANKVDDERGEA--DAAALWS--LGLGEPHPVSALHGRGVGDLL 191 (472)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCccch--hhHHHHh--cCCCCeEEEEcCCCCCcHHHH
Confidence 999999999998776656666666665 6799999999999864321 1112222 233356899999999999999
Q ss_pred HHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec------CC-CeeEEEEEEEEee
Q 017937 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PT-AKDFIQVEIVVEK 348 (363)
Q Consensus 276 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~------~~-~~~~i~~~i~~~~ 348 (363)
++|.+.++..+...+. ... . -++...+++++|||+++|.+..... ++ +.+.+... ++.
T Consensus 192 ~~i~~~l~~~~~~~~~---~~~--------~--~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~--~~~ 256 (472)
T PRK03003 192 DAVLAALPEVPRVGSA---SGG--------P--RRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSL--IEL 256 (472)
T ss_pred HHHHhhcccccccccc---ccc--------c--eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEE--EEE
Confidence 9999988653221000 000 1 1456678999999999998876543 22 33444433 345
Q ss_pred CCceeEEecCCC
Q 017937 349 NSQKIILIGKVS 360 (363)
Q Consensus 349 ~~q~~ivig~~G 360 (363)
+++.+.++|++|
T Consensus 257 ~~~~~~l~DTaG 268 (472)
T PRK03003 257 GGKTWRFVDTAG 268 (472)
T ss_pred CCEEEEEEECCC
Confidence 677889999999
No 10
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.93 E-value=9.9e-26 Score=219.32 Aligned_cols=223 Identities=34% Similarity=0.425 Sum_probs=168.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
+|+++|.+|||||||+|+|++.....++..+++|++.......+.+..+.+|||||+.. ....+...+...+..++..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~-~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEE-DDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCC-cchhHHHHHHHHHHHHHhhC
Confidence 48999999999999999999998877899999999988888888889999999999743 23445566667778889999
Q ss_pred ceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHH
Q 017937 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (363)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~ 276 (363)
|++++|+|+..+....+..+..+++. .++|+++|+||+|+....... .+ +. ..++.+++++||++|.|++++++
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l~~--~~~piilVvNK~D~~~~~~~~--~~-~~-~lg~~~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRK--SGKPVILVANKIDGKKEDAVA--AE-FY-SLGFGEPIPISAEHGRGIGDLLD 153 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHH--hCCCEEEEEECccCCcccccH--HH-HH-hcCCCCeEEEeCCcCCChHHHHH
Confidence 99999999998887777777777766 679999999999997544321 11 22 23555789999999999999999
Q ss_pred HHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec------CC-CeeEEEEEEEEeeC
Q 017937 277 WILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PT-AKDFIQVEIVVEKN 349 (363)
Q Consensus 277 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~------~~-~~~~i~~~i~~~~~ 349 (363)
++.+.++......... ..+ + ++...+++++|||+++|.+.+... ++ +.+.+. ..++..
T Consensus 154 ~i~~~l~~~~~~~~~~---~~~--------~--~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~--~~~~~~ 218 (429)
T TIGR03594 154 AILELLPEEEEEEEEE---DGP--------I--KIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSID--IPFERN 218 (429)
T ss_pred HHHHhcCccccccccc---CCc--------e--EEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEe--EEEEEC
Confidence 9999886532111000 000 1 355667999999999988766442 22 223333 334557
Q ss_pred CceeEEecCCCC
Q 017937 350 SQKIILIGKVSP 361 (363)
Q Consensus 350 ~q~~ivig~~G~ 361 (363)
++.+.+++++|-
T Consensus 219 ~~~~~liDT~G~ 230 (429)
T TIGR03594 219 GKKYLLIDTAGI 230 (429)
T ss_pred CcEEEEEECCCc
Confidence 788999999993
No 11
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.93 E-value=3.1e-25 Score=226.95 Aligned_cols=226 Identities=26% Similarity=0.365 Sum_probs=169.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
.++|+|+|.+|||||||+|+|++.....++..+++|++.......+.+..+.+|||||+.. ....+...+...+..++.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~-~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA-DVEGIDSAIASQAQIAVS 353 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCC-CCccHHHHHHHHHHHHHH
Confidence 3589999999999999999999988888899999999998888877888999999999742 233455666777778899
Q ss_pred ccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHH
Q 017937 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL 274 (363)
.||++|||+|++++....+..+...++. .++|+++|+||+|+...... ....+. .+...++++||++|.||++|
T Consensus 354 ~aD~iL~VvDa~~~~~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~~--~~~~~~--lg~~~~~~iSA~~g~GI~eL 427 (712)
T PRK09518 354 LADAVVFVVDGQVGLTSTDERIVRMLRR--AGKPVVLAVNKIDDQASEYD--AAEFWK--LGLGEPYPISAMHGRGVGDL 427 (712)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECcccccchhh--HHHHHH--cCCCCeEEEECCCCCCchHH
Confidence 9999999999998877777777777766 78999999999998653221 122222 23345689999999999999
Q ss_pred HHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec------C-CCeeEEEEEEEEe
Q 017937 275 RDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------P-TAKDFIQVEIVVE 347 (363)
Q Consensus 275 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~------~-~~~~~i~~~i~~~ 347 (363)
+++|.+.++..... ....+... . -++...+++++|||+++|.+....+ + ++.+.+.. .+.
T Consensus 428 l~~i~~~l~~~~~~--~~a~~~~~-------~--~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~--~~~ 494 (712)
T PRK09518 428 LDEALDSLKVAEKT--SGFLTPSG-------L--RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDE--IVE 494 (712)
T ss_pred HHHHHHhccccccc--ccccCCCC-------C--cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCccee--EEE
Confidence 99999998653211 00000000 0 1466678999999999998877653 2 23444443 335
Q ss_pred eCCceeEEecCCC
Q 017937 348 KNSQKIILIGKVS 360 (363)
Q Consensus 348 ~~~q~~ivig~~G 360 (363)
..++.+.++|++|
T Consensus 495 ~~~~~~~liDTaG 507 (712)
T PRK09518 495 IDGEDWLFIDTAG 507 (712)
T ss_pred ECCCEEEEEECCC
Confidence 5678889999999
No 12
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=8.5e-25 Score=213.07 Aligned_cols=223 Identities=31% Similarity=0.402 Sum_probs=163.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
++|+++|.+|||||||+|+|.+.....+...+++|++.........+..+.+|||||+... ...+...+...+..++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~-~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPD-DDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCc-chhHHHHHHHHHHHHHHh
Confidence 4899999999999999999999887778899999999888888878899999999997542 122444455566677899
Q ss_pred cceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHH
Q 017937 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (363)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~ 275 (363)
+|++|+|+|++++....+..+..+++. .+.|+++|+||+|+..... ...+. .. .++..++++||++|.|+++++
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~D~~~~~~--~~~~~-~~-lg~~~~~~iSa~~g~gv~~l~ 154 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILRK--SNKPVILVVNKVDGPDEEA--DAYEF-YS-LGLGEPYPISAEHGRGIGDLL 154 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCccchh--hHHHH-Hh-cCCCCCEEEEeeCCCCHHHHH
Confidence 999999999998877776777777766 5799999999999764221 11122 12 234457999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec------CC-CeeEEEEEEEEee
Q 017937 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PT-AKDFIQVEIVVEK 348 (363)
Q Consensus 276 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~------~~-~~~~i~~~i~~~~ 348 (363)
++|............ ...+ + ++...+++++|||+++|.+.+..+ ++ +.+.+. ..++.
T Consensus 155 ~~I~~~~~~~~~~~~----~~~~--------~--~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~--~~~~~ 218 (435)
T PRK00093 155 DAILEELPEEEEEDE----EDEP--------I--KIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSID--TPFER 218 (435)
T ss_pred HHHHhhCCccccccc----cccc--------e--EEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEE--EEEEE
Confidence 999985433211000 0000 1 355678999999999988765542 22 333343 34456
Q ss_pred CCceeEEecCCCC
Q 017937 349 NSQKIILIGKVSP 361 (363)
Q Consensus 349 ~~q~~ivig~~G~ 361 (363)
.++.+.+++++|-
T Consensus 219 ~~~~~~lvDT~G~ 231 (435)
T PRK00093 219 DGQKYTLIDTAGI 231 (435)
T ss_pred CCeeEEEEECCCC
Confidence 7888999999993
No 13
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=3.3e-25 Score=182.77 Aligned_cols=155 Identities=33% Similarity=0.408 Sum_probs=110.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
+|+++|.||||||||+|+|+|.+. .++++||+|.+...+.+...+..+.++|+||+..-......+.....+.. ....
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~-~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~ 79 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ-KVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL-SEKP 79 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE-EEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH-HTSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-eecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh-hcCC
Confidence 799999999999999999999994 47999999999999999988899999999997554333333333222222 3689
Q ss_pred ceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHH
Q 017937 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (363)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~ 276 (363)
|++++|+|+++.... ..+...+.. .++|+++|+||+|+.....+.-..+.+.+..+ .|++++||++|+|+++|++
T Consensus 80 D~ii~VvDa~~l~r~--l~l~~ql~e--~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg-~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 80 DLIIVVVDATNLERN--LYLTLQLLE--LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG-VPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp SEEEEEEEGGGHHHH--HHHHHHHHH--TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT-S-EEEEBTTTTBTHHHHHH
T ss_pred CEEEEECCCCCHHHH--HHHHHHHHH--cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC-CCEEEEEeCCCcCHHHHHh
Confidence 999999999873222 233333444 68999999999998754432211233333334 4899999999999999998
Q ss_pred HH
Q 017937 277 WI 278 (363)
Q Consensus 277 ~i 278 (363)
.|
T Consensus 155 ~I 156 (156)
T PF02421_consen 155 AI 156 (156)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 14
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.91 E-value=3.1e-23 Score=183.34 Aligned_cols=194 Identities=16% Similarity=0.175 Sum_probs=132.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccce-ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
....+|+++|.+|||||||+++++...+.. ..+..+.+..............+.+|||||. ..+..+ +..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~ 81 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ--EKFGGL-------RDG 81 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCc--hhhhhh-------hHH
Confidence 345699999999999999999998777642 2223333333333233345578999999994 444333 234
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
+++.+|++|+|+|.++.. .....|+..+.+. ..+.|+++|+||+|+.......+... +... ...++++|||++|.
T Consensus 82 ~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~-~~~~piilvgNK~Dl~~~~v~~~~~~-~~~~-~~~~~~e~SAk~~~ 158 (219)
T PLN03071 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVT-FHRK-KNLQYYEISAKSNY 158 (219)
T ss_pred HcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhhhhccCCHHHHH-HHHh-cCCEEEEcCCCCCC
Confidence 578999999999998764 3344454443322 35799999999999864221111222 2222 23479999999999
Q ss_pred CHHHHHHHHHhhCC--------CCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCC
Q 017937 270 GVEDIRDWILTKLP--------LGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNE 318 (363)
Q Consensus 270 gi~eL~~~i~~~l~--------~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~e 318 (363)
|++++|++|.+.+. .+++.+++++..+.+......+.+++.....+..+
T Consensus 159 ~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (219)
T PLN03071 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPDD 215 (219)
T ss_pred CHHHHHHHHHHHHHcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999998774 35667777777887777778888888775554443
No 15
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6.4e-24 Score=175.27 Aligned_cols=164 Identities=23% Similarity=0.274 Sum_probs=123.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccccee-cCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
+..||+++|..+||||||+.|+....|... .++.+.-.......+.....++.+|||+| +++++.+.. .|
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAG--QERy~slap-------MY 74 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAG--QERYHSLAP-------MY 74 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCC--ccccccccc-------ce
Confidence 456999999999999999999999888642 33333333333334444558899999999 666777644 45
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
+++|+++|+|+|+++.. .....|+.++.+....+.-+.||+||+||...+.+. +....+....+. .+|++|||||.
T Consensus 75 yRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gl-l~~ETSAKTg~ 153 (200)
T KOG0092|consen 75 YRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGL-LFFETSAKTGE 153 (200)
T ss_pred ecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCC-EEEEEeccccc
Confidence 89999999999999754 667788888877766666778899999998754432 122333333343 79999999999
Q ss_pred CHHHHHHHHHhhCCCCCC
Q 017937 270 GVEDIRDWILTKLPLGPA 287 (363)
Q Consensus 270 gi~eL~~~i~~~l~~~~~ 287 (363)
||+++|..|.+.++....
T Consensus 154 Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 154 NVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred CHHHHHHHHHHhccCccc
Confidence 999999999999987543
No 16
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.91 E-value=3e-23 Score=175.65 Aligned_cols=164 Identities=24% Similarity=0.364 Sum_probs=109.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
|+|+++|.+|||||||+|+|.+..+. +...+++|...........+.++.+|||||+.......-..............
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 47999999999999999999998764 45566777776666666677899999999974211100000000111111234
Q ss_pred cceEEEEeeCCCCCc---hHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHH
Q 017937 196 ADCIVVLVDACKAPE---RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (363)
Q Consensus 196 ad~ii~VvD~~~~~~---~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~ 272 (363)
+|++++|+|+++... .....+...++....+.|+++|+||+|+.....+.. ...+... ...+++++||++|.|++
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~-~~~~~~~-~~~~~~~~Sa~~~~gi~ 157 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE-IEEEEEL-EGEEVLKISTLTEEGVD 157 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH-HHHhhhh-ccCceEEEEecccCCHH
Confidence 689999999986532 111122333333224799999999999987655443 2222222 34579999999999999
Q ss_pred HHHHHHHhhC
Q 017937 273 DIRDWILTKL 282 (363)
Q Consensus 273 eL~~~i~~~l 282 (363)
+++++|.+.+
T Consensus 158 ~l~~~l~~~~ 167 (168)
T cd01897 158 EVKNKACELL 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 17
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.91 E-value=7.4e-23 Score=172.05 Aligned_cols=166 Identities=42% Similarity=0.624 Sum_probs=129.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|+|||||+|++.+.........+.+++..........+..+.+|||||+.... ......+.......+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPK-KKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcch-HHHHHHHHHHHHHHH
Confidence 3568999999999999999999998877677777788877777777777899999999974322 222233444455668
Q ss_pred cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC-ChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHH
Q 017937 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~ 272 (363)
..+|++++|+|++++......++...+.. .+.|+++|+||+|+. ....+.+....+....+..+++++|++++.|++
T Consensus 81 ~~~d~i~~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 158 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEGDEFILELLKK--SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVD 158 (168)
T ss_pred HhCCEEEEEEECCCccCchHHHHHHHHHH--hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChH
Confidence 89999999999998755555566555544 468999999999998 455566666666666556689999999999999
Q ss_pred HHHHHHHhhC
Q 017937 273 DIRDWILTKL 282 (363)
Q Consensus 273 eL~~~i~~~l 282 (363)
+++++|.+.+
T Consensus 159 ~l~~~l~~~~ 168 (168)
T cd04163 159 ELLEEIVKYL 168 (168)
T ss_pred HHHHHHHhhC
Confidence 9999998753
No 18
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=3.8e-23 Score=172.59 Aligned_cols=157 Identities=36% Similarity=0.476 Sum_probs=120.0
Q ss_pred EEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccce
Q 017937 119 AVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (363)
Q Consensus 119 ~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ 198 (363)
+++|.+|||||||+|+|.+......+..+++|+..........+..+.+|||||+..... .+...+...+...+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~-~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE-GISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh-HHHHHHHHHHHHHHHhCCE
Confidence 579999999999999999987666678888888777777777778999999999754322 2344444555666789999
Q ss_pred EEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHH
Q 017937 199 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278 (363)
Q Consensus 199 ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i 278 (363)
+++|+|+.++.......+..+++. .+.|+++|+||+|+....... ..+.. .+..+++++||++|.|+++++++|
T Consensus 80 ii~v~d~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~~---~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 80 ILFVVDGREGLTPADEEIAKYLRK--SKKPVILVVNKVDNIKEEDEA---AEFYS-LGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred EEEEEeccccCCccHHHHHHHHHh--cCCCEEEEEECcccCChHHHH---HHHHh-cCCCCeEEEecccCCCHHHHHHHH
Confidence 999999987765555556566655 569999999999998765431 22222 234478999999999999999999
Q ss_pred HhhC
Q 017937 279 LTKL 282 (363)
Q Consensus 279 ~~~l 282 (363)
.+.+
T Consensus 154 ~~~~ 157 (157)
T cd01894 154 LELL 157 (157)
T ss_pred HhhC
Confidence 8754
No 19
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.91 E-value=7.8e-24 Score=205.45 Aligned_cols=157 Identities=31% Similarity=0.398 Sum_probs=122.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
..+|+++|.+|||||||+|+|++.+...+++.+++|++.....+..++..+.+|||||+.. ....+..........++.
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~-~~~~ie~~gi~~~~~~~~ 293 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE-TDDEVEKIGIERSREAIE 293 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC-CccHHHHHHHHHHHHHHH
Confidence 4589999999999999999999988777889999999988888777889999999999743 223334444455666789
Q ss_pred ccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHH
Q 017937 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL 274 (363)
.+|++++|+|++++.......+... ..+.|+++|+||+|+....... . ....+++++||++|.|+++|
T Consensus 294 ~aD~il~VvD~s~~~s~~~~~~l~~----~~~~piiiV~NK~DL~~~~~~~-------~-~~~~~~i~iSAktg~GI~~L 361 (449)
T PRK05291 294 EADLVLLVLDASEPLTEEDDEILEE----LKDKPVIVVLNKADLTGEIDLE-------E-ENGKPVIRISAKTGEGIDEL 361 (449)
T ss_pred hCCEEEEEecCCCCCChhHHHHHHh----cCCCCcEEEEEhhhccccchhh-------h-ccCCceEEEEeeCCCCHHHH
Confidence 9999999999987654332222222 2578999999999997644322 1 12347899999999999999
Q ss_pred HHHHHhhCCC
Q 017937 275 RDWILTKLPL 284 (363)
Q Consensus 275 ~~~i~~~l~~ 284 (363)
+++|.+.+..
T Consensus 362 ~~~L~~~l~~ 371 (449)
T PRK05291 362 REAIKELAFG 371 (449)
T ss_pred HHHHHHHHhh
Confidence 9999998864
No 20
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.91 E-value=6.8e-23 Score=191.26 Aligned_cols=208 Identities=21% Similarity=0.285 Sum_probs=156.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~--~~~~~~~~~~~~~ 191 (363)
...+|+|+|.||+|||||+|+|++++..++++.+|||++.+...+..++..+.++||+|+..... ..+..........
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 45699999999999999999999999999999999999999999999999999999999854211 1122222344556
Q ss_pred hccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCCh--hHHHHHH---HHHHhcCCCCcEEEcccC
Q 017937 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKL---EWYEKFTDVDEVIPVSAK 266 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~--~~~~~~~---~~~~~~~~~~~i~~vSAk 266 (363)
++..||++++|+|++.+...++..+..+... .+.++++|+||+|+... ....... .....+.++.+++.+||+
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~ 334 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLRIAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISAL 334 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHHHHHHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEec
Confidence 6889999999999999999999988888777 78999999999999865 2333332 333345577899999999
Q ss_pred CCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec
Q 017937 267 YGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR 333 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~ 333 (363)
+|.|+..+++.+.+....... +-..-.+...+...+..+ .+.+.|.-.+.+.-....
T Consensus 335 ~~~~i~~l~~~i~~~~~~~~~---------ri~Ts~LN~~l~~a~~~~-pP~~~~G~r~ki~Ya~q~ 391 (444)
T COG1160 335 TGQGLDKLFEAIKEIYECATR---------RISTSLLNRVLEDAVAKH-PPPVRYGRRLKIKYATQV 391 (444)
T ss_pred CCCChHHHHHHHHHHHHHhcc---------ccCHHHHHHHHHHHHHhC-CCCccCCceEEEEEEecC
Confidence 999999999999887654221 112223444555555444 556665555555554443
No 21
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.90 E-value=1.8e-23 Score=201.82 Aligned_cols=159 Identities=27% Similarity=0.344 Sum_probs=118.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
...+|+++|.||||||||+|+|++.....++..+++|++.....+..++..+.+|||||+.. ....+..........++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~-~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIRE-HADFVERLGIEKSFKAI 280 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCccc-chhHHHHHHHHHHHHHH
Confidence 34589999999999999999999988777899999999988888888889999999999743 22333334445566778
Q ss_pred cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHH
Q 017937 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~e 273 (363)
+.+|++++|+|++++......++. .+.. .++|+++|+||+|+... ... .+....+ .+++.+||++ .||++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~~l~-~~~~--~~~piIlV~NK~Dl~~~-~~~----~~~~~~~-~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDFLII-DLNK--SKKPFILVLNKIDLKIN-SLE----FFVSSKV-LNSSNLSAKQ-LKIKA 350 (442)
T ss_pred hhCCEEEEEEECCCCCChhHHHHH-HHhh--CCCCEEEEEECccCCCc-chh----hhhhhcC-CceEEEEEec-CCHHH
Confidence 999999999999876644333333 3332 47899999999999754 221 1122222 3689999998 58888
Q ss_pred HHHHHHhhCC
Q 017937 274 IRDWILTKLP 283 (363)
Q Consensus 274 L~~~i~~~l~ 283 (363)
+++.|.+.+.
T Consensus 351 ~~~~L~~~i~ 360 (442)
T TIGR00450 351 LVDLLTQKIN 360 (442)
T ss_pred HHHHHHHHHH
Confidence 8877776553
No 22
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.90 E-value=6.3e-23 Score=173.96 Aligned_cols=163 Identities=25% Similarity=0.263 Sum_probs=111.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCe-eEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
.|+++|.+|||||||+|+|.+... .++..+++|.....+.....+. .+.+|||||+...... ...+...+...+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASE--GKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccc--cCCchHHHHHHHHh
Confidence 589999999999999999998765 3566777777666666665555 8999999997421111 00112223334567
Q ss_pred cceEEEEeeCCCCC---chHHHHHHHhcccc--CCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCC
Q 017937 196 ADCIVVLVDACKAP---ERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 196 ad~ii~VvD~~~~~---~~~~~~~~~~~~~~--~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~g 270 (363)
+|++++|+|++++. .....+...+.... ..++|+++|+||+|+.+..........+.......+++++||++|.|
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 99999999998762 33333332222111 13689999999999976655544443333322235799999999999
Q ss_pred HHHHHHHHHhhC
Q 017937 271 VEDIRDWILTKL 282 (363)
Q Consensus 271 i~eL~~~i~~~l 282 (363)
+++++++|.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 23
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.90 E-value=1.7e-22 Score=175.88 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=107.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
.|+++|..|||||||++++....+.. ...+..+.+.....+. .....+.+|||+| ++.+..+ +..+++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~-~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaG--qe~~~~l-------~~~y~~ 71 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCE-ACKSGVGVDFKIKTVELRGKKIRLQIWDTAG--QERFNSI-------TSAYYR 71 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEEEECCEEEEEEEEeCCC--chhhHHH-------HHHHhc
Confidence 68999999999999999999887742 1122222233222233 3347889999999 4444433 445689
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHH-HHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
++|++|+|+|+++.. +....|+.........+.|+++|+||+|+...+++.. ....+.+......+++|||++|.||
T Consensus 72 ~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV 151 (202)
T cd04120 72 SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNV 151 (202)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCH
Confidence 999999999999764 4444444332222235799999999999975443321 2222332222347999999999999
Q ss_pred HHHHHHHHhhCCC
Q 017937 272 EDIRDWILTKLPL 284 (363)
Q Consensus 272 ~eL~~~i~~~l~~ 284 (363)
+++|++|.+.+..
T Consensus 152 ~e~F~~l~~~~~~ 164 (202)
T cd04120 152 DEIFLKLVDDILK 164 (202)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987643
No 24
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=1.4e-22 Score=175.64 Aligned_cols=165 Identities=19% Similarity=0.169 Sum_probs=110.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEE--EEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|||||||++++.+..+......+.+...... ..+......+.+||||| +..+..+ ...+++
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~-------~~~~~~ 72 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAG--QERFRSV-------THAYYR 72 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCC--cHHHHHh-------hHHHcc
Confidence 799999999999999999998876421222222222211 22333457899999999 4333322 334578
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
.+|++|+|+|+++.. .....|+.........+.|+++|+||+|+...+.+ ......+....+ .+++++||++|.|+
T Consensus 73 ~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~-~~~~e~Sa~~~~~v 151 (191)
T cd04112 73 DAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYG-VPFMETSAKTGLNV 151 (191)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence 999999999998753 33344444333322357899999999999643221 111222222223 48999999999999
Q ss_pred HHHHHHHHhhCCCCCCCCCC
Q 017937 272 EDIRDWILTKLPLGPAYYPK 291 (363)
Q Consensus 272 ~eL~~~i~~~l~~~~~~~~~ 291 (363)
++++++|.+.+....+.++.
T Consensus 152 ~~l~~~l~~~~~~~~~~~~~ 171 (191)
T cd04112 152 ELAFTAVAKELKHRKYEQPD 171 (191)
T ss_pred HHHHHHHHHHHHHhccccCC
Confidence 99999999998877665543
No 25
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.5e-22 Score=165.85 Aligned_cols=163 Identities=23% Similarity=0.248 Sum_probs=122.5
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHH
Q 017937 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (363)
Q Consensus 112 ~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 189 (363)
..+..||+++|..+||||||+++++...|.. +..+....+.... .+....+++.+|||+| +++|..+ +
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~-~YqATIGiDFlskt~~l~d~~vrLQlWDTAG--QERFrsl-------i 88 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG--QERFRSL-------I 88 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcc-cccceeeeEEEEEEEEEcCcEEEEEEEeccc--HHHHhhh-------h
Confidence 3455799999999999999999999988752 2222222333332 3344567899999999 7777665 4
Q ss_pred HhhccccceEEEEeeCCCC--CchHHHHHHHhccccCC-CCCEEEEEcCCCCCChhHHHHHHHH-HHhcCCCCcEEEccc
Q 017937 190 RSAGINADCIVVLVDACKA--PERIDEILEEGVGDHKD-KLPILLVLNKKDLIKPGEIAKKLEW-YEKFTDVDEVIPVSA 265 (363)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~--~~~~~~~~~~~~~~~~~-~~piilV~NK~Dl~~~~~~~~~~~~-~~~~~~~~~i~~vSA 265 (363)
..|++++.++|+|+|.++. ++....|+....+.... ++-++||+||.||.+++++...... ..+..+. .++++||
T Consensus 89 psY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a-~f~etsa 167 (221)
T KOG0094|consen 89 PSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNA-EFIETSA 167 (221)
T ss_pred hhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCc-EEEEecc
Confidence 5569999999999999864 47778888887776544 4778999999999988776443322 2223333 7999999
Q ss_pred CCCCCHHHHHHHHHhhCCCC
Q 017937 266 KYGHGVEDIRDWILTKLPLG 285 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l~~~ 285 (363)
++|.||..+|..|...++..
T Consensus 168 k~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 168 KAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred cCCCCHHHHHHHHHHhccCc
Confidence 99999999999999999864
No 26
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.89 E-value=2.4e-22 Score=188.81 Aligned_cols=159 Identities=28% Similarity=0.332 Sum_probs=115.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
++|+++|.+|||||||+|+|++.++ .+++.+++|.+.....+.. ++..+.+|||||+.....+.+.+.+ ..+...+.
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~-~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f-~~tle~~~ 267 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADV-YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAF-RATLEEVR 267 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCce-eeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHH-HHHHHHHH
Confidence 6899999999999999999999874 4678888998877766665 5679999999997443233333333 33445688
Q ss_pred ccceEEEEeeCCCCCchH-HHHHHHhccccC-CCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHH
Q 017937 195 NADCIVVLVDACKAPERI-DEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~-~~~~~~~~~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~ 272 (363)
+||++++|+|++++.... ...+...+.... .+.|+++|+||+|+.+...+.. ... ...+++++||++|.|++
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~----~~~--~~~~~i~iSAktg~GI~ 341 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER----LEE--GYPEAVFVSAKTGEGLD 341 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH----HHh--CCCCEEEEEccCCCCHH
Confidence 999999999998765322 122223333221 4789999999999976543321 111 12368999999999999
Q ss_pred HHHHHHHhhC
Q 017937 273 DIRDWILTKL 282 (363)
Q Consensus 273 eL~~~i~~~l 282 (363)
+|+++|.+.+
T Consensus 342 eL~~~I~~~~ 351 (351)
T TIGR03156 342 LLLEAIAERL 351 (351)
T ss_pred HHHHHHHhhC
Confidence 9999997653
No 27
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.89 E-value=2.8e-22 Score=170.11 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=104.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|||||||+++|....+... .|...... .........+.+|||||. ..+..+ +..++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~--~~t~g~~~--~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~ 74 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVGFNV--ETVTYKNVKFNVWDVGGQ--DKIRPL-------WRHYY 74 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccc--cCCcccce--EEEEECCEEEEEEECCCC--HHHHHH-------HHHHh
Confidence 345899999999999999999987665422 22222211 123346789999999994 333222 34568
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSAk~ 267 (363)
..+|++|||+|+++.. .....++.+.+... ..+.|++||+||+|+.......+....+.. .....+++++||++
T Consensus 75 ~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~ 154 (168)
T cd04149 75 TGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 154 (168)
T ss_pred ccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCC
Confidence 8999999999998753 44445555555432 246899999999998643222222222211 11223689999999
Q ss_pred CCCHHHHHHHHHh
Q 017937 268 GHGVEDIRDWILT 280 (363)
Q Consensus 268 g~gi~eL~~~i~~ 280 (363)
|.|++++|+||.+
T Consensus 155 g~gv~~~~~~l~~ 167 (168)
T cd04149 155 GDGLYEGLTWLSS 167 (168)
T ss_pred CCChHHHHHHHhc
Confidence 9999999999975
No 28
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.89 E-value=2e-22 Score=171.84 Aligned_cols=155 Identities=21% Similarity=0.200 Sum_probs=106.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEE--EEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.++||||||+.++....+.. ....|...... .........+.+|||+| ++.+..+.. .+++
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~~--~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G--~~~~~~~~~-------~~~~ 71 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVSVDGNTVNLGLWDTAG--QEDYNRLRP-------LSYR 71 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CCCCcceeeeEEEEEECCEEEEEEEEECCC--Cccccccch-------hhcC
Confidence 79999999999999999999888742 22222222222 22334457889999999 455544432 3488
Q ss_pred ccceEEEEeeCCCCC--chH-HHHHHHhccccCCCCCEEEEEcCCCCCChhH----------H-HHHHHHHHhcCCCCcE
Q 017937 195 NADCIVVLVDACKAP--ERI-DEILEEGVGDHKDKLPILLVLNKKDLIKPGE----------I-AKKLEWYEKFTDVDEV 260 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~-~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~----------~-~~~~~~~~~~~~~~~i 260 (363)
++|++|+|+|.++.. ... ..|+... +....+.|++||+||+|+.+... + .+....+....+..++
T Consensus 72 ~a~~~ilvyd~~~~~Sf~~~~~~w~~~i-~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 150 (176)
T cd04133 72 GADVFVLAFSLISRASYENVLKKWVPEL-RHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAY 150 (176)
T ss_pred CCcEEEEEEEcCCHHHHHHHHHHHHHHH-HHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEE
Confidence 999999999998754 333 3444443 33235799999999999964321 1 2222333333444469
Q ss_pred EEcccCCCCCHHHHHHHHHhhCC
Q 017937 261 IPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 261 ~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
++|||++|.||+++|+.+.+.+.
T Consensus 151 ~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 151 IECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred EECCCCcccCHHHHHHHHHHHHh
Confidence 99999999999999999998764
No 29
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.89 E-value=3.1e-22 Score=169.96 Aligned_cols=159 Identities=16% Similarity=0.193 Sum_probs=109.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
+|+++|.+|||||||+++|.+..+. .. .+|.......+...+..+.+|||||. ..+. ..+..++..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~~--~~T~~~~~~~~~~~~~~i~l~Dt~G~--~~~~-------~~~~~~~~~a 67 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--QP--IPTIGFNVETVEYKNLKFTIWDVGGK--HKLR-------PLWKHYYLNT 67 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--Cc--CCcCceeEEEEEECCEEEEEEECCCC--hhcc-------hHHHHHhccC
Confidence 5899999999999999999987653 22 22222222334556789999999995 2222 2344557899
Q ss_pred ceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHhc----CCCCcEEEcccCCCC
Q 017937 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----TDVDEVIPVSAKYGH 269 (363)
Q Consensus 197 d~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~----~~~~~i~~vSAk~g~ 269 (363)
|+++||+|++++. .....++...++.. ..+.|+++|+||+|+.......+....+... .....++++||++|.
T Consensus 68 d~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 147 (169)
T cd04158 68 QAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGM 147 (169)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCC
Confidence 9999999998753 44555666655432 1458999999999996543333333332211 112367899999999
Q ss_pred CHHHHHHHHHhhCCCCCCC
Q 017937 270 GVEDIRDWILTKLPLGPAY 288 (363)
Q Consensus 270 gi~eL~~~i~~~l~~~~~~ 288 (363)
||+++|+||.+.+..+++.
T Consensus 148 gv~~~f~~l~~~~~~~~~~ 166 (169)
T cd04158 148 GLYEGLDWLSRQLVAAGVL 166 (169)
T ss_pred CHHHHHHHHHHHHhhcccc
Confidence 9999999999988876653
No 30
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=8.5e-22 Score=166.96 Aligned_cols=165 Identities=25% Similarity=0.306 Sum_probs=118.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHHHHHHHHHHhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSA 192 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~--~~~~~~~~~~~~~~ 192 (363)
..+|+++|.+|+|||||+|+|++.........+++++......+...+..+.+|||||+..... ..+...........
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 3489999999999999999999987666677788887776666666677899999999743211 11111111233445
Q ss_pred ccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCCh--hHHHHHHHHHHhcC---CCCcEEEcccCC
Q 017937 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFT---DVDEVIPVSAKY 267 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~--~~~~~~~~~~~~~~---~~~~i~~vSAk~ 267 (363)
+..+|++++|+|+.++.......+...... .+.|+++|+||+|+... .........+.... ...+++++||++
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALT 159 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccC
Confidence 679999999999988765544444444433 56899999999999865 33443344443332 245899999999
Q ss_pred CCCHHHHHHHHHhh
Q 017937 268 GHGVEDIRDWILTK 281 (363)
Q Consensus 268 g~gi~eL~~~i~~~ 281 (363)
|.|++++++++.+.
T Consensus 160 ~~~i~~~~~~l~~~ 173 (174)
T cd01895 160 GQGVDKLFDAIDEV 173 (174)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998764
No 31
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.89 E-value=5.5e-22 Score=167.60 Aligned_cols=158 Identities=20% Similarity=0.203 Sum_probs=105.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
..+|+++|.+|+|||||++++.+..+.... .+..+.+.....+. .....+.+|||||. ..+.. ....+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~~-------~~~~~ 72 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQ-GNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ--ERFRT-------ITQSY 72 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccC-CCccceEEEEEEEEECCEEEEEEEEECCCh--HHHHH-------HHHHH
Confidence 358999999999999999999987664221 12111222222222 22368899999994 33322 23445
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
++.+|++++|+|++++. .....|+.........+.|+++|+||+|+...+.. ......+....+...++++||++|.
T Consensus 73 ~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 152 (165)
T cd01864 73 YRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQ 152 (165)
T ss_pred hccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCC
Confidence 78999999999998754 33344544443322357899999999999754321 1222333334445578999999999
Q ss_pred CHHHHHHHHHhhC
Q 017937 270 GVEDIRDWILTKL 282 (363)
Q Consensus 270 gi~eL~~~i~~~l 282 (363)
|+++++++|.+.+
T Consensus 153 ~v~~~~~~l~~~l 165 (165)
T cd01864 153 NVEEAFLLMATEL 165 (165)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998653
No 32
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.89 E-value=3.3e-22 Score=173.19 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=107.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEE--EEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
..+|+++|.+|||||||++++....+.. ....|...... ..+......+.+|||+| ++.+..+ ...+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G--~e~~~~l-------~~~~ 71 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPK--EYIPTVFDNYSAQTAVDGRTVSLNLWDTAG--QEEYDRL-------RTLS 71 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCc--CCCCceEeeeEEEEEECCEEEEEEEEECCC--chhhhhh-------hhhh
Confidence 3589999999999999999999887742 22222222222 12344457889999999 4555444 3345
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-------------HHHHHHHHhcCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AKKLEWYEKFTDV 257 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-------------~~~~~~~~~~~~~ 257 (363)
++++|++|+|+|++++. +.....|...+.....+.|++||+||+|+...... .+....+....+.
T Consensus 72 ~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 151 (191)
T cd01875 72 YPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHA 151 (191)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 78999999999998764 33332233322222357999999999999643211 0112223333344
Q ss_pred CcEEEcccCCCCCHHHHHHHHHhhCCC
Q 017937 258 DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 258 ~~i~~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
.+++++||++|.||+++|++|.+.+..
T Consensus 152 ~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 152 VKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 589999999999999999999987753
No 33
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.89 E-value=5e-22 Score=169.29 Aligned_cols=154 Identities=20% Similarity=0.290 Sum_probs=105.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|||||||+++|.+..+....++.+.. ...+..++..+.+|||||. ..+. ..+..++
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~l~l~D~~G~--~~~~-------~~~~~~~ 79 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQ----IKTLEYEGYKLNIWDVGGQ--KTLR-------PYWRNYF 79 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc----eEEEEECCEEEEEEECCCC--HHHH-------HHHHHHh
Confidence 5569999999999999999999987654333332221 1222334688999999994 3322 2244558
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccc-cCCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSAk~ 267 (363)
..+|++++|+|++++. .....++..++.. ...+.|+++|+||+|+.......+....+.. .....+++++||++
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04154 80 ESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVT 159 (173)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCC
Confidence 8999999999998763 3333444444332 1257999999999999754333333333321 12345799999999
Q ss_pred CCCHHHHHHHHHh
Q 017937 268 GHGVEDIRDWILT 280 (363)
Q Consensus 268 g~gi~eL~~~i~~ 280 (363)
|.|+++++++|.+
T Consensus 160 g~gi~~l~~~l~~ 172 (173)
T cd04154 160 GEGLLQGIDWLVD 172 (173)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999864
No 34
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.89 E-value=3.8e-22 Score=170.36 Aligned_cols=155 Identities=21% Similarity=0.207 Sum_probs=104.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.+|+++|.+|||||||++++.+..+. .....+....... .+....+.+.+|||+|. ..+..+. ..++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~ 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ--EDYDRLR-------PLSY 70 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEECCCc--cchhhhh-------hhhc
Confidence 38999999999999999999988773 2333333332222 22333478889999994 4443332 2357
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-------------HHHHHHHhcCCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDVD 258 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-------------~~~~~~~~~~~~~ 258 (363)
+.+|++|+|+|++++. ......|...++....+.|+++|+||+|+....... +....+.+..+..
T Consensus 71 ~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~ 150 (175)
T cd01874 71 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAV 150 (175)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCc
Confidence 8999999999998754 333332333333223578999999999986542211 1112223333445
Q ss_pred cEEEcccCCCCCHHHHHHHHHhh
Q 017937 259 EVIPVSAKYGHGVEDIRDWILTK 281 (363)
Q Consensus 259 ~i~~vSAk~g~gi~eL~~~i~~~ 281 (363)
.++++||++|.|++++|+.+++.
T Consensus 151 ~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 151 KYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred EEEEecCCCCCCHHHHHHHHHHH
Confidence 89999999999999999998874
No 35
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.89 E-value=4.2e-22 Score=167.34 Aligned_cols=155 Identities=21% Similarity=0.243 Sum_probs=109.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|++|||||||+++|++.++.. ...+..+.+.....+..+ ...+.+|||||. ..+.. .+..+++
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~--~~~~~-------~~~~~~~ 71 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ--ERFRS-------LIPSYIR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHHhc
Confidence 79999999999999999999988753 455666655554444333 357899999994 33322 2444578
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH-HHHHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
.+|++++|+|++++. .....++.........+.|+++|+||+|+..... ..+.........+ .+++++||++|.|+
T Consensus 72 ~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 150 (161)
T cd01861 72 DSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELN-AMFIETSAKAGHNV 150 (161)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhC-CEEEEEeCCCCCCH
Confidence 999999999998753 4445555555444334699999999999954322 1122222222223 57999999999999
Q ss_pred HHHHHHHHhhC
Q 017937 272 EDIRDWILTKL 282 (363)
Q Consensus 272 ~eL~~~i~~~l 282 (363)
++++++|.+.+
T Consensus 151 ~~l~~~i~~~l 161 (161)
T cd01861 151 KELFRKIASAL 161 (161)
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 36
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.89 E-value=4.4e-22 Score=173.16 Aligned_cols=166 Identities=20% Similarity=0.237 Sum_probs=106.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|||||||++++++.++... ..|.++....... +......+.+|||||+.... ......+......++.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~-~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEE-YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP-GTAGQEWMDPRFRGLR 79 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcc-cCCccccccceeEEEECCEEEEEEEEeCCCcccCC-ccchhHHHHHHHhhhc
Confidence 799999999999999999999887532 2333332322222 23333678899999963221 1122222233444578
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhcccc---CCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~---~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
.+|++|+|+|++++. +....++....... ..++|+++|+||+|+...+... +....+.......++++|||++|
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 999999999998754 22333333332211 2578999999999996532211 11222222122358999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 017937 269 HGVEDIRDWILTKLPL 284 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (363)
.|++++|+.+.+.+..
T Consensus 160 ~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 160 WHILLLFKELLISATT 175 (198)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 9999999999987754
No 37
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.7e-22 Score=166.31 Aligned_cols=162 Identities=19% Similarity=0.168 Sum_probs=121.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce-ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
+..||+++|++|||||.|+.|+.+..+.. ...+.|.........+.+...++.+|||+| ++++. ..+.++
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAG--QERFr-------tit~sy 78 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAG--QERFR-------TITSSY 78 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccc--cHHHh-------hhhHhh
Confidence 44599999999999999999999988752 112222222223334556667899999999 66654 346677
Q ss_pred ccccceEEEEeeCCCC--CchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHH-HHHHHHhcCCCCcEEEcccCCCC
Q 017937 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~--~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
+++|++||+|+|+++. +.....|+.+.-+....++|.++|+||+|+.+.+.+.. ..+.+....+...++++|||.+.
T Consensus 79 YR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~ 158 (205)
T KOG0084|consen 79 YRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDST 158 (205)
T ss_pred ccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCcc
Confidence 9999999999999864 47778888887766667889999999999987655432 22345554555349999999999
Q ss_pred CHHHHHHHHHhhCCC
Q 017937 270 GVEDIRDWILTKLPL 284 (363)
Q Consensus 270 gi~eL~~~i~~~l~~ 284 (363)
||++.|..|...+..
T Consensus 159 NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 159 NVEDAFLTLAKELKQ 173 (205)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999998877654
No 38
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.89 E-value=3.6e-22 Score=168.92 Aligned_cols=155 Identities=21% Similarity=0.238 Sum_probs=105.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEE---EEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI---LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
.+|+++|++|||||||++++.+..+. ...+.+..... ..........+.+|||||. ..+.. .+..+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~ 71 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ--ERFRA-------VTRSY 71 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHH
Confidence 38999999999999999999988764 23333322211 1223334567899999994 33332 23445
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH--HHHHHHHHhcCCCCcEEEcccCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
++.+|++|+|+|++++. .....|+.........+.|+++|+||+|+.....+ .+..... ...+ .+++++||++|
T Consensus 72 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~-~~~~-~~~~e~Sa~~~ 149 (166)
T cd04122 72 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFA-DENG-LLFLECSAKTG 149 (166)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHH-HHcC-CEEEEEECCCC
Confidence 78999999999998754 34445544433222256899999999999754332 2222222 2223 48999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 017937 269 HGVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (363)
.|++++|..+...+.
T Consensus 150 ~~i~e~f~~l~~~~~ 164 (166)
T cd04122 150 ENVEDAFLETAKKIY 164 (166)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999987653
No 39
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.89 E-value=6.2e-22 Score=166.12 Aligned_cols=155 Identities=21% Similarity=0.185 Sum_probs=103.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.+|+++|.+|||||||+++|++..+. .....++....... +......+.+|||||. ..+..+ +..++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~l-------~~~~~ 70 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYSAM-------RDQYM 70 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCC--cchHHH-------HHHHH
Confidence 37999999999999999999988764 23333333322222 2233356789999994 333333 33457
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~g 270 (363)
+.+|++++|+|.++.. .....++....+.. ..+.|+++|+||+|+............+....+ .+++++||++|.|
T Consensus 71 ~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 149 (162)
T cd04138 71 RTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYG-IPYIETSAKTRQG 149 (162)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhC-CeEEEecCCCCCC
Confidence 8899999999998643 33334444433321 257899999999999753222222222222223 3799999999999
Q ss_pred HHHHHHHHHhhC
Q 017937 271 VEDIRDWILTKL 282 (363)
Q Consensus 271 i~eL~~~i~~~l 282 (363)
+++++++|.+.+
T Consensus 150 i~~l~~~l~~~~ 161 (162)
T cd04138 150 VEEAFYTLVREI 161 (162)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 40
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.89 E-value=4.4e-22 Score=167.47 Aligned_cols=155 Identities=19% Similarity=0.206 Sum_probs=103.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.+|+++|.+|||||||++++.+..+. .....++.......+ ......+.+|||||. ..+..+. ..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~ 70 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGT--EQFTAMR-------DLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCc--cccchHH-------HHHh
Confidence 48999999999999999999987764 233333333322222 333467789999994 4444332 3347
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
+.+|++++|+|+++.. .....|+....... ..+.|+++|+||+|+...+.+. +....+....+ .+++++||++|.
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (163)
T cd04136 71 KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG-CPFYETSAKSKI 149 (163)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 8999999999998753 33334433332221 2578999999999996533221 11222222233 589999999999
Q ss_pred CHHHHHHHHHhhC
Q 017937 270 GVEDIRDWILTKL 282 (363)
Q Consensus 270 gi~eL~~~i~~~l 282 (363)
|+++++++|.+.+
T Consensus 150 ~v~~l~~~l~~~~ 162 (163)
T cd04136 150 NVDEVFADLVRQI 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998764
No 41
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.89 E-value=5e-22 Score=167.94 Aligned_cols=155 Identities=23% Similarity=0.260 Sum_probs=100.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCc-eEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
.+|+++|.+|||||||++++++..+.. ...+.. ...............+.+|||||. ..+..+ ...++.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~ 71 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCSKNICTLQITDTTGS--HQFPAM-------QRLSIS 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCcchheEEEEEEECCEEEEEEEEECCCC--CcchHH-------HHHHhh
Confidence 379999999999999999999887642 111211 111112223344578899999995 333333 223467
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHh---ccccCCCCCEEEEEcCCCCCChhHHHH-HHHHHHhcCCCCcEEEcccCCC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEG---VGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~---~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSAk~g 268 (363)
.+|++++|+|+++.. .....++..+ ......+.|+++|+||+|+.....+.. ....+....+ .+++++||++|
T Consensus 72 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~SA~~g 150 (165)
T cd04140 72 KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWN-CAFMETSAKTN 150 (165)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhC-CcEEEeecCCC
Confidence 899999999998754 2233333221 111125689999999999975333221 1122222223 47999999999
Q ss_pred CCHHHHHHHHHhh
Q 017937 269 HGVEDIRDWILTK 281 (363)
Q Consensus 269 ~gi~eL~~~i~~~ 281 (363)
.|++++|++|.++
T Consensus 151 ~~v~~~f~~l~~~ 163 (165)
T cd04140 151 HNVQELFQELLNL 163 (165)
T ss_pred CCHHHHHHHHHhc
Confidence 9999999999865
No 42
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=8.6e-22 Score=191.67 Aligned_cols=169 Identities=25% Similarity=0.286 Sum_probs=129.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~--~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|+|||||+|+|++.+...++..+++|++.....+...+..+.+|||||+..... ..+..........
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 44689999999999999999999988777889999999887777777778999999999743221 1122223334456
Q ss_pred hccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC-ChhHHHHHHHHHHhc---CCCCcEEEcccCC
Q 017937 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~-~~~~~~~~~~~~~~~---~~~~~i~~vSAk~ 267 (363)
+++.||++|+|+|++++.......+...+.. .++|+++|+||+|+. +..........+... .+..+++++||++
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~ 328 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLRIAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALT 328 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCC
Confidence 7889999999999998887766666665554 579999999999998 444344443333322 2456899999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 017937 268 GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (363)
|.|++++++++.+....
T Consensus 329 g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 329 GQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999987643
No 43
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.89 E-value=5e-22 Score=168.24 Aligned_cols=157 Identities=16% Similarity=0.109 Sum_probs=105.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEE--EEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
..+|+++|.+|||||||++++.+.++.. ...+..+.+.. ..........+.+|||||. ..+..+ ...+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~--~~~~~~-------~~~~ 72 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNP-SFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ--ERFRTI-------TTAY 72 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCc-ccccCccceEEEEEEEECCEEEEEEEEeCCch--HHHHHH-------HHHH
Confidence 3589999999999999999999887643 21222222222 2223333468899999994 333322 3345
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCcEEEcccCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
++++|++++|+|++++. .....|+....+....+.|+++|+||+|+..... ..+...... ..+ .+++++||++|
T Consensus 73 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~-~~~~~~Sa~~~ 150 (167)
T cd01867 73 YRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALAD-EYG-IKFLETSAKAN 150 (167)
T ss_pred hCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHH-HcC-CEEEEEeCCCC
Confidence 78999999999998654 2334444443332235789999999999975332 122222222 223 47999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 017937 269 HGVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (363)
.|++++|++|.+.+.
T Consensus 151 ~~v~~~~~~i~~~~~ 165 (167)
T cd01867 151 INVEEAFFTLAKDIK 165 (167)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988753
No 44
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.89 E-value=5e-22 Score=167.94 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=104.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEE--EEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR--ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.+|+++|.+|||||||+++|.+.++... ..+..+... ...........+.+|||||. ..+.. .+..++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~--~~~~~-------~~~~~~ 71 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA-FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQ--ERYRT-------ITTAYY 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEECCCh--HHHHH-------HHHHHc
Confidence 3899999999999999999999887421 122221111 11122333478999999994 33332 234558
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCCCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~g~g 270 (363)
+.+|++++|+|+++.. +....|+....+......|+++|+||+|+.+.... .+....+....+. +++++||++|.|
T Consensus 72 ~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 150 (165)
T cd01865 72 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGF-EFFEASAKENIN 150 (165)
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-EEEEEECCCCCC
Confidence 9999999999998653 33344444433322246899999999999754322 1112222233333 799999999999
Q ss_pred HHHHHHHHHhhCC
Q 017937 271 VEDIRDWILTKLP 283 (363)
Q Consensus 271 i~eL~~~i~~~l~ 283 (363)
+++++++|.+.+.
T Consensus 151 v~~l~~~l~~~~~ 163 (165)
T cd01865 151 VKQVFERLVDIIC 163 (165)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 45
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.89 E-value=1.2e-21 Score=164.89 Aligned_cols=154 Identities=21% Similarity=0.241 Sum_probs=103.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcccccee--cCCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.|+++|.+|||||||+|+|.+...... ...+++|........... +..+.+|||||+ ..+ ...+..++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~--~~~-------~~~~~~~~ 72 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH--EKF-------IKNMLAGA 72 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh--HHH-------HHHHHhhh
Confidence 589999999999999999997542211 223455655544444444 678999999995 222 23344557
Q ss_pred cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH----HHHHHHHHhc-CCCCcEEEcccCCC
Q 017937 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI----AKKLEWYEKF-TDVDEVIPVSAKYG 268 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~----~~~~~~~~~~-~~~~~i~~vSAk~g 268 (363)
..+|++++|+|+++............+... ...|+++|+||+|+...... .+..+.+... ....+++++||++|
T Consensus 73 ~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (164)
T cd04171 73 GGIDLVLLVVAADEGIMPQTREHLEILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTG 151 (164)
T ss_pred hcCCEEEEEEECCCCccHhHHHHHHHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCC
Confidence 899999999999875433322222222221 22499999999999865322 2222333321 12358999999999
Q ss_pred CCHHHHHHHHHh
Q 017937 269 HGVEDIRDWILT 280 (363)
Q Consensus 269 ~gi~eL~~~i~~ 280 (363)
.|+++++++|.+
T Consensus 152 ~~v~~l~~~l~~ 163 (164)
T cd04171 152 EGIEELKEYLDE 163 (164)
T ss_pred cCHHHHHHHHhh
Confidence 999999999864
No 46
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.89 E-value=4.6e-22 Score=169.42 Aligned_cols=157 Identities=15% Similarity=0.141 Sum_probs=104.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEE--EEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.+|+++|.+|||||||++++.+..+.. ....+...... ..+......+.+|||||. ..+..+ +..++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~l-------~~~~~ 71 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPD--YHDPTIEDAYKQQARIDNEPALLDILDTAGQ--AEFTAM-------RDQYM 71 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC--CcCCcccceEEEEEEECCEEEEEEEEeCCCc--hhhHHH-------hHHHh
Confidence 489999999999999999999887742 22222222222 223334467899999994 444333 33457
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccc-cCCCCCEEEEEcCCCCCChhHHHH-HHHHHHhcCCCCcEEEcccCCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
..+|++++|+|+++.. .....|+....+. ...+.|+++|+||+|+.....+.. ....+.+..+ .++++|||++|.
T Consensus 72 ~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sa~~~~ 150 (172)
T cd04141 72 RCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFN-CPFFETSAALRH 150 (172)
T ss_pred hcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhC-CEEEEEecCCCC
Confidence 8999999999998764 3333332222111 125799999999999865433221 1222222223 489999999999
Q ss_pred CHHHHHHHHHhhCCC
Q 017937 270 GVEDIRDWILTKLPL 284 (363)
Q Consensus 270 gi~eL~~~i~~~l~~ 284 (363)
||+++|++|.+.+..
T Consensus 151 ~v~~~f~~l~~~~~~ 165 (172)
T cd04141 151 YIDDAFHGLVREIRR 165 (172)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999977653
No 47
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=5.5e-22 Score=194.43 Aligned_cols=169 Identities=24% Similarity=0.237 Sum_probs=123.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHH--HHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK--NVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~--~~~~ 191 (363)
...+|+++|.+|||||||+|+|++..+..++..+++|++.....+..++..+.+|||||+...........+.. ....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 45699999999999999999999998777889999999887777777788899999999743211111111111 1234
Q ss_pred hccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHH---hcCCCCcEEEcccCCC
Q 017937 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKYG 268 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~i~~vSAk~g 268 (363)
+++.+|++++|+|++++.......+...+.. .++|+++|+||+|+............+. ......+++++||++|
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g 367 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQRVLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTG 367 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCC
Confidence 5789999999999998876555555544444 6799999999999976432222212221 1224468999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 017937 269 HGVEDIRDWILTKLPL 284 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (363)
.|++++++.+.+.+..
T Consensus 368 ~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 368 RAVDKLVPALETALES 383 (472)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987754
No 48
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.88 E-value=6.4e-22 Score=170.66 Aligned_cols=158 Identities=16% Similarity=0.154 Sum_probs=108.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|..|||||||+.++.+..+.. ...+..+.+..... +......+.+|||+|. ..+..+ +..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~--~~~~~l-------~~~ 74 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTES-PYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ--GRFCTI-------FRS 74 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCcceeEEEEEEEEECCEEEEEEEEeCCCc--HHHHHH-------HHH
Confidence 34599999999999999999999876642 11122222222222 2334478899999994 444333 344
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
+++.+|++|+|+|++++. +....|+.++.+. ..+.|++||+||+|+...+.+ .+....+.+..+ .++++|||++|
T Consensus 75 ~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~-~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~-~~~~e~SAk~g 152 (189)
T cd04121 75 YSRGAQGIILVYDITNRWSFDGIDRWIKEIDEH-APGVPKILVGNRLHLAFKRQVATEQAQAYAERNG-MTFFEVSPLCN 152 (189)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccchhccCCCHHHHHHHHHHcC-CEEEEecCCCC
Confidence 578999999999998764 4455555554332 367999999999999653322 112233333333 48999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 017937 269 HGVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (363)
.||+++|++|.+.+.
T Consensus 153 ~~V~~~F~~l~~~i~ 167 (189)
T cd04121 153 FNITESFTELARIVL 167 (189)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998664
No 49
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.88 E-value=4.3e-22 Score=167.91 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=103.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEE--EEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|||||||++++++..+.. ....++.+... ..+......+.+|||||. ..+..+ ...+++
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~--~~~~~~-------~~~~~~ 70 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD--DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQ--EEFSAM-------RDQYMR 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCc--ccchHH-------HHHHHh
Confidence 79999999999999999999877642 22333332222 223334567889999994 333333 233477
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCCCC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g~g 270 (363)
.+|++++|+|+++.. .....|+....+.. ..+.|+++|+||+|+....... .....+....+ .+++++||++|.|
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 149 (164)
T smart00173 71 TGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWG-CPFLETSAKERVN 149 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcC-CEEEEeecCCCCC
Confidence 899999999998753 23333333322221 1468999999999997533211 12222222233 5899999999999
Q ss_pred HHHHHHHHHhhCC
Q 017937 271 VEDIRDWILTKLP 283 (363)
Q Consensus 271 i~eL~~~i~~~l~ 283 (363)
+++++++|.+.+.
T Consensus 150 i~~l~~~l~~~~~ 162 (164)
T smart00173 150 VDEAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 50
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.88 E-value=7.1e-22 Score=168.55 Aligned_cols=155 Identities=19% Similarity=0.163 Sum_probs=102.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEE--EEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.+|+++|.+|||||||+.++++..+. .....+...... .........+.+||||| +..+..+ ...++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~~ 70 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAG--QEDYDRL-------RPLSY 70 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCEEEEEEEEECCC--chhhhhh-------hhhhc
Confidence 38999999999999999999987764 222222222222 22333447789999999 4444333 23357
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH-H------------HHHHHHHHhcCCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-I------------AKKLEWYEKFTDVD 258 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~-~------------~~~~~~~~~~~~~~ 258 (363)
+.+|++|+|+|++++. ......|...+.....+.|+++|+||+|+..... . ......+....+..
T Consensus 71 ~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 150 (174)
T cd01871 71 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 150 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCc
Confidence 8999999999998754 2332223332332235799999999999964321 1 01112222233445
Q ss_pred cEEEcccCCCCCHHHHHHHHHhh
Q 017937 259 EVIPVSAKYGHGVEDIRDWILTK 281 (363)
Q Consensus 259 ~i~~vSAk~g~gi~eL~~~i~~~ 281 (363)
++++|||++|.|++++|+.+.+.
T Consensus 151 ~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 151 KYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEEEecccccCCHHHHHHHHHHh
Confidence 89999999999999999999864
No 51
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.88 E-value=7.7e-22 Score=166.18 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=105.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.+|+++|.+|||||||++++++..+. +....++....... +......+.+|||||. ..+..+ ...++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~ 71 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV--TDYDPTIEDSYTKQCEIDGQWAILDILDTAGQ--EEFSAM-------REQYM 71 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceEEEEEEECCEEEEEEEEECCCC--cchhHH-------HHHHH
Confidence 48999999999999999999987653 44444444333322 3333467889999995 333333 33457
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
+.+|++++|+|+++.. .....|+....+.. ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|.
T Consensus 72 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 150 (164)
T cd04145 72 RTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLK-IPYIETSAKDRL 150 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcC-CcEEEeeCCCCC
Confidence 8899999999998754 33344444433321 2578999999999997543221 11222222233 489999999999
Q ss_pred CHHHHHHHHHhhC
Q 017937 270 GVEDIRDWILTKL 282 (363)
Q Consensus 270 gi~eL~~~i~~~l 282 (363)
|++++|++|.+.+
T Consensus 151 ~i~~l~~~l~~~~ 163 (164)
T cd04145 151 NVDKAFHDLVRVI 163 (164)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999998765
No 52
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.88 E-value=4.8e-22 Score=171.90 Aligned_cols=158 Identities=20% Similarity=0.183 Sum_probs=104.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEE-EEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
+|+++|.+|||||||++++.+..+... ..+....... ..........+.+|||||. ..+..+. ..++..
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~-~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~--~~~~~l~-------~~~~~~ 71 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQV-YEPTVFENYVHDIFVDGLHIELSLWDTAGQ--EEFDRLR-------SLSYAD 71 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCc-cCCcceeeeEEEEEECCEEEEEEEEECCCC--hhccccc-------cccccC
Confidence 799999999999999999999877532 1121111111 1122333468999999994 4433332 234789
Q ss_pred cceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHH-------------HHHHHhcCCCCcE
Q 017937 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-------------LEWYEKFTDVDEV 260 (363)
Q Consensus 196 ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~-------------~~~~~~~~~~~~i 260 (363)
+|++++|+|+++.. ......|...+.....+.|+++|+||+|+......... ...+....+..++
T Consensus 72 a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 151 (189)
T cd04134 72 TDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRY 151 (189)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEE
Confidence 99999999998764 33322223333333357999999999999754432211 1122222344579
Q ss_pred EEcccCCCCCHHHHHHHHHhhCCC
Q 017937 261 IPVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 261 ~~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
++|||++|.|++++|++|.+.+..
T Consensus 152 ~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 152 LECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred EEccCCcCCCHHHHHHHHHHHHhc
Confidence 999999999999999999988764
No 53
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.88 E-value=1.6e-21 Score=162.58 Aligned_cols=154 Identities=31% Similarity=0.445 Sum_probs=116.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
+|+++|++|+|||||+|++.+.........+++|.......+...+..+.+|||||+.... ..+...........+..+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETE-DEIEKIGIERAREAIEEA 81 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCc-chHHHHHHHHHHHHHhhC
Confidence 7999999999999999999998876677888888887766666677899999999974432 222222334455567899
Q ss_pred ceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHH
Q 017937 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (363)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~ 276 (363)
|++++|+|++++........... . .+.|+++|+||+|+...... .......+++++||+++.|++++++
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~--~--~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL--P--ADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh--h--cCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHHHHH
Confidence 99999999997654443333322 2 57999999999999865443 1122345899999999999999999
Q ss_pred HHHhhC
Q 017937 277 WILTKL 282 (363)
Q Consensus 277 ~i~~~l 282 (363)
+|.+.+
T Consensus 151 ~l~~~~ 156 (157)
T cd04164 151 ALLELA 156 (157)
T ss_pred HHHHhh
Confidence 998754
No 54
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=9.2e-22 Score=171.85 Aligned_cols=157 Identities=19% Similarity=0.231 Sum_probs=105.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--Ee-CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+|+++|.+|||||||+++|++..+.. ...+....+..... +. .....+.+|||||. ..+..+ +..++
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~-~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~ 71 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQ-HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ--ERFGGM-------TRVYY 71 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEECCCCEEEEEEEECCCc--hhhhhh-------HHHHh
Confidence 79999999999999999999877642 12222222222222 22 44578899999994 333332 34558
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccc----cCCCCCEEEEEcCCCCCChh--HHHHHHHHHHhcCCCCcEEEccc
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSA 265 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~----~~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~i~~vSA 265 (363)
+++|++|+|+|++++. .....|+..+... ...+.|++||+||+|+.... ...+ ...+....+..+++++||
T Consensus 72 ~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~e~Sa 150 (201)
T cd04107 72 RGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQ-MDQFCKENGFIGWFETSA 150 (201)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHH-HHHHHHHcCCceEEEEeC
Confidence 9999999999998754 3333343332211 12568999999999996321 2222 233333344458999999
Q ss_pred CCCCCHHHHHHHHHhhCCC
Q 017937 266 KYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l~~ 284 (363)
++|.|++++|++|.+.+..
T Consensus 151 k~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 151 KEGINIEEAMRFLVKNILA 169 (201)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 55
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.88 E-value=5.9e-22 Score=167.73 Aligned_cols=158 Identities=19% Similarity=0.242 Sum_probs=104.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccccce-ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
+|+++|.+|||||||+++++...+.. ..+..+................+.+|||||. ..+..+.. .++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~-------~~~~~ 72 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQ--EKFGGLRD-------GYYIG 72 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCC--hhhccccH-------HHhcC
Confidence 79999999999999999998766532 1111122222222223344578999999995 33333322 23678
Q ss_pred cceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHH
Q 017937 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (363)
Q Consensus 196 ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~e 273 (363)
+|++|+|+|++++. .....|+....+. ..+.|+++|+||+|+........... +... ...+++++||++|.|+++
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~-~~~~-~~~~~~e~Sa~~~~~v~~ 149 (166)
T cd00877 73 GQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CGNIPIVLCGNKVDIKDRKVKAKQIT-FHRK-KNLQYYEISAKSNYNFEK 149 (166)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhcccccCCHHHHH-HHHH-cCCEEEEEeCCCCCChHH
Confidence 99999999998754 2333444443332 23799999999999973322122222 2222 345799999999999999
Q ss_pred HHHHHHhhCCCCC
Q 017937 274 IRDWILTKLPLGP 286 (363)
Q Consensus 274 L~~~i~~~l~~~~ 286 (363)
+|++|.+.+...|
T Consensus 150 ~f~~l~~~~~~~~ 162 (166)
T cd00877 150 PFLWLARKLLGNP 162 (166)
T ss_pred HHHHHHHHHHhcc
Confidence 9999998886543
No 56
>PLN03118 Rab family protein; Provisional
Probab=99.88 E-value=6.7e-22 Score=174.03 Aligned_cols=165 Identities=19% Similarity=0.185 Sum_probs=109.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
...+|+++|.+|||||||+++|++..+.......+.+.......+......+.+|||||. ..+..+ ...++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~ 83 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ--ERFRTL-------TSSYY 83 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHHHH
Confidence 456999999999999999999998876533333333222222233344578899999994 343333 33457
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc--CCCCCEEEEEcCCCCCChhHH--HHHHHHHHhcCCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~--~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
+.+|++|+|+|+++.. ......+...+... ..+.|+++|+||+|+.....+ .+...... ..+ .+++++||++
T Consensus 84 ~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~-~~~-~~~~e~SAk~ 161 (211)
T PLN03118 84 RNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK-EHG-CLFLECSAKT 161 (211)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-HcC-CEEEEEeCCC
Confidence 8999999999998753 22222232222211 246799999999999754332 12222222 223 4789999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCCC
Q 017937 268 GHGVEDIRDWILTKLPLGPAYY 289 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~~~~~~ 289 (363)
|.|+++++++|.+.+...+..+
T Consensus 162 ~~~v~~l~~~l~~~~~~~~~~~ 183 (211)
T PLN03118 162 RENVEQCFEELALKIMEVPSLL 183 (211)
T ss_pred CCCHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999887655443
No 57
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.88 E-value=4.1e-22 Score=172.51 Aligned_cols=155 Identities=21% Similarity=0.197 Sum_probs=102.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEE--EEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|||||||+++|.+..+.. ..+.++..... ..+......+.+|||||. ..+..+ ...+++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE--TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQ--EEYTAL-------RDQWIR 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchHhhEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHHHHH
Confidence 58999999999999999999877642 23333322222 223333456889999994 343333 234578
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhcccc---CCCCCEEEEEcCCCCCChhHHHH-HHHHHHhcCCCCcEEEcccCCC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~---~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSAk~g 268 (363)
.+|++|+|+|.++.. .....|+..+.... ..+.|+++|+||+|+.....+.. ....+....+ .+++++||++|
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~SAk~~ 148 (190)
T cd04144 70 EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLG-CEFIEASAKTN 148 (190)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhC-CEEEEecCCCC
Confidence 999999999998754 33344443332211 24689999999999964333211 1122222233 47999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 017937 269 HGVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (363)
.|++++++++.+.+.
T Consensus 149 ~~v~~l~~~l~~~l~ 163 (190)
T cd04144 149 VNVERAFYTLVRALR 163 (190)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 58
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=6.9e-22 Score=184.19 Aligned_cols=164 Identities=26% Similarity=0.269 Sum_probs=117.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
.|+|+|.||||||||+|+|.+.+.. ++.+++||..+..+.+.. +..++.+|||||+....... ..+...+.+.+..
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~--~gLg~~flrhie~ 236 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG--AGLGHRFLKHIER 236 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCc-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc--ccHHHHHHHHhhh
Confidence 6999999999999999999987654 788999999998888876 56789999999986432211 1122334455788
Q ss_pred cceEEEEeeCCCCC--chHHHHHHHhccccC--CCCCEEEEEcCCCCCChhHHHH-HHHHHHhcCCCCcEEEcccCCCCC
Q 017937 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHK--DKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 196 ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~--~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSAk~g~g 270 (363)
|+++++|+|+++.. +....|..++..... .++|+++|+||+|+........ ....+....+ .+++++||++++|
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~-~~i~~iSAktg~G 315 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALG-GPVFLISAVTGEG 315 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcC-CCEEEEEcCCCCC
Confidence 99999999998643 333333333222111 3689999999999976543322 2222222222 4799999999999
Q ss_pred HHHHHHHHHhhCCC
Q 017937 271 VEDIRDWILTKLPL 284 (363)
Q Consensus 271 i~eL~~~i~~~l~~ 284 (363)
+++|+++|.+.+..
T Consensus 316 I~eL~~~L~~~l~~ 329 (335)
T PRK12299 316 LDELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
No 59
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.88 E-value=1.2e-21 Score=168.30 Aligned_cols=158 Identities=22% Similarity=0.274 Sum_probs=104.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|||||||++++++..+.. ...+....+.... ........+.+|||+| +..+..+ +..+++
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G--~~~~~~~-------~~~~~~ 71 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDE-DYIQTLGVNFMEKTISIRGTEITFSIWDLGG--QREFINM-------LPLVCN 71 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCC--chhHHHh-------hHHHCc
Confidence 79999999999999999999887742 1222222222222 2333347789999999 4444332 334588
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCCh----h--HHHHHHHHHHhcCCCCcEEEcccC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP----G--EIAKKLEWYEKFTDVDEVIPVSAK 266 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~----~--~~~~~~~~~~~~~~~~~i~~vSAk 266 (363)
++|++++|+|+++.. .....|+....+......| ++|+||+|+... . .+.+....+....+ .+++++||+
T Consensus 72 ~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~SAk 149 (182)
T cd04128 72 DAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCSTS 149 (182)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEeCC
Confidence 999999999998764 3333455544332224456 688999999521 1 12222333333344 589999999
Q ss_pred CCCCHHHHHHHHHhhCCCCC
Q 017937 267 YGHGVEDIRDWILTKLPLGP 286 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~~~ 286 (363)
+|.|++++|+++.+.+..-|
T Consensus 150 ~g~~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 150 HSINVQKIFKIVLAKAFDLP 169 (182)
T ss_pred CCCCHHHHHHHHHHHHHhcC
Confidence 99999999999998876544
No 60
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.88 E-value=6.5e-22 Score=166.90 Aligned_cols=155 Identities=19% Similarity=0.207 Sum_probs=104.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.+|+++|.+|||||||+++++...+. ...+.++.......+ ......+.+|||||. ..+..+. ..++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~ 70 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT--EQFTAMR-------DLYM 70 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEECCCc--ccchhHH-------HHHH
Confidence 48999999999999999999976653 333444433332222 233466789999994 4444333 3347
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccc-cCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
+.+|++++|+|.++.. +....++...... ...+.|+++|+||+|+.....+. .....+....+ .+++++||++|.
T Consensus 71 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (164)
T cd04175 71 KNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWG-CAFLETSAKAKI 149 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhC-CEEEEeeCCCCC
Confidence 8899999999987643 3344444444332 12578999999999996532211 11122222223 489999999999
Q ss_pred CHHHHHHHHHhhC
Q 017937 270 GVEDIRDWILTKL 282 (363)
Q Consensus 270 gi~eL~~~i~~~l 282 (363)
|+++++.+|.+.+
T Consensus 150 ~v~~~~~~l~~~l 162 (164)
T cd04175 150 NVNEIFYDLVRQI 162 (164)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 61
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.88 E-value=9.5e-22 Score=166.02 Aligned_cols=156 Identities=21% Similarity=0.261 Sum_probs=104.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.+|+++|.+|||||||+++|.+..+.. ...+..+.......+ ......+.+|||||. ..+..+ ...++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~ 73 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNL-DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQ--ERYRAI-------TSAYY 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCh--HHHHHH-------HHHHH
Confidence 489999999999999999999887653 223333333222222 233357899999994 333322 33447
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCCCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~g~g 270 (363)
+.++++++|+|+++.. .....|+.........+.|+++|+||+|+...+.. .+....+....+ .+++++||++|.|
T Consensus 74 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 152 (165)
T cd01868 74 RGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNG-LSFIETSALDGTN 152 (165)
T ss_pred CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcC-CEEEEEECCCCCC
Confidence 8999999999998643 33344444433332246899999999999753321 111222222223 4799999999999
Q ss_pred HHHHHHHHHhhC
Q 017937 271 VEDIRDWILTKL 282 (363)
Q Consensus 271 i~eL~~~i~~~l 282 (363)
+++++++|.+.+
T Consensus 153 v~~l~~~l~~~i 164 (165)
T cd01868 153 VEEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 62
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.88 E-value=7.9e-22 Score=166.78 Aligned_cols=155 Identities=22% Similarity=0.298 Sum_probs=104.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccccc---eecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLS---IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+|+++|++|||||||+++|.+.... .......+|.......+...+..+.+|||||+ ..+. ..+..++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~~~~ 71 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQ--ESLR-------SLWDKYY 71 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCC--hhhH-------HHHHHHh
Confidence 4899999999999999999875321 01122233433333445556789999999995 3222 2244558
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHhcC-----CCCcEEEccc
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT-----DVDEVIPVSA 265 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~-----~~~~i~~vSA 265 (363)
..+|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+.......+....+.... ...+++++||
T Consensus 72 ~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 151 (167)
T cd04160 72 AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSA 151 (167)
T ss_pred CCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeC
Confidence 8999999999998653 22333444443321 25799999999999976543333333333211 2347999999
Q ss_pred CCCCCHHHHHHHHHh
Q 017937 266 KYGHGVEDIRDWILT 280 (363)
Q Consensus 266 k~g~gi~eL~~~i~~ 280 (363)
++|.|++++++||.+
T Consensus 152 ~~g~gv~e~~~~l~~ 166 (167)
T cd04160 152 LEGTGVREGIEWLVE 166 (167)
T ss_pred CCCcCHHHHHHHHhc
Confidence 999999999999975
No 63
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.88 E-value=1.5e-21 Score=164.38 Aligned_cols=154 Identities=13% Similarity=0.149 Sum_probs=104.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|||||||++++.+..+.. ...+....+.....+. .....+.+|||||. ..+..+ ...++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~--~~~~~~-------~~~~~~ 71 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHS-SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQ--ERYQTI-------TKQYYR 71 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEeCCCc--HhHHhh-------HHHHhc
Confidence 79999999999999999999887742 2222222222222222 33467889999994 333332 334578
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
.+|++++|+|+++.. +....|+.........+.|+++|+||+|+.....+ .+....+.+..+ .+++++||++|.|+
T Consensus 72 ~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v 150 (161)
T cd04117 72 RAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG-MDFFETSACTNSNI 150 (161)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 999999999998753 34444444433322246899999999999654432 122233333333 57999999999999
Q ss_pred HHHHHHHHhh
Q 017937 272 EDIRDWILTK 281 (363)
Q Consensus 272 ~eL~~~i~~~ 281 (363)
+++|++|.+.
T Consensus 151 ~~~f~~l~~~ 160 (161)
T cd04117 151 KESFTRLTEL 160 (161)
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 64
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.88 E-value=1.1e-21 Score=168.42 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=105.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEE--EEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
..+|+++|.+|||||||++++.+..+. .....|...... ..+......+.+|||+| ++.+..+. ..+
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~--~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG--~e~~~~~~-------~~~ 73 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSG--SPYYDNVR-------PLS 73 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCC--CccCCceeeeeEEEEEECCEEEEEEEEECCC--chhhHhhh-------hhh
Confidence 458999999999999999999988774 222222222222 22344457899999999 44444432 345
Q ss_pred ccccceEEEEeeCCCCC--chH-HHHHHHhccccCCCCCEEEEEcCCCCCCh------------hHH-HHHHHHHHhcCC
Q 017937 193 GINADCIVVLVDACKAP--ERI-DEILEEGVGDHKDKLPILLVLNKKDLIKP------------GEI-AKKLEWYEKFTD 256 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~-~~~~~~~~~~~~~~~piilV~NK~Dl~~~------------~~~-~~~~~~~~~~~~ 256 (363)
++++|++|+|+|++++. ... ..|+.. ++....+.|++||+||+|+... ..+ .+....+.+..+
T Consensus 74 ~~~ad~~ilvyDit~~~Sf~~~~~~w~~~-i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 152 (182)
T cd04172 74 YPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG 152 (182)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHH-HHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence 88999999999998764 333 233333 3333357899999999998531 011 122334444445
Q ss_pred CCcEEEcccCCCCC-HHHHHHHHHhh
Q 017937 257 VDEVIPVSAKYGHG-VEDIRDWILTK 281 (363)
Q Consensus 257 ~~~i~~vSAk~g~g-i~eL~~~i~~~ 281 (363)
..++++|||++|.| |+++|..+.+.
T Consensus 153 ~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 153 AATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 45899999999998 99999998874
No 65
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.88 E-value=1.7e-21 Score=164.00 Aligned_cols=156 Identities=21% Similarity=0.189 Sum_probs=106.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccce-ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
.+|+++|++|||||||+|+|++.++.. .....+.+.......+......+.+|||||. ..+.. ....+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~--~~~~~-------~~~~~~~ 72 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ--ERYRS-------LAPMYYR 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch--HHHHH-------HHHHHhc
Confidence 489999999999999999999988753 2222232232333334455578899999993 33322 2334578
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChh--HHHHHHHHHHhcCCCCcEEEcccCCCCC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~i~~vSAk~g~g 270 (363)
.+|++++|+|++++. .....++...........|+++|+||+|+.... ........... .+ .+++++||++|.|
T Consensus 73 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~~ 150 (163)
T cd01860 73 GAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADE-NG-LLFFETSAKTGEN 150 (163)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHH-cC-CEEEEEECCCCCC
Confidence 999999999998653 333444444333322568999999999987432 12222222332 23 5799999999999
Q ss_pred HHHHHHHHHhhC
Q 017937 271 VEDIRDWILTKL 282 (363)
Q Consensus 271 i~eL~~~i~~~l 282 (363)
+++++++|.+.+
T Consensus 151 v~~l~~~l~~~l 162 (163)
T cd01860 151 VNELFTEIAKKL 162 (163)
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 66
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.88 E-value=1e-21 Score=165.83 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=104.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEE--EEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|||||||+++|++..+.. ...+....+.. ..........+.+|||||. ..+.. ....+++
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~~~ 71 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH--PEYLE-------VRNEFYK 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCcc--HHHHH-------HHHHHhc
Confidence 79999999999999999999988642 22222222221 2223344578999999994 33322 2334578
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccC-----CCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCcEEEccc
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-----DKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSA 265 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~-----~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA 265 (363)
.+|++|+|+|.+++. .....|+....+... .+.|+++|+||+|+..... ..+...+... .+ .+++++||
T Consensus 72 ~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa 149 (168)
T cd04119 72 DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAES-KG-FKYFETSA 149 (168)
T ss_pred cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHH-cC-CeEEEEEC
Confidence 999999999998753 334444444433221 4689999999999973221 2222222222 23 47999999
Q ss_pred CCCCCHHHHHHHHHhhC
Q 017937 266 KYGHGVEDIRDWILTKL 282 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l 282 (363)
++|.|+++++++|.+.+
T Consensus 150 ~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 150 CTGEGVNEMFQTLFSSI 166 (168)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 67
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.88 E-value=1.1e-21 Score=165.95 Aligned_cols=157 Identities=18% Similarity=0.184 Sum_probs=105.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.+|+++|.+|||||||++++.+..+.. ...+..+.+.....+ ......+.+|||||. ..+..+ ...++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~--~~~~~~-------~~~~~ 72 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRTI-------TSSYY 72 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCc--HhHHHH-------HHHHh
Confidence 489999999999999999999887653 223333322222222 233467899999994 333322 34457
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g~g 270 (363)
+.+|++++|+|+++.. .....|+....+....+.|+++|+||+|+.....+. +....+....+ .+++++||++|.|
T Consensus 73 ~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 151 (166)
T cd01869 73 RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELG-IPFLETSAKNATN 151 (166)
T ss_pred CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcC-CeEEEEECCCCcC
Confidence 8999999999998743 334444444332222568999999999986543221 11222222233 4899999999999
Q ss_pred HHHHHHHHHhhCC
Q 017937 271 VEDIRDWILTKLP 283 (363)
Q Consensus 271 i~eL~~~i~~~l~ 283 (363)
+++++++|.+.+.
T Consensus 152 v~~~~~~i~~~~~ 164 (166)
T cd01869 152 VEQAFMTMAREIK 164 (166)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
No 68
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.88 E-value=2.1e-21 Score=163.13 Aligned_cols=151 Identities=17% Similarity=0.198 Sum_probs=100.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
||+++|.+|||||||++++....+.. ..|. +.... ..+......+.+|||||. ..+. ..+..++++|
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~--~~pt-~g~~~-~~~~~~~~~~~l~D~~G~--~~~~-------~~~~~~~~~a 68 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT--TIPT-IGFNV-ETVEYKNISFTVWDVGGQ--DKIR-------PLWRHYFQNT 68 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc--cCCC-CCcce-EEEEECCEEEEEEECCCC--HhHH-------HHHHHHhcCC
Confidence 79999999999999999997666542 2222 11111 223445788999999995 3322 2344568999
Q ss_pred ceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcccCCCCC
Q 017937 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 197 d~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSAk~g~g 270 (363)
|++|||+|+++.. .....++...+... ..+.|++||+||+|+.......+....+.. ......++++||++|.|
T Consensus 69 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~g 148 (159)
T cd04150 69 QGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDG 148 (159)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCC
Confidence 9999999998753 33444455444321 146899999999999643222222222211 11223578999999999
Q ss_pred HHHHHHHHHh
Q 017937 271 VEDIRDWILT 280 (363)
Q Consensus 271 i~eL~~~i~~ 280 (363)
++++|+||.+
T Consensus 149 v~~~~~~l~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 69
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.88 E-value=1.1e-21 Score=166.39 Aligned_cols=157 Identities=19% Similarity=0.199 Sum_probs=105.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecC-CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
.+|+++|.+|||||||++++.+..+..... ..+.+..............+.+|||||. ..+.. ....+++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~-------~~~~~~~ 75 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ--ESFRS-------ITRSYYR 75 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHHhc
Confidence 489999999999999999999887653222 2222222233333444568999999993 33322 2345578
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH--HHHHHHHHhcCCCCcEEEcccCCCCC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSAk~g~g 270 (363)
.+|++++|+|++++. .....|+....+....+.|+++|+||+|+.....+ .+....... .+ .+++++||++|.|
T Consensus 76 ~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~e~Sa~~~~~ 153 (168)
T cd01866 76 GAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKE-HG-LIFMETSAKTASN 153 (168)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHH-cC-CEEEEEeCCCCCC
Confidence 999999999998643 33444444433322257899999999999743221 222222222 23 4799999999999
Q ss_pred HHHHHHHHHhhCC
Q 017937 271 VEDIRDWILTKLP 283 (363)
Q Consensus 271 i~eL~~~i~~~l~ 283 (363)
++++|.++.+.+.
T Consensus 154 i~~~~~~~~~~~~ 166 (168)
T cd01866 154 VEEAFINTAKEIY 166 (168)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987763
No 70
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.88 E-value=1.9e-21 Score=166.09 Aligned_cols=156 Identities=20% Similarity=0.204 Sum_probs=104.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|||||||++++....+. ...|...... .........+.+|||||. ..+. ..+..++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~t~~~~~--~~~~~~~~~l~l~D~~G~--~~~~-------~~~~~~~ 78 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV--TTIPTIGFNV--ETVTYKNISFTVWDVGGQ--DKIR-------PLWRHYY 78 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCCccccce--EEEEECCEEEEEEECCCC--hhhH-------HHHHHHh
Confidence 3469999999999999999999766553 2222222211 223346688999999994 3332 2345558
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHH---hcCCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~i~~vSAk~ 267 (363)
++||++|+|+|++++. .....++...+... ..+.|++||+||+|+.......+....+. .......++++||++
T Consensus 79 ~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 158 (175)
T smart00177 79 TNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATS 158 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCC
Confidence 9999999999998753 44445555554331 14689999999999965422222222221 111223577899999
Q ss_pred CCCHHHHHHHHHhhC
Q 017937 268 GHGVEDIRDWILTKL 282 (363)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (363)
|.|++++++||.+.+
T Consensus 159 g~gv~e~~~~l~~~~ 173 (175)
T smart00177 159 GDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 71
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.88 E-value=2.3e-21 Score=164.55 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=104.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEE--EEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.+|+++|.+|||||||++++++..+.. ...+..+.... ...+......+.+||||| +..+..+ ...++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G--~~~~~~~-------~~~~~ 75 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAG--QERFRSL-------RTPFY 75 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCc-CcCCceeeEEEEEEEEECCeEEEEEEEeCCC--hHHHHHh-------HHHHh
Confidence 489999999999999999999877642 12222222221 222344557789999999 4443333 33457
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc----CCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~----~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
+.+|++++|+|.+++. .....|+....... ..+.|+++|+||+|+.......+....+....+..+++++||++
T Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 155 (170)
T cd04116 76 RGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKD 155 (170)
T ss_pred cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCC
Confidence 8999999999998654 44444444333211 24689999999999963221112222333333445799999999
Q ss_pred CCCHHHHHHHHHhhC
Q 017937 268 GHGVEDIRDWILTKL 282 (363)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (363)
|.|+.++|+++.+.+
T Consensus 156 ~~~v~~~~~~~~~~~ 170 (170)
T cd04116 156 ATNVAAAFEEAVRRV 170 (170)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998653
No 72
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.88 E-value=9.6e-22 Score=167.47 Aligned_cols=155 Identities=19% Similarity=0.179 Sum_probs=102.5
Q ss_pred EEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 118 i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
|+++|.+|||||||++++.+..+.. ....+........ .......+.+|||||. ..+..+. ..++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~-------~~~~~~ 69 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE--DYVPTVFENYSADVEVDGKPVELGLWDTAGQ--EDYDRLR-------PLSYPD 69 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC--CCCCcEEeeeeEEEEECCEEEEEEEEECCCC--cccchhc-------hhhcCC
Confidence 5899999999999999999987742 2222222222222 2333457899999994 3333332 234789
Q ss_pred cceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH-H------------HHHHHHHHhcCCCCcE
Q 017937 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-I------------AKKLEWYEKFTDVDEV 260 (363)
Q Consensus 196 ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~-~------------~~~~~~~~~~~~~~~i 260 (363)
+|++|+|+|+++.. +.....|...+.....+.|+++|+||+|+..... . .+....+....+..++
T Consensus 70 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 149 (174)
T smart00174 70 TDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKY 149 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEE
Confidence 99999999998753 3332223333333335899999999999965321 1 0111223333444579
Q ss_pred EEcccCCCCCHHHHHHHHHhhCC
Q 017937 261 IPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 261 ~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
++|||++|.|++++|+.+.+.+.
T Consensus 150 ~e~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 150 LECSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred EEecCCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999987653
No 73
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.88 E-value=1.5e-21 Score=164.14 Aligned_cols=154 Identities=18% Similarity=0.210 Sum_probs=104.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCce--EEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT--RHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|||||||+++|.+.++... ..+..+ .......+......+.+|||||+ ..+.. ....+++
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~--~~~~~-------~~~~~~~ 71 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKED-SQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ--ERFRS-------VTRSYYR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeEEEEEEEECCEEEEEEEEECcch--HHHHH-------hHHHHhc
Confidence 799999999999999999998876422 222222 22222233344467899999994 33322 2344578
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH--HHHHHHHHhcCCCCcEEEcccCCCCC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSAk~g~g 270 (363)
.+|++++|+|+++.. .....|+.........+.|+++|+||+|+.....+ .+....... .+ .+++++||++|.|
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~~ 149 (161)
T cd04113 72 GAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQE-NG-LLFLETSALTGEN 149 (161)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHH-cC-CEEEEEECCCCCC
Confidence 999999999998754 33444444332222367899999999999754322 222222322 33 5899999999999
Q ss_pred HHHHHHHHHhhC
Q 017937 271 VEDIRDWILTKL 282 (363)
Q Consensus 271 i~eL~~~i~~~l 282 (363)
++++++++.+.+
T Consensus 150 i~~~~~~~~~~~ 161 (161)
T cd04113 150 VEEAFLKCARSI 161 (161)
T ss_pred HHHHHHHHHHhC
Confidence 999999998753
No 74
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.88 E-value=1.5e-21 Score=164.06 Aligned_cols=151 Identities=19% Similarity=0.227 Sum_probs=100.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccccc--eecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|||||||+++|.+..+. ...++.+.+. ..+...+..+.+|||||. ..+.. .+..++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~----~~~~~~~~~~~l~Dt~G~--~~~~~-------~~~~~~~ 67 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV----ESFEKGNLSFTAFDMSGQ--GKYRG-------LWEHYYK 67 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce----EEEEECCEEEEEEECCCC--HhhHH-------HHHHHHc
Confidence 4899999999999999999986532 1223333222 223456788999999994 33332 2344578
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhcccc---CCCCCEEEEEcCCCCCChhHHHHHHHHHH--h-cCCCCcEEEcccC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAKKLEWYE--K-FTDVDEVIPVSAK 266 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~---~~~~piilV~NK~Dl~~~~~~~~~~~~~~--~-~~~~~~i~~vSAk 266 (363)
.+|++++|+|++++. .....++....+.. ..+.|+++|+||+|+.......+....+. . .....+++++||+
T Consensus 68 ~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~ 147 (162)
T cd04157 68 NIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNAL 147 (162)
T ss_pred cCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCC
Confidence 999999999998754 22233444333321 24799999999999975432222222221 1 1112358999999
Q ss_pred CCCCHHHHHHHHHh
Q 017937 267 YGHGVEDIRDWILT 280 (363)
Q Consensus 267 ~g~gi~eL~~~i~~ 280 (363)
+|.|+++++++|.+
T Consensus 148 ~g~gv~~~~~~l~~ 161 (162)
T cd04157 148 TGEGLDEGVQWLQA 161 (162)
T ss_pred CCCchHHHHHHHhc
Confidence 99999999999865
No 75
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=3.6e-21 Score=187.56 Aligned_cols=168 Identities=25% Similarity=0.319 Sum_probs=130.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~--~~~~~~~~~~~~~ 191 (363)
...+|+++|.+|+|||||+|+|++.....++..+++|++.....+...+..+.+|||||+..... ..+..........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 45699999999999999999999988777899999999988777777788999999999743221 1122223334456
Q ss_pred hccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcccCCC
Q 017937 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSAk~g 268 (363)
++..+|++|+|+|++.+....+..+...+.. .++|+++|+||+|+.+.....+....+.. .....+++++||++|
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~ 329 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLRIAGLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTG 329 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCC
Confidence 6889999999999998887776666666555 57999999999999865444443333332 234568999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 017937 269 HGVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (363)
.|++++++.+.+...
T Consensus 330 ~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 330 QGVDKLLEAIDEAYE 344 (435)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999887654
No 76
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.88 E-value=1.8e-21 Score=172.41 Aligned_cols=158 Identities=15% Similarity=0.072 Sum_probs=106.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEE--EEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
...+|+++|.+|||||||++++.+..|.. .+..|...... ..+......+.+|||+| ++.+..+. ..
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~--~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG--~e~~~~~~-------~~ 80 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPE--TYVPTVFENYTAGLETEEQRVELSLWDTSG--SPYYDNVR-------PL 80 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCC--CcCCceeeeeEEEEEECCEEEEEEEEeCCC--chhhHHHH-------HH
Confidence 44589999999999999999999887642 22222222221 22334457899999999 44444332 34
Q ss_pred hccccceEEEEeeCCCCCc--hH-HHHHHHhccccCCCCCEEEEEcCCCCCCh------------hHH-HHHHHHHHhcC
Q 017937 192 AGINADCIVVLVDACKAPE--RI-DEILEEGVGDHKDKLPILLVLNKKDLIKP------------GEI-AKKLEWYEKFT 255 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~--~~-~~~~~~~~~~~~~~~piilV~NK~Dl~~~------------~~~-~~~~~~~~~~~ 255 (363)
++++||++|+|+|+++... .. ..|+.... ....+.|++||+||+|+... ..+ .+....+.+..
T Consensus 81 ~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~-~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~ 159 (232)
T cd04174 81 CYSDSDAVLLCFDISRPETVDSALKKWKAEIM-DYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQL 159 (232)
T ss_pred HcCCCcEEEEEEECCChHHHHHHHHHHHHHHH-HhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHc
Confidence 5899999999999987652 22 33444333 22257899999999998531 111 12233444444
Q ss_pred CCCcEEEcccCCCC-CHHHHHHHHHhhCC
Q 017937 256 DVDEVIPVSAKYGH-GVEDIRDWILTKLP 283 (363)
Q Consensus 256 ~~~~i~~vSAk~g~-gi~eL~~~i~~~l~ 283 (363)
+...+++|||++|. ||+++|..++..+.
T Consensus 160 ~~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 160 GAEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred CCCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 54468999999998 89999999987654
No 77
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.88 E-value=2.6e-21 Score=166.04 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=106.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|||||||++++....+.. ..|..... ...+...+..+.+|||||. ..+. ..+..++
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~--~~pt~g~~--~~~~~~~~~~~~i~D~~Gq--~~~~-------~~~~~~~ 82 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFN--VETVEYKNISFTVWDVGGQ--DKIR-------PLWRHYF 82 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc--ccCCccee--EEEEEECCEEEEEEECCCC--HHHH-------HHHHHHh
Confidence 44689999999999999999998766542 22222221 2234556789999999994 3332 2345568
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHhc---CCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSAk~ 267 (363)
+++|++|||+|+++.. .....++...+... ..+.|++||+||+|+.......+....+... .....++++||++
T Consensus 83 ~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~ 162 (181)
T PLN00223 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
T ss_pred ccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCC
Confidence 9999999999998753 23333444443321 1468999999999997654433333332211 1112467899999
Q ss_pred CCCHHHHHHHHHhhCC
Q 017937 268 GHGVEDIRDWILTKLP 283 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (363)
|+|++++++||.+.+.
T Consensus 163 g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 163 GEGLYEGLDWLSNNIA 178 (181)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988764
No 78
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=1.5e-21 Score=167.08 Aligned_cols=154 Identities=16% Similarity=0.116 Sum_probs=104.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEE--EEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.+|+++|.+|||||||++++.+..+. .....|...... ..+......+.+|||+| ++.+..+. ..++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G--~~~~~~~~-------~~~~ 70 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP--ETYVPTVFENYTASFEIDEQRIELSLWDTSG--SPYYDNVR-------PLCY 70 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC--CCcCCceEEEEEEEEEECCEEEEEEEEECCC--chhhhhcc-------hhhc
Confidence 38999999999999999999988774 222223222222 12334457789999999 44444332 2347
Q ss_pred cccceEEEEeeCCCCC--chH-HHHHHHhccccCCCCCEEEEEcCCCCCCh------------hHH-HHHHHHHHhcCCC
Q 017937 194 INADCIVVLVDACKAP--ERI-DEILEEGVGDHKDKLPILLVLNKKDLIKP------------GEI-AKKLEWYEKFTDV 257 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~-~~~~~~~~~~~~~~~piilV~NK~Dl~~~------------~~~-~~~~~~~~~~~~~ 257 (363)
+.+|++|+|+|.+++. ... ..|+... +....+.|+++|+||+|+... ..+ .+....+.+..+.
T Consensus 71 ~~a~~~ilvfdit~~~Sf~~~~~~w~~~i-~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~ 149 (178)
T cd04131 71 PDSDAVLICFDISRPETLDSVLKKWRGEI-QEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGA 149 (178)
T ss_pred CCCCEEEEEEECCChhhHHHHHHHHHHHH-HHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCC
Confidence 8999999999998764 332 3343333 333357899999999998531 011 1223344444454
Q ss_pred CcEEEcccCCCCC-HHHHHHHHHhh
Q 017937 258 DEVIPVSAKYGHG-VEDIRDWILTK 281 (363)
Q Consensus 258 ~~i~~vSAk~g~g-i~eL~~~i~~~ 281 (363)
.++++|||++|+| |+++|..+.+.
T Consensus 150 ~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 150 EIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred CEEEECccCcCCcCHHHHHHHHHHH
Confidence 5799999999995 99999998874
No 79
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.87 E-value=1.3e-21 Score=164.78 Aligned_cols=155 Identities=21% Similarity=0.187 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.+|+++|.+|||||||++++.+..+.. ....+........ +......+.+|||||. ..+..+. ..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~ 70 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGT--EQFASMR-------DLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCc--ccccchH-------HHHH
Confidence 379999999999999999999887642 2222322222222 2333456889999994 4444332 3347
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
.++|++++|+|+++.. .....|+....+.. ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|.
T Consensus 71 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (163)
T cd04176 71 KNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWG-CPFMETSAKSKT 149 (163)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhC-CEEEEecCCCCC
Confidence 8999999999998754 34444444333221 1579999999999986433221 11222222223 478999999999
Q ss_pred CHHHHHHHHHhhC
Q 017937 270 GVEDIRDWILTKL 282 (363)
Q Consensus 270 gi~eL~~~i~~~l 282 (363)
|+++++.++.+.+
T Consensus 150 ~v~~l~~~l~~~l 162 (163)
T cd04176 150 MVNELFAEIVRQM 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998765
No 80
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.87 E-value=2.1e-21 Score=167.12 Aligned_cols=157 Identities=20% Similarity=0.164 Sum_probs=106.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
.+..+|+++|.+|||||||++++.+..+..+.+ |.......+..++.++.+|||||. ..+. ..+..+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~--~~~~-------~~~~~~ 81 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQP----TQHPTSEELAIGNIKFTTFDLGGH--QQAR-------RLWKDY 81 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccccceEEEEECCEEEEEEECCCC--HHHH-------HHHHHH
Confidence 356799999999999999999999877643222 222223334446789999999995 2222 224456
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHh----------cCCCCc
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK----------FTDVDE 259 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~----------~~~~~~ 259 (363)
+..+|++++|+|++++. .....++.+.+... ..+.|+++|+||+|+.......+....+.. ..+...
T Consensus 82 ~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~ 161 (184)
T smart00178 82 FPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLE 161 (184)
T ss_pred hCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeE
Confidence 88999999999998753 23333444444321 157899999999998643222333333211 013446
Q ss_pred EEEcccCCCCCHHHHHHHHHhhC
Q 017937 260 VIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 260 i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
+++|||++|.|++++++||.+.+
T Consensus 162 i~~~Sa~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 162 VFMCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred EEEeecccCCChHHHHHHHHhhC
Confidence 99999999999999999998653
No 81
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.87 E-value=4e-21 Score=168.17 Aligned_cols=161 Identities=28% Similarity=0.350 Sum_probs=109.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC-eeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.++|+++|++|||||||+|++++..+. +...+.+|.......+...+ ..+.+|||||+.......+...+.. ....+
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~-~~~~~ 118 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRS-TLEEV 118 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHH-HHHHH
Confidence 358999999999999999999998753 34455556555444444433 4899999999744322222222222 23446
Q ss_pred cccceEEEEeeCCCCCchH-HHHHHHhccccC-CCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 194 INADCIVVLVDACKAPERI-DEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~-~~~~~~~~~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
..+|++++|+|++++.... ...+.+.+.... .+.|+++|+||+|+....... .... ....+++++||++|.|+
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~--~~~~~~~~~Sa~~~~gi 193 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLE--AGRPDAVFISAKTGEGL 193 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhh--cCCCceEEEEcCCCCCH
Confidence 7899999999998765322 122223332221 468999999999998755433 2222 23457999999999999
Q ss_pred HHHHHHHHhhC
Q 017937 272 EDIRDWILTKL 282 (363)
Q Consensus 272 ~eL~~~i~~~l 282 (363)
++++++|.+.+
T Consensus 194 ~~l~~~L~~~~ 204 (204)
T cd01878 194 DELLEAIEELL 204 (204)
T ss_pred HHHHHHHHhhC
Confidence 99999998754
No 82
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.87 E-value=2.1e-21 Score=164.97 Aligned_cols=157 Identities=21% Similarity=0.251 Sum_probs=105.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|||||||++++++..+.. ...+.......... +......+.+||||| +..+..+ ...+++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~~~ 71 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDK-NYKATIGVDFEMERFEILGVPFSLQLWDTAG--QERFKCI-------ASTYYR 71 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEeCCC--hHHHHhh-------HHHHhc
Confidence 79999999999999999999987742 22222222222222 233346799999999 4444333 344588
Q ss_pred ccceEEEEeeCCCC--CchHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHH---HHHHHHHHhcCCCCcEEEcccCCC
Q 017937 195 NADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI---AKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 195 ~ad~ii~VvD~~~~--~~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
.+|++++|+|+++. ......|+....+.. ....|+++|+||+|+.+.... ......+....+ .+++++||++|
T Consensus 72 ~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~g 150 (170)
T cd04108 72 GAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ-AEYWSVSALSG 150 (170)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcC-CeEEEEECCCC
Confidence 99999999999874 344555555543332 235789999999999654331 222222333233 37899999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 017937 269 HGVEDIRDWILTKLPL 284 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (363)
.|++++|+.|.+.+.+
T Consensus 151 ~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 151 ENVREFFFRVAALTFE 166 (170)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999887753
No 83
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=1.8e-21 Score=168.23 Aligned_cols=158 Identities=16% Similarity=0.154 Sum_probs=104.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccccce-ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
+|+++|.+|||||||+++|.+..+.. ..+..+.+.......+......+.+|||||. ..+.. .+..+++.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~--~~~~~-------~~~~~~~~ 72 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQ--ERFRS-------LNNSYYRG 72 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc--HHHHh-------hHHHHccC
Confidence 79999999999999999999888753 1112222222222223334567899999994 33332 23445889
Q ss_pred cceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCCCCHH
Q 017937 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (363)
Q Consensus 196 ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g~gi~ 272 (363)
+|++++|+|++++. .....|+...........|+++|+||+|+.....+. .....+....+. +++++||++|.|++
T Consensus 73 ~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~~~i~ 151 (188)
T cd04125 73 AHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI-PFFETSAKQSINVE 151 (188)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCC-eEEEEeCCCCCCHH
Confidence 99999999998754 333444443333222468999999999997443221 111222232333 79999999999999
Q ss_pred HHHHHHHhhCCC
Q 017937 273 DIRDWILTKLPL 284 (363)
Q Consensus 273 eL~~~i~~~l~~ 284 (363)
++|++|.+.+..
T Consensus 152 ~~f~~l~~~~~~ 163 (188)
T cd04125 152 EAFILLVKLIIK 163 (188)
T ss_pred HHHHHHHHHHHH
Confidence 999999987753
No 84
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.87 E-value=3.2e-21 Score=162.37 Aligned_cols=154 Identities=19% Similarity=0.198 Sum_probs=103.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecC-CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
+|+++|.+|||||||++++++..+..... ..+.+.......+......+.+|||||. ..+.. .+..+++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~-------~~~~~~~~ 72 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQ--ERFQT-------MHASYYHK 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc--hhhhh-------hhHHHhCC
Confidence 79999999999999999999887642111 1111222222233445578899999994 44333 23455889
Q ss_pred cceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHH
Q 017937 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (363)
Q Consensus 196 ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~e 273 (363)
+|++++|+|++++. .....|+... +....+.|+++|+||+|+.... ..+... +....+ .+++++||++|.|+++
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~-~~~~~~-~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 73 AHACILVFDVTRKITYKNLSKWYEEL-REYRPEIPCIVVANKIDLDPSV-TQKKFN-FAEKHN-LPLYYVSAADGTNVVK 148 (161)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH-HHhCCCCcEEEEEECccCchhH-HHHHHH-HHHHcC-CeEEEEeCCCCCCHHH
Confidence 99999999998754 2233344333 3222578999999999985322 122222 222222 4799999999999999
Q ss_pred HHHHHHhhCC
Q 017937 274 IRDWILTKLP 283 (363)
Q Consensus 274 L~~~i~~~l~ 283 (363)
+++.+.+.+.
T Consensus 149 l~~~l~~~~~ 158 (161)
T cd04124 149 LFQDAIKLAV 158 (161)
T ss_pred HHHHHHHHHH
Confidence 9999987664
No 85
>PRK04213 GTP-binding protein; Provisional
Probab=99.87 E-value=6.4e-21 Score=166.46 Aligned_cols=163 Identities=26% Similarity=0.346 Sum_probs=105.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh------hhhHHHHHHH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK------IHMLDSMMMK 187 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~------~~~~~~~~~~ 187 (363)
+.++|+++|.+|||||||+|+|.+..+. ++..+++|.......+ . .+.+|||||+.... ...+...+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDW--G--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEee--c--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 4569999999999999999999998754 5677788776543322 2 68999999952110 1112221212
Q ss_pred HHHhhccccceEEEEeeCCCCCc-----------hHHHHHHHhccccCCCCCEEEEEcCCCCCChh--HHHHHHHHHHhc
Q 017937 188 NVRSAGINADCIVVLVDACKAPE-----------RIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKF 254 (363)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~-----------~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~ 254 (363)
.+...+..++++++|+|++.... .....+...+.. .++|+++|+||+|+.... ...+....+...
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 160 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLY 160 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcHHHHHHHHHHHhcCC
Confidence 22223456789999999865321 112233344433 579999999999997543 122222222110
Q ss_pred CC----CCcEEEcccCCCCCHHHHHHHHHhhCCC
Q 017937 255 TD----VDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 255 ~~----~~~i~~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
.. ..+++++||++| |+++++++|.+.+..
T Consensus 161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred ccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 00 125899999999 999999999998765
No 86
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.87 E-value=2e-21 Score=171.20 Aligned_cols=154 Identities=18% Similarity=0.285 Sum_probs=105.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
+|+++|.+|||||||+++|++..+.. ..+...... .......+.+.+|||||. ..+..+. ..+++.+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~--~~~Tig~~~--~~~~~~~~~l~iwDt~G~--e~~~~l~-------~~~~~~a 68 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD--TVSTVGGAF--YLKQWGPYNISIWDTAGR--EQFHGLG-------SMYCRGA 68 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CCCccceEE--EEEEeeEEEEEEEeCCCc--ccchhhH-------HHHhccC
Confidence 79999999999999999999988752 222111121 122234578999999994 4444432 3347899
Q ss_pred ceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCC-------------------hhH--HHHHHHHHHh
Q 017937 197 DCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIK-------------------PGE--IAKKLEWYEK 253 (363)
Q Consensus 197 d~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~-------------------~~~--~~~~~~~~~~ 253 (363)
|++|+|+|+++.. .....++..+.+....+.|+|||+||+|+.. .+. .++...+...
T Consensus 69 d~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~ 148 (220)
T cd04126 69 AAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKR 148 (220)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHH
Confidence 9999999998753 4455566555443335689999999999965 111 1222222222
Q ss_pred cCC------------CCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 254 FTD------------VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 254 ~~~------------~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
... ..++++|||++|.||+++|..+.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 149 INKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred hCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 211 147999999999999999999998764
No 87
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.87 E-value=1.6e-21 Score=181.66 Aligned_cols=159 Identities=27% Similarity=0.359 Sum_probs=117.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC-eeEEEEeCCCCchhhhh--hHHHHHHHHHHhhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIH--MLDSMMMKNVRSAG 193 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~l~DtpG~~~~~~~--~~~~~~~~~~~~~~ 193 (363)
.|+++|.||||||||+|+|.+.+.. ++.++.||..+..+.+...+ .++.+|||||+...... .+. ..+.+.+
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~-va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg----~~flrhi 233 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLG----HRFLKHI 233 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHH----HHHHHHH
Confidence 7999999999999999999987654 68888999988888877665 89999999998543221 232 2334446
Q ss_pred cccceEEEEeeCCCCC-----chHHHHHHHhcccc---CCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEccc
Q 017937 194 INADCIVVLVDACKAP-----ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~-----~~~~~~~~~~~~~~---~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (363)
..|+++++|+|+++.. +....+ .+.+..+ ..++|+++|+||+|+.......+..+.+....+ .+++++||
T Consensus 234 erad~ll~VvD~s~~~~~~~~e~l~~l-~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~-~~vi~iSA 311 (329)
T TIGR02729 234 ERTRVLLHLIDISPLDGRDPIEDYEII-RNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALG-KPVFPISA 311 (329)
T ss_pred HhhCEEEEEEcCccccccCHHHHHHHH-HHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcC-CcEEEEEc
Confidence 7899999999998641 222222 2222221 146899999999999876555555555544333 47999999
Q ss_pred CCCCCHHHHHHHHHhhC
Q 017937 266 KYGHGVEDIRDWILTKL 282 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l 282 (363)
++++|+++|+++|.+.+
T Consensus 312 ktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 312 LTGEGLDELLYALAELL 328 (329)
T ss_pred cCCcCHHHHHHHHHHHh
Confidence 99999999999998765
No 88
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.87 E-value=2.7e-21 Score=166.77 Aligned_cols=157 Identities=20% Similarity=0.183 Sum_probs=104.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe---CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+|+++|.+|||||||+++|.+..+. .....+........+. .....+.+|||||. ..+..+ ...++
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQ--EEYDRL-------RPLSY 70 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCc--hhHHHH-------HHHhC
Confidence 7999999999999999999988764 2333333222222222 33467899999994 433333 23347
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH----H-HHHHHHHHhcCCCCcEEEcccC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE----I-AKKLEWYEKFTDVDEVIPVSAK 266 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~----~-~~~~~~~~~~~~~~~i~~vSAk 266 (363)
..+|++++|+|+++.. +.....+.........+.|+++|+||+|+..... + ......+....+..+++++||+
T Consensus 71 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 150 (187)
T cd04132 71 PDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAK 150 (187)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCC
Confidence 8999999999998754 2222222222222235789999999999965321 1 1122233333344479999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 017937 267 YGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (363)
+|.|++++|..+.+.+..
T Consensus 151 ~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 151 TMENVEEVFDTAIEEALK 168 (187)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 89
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.87 E-value=3.5e-21 Score=161.64 Aligned_cols=152 Identities=20% Similarity=0.229 Sum_probs=101.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
+|+++|.+|||||||+++|.+..+....+..+.+. ..........+.+|||||. ..+. ..+..++..+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~l~i~D~~G~--~~~~-------~~~~~~~~~~ 68 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV---EMLQLEKHLSLTVWDVGGQ--EKMR-------TVWKCYLENT 68 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce---EEEEeCCceEEEEEECCCC--HhHH-------HHHHHHhccC
Confidence 58999999999999999999987653222222221 1112234578999999995 2222 2234457899
Q ss_pred ceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHH--hcC--CCCcEEEcccCCCC
Q 017937 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--KFT--DVDEVIPVSAKYGH 269 (363)
Q Consensus 197 d~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~--~~~--~~~~i~~vSAk~g~ 269 (363)
|++++|+|++++. .....++...++.. ..+.|+++|+||+|+.......+....+. ... ...++++|||++|+
T Consensus 69 ~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (160)
T cd04156 69 DGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGE 148 (160)
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCC
Confidence 9999999998764 33444555544331 15799999999999964322222222221 111 12368999999999
Q ss_pred CHHHHHHHHHh
Q 017937 270 GVEDIRDWILT 280 (363)
Q Consensus 270 gi~eL~~~i~~ 280 (363)
|+++++++|.+
T Consensus 149 gv~~~~~~i~~ 159 (160)
T cd04156 149 GLAEAFRKLAS 159 (160)
T ss_pred ChHHHHHHHhc
Confidence 99999999865
No 90
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.87 E-value=2.9e-21 Score=170.45 Aligned_cols=157 Identities=18% Similarity=0.158 Sum_probs=105.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeC---CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+|+++|.+|||||||+++|.+..+.. ...+..+.+.....+.. ....+.+|||||. ..+..+ +..++
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~-~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~--~~~~~l-------~~~~~ 71 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGK-SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ--SIGGKM-------LDKYI 71 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc--HHHHHH-------HHHHh
Confidence 79999999999999999999887642 22333333433333322 3578999999994 433333 33447
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc---CCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~---~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
+.+|++|+|+|++++. .....|+..+.+.. ..+.|+++|+||+|+...+.+ .+....+....+ .+++++||++
T Consensus 72 ~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~-~~~~~iSAkt 150 (215)
T cd04109 72 YGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANG-MESCLVSAKT 150 (215)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEECCC
Confidence 8999999999998753 33333333332221 135689999999999743322 112223333333 4789999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 017937 268 GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (363)
|.|++++|++|.+.+..
T Consensus 151 g~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 151 GDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988764
No 91
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.87 E-value=1e-21 Score=160.63 Aligned_cols=161 Identities=20% Similarity=0.254 Sum_probs=117.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccccee-cCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
.+|.++|++|||||||+|++...+|... ..+.+.........++..-+.+.+|||+| +++|..+...+ ++
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAG--QERFqsLg~aF-------YR 80 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAG--QERFQSLGVAF-------YR 80 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEeccc--HHHhhhcccce-------ec
Confidence 4899999999999999999999887531 11222222222223444557889999999 78887775433 89
Q ss_pred ccceEEEEeeCCCC--CchHHHHHHHhccccC----CCCCEEEEEcCCCCCCh--hHH--HHHHHHHHhcCCCCcEEEcc
Q 017937 195 NADCIVVLVDACKA--PERIDEILEEGVGDHK----DKLPILLVLNKKDLIKP--GEI--AKKLEWYEKFTDVDEVIPVS 264 (363)
Q Consensus 195 ~ad~ii~VvD~~~~--~~~~~~~~~~~~~~~~----~~~piilV~NK~Dl~~~--~~~--~~~~~~~~~~~~~~~i~~vS 264 (363)
.+|++++|+|..++ ++.+..|-.+++.... ...|+||++||+|+... +.+ .....|... .+.+|+|++|
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s-~gnipyfEtS 159 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKS-KGNIPYFETS 159 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHh-cCCceeEEec
Confidence 99999999998764 4667777666665532 56799999999999652 222 233344444 4567999999
Q ss_pred cCCCCCHHHHHHHHHhhCCCCC
Q 017937 265 AKYGHGVEDIRDWILTKLPLGP 286 (363)
Q Consensus 265 Ak~g~gi~eL~~~i~~~l~~~~ 286 (363)
||.+.||++.|+.+...+...+
T Consensus 160 AK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 160 AKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred ccccccHHHHHHHHHHHHHhcc
Confidence 9999999999999998876543
No 92
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2.9e-22 Score=186.94 Aligned_cols=218 Identities=25% Similarity=0.246 Sum_probs=147.8
Q ss_pred hccccccccccCcCCCcCCccccccccCCcCcCCCCCCchhhh-hcccCCCCCCCCcEEEEEcCCCCChHHHHHHHhccc
Q 017937 61 WSNQREMDLDDGDEMEFDDASSFLSLSEKPDRNMASPDDYEIE-EFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 61 ~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
..+.+++.+||.++.+.++.+...-..+... ++++.... ............+.|+|+|.||||||||+|+|...+
T Consensus 217 ~~a~l~a~idf~e~~~l~~~~t~~~~~~~~~----l~d~v~s~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~d 292 (531)
T KOG1191|consen 217 ALAGLEARIDFEEERPLEEIETVEIFIESLS----LLDDVLSHLNKADEIERLQSGLQIAIVGRPNVGKSSLLNALSRED 292 (531)
T ss_pred HHhccceeechhhcCchhhccchhhhhHHHH----HHHHHHHHHHhhhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCC
Confidence 4556778889987766554443332111111 01111000 000001111245699999999999999999999999
Q ss_pred cceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHh
Q 017937 140 LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEG 219 (363)
Q Consensus 140 ~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~ 219 (363)
..+|++.+|||++.+...++..|+++.++||+|+.+...+......+++.+..+..||++++|+|+.......+..+.+.
T Consensus 293 rsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~ 372 (531)
T KOG1191|consen 293 RSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARI 372 (531)
T ss_pred ceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHH
Confidence 99999999999999999999999999999999997767777888889999999999999999999954432222222222
Q ss_pred ccc----c------CCCCCEEEEEcCCCCCChh-HHHH----HHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 220 VGD----H------KDKLPILLVLNKKDLIKPG-EIAK----KLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 220 ~~~----~------~~~~piilV~NK~Dl~~~~-~~~~----~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
+.. . ..+.|++++.||+|+..+- +... .... .-...+..+.++|+++++|++.|.+.|.+.+.
T Consensus 373 l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 373 LETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred HHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 111 0 1458999999999998651 1111 0111 11112323455999999999999999887653
No 93
>PTZ00369 Ras-like protein; Provisional
Probab=99.87 E-value=2e-21 Score=168.02 Aligned_cols=158 Identities=19% Similarity=0.168 Sum_probs=105.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
..+|+++|.+|||||||++++.+..+.. ....+....... .++.....+.+|||||. ..+..+ +..+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~l-------~~~~ 73 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFID--EYDPTIEDSYRKQCVIDEETCLLDILDTAGQ--EEYSAM-------RDQY 73 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCc--CcCCchhhEEEEEEEECCEEEEEEEEeCCCC--ccchhh-------HHHH
Confidence 4589999999999999999999877642 222222222222 23344567889999995 344333 3335
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHH-HHHHHHhcCCCCcEEEcccCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSAk~g 268 (363)
++.+|++++|+|+++.. +....|+....+.. ..+.|+++|+||+|+.....+.. ....+....+ .+++++||++|
T Consensus 74 ~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~-~~~~e~Sak~~ 152 (189)
T PTZ00369 74 MRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFG-IPFLETSAKQR 152 (189)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhC-CEEEEeeCCCC
Confidence 78999999999998754 33444444333221 24789999999999864332211 1112222223 47999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 017937 269 HGVEDIRDWILTKLPL 284 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (363)
.|++++|++|.+.+..
T Consensus 153 ~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 153 VNVDEAFYELVREIRK 168 (189)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987753
No 94
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.87 E-value=4.5e-21 Score=166.25 Aligned_cols=157 Identities=24% Similarity=0.222 Sum_probs=105.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccc------cceecCCCCceEEEEEEEEe--------------CCCeeEEEEeCCCCchh
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK------LSIVTNKPQTTRHRILGICS--------------GPEYQMILYDTPGIIEK 176 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~------~~~~~~~~~~t~~~~~~~~~--------------~~~~~i~l~DtpG~~~~ 176 (363)
+|+++|++|+|||||+++|++.. .......+++|.......+. ..+..+.+|||||+.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-- 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-- 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH--
Confidence 69999999999999999998731 11123344566554333222 226789999999962
Q ss_pred hhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHH----HHHHHH
Q 017937 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK----KLEWYE 252 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~----~~~~~~ 252 (363)
. +...+......+|++++|+|++++.............. .+.|+++|+||+|+........ ..+.+.
T Consensus 80 ~-------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~ 150 (192)
T cd01889 80 S-------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQ 150 (192)
T ss_pred H-------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence 1 22334444678999999999988664443322222222 3679999999999985443322 222211
Q ss_pred hc-----CCCCcEEEcccCCCCCHHHHHHHHHhhCCC
Q 017937 253 KF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 253 ~~-----~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
.. ....+++++||++|.|+++|+++|.++++.
T Consensus 151 ~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 151 KTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 11 234589999999999999999999999874
No 95
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.87 E-value=4.9e-21 Score=163.88 Aligned_cols=156 Identities=28% Similarity=0.310 Sum_probs=101.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccccce--------ec------CCCCceEEEEEEEE-----eCCCeeEEEEeCCCCchhh
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSI--------VT------NKPQTTRHRILGIC-----SGPEYQMILYDTPGIIEKK 177 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~--------~~------~~~~~t~~~~~~~~-----~~~~~~i~l~DtpG~~~~~ 177 (363)
+|+++|++|||||||+++|++..... .. ...+.|........ ...+..+.+|||||+. .
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~ 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHV--D 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCCh--h
Confidence 69999999999999999998753211 00 11233333222111 3456789999999963 2
Q ss_pred hhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCC-
Q 017937 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD- 256 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~- 256 (363)
+ ...+..++..+|++|+|+|++++...........+.. .++|+++|+||+|+..... ......+....+
T Consensus 80 ~-------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~ 149 (179)
T cd01890 80 F-------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--NNLEIIPVINKIDLPSADP-ERVKQQIEDVLGL 149 (179)
T ss_pred h-------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--cCCCEEEEEECCCCCcCCH-HHHHHHHHHHhCC
Confidence 2 2234456789999999999987653322221122222 5689999999999864321 111122222222
Q ss_pred -CCcEEEcccCCCCCHHHHHHHHHhhCCC
Q 017937 257 -VDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 257 -~~~i~~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
...++++||++|.|+++|+++|.+.++.
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 150 DPSEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred CcccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 2358999999999999999999988753
No 96
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.87 E-value=8.3e-21 Score=160.51 Aligned_cols=156 Identities=20% Similarity=0.229 Sum_probs=107.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeC---CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
|.|+++|.+|+|||||+|+|.+..+.. ...+++|.......... .+..+.+|||||+ ..+..+ +...
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~--~~~~~~-------~~~~ 70 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGH--EAFTNM-------RARG 70 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCc--HHHHHH-------HHHH
Confidence 469999999999999999999887653 34445565544334443 3678999999995 333222 2334
Q ss_pred ccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh--HHHHHHHHHH-----hcCCCCcEEEccc
Q 017937 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYE-----KFTDVDEVIPVSA 265 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~~-----~~~~~~~i~~vSA 265 (363)
+..+|++++|+|++++...........++. .++|+++|+||+|+.... ........+. ......+++++||
T Consensus 71 ~~~~d~il~v~d~~~~~~~~~~~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T cd01887 71 ASLTDIAILVVAADDGVMPQTIEAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSA 148 (168)
T ss_pred HhhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeec
Confidence 678999999999987654433333344444 578999999999997432 2222222111 1122357999999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 017937 266 KYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l~ 283 (363)
++|.|+++++++|.+...
T Consensus 149 ~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 149 KTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ccCCCHHHHHHHHHHhhh
Confidence 999999999999987653
No 97
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.87 E-value=6.5e-21 Score=160.16 Aligned_cols=155 Identities=19% Similarity=0.224 Sum_probs=102.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccccce-ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
+|+++|.+|||||||+++|.+..+.. .....+.+.......+......+.+|||||. ..+..+ ....++.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~~~ 72 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQ--ERFRTL-------TSSYYRG 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCc--hhhhhh-------hHHHhCC
Confidence 79999999999999999999887643 2233333333222233444578999999994 333222 3344789
Q ss_pred cceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChh-HHHHHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 196 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG-EIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 196 ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
+|++++|+|++++. .....|+....+.. ..+.|+++|+||+|+.... ...+...... ..+ .+++++||++|.|+
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-~~~-~~~~~~Sa~~~~gi 150 (161)
T cd01863 73 AQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-KHN-MLFIETSAKTRDGV 150 (161)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-HcC-CEEEEEecCCCCCH
Confidence 99999999998654 23333332222211 2578999999999997332 2222222222 233 47999999999999
Q ss_pred HHHHHHHHhhC
Q 017937 272 EDIRDWILTKL 282 (363)
Q Consensus 272 ~eL~~~i~~~l 282 (363)
+++++.+.+.+
T Consensus 151 ~~~~~~~~~~~ 161 (161)
T cd01863 151 QQAFEELVEKI 161 (161)
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 98
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.87 E-value=5.6e-21 Score=164.38 Aligned_cols=161 Identities=18% Similarity=0.200 Sum_probs=103.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE-EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI-CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
+..+|+++|.+|||||||++++.+..+....++.+.+....... ....+..+.+|||||. ..+.. .+..+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~-------~~~~~ 72 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ--EKLRP-------LWKSY 72 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCc--HhHHH-------HHHHH
Confidence 34589999999999999999999877642211112222221111 1335678999999994 33322 24445
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHH--hcC--CCCcEEEccc
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--KFT--DVDEVIPVSA 265 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~--~~~--~~~~i~~vSA 265 (363)
++.+|++++|+|++++. .....++.+..... ..+.|+++|+||+|+.......+...... ... ...+++++||
T Consensus 73 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 152 (183)
T cd04152 73 TRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACA 152 (183)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeec
Confidence 78999999999998753 22333333333221 15789999999999864322222222211 111 1236899999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 017937 266 KYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l~ 283 (363)
++|.|+++++++|.+.+.
T Consensus 153 ~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 153 IIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 999999999999998774
No 99
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.87 E-value=4.1e-21 Score=161.67 Aligned_cols=155 Identities=20% Similarity=0.194 Sum_probs=104.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|||||||++++.+..+.. ...+..+....... .......+.+||+||. ..+.. ....+++
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~-------~~~~~~~ 71 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSE-QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ--ERFRS-------ITSSYYR 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCh--HHHHH-------HHHHHhC
Confidence 79999999999999999999887642 22222222222222 2223367899999993 33332 2344578
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCcEEEcccCCCCC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSAk~g~g 270 (363)
.+|++++|+|++++. +....|+.........+.|+++|+||+|+..... ........ ...+ .+++++||++|.|
T Consensus 72 ~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~-~~~~-~~~~e~Sa~~~~~ 149 (164)
T smart00175 72 GAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFA-EEHG-LPFFETSAKTNTN 149 (164)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHH-HHcC-CeEEEEeCCCCCC
Confidence 999999999998754 2233344443333225799999999999875332 22222332 3333 4799999999999
Q ss_pred HHHHHHHHHhhCC
Q 017937 271 VEDIRDWILTKLP 283 (363)
Q Consensus 271 i~eL~~~i~~~l~ 283 (363)
+++++++|.+.+.
T Consensus 150 i~~l~~~i~~~~~ 162 (164)
T smart00175 150 VEEAFEELAREIL 162 (164)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 100
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.87 E-value=3.9e-21 Score=164.72 Aligned_cols=157 Identities=17% Similarity=0.162 Sum_probs=103.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEE--e----------CCCeeEEEEeCCCCchhhhhhHH
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--S----------GPEYQMILYDTPGIIEKKIHMLD 182 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~----------~~~~~i~l~DtpG~~~~~~~~~~ 182 (363)
..+|+++|.+|||||||++++.+..+.. ...+....+.....+ . .....+.+||||| +..+..+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~- 79 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNP-KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAG--QERFRSL- 79 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCC--hHHHHHH-
Confidence 3589999999999999999999877642 112211111111111 1 2347789999999 4443332
Q ss_pred HHHHHHHHhhccccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCC
Q 017937 183 SMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVD 258 (363)
Q Consensus 183 ~~~~~~~~~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~ 258 (363)
...+++++|++++|+|++++. .....|+....... ..+.|+++|+||+|+.....+. +....+....+ .
T Consensus 80 ------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~-~ 152 (180)
T cd04127 80 ------TTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYG-I 152 (180)
T ss_pred ------HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcC-C
Confidence 344578999999999998654 33344444332221 2468999999999997533221 11222333333 4
Q ss_pred cEEEcccCCCCCHHHHHHHHHhhC
Q 017937 259 EVIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 259 ~i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
+++++||++|.|+++++++|.+.+
T Consensus 153 ~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 153 PYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999998765
No 101
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=7.7e-21 Score=162.92 Aligned_cols=158 Identities=26% Similarity=0.301 Sum_probs=106.5
Q ss_pred CCCCCCcEEEEEcCCCCChHHHHHHHhccc-cceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh-hHHHHHHH
Q 017937 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSMMMK 187 (363)
Q Consensus 110 ~~~~~~~~i~i~G~~~~GKSSLln~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~-~~~~~~~~ 187 (363)
.|..+.++|+++|.+|+|||||+|+|++.. ...++..+++|.+....... ..+.+|||||+...... .....+..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN---DGFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC---CcEEEEeCCCCccccCChhHHHHHHH
Confidence 344577799999999999999999999976 44456777888765443332 37999999997422110 11111222
Q ss_pred HHHhh---ccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHH----HHHHhcCCCCcE
Q 017937 188 NVRSA---GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL----EWYEKFTDVDEV 260 (363)
Q Consensus 188 ~~~~~---~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~----~~~~~~~~~~~i 260 (363)
....+ ...+|++++|+|++++.......+...+.. .++|+++|+||+|+....+..... ..+.......++
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence 22222 335689999999988776666555555554 578999999999998654433222 333332223479
Q ss_pred EEcccCCCCCHH
Q 017937 261 IPVSAKYGHGVE 272 (363)
Q Consensus 261 ~~vSAk~g~gi~ 272 (363)
|++||++|+|++
T Consensus 168 ~~~Sa~~g~gi~ 179 (179)
T TIGR03598 168 QLFSSLKKTGID 179 (179)
T ss_pred EEEECCCCCCCC
Confidence 999999999974
No 102
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.87 E-value=5.7e-21 Score=161.63 Aligned_cols=156 Identities=18% Similarity=0.202 Sum_probs=104.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEE-EEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH-RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
+|+++|.+|||||||+++|.+..+.. ..+.+... .....+......+.+|||||... +. ..+..++..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~-------~~~~~~~~~ 70 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPE--NVPRVLPEITIPADVTPERVPTTIVDTSSRPQ--DR-------ANLAAEIRK 70 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc--cCCCcccceEeeeeecCCeEEEEEEeCCCchh--hh-------HHHhhhccc
Confidence 79999999999999999999887742 22322211 12223344567899999999532 11 123344689
Q ss_pred cceEEEEeeCCCCCchH--HHHHHHhccccCCCCCEEEEEcCCCCCChhHH---HHHHHHH-HhcCCCCcEEEcccCCCC
Q 017937 196 ADCIVVLVDACKAPERI--DEILEEGVGDHKDKLPILLVLNKKDLIKPGEI---AKKLEWY-EKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 196 ad~ii~VvD~~~~~~~~--~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~---~~~~~~~-~~~~~~~~i~~vSAk~g~ 269 (363)
+|++++|+|++++.... ...|...++....+.|+++|+||+|+.+.... .+....+ .......+++++||++|.
T Consensus 71 ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd01893 71 ANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLI 150 (166)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecccccc
Confidence 99999999998754222 23344434333357999999999999764432 2222222 222222479999999999
Q ss_pred CHHHHHHHHHhhCC
Q 017937 270 GVEDIRDWILTKLP 283 (363)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (363)
|++++|+.+.+.+.
T Consensus 151 ~v~~lf~~~~~~~~ 164 (166)
T cd01893 151 NVSEVFYYAQKAVL 164 (166)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999987653
No 103
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.87 E-value=6.6e-21 Score=164.11 Aligned_cols=157 Identities=23% Similarity=0.283 Sum_probs=111.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceec---------------CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhH
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT---------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~ 181 (363)
+|+++|.+|+|||||+|+|++....... ...+.|.......+...+..+.+|||||+.. +
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~--~--- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED--F--- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH--H---
Confidence 4899999999999999999987654211 1233444444444555678999999999632 1
Q ss_pred HHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHH----HHHHhc---
Q 017937 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL----EWYEKF--- 254 (363)
Q Consensus 182 ~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~----~~~~~~--- 254 (363)
...+..++..+|++++|+|+.++.......+...+.. .+.|+++|+||+|+..+....... ..+...
T Consensus 76 ----~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (189)
T cd00881 76 ----SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFI 149 (189)
T ss_pred ----HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccccc
Confidence 2234455779999999999988765554455555444 679999999999998643332222 222221
Q ss_pred ---------CCCCcEEEcccCCCCCHHHHHHHHHhhCCC
Q 017937 255 ---------TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 255 ---------~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
....+++++||++|.|+++++++|.+.+++
T Consensus 150 ~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 150 STKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred chhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 134689999999999999999999999863
No 104
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.87 E-value=5.8e-21 Score=160.56 Aligned_cols=153 Identities=20% Similarity=0.294 Sum_probs=102.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
+|+++|.+|+|||||++++.+..+.. ...+....+.... .+. .....+.+||||| +..+..+ ...+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G--~~~~~~~-------~~~~ 71 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK-DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG--QEEFDAI-------TKAY 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCc--hHHHHHh-------HHHH
Confidence 79999999999999999999877642 1122222222222 222 3457899999999 4443333 3445
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
++.+|++++|+|++++. .....|+... .....+.|+++|+||+|+.....+. +....+....+ .+++++||++|.
T Consensus 72 ~~~~~~~v~v~d~~~~~s~~~l~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (162)
T cd04106 72 YRGAQACILVFSTTDRESFEAIESWKEKV-EAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQ-LPLFRTSVKDDF 149 (162)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHH-HHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcC-CeEEEEECCCCC
Confidence 78999999999998754 3333343333 2222579999999999997543321 11222233333 389999999999
Q ss_pred CHHHHHHHHHhh
Q 017937 270 GVEDIRDWILTK 281 (363)
Q Consensus 270 gi~eL~~~i~~~ 281 (363)
|+++++++|...
T Consensus 150 ~v~~l~~~l~~~ 161 (162)
T cd04106 150 NVTELFEYLAEK 161 (162)
T ss_pred CHHHHHHHHHHh
Confidence 999999999764
No 105
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=4.5e-21 Score=185.22 Aligned_cols=164 Identities=23% Similarity=0.243 Sum_probs=118.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
..|+|+|.||||||||+|+|++.+.. ++++|+||..+..+.+...+.++.+|||||+...... ...+...+...+..
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk-IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~--g~gLg~~fLrhier 236 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK-IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASE--GKGLGLDFLRHIER 236 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCcccccceEEEEEECCeEEEEEECCCCccccch--hhHHHHHHHHHHHh
Confidence 37999999999999999999998764 5889999999999988888899999999998642211 11111233445788
Q ss_pred cceEEEEeeCCCC------CchHHH---HHHHhccc--------cCCCCCEEEEEcCCCCCChhHHHHHHH-HHHhcCCC
Q 017937 196 ADCIVVLVDACKA------PERIDE---ILEEGVGD--------HKDKLPILLVLNKKDLIKPGEIAKKLE-WYEKFTDV 257 (363)
Q Consensus 196 ad~ii~VvD~~~~------~~~~~~---~~~~~~~~--------~~~~~piilV~NK~Dl~~~~~~~~~~~-~~~~~~~~ 257 (363)
||++|+|+|+++. ...... .+..+... ...++|+|||+||+|+.....+.+... .+... +
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~-g- 314 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEAR-G- 314 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHc-C-
Confidence 9999999999742 122222 22222210 014689999999999976554433322 33322 2
Q ss_pred CcEEEcccCCCCCHHHHHHHHHhhCCC
Q 017937 258 DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 258 ~~i~~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
.++|++||+++.|+++|+.+|.+.+..
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 479999999999999999999988754
No 106
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.86 E-value=3.1e-21 Score=161.39 Aligned_cols=156 Identities=26% Similarity=0.317 Sum_probs=107.7
Q ss_pred EEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceE
Q 017937 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 199 (363)
Q Consensus 120 i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~i 199 (363)
++|.+|||||||+|++.+... .+...+++|.......+...+..+.+|||||+...........+....... ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ-KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc-cccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEE
Confidence 589999999999999999763 356778888877666666677899999999964322111111121222111 589999
Q ss_pred EEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHH
Q 017937 200 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 279 (363)
Q Consensus 200 i~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~ 279 (363)
++|+|+.+.... ..++. .+.. .++|+++|+||+|+.....+......+....+ .+++++||++|.|+++++++|.
T Consensus 79 i~v~d~~~~~~~-~~~~~-~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 79 VNVVDATNLERN-LYLTL-QLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLG-VPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred EEEeeCCcchhH-HHHHH-HHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhC-CCeEEEEccCCCCHHHHHHHHH
Confidence 999999875332 22222 2223 47899999999999765433322333333333 4799999999999999999998
Q ss_pred hhC
Q 017937 280 TKL 282 (363)
Q Consensus 280 ~~l 282 (363)
..+
T Consensus 154 ~~~ 156 (158)
T cd01879 154 ELA 156 (158)
T ss_pred HHh
Confidence 764
No 107
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.86 E-value=8e-21 Score=162.05 Aligned_cols=153 Identities=18% Similarity=0.215 Sum_probs=103.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
..+|+++|.+|+|||||+++|.+..+....++.+.+ .......+..+.+|||||. ..+. ..+..++.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~l~D~~G~--~~~~-------~~~~~~~~ 81 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN----VEEIVYKNIRFLMWDIGGQ--ESLR-------SSWNTYYT 81 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc----eEEEEECCeEEEEEECCCC--HHHH-------HHHHHHhh
Confidence 358999999999999999999887765332222222 2234445789999999995 3222 23445578
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcccCCC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSAk~g 268 (363)
.+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....+.. .....+++++||++|
T Consensus 82 ~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g 161 (174)
T cd04153 82 NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTG 161 (174)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCC
Confidence 999999999998753 23334455444331 146899999999999753222222222211 112246899999999
Q ss_pred CCHHHHHHHHHh
Q 017937 269 HGVEDIRDWILT 280 (363)
Q Consensus 269 ~gi~eL~~~i~~ 280 (363)
.|+++++++|.+
T Consensus 162 ~gi~e~~~~l~~ 173 (174)
T cd04153 162 EGLPEGLDWIAS 173 (174)
T ss_pred CCHHHHHHHHhc
Confidence 999999999975
No 108
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.86 E-value=4.6e-21 Score=163.27 Aligned_cols=155 Identities=18% Similarity=0.186 Sum_probs=102.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|+|||||++++.+..+. ....++........ +....+.+.+|||||. ..+..+ ...++.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~ 70 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ--EDYDRL-------RPLSYP 70 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCc--cccccc-------ccccCC
Confidence 7999999999999999999988764 22333333322222 2333456789999994 333332 223478
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-------------HHHHHHHhcCCCCc
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDVDE 259 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-------------~~~~~~~~~~~~~~ 259 (363)
.+|++++|+|.+++. ......+...++....+.|+++|+||+|+.+..... +....+.+..+..+
T Consensus 71 ~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 150 (174)
T cd04135 71 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHC 150 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCE
Confidence 999999999998754 223223333333324679999999999986432111 11122233344457
Q ss_pred EEEcccCCCCCHHHHHHHHHhhC
Q 017937 260 VIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 260 i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
+++|||++|.|++++|+.+.+.+
T Consensus 151 ~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 151 YVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEEecCCcCCCHHHHHHHHHHHh
Confidence 99999999999999999998754
No 109
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=3.7e-20 Score=155.86 Aligned_cols=169 Identities=27% Similarity=0.310 Sum_probs=126.9
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHhccc-cceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh-hhhHHHHHHHH
Q 017937 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK-IHMLDSMMMKN 188 (363)
Q Consensus 111 ~~~~~~~i~i~G~~~~GKSSLln~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~-~~~~~~~~~~~ 188 (363)
|....+-|+++|.+|||||||+|+|++.+ .+.++.+||.|+......+.. .+.++|.||+.-.. .....+.+.+.
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHHH
Confidence 34456689999999999999999999965 577899999999877666543 38999999984321 12233333333
Q ss_pred HHhhc---cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHh----cCCCC-cE
Q 017937 189 VRSAG---INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK----FTDVD-EV 260 (363)
Q Consensus 189 ~~~~~---~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~----~~~~~-~i 260 (363)
+..|+ .+-.++++++|+.++....+..+.+++.. .+.|+++|+||+|..+..+.......... ..... .+
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~ 174 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE--LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWV 174 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceE
Confidence 33443 34678999999999999888888888888 89999999999999987666544443332 22221 17
Q ss_pred EEcccCCCCCHHHHHHHHHhhCCC
Q 017937 261 IPVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 261 ~~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
+.+|+.++.|+++|...|.+.+..
T Consensus 175 ~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 175 VLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred EEEecccccCHHHHHHHHHHHhhc
Confidence 889999999999999999887643
No 110
>PRK11058 GTPase HflX; Provisional
Probab=99.86 E-value=7.5e-21 Score=182.62 Aligned_cols=163 Identities=23% Similarity=0.251 Sum_probs=114.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC-eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
++|+++|.+|||||||+|+|++.++. +.+.+++|.+.....+...+ ..+.+|||||+.......+...+. .+...+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~-~tl~~~~ 275 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFK-ATLQETR 275 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHH-HHHHHhh
Confidence 58999999999999999999998876 67888888887766665544 388999999974432233333333 3456678
Q ss_pred ccceEEEEeeCCCCCchHH-HHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHH
Q 017937 195 NADCIVVLVDACKAPERID-EILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~-~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~ 272 (363)
.||++++|+|++++..... ..+..++... ..+.|+++|+||+|+....... ..... .+...++.+||++|.|++
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~--~~~~~--~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR--IDRDE--ENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH--HHHHh--cCCCceEEEeCCCCCCHH
Confidence 9999999999998652221 1122222222 1468999999999997532211 11111 122235889999999999
Q ss_pred HHHHHHHhhCCC
Q 017937 273 DIRDWILTKLPL 284 (363)
Q Consensus 273 eL~~~i~~~l~~ 284 (363)
+|+++|.+.+..
T Consensus 352 eL~e~I~~~l~~ 363 (426)
T PRK11058 352 LLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHhhh
Confidence 999999998853
No 111
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.86 E-value=9.4e-21 Score=159.70 Aligned_cols=155 Identities=18% Similarity=0.255 Sum_probs=101.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceE-EEEEE--EE-eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILG--IC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~-~~~~~--~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
+|+++|.+|||||||+++|.+...........++. +.... .+ ......+.+||||| ...+..+ +..+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~ 72 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAG--QELYSDM-------VSNY 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCC--HHHHHHH-------HHHH
Confidence 79999999999999999998652211223333332 22111 12 23457899999999 3333322 3445
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHH-HHHHHHhcCCCCcEEEcccCCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
+..+|++++|+|.++.. .....|+...... ..+.|+++|+||+|+.+...+.. ....+....+ .+++++||++|.
T Consensus 73 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 150 (164)
T cd04101 73 WESPSVFILVYDVSNKASFENCSRWVNKVRTA-SKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQ-LKFFKTSALRGV 150 (164)
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECcccccccCCCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 78999999999998753 3333444333222 24689999999999975433221 1122222223 479999999999
Q ss_pred CHHHHHHHHHhhC
Q 017937 270 GVEDIRDWILTKL 282 (363)
Q Consensus 270 gi~eL~~~i~~~l 282 (363)
|+++++++|.+.+
T Consensus 151 gi~~l~~~l~~~~ 163 (164)
T cd04101 151 GYEEPFESLARAF 163 (164)
T ss_pred ChHHHHHHHHHHh
Confidence 9999999998764
No 112
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.86 E-value=2.3e-21 Score=165.19 Aligned_cols=159 Identities=30% Similarity=0.362 Sum_probs=109.7
Q ss_pred EEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccce
Q 017937 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (363)
Q Consensus 120 i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ 198 (363)
++|.+|||||||+|+|.+.+. .+...+++|........... +..+.+|||||+...... .+.+...+...+..+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASE--GRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhc--CCCccHHHHHHHhccCE
Confidence 589999999999999999876 45677888887776666666 889999999997432110 01111233445678999
Q ss_pred EEEEeeCCCCC-----c---hHHHHHHHhcccc-------CCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEc
Q 017937 199 IVVLVDACKAP-----E---RIDEILEEGVGDH-------KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPV 263 (363)
Q Consensus 199 ii~VvD~~~~~-----~---~~~~~~~~~~~~~-------~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~v 263 (363)
+++|+|+++.. . ....+........ ..+.|+++|+||+|+....................+++++
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEE
Confidence 99999998762 2 1222222222111 1368999999999998765544432112222334579999
Q ss_pred ccCCCCCHHHHHHHHHhh
Q 017937 264 SAKYGHGVEDIRDWILTK 281 (363)
Q Consensus 264 SAk~g~gi~eL~~~i~~~ 281 (363)
||++|.|++++++++...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998765
No 113
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.86 E-value=1e-20 Score=162.61 Aligned_cols=157 Identities=17% Similarity=0.185 Sum_probs=104.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|++|||||||++++....+.. ..| |+. .....+...+..+.+|||||. ..+. ..+..++
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~--~~~-T~~-~~~~~~~~~~~~~~l~D~~G~--~~~~-------~~~~~~~ 82 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT--TIP-TIG-FNVETVEYKNLKFTMWDVGGQ--DKLR-------PLWRHYY 82 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--cCC-ccc-cceEEEEECCEEEEEEECCCC--HhHH-------HHHHHHh
Confidence 34689999999999999999997666542 222 221 112234456789999999994 3332 2345568
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHhc---CCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSAk~ 267 (363)
+.+|++|+|+|+++.. .....++.+.+... ..+.|++||+||+|+.......+....+... .....++++||++
T Consensus 83 ~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~t 162 (182)
T PTZ00133 83 QNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATT 162 (182)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCC
Confidence 9999999999998643 33334444443321 1468999999999986532222222222110 1113567899999
Q ss_pred CCCHHHHHHHHHhhCC
Q 017937 268 GHGVEDIRDWILTKLP 283 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (363)
|.|+++++++|.+.+.
T Consensus 163 g~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 163 AQGLYEGLDWLSANIK 178 (182)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987664
No 114
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.86 E-value=5.4e-21 Score=162.12 Aligned_cols=153 Identities=20% Similarity=0.185 Sum_probs=101.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEE--EEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|||||||+++|++..+. .....+..+.. ..........+.+|||||+. .+..+. ...++
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~--~~~~~~-------~~~~~ 70 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQE--EYDRLR-------PLSYP 70 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcc--cccccc-------hhhcC
Confidence 7999999999999999999998763 12222222222 22233445679999999953 222221 12367
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH------------HHHHHHHHhcCCCCcE
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI------------AKKLEWYEKFTDVDEV 260 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~------------~~~~~~~~~~~~~~~i 260 (363)
.+|++++|+|++++. ......+...+.....+.|+++|+||+|+...... ......+....+..++
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 150 (171)
T cd00157 71 NTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGY 150 (171)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEE
Confidence 899999999998743 22222233333332257999999999999765432 1112223333344489
Q ss_pred EEcccCCCCCHHHHHHHHHh
Q 017937 261 IPVSAKYGHGVEDIRDWILT 280 (363)
Q Consensus 261 ~~vSAk~g~gi~eL~~~i~~ 280 (363)
+++||++|.|+++++++|.+
T Consensus 151 ~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 151 MECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEeecCCCCCHHHHHHHHhh
Confidence 99999999999999999875
No 115
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.86 E-value=4.8e-21 Score=165.52 Aligned_cols=157 Identities=26% Similarity=0.392 Sum_probs=113.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccce-----------------ecCCCCceEEEEEEEEe--CCCeeEEEEeCCCCch
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-----------------VTNKPQTTRHRILGICS--GPEYQMILYDTPGIIE 175 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~-----------------~~~~~~~t~~~~~~~~~--~~~~~i~l~DtpG~~~ 175 (363)
..+|+++|+.++|||||+++|++..... .....+.|.......+. ..+..++++||||+..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 4589999999999999999998644211 01122344444444444 6778999999999632
Q ss_pred hhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHH---
Q 017937 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE--- 252 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~--- 252 (363)
+...+...+..+|++|+|+|+.++...........+.. .+.|+++|+||+|+.. ....+....+.
T Consensus 83 ---------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~--~~~p~ivvlNK~D~~~-~~~~~~~~~~~~~l 150 (188)
T PF00009_consen 83 ---------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE--LGIPIIVVLNKMDLIE-KELEEIIEEIKEKL 150 (188)
T ss_dssp ---------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH--TT-SEEEEEETCTSSH-HHHHHHHHHHHHHH
T ss_pred ---------eeecccceecccccceeeeecccccccccccccccccc--cccceEEeeeeccchh-hhHHHHHHHHHHHh
Confidence 23445556889999999999999888877777777766 7899999999999983 33333222222
Q ss_pred --hc--C--CCCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 253 --KF--T--DVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 253 --~~--~--~~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
.. . ...+++++||++|.|+++|++.|.+.+|
T Consensus 151 ~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 151 LKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 11 1 2468999999999999999999999886
No 116
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.86 E-value=6.5e-21 Score=166.21 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=104.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
..+|+++|++|||||||+++|.+..+.. ...+....+.....+ ......+.+|||||. ..+..+ ...+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~--~~~~~~-------~~~~ 75 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGERVKLQIWDTAGQ--ERFRTI-------TSTY 75 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCccccceeEEEEEEECCEEEEEEEEeCCCc--hhHHHH-------HHHH
Confidence 3589999999999999999999887642 112222212222222 233467899999994 333322 3445
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
+..+|++++|+|++++. .....|+... .......|+++|+||+|+.....+. .....+....+ .+++++||++|.
T Consensus 76 ~~~a~~iilv~D~~~~~s~~~~~~~~~~i-~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~ 153 (199)
T cd04110 76 YRGTHGVIVVYDVTNGESFVNVKRWLQEI-EQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMG-ISLFETSAKENI 153 (199)
T ss_pred hCCCcEEEEEEECCCHHHHHHHHHHHHHH-HHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEECCCCc
Confidence 78999999999998754 3333444433 2223578999999999997543221 11222222233 579999999999
Q ss_pred CHHHHHHHHHhhCC
Q 017937 270 GVEDIRDWILTKLP 283 (363)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (363)
||+++|++|.+.+.
T Consensus 154 gi~~lf~~l~~~~~ 167 (199)
T cd04110 154 NVEEMFNCITELVL 167 (199)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988774
No 117
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=7.2e-21 Score=194.95 Aligned_cols=169 Identities=22% Similarity=0.243 Sum_probs=126.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHH--HHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK--NVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~--~~~~ 191 (363)
..++|+++|.+|||||||+|+|++.+...++..+++|++.....+..++..+.+|||||+...........+.. ....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 34699999999999999999999998777789999999988777777788899999999743211111111111 2345
Q ss_pred hccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcccCCC
Q 017937 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSAk~g 268 (363)
++..+|++++|+|++++.......+...+.. .++|+++|+||+|+.+..........+.. .....+++++||++|
T Consensus 529 ~i~~advvilViDat~~~s~~~~~i~~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg 606 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLKVMSMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTG 606 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCC
Confidence 5789999999999998876665555544443 57999999999999865433322222222 234567899999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 017937 269 HGVEDIRDWILTKLPL 284 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (363)
.|+++|++.+.+.++.
T Consensus 607 ~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 607 WHTNRLAPAMQEALES 622 (712)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998764
No 118
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.86 E-value=9.1e-21 Score=158.99 Aligned_cols=151 Identities=21% Similarity=0.247 Sum_probs=100.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
+|+++|++|||||||+++|....+.. ..+ +.... ...+...+..+.+|||||. ..+. ..+..++..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~~-t~~~~-~~~~~~~~~~~~i~Dt~G~--~~~~-------~~~~~~~~~~ 67 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--TIP-TIGFN-VETVTYKNLKFQVWDLGGQ--TSIR-------PYWRCYYSNT 67 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--cCC-ccCcC-eEEEEECCEEEEEEECCCC--HHHH-------HHHHHHhcCC
Confidence 58999999999999999998766542 122 11111 1233446688999999995 3322 2345568899
Q ss_pred ceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcccCCCCC
Q 017937 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 197 d~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSAk~g~g 270 (363)
|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+.......+....+.. .....+++++||++|.|
T Consensus 68 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd04151 68 DAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCC
Confidence 9999999998753 22234444443321 146899999999999754322222222211 01123699999999999
Q ss_pred HHHHHHHHHh
Q 017937 271 VEDIRDWILT 280 (363)
Q Consensus 271 i~eL~~~i~~ 280 (363)
+++++++|.+
T Consensus 148 i~~l~~~l~~ 157 (158)
T cd04151 148 LDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 119
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.86 E-value=3.3e-20 Score=161.16 Aligned_cols=166 Identities=28% Similarity=0.331 Sum_probs=113.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccc-cceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh-hhHHHHHHHHHH-
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSMMMKNVR- 190 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~-~~~~~~~~~~~~- 190 (363)
..++|+++|.+|||||||+|+|++.. ...++..+++|+....... +.++.+|||||+..... ......+.....
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 45689999999999999999999975 4456677777776443322 37899999999632110 111112222222
Q ss_pred --hhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCC--CCcEEEcccC
Q 017937 191 --SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD--VDEVIPVSAK 266 (363)
Q Consensus 191 --~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~--~~~i~~vSAk 266 (363)
.....++++++|+|++.+......++..++.. .+.|+++++||+|+.+..+.......+..... ..+++++||+
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~ 177 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSL 177 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcC
Confidence 22345578999999887765555555555544 57899999999999876554433322222111 3578999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 017937 267 YGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (363)
+|.|+++++++|.+.+.+
T Consensus 178 ~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 178 KKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CCCCHHHHHHHHHHHhcC
Confidence 999999999999988764
No 120
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.86 E-value=8.5e-21 Score=161.78 Aligned_cols=156 Identities=20% Similarity=0.193 Sum_probs=101.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.+|+++|++|||||||++++.+..+.. ....+....... .+......+.+|||||. ..+..+ ...++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQ--EDYDRL-------RPLSY 70 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccccceEEEEEECCEEEEEEEEeCCCc--hhhhhc-------ccccc
Confidence 389999999999999999999887642 222222222222 23334467899999994 333222 12346
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHH-------------HHHHHHhcCCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTDVD 258 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-------------~~~~~~~~~~~~ 258 (363)
.++|++++|+|+++.. ......+...++....+.|+++|+||+|+........ ....+....+..
T Consensus 71 ~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~ 150 (175)
T cd01870 71 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAF 150 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCc
Confidence 8999999999998653 2332223333333235789999999999865322111 112222223445
Q ss_pred cEEEcccCCCCCHHHHHHHHHhhC
Q 017937 259 EVIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 259 ~i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
++++|||++|.|++++|++|.+.+
T Consensus 151 ~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 151 GYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEEEeccccCcCHHHHHHHHHHHh
Confidence 799999999999999999998654
No 121
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.86 E-value=1.5e-20 Score=162.49 Aligned_cols=156 Identities=21% Similarity=0.187 Sum_probs=106.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|++|||||||++++.+..+....+..+ .....+...+..+.+|||||. ..+. ..+..++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~----~~~~~i~~~~~~~~l~D~~G~--~~~~-------~~~~~~~ 84 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLH----PTSEELTIGNIKFKTFDLGGH--EQAR-------RLWKDYF 84 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccC----cceEEEEECCEEEEEEECCCC--HHHH-------HHHHHHh
Confidence 56799999999999999999999877542222222 222334445688999999994 2222 2344567
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHh--------------cCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK--------------FTD 256 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~--------------~~~ 256 (363)
..+|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+.......+....+.. ...
T Consensus 85 ~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T cd00879 85 PEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIR 164 (190)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCce
Confidence 8999999999998642 22334555544322 156999999999999743233333333321 012
Q ss_pred CCcEEEcccCCCCCHHHHHHHHHhhC
Q 017937 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 257 ~~~i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
..++++|||++|+|++++|+||.+.+
T Consensus 165 ~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 165 PIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred eEEEEEeEecCCCChHHHHHHHHhhC
Confidence 24689999999999999999998753
No 122
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.86 E-value=1e-20 Score=166.70 Aligned_cols=157 Identities=13% Similarity=0.099 Sum_probs=106.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEE--EEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.+|+++|.+|||||||++++.+..+.. .+..|..... ...++...+.+.+|||+| +..+..+. ..++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~--~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G--~e~~~~l~-------~~~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPG--SYVPTVFENYTASFEIDKRRIELNMWDTSG--SSYYDNVR-------PLAY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCccccceEEEEEECCEEEEEEEEeCCC--cHHHHHHh-------HHhc
Confidence 389999999999999999999887642 2222222222 223344457889999999 44444433 2348
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH------------H-HHHHHHHHhcCCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTDVD 258 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~------------~-~~~~~~~~~~~~~~ 258 (363)
..+|++|+|+|++++. ......|...++....+.|++||+||+|+..... + .+....+.+..+..
T Consensus 71 ~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~ 150 (222)
T cd04173 71 PDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAV 150 (222)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCC
Confidence 9999999999998764 3333334333333336799999999999964211 1 11233344445556
Q ss_pred cEEEcccCCCCC-HHHHHHHHHhhCC
Q 017937 259 EVIPVSAKYGHG-VEDIRDWILTKLP 283 (363)
Q Consensus 259 ~i~~vSAk~g~g-i~eL~~~i~~~l~ 283 (363)
+|++|||+++.| |+++|........
T Consensus 151 ~y~E~SAk~~~~~V~~~F~~~~~~~~ 176 (222)
T cd04173 151 SYVECSSRSSERSVRDVFHVATVASL 176 (222)
T ss_pred EEEEcCCCcCCcCHHHHHHHHHHHHH
Confidence 899999999985 9999999887543
No 123
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.86 E-value=1.8e-20 Score=162.91 Aligned_cols=165 Identities=20% Similarity=0.265 Sum_probs=107.6
Q ss_pred EcCCCCChHHHHHHHhccccce-ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceE
Q 017937 121 LGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 199 (363)
Q Consensus 121 ~G~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~i 199 (363)
+|.+|||||||++++++..+.. ...+.+.+.......+......+.+||||| +..+..+ +..+++.+|++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G--~e~~~~l-------~~~~~~~ad~~ 71 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAG--QEKFGGL-------RDGYYIQGQCA 71 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCC--chhhhhh-------hHHHhcCCCEE
Confidence 6999999999999999776642 111222222222223344567899999999 4444433 33458899999
Q ss_pred EEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHH
Q 017937 200 VVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 277 (363)
Q Consensus 200 i~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~ 277 (363)
|+|+|+++.. .....|+.++.+ ...+.|+++|+||+|+.......+... +.... ..++++|||++|.||+++|++
T Consensus 72 ilV~D~t~~~S~~~i~~w~~~i~~-~~~~~piilvgNK~Dl~~~~v~~~~~~-~~~~~-~~~~~e~SAk~~~~v~~~F~~ 148 (200)
T smart00176 72 IIMFDVTARVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKDRKVKAKSIT-FHRKK-NLQYYDISAKSNYNFEKPFLW 148 (200)
T ss_pred EEEEECCChHHHHHHHHHHHHHHH-hCCCCCEEEEEECcccccccCCHHHHH-HHHHc-CCEEEEEeCCCCCCHHHHHHH
Confidence 9999999764 334444444433 235799999999999854221112222 22222 347999999999999999999
Q ss_pred HHhhCCC--------CCCCCCCCCCCCc
Q 017937 278 ILTKLPL--------GPAYYPKDIVSEH 297 (363)
Q Consensus 278 i~~~l~~--------~~~~~~~~~~~~~ 297 (363)
|.+.+.. .++.++.+..++.
T Consensus 149 l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 176 (200)
T smart00176 149 LARKLIGDPNLEFVAMPALAPPEVVMDP 176 (200)
T ss_pred HHHHHHhcccceeccCcccCCcccccCh
Confidence 9986633 3455555544443
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.86 E-value=1.3e-20 Score=157.99 Aligned_cols=151 Identities=21% Similarity=0.275 Sum_probs=104.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
+|+++|.+|||||||++++++..........+.+.. .+...+..+.+|||||. ..+.. .+..++..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~--~~~~~-------~~~~~~~~~ 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVE----TVEYKNVSFTVWDVGGQ--DKIRP-------LWKHYYENT 67 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceE----EEEECCEEEEEEECCCC--hhhHH-------HHHHHhccC
Confidence 589999999999999999999874332333333222 23345688999999995 33322 234457899
Q ss_pred ceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcccCCCCC
Q 017937 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 197 d~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSAk~g~g 270 (363)
|++++|+|++++. .....++....... ..+.|+++|+||+|+.......+....+.. .....+++++||++|.|
T Consensus 68 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd00878 68 NGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCC
Confidence 9999999998763 33334444443321 257899999999999865433333333322 22345899999999999
Q ss_pred HHHHHHHHHh
Q 017937 271 VEDIRDWILT 280 (363)
Q Consensus 271 i~eL~~~i~~ 280 (363)
+++++++|..
T Consensus 148 v~~~~~~l~~ 157 (158)
T cd00878 148 LDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 125
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.86 E-value=9.7e-21 Score=164.97 Aligned_cols=162 Identities=18% Similarity=0.190 Sum_probs=106.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|||||||++++++..+. .....++.......+...+ ..+.+|||||. ..+..+ ...++.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~~~-------~~~~~~ 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGS--YSFPAM-------RKLSIQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCc--hhhhHH-------HHHHhh
Confidence 5899999999999999999988764 2233333222222333333 67899999995 333322 223578
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccC-CCCCEEEEEcCCCCCCh-hHHH--HHHHHHHhcCCCCcEEEcccCCC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKP-GEIA--KKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~-~~~piilV~NK~Dl~~~-~~~~--~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
.+|++++|+|++++. +....++..+..... .+.|+++|+||+|+... ..+. ........ ....+++++||++|
T Consensus 70 ~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~-~~~~~~~~~Sa~~g 148 (198)
T cd04147 70 NSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVEL-DWNCGFVETSAKDN 148 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHh-hcCCcEEEecCCCC
Confidence 999999999998753 223333333322211 57999999999999652 2221 11111111 12247899999999
Q ss_pred CCHHHHHHHHHhhCCCCCCCCC
Q 017937 269 HGVEDIRDWILTKLPLGPAYYP 290 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~~~~ 290 (363)
.|+++++++|.+.+...++.+|
T Consensus 149 ~gv~~l~~~l~~~~~~~~~~~~ 170 (198)
T cd04147 149 ENVLEVFKELLRQANLPYNLSP 170 (198)
T ss_pred CCHHHHHHHHHHHhhcccccch
Confidence 9999999999999887666555
No 126
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.86 E-value=1.4e-20 Score=159.75 Aligned_cols=157 Identities=23% Similarity=0.241 Sum_probs=103.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|++|||||||++++.+..+.. ...+....+.... ........+.+|||||. ..+.. .+..+++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~--~~~~~-------~~~~~~~ 71 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQ--ERFQS-------LGVAFYR 71 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-CcCCccceEEEEEEEEECCEEEEEEEEeCCCh--HHHHh-------HHHHHhc
Confidence 79999999999999999999887642 2222222222222 22333467889999994 33322 2345588
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhcccc----CCCCCEEEEEcCCCCCChh--HHHHHHHHHHhcCCCCcEEEcccC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAK 266 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~----~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~i~~vSAk 266 (363)
.+|++|+|+|+.++. .....|....+... ..+.|+++|+||+|+..+. ..... ..+....+..+++++||+
T Consensus 72 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~ 150 (172)
T cd01862 72 GADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKA-QQWCQSNGNIPYFETSAK 150 (172)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHH-HHHHHHcCCceEEEEECC
Confidence 999999999998754 22223333222221 1378999999999997422 12222 223333444689999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 017937 267 YGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (363)
+|.|+++++++|.+.+.+
T Consensus 151 ~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 151 EAINVEQAFETIARKALE 168 (172)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987653
No 127
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=9.4e-21 Score=180.86 Aligned_cols=164 Identities=26% Similarity=0.299 Sum_probs=116.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
.|+++|.||||||||+|+|++.+.. ++++|+||..+..+.+... +..+.+|||||+...... ...+...+...+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~--~~gLg~~fLrhier 236 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE--GVGLGHQFLRHIER 236 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc--cchHHHHHHHHHhh
Confidence 7999999999999999999998754 5788999999888877665 688999999998542211 11122234445678
Q ss_pred cceEEEEeeCCCCC--ch--HHHHHHHhccccC---CCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCC
Q 017937 196 ADCIVVLVDACKAP--ER--IDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 196 ad~ii~VvD~~~~~--~~--~~~~~~~~~~~~~---~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
|+++++|+|+++.. .. ....+...+..+. .++|++||+||+|+..... ....+....+ .+++++||+++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e---~l~~l~~~l~-~~i~~iSA~tg 312 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEE---NLEEFKEKLG-PKVFPISALTG 312 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHH---HHHHHHHHhC-CcEEEEeCCCC
Confidence 99999999997531 11 1122333333221 4689999999999854322 1122222222 47999999999
Q ss_pred CCHHHHHHHHHhhCCCCCC
Q 017937 269 HGVEDIRDWILTKLPLGPA 287 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~ 287 (363)
+|+++|+++|.+.+...+.
T Consensus 313 eGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 313 QGLDELLYAVAELLEETPE 331 (424)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 9999999999998876554
No 128
>PLN03110 Rab GTPase; Provisional
Probab=99.86 E-value=8.5e-21 Score=167.51 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=107.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
..+|+++|++|||||||+++|.+..+.. ...+....+.... .+......+.+|||||. ..+..+ ...+
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~ 81 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ--ERYRAI-------TSAY 81 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCc--HHHHHH-------HHHH
Confidence 3489999999999999999999887642 2223222222222 23334468999999993 333322 3445
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
++.++++|+|+|+++.. .....|+.........+.|+++|+||+|+.....+. +....+.... ..+++++||++|.
T Consensus 82 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~-~~~~~e~SA~~g~ 160 (216)
T PLN03110 82 YRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKE-GLSFLETSALEAT 160 (216)
T ss_pred hCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHc-CCEEEEEeCCCCC
Confidence 78999999999998653 333444443333222579999999999986443221 2223333333 3589999999999
Q ss_pred CHHHHHHHHHhhCCC
Q 017937 270 GVEDIRDWILTKLPL 284 (363)
Q Consensus 270 gi~eL~~~i~~~l~~ 284 (363)
|++++|++|.+.+..
T Consensus 161 ~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 161 NVEKAFQTILLEIYH 175 (216)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887743
No 129
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.86 E-value=1.8e-20 Score=156.12 Aligned_cols=153 Identities=20% Similarity=0.240 Sum_probs=102.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcccccee-cCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
+|+++|.+|||||||++++.+..+... ....+.+..............+.+||+||. ..+. .....++++
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~-------~~~~~~~~~ 72 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQ--ERFR-------SITPSYYRG 72 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCCh--HHHH-------HHHHHHhcC
Confidence 799999999999999999999887543 122222222222233334578899999994 3222 234555789
Q ss_pred cceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCCh-h-HHHHHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP-G-EIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 196 ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~-~-~~~~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
+|++++|+|++++. .....|+...........|+++|+||+|+..+ . ...+....... . ..+++++||++|.|+
T Consensus 73 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~-~~~~~~~sa~~~~~i 150 (159)
T cd00154 73 AHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-N-GLLFFETSAKTGENV 150 (159)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHH-c-CCeEEEEecCCCCCH
Confidence 99999999998743 33334444333332246999999999999622 2 22222232222 2 358999999999999
Q ss_pred HHHHHHHHh
Q 017937 272 EDIRDWILT 280 (363)
Q Consensus 272 ~eL~~~i~~ 280 (363)
++++++|.+
T Consensus 151 ~~~~~~i~~ 159 (159)
T cd00154 151 EELFQSLAE 159 (159)
T ss_pred HHHHHHHhC
Confidence 999999863
No 130
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.86 E-value=1.7e-20 Score=157.36 Aligned_cols=155 Identities=22% Similarity=0.324 Sum_probs=102.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|+|||||+++|.+..+.. ...+.++....... .......+.+||||| +..+..+ ...++.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g--~~~~~~~-------~~~~~~ 71 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAG--QERYHAL-------GPIYYR 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCc--hHHHHHh-------hHHHhc
Confidence 79999999999999999999887642 22222222222222 223345789999999 3333332 233468
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
.+|++++|+|++++. .....++.++......+.|+++|+||+|+.....+ ......+....+ .+++++||++|.|+
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~gi 150 (162)
T cd04123 72 DADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVG-AKHFETSAKTGKGI 150 (162)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 899999999998754 23333433333322247899999999999753322 111222222223 47899999999999
Q ss_pred HHHHHHHHhhC
Q 017937 272 EDIRDWILTKL 282 (363)
Q Consensus 272 ~eL~~~i~~~l 282 (363)
++++++|.+.+
T Consensus 151 ~~~~~~l~~~~ 161 (162)
T cd04123 151 EELFLSLAKRM 161 (162)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 131
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.85 E-value=1.5e-20 Score=163.04 Aligned_cols=155 Identities=19% Similarity=0.272 Sum_probs=101.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEE-E--EEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-L--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~-~--~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
||+++|.+|||||||+++|++..+.. ..+..+..... . ..+......+.+|||||. ..+..+ ...++
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~~~-------~~~~~ 71 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV-GPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS--ERYEAM-------SRIYY 71 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC-cCcccceeeEEEEEEEEECCEEEEEEEEECCCc--hhhhhh-------hHhhc
Confidence 79999999999999999999887642 22333332211 2 223333456789999994 333333 23347
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChh----HH-HHHHHHHHhcCCCCcEEEcccC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EI-AKKLEWYEKFTDVDEVIPVSAK 266 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~----~~-~~~~~~~~~~~~~~~i~~vSAk 266 (363)
..+|++++|+|+++.. .....|+.. ++....+.|+++|+||+|+.... .+ ......+....+ .+++++||+
T Consensus 72 ~~~d~iilv~d~~~~~s~~~~~~~~~~-i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~ 149 (193)
T cd04118 72 RGAKAAIVCYDLTDSSSFERAKFWVKE-LQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-AQHFETSSK 149 (193)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHH-HHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC-CeEEEEeCC
Confidence 8999999999998753 223333333 33333578999999999986432 11 011122222222 478999999
Q ss_pred CCCCHHHHHHHHHhhCC
Q 017937 267 YGHGVEDIRDWILTKLP 283 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l~ 283 (363)
+|.|+++++++|.+.+.
T Consensus 150 ~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 150 TGQNVDELFQKVAEDFV 166 (193)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998764
No 132
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.85 E-value=1.6e-20 Score=168.62 Aligned_cols=155 Identities=19% Similarity=0.255 Sum_probs=103.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|||||||++++++..+.. ....|+.+.....+. ...+.+.+|||+|. ..+..+. ..++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~--~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~--~~~~~~~-------~~~~~ 70 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE--QYTPTIEDFHRKLYSIRGEVYQLDILDTSGN--HPFPAMR-------RLSIL 70 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC--CCCCChhHhEEEEEEECCEEEEEEEEECCCC--hhhhHHH-------HHHhc
Confidence 79999999999999999999887742 333333332222333 33478889999994 3333332 22467
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccc---------cCCCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCcEE
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGD---------HKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVI 261 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~---------~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~ 261 (363)
.+|++|+|+|+++.. +....++.++... ...+.|+++|+||+|+..... ..+..+.+... ....++
T Consensus 71 ~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~-~~~~~~ 149 (247)
T cd04143 71 TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD-ENCAYF 149 (247)
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc-CCCEEE
Confidence 899999999998753 3333333333211 124789999999999974222 22222332222 234799
Q ss_pred EcccCCCCCHHHHHHHHHhhCC
Q 017937 262 PVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 262 ~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
++||++|.|++++|++|...+.
T Consensus 150 evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 150 EVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred EEeCCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999998763
No 133
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.1e-20 Score=158.98 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=115.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCc---eEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT---TRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~---t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 190 (363)
+..+|+++|++|||||+++.++..+.|. +....| ........+......+.+|||+| ++.+..+ +.
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~--~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaG--Qerf~ti-------~~ 79 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFN--TSFISTIGIDFKIKTIELDGKKIKLQIWDTAG--QERFRTI-------TT 79 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCc--CCccceEEEEEEEEEEEeCCeEEEEEEEEccc--chhHHHH-------HH
Confidence 4559999999999999999999988875 222221 11222233445567889999999 6665444 56
Q ss_pred hhccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCC
Q 017937 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
+|++.|+++++|+|.++.. +....|+...-+.....+|++||+||+|+..++.+. +..+.+....+ .+++++|||+
T Consensus 80 sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G-~~F~EtSAk~ 158 (207)
T KOG0078|consen 80 AYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYG-IKFFETSAKT 158 (207)
T ss_pred HHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhC-CeEEEccccC
Confidence 6799999999999998643 556665554444444689999999999998755543 22344444444 4899999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 017937 268 GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (363)
|.||++.|-.|.+.+..
T Consensus 159 ~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 159 NFNIEEAFLSLARDILQ 175 (207)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999887764
No 134
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.85 E-value=1.3e-20 Score=160.06 Aligned_cols=157 Identities=18% Similarity=0.174 Sum_probs=102.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEE-EE--EEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH-RI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~-~~--~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
..+|+++|.+|||||||++++++..+. +....+|+.. .. ...+......+.+||++|. ..+..+ ...
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~--~~~~~~-------~~~ 73 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGED--EVAILL-------NDA 73 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCc--cccccc-------chh
Confidence 458999999999999999999998874 1223333221 11 1223333467889999994 333322 223
Q ss_pred hccccceEEEEeeCCCCCc--hHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCCC
Q 017937 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~--~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
++.++|++++|+|++++.. ....++.. +.. ..+.|+++|+||+|+.+.... ......+....+...++++||++|
T Consensus 74 ~~~~~d~~llv~d~~~~~s~~~~~~~~~~-~~~-~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (169)
T cd01892 74 ELAACDVACLVYDSSDPKSFSYCAEVYKK-YFM-LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLG 151 (169)
T ss_pred hhhcCCEEEEEEeCCCHHHHHHHHHHHHH-hcc-CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccC
Confidence 4689999999999987532 22233322 221 147999999999999644321 111122333334435699999999
Q ss_pred CCHHHHHHHHHhhCC
Q 017937 269 HGVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (363)
.|++++|+.|.+.+.
T Consensus 152 ~~v~~lf~~l~~~~~ 166 (169)
T cd01892 152 DSSNELFTKLATAAQ 166 (169)
T ss_pred ccHHHHHHHHHHHhh
Confidence 999999999998764
No 135
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.85 E-value=1.4e-20 Score=160.30 Aligned_cols=153 Identities=19% Similarity=0.216 Sum_probs=102.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|+|||||++++.+..+. .....+..+..... +......+.+|||||. ..+..+ ...+++
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~ 70 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYP--TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQ--DEFDKL-------RPLCYP 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEECCCC--hhhccc-------cccccC
Confidence 7999999999999999999887764 34444443333222 2333467889999994 333333 223578
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH------------H-HHHHHHHHhcCCCCc
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTDVDE 259 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~------------~-~~~~~~~~~~~~~~~ 259 (363)
.+|++|+|+|++++. ......+...+.....+.|+++|+||+|+..... + .+....+....+..+
T Consensus 71 ~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 150 (173)
T cd04130 71 DTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACE 150 (173)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCe
Confidence 999999999998764 3333223333333225689999999999864321 1 111222333344558
Q ss_pred EEEcccCCCCCHHHHHHHHHh
Q 017937 260 VIPVSAKYGHGVEDIRDWILT 280 (363)
Q Consensus 260 i~~vSAk~g~gi~eL~~~i~~ 280 (363)
++++||++|.|++++|+.+.-
T Consensus 151 ~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 151 YIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 999999999999999998763
No 136
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=1.7e-20 Score=164.91 Aligned_cols=157 Identities=22% Similarity=0.288 Sum_probs=106.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe---CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
.+|+++|.+|||||||+++|++..+.... .+..+.+.....+. .....+.+|||||. ..+.. ....+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~ 72 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ--ERFRS-------ITRSY 72 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcc--hhHHH-------HHHHH
Confidence 48999999999999999999988775322 22222232222222 23468999999994 33332 23445
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccC-CCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~-~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
++++|++++|+|++++. .....|+........ ...|++||+||+|+.....+ .+....+.+..+ .+++++||++|
T Consensus 73 ~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~g 151 (211)
T cd04111 73 YRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG-MKYIETSARTG 151 (211)
T ss_pred hcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhC-CEEEEEeCCCC
Confidence 88999999999998753 344455554433221 45788999999999754322 122233333334 58999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 017937 269 HGVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (363)
.|++++|++|.+.+.
T Consensus 152 ~~v~e~f~~l~~~~~ 166 (211)
T cd04111 152 DNVEEAFELLTQEIY 166 (211)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998664
No 137
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.85 E-value=2.9e-20 Score=157.94 Aligned_cols=158 Identities=21% Similarity=0.232 Sum_probs=104.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
..+|+++|++|||||||++++++..+.. ...+....+..... +......+.+|||||. ..+.. ..+..+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~------~~~~~~ 72 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPE-RTEATIGVDFRERTVEIDGERIKVQLWDTAGQ--ERFRK------SMVQHY 72 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-ccccceeEEEEEEEEEECCeEEEEEEEeCCCh--HHHHH------hhHHHh
Confidence 3589999999999999999999877642 12222222222222 3344478999999994 33221 123345
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCC-
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY- 267 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~- 267 (363)
++++|++++|+|++++. .....|+....... ..+.|+++|+||+|+.....+. .....+..... .+++++||++
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~ 151 (170)
T cd04115 73 YRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHS-MPLFETSAKDP 151 (170)
T ss_pred hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcC-CcEEEEeccCC
Confidence 78999999999998754 33444443332221 2569999999999997544321 22223333333 5899999999
Q ss_pred --CCCHHHHHHHHHhhC
Q 017937 268 --GHGVEDIRDWILTKL 282 (363)
Q Consensus 268 --g~gi~eL~~~i~~~l 282 (363)
+.|++++|..+.+.+
T Consensus 152 ~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 152 SENDHVEAIFMTLAHKL 168 (170)
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 899999999998765
No 138
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=2.9e-20 Score=157.48 Aligned_cols=157 Identities=19% Similarity=0.197 Sum_probs=103.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
..+|+++|.+|||||||++++.+..+.. ...+..+.+.....+... ...+.+|||||. ..+.. ....+
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~--~~~~~-------~~~~~ 76 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ--ERFRS-------ITQSY 76 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHH
Confidence 4589999999999999999998765531 222222223333333333 366889999994 33222 23345
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
+..+|++++|+|+++.. .....|+.........+.|+++|+||+|+....++. .....+..... .+++++||++|.
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~ 155 (169)
T cd04114 77 YRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQD-MYYLETSAKESD 155 (169)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEeeCCCCC
Confidence 88999999999998653 223334332222122468999999999997544322 22233333333 579999999999
Q ss_pred CHHHHHHHHHhhC
Q 017937 270 GVEDIRDWILTKL 282 (363)
Q Consensus 270 gi~eL~~~i~~~l 282 (363)
|+++++++|.+.+
T Consensus 156 gv~~l~~~i~~~~ 168 (169)
T cd04114 156 NVEKLFLDLACRL 168 (169)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998753
No 139
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.85 E-value=1.5e-20 Score=154.78 Aligned_cols=139 Identities=20% Similarity=0.326 Sum_probs=91.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
+|+++|++|||||||+|+|.+..+.. .. |.. .. +.-.+|||||.... ...+.......++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~----~~-t~~-----~~---~~~~~iDt~G~~~~-----~~~~~~~~~~~~~~a 63 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILY----KK-TQA-----VE---YNDGAIDTPGEYVE-----NRRLYSALIVTAADA 63 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcccc----cc-cee-----EE---EcCeeecCchhhhh-----hHHHHHHHHHHhhcC
Confidence 79999999999999999999876531 11 111 11 11268999995211 111222333457899
Q ss_pred ceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhH-HHHHHHHHHhcCCCCcEEEcccCCCCCHHHHH
Q 017937 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (363)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~ 275 (363)
|++++|+|++++.......+.... ..|+++|+||+|+.+... .......... .+..+++++||++|.|+++++
T Consensus 64 d~vilv~d~~~~~s~~~~~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 64 DVIALVQSATDPESRFPPGFASIF-----VKPVIGLVTKIDLAEADVDIERAKELLET-AGAEPIFEISSVDEQGLEALV 137 (142)
T ss_pred CEEEEEecCCCCCcCCChhHHHhc-----cCCeEEEEEeeccCCcccCHHHHHHHHHH-cCCCcEEEEecCCCCCHHHHH
Confidence 999999999887644333333322 249999999999965322 2222222322 334479999999999999999
Q ss_pred HHHH
Q 017937 276 DWIL 279 (363)
Q Consensus 276 ~~i~ 279 (363)
++|.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 9875
No 140
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.85 E-value=2.7e-20 Score=157.74 Aligned_cols=155 Identities=17% Similarity=0.212 Sum_probs=103.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|||||||++++.+..+. .....++....... +......+.+|||||. ..+..+. ..++.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~-------~~~~~ 71 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGT--EQFTAMR-------ELYIK 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCc--ccchhhh-------HHHHh
Confidence 7999999999999999999987764 22233333222222 3334467899999994 4444332 33467
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccc-cCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCCCC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g~g 270 (363)
.++++++|+|.+++. +....|.....+. ...+.|+++|+||+|+...+.+. +....+....+..+++++||++|.|
T Consensus 72 ~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~ 151 (168)
T cd04177 72 SGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTN 151 (168)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCC
Confidence 899999999998753 3333333333221 12579999999999997543221 1112222233445899999999999
Q ss_pred HHHHHHHHHhhC
Q 017937 271 VEDIRDWILTKL 282 (363)
Q Consensus 271 i~eL~~~i~~~l 282 (363)
++++|+++.+.+
T Consensus 152 i~~~f~~i~~~~ 163 (168)
T cd04177 152 VDEVFIDLVRQI 163 (168)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 141
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.85 E-value=2.7e-20 Score=156.58 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=103.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|||||||++++++..+. ....+++.+.... ........+.+|||||. ..+.. ....+++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--~~~~~-------~~~~~~~ 70 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQ--EDYAA-------IRDNYHR 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCCh--hhhhH-------HHHHHhh
Confidence 7999999999999999999987764 2333333332222 23334567999999994 33322 2334578
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChh--HHHHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
.+|++++|+|.+++. .....++..+.+.. ..+.|+++|+||+|+.... ........... .+ .+++++||++|.
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~ 148 (164)
T cd04139 71 SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQ-WG-VPYVETSAKTRQ 148 (164)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHH-hC-CeEEEeeCCCCC
Confidence 999999999987643 23344444443321 2579999999999997521 22222222222 23 489999999999
Q ss_pred CHHHHHHHHHhhC
Q 017937 270 GVEDIRDWILTKL 282 (363)
Q Consensus 270 gi~eL~~~i~~~l 282 (363)
|+++++++|.+.+
T Consensus 149 gi~~l~~~l~~~~ 161 (164)
T cd04139 149 NVEKAFYDLVREI 161 (164)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 142
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.85 E-value=2.7e-20 Score=155.79 Aligned_cols=154 Identities=20% Similarity=0.222 Sum_probs=104.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|++|||||||++++++..+. .....++.+......... ...+.+||+||. ..+..+ ....+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~~ 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFV--EEYDPTIEDSYRKTIVVDGETYTLDILDTAGQ--EEFSAM-------RDLYIR 69 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--cCcCCChhHeEEEEEEECCEEEEEEEEECCCh--HHHHHH-------HHHHHh
Confidence 5899999999999999999987743 444445444444444333 467899999994 332222 233477
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccC-CCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCCCCC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~-~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~g~g 270 (363)
.+|++++|+|.+++. .....++........ ...|+++|+||+|+...... .+....+....+ .+++++||++|.|
T Consensus 70 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~ 148 (160)
T cd00876 70 QGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG-CPFIETSAKDNIN 148 (160)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC-CcEEEeccCCCCC
Confidence 899999999998754 223334433333222 47999999999999763221 112222222222 5899999999999
Q ss_pred HHHHHHHHHhhC
Q 017937 271 VEDIRDWILTKL 282 (363)
Q Consensus 271 i~eL~~~i~~~l 282 (363)
+++++++|.+.+
T Consensus 149 i~~l~~~l~~~i 160 (160)
T cd00876 149 IDEVFKLLVREI 160 (160)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 143
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.5e-20 Score=154.12 Aligned_cols=158 Identities=20% Similarity=0.236 Sum_probs=117.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecC-CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
.|+.++|+.|||||+|+.+++.+.|..+.+ +.|...-.-...++....++.+|||+| ++.+..+ .+++++
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaG--qe~frsv-------~~syYr 77 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAG--QESFRSV-------TRSYYR 77 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCC--cHHHHHH-------HHHHhc
Confidence 389999999999999999999999865433 122222222334566678899999999 5555544 556689
Q ss_pred ccceEEEEeeCCCC--CchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHH-HHHHHhcCCCCcEEEcccCCCCCH
Q 017937 195 NADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 195 ~ad~ii~VvD~~~~--~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
.+.++|+|+|++.. +..+..|+.+..+....+.-++|++||+||...+.+.+. -+.+.+..+. .++++||++++||
T Consensus 78 ~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL-ifmETSakt~~~V 156 (216)
T KOG0098|consen 78 GAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL-IFMETSAKTAENV 156 (216)
T ss_pred cCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc-eeehhhhhhhhhH
Confidence 99999999999864 466778888776665578889999999999876655332 3344444444 6889999999999
Q ss_pred HHHHHHHHhhCC
Q 017937 272 EDIRDWILTKLP 283 (363)
Q Consensus 272 ~eL~~~i~~~l~ 283 (363)
++.|..+...+.
T Consensus 157 EEaF~nta~~Iy 168 (216)
T KOG0098|consen 157 EEAFINTAKEIY 168 (216)
T ss_pred HHHHHHHHHHHH
Confidence 999987765553
No 144
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.84 E-value=1.4e-20 Score=159.05 Aligned_cols=155 Identities=19% Similarity=0.218 Sum_probs=99.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceE--EEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR--HRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|||||||++++++..+. ...+.++. ......+......+.+|||||....... ....+++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI--GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE--------QLERSIR 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc--cccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc--------hHHHHHH
Confidence 5899999999999999999986653 23333332 2222233444467889999995321111 1233467
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccc--cCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCC-
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGD--HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG- 268 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~--~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g- 268 (363)
.+|++++|+|+++.. .....|+...... ...+.|+++|+||+|+.....+. +....+....+ .+++++||++|
T Consensus 71 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~ 149 (165)
T cd04146 71 WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELG-CLFFEVSAAEDY 149 (165)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcC-CEEEEeCCCCCc
Confidence 899999999998753 2233333222211 12479999999999986433221 11222222233 47999999999
Q ss_pred CCHHHHHHHHHhhC
Q 017937 269 HGVEDIRDWILTKL 282 (363)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (363)
.|++++|+.|.+.+
T Consensus 150 ~~v~~~f~~l~~~~ 163 (165)
T cd04146 150 DGVHSVFHELCREV 163 (165)
T ss_pred hhHHHHHHHHHHHH
Confidence 49999999998765
No 145
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.84 E-value=6.9e-20 Score=155.20 Aligned_cols=151 Identities=23% Similarity=0.257 Sum_probs=102.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
+|+++|.+|||||||+++|.+.......++.+.+ ...+...+..+.+|||||. ..+. ..+..++..|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~~~i~D~~G~--~~~~-------~~~~~~~~~a 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGG--ANFR-------GIWVNYYAEA 67 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccce----EEEEEECCEEEEEEECCCc--HHHH-------HHHHHHHcCC
Confidence 3899999999999999999986322222222332 2234456789999999994 3322 2345678999
Q ss_pred ceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHH-----H-hcCCCCcEEEcccCC
Q 017937 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWY-----E-KFTDVDEVIPVSAKY 267 (363)
Q Consensus 197 d~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~-----~-~~~~~~~i~~vSAk~ 267 (363)
|+++||+|+++.. .....++...+... ..++|+++|+||+|+.......+....+ . .......+++|||++
T Consensus 68 ~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~ 147 (167)
T cd04161 68 HGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIE 147 (167)
T ss_pred CEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEcee
Confidence 9999999998753 33344455444331 1478999999999997654333332221 1 111234688899999
Q ss_pred C------CCHHHHHHHHHh
Q 017937 268 G------HGVEDIRDWILT 280 (363)
Q Consensus 268 g------~gi~eL~~~i~~ 280 (363)
| .|+.+.++||.+
T Consensus 148 g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 148 GLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCccccCHHHHHHHHhc
Confidence 8 899999999975
No 146
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.84 E-value=4.7e-20 Score=154.72 Aligned_cols=148 Identities=14% Similarity=0.190 Sum_probs=98.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|++|||||||+.+++...+... .+. +....... +......+.+|||+|.. . ..+++
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~--~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~~--~------------~~~~~ 64 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL--ESP-EGGRFKKEVLVDGQSHLLLIRDEGGAP--D------------AQFAS 64 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC--CCC-CccceEEEEEECCEEEEEEEEECCCCC--c------------hhHHh
Confidence 799999999999999999988766422 111 11111122 22333678999999952 1 11256
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCC--hhHHHH-HHHHHHhcCCCCcEEEcccCCC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIK--PGEIAK-KLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~--~~~~~~-~~~~~~~~~~~~~i~~vSAk~g 268 (363)
.+|++++|+|.++.. +....|+....... ..+.|+++|+||+|+.. .+.+.. ....+.+..+..++++|||++|
T Consensus 65 ~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 144 (158)
T cd04103 65 WVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYG 144 (158)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCC
Confidence 899999999999765 44444544443321 14689999999999842 222221 1223333333458999999999
Q ss_pred CCHHHHHHHHHhh
Q 017937 269 HGVEDIRDWILTK 281 (363)
Q Consensus 269 ~gi~eL~~~i~~~ 281 (363)
.||+++|+.+.+.
T Consensus 145 ~~i~~~f~~~~~~ 157 (158)
T cd04103 145 LNVERVFQEAAQK 157 (158)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999865
No 147
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=7.1e-20 Score=163.77 Aligned_cols=172 Identities=23% Similarity=0.276 Sum_probs=134.0
Q ss_pred CCCCCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHH
Q 017937 109 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (363)
Q Consensus 109 ~~~~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~ 188 (363)
+.-+...+.|+|.|+||||||||++++.+.+.. +.++|.||+....+++..+..+++++||||+.+.+...++..-.+.
T Consensus 162 P~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qA 240 (346)
T COG1084 162 PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQA 240 (346)
T ss_pred CCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCc-cCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHH
Confidence 333445668999999999999999999998865 7899999999999999999999999999999987777776665555
Q ss_pred HHhhccccceEEEEeeCCCCC----chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcc
Q 017937 189 VRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (363)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~----~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vS 264 (363)
+...-.-.++|+|++|.+... +.+...+.+.... .+.|+++|+||+|....+.+.+....+.... ......+|
T Consensus 241 i~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~--f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~-~~~~~~~~ 317 (346)
T COG1084 241 ILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL--FKAPIVVVINKIDIADEEKLEEIEASVLEEG-GEEPLKIS 317 (346)
T ss_pred HHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh--cCCCeEEEEecccccchhHHHHHHHHHHhhc-ccccccee
Confidence 555556788999999998654 3333334333333 3489999999999998777766655554433 23457789
Q ss_pred cCCCCCHHHHHHHHHhhCCC
Q 017937 265 AKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 265 Ak~g~gi~eL~~~i~~~l~~ 284 (363)
+..+.+++.+.+.+......
T Consensus 318 ~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 318 ATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred eeehhhHHHHHHHHHHHhhc
Confidence 99999999999888877543
No 148
>PLN03108 Rab family protein; Provisional
Probab=99.84 E-value=5e-20 Score=161.93 Aligned_cols=159 Identities=19% Similarity=0.187 Sum_probs=105.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEE--EEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
..+|+++|++|||||||+++|.+..+... ..+....+.. ...+......+.+|||||. ..+..+ ...+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~-~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~--~~~~~~-------~~~~ 75 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDNKPIKLQIWDTAGQ--ESFRSI-------TRSY 75 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCccceEEEEEEEECCEEEEEEEEeCCCc--HHHHHH-------HHHH
Confidence 35899999999999999999998876532 2222222222 2223333467889999994 333222 3445
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
++.+|++|+|+|+++.. .....|+.........+.|+++|+||+|+.....+. +....+....+ .+++++||++|.
T Consensus 76 ~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~ 154 (210)
T PLN03108 76 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQ 154 (210)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 78899999999998754 333344444333223578999999999997533221 11222222233 489999999999
Q ss_pred CHHHHHHHHHhhCCC
Q 017937 270 GVEDIRDWILTKLPL 284 (363)
Q Consensus 270 gi~eL~~~i~~~l~~ 284 (363)
|++++|+++.+.+..
T Consensus 155 ~v~e~f~~l~~~~~~ 169 (210)
T PLN03108 155 NVEEAFIKTAAKIYK 169 (210)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999877643
No 149
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.84 E-value=8.4e-20 Score=151.69 Aligned_cols=157 Identities=27% Similarity=0.391 Sum_probs=102.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.+|+++|.+|+|||||++++.+.. ......++++.......+..++ ..+.+|||||+ ..+..+.......+...+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~~~~~~~~~~~~i 78 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ--EDYRAIRRLYYRAVESSL 78 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCc--ccchHHHHHHHhhhhEEE
Confidence 489999999999999999999988 4456667777777665555555 78899999994 344444333333333333
Q ss_pred cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHH
Q 017937 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~e 273 (363)
...|++++|+|..+........+..... .+.|+++|+||+|+............+.. .+..+++++||++|.|+.+
T Consensus 79 ~~~d~~~~v~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~gv~~ 154 (161)
T TIGR00231 79 RVFDIVILVLDVEEILEKQTKEIIHHAE---SNVPIILVGNKIDLRDAKLKTHVAFLFAK-LNGEPIIPLSAETGKNIDS 154 (161)
T ss_pred EEEEEeeeehhhhhHhHHHHHHHHHhcc---cCCcEEEEEEcccCCcchhhHHHHHHHhh-ccCCceEEeecCCCCCHHH
Confidence 3444444444443322222222333222 27899999999999864422222233333 3445799999999999999
Q ss_pred HHHHHH
Q 017937 274 IRDWIL 279 (363)
Q Consensus 274 L~~~i~ 279 (363)
++++|.
T Consensus 155 ~~~~l~ 160 (161)
T TIGR00231 155 AFKIVE 160 (161)
T ss_pred HHHHhh
Confidence 999874
No 150
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.84 E-value=4.1e-20 Score=156.14 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=101.5
Q ss_pred EEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccc
Q 017937 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (363)
Q Consensus 118 i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad 197 (363)
|+++|.+|||||||++++.+..+.. ...|..... ...+...+..+.+|||||. ..+..+ +..+++.+|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~-~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~~ad 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLE-SVVPTTGFN--SVAIPTQDAIMELLEIGGS--QNLRKY-------WKRYLSGSQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcc-cccccCCcc--eEEEeeCCeEEEEEECCCC--cchhHH-------HHHHHhhCC
Confidence 7999999999999999999876531 111111111 2234556789999999994 333322 345588999
Q ss_pred eEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHH-----HHHhcCCCCcEEEcccCC---
Q 017937 198 CIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLE-----WYEKFTDVDEVIPVSAKY--- 267 (363)
Q Consensus 198 ~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~-----~~~~~~~~~~i~~vSAk~--- 267 (363)
++++|+|++++. .....++....... .++|+++|+||+|+.......+... .+... ....++++||++
T Consensus 70 ~ii~V~D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~Sa~~~~s 147 (164)
T cd04162 70 GLIFVVDSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARG-RRWILQGTSLDDDGS 147 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCC-CceEEEEeeecCCCC
Confidence 999999998754 33444555554332 6799999999999976544433221 12121 234688888888
Q ss_pred ---CCCHHHHHHHHHh
Q 017937 268 ---GHGVEDIRDWILT 280 (363)
Q Consensus 268 ---g~gi~eL~~~i~~ 280 (363)
++||+++|+.++.
T Consensus 148 ~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 148 PSRMEAVKDLLSQLIN 163 (164)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999998864
No 151
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.84 E-value=1e-19 Score=184.97 Aligned_cols=203 Identities=18% Similarity=0.198 Sum_probs=134.0
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 112 ~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
..|+|.|+++|++++|||||+++|.+.++. .....+.|.+.....+.+.+..++||||||+ ..|..+ +..
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGh--e~F~~m-------~~r 356 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGH--EAFTAM-------RAR 356 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCC--ccchhH-------HHh
Confidence 358889999999999999999999987764 3445666766655556666789999999995 344333 234
Q ss_pred hccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh--HHHHHHHHH----HhcCCCCcEEEccc
Q 017937 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWY----EKFTDVDEVIPVSA 265 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~----~~~~~~~~i~~vSA 265 (363)
.+..+|++|+|+|++++.............. .++|+|+|+||+|+...+ .+....... ..+.+..+++++||
T Consensus 357 ga~~aDiaILVVdAddGv~~qT~e~i~~a~~--~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSA 434 (787)
T PRK05306 357 GAQVTDIVVLVVAADDGVMPQTIEAINHAKA--AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSA 434 (787)
T ss_pred hhhhCCEEEEEEECCCCCCHhHHHHHHHHHh--cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeC
Confidence 4788999999999998775555444455444 679999999999996432 222111111 11223468999999
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHh-hccCCCCCceEEEEEEEEecCCCee
Q 017937 266 KYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKTRPTAKD 338 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~-~~~~evp~s~~i~~~~~~~~~~~~~ 338 (363)
++|.|+++|+++|............ .+.+.+. .++. ...+..|..+.+.+..+....+..+
T Consensus 435 ktG~GI~eLle~I~~~~e~~~l~~~----~~~~~~g--------~V~es~~dkg~G~v~~v~V~sGtLk~Gd~v 496 (787)
T PRK05306 435 KTGEGIDELLEAILLQAEVLELKAN----PDRPARG--------TVIEAKLDKGRGPVATVLVQNGTLKVGDIV 496 (787)
T ss_pred CCCCCchHHHHhhhhhhhhhhcccC----CCCCcEE--------EEEEEEEcCCCeEEEEEEEecCeEecCCEE
Confidence 9999999999998753211000000 0111110 1111 1245677778888888888876444
No 152
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.84 E-value=7.8e-20 Score=153.35 Aligned_cols=146 Identities=16% Similarity=0.149 Sum_probs=99.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
+|+++|.+|||||||+|+|.+.... . ..|... .+... .+|||||..... ..+...+...+..+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~~v---~~~~~----~~iDtpG~~~~~-----~~~~~~~~~~~~~a 65 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQAV---EFNDK----GDIDTPGEYFSH-----PRWYHALITTLQDV 65 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccceEE---EECCC----CcccCCccccCC-----HHHHHHHHHHHhcC
Confidence 7999999999999999999876421 1 112111 11111 269999963221 11223334457899
Q ss_pred ceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHH
Q 017937 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (363)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~ 276 (363)
|++++|+|+++.......++.... .++|+++++||+|+...+ .....+++.......+++++||++|+|+++|++
T Consensus 66 d~il~v~d~~~~~s~~~~~~~~~~----~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 66 DMLIYVHGANDPESRLPAGLLDIG----VSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred CEEEEEEeCCCcccccCHHHHhcc----CCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 999999999876544444444321 467999999999996532 333344444443335899999999999999999
Q ss_pred HHHhhCCC
Q 017937 277 WILTKLPL 284 (363)
Q Consensus 277 ~i~~~l~~ 284 (363)
+|.+.+..
T Consensus 141 ~l~~~~~~ 148 (158)
T PRK15467 141 YLASLTKQ 148 (158)
T ss_pred HHHHhchh
Confidence 99988854
No 153
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.84 E-value=3.3e-20 Score=148.20 Aligned_cols=166 Identities=19% Similarity=0.202 Sum_probs=117.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCC-CCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
...+|.++|.+|||||||+-++....|....+. .|.......-.++....++.+|||+| +++|..+ ..++
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG--qErFRtL-------TpSy 80 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG--QERFRTL-------TPSY 80 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccc--hHhhhcc-------CHhH
Confidence 345999999999999999999999887532222 23333333444566778999999999 6777665 3455
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHH--HHHHHHhcCCCCcEEEcccCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK--KLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~--~~~~~~~~~~~~~i~~vSAk~ 267 (363)
++.|.++|+|+|++... ..++.|+.++--.. ..++-.++|+||+|..+.+.+.. -....++ . ..-++++||++
T Consensus 81 yRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~-h-~~LFiE~SAkt 158 (209)
T KOG0080|consen 81 YRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARK-H-RCLFIECSAKT 158 (209)
T ss_pred hccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHh-h-CcEEEEcchhh
Confidence 89999999999998654 55555555432211 24566789999999875444322 2233333 2 24689999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCCCC
Q 017937 268 GHGVEDIRDWILTKLPLGPAYYP 290 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~~~~~~~ 290 (363)
.+||...|+.++.++.+.|....
T Consensus 159 ~~~V~~~FeelveKIi~tp~l~~ 181 (209)
T KOG0080|consen 159 RENVQCCFEELVEKIIETPSLWE 181 (209)
T ss_pred hccHHHHHHHHHHHHhcCcchhh
Confidence 99999999999999987765544
No 154
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.83 E-value=5.8e-20 Score=162.68 Aligned_cols=155 Identities=24% Similarity=0.274 Sum_probs=100.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccccc-eecCCCCc-eEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLS-IVTNKPQT-TRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~-~~~~~~~~-t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|||||||++++.+..+. ......+. ........+......+.+|||||.. ..+.. .++.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~----~~~~~-------~~~~ 70 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE----MWTED-------SCMQ 70 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc----hHHHh-------HHhh
Confidence 7999999999999999999876653 11111111 1112222334456789999999953 11111 1244
Q ss_pred -ccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHH-HHHHHHhcCCCCcEEEcccCCCC
Q 017937 195 -NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 195 -~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
.+|++++|+|+++.. .....++..+.... ..+.|+++|+||+|+.....+.. ....+....+ .+++++||++|.
T Consensus 71 ~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~SA~~~~ 149 (221)
T cd04148 71 YQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFD-CKFIETSAGLQH 149 (221)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 899999999998754 22334433332221 15799999999999975443211 1122222223 479999999999
Q ss_pred CHHHHHHHHHhhCC
Q 017937 270 GVEDIRDWILTKLP 283 (363)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (363)
||++++++|.+.+.
T Consensus 150 gv~~l~~~l~~~~~ 163 (221)
T cd04148 150 NVDELLEGIVRQIR 163 (221)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998875
No 155
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.83 E-value=1.2e-19 Score=154.35 Aligned_cols=154 Identities=21% Similarity=0.338 Sum_probs=103.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|++|||||||++++.+..+.......+.+. ..+...+..+.+|||||. ..+ ...+..++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~----~~i~~~~~~~~~~D~~G~--~~~-------~~~~~~~~ 79 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI----KTVQSDGFKLNVWDIGGQ--RAI-------RPYWRNYF 79 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce----EEEEECCEEEEEEECCCC--HHH-------HHHHHHHh
Confidence 45689999999999999999999976543333333222 223344688999999994 222 12344457
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHhc---CCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSAk~ 267 (363)
..+|++++|+|+++.. .....++...+... ..+.|+++++||+|+.......+....+... ....+++++||++
T Consensus 80 ~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04155 80 ENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKT 159 (173)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCC
Confidence 8999999999998643 22233333333221 2468999999999997654343333332211 1123578999999
Q ss_pred CCCHHHHHHHHHh
Q 017937 268 GHGVEDIRDWILT 280 (363)
Q Consensus 268 g~gi~eL~~~i~~ 280 (363)
|+|++++++||.+
T Consensus 160 ~~gi~~~~~~l~~ 172 (173)
T cd04155 160 GEGLQEGMNWVCK 172 (173)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999999975
No 156
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.83 E-value=1.9e-19 Score=156.27 Aligned_cols=146 Identities=19% Similarity=0.208 Sum_probs=97.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc--cccee-------------cCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhH
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ--KLSIV-------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~--~~~~~-------------~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~ 181 (363)
+|+++|.+|||||||+++|++. .+... ....++|.......+...+..+.+|||||+ ..+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~--~~~~-- 79 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH--ADFG-- 79 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCc--HHHH--
Confidence 7999999999999999999973 22211 012344544444455667789999999995 3322
Q ss_pred HHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhH---HHHHHHHHHhc----
Q 017937 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKF---- 254 (363)
Q Consensus 182 ~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~~~~~~---- 254 (363)
..+..+++.+|++++|+|++++......++...... .+.|+++|+||+|+..... ..+....+...
T Consensus 80 -----~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (194)
T cd01891 80 -----GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATE 152 (194)
T ss_pred -----HHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCcc
Confidence 234456789999999999988654444444444333 5789999999999964322 22223332211
Q ss_pred -CCCCcEEEcccCCCCCHHH
Q 017937 255 -TDVDEVIPVSAKYGHGVED 273 (363)
Q Consensus 255 -~~~~~i~~vSAk~g~gi~e 273 (363)
....+++++||++|.|+.+
T Consensus 153 ~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 153 EQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred ccCccCEEEeehhccccccc
Confidence 1134899999999977643
No 157
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.83 E-value=1.6e-19 Score=150.19 Aligned_cols=159 Identities=33% Similarity=0.375 Sum_probs=114.5
Q ss_pred EEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccce
Q 017937 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (363)
Q Consensus 120 i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ 198 (363)
++|.+|+|||||+++|.+.........+++|........... ...+.+|||||+.... .........+..++..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~--~~~~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAG--GLGREREELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccc--cchhhHHHHHHHHHHhCCE
Confidence 589999999999999999877656677777776665555443 6789999999974322 1222122345556789999
Q ss_pred EEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHH---HHHHhcCCCCcEEEcccCCCCCHHHHH
Q 017937 199 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL---EWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (363)
Q Consensus 199 ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~---~~~~~~~~~~~i~~vSAk~g~gi~eL~ 275 (363)
+++|+|+..........+...... .+.|+++|+||+|+.......... ..........+++++||+++.|+++++
T Consensus 79 il~v~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 79 ILFVVDADLRADEEEEKLLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 999999998765544432333333 679999999999998766554432 222233345689999999999999999
Q ss_pred HHHHhhC
Q 017937 276 DWILTKL 282 (363)
Q Consensus 276 ~~i~~~l 282 (363)
++|.+.+
T Consensus 157 ~~l~~~~ 163 (163)
T cd00880 157 EALIEAL 163 (163)
T ss_pred HHHHhhC
Confidence 9998753
No 158
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.83 E-value=2.6e-19 Score=156.50 Aligned_cols=160 Identities=23% Similarity=0.292 Sum_probs=101.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcccc--ceecCCCCceEEEEEEEEe---------------------------CCC-----
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKL--SIVTNKPQTTRHRILGICS---------------------------GPE----- 162 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~--~~~~~~~~~t~~~~~~~~~---------------------------~~~----- 162 (363)
+|+++|+.|+|||||+.+|.+... .......+.|.......+. ..+
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 699999999999999999976421 0000111111111000000 012
Q ss_pred -eeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCC-CchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 163 -YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 163 -~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~-~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
.++.||||||+ .. +...+...+..+|++++|+|++++ ...........+... ...|+++|+||+|+..
T Consensus 82 ~~~i~~iDtPG~--~~-------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 82 VRHVSFVDCPGH--EI-------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GLKHIIIVQNKIDLVK 151 (203)
T ss_pred ccEEEEEECCCh--HH-------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CCCcEEEEEEchhccC
Confidence 68999999994 22 345566667899999999999874 222222222222221 2357999999999986
Q ss_pred hhHHHHHHHHHHhc-----CCCCcEEEcccCCCCCHHHHHHHHHhhCCCCC
Q 017937 241 PGEIAKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (363)
Q Consensus 241 ~~~~~~~~~~~~~~-----~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~ 286 (363)
........+.+... ....+++++||++|.|+++|+++|.+.++.+|
T Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 152 EEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 54433322222221 12357999999999999999999999998754
No 159
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.83 E-value=2.7e-19 Score=180.33 Aligned_cols=219 Identities=14% Similarity=0.147 Sum_probs=137.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--Ee--CCCeeEEEEeCCCCchhhhhhHHHHHHHH
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CS--GPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~ 188 (363)
.+.+.|+++|++|+|||||+++|.+..+.. ....+.|.+..... +. ..+..+.||||||+ ..+.. .
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh--e~F~~-------m 311 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH--EAFSS-------M 311 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcH--HHHHH-------H
Confidence 377799999999999999999999877652 33445554322211 22 24588999999994 44332 3
Q ss_pred HHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHH-------hcCCCCcEE
Q 017937 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE-------KFTDVDEVI 261 (363)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~-------~~~~~~~i~ 261 (363)
+..++..+|++|+|+|++++...........+.. .+.|+|+|+||+|+.... .......+. ...+..+++
T Consensus 312 r~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~--~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv 388 (742)
T CHL00189 312 RSRGANVTDIAILIIAADDGVKPQTIEAINYIQA--ANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMI 388 (742)
T ss_pred HHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh--cCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEE
Confidence 3445789999999999988765554444444444 679999999999997532 111222221 122346899
Q ss_pred EcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHh-hccCCCCCceEEEEEEEEecCCCeeEE
Q 017937 262 PVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKTRPTAKDFI 340 (363)
Q Consensus 262 ~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~-~~~~evp~s~~i~~~~~~~~~~~~~~i 340 (363)
++||++|.|+++|+++|......... ... .+.+... .++. ...+..|..+.+.+..+..+.+..+.+
T Consensus 389 ~VSAktG~GIdeLle~I~~l~e~~~l-k~~---~~~~~~g--------~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~ 456 (742)
T CHL00189 389 PISASQGTNIDKLLETILLLAEIEDL-KAD---PTQLAQG--------IILEAHLDKTKGPVATILVQNGTLHIGDIIVI 456 (742)
T ss_pred EEECCCCCCHHHHHHhhhhhhhhhcc-cCC---CCCCceE--------EEEEEEEcCCCceEEEEEEEcCEEecCCEEEE
Confidence 99999999999999999876431110 000 0011000 0111 124567777788888888887654432
Q ss_pred EEEEEEeeCCceeEEecCCCC
Q 017937 341 QVEIVVEKNSQKIILIGKVSP 361 (363)
Q Consensus 341 ~~~i~~~~~~q~~ivig~~G~ 361 (363)
. .+.++.+.+.|..|.
T Consensus 457 g-----~~~gkVr~m~~~~~~ 472 (742)
T CHL00189 457 G-----TSYAKIRGMINSLGN 472 (742)
T ss_pred C-----CcceEEEEEEcCCCc
Confidence 1 233445555555544
No 160
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.83 E-value=2.8e-19 Score=170.02 Aligned_cols=190 Identities=24% Similarity=0.298 Sum_probs=135.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe------------------------CCCeeEEEEeCC
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS------------------------GPEYQMILYDTP 171 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~------------------------~~~~~i~l~Dtp 171 (363)
.+|+++|.||||||||+|+|++.... +..++++|.++..+... ....++.+||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~-~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVE-IANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc-ccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 37999999999999999999998764 57889999877766532 122568899999
Q ss_pred CCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCC---------------CchHH-------H---------------
Q 017937 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA---------------PERID-------E--------------- 214 (363)
Q Consensus 172 G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~---------------~~~~~-------~--------------- 214 (363)
|+....... ..+...+...++.||++++|+|+... ..... .
T Consensus 81 Gl~~ga~~g--~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~ 158 (396)
T PRK09602 81 GLVPGAHEG--RGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSR 158 (396)
T ss_pred CcCCCccch--hhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 986432111 11223445568899999999999721 00000 0
Q ss_pred ---------------H----------HHHhccc----------------------cCCCCCEEEEEcCCCCCChhH-HHH
Q 017937 215 ---------------I----------LEEGVGD----------------------HKDKLPILLVLNKKDLIKPGE-IAK 246 (363)
Q Consensus 215 ---------------~----------~~~~~~~----------------------~~~~~piilV~NK~Dl~~~~~-~~~ 246 (363)
. +.+.++. ....+|+++|+||+|+..... +..
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~~ 238 (396)
T PRK09602 159 KAQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEENIER 238 (396)
T ss_pred HHhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHHH
Confidence 0 1111110 113589999999999864332 222
Q ss_pred HHHHHHhcCCCCcEEEcccCCCCCHHH-HHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhcc
Q 017937 247 KLEWYEKFTDVDEVIPVSAKYGHGVED-IRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYR 316 (363)
Q Consensus 247 ~~~~~~~~~~~~~i~~vSAk~g~gi~e-L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~ 316 (363)
+... +...++++||+.+.|+++ +++.+.+.++.++++|+.+++++++.+ +.|++| ++|..+.
T Consensus 239 ----i~~~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r--~~E~IR-k~l~~~g 301 (396)
T PRK09602 239 ----LKEE-KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKK--ALEYIR-EVLKKYG 301 (396)
T ss_pred ----HHhc-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHH--HHHHHH-HHHHHhC
Confidence 2222 455799999999999999 999999999999999999999999988 889999 7777654
No 161
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.83 E-value=2.2e-19 Score=149.62 Aligned_cols=151 Identities=20% Similarity=0.284 Sum_probs=101.5
Q ss_pred EEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccc
Q 017937 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (363)
Q Consensus 118 i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad 197 (363)
|+++|++|||||||+|+|.+.++.. ...+...... .....++..+.+|||||. ..+. ..+..++..+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~D~~g~--~~~~-------~~~~~~~~~~d 69 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-DTIPTVGFNM--RKVTKGNVTLKVWDLGGQ--PRFR-------SMWERYCRGVN 69 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-CccCCCCcce--EEEEECCEEEEEEECCCC--HhHH-------HHHHHHHhcCC
Confidence 7999999999999999999987642 2222222221 123344588999999994 3222 23445578999
Q ss_pred eEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcccCCCCCH
Q 017937 198 CIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 198 ~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSAk~g~gi 271 (363)
++++|+|+++.. .....++....... ..++|+++|+||+|+.+..........+.. .....+++++||++|.|+
T Consensus 70 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 70 AIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNI 149 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCCh
Confidence 999999998643 22223444443321 146899999999999765443333322211 112347899999999999
Q ss_pred HHHHHHHHh
Q 017937 272 EDIRDWILT 280 (363)
Q Consensus 272 ~eL~~~i~~ 280 (363)
++++++|.+
T Consensus 150 ~~l~~~l~~ 158 (159)
T cd04159 150 DIVLDWLIK 158 (159)
T ss_pred HHHHHHHhh
Confidence 999999975
No 162
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.83 E-value=1.6e-19 Score=156.66 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=98.0
Q ss_pred cEEEEEcCCCCChHHHHH-HHhccccce---ecCCCCceE--EEE--E--------EEEeCCCeeEEEEeCCCCchhhhh
Q 017937 116 GYVAVLGKPNVGKSTLAN-QMIGQKLSI---VTNKPQTTR--HRI--L--------GICSGPEYQMILYDTPGIIEKKIH 179 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln-~l~~~~~~~---~~~~~~~t~--~~~--~--------~~~~~~~~~i~l~DtpG~~~~~~~ 179 (363)
.+|+++|.+|||||||+. ++.+..+.. ......|.. +.. . ..+......+.+|||+|... .
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~-~-- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD-K-- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh-h--
Confidence 389999999999999996 565543310 111222221 111 1 12344567899999999521 1
Q ss_pred hHHHHHHHHHHhhccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCCh----------------
Q 017937 180 MLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP---------------- 241 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~---------------- 241 (363)
+ ...+++++|++++|+|+++.. ......|...++....+.|+++|+||+|+...
T Consensus 80 -~-------~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~ 151 (195)
T cd01873 80 -D-------RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPI 151 (195)
T ss_pred -h-------hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccccccccc
Confidence 1 123578999999999998764 33332233333332257899999999998631
Q ss_pred ---hHH-HHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhh
Q 017937 242 ---GEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (363)
Q Consensus 242 ---~~~-~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~ 281 (363)
+.+ .+....+.+..+. ++++|||++|.||+++|+.+++.
T Consensus 152 ~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 152 KNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 111 1122333444444 89999999999999999999864
No 163
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.82 E-value=2.9e-19 Score=177.63 Aligned_cols=201 Identities=18% Similarity=0.194 Sum_probs=129.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCe-eEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
.|+++|+++|++|+|||||+++|.+.++. ....++.|.+.....+...+. .+.+|||||+ ..+..+ +..
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGh--e~F~~~-------r~r 154 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGH--EAFTSM-------RAR 154 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCC--cchhhH-------HHh
Confidence 37789999999999999999999988765 344566776655444444333 8999999995 344333 234
Q ss_pred hccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCCh--hHHHHHHHHH----HhcCCCCcEEEccc
Q 017937 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWY----EKFTDVDEVIPVSA 265 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~--~~~~~~~~~~----~~~~~~~~i~~vSA 265 (363)
.+..+|++++|+|++++............+. .++|+++++||+|+... +.+....... ..+.+..+++++||
T Consensus 155 ga~~aDiaILVVda~dgv~~qT~e~i~~~~~--~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSA 232 (587)
T TIGR00487 155 GAKVTDIVVLVVAADDGVMPQTIEAISHAKA--ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSA 232 (587)
T ss_pred hhccCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEEC
Confidence 4789999999999988775555444444444 57999999999999642 2222221111 11222357999999
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhc-cCCCCCceEEEEEEEEecCCCe
Q 017937 266 KYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQY-RNEVPYACQVNVVSYKTRPTAK 337 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~-~~evp~s~~i~~~~~~~~~~~~ 337 (363)
++|.|+++|+++|.....-..... ..+.|.+.. ++... .+..|..+.+.+..+..+.+..
T Consensus 233 ktGeGI~eLl~~I~~~~~~~~l~~----~~~~~~~~~--------V~ev~~~~g~G~v~~~~V~~GtL~~Gd~ 293 (587)
T TIGR00487 233 LTGDGIDELLDMILLQSEVEELKA----NPNGQASGV--------VIEAQLDKGRGPVATVLVQSGTLRVGDI 293 (587)
T ss_pred CCCCChHHHHHhhhhhhhhccccC----CCCCCceeE--------EEEEEEeCCCcEEEEEEEEeCEEeCCCE
Confidence 999999999999875321100000 011222211 11211 3456777777777887776543
No 164
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.82 E-value=2e-19 Score=153.47 Aligned_cols=155 Identities=26% Similarity=0.344 Sum_probs=109.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|..||||||++++|.......+.+ |.......+...+..+.+||.+| +..+.. .+..++
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~~~p----T~g~~~~~i~~~~~~~~~~d~gG--~~~~~~-------~w~~y~ 79 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISETIP----TIGFNIEEIKYKGYSLTIWDLGG--QESFRP-------LWKSYF 79 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEEEEE----ESSEEEEEEEETTEEEEEEEESS--SGGGGG-------GGGGGH
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccccCc----ccccccceeeeCcEEEEEEeccc--cccccc-------cceeec
Confidence 56699999999999999999999876543222 22233334555789999999999 444333 355568
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHH--hc--CCCCcEEEcccC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--KF--TDVDEVIPVSAK 266 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~--~~--~~~~~i~~vSAk 266 (363)
..+|++|||+|+++.. ......+...+... ..++|++|++||+|+.......+....+. .. .....++.|||+
T Consensus 80 ~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~ 159 (175)
T PF00025_consen 80 QNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAK 159 (175)
T ss_dssp TTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTT
T ss_pred cccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeecc
Confidence 8999999999998753 33344444544432 25799999999999976444333333322 11 234578999999
Q ss_pred CCCCHHHHHHHHHhh
Q 017937 267 YGHGVEDIRDWILTK 281 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~ 281 (363)
+|+|+.+.++||.+.
T Consensus 160 ~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 160 TGEGVDEGLEWLIEQ 174 (175)
T ss_dssp TTBTHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhc
Confidence 999999999999875
No 165
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.82 E-value=4.2e-19 Score=156.67 Aligned_cols=170 Identities=18% Similarity=0.206 Sum_probs=111.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce-ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
...+|+++|.+|||||||+++++...+.. ..+..+............+...+.+|||+|. ..+..+. ..+
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~--~~~~~~~-------~~~ 78 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ--EKFGGLR-------DGY 78 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCc--hhhhhhh-------HHH
Confidence 44599999999999999999877655431 1222222222222233455688999999994 3333332 334
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~g 270 (363)
+..++++++|+|.++.. .....|+....+. ..+.|+++|+||+|+.......+..... ...+ ..++++||++|.|
T Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~i~lv~nK~Dl~~~~~~~~~~~~~-~~~~-~~~~e~Sa~~~~~ 155 (215)
T PTZ00132 79 YIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV-CENIPIVLVGNKVDVKDRQVKARQITFH-RKKN-LQYYDISAKSNYN 155 (215)
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccCccccCCHHHHHHH-HHcC-CEEEEEeCCCCCC
Confidence 67899999999998654 2233343333222 2568999999999986432212222222 2223 4789999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCC
Q 017937 271 VEDIRDWILTKLPLGPAYYPKDIVS 295 (363)
Q Consensus 271 i~eL~~~i~~~l~~~~~~~~~~~~~ 295 (363)
++++|.+|.+.+...|..+-.+..+
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~ 180 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPA 180 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcc
Confidence 9999999999988777655444333
No 166
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.82 E-value=1.9e-19 Score=155.37 Aligned_cols=157 Identities=20% Similarity=0.207 Sum_probs=101.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|+|||||+++|....+.. ....+........ +......+.+|||||. ..+..... ..+.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~--~~~~~~~~-------~~~~ 71 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQ--EEYERLRP-------LSYS 71 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCC--hhccccch-------hhcC
Confidence 89999999999999999998666532 1222222222222 2333456889999995 33322211 2368
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChh----------HH-HHHHHHHHhcCCCCcEE
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----------EI-AKKLEWYEKFTDVDEVI 261 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~----------~~-~~~~~~~~~~~~~~~i~ 261 (363)
.+|++++|+|.++.. ......|...++....+.|+++|+||+|+.... .+ ......+.+..+..++|
T Consensus 72 ~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (187)
T cd04129 72 KAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYM 151 (187)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEE
Confidence 899999999997653 233222333333323579999999999985311 00 11122333334555799
Q ss_pred EcccCCCCCHHHHHHHHHhhCCC
Q 017937 262 PVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 262 ~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
+|||++|.|++++|+++.+.+..
T Consensus 152 e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 152 ECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999976643
No 167
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.82 E-value=2.3e-19 Score=153.72 Aligned_cols=156 Identities=22% Similarity=0.312 Sum_probs=102.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
+|+++|.+|||||||++++.+..+. .....++....... .....+.+.+|||||. ..+..+ ...++.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~~ 71 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFV--ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQ--DEYSIL-------PQKYSI 71 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--cccCcchhhhEEEEEEECCEEEEEEEEECCCh--HhhHHH-------HHHHHh
Confidence 8999999999999999999987753 22333332221222 2223467899999995 333222 233467
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCCCC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g~g 270 (363)
.++++++|+|.++.. +....++...++.. ..+.|+++|+||+|+...+.+. .....+....+ .+++++||++|.|
T Consensus 72 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 150 (180)
T cd04137 72 GIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWG-AAFLESSARENEN 150 (180)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Confidence 899999999998753 33334444443322 2568999999999997433221 11122222222 4799999999999
Q ss_pred HHHHHHHHHhhCCC
Q 017937 271 VEDIRDWILTKLPL 284 (363)
Q Consensus 271 i~eL~~~i~~~l~~ 284 (363)
+.+++.+|.+.+..
T Consensus 151 v~~l~~~l~~~~~~ 164 (180)
T cd04137 151 VEEAFELLIEEIEK 164 (180)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
No 168
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.82 E-value=1.5e-19 Score=152.06 Aligned_cols=155 Identities=25% Similarity=0.365 Sum_probs=106.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
||+++|+++||||||+++|.+..+.. ...+....+..... .......+.+||++|. ..+..+.. ..+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~--~~~~~~~~-------~~~~ 70 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE-NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQ--ERFDSLRD-------IFYR 70 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS-SSETTSSEEEEEEEEEETTEEEEEEEEEETTS--GGGHHHHH-------HHHT
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc-cccccccccccccccccccccccccccccccc--cccccccc-------cccc
Confidence 69999999999999999999887652 22222113333333 3345567999999994 44443332 3378
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
++|++|+|+|.++.. .....|+.........+.|++||+||.|+...+.+. +....+....+ .+++++||+++.||
T Consensus 71 ~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v 149 (162)
T PF00071_consen 71 NSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSAKNGENV 149 (162)
T ss_dssp TESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBTTTTTTH
T ss_pred ccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEECCCCCCH
Confidence 999999999998643 444555444433332368999999999997643321 12233333344 69999999999999
Q ss_pred HHHHHHHHhhC
Q 017937 272 EDIRDWILTKL 282 (363)
Q Consensus 272 ~eL~~~i~~~l 282 (363)
.++|..+++.+
T Consensus 150 ~~~f~~~i~~i 160 (162)
T PF00071_consen 150 KEIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 169
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.82 E-value=3.2e-19 Score=182.24 Aligned_cols=163 Identities=25% Similarity=0.313 Sum_probs=120.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh----hhHHHHHHHHH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKNV 189 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~----~~~~~~~~~~~ 189 (363)
+..+|+++|.||||||||+|+|+|.+. .+.+.+++|.+...+.+...+.++.+|||||+.+... ....+......
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 345899999999999999999999876 4788999999998888888889999999999754221 12222221111
Q ss_pred HhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
.....+|++++|+|+++..... .++ ..+.. .++|+++|+||+|+.+.+......+.+.+..+. +++++||++|+
T Consensus 81 -l~~~~aD~vI~VvDat~ler~l-~l~-~ql~e--~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~-pVvpiSA~~g~ 154 (772)
T PRK09554 81 -ILSGDADLLINVVDASNLERNL-YLT-LQLLE--LGIPCIVALNMLDIAEKQNIRIDIDALSARLGC-PVIPLVSTRGR 154 (772)
T ss_pred -HhccCCCEEEEEecCCcchhhH-HHH-HHHHH--cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCC-CEEEEEeecCC
Confidence 1135899999999998754433 223 33333 579999999999997554443334444444444 89999999999
Q ss_pred CHHHHHHHHHhhCC
Q 017937 270 GVEDIRDWILTKLP 283 (363)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (363)
|++++++.+.+...
T Consensus 155 GIdeL~~~I~~~~~ 168 (772)
T PRK09554 155 GIEALKLAIDRHQA 168 (772)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999988764
No 170
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.82 E-value=3.4e-19 Score=156.36 Aligned_cols=157 Identities=23% Similarity=0.193 Sum_probs=105.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceec------------------------------CCCCceEEEEEEEEeCCCeeEE
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT------------------------------NKPQTTRHRILGICSGPEYQMI 166 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~~i~ 166 (363)
+|+++|++|+|||||+++|++....+.+ ...++|++.....+...+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999865433221 1256777777777778889999
Q ss_pred EEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh--HH
Q 017937 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EI 244 (363)
Q Consensus 167 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~ 244 (363)
+|||||+. .+ ...+..++..+|++|+|+|++.+..........++... ...++|+|+||+|+.... ..
T Consensus 81 liDTpG~~--~~-------~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~-~~~~iIvviNK~D~~~~~~~~~ 150 (208)
T cd04166 81 IADTPGHE--QY-------TRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLL-GIRHVVVAVNKMDLVDYSEEVF 150 (208)
T ss_pred EEECCcHH--HH-------HHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHc-CCCcEEEEEEchhcccCCHHHH
Confidence 99999952 21 22334457899999999999987655444444443331 224578899999997421 11
Q ss_pred HHH---HHHHHhcCC--CCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCC
Q 017937 245 AKK---LEWYEKFTD--VDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYP 290 (363)
Q Consensus 245 ~~~---~~~~~~~~~--~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~ 290 (363)
... ...+....+ ..+++++||++|.|+.+. ....+|++.
T Consensus 151 ~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~-------~~~~~w~~g 194 (208)
T cd04166 151 EEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR-------SENMPWYSG 194 (208)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC-------CCCCCCCCC
Confidence 111 122222222 246899999999999853 345677765
No 171
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.82 E-value=1.9e-18 Score=171.49 Aligned_cols=156 Identities=23% Similarity=0.261 Sum_probs=104.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCC-ceEEEEEEEEe------------------CCCeeEEEEeCCCC
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICS------------------GPEYQMILYDTPGI 173 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~-~t~~~~~~~~~------------------~~~~~i~l~DtpG~ 173 (363)
.|+|.|+++|++|+|||||+|+|.+..+. ...++ +|++.....+. ....++.+|||||+
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~--~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~ 79 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVA--KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH 79 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccc--cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc
Confidence 47889999999999999999999998764 23333 34321111110 01124899999994
Q ss_pred chhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhH----------
Q 017937 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---------- 243 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---------- 243 (363)
..+..+ ...++..+|++++|+|++++...........++. .+.|+++|+||+|+.....
T Consensus 80 --e~f~~l-------~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~ 148 (590)
T TIGR00491 80 --EAFTNL-------RKRGGALADLAILIVDINEGFKPQTQEALNILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMES 148 (590)
T ss_pred --HhHHHH-------HHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHH--cCCCEEEEEECCCccchhhhccCchHHHH
Confidence 444433 2334689999999999998765555555555554 5789999999999964210
Q ss_pred ----HHHH-----------HHHHH-------------hcCCCCcEEEcccCCCCCHHHHHHHHHhh
Q 017937 244 ----IAKK-----------LEWYE-------------KFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (363)
Q Consensus 244 ----~~~~-----------~~~~~-------------~~~~~~~i~~vSAk~g~gi~eL~~~i~~~ 281 (363)
.... ...+. .+.+..+++++||++|+|+++|+.+|...
T Consensus 149 sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 149 FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 0000 00111 12345689999999999999999998754
No 172
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.81 E-value=1.1e-18 Score=151.10 Aligned_cols=145 Identities=19% Similarity=0.185 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccc---------------eecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~ 180 (363)
.+|+++|++++|||||+++|++.... ......+.|.+.....+..++.++.++||||+..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH-----
Confidence 47999999999999999999864110 0112456677766666777788999999999621
Q ss_pred HHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCC-EEEEEcCCCCCChhHHHH-----HHHHHHhc
Q 017937 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-----KLEWYEKF 254 (363)
Q Consensus 181 ~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~-----~~~~~~~~ 254 (363)
+...+...+..+|++++|+|+..+.......+...+.. .++| +|+|+||+|+....+..+ ....+...
T Consensus 78 ----~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~ 151 (195)
T cd01884 78 ----YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQ--VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKY 151 (195)
T ss_pred ----HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 34455666889999999999998877776666666655 5666 789999999974333221 22222221
Q ss_pred C---CCCcEEEcccCCCCCH
Q 017937 255 T---DVDEVIPVSAKYGHGV 271 (363)
Q Consensus 255 ~---~~~~i~~vSAk~g~gi 271 (363)
. ...+++++||++|.|+
T Consensus 152 g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 152 GFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred cccccCCeEEEeeCccccCC
Confidence 1 2368999999999985
No 173
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.81 E-value=6.8e-19 Score=156.82 Aligned_cols=156 Identities=30% Similarity=0.388 Sum_probs=112.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
+|+++|.+|+|||||+|+|.+.... +...+++|.....+.+...+..+.+|||||+....... ..+...+...++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~--~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-VAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG--KGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCccccceEEEEEECCeEEEEEECCCcccccccc--hhHHHHHHHhhccC
Confidence 7999999999999999999997643 56788888887777777788999999999974422111 11223345668999
Q ss_pred ceEEEEeeCCCCCchHHHHHHHhc--------------------------------------------------------
Q 017937 197 DCIVVLVDACKAPERIDEILEEGV-------------------------------------------------------- 220 (363)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~~~~~~-------------------------------------------------------- 220 (363)
|++++|+|+++...... .+.+.+
T Consensus 79 d~il~V~D~t~~~~~~~-~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~ 157 (233)
T cd01896 79 DLILMVLDATKPEGHRE-ILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLI 157 (233)
T ss_pred CEEEEEecCCcchhHHH-HHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEE
Confidence 99999999976542111 111111
Q ss_pred -------------cccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 221 -------------GDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 221 -------------~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
.......|+++|+||+|+.+..+... +.. ..+++++||++|.|++++++.|.+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~----~~~---~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 158 REDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL----LAR---QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred ccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH----Hhc---CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 01113369999999999987665442 222 235899999999999999999998763
No 174
>COG2262 HflX GTPases [General function prediction only]
Probab=99.81 E-value=6.6e-19 Score=162.27 Aligned_cols=165 Identities=29% Similarity=0.319 Sum_probs=122.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
-+.|+++|++|+|||||+|+|++.... +.+....|.++....+... +..+.+-||-|+++.-++.+-..|. .+....
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFk-sTLEE~ 269 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFK-STLEEV 269 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCee-ccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHH-HHHHHh
Confidence 458999999999999999999987754 5677777777666555544 6889999999998877777766664 344557
Q ss_pred cccceEEEEeeCCCCC-chHHHHHHHhccccC-CCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 194 INADCIVVLVDACKAP-ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~-~~~~~~~~~~~~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
..||++++|+|++++. ..........+.... ..+|+|+|+||+|+....... ..+....+ ..+.+||++|.|+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~---~~~~~~~~--~~v~iSA~~~~gl 344 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEIL---AELERGSP--NPVFISAKTGEGL 344 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhh---hhhhhcCC--CeEEEEeccCcCH
Confidence 8999999999999885 222222333333321 568999999999988655421 22222222 5799999999999
Q ss_pred HHHHHHHHhhCCCCC
Q 017937 272 EDIRDWILTKLPLGP 286 (363)
Q Consensus 272 ~eL~~~i~~~l~~~~ 286 (363)
+.|++.|.+.+....
T Consensus 345 ~~L~~~i~~~l~~~~ 359 (411)
T COG2262 345 DLLRERIIELLSGLR 359 (411)
T ss_pred HHHHHHHHHHhhhcc
Confidence 999999999987543
No 175
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.7e-19 Score=150.03 Aligned_cols=160 Identities=18% Similarity=0.187 Sum_probs=117.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceec-CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
.-.+|+++|+++||||-|+.++..++|..-+ .+.|.........++.+..+..+|||+| +++++.+ ...|
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAG--QERyrAi-------tSaY 83 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAG--QERYRAI-------TSAY 83 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccc--hhhhccc-------cchh
Confidence 3448999999999999999999999987532 2334444444455666778899999999 6666544 3455
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHH-HHHHHhcCCCCcEEEcccCCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
++.|.++++|+|++... +....|+.++......++++++|+||+||...+.+... ...+.... ...++++||..+.
T Consensus 84 YrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~-~l~f~EtSAl~~t 162 (222)
T KOG0087|consen 84 YRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKE-GLFFLETSALDAT 162 (222)
T ss_pred hcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhc-CceEEEecccccc
Confidence 89999999999998654 66677777776665678999999999999764433222 12222222 2368999999999
Q ss_pred CHHHHHHHHHhhCC
Q 017937 270 GVEDIRDWILTKLP 283 (363)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (363)
|+++.|..++..+.
T Consensus 163 NVe~aF~~~l~~I~ 176 (222)
T KOG0087|consen 163 NVEKAFERVLTEIY 176 (222)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999988776553
No 176
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.80 E-value=9.6e-19 Score=174.77 Aligned_cols=198 Identities=25% Similarity=0.279 Sum_probs=126.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccce--------ec------CCCCceEEEEEEEE-----eCCCeeEEEEeCCCCchh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSI--------VT------NKPQTTRHRILGIC-----SGPEYQMILYDTPGIIEK 176 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~--------~~------~~~~~t~~~~~~~~-----~~~~~~i~l~DtpG~~~~ 176 (363)
.+|+++|++++|||||+++|+...... +. ...+.|.......+ +...+.+++|||||+.+
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d- 82 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD- 82 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH-
Confidence 389999999999999999998753211 11 11244444322222 23347899999999633
Q ss_pred hhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCC
Q 017937 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (363)
+ ...+..++..||++|+|+|++++.+............ .+.|+++|+||+|+..... ......+....+
T Consensus 83 -F-------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--~~ipiIiViNKiDl~~~~~-~~~~~el~~~lg 151 (595)
T TIGR01393 83 -F-------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--NDLEIIPVINKIDLPSADP-ERVKKEIEEVIG 151 (595)
T ss_pred -H-------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCCccCH-HHHHHHHHHHhC
Confidence 2 2234456889999999999998764443322222222 5689999999999964321 112222222222
Q ss_pred C--CcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhh-ccCCCCCceEEEEEEEEec
Q 017937 257 V--DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQ-YRNEVPYACQVNVVSYKTR 333 (363)
Q Consensus 257 ~--~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~-~~~evp~s~~i~~~~~~~~ 333 (363)
. ..++++||++|.|+++|+++|.+.++..... .+.|.+..+ +.. ..+.+|..+.+.+..+...
T Consensus 152 ~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~------~~~pl~~~V--------~~~~~d~~~G~v~~~rV~sG~lk 217 (595)
T TIGR01393 152 LDASEAILASAKTGIGIEEILEAIVKRVPPPKGD------PDAPLKALI--------FDSHYDNYRGVVALVRVFEGTIK 217 (595)
T ss_pred CCcceEEEeeccCCCCHHHHHHHHHHhCCCCCCC------CCCCeEEEE--------EEEEEeCCCcEEEEEEEECCEEe
Confidence 2 2589999999999999999999998753221 122222211 111 3467888888999999888
Q ss_pred CCCeeE
Q 017937 334 PTAKDF 339 (363)
Q Consensus 334 ~~~~~~ 339 (363)
.+..+.
T Consensus 218 ~Gd~v~ 223 (595)
T TIGR01393 218 PGDKIR 223 (595)
T ss_pred cCCEEE
Confidence 765443
No 177
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.2e-18 Score=169.88 Aligned_cols=165 Identities=27% Similarity=0.318 Sum_probs=127.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
..+|+++|.||||||||+|+|+|.+.. +.++||.|.+...+.+...+.++.++|.||...-...+.++...+.... -.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~-VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll-~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQK-VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL-EG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCce-ecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh-cC
Confidence 347999999999999999999998865 8999999999999999999999999999998765444444444333322 24
Q ss_pred ccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHH
Q 017937 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL 274 (363)
.+|+++-|+|+++-..+.. ...++++ .+.|+++++|++|.....-+.-..+.+.+..+. |++++||++|.|++++
T Consensus 81 ~~D~ivnVvDAtnLeRnLy-ltlQLlE---~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv-PVv~tvA~~g~G~~~l 155 (653)
T COG0370 81 KPDLIVNVVDATNLERNLY-LTLQLLE---LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV-PVVPTVAKRGEGLEEL 155 (653)
T ss_pred CCCEEEEEcccchHHHHHH-HHHHHHH---cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC-CEEEEEeecCCCHHHH
Confidence 6799999999987544332 2333332 579999999999987655443334555555554 9999999999999999
Q ss_pred HHHHHhhCCCCC
Q 017937 275 RDWILTKLPLGP 286 (363)
Q Consensus 275 ~~~i~~~l~~~~ 286 (363)
++.+.+..+...
T Consensus 156 ~~~i~~~~~~~~ 167 (653)
T COG0370 156 KRAIIELAESKT 167 (653)
T ss_pred HHHHHHhccccc
Confidence 999998877654
No 178
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=1.3e-18 Score=165.19 Aligned_cols=158 Identities=20% Similarity=0.219 Sum_probs=125.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeC---CCeeEEEEeCCCCchhhhhhHHHHHHHHH
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 189 (363)
.|+|.|+++|+...|||||+.++.+.+.. ....-+.|.+.....+.. +...++|+|||| +..|..|+..+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va-~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPG--HeAFt~mRaRG---- 75 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPG--HEAFTAMRARG---- 75 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccc-cccCCceeeEeeeEEEEeccCCCceEEEEcCCc--HHHHHHHHhcC----
Confidence 37889999999999999999999998876 356667888876666654 457899999999 67888777665
Q ss_pred HhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHH------HhcCCCCcEEEc
Q 017937 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWY------EKFTDVDEVIPV 263 (363)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~------~~~~~~~~i~~v 263 (363)
..-+|++++|+|+.++..++...-...++. .+.|+++++||+|+.+.+......+.. ..+.+...++++
T Consensus 76 ---a~vtDIaILVVa~dDGv~pQTiEAI~hak~--a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~Vpv 150 (509)
T COG0532 76 ---ASVTDIAILVVAADDGVMPQTIEAINHAKA--AGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPV 150 (509)
T ss_pred ---CccccEEEEEEEccCCcchhHHHHHHHHHH--CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEe
Confidence 678999999999999998888777777777 799999999999998543322111111 123455689999
Q ss_pred ccCCCCCHHHHHHHHHhhC
Q 017937 264 SAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 264 SAk~g~gi~eL~~~i~~~l 282 (363)
||++|+|+++|++.|.-..
T Consensus 151 SA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 151 SAKTGEGIDELLELILLLA 169 (509)
T ss_pred eccCCCCHHHHHHHHHHHH
Confidence 9999999999999987544
No 179
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.79 E-value=2.8e-18 Score=171.35 Aligned_cols=157 Identities=21% Similarity=0.289 Sum_probs=114.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccccc--eecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
.|+++|++|+|||||+++|++.... .....++.|.+.....+...+..+.+|||||+ .. +...+...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh--e~-------f~~~~~~g~~ 72 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH--EK-------FISNAIAGGG 72 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH--HH-------HHHHHHhhhc
Confidence 6899999999999999999975421 12335567777666666666789999999994 22 3445566688
Q ss_pred ccceEEEEeeCCCCCchHHHHHHHhccccCCCCC-EEEEEcCCCCCChhHHHHHH----HHHHhcC--CCCcEEEcccCC
Q 017937 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKL----EWYEKFT--DVDEVIPVSAKY 267 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~~~----~~~~~~~--~~~~i~~vSAk~ 267 (363)
++|++++|+|++++...........+.. .++| +++|+||+|+.+...+.... ..+.... ...+++++||++
T Consensus 73 ~aD~aILVVDa~~G~~~qT~ehl~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~t 150 (581)
T TIGR00475 73 GIDAALLVVDADEGVMTQTGEHLAVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKT 150 (581)
T ss_pred cCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCC
Confidence 9999999999998765555544445544 5677 99999999998765433222 2222221 146899999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 017937 268 GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (363)
|.|+++++++|.+.+..
T Consensus 151 G~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 151 GQGIGELKKELKNLLES 167 (581)
T ss_pred CCCchhHHHHHHHHHHh
Confidence 99999999999877654
No 180
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.2e-18 Score=137.16 Aligned_cols=156 Identities=14% Similarity=0.201 Sum_probs=108.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccccee-cCCCCceEEEEEEEE-eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
++.++|...+|||||+-++.+..|... ..+.|... ....++ ..+..++.+|||+| ++.+..+ ...+++
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidF-KvKTvyr~~kRiklQiwDTag--qEryrti-------TTayyR 92 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDF-KVKTVYRSDKRIKLQIWDTAG--QERYRTI-------TTAYYR 92 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccceeeeeeeeE-EEeEeeecccEEEEEEEeccc--chhhhHH-------HHHHhh
Confidence 899999999999999999999887531 01111111 111222 23457899999999 4444333 445589
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
.++++|+++|+++.. .....|+.......-.+.|+|+|+||||+.+++.+. +....+....++ .+|++|||.+.||
T Consensus 93 gamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf-efFEtSaK~NinV 171 (193)
T KOG0093|consen 93 GAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF-EFFETSAKENINV 171 (193)
T ss_pred ccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh-HHhhhcccccccH
Confidence 999999999998753 444555544332223689999999999998765442 223344445565 8999999999999
Q ss_pred HHHHHHHHhhCC
Q 017937 272 EDIRDWILTKLP 283 (363)
Q Consensus 272 ~eL~~~i~~~l~ 283 (363)
+++|+.++..+-
T Consensus 172 k~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 172 KQVFERLVDIIC 183 (193)
T ss_pred HHHHHHHHHHHH
Confidence 999999887664
No 181
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.79 E-value=7.2e-19 Score=170.59 Aligned_cols=150 Identities=21% Similarity=0.178 Sum_probs=103.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccccee------------------------------cCCCCceEEEEEEEEeCCCe
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV------------------------------TNKPQTTRHRILGICSGPEY 163 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~ 163 (363)
...+|+++|++|+|||||+++|++....+. ...+++|++.....+..++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 345899999999999999999985432211 12578899888888888899
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCC--CCchHHHHHHHhccccCCCCCEEEEEcCCCCCCh
Q 017937 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK--APERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (363)
Q Consensus 164 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~--~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 241 (363)
.+.+|||||+. .+ ...+...+..+|++++|+|+++ +......+...++... ...|+++|+||+|+...
T Consensus 85 ~i~liDtpG~~--~~-------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~ 154 (425)
T PRK12317 85 YFTIVDCPGHR--DF-------VKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNY 154 (425)
T ss_pred EEEEEECCCcc--cc-------hhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccc
Confidence 99999999952 21 1223344678999999999987 5544444444444432 22469999999999752
Q ss_pred --hHHH----HHHHHHHhcC---CCCcEEEcccCCCCCHHH
Q 017937 242 --GEIA----KKLEWYEKFT---DVDEVIPVSAKYGHGVED 273 (363)
Q Consensus 242 --~~~~----~~~~~~~~~~---~~~~i~~vSAk~g~gi~e 273 (363)
.... +....+.... ...+++++||++|.|+++
T Consensus 155 ~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 155 DEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 1111 2222222211 125799999999999987
No 182
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.79 E-value=8.4e-18 Score=141.54 Aligned_cols=160 Identities=28% Similarity=0.366 Sum_probs=105.0
Q ss_pred EEEEcCCCCChHHHHHHHhccc-cceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh-hhHHHHH---HHHHHhh
Q 017937 118 VAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSMM---MKNVRSA 192 (363)
Q Consensus 118 i~i~G~~~~GKSSLln~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~-~~~~~~~---~~~~~~~ 192 (363)
|+++|.+|+|||||+|+|.+.. ....+..++.|........ . ..+.+|||||+..... ......+ ...+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc--c-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999543 3334555666654433222 2 3899999999743210 0011111 1222222
Q ss_pred ccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHH----HHhcCCCCcEEEcccCCC
Q 017937 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW----YEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~----~~~~~~~~~i~~vSAk~g 268 (363)
...++++++++|...........+..++.. .+.|+++|+||+|+............ +.......+++++||+++
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~--~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~ 156 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEE--LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKG 156 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHH--cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCC
Confidence 345788999999987655555555555555 46899999999999765543332222 221234458999999999
Q ss_pred CCHHHHHHHHHhhC
Q 017937 269 HGVEDIRDWILTKL 282 (363)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (363)
.|+.+++++|.+.+
T Consensus 157 ~~~~~l~~~l~~~~ 170 (170)
T cd01876 157 QGIDELRALIEKWL 170 (170)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999998753
No 183
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.79 E-value=1.3e-18 Score=173.88 Aligned_cols=154 Identities=28% Similarity=0.329 Sum_probs=110.5
Q ss_pred cCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEE
Q 017937 122 GKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVV 201 (363)
Q Consensus 122 G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 201 (363)
|.+|||||||+|+|.+.+. .+++.+++|.+.....+..++.++.+|||||+.........+...+.. .....+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~-l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDY-LLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHH-HhhcCCCEEEE
Confidence 8999999999999999876 478899999988887777778889999999964322211222222211 11357999999
Q ss_pred EeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhh
Q 017937 202 LVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (363)
Q Consensus 202 VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~ 281 (363)
|+|+++.... .....+.. . .+.|+++|+||+|+.+...+....+.+.+..+ .+++++||++|.|++++++++.+.
T Consensus 79 VvDat~ler~-l~l~~ql~-~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg-~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 79 VVDASNLERN-LYLTLQLL-E--LGIPMILALNLVDEAEKKGIRIDEEKLEERLG-VPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred EecCCcchhh-HHHHHHHH-h--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHH
Confidence 9999874332 22233322 2 57999999999999654433323344444444 489999999999999999999876
Q ss_pred C
Q 017937 282 L 282 (363)
Q Consensus 282 l 282 (363)
.
T Consensus 154 ~ 154 (591)
T TIGR00437 154 I 154 (591)
T ss_pred h
Confidence 5
No 184
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.79 E-value=9.3e-19 Score=137.95 Aligned_cols=154 Identities=20% Similarity=0.255 Sum_probs=110.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCce-EEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t-~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+.+|+|++|||||||+.++....|+ ..+..|+ .+..... +.+..+++.+|||+| ++.+..+ ...++
T Consensus 10 kllIigDsgVGKssLl~rF~ddtFs--~sYitTiGvDfkirTv~i~G~~VkLqIwDtAG--qErFrti-------tstyy 78 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTFS--GSYITTIGVDFKIRTVDINGDRVKLQIWDTAG--QERFRTI-------TSTYY 78 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhcccc--cceEEEeeeeEEEEEeecCCcEEEEEEeeccc--HHHHHHH-------HHHHc
Confidence 6789999999999999999988775 2222222 2333333 345668899999999 6665544 44558
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHH-HHHHHHhcCCCCcEEEcccCCCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSAk~g~g 270 (363)
+..+++++|+|.+++. .....|+.+... .....|-++|+||.|....+.+.. ....+....+ ..+|++|||.++|
T Consensus 79 rgthgv~vVYDVTn~ESF~Nv~rWLeei~~-ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mg-ie~FETSaKe~~N 156 (198)
T KOG0079|consen 79 RGTHGVIVVYDVTNGESFNNVKRWLEEIRN-NCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMG-IELFETSAKENEN 156 (198)
T ss_pred cCCceEEEEEECcchhhhHhHHHHHHHHHh-cCccccceecccCCCCccceeeehHHHHHHHHhcC-chheehhhhhccc
Confidence 9999999999999765 455566655543 346789999999999986554322 1222333333 4789999999999
Q ss_pred HHHHHHHHHhhCC
Q 017937 271 VEDIRDWILTKLP 283 (363)
Q Consensus 271 i~eL~~~i~~~l~ 283 (363)
++..|..|.+++.
T Consensus 157 vE~mF~cit~qvl 169 (198)
T KOG0079|consen 157 VEAMFHCITKQVL 169 (198)
T ss_pred chHHHHHHHHHHH
Confidence 9999999987764
No 185
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.79 E-value=4.2e-18 Score=170.36 Aligned_cols=199 Identities=24% Similarity=0.265 Sum_probs=127.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccce--------e------cCCCCceEEEEEEEE-----eCCCeeEEEEeCCCCch
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--------V------TNKPQTTRHRILGIC-----SGPEYQMILYDTPGIIE 175 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~--------~------~~~~~~t~~~~~~~~-----~~~~~~i~l~DtpG~~~ 175 (363)
..+|+++|+.++|||||+.+|+...... + ....+.|.......+ +..++.+++|||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 3489999999999999999998642111 0 011233333211112 23468899999999643
Q ss_pred hhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcC
Q 017937 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT 255 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~ 255 (363)
+ ...+..++..||++|+|+|++++.+.........+.. .+.|+++|+||+|+..... ......+....
T Consensus 87 --F-------~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--~~lpiIvViNKiDl~~a~~-~~v~~ei~~~l 154 (600)
T PRK05433 87 --F-------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--NDLEIIPVLNKIDLPAADP-ERVKQEIEDVI 154 (600)
T ss_pred --H-------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCCCcccH-HHHHHHHHHHh
Confidence 2 2234556789999999999998775544333333323 5789999999999964321 11222222222
Q ss_pred CC--CcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHh-hccCCCCCceEEEEEEEEe
Q 017937 256 DV--DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKT 332 (363)
Q Consensus 256 ~~--~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~-~~~~evp~s~~i~~~~~~~ 332 (363)
+. ..++++||++|.|+++|+++|.+.++..... .+.|.+.. ++. .+.+..|..+.+.+..+..
T Consensus 155 g~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~------~~~pl~~~--------Vfd~~~d~~~G~v~~~rV~sG~L 220 (600)
T PRK05433 155 GIDASDAVLVSAKTGIGIEEVLEAIVERIPPPKGD------PDAPLKAL--------IFDSWYDNYRGVVVLVRVVDGTL 220 (600)
T ss_pred CCCcceEEEEecCCCCCHHHHHHHHHHhCccccCC------CCCCceEE--------EEEEEecCCCceEEEEEEEcCEE
Confidence 22 2589999999999999999999998753221 12232221 122 2356788889999999998
Q ss_pred cCCCeeE
Q 017937 333 RPTAKDF 339 (363)
Q Consensus 333 ~~~~~~~ 339 (363)
..+..+.
T Consensus 221 k~Gd~i~ 227 (600)
T PRK05433 221 KKGDKIK 227 (600)
T ss_pred ecCCEEE
Confidence 8765443
No 186
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=3.8e-18 Score=165.19 Aligned_cols=215 Identities=22% Similarity=0.266 Sum_probs=147.6
Q ss_pred CCCCCCcEEEEEcCCCCChHHHHHHHhccccce-----ecCCCCceEEEEEEE------------EeCCCeeEEEEeCCC
Q 017937 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSI-----VTNKPQTTRHRILGI------------CSGPEYQMILYDTPG 172 (363)
Q Consensus 110 ~~~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~-----~~~~~~~t~~~~~~~------------~~~~~~~i~l~DtpG 172 (363)
....|+|.|||+|+..+|||-|+..+.+.++.. .++..|.|......+ ....-..+.+|||||
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg 549 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG 549 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence 346799999999999999999999999877642 222223332222111 012234689999999
Q ss_pred CchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh------HH--
Q 017937 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG------EI-- 244 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~------~~-- 244 (363)
+++|.+++.++ ...||++|+|+|+.++.+.+......+++. .+.|+||++||+|.+-.+ .+
T Consensus 550 --hEsFtnlRsrg-------sslC~~aIlvvdImhGlepqtiESi~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~~ 618 (1064)
T KOG1144|consen 550 --HESFTNLRSRG-------SSLCDLAILVVDIMHGLEPQTIESINLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIVE 618 (1064)
T ss_pred --chhhhhhhhcc-------ccccceEEEEeehhccCCcchhHHHHHHHh--cCCCeEEeehhhhhhcccccCCCchHHH
Confidence 67777776665 678999999999999998888888888888 899999999999985211 11
Q ss_pred ----------HHH-------HHHHHh-------------cCCCCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCC
Q 017937 245 ----------AKK-------LEWYEK-------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIV 294 (363)
Q Consensus 245 ----------~~~-------~~~~~~-------------~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~ 294 (363)
.++ +-.+.. ...+..++|+||.+|+||.+|+-+|+++.+.
T Consensus 619 ~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk---------- 688 (1064)
T KOG1144|consen 619 ALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK---------- 688 (1064)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH----------
Confidence 111 111111 1234578999999999999999999987652
Q ss_pred CCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCCeeEEEEEEE--EeeCCceeEEecCCCCC
Q 017937 295 SEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIV--VEKNSQKIILIGKVSPF 362 (363)
Q Consensus 295 ~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~~~~~~~i~~~i~--~~~~~q~~ivig~~G~~ 362 (363)
.++ +++. +..+ +...++..+..++-...|++.+. .-+.|...+|+|-+|..
T Consensus 689 ------~m~-----~kl~--y~~e----v~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpI 741 (1064)
T KOG1144|consen 689 ------TMV-----EKLA--YVDE----VQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPI 741 (1064)
T ss_pred ------HHH-----HHHh--hhhh----eeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCch
Confidence 111 1111 1222 25567778888775555654432 24788889999999964
No 187
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2.5e-18 Score=135.69 Aligned_cols=157 Identities=20% Similarity=0.220 Sum_probs=112.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccce-ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
.+|+++|..|||||.|+.++...-|+. .+.+.+.........+.++..++.+|||+| ++++.++ ..++++
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtag--qerfrsi-------tqsyyr 78 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAG--QERFRSI-------TQSYYR 78 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccc--hHHHHHH-------HHHHhh
Confidence 389999999999999999998876642 122222233333444566778999999999 6776655 445588
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHH-HHHHhcCCCCcEEEcccCCCCCH
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
.|+++|+|+|++-.+ .-+.+|+.+.-.....++-.|+|+||+|+.+.+++.+.+ +.+... ...-++++||+...|+
T Consensus 79 sahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~-qdmyfletsakea~nv 157 (213)
T KOG0095|consen 79 SAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEA-QDMYFLETSAKEADNV 157 (213)
T ss_pred hcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHh-hhhhhhhhcccchhhH
Confidence 999999999998433 555667666554444566779999999998876665443 333332 2335789999999999
Q ss_pred HHHHHHHHhhC
Q 017937 272 EDIRDWILTKL 282 (363)
Q Consensus 272 ~eL~~~i~~~l 282 (363)
+.||..+.-.+
T Consensus 158 e~lf~~~a~rl 168 (213)
T KOG0095|consen 158 EKLFLDLACRL 168 (213)
T ss_pred HHHHHHHHHHH
Confidence 99998877655
No 188
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.78 E-value=3.7e-18 Score=135.59 Aligned_cols=116 Identities=38% Similarity=0.522 Sum_probs=89.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
+|+++|.+|+|||||+|+|++.+...++..+++|+......+...+..+.++||||+...............+...+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 58999999999999999999987777889999999887777777888999999999865433222112334455556899
Q ss_pred ceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcC
Q 017937 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (363)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK 235 (363)
|+++||+|+.+........+.+.++ .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~~~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPITEDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHh---cCCCEEEEEcC
Confidence 9999999987744444455555553 67999999998
No 189
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.78 E-value=7.6e-18 Score=168.77 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=112.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccccc--eecCCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~--~~~~~~~~t~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.|+++|++++|||||+++|.|.+.. ......+.|.+.....+.. ++..+.+|||||+ .. +...+...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh--e~-------fi~~m~~g~ 72 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH--EK-------FLSNMLAGV 72 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH--HH-------HHHHHHHHh
Confidence 5899999999999999999975422 1233457776655444433 4567899999995 22 334555668
Q ss_pred cccceEEEEeeCCCCCchHHHHHHHhccccCCCCC-EEEEEcCCCCCChhHHHHHHHHHH----hcC-CCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKLEWYE----KFT-DVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~~~~~~~----~~~-~~~~i~~vSAk~ 267 (363)
..+|++++|+|+.++...........+.. .+.| +++|+||+|+.+..........+. ... ...++|++||++
T Consensus 73 ~~~D~~lLVVda~eg~~~qT~ehl~il~~--lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~t 150 (614)
T PRK10512 73 GGIDHALLVVACDDGVMAQTREHLAILQL--TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATE 150 (614)
T ss_pred hcCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence 89999999999998877766666666554 4556 579999999987554433333222 211 235899999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 017937 268 GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (363)
|.|+++|+++|.+...+
T Consensus 151 G~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 151 GRGIDALREHLLQLPER 167 (614)
T ss_pred CCCCHHHHHHHHHhhcc
Confidence 99999999999876654
No 190
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.78 E-value=1.8e-18 Score=153.56 Aligned_cols=159 Identities=27% Similarity=0.319 Sum_probs=114.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCee-EEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQ-MILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
.|++||.||+|||||+|+|...+.. +..++.||..+..+.+.++++. +.+-|.||++..... ++-+--.+.+.+..
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpk-Va~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~--nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPK-VAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHM--NKGLGYKFLRHIER 274 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCc-ccccceeeeccccceeeccccceeEeccCccccccccc--cCcccHHHHHHHHh
Confidence 6899999999999999999998864 7899999999988888877665 999999999775431 12112233444688
Q ss_pred cceEEEEeeCCCCC-----chHHHHHHHhcccc---CCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCC
Q 017937 196 ADCIVVLVDACKAP-----ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 196 ad~ii~VvD~~~~~-----~~~~~~~~~~~~~~---~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
|+.++||+|.+.+. +... .+...+..+ -.+.|.++|+||+|+.+.+. ..+..+.+......++++||++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~-lL~~ELe~yek~L~~rp~liVaNKiD~~eae~--~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQ-LLIEELELYEKGLADRPALIVANKIDLPEAEK--NLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHH-HHHHHHHHHhhhhccCceEEEEeccCchhHHH--HHHHHHHHHcCCCcEEEeeecc
Confidence 99999999998761 2222 222222221 25789999999999963322 2233344434443699999999
Q ss_pred CCCHHHHHHHHHhh
Q 017937 268 GHGVEDIRDWILTK 281 (363)
Q Consensus 268 g~gi~eL~~~i~~~ 281 (363)
++|+.+|++.|...
T Consensus 352 ~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 352 GEGLEELLNGLREL 365 (366)
T ss_pred ccchHHHHHHHhhc
Confidence 99999999988654
No 191
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.78 E-value=9.7e-18 Score=149.62 Aligned_cols=157 Identities=20% Similarity=0.230 Sum_probs=110.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcccccee-----------------cCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-----------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~ 179 (363)
+|+++|++|+|||||+++|+.....+. ....+.|.......+.+.+.++.+|||||+.+ +
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~--f- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD--F- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc--h-
Confidence 489999999999999999986432110 01122334444555667889999999999633 1
Q ss_pred hHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh--H-HHHHHHHHH----
Q 017937 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--E-IAKKLEWYE---- 252 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~-~~~~~~~~~---- 252 (363)
...+..+++.+|++++|+|++++.......+...+.. .++|+++|+||+|+.... . +.+....+.
T Consensus 78 ------~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~--~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~ 149 (237)
T cd04168 78 ------IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRK--LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIV 149 (237)
T ss_pred ------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeE
Confidence 2334556789999999999998876666666666655 679999999999987421 1 111111110
Q ss_pred -------------------------------------------------------hcCCCCcEEEcccCCCCCHHHHHHH
Q 017937 253 -------------------------------------------------------KFTDVDEVIPVSAKYGHGVEDIRDW 277 (363)
Q Consensus 253 -------------------------------------------------------~~~~~~~i~~vSAk~g~gi~eL~~~ 277 (363)
......|+|..||.++.|+..|++.
T Consensus 150 ~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~ 229 (237)
T cd04168 150 PMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEG 229 (237)
T ss_pred EEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHH
Confidence 0123458899999999999999999
Q ss_pred HHhhCCC
Q 017937 278 ILTKLPL 284 (363)
Q Consensus 278 i~~~l~~ 284 (363)
|.+.+|.
T Consensus 230 ~~~~~p~ 236 (237)
T cd04168 230 ITKLFPT 236 (237)
T ss_pred HHHhcCC
Confidence 9999874
No 192
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=5.1e-18 Score=134.53 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=109.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccce-ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
.+++++|..|+|||.|+.+++.+++.. ++.+.+.....-...+..+..++.+|||+| ++.+..+ .+.|++
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAG--QErFRSV-------tRsYYR 80 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAG--QERFRSV-------TRSYYR 80 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeeccc--HHHHHHH-------HHHHhc
Confidence 489999999999999999999887752 222233322222223445567899999999 6666544 566799
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHH-HHHHhcCCCCcEEEcccCCCCCH
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
.|-+.++|+|+++.. ..+..|+.........++-+++++||.||.+.+++.-.. ..+.... ...+.++||++|+||
T Consensus 81 GAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEn-el~flETSa~TGeNV 159 (214)
T KOG0086|consen 81 GAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQEN-ELMFLETSALTGENV 159 (214)
T ss_pred cccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhccc-ceeeeeecccccccH
Confidence 999999999998654 566677766544444678899999999998777654322 2232222 236799999999999
Q ss_pred HHHHHHHHh
Q 017937 272 EDIRDWILT 280 (363)
Q Consensus 272 ~eL~~~i~~ 280 (363)
++.|-...+
T Consensus 160 EEaFl~c~~ 168 (214)
T KOG0086|consen 160 EEAFLKCAR 168 (214)
T ss_pred HHHHHHHHH
Confidence 998765444
No 193
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.77 E-value=1.7e-17 Score=146.74 Aligned_cols=153 Identities=19% Similarity=0.222 Sum_probs=104.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceec-------------CCCCceEE------------------------EEEEEEe
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-------------NKPQTTRH------------------------RILGICS 159 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~-------------~~~~~t~~------------------------~~~~~~~ 159 (363)
+|+++|+.++|||||+++|....+.... ...|.|.. .....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999864432100 00111110 0012233
Q ss_pred CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc--cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCC
Q 017937 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (363)
Q Consensus 160 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~--~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~D 237 (363)
..+..+.++||||+. .+ .+.+...+ ..+|++++|+|+..+....+..+..++.. .++|+++|+||+|
T Consensus 81 ~~~~~i~liDtpG~~--~~-------~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~--~~ip~ivvvNK~D 149 (224)
T cd04165 81 KSSKLVTFIDLAGHE--RY-------LKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALA--LNIPVFVVVTKID 149 (224)
T ss_pred eCCcEEEEEECCCcH--HH-------HHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEECcc
Confidence 446789999999963 22 12223333 36899999999998888777777777766 6789999999999
Q ss_pred CCChhHHHHHHHHHHhc----------------------------CCCCcEEEcccCCCCCHHHHHHHHHh
Q 017937 238 LIKPGEIAKKLEWYEKF----------------------------TDVDEVIPVSAKYGHGVEDIRDWILT 280 (363)
Q Consensus 238 l~~~~~~~~~~~~~~~~----------------------------~~~~~i~~vSAk~g~gi~eL~~~i~~ 280 (363)
+.+..........+... ....|+|.+||.+|+|+++|...|..
T Consensus 150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 98765554444333221 12348999999999999999988754
No 194
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.9e-17 Score=156.28 Aligned_cols=197 Identities=25% Similarity=0.260 Sum_probs=138.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce--------------ecCCCCceEEEEEEEEe---CCCeeEEEEeCCCCchh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--------------VTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEK 176 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~--------------~~~~~~~t~~~~~~~~~---~~~~~i~l~DtpG~~~~ 176 (363)
+-.+++|+.+...|||||..+|+.....+ +....|.|......... +..+.++++|||||.+.
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 33489999999999999999987433211 23344555554443333 34488999999998775
Q ss_pred hhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCCh--hHHHHHHHHHHhc
Q 017937 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYEKF 254 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~--~~~~~~~~~~~~~ 254 (363)
... +.+.+..||++|+|+|+..+.+.+........-. .+..+|.|+||+|+... +.+......+-..
T Consensus 139 s~E---------VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe--~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~ 207 (650)
T KOG0462|consen 139 SGE---------VSRSLAACDGALLVVDASQGVQAQTVANFYLAFE--AGLAIIPVLNKIDLPSADPERVENQLFELFDI 207 (650)
T ss_pred cce---------ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH--cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcC
Confidence 533 3344778999999999999987766543333323 67889999999999854 3343333333332
Q ss_pred CCCCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecC
Q 017937 255 TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRP 334 (363)
Q Consensus 255 ~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~~ 334 (363)
. ..+++.+|||+|.|+++++++|++.+|+... ..+.|-|.++-+ ..+....|....+++..+..+.
T Consensus 208 ~-~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~------~~d~plr~Lifd-------s~yD~y~G~I~~vrv~~G~vrk 273 (650)
T KOG0462|consen 208 P-PAEVIYVSAKTGLNVEELLEAIIRRVPPPKG------IRDAPLRMLIFD-------SEYDEYRGVIALVRVVDGVVRK 273 (650)
T ss_pred C-ccceEEEEeccCccHHHHHHHHHhhCCCCCC------CCCcchHHHhhh-------hhhhhhcceEEEEEEeeeeeec
Confidence 2 2478999999999999999999999986443 356677765543 3356667788889999988875
Q ss_pred C
Q 017937 335 T 335 (363)
Q Consensus 335 ~ 335 (363)
+
T Consensus 274 G 274 (650)
T KOG0462|consen 274 G 274 (650)
T ss_pred C
Confidence 4
No 195
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.77 E-value=8.9e-18 Score=135.49 Aligned_cols=139 Identities=24% Similarity=0.401 Sum_probs=99.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
||+++|.+|+|||||+++|.+.+.. ...|.... +.=.++||||-.-+ +..+...+.....+|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~-----~~KTq~i~--------~~~~~IDTPGEyiE-----~~~~y~aLi~ta~da 64 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR-----YKKTQAIE--------YYDNTIDTPGEYIE-----NPRFYHALIVTAQDA 64 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC-----cCccceeE--------ecccEEECChhhee-----CHHHHHHHHHHHhhC
Confidence 8999999999999999999997642 22222211 12246999993211 223445556667899
Q ss_pred ceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC-ChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHH
Q 017937 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (363)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~ 275 (363)
|+|++|.|++++.......+... -++|+|-|+||+|+. +...+....+++.. .+...+|++|+.+|+|+++|.
T Consensus 65 d~V~ll~dat~~~~~~pP~fa~~-----f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~-aG~~~if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 65 DVVLLLQDATEPRSVFPPGFASM-----FNKPVIGVITKIDLPSDDANIERAKKWLKN-AGVKEIFEVSAVTGEGIEELK 138 (143)
T ss_pred CEEEEEecCCCCCccCCchhhcc-----cCCCEEEEEECccCccchhhHHHHHHHHHH-cCCCCeEEEECCCCcCHHHHH
Confidence 99999999998764443334333 358999999999998 44555555555554 455678999999999999999
Q ss_pred HHHH
Q 017937 276 DWIL 279 (363)
Q Consensus 276 ~~i~ 279 (363)
++|.
T Consensus 139 ~~L~ 142 (143)
T PF10662_consen 139 DYLE 142 (143)
T ss_pred HHHh
Confidence 9985
No 196
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.77 E-value=1.5e-17 Score=133.74 Aligned_cols=156 Identities=22% Similarity=0.295 Sum_probs=110.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
|..+|.++|..|+||||++++|.+.....+++ |.-........+++++++||..| +.. +...|+.|+
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~~~L~iwDvGG--q~~-------lr~~W~nYf 81 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKGYTLNIWDVGG--QKT-------LRSYWKNYF 81 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEecceEEEEEEcCC--cch-------hHHHHHHhh
Confidence 45689999999999999999999987433333 33334445566779999999999 333 345578889
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCC---hhHHHHHH--HHHHhcCCCCcEEEccc
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIK---PGEIAKKL--EWYEKFTDVDEVIPVSA 265 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~---~~~~~~~~--~~~~~~~~~~~i~~vSA 265 (363)
..+|++|||+|++++. +.....+...+... -.+.|+++++||.|+.. .+.+.... ..+. ....++++.|||
T Consensus 82 estdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~-ks~~~~l~~cs~ 160 (185)
T KOG0073|consen 82 ESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELA-KSHHWRLVKCSA 160 (185)
T ss_pred hccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhc-cccCceEEEEec
Confidence 9999999999998754 22223333333221 15689999999999973 33333222 2222 223468999999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 017937 266 KYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l~ 283 (363)
.+|+++.+-++||...+.
T Consensus 161 ~tge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 161 VTGEDLLEGIDWLCDDLM 178 (185)
T ss_pred cccccHHHHHHHHHHHHH
Confidence 999999999999987764
No 197
>PRK10218 GTP-binding protein; Provisional
Probab=99.77 E-value=2.2e-17 Score=164.51 Aligned_cols=201 Identities=17% Similarity=0.201 Sum_probs=136.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccccee---------------cCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV---------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~ 180 (363)
.+|+++|+.++|||||+++|+....... ....+.|.......+.+++..+++|||||+.+ +
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d--f-- 81 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD--F-- 81 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch--h--
Confidence 4899999999999999999996321111 12345565555666778889999999999633 2
Q ss_pred HHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh---HHHHHHHHHHhc---
Q 017937 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAKKLEWYEKF--- 254 (363)
Q Consensus 181 ~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~---~~~~~~~~~~~~--- 254 (363)
...+..+++.+|++|+|+|+.++.......++..+.. .+.|.++|+||+|+.... .+.+..+.+...
T Consensus 82 -----~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~ 154 (607)
T PRK10218 82 -----GGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDAT 154 (607)
T ss_pred -----HHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcc
Confidence 2234556889999999999998876665555555444 678999999999996432 223333333221
Q ss_pred --CCCCcEEEcccCCCC----------CHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCc
Q 017937 255 --TDVDEVIPVSAKYGH----------GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYA 322 (363)
Q Consensus 255 --~~~~~i~~vSAk~g~----------gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s 322 (363)
...+|++++||++|. |+..|++.|.+.++..... .+.|.++.+.. ....+.+|..
T Consensus 155 ~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~------~~~Pl~~~V~k-------~~~d~~~G~i 221 (607)
T PRK10218 155 DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVD------LDGPFQMQISQ-------LDYNSYVGVI 221 (607)
T ss_pred ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCC------CCCCeEEEEEe-------eEecCCCcEE
Confidence 112579999999998 6899999999999754311 12222221111 0134667888
Q ss_pred eEEEEEEEEecCCCeeEE
Q 017937 323 CQVNVVSYKTRPTAKDFI 340 (363)
Q Consensus 323 ~~i~~~~~~~~~~~~~~i 340 (363)
+...+..+....+..+.+
T Consensus 222 ~~gRV~sG~lk~Gd~v~~ 239 (607)
T PRK10218 222 GIGRIKRGKVKPNQQVTI 239 (607)
T ss_pred EEEEEEeCcCcCCCEEEE
Confidence 888999998887655544
No 198
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.76 E-value=3.3e-17 Score=163.44 Aligned_cols=200 Identities=17% Similarity=0.186 Sum_probs=136.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccccce---------------ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhH
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~ 181 (363)
+|+|+|+.++|||||+++|+...... .....+.|.......+.+.+.++++|||||+. .+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~--DF--- 77 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHA--DF--- 77 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHH--HH---
Confidence 79999999999999999998632111 01223556555555677788999999999953 22
Q ss_pred HHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh--H-HHHHHHHHHhcC---
Q 017937 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--E-IAKKLEWYEKFT--- 255 (363)
Q Consensus 182 ~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~-~~~~~~~~~~~~--- 255 (363)
...+..+++.+|++++|+|+.++.......++..+.. .++|+++|+||+|+...+ . ..+....+....
T Consensus 78 ----~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~--~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~ 151 (594)
T TIGR01394 78 ----GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADD 151 (594)
T ss_pred ----HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH--CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccc
Confidence 2334556889999999999998876666666666555 678999999999996432 2 223333332111
Q ss_pred --CCCcEEEcccCCCC----------CHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCce
Q 017937 256 --DVDEVIPVSAKYGH----------GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYAC 323 (363)
Q Consensus 256 --~~~~i~~vSAk~g~----------gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~ 323 (363)
...+++++||++|. |+..|++.|.+.++..... .+.|.++.+.. ....+.+|..+
T Consensus 152 e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~------~~~pl~~~V~~-------i~~d~~~Grv~ 218 (594)
T TIGR01394 152 EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGD------LDEPLQMLVTN-------LDYDEYLGRIA 218 (594)
T ss_pred ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCC------CCCCEEEEEEE-------EEeeCCCceEE
Confidence 12479999999995 8999999999999754321 12222221111 01246678888
Q ss_pred EEEEEEEEecCCCeeEE
Q 017937 324 QVNVVSYKTRPTAKDFI 340 (363)
Q Consensus 324 ~i~~~~~~~~~~~~~~i 340 (363)
...+..++...+..+.+
T Consensus 219 ~gRV~sG~lk~G~~V~~ 235 (594)
T TIGR01394 219 IGRVHRGTVKKGQQVAL 235 (594)
T ss_pred EEEEEeCEEccCCEEEE
Confidence 88999999887755544
No 199
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.76 E-value=8.8e-17 Score=160.30 Aligned_cols=155 Identities=24% Similarity=0.292 Sum_probs=101.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCC-CceEEEEEEEEeC------------------CCeeEEEEeCCCC
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICSG------------------PEYQMILYDTPGI 173 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~-~~t~~~~~~~~~~------------------~~~~i~l~DtpG~ 173 (363)
.|+|.|+++|++|+|||||+++|.+..+. ...+ +.|++........ .-..+.+|||||+
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccc--cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 48889999999999999999999887543 2333 2333221111100 0013789999995
Q ss_pred chhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhH----------
Q 017937 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---------- 243 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---------- 243 (363)
..+..+ +...+..+|++++|+|++++...........++. .+.|+++|+||+|+.....
T Consensus 82 --e~f~~~-------~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~ 150 (586)
T PRK04004 82 --EAFTNL-------RKRGGALADIAILVVDINEGFQPQTIEAINILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLES 150 (586)
T ss_pred --HHHHHH-------HHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCchhhhhhcCchHHHH
Confidence 444333 2234678999999999998765555555555554 6799999999999852110
Q ss_pred -------HH--------HHHHHHH-------------hcCCCCcEEEcccCCCCCHHHHHHHHHh
Q 017937 244 -------IA--------KKLEWYE-------------KFTDVDEVIPVSAKYGHGVEDIRDWILT 280 (363)
Q Consensus 244 -------~~--------~~~~~~~-------------~~~~~~~i~~vSAk~g~gi~eL~~~i~~ 280 (363)
+. +....+. ...+..+++++||++|+|+++|++.+..
T Consensus 151 ~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 151 IEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 0111111 1224468999999999999999988764
No 200
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.76 E-value=2.1e-17 Score=150.03 Aligned_cols=113 Identities=19% Similarity=0.214 Sum_probs=85.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccccc-----ee------------cCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLS-----IV------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~-----~~------------~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~ 179 (363)
+|+++|++|+|||||+++|+..... .+ ....+.|.+.....+.+.+.++++|||||+.+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 4899999999999999999742211 01 12345666666666777889999999999633
Q ss_pred hHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
+...+..+++.+|++++|+|+..+.......+...+.. .++|+++++||+|+..
T Consensus 77 -----f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~--~~~p~ivviNK~D~~~ 130 (270)
T cd01886 77 -----FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR--YNVPRIAFVNKMDRTG 130 (270)
T ss_pred -----HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 22345667889999999999998887766666666655 6789999999999864
No 201
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.76 E-value=7.1e-19 Score=140.16 Aligned_cols=157 Identities=18% Similarity=0.237 Sum_probs=113.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCce---EEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT---RHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t---~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
..+|+++|..-||||||+-+++.++|... ...|- .......+......+.+|||+| ++.++.+...+
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~k--HlsTlQASF~~kk~n~ed~ra~L~IWDTAG--QErfHALGPIY------ 82 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCK--HLSTLQASFQNKKVNVEDCRADLHIWDTAG--QERFHALGPIY------ 82 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchh--hHHHHHHHHhhcccccccceeeeeeeeccc--hHhhhccCceE------
Confidence 34899999999999999999998877421 11110 0000111223446789999999 78888776554
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHH-HHHHHHhcCCCCcEEEcccCCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSAk~g 268 (363)
++.++++++|+|+++.. +....|+.++.......+-++||+||+||...+.+.. ....+....+ ..++++||+.+
T Consensus 83 -YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvG-A~y~eTSAk~N 160 (218)
T KOG0088|consen 83 -YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVG-ALYMETSAKDN 160 (218)
T ss_pred -EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhc-hhheecccccc
Confidence 89999999999999754 6677888877666556788999999999976655432 2233333333 36899999999
Q ss_pred CCHHHHHHHHHhhCC
Q 017937 269 HGVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (363)
.||.+||+.|...+-
T Consensus 161 ~Gi~elFe~Lt~~Mi 175 (218)
T KOG0088|consen 161 VGISELFESLTAKMI 175 (218)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999887664
No 202
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.76 E-value=1e-17 Score=145.66 Aligned_cols=173 Identities=14% Similarity=0.200 Sum_probs=118.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceec-CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh--hhhHHHHHHHHHHhhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKNVRSAG 193 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~--~~~~~~~~~~~~~~~~ 193 (363)
+|+++|.+|+|||||+|+|+|.+..... ..++.|+..........+.++.++||||+.+.. ...+...+.+.+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~ 81 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSA 81 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcC
Confidence 7999999999999999999998765333 245677766666666678899999999986532 2234445555555666
Q ss_pred cccceEEEEeeCCCCCchHHHHHHHhcccc-C--CCCCEEEEEcCCCCCChhHHHHH--------HHHHHhcCCCCcEEE
Q 017937 194 INADCIVVLVDACKAPERIDEILEEGVGDH-K--DKLPILLVLNKKDLIKPGEIAKK--------LEWYEKFTDVDEVIP 262 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~-~--~~~piilV~NK~Dl~~~~~~~~~--------~~~~~~~~~~~~i~~ 262 (363)
..+|+++||+|+.+ ....+..+.+.++.. . .-.++++|+|++|......+.+. ...+....+ .++.
T Consensus 82 ~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~--r~~~ 158 (196)
T cd01852 82 PGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG--RYVA 158 (196)
T ss_pred CCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC--eEEE
Confidence 78999999999987 555444444444332 1 12688999999998754333221 122222222 2323
Q ss_pred c-----ccCCCCCHHHHHHHHHhhCCC-CCCCCCCC
Q 017937 263 V-----SAKYGHGVEDIRDWILTKLPL-GPAYYPKD 292 (363)
Q Consensus 263 v-----SAk~g~gi~eL~~~i~~~l~~-~~~~~~~~ 292 (363)
. |+..+.++.+|++.|.+.+++ ++|.|..+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~ 194 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKENGGKPYTND 194 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 2 366788999999999999987 77777654
No 203
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.76 E-value=3.1e-17 Score=151.70 Aligned_cols=169 Identities=22% Similarity=0.243 Sum_probs=114.8
Q ss_pred EEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeC------------------------CCeeEEEEeCCCC
Q 017937 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG------------------------PEYQMILYDTPGI 173 (363)
Q Consensus 118 i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~i~l~DtpG~ 173 (363)
|+++|.||||||||+|+|++... .+.++|++|.++..+.... ....+.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 58999999999999999999876 4688889887766554321 2367999999998
Q ss_pred chhhhhhHHHHHHHHHHhhccccceEEEEeeCCCC---------------CchH-------HHH----------------
Q 017937 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA---------------PERI-------DEI---------------- 215 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~---------------~~~~-------~~~---------------- 215 (363)
...... ...+...+...+++||++++|+|++.. .... ..|
T Consensus 80 v~ga~~--~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~ 157 (318)
T cd01899 80 VPGAHE--GKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKA 157 (318)
T ss_pred CCCccc--hhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543211 111223455668999999999999731 0000 000
Q ss_pred ------------------------HHHhccc----------------------cCCCCCEEEEEcCCCCCChhHHHHHHH
Q 017937 216 ------------------------LEEGVGD----------------------HKDKLPILLVLNKKDLIKPGEIAKKLE 249 (363)
Q Consensus 216 ------------------------~~~~~~~----------------------~~~~~piilV~NK~Dl~~~~~~~~~~~ 249 (363)
+...+.. ....+|+|+|+||+|+........
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~--- 234 (318)
T cd01899 158 DAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNIS--- 234 (318)
T ss_pred hcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHH---
Confidence 0000000 013579999999999875544332
Q ss_pred HHHhcCCCCcEEEcccCCCCCHHHHHH-HHHhhCCCCCCCCCCC
Q 017937 250 WYEKFTDVDEVIPVSAKYGHGVEDIRD-WILTKLPLGPAYYPKD 292 (363)
Q Consensus 250 ~~~~~~~~~~i~~vSAk~g~gi~eL~~-~i~~~l~~~~~~~~~~ 292 (363)
.+.......+++++||+.+.|+++|.+ .+.+.++++++..-..
T Consensus 235 ~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~~ 278 (318)
T cd01899 235 KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEITD 278 (318)
T ss_pred HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceecc
Confidence 222233455799999999999999998 6999999988765433
No 204
>PRK12736 elongation factor Tu; Reviewed
Probab=99.76 E-value=1.9e-17 Score=158.68 Aligned_cols=201 Identities=16% Similarity=0.126 Sum_probs=131.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccc---------------eecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~ 178 (363)
...+|+++|++++|||||+++|++.... ......+.|.+.....+..++.++.++||||+. .
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~--~- 87 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA--D- 87 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH--H-
Confidence 3458999999999999999999863110 011255777777666666677899999999952 2
Q ss_pred hhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCC-EEEEEcCCCCCChhHHHH-----HHHHHH
Q 017937 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-----KLEWYE 252 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~-----~~~~~~ 252 (363)
+...+...+..+|++++|+|+..+.......+..++.. .++| +|+|+||+|+.+..+..+ ....+.
T Consensus 88 ------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~--~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~ 159 (394)
T PRK12736 88 ------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLS 159 (394)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 23444555678999999999998776666666666655 5677 678999999985443322 112222
Q ss_pred hcC---CCCcEEEcccCCCC--------CHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhc-cCCCC
Q 017937 253 KFT---DVDEVIPVSAKYGH--------GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQY-RNEVP 320 (363)
Q Consensus 253 ~~~---~~~~i~~vSAk~g~--------gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~-~~evp 320 (363)
... ...+++++||++|. ++..|++.|.+.++..... .+.|.++.+.+ .+ .+.+|
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~------~~~p~r~~I~~--------~~~~~g~G 225 (394)
T PRK12736 160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERD------TDKPFLMPVED--------VFTITGRG 225 (394)
T ss_pred HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCC------CCCCeEEEEEE--------EEecCCcE
Confidence 211 23589999999983 6899999999888642211 12333322211 11 24455
Q ss_pred CceEEEEEEEEecCCCeeE
Q 017937 321 YACQVNVVSYKTRPTAKDF 339 (363)
Q Consensus 321 ~s~~i~~~~~~~~~~~~~~ 339 (363)
....-.+..+....+..+.
T Consensus 226 ~Vv~G~v~~G~l~~gd~v~ 244 (394)
T PRK12736 226 TVVTGRVERGTVKVGDEVE 244 (394)
T ss_pred EEEEEEEeecEEecCCEEE
Confidence 5555567777666554443
No 205
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.75 E-value=6.3e-18 Score=150.72 Aligned_cols=157 Identities=32% Similarity=0.406 Sum_probs=119.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
+|+++|.|+||||||+|+|++.+.. +..++.||...+.+.+.+++.+++++|+||+......... .-+++....++|
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~se-va~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~g--rG~~vlsv~R~A 141 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKSE-VADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRG--RGRQVLSVARNA 141 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCcc-ccccCceecccccceEeecCceEEEEcCcccccCcccCCC--CcceeeeeeccC
Confidence 8999999999999999999998754 7899999999999999999999999999998764432221 013355668999
Q ss_pred ceEEEEeeCCCCCchHHH--------------------------------------------------------------
Q 017937 197 DCIVVLVDACKAPERIDE-------------------------------------------------------------- 214 (363)
Q Consensus 197 d~ii~VvD~~~~~~~~~~-------------------------------------------------------------- 214 (363)
|++++|+|+.......+.
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir 221 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR 221 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence 999999999865421110
Q ss_pred ------HHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 215 ------ILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 215 ------~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
.+...+.....-+|.+.|.||+|+...+......+. ..++++||+++.|+++|.+.|.+.+.
T Consensus 222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~-------~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 222 EDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARK-------PNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred cCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhc-------cceEEEecccCCCHHHHHHHHHHhhC
Confidence 111111111235799999999999986555443332 26899999999999999999999773
No 206
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.75 E-value=9.5e-17 Score=145.63 Aligned_cols=114 Identities=22% Similarity=0.245 Sum_probs=80.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccccee---------------cC------CCCceEEEEEEEEeCCCeeEEEEeCCCCc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV---------------TN------KPQTTRHRILGICSGPEYQMILYDTPGII 174 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~---------------~~------~~~~t~~~~~~~~~~~~~~i~l~DtpG~~ 174 (363)
.+|+++|++|+|||||+++|+.....+. .+ ..+.+.......+.+.+.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 3799999999999999999985432110 00 01222233344567788999999999953
Q ss_pred hhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
+ + ...+..+++.+|++|+|+|++.+.......+...... .++|+++++||+|+..
T Consensus 83 d--f-------~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~--~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 D--F-------SEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL--RGIPIITFINKLDREG 137 (267)
T ss_pred H--H-------HHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh--cCCCEEEEEECCccCC
Confidence 2 2 1224455788999999999998776555555555544 5789999999999864
No 207
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.74 E-value=1.4e-17 Score=147.35 Aligned_cols=146 Identities=19% Similarity=0.191 Sum_probs=96.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccccc------------------------------eecCCCCceEEEEEEEEeCCCeeEE
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLS------------------------------IVTNKPQTTRHRILGICSGPEYQMI 166 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~~i~ 166 (363)
+|+++|++++|||||+.+|+..... ......++|++.....+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999999642110 0112346777777777888889999
Q ss_pred EEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCC-------CchHHHHHHHhccccCCCCCEEEEEcCCCCC
Q 017937 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (363)
Q Consensus 167 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~-------~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 239 (363)
+|||||+.. + ...+...+..+|++|+|+|++++ ............... ..+|+++|+||+|+.
T Consensus 81 liDtpG~~~--~-------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiivvNK~Dl~ 150 (219)
T cd01883 81 ILDAPGHRD--F-------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-GVKQLIVAVNKMDDV 150 (219)
T ss_pred EEECCChHH--H-------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-CCCeEEEEEEccccc
Confidence 999999532 1 23344557889999999999874 222222222222221 236899999999997
Q ss_pred C----hhHHHHHHHH----HHhcC---CCCcEEEcccCCCCCHH
Q 017937 240 K----PGEIAKKLEW----YEKFT---DVDEVIPVSAKYGHGVE 272 (363)
Q Consensus 240 ~----~~~~~~~~~~----~~~~~---~~~~i~~vSAk~g~gi~ 272 (363)
. .......... +.... ...+++++||++|.|++
T Consensus 151 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 151 TVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 3 2222222222 22221 13579999999999987
No 208
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.74 E-value=4.9e-17 Score=133.57 Aligned_cols=151 Identities=23% Similarity=0.203 Sum_probs=96.3
Q ss_pred EEcCCCCChHHHHHHHhccccceecCCCCceEEE--EEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccc
Q 017937 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR--ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (363)
Q Consensus 120 i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad 197 (363)
++|++|+|||||+|++.+..... .....+.... ........+..+.+||+||+... .. .....+..+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~-------~~~~~~~~~~ 70 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF--RS-------LRRLYYRGAD 70 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-cccccchhheeeEEEEECCEEEEEEEEecCChHHH--Hh-------HHHHHhcCCC
Confidence 58999999999999999876521 1111111222 22222233578999999995322 11 1234578999
Q ss_pred eEEEEeeCCCCCchH--HHH-HHHhccccCCCCCEEEEEcCCCCCChhHHHHHH-HHHHhcCCCCcEEEcccCCCCCHHH
Q 017937 198 CIVVLVDACKAPERI--DEI-LEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGVED 273 (363)
Q Consensus 198 ~ii~VvD~~~~~~~~--~~~-~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~i~~vSAk~g~gi~e 273 (363)
++++|+|++++.... ..+ ..........+.|+++|+||+|+.......... ..........+++++||+++.|+.+
T Consensus 71 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 71 GIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEE 150 (157)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHH
Confidence 999999998765222 222 111112223689999999999997654433321 1122223446899999999999999
Q ss_pred HHHHHHh
Q 017937 274 IRDWILT 280 (363)
Q Consensus 274 L~~~i~~ 280 (363)
++++|.+
T Consensus 151 ~~~~l~~ 157 (157)
T cd00882 151 LFEELAE 157 (157)
T ss_pred HHHHHhC
Confidence 9999863
No 209
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=5.5e-17 Score=153.13 Aligned_cols=157 Identities=20% Similarity=0.210 Sum_probs=124.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe-CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
.|+|.|.|+|+...|||||+.+|.+..++ .....|.|.+.--..+. ..|..++|.|||| +..|..|+.++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VA-A~E~GGITQhIGAF~V~~p~G~~iTFLDTPG--HaAF~aMRaRG------ 221 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVA-AGEAGGITQHIGAFTVTLPSGKSITFLDTPG--HAAFSAMRARG------ 221 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCcee-hhhcCCccceeceEEEecCCCCEEEEecCCc--HHHHHHHHhcc------
Confidence 48889999999999999999999998876 35667788876444433 2568999999999 56777776655
Q ss_pred hccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHH-------HHhcCCCCcEEEcc
Q 017937 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW-------YEKFTDVDEVIPVS 264 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~-------~~~~~~~~~i~~vS 264 (363)
..-+|++++|+.+.++...+........+. .+.|+++++||||.+.... +..... +...++..+++++|
T Consensus 222 -A~vtDIvVLVVAadDGVmpQT~EaIkhAk~--A~VpiVvAinKiDkp~a~p-ekv~~eL~~~gi~~E~~GGdVQvipiS 297 (683)
T KOG1145|consen 222 -ANVTDIVVLVVAADDGVMPQTLEAIKHAKS--ANVPIVVAINKIDKPGANP-EKVKRELLSQGIVVEDLGGDVQVIPIS 297 (683)
T ss_pred -CccccEEEEEEEccCCccHhHHHHHHHHHh--cCCCEEEEEeccCCCCCCH-HHHHHHHHHcCccHHHcCCceeEEEee
Confidence 678999999999999998887777777776 7899999999999875432 222222 33466778999999
Q ss_pred cCCCCCHHHHHHHHHhhC
Q 017937 265 AKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 265 Ak~g~gi~eL~~~i~~~l 282 (363)
|++|.|++.|.+.+.-..
T Consensus 298 Al~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 298 ALTGENLDLLEEAILLLA 315 (683)
T ss_pred cccCCChHHHHHHHHHHH
Confidence 999999999999876543
No 210
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.74 E-value=9.4e-17 Score=154.53 Aligned_cols=161 Identities=19% Similarity=0.227 Sum_probs=102.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce--ecCCCCceEEEEEE--------------------EEeC------CCeeE
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILG--------------------ICSG------PEYQM 165 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~--~~~~~~~t~~~~~~--------------------~~~~------~~~~i 165 (363)
...+|+++|++++|||||+++|.+..... .....+.|...... .+.. ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 34589999999999999999997642110 01111222211100 0011 14679
Q ss_pred EEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC-chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH
Q 017937 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (363)
Q Consensus 166 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~ 244 (363)
.+|||||+ .. +...+...+..+|++++|+|++++. ..........+... ...|+++|+||+|+.+....
T Consensus 83 ~liDtPGh--~~-------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~~ 152 (406)
T TIGR03680 83 SFVDAPGH--ET-------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-GIKNIVIVQNKIDLVSKEKA 152 (406)
T ss_pred EEEECCCH--HH-------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-CCCeEEEEEEccccCCHHHH
Confidence 99999995 22 2344555567899999999999764 33333333333331 23579999999999865443
Q ss_pred HHHHHHHHhc-----CCCCcEEEcccCCCCCHHHHHHHHHhhCCC
Q 017937 245 AKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 245 ~~~~~~~~~~-----~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
......+... ....+++++||++|.|+++|+++|...++.
T Consensus 153 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 153 LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 2222222211 123579999999999999999999987763
No 211
>CHL00071 tufA elongation factor Tu
Probab=99.73 E-value=1.7e-16 Score=152.91 Aligned_cols=159 Identities=18% Similarity=0.186 Sum_probs=112.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce---------------ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~ 178 (363)
...+|+++|++++|||||+++|++..... .....+.|.+.....+..++.++.|+||||+.
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~---- 86 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA---- 86 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH----
Confidence 34589999999999999999999752211 12235677776655666777899999999952
Q ss_pred hhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCC-EEEEEcCCCCCChhHHHH-----HHHHHH
Q 017937 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-----KLEWYE 252 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~-----~~~~~~ 252 (363)
.+...+...+..+|++++|+|+..+...+...+...+.. .++| +|+|+||+|+.+..+..+ ....+.
T Consensus 87 -----~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~ 159 (409)
T CHL00071 87 -----DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLS 159 (409)
T ss_pred -----HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence 234455566789999999999998887777666666665 5678 778999999986544321 222222
Q ss_pred hcC---CCCcEEEcccCCCCC------------------HHHHHHHHHhhCC
Q 017937 253 KFT---DVDEVIPVSAKYGHG------------------VEDIRDWILTKLP 283 (363)
Q Consensus 253 ~~~---~~~~i~~vSAk~g~g------------------i~eL~~~i~~~l~ 283 (363)
... ...+++++||.+|.| +..|++.|...++
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~ 211 (409)
T CHL00071 160 KYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIP 211 (409)
T ss_pred HhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCC
Confidence 211 136899999999863 4667777776653
No 212
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.73 E-value=8.9e-17 Score=158.35 Aligned_cols=229 Identities=20% Similarity=0.154 Sum_probs=140.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce-----e----------cC------CCCceEEEEEEEEeCCCeeEEEEeCCC
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----V----------TN------KPQTTRHRILGICSGPEYQMILYDTPG 172 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~-----~----------~~------~~~~t~~~~~~~~~~~~~~i~l~DtpG 172 (363)
+..+|+|+|++|+|||||+++|+.....+ + ++ ..+.+.......+.++++.+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 34489999999999999999997422110 0 10 012222233344667789999999999
Q ss_pred CchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhH---HHHHHH
Q 017937 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLE 249 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~ 249 (363)
+.+ + ...+..++..+|++|+|+|++++.......+....+. .++|+++++||+|+..... +.++..
T Consensus 89 ~~d--f-------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~iPiiv~iNK~D~~~a~~~~~l~~i~~ 157 (526)
T PRK00741 89 HED--F-------SEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL--RDTPIFTFINKLDRDGREPLELLDEIEE 157 (526)
T ss_pred chh--h-------HHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh--cCCCEEEEEECCcccccCHHHHHHHHHH
Confidence 632 2 2234455788999999999998876666666666655 6899999999999864221 111111
Q ss_pred HHH-----------------------------------------------------------------------------
Q 017937 250 WYE----------------------------------------------------------------------------- 252 (363)
Q Consensus 250 ~~~----------------------------------------------------------------------------- 252 (363)
.+.
T Consensus 158 ~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~ 237 (526)
T PRK00741 158 VLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNE 237 (526)
T ss_pred HhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccc
Confidence 000
Q ss_pred ------hcCCCCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCC-CCCCchHHHHHHHHHHHHHHhhc----cCCCCC
Q 017937 253 ------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD-IVSEHPERFFVGEIIREKIFMQY----RNEVPY 321 (363)
Q Consensus 253 ------~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~-~~~~~~~~~~~~eiire~i~~~~----~~evp~ 321 (363)
......|+|..||.+|.||..|++.|.+.+|......... ........ +.+ .+|... .+..+.
T Consensus 238 ~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~-~~~-----~VFK~~~~m~~~~~gr 311 (526)
T PRK00741 238 FDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEK-FSG-----FVFKIQANMDPKHRDR 311 (526)
T ss_pred hhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCc-eEE-----EEEEEEecCCCCcCce
Confidence 0012257999999999999999999999998542111000 00000000 010 111111 235678
Q ss_pred ceEEEEEEEEecCCCeeEEEEEEEEeeCCceeEEecCC
Q 017937 322 ACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKV 359 (363)
Q Consensus 322 s~~i~~~~~~~~~~~~~~i~~~i~~~~~~q~~ivig~~ 359 (363)
.+.+++.+++...+..+.....-.-++-++.+.+.|..
T Consensus 312 lafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~ 349 (526)
T PRK00741 312 IAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQD 349 (526)
T ss_pred EEEEEEeccEECCCCEEEeccCCceEEecceEEEecCC
Confidence 89999999999887666543332234555555555543
No 213
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.73 E-value=3.2e-17 Score=131.54 Aligned_cols=158 Identities=22% Similarity=0.335 Sum_probs=114.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEE---EEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR---ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~---~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 190 (363)
...++.++|++-||||||+..+...+++..++ |....+. ....-.+...++.+|||+| ++.+.++ .+
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsd-ptvgvdffarlie~~pg~riklqlwdtag--qerfrsi-------tk 76 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSD-PTVGVDFFARLIELRPGYRIKLQLWDTAG--QERFRSI-------TK 76 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCC-CccchHHHHHHHhcCCCcEEEEEEeeccc--hHHHHHH-------HH
Confidence 34589999999999999999999988875442 2222221 1222334457899999999 6666554 55
Q ss_pred hhccccceEEEEeeCCCCC--chHHHHHHHhccccC--CCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEccc
Q 017937 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK--DKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSA 265 (363)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~--~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA 265 (363)
+|++++-++++|+|+++.. +....|+.+...... .++-+.+|+.|+||...+++. +..+.+.+..+. .++++||
T Consensus 77 syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM-~FVETSa 155 (213)
T KOG0091|consen 77 SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGM-AFVETSA 155 (213)
T ss_pred HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCc-eEEEecc
Confidence 6689999999999999754 666777776554432 344578999999998766553 334455555554 7999999
Q ss_pred CCCCCHHHHHHHHHhhC
Q 017937 266 KYGHGVEDIRDWILTKL 282 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l 282 (363)
++|.||++.|..|.+.+
T Consensus 156 k~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 156 KNGCNVEEAFDMLAQEI 172 (213)
T ss_pred cCCCcHHHHHHHHHHHH
Confidence 99999999999887654
No 214
>PRK09866 hypothetical protein; Provisional
Probab=99.72 E-value=2e-16 Score=153.86 Aligned_cols=116 Identities=20% Similarity=0.242 Sum_probs=81.4
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC--
Q 017937 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK-- 240 (363)
Q Consensus 163 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~-- 240 (363)
.+++|+||||+.......+...+. ..+..+|+|+||+|+.......+..+.+.++......|+++|+||+|+.+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~----eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dre 305 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLN----QQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRN 305 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHH----HHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcc
Confidence 468999999985422233444443 35899999999999988666666667776665322359999999999975
Q ss_pred ---hhHHHHHHHHH--HhcCCCCcEEEcccCCCCCHHHHHHHHHhhC
Q 017937 241 ---PGEIAKKLEWY--EKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 241 ---~~~~~~~~~~~--~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
...+....... .....+..+|++||++|.|++.|++.|...-
T Consensus 306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~ 352 (741)
T PRK09866 306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNG 352 (741)
T ss_pred cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCC
Confidence 22333332222 2223456799999999999999999998743
No 215
>PRK12735 elongation factor Tu; Reviewed
Probab=99.72 E-value=3.3e-16 Score=150.30 Aligned_cols=160 Identities=19% Similarity=0.180 Sum_probs=111.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc-------ccc--------eecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ-------KLS--------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~-------~~~--------~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~ 178 (363)
...+|+++|++++|||||+++|++. .+. ......+.|.+.....+..++.++.|+||||+.
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA---- 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH----
Confidence 4458999999999999999999862 110 011245667776655666677899999999952
Q ss_pred hhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEE-EEEcCCCCCChhHHH-----HHHHHHH
Q 017937 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIA-----KKLEWYE 252 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~pii-lV~NK~Dl~~~~~~~-----~~~~~~~ 252 (363)
.+...+...+..+|++++|+|+..+.......+...+.. .++|.+ +|+||+|+.+..+.. +....+.
T Consensus 87 -----~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 87 -----DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred -----HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 234455566789999999999998766655555555554 567865 579999998543322 1222222
Q ss_pred hcC---CCCcEEEcccCCCC----------CHHHHHHHHHhhCCC
Q 017937 253 KFT---DVDEVIPVSAKYGH----------GVEDIRDWILTKLPL 284 (363)
Q Consensus 253 ~~~---~~~~i~~vSAk~g~----------gi~eL~~~i~~~l~~ 284 (363)
... ...+++++||++|. ++..|++.|.+.++.
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~ 204 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPE 204 (396)
T ss_pred HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCC
Confidence 221 23689999999984 688899999887763
No 216
>PLN03127 Elongation factor Tu; Provisional
Probab=99.72 E-value=3.2e-16 Score=151.77 Aligned_cols=160 Identities=19% Similarity=0.193 Sum_probs=112.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc------ccce---------ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSI---------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~------~~~~---------~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~ 178 (363)
...+|+++|++++|||||+++|.+. .... .....+.|.+.....+..++.++.++||||+..
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~--- 136 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD--- 136 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc---
Confidence 3458999999999999999999732 1111 123367888877777777888999999999632
Q ss_pred hhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCC-EEEEEcCCCCCChhHHHHHHH-HHH---h
Q 017937 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKLE-WYE---K 253 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~~~~-~~~---~ 253 (363)
+...+...+..+|++++|+|+..+...++..+...+.. .++| +|+|+||+|+.+..+..+... .+. .
T Consensus 137 ------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~--~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~ 208 (447)
T PLN03127 137 ------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ--VGVPSLVVFLNKVDVVDDEELLELVEMELRELLS 208 (447)
T ss_pred ------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 33444445668999999999998877777777776665 6788 578899999986443322211 211 1
Q ss_pred c----CCCCcEEEcccC---CCCC-------HHHHHHHHHhhCCC
Q 017937 254 F----TDVDEVIPVSAK---YGHG-------VEDIRDWILTKLPL 284 (363)
Q Consensus 254 ~----~~~~~i~~vSAk---~g~g-------i~eL~~~i~~~l~~ 284 (363)
. ....+++++||. +|.| +..|+++|.+.++.
T Consensus 209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~ 253 (447)
T PLN03127 209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPE 253 (447)
T ss_pred HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCC
Confidence 1 123578888876 4555 78999999988763
No 217
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.72 E-value=6.1e-17 Score=157.11 Aligned_cols=150 Identities=21% Similarity=0.219 Sum_probs=99.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce------------------------------ecCCCCceEEEEEEEEeCCCe
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI------------------------------VTNKPQTTRHRILGICSGPEY 163 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~ 163 (363)
...+|+++|++++|||||+++|+...... .....+.|.+.....+..++.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 34589999999999999999998532110 012346777777777888889
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCC---CchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA---PERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 164 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~---~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
.+.+|||||+ .. +...+...+..+|++++|+|++++ ............+.. ...|+++|+||+|+.+
T Consensus 86 ~i~iiDtpGh--~~-------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 86 EVTIVDCPGH--RD-------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVN 155 (426)
T ss_pred EEEEEECCCH--HH-------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccC
Confidence 9999999994 22 233444557899999999999987 322222222222221 2357999999999974
Q ss_pred --hhHHH----HHHHHHHhcC---CCCcEEEcccCCCCCHHH
Q 017937 241 --PGEIA----KKLEWYEKFT---DVDEVIPVSAKYGHGVED 273 (363)
Q Consensus 241 --~~~~~----~~~~~~~~~~---~~~~i~~vSAk~g~gi~e 273 (363)
..... +....+.... ...+++++||++|.|+++
T Consensus 156 ~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 156 YDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 22221 2222222221 235799999999999986
No 218
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=4.4e-17 Score=134.50 Aligned_cols=160 Identities=19% Similarity=0.239 Sum_probs=116.2
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 112 ~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
..+..+|+++|..|+||||++++|...++.... .|.......+...+..+.+||..| +.+... .++.
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttv----PTiGfnVE~v~ykn~~f~vWDvGG--q~k~R~-------lW~~ 80 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTV----PTIGFNVETVEYKNISFTVWDVGG--QEKLRP-------LWKH 80 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccCC----CccccceeEEEEcceEEEEEecCC--Cccccc-------chhh
Confidence 346669999999999999999999877764332 233333444556689999999999 444332 3667
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccC-CCCCEEEEEcCCCCCCh---hHHHHHHHHHHhcCCCCcEEEccc
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKP---GEIAKKLEWYEKFTDVDEVIPVSA 265 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~-~~~piilV~NK~Dl~~~---~~~~~~~~~~~~~~~~~~i~~vSA 265 (363)
|+.+.+++|||+|+++.. ....+.+...+.... .+.|+++.+||.|+... .++.+......-....+.+..|+|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 799999999999999765 334445555554432 57999999999999754 334443333333334557899999
Q ss_pred CCCCCHHHHHHHHHhhCCC
Q 017937 266 KYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l~~ 284 (363)
.+|+|+.+-++||.+.+..
T Consensus 161 ~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cccccHHHHHHHHHHHHhc
Confidence 9999999999999988754
No 219
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.72 E-value=4.8e-17 Score=146.30 Aligned_cols=164 Identities=21% Similarity=0.218 Sum_probs=119.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhh--hHHHHHHHHHHhhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIH--MLDSMMMKNVRSAG 193 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~--~~~~~~~~~~~~~~ 193 (363)
-|+++|.||+|||||++++...+.. +.++|.||..+..+.+.. .+..+++-|.||+++.... .+...| .+.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPK-IadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~F----LrHI 235 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPK-IADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRF----LRHI 235 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCc-ccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHH----HHHH
Confidence 5899999999999999999998765 689999999998888774 5567999999999875432 233333 3346
Q ss_pred cccceEEEEeeCCCCC----chHHHHHHHhccccC---CCCCEEEEEcCCCCC-ChhHHHHHHHHHHhcCCCCcEEEccc
Q 017937 194 INADCIVVLVDACKAP----ERIDEILEEGVGDHK---DKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSA 265 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~----~~~~~~~~~~~~~~~---~~~piilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (363)
..|.++++|+|++... ......+...+..+. .++|.+||+||+|+. ..+..+.....+....+....+++||
T Consensus 236 ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa 315 (369)
T COG0536 236 ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISA 315 (369)
T ss_pred HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeeh
Confidence 7889999999998433 122222333333221 578999999999965 44555555566555444433333999
Q ss_pred CCCCCHHHHHHHHHhhCCCC
Q 017937 266 KYGHGVEDIRDWILTKLPLG 285 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l~~~ 285 (363)
.+++|+++|...+.+.+...
T Consensus 316 ~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 316 LTREGLDELLRALAELLEET 335 (369)
T ss_pred hcccCHHHHHHHHHHHHHHh
Confidence 99999999999999888654
No 220
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.72 E-value=2.2e-16 Score=151.91 Aligned_cols=161 Identities=19% Similarity=0.196 Sum_probs=102.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccc--ceecCCCCceEEEEEEE--------------E------eC-C-----CeeE
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKL--SIVTNKPQTTRHRILGI--------------C------SG-P-----EYQM 165 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~--~~~~~~~~~t~~~~~~~--------------~------~~-~-----~~~i 165 (363)
...+|+++|+.++|||||+.+|.+... .......+.|....... + .. + ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 345899999999999999999976311 11111233343321100 0 00 0 2679
Q ss_pred EEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC-chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH
Q 017937 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (363)
Q Consensus 166 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~ 244 (363)
.+|||||+ .. +...+...+..+|++++|+|++++. ..........+... ...|+++|+||+|+.+....
T Consensus 88 ~liDtPG~--~~-------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-~i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 88 SFVDAPGH--ET-------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-GIKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred EEEECCCH--HH-------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEEeeccccchhH
Confidence 99999994 22 2334555567889999999999764 33333333333331 23479999999999865443
Q ss_pred HHHHHHHHhc-----CCCCcEEEcccCCCCCHHHHHHHHHhhCCC
Q 017937 245 AKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 245 ~~~~~~~~~~-----~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
......+... ....+++++||++|.|+++|+++|...++.
T Consensus 158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 2222222211 123589999999999999999999998764
No 221
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.72 E-value=1.6e-16 Score=156.66 Aligned_cols=227 Identities=21% Similarity=0.159 Sum_probs=140.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce-----ec----------C------CCCceEEEEEEEEeCCCeeEEEEeCCC
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----VT----------N------KPQTTRHRILGICSGPEYQMILYDTPG 172 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~-----~~----------~------~~~~t~~~~~~~~~~~~~~i~l~DtpG 172 (363)
+..+|+|+|++++|||||+++|+.....+ +. + ..+.+.......+.+.+.++++|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 44589999999999999999986322110 10 0 112233333445667889999999999
Q ss_pred CchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC--hhHHHHHHH-
Q 017937 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK--PGEIAKKLE- 249 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~--~~~~~~~~~- 249 (363)
+. . +...+..++..+|++|+|+|++++.......+.+.++. .++|+++++||+|+.. ..++.+.++
T Consensus 90 ~~--d-------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~~PiivviNKiD~~~~~~~~ll~~i~~ 158 (527)
T TIGR00503 90 HE--D-------FSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL--RDTPIFTFMNKLDRDIRDPLELLDEVEN 158 (527)
T ss_pred hh--h-------HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECccccCCCHHHHHHHHHH
Confidence 62 2 22334556789999999999998876666666666655 6799999999999853 221111000
Q ss_pred HHH-----------------------------------------------------------------------------
Q 017937 250 WYE----------------------------------------------------------------------------- 252 (363)
Q Consensus 250 ~~~----------------------------------------------------------------------------- 252 (363)
.+.
T Consensus 159 ~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~ 238 (527)
T TIGR00503 159 ELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNE 238 (527)
T ss_pred HhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccc
Confidence 000
Q ss_pred ------hcCCCCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCC--CCCchHHHHHHHHHHHHHHhhc---c-CCCC
Q 017937 253 ------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDI--VSEHPERFFVGEIIREKIFMQY---R-NEVP 320 (363)
Q Consensus 253 ------~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~--~~~~~~~~~~~eiire~i~~~~---~-~evp 320 (363)
......|+|..||.++.||..|++.|.+.+|.... .+... +...... +. ..+|... . +..|
T Consensus 239 ~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~-~~~~~~~~~~~~~~-~~-----~~VFK~~~~mdp~~~g 311 (527)
T TIGR00503 239 FDLAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEA-RQSDTRTVEPTEEK-FS-----GFVFKIQANMDPKHRD 311 (527)
T ss_pred cCHHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCcc-ccCCceecCCCCCC-ee-----EEEEEEEeccCcccCc
Confidence 01123477999999999999999999999985421 11100 0000001 01 1122222 2 3678
Q ss_pred CceEEEEEEEEecCCCeeEEEEEEEEeeCCceeEEecC
Q 017937 321 YACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGK 358 (363)
Q Consensus 321 ~s~~i~~~~~~~~~~~~~~i~~~i~~~~~~q~~ivig~ 358 (363)
..+.+++.+++...+..+.....-.-++-++.+.+.|+
T Consensus 312 riaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~ 349 (527)
T TIGR00503 312 RVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAG 349 (527)
T ss_pred eEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcC
Confidence 89999999999987765544322222344444444443
No 222
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.71 E-value=1.7e-16 Score=162.47 Aligned_cols=116 Identities=17% Similarity=0.149 Sum_probs=87.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce-----ec------------CCCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----VT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~-----~~------------~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~ 176 (363)
+-.+|+|+|++|+|||||+++|++..... +. ...++|.......+.+.+.++++|||||+.+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 34489999999999999999997532211 11 13466777767777788899999999997431
Q ss_pred hhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
...+..++..+|++++|+|+.++.......+...+.. .++|+++|+||+|+..
T Consensus 89 ---------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 89 ---------TVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR--YEVPRIAFVNKMDKTG 141 (689)
T ss_pred ---------hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 1234556789999999999998876666666666555 6789999999999874
No 223
>PRK12739 elongation factor G; Reviewed
Probab=99.71 E-value=1.9e-16 Score=161.98 Aligned_cols=116 Identities=20% Similarity=0.228 Sum_probs=89.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccc-----eec------------CCCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----IVT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~-----~~~------------~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~ 176 (363)
+..+|+|+|++|+|||||+++|+..... .+. ...++|.+.....+.+++.+++++||||+..
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~- 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD- 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH-
Confidence 4458999999999999999999753211 111 2456677766666777889999999999632
Q ss_pred hhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
+...+..++..+|++|+|+|+..+....+..+...+.. .++|+|+++||+|+..
T Consensus 86 --------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~--~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 --------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK--YGVPRIVFVNKMDRIG 139 (691)
T ss_pred --------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 22346667889999999999999887777777776665 6789999999999974
No 224
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.71 E-value=6.1e-16 Score=148.51 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=108.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc------ccc---------eecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLS---------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~------~~~---------~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~ 178 (363)
+..+|+++|+.++|||||+++|++. ... ......+.|.+.....+..++.++.+|||||+. .
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~--~- 87 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA--D- 87 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH--H-
Confidence 4558999999999999999999743 100 012236777777666666777889999999952 2
Q ss_pred hhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEE-EEEcCCCCCChhHHHH-----HHHHHH
Q 017937 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIAK-----KLEWYE 252 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~pii-lV~NK~Dl~~~~~~~~-----~~~~~~ 252 (363)
+...+...+..+|++++|+|+..+.......+...+.. .+.|.+ +|+||+|+.+..+..+ ....+.
T Consensus 88 ------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 88 ------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 23344455678999999999998776666555555554 467755 6899999986543221 222232
Q ss_pred hcC---CCCcEEEcccCCCC--------CHHHHHHHHHhhCC
Q 017937 253 KFT---DVDEVIPVSAKYGH--------GVEDIRDWILTKLP 283 (363)
Q Consensus 253 ~~~---~~~~i~~vSAk~g~--------gi~eL~~~i~~~l~ 283 (363)
... ...+++++||++|. ++..|++.|.+.++
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~ 201 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIP 201 (394)
T ss_pred hcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCC
Confidence 221 12689999999885 35567777766554
No 225
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.71 E-value=1.1e-16 Score=138.13 Aligned_cols=159 Identities=21% Similarity=0.259 Sum_probs=109.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEE--EEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR--ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||+|+.++++..|.. .+.+|..+. ....++.....+.++||+| +..+..+...
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~--~y~ptied~y~k~~~v~~~~~~l~ilDt~g--~~~~~~~~~~------- 70 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVE--DYDPTIEDSYRKELTVDGEVCMLEILDTAG--QEEFSAMRDL------- 70 (196)
T ss_pred CceEEEEECCCCCCcchheeeeccccccc--ccCCCccccceEEEEECCEEEEEEEEcCCC--cccChHHHHH-------
Confidence 34589999999999999999999988853 333333333 3334445567888999999 4444444333
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHH-HHHHHhcCCCCcEEEcccCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~i~~vSAk~ 267 (363)
++..+|++++|+++++.. +.....+..+.+.. ....|+++|+||+|+...+.+... ...+....+ ++++++||+.
T Consensus 71 ~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~-~~f~E~Sak~ 149 (196)
T KOG0395|consen 71 YIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWG-CAFIETSAKL 149 (196)
T ss_pred hhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcC-CcEEEeeccC
Confidence 378899999999998754 33333333332221 156899999999999864443222 122233233 4699999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 017937 268 GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (363)
+.+++++|..|...+..
T Consensus 150 ~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 150 NYNVDEVFYELVREIRL 166 (196)
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999986653
No 226
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.71 E-value=3.3e-16 Score=142.80 Aligned_cols=113 Identities=27% Similarity=0.310 Sum_probs=78.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccccce-----ecC------------CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSI-----VTN------------KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~-----~~~------------~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~ 179 (363)
+|+++|++|+|||||+++|++..... +.. ..+.+.......+.+.+..+++|||||+..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~---- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD---- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence 48999999999999999998543211 100 012222233344566788999999999532
Q ss_pred hHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
+...+..++..+|++++|+|++.+.......+...+.. .+.|+++|+||+|+..
T Consensus 77 -----f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~--~~~p~iivvNK~D~~~ 130 (268)
T cd04170 77 -----FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE--AGIPRIIFINKMDRER 130 (268)
T ss_pred -----HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCccCC
Confidence 12334556789999999999998776555555555544 6789999999999864
No 227
>PRK00007 elongation factor G; Reviewed
Probab=99.70 E-value=4.1e-16 Score=159.42 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=89.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccc---c--eec------------CCCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKL---S--IVT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~---~--~~~------------~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~ 176 (363)
+-.+|+|+|++|+|||||+++|+.... . .+. ...++|.+.....+.+.+.+++++||||+.+.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 344899999999999999999974211 1 111 34567777766777778899999999996431
Q ss_pred hhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
...+...+..+|++|+|+|+..+....+..+...+.. .++|+++++||+|+..
T Consensus 89 ---------~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~--~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 89 ---------TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK--YKVPRIAFVNKMDRTG 141 (693)
T ss_pred ---------HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 2235566788999999999998887777777777766 6789999999999864
No 228
>PRK00049 elongation factor Tu; Reviewed
Probab=99.70 E-value=1.2e-15 Score=146.20 Aligned_cols=159 Identities=19% Similarity=0.179 Sum_probs=113.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccc---------------eecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~ 178 (363)
...+|+++|++++|||||+++|++.... ......+.|.+.....+..++.++.++||||+.
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence 4458999999999999999999873110 011256777777666666777899999999952
Q ss_pred hhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEE-EEEcCCCCCChhHHH-----HHHHHHH
Q 017937 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIA-----KKLEWYE 252 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~pii-lV~NK~Dl~~~~~~~-----~~~~~~~ 252 (363)
.+...+...+..+|++++|+|+..+.......+...+.. .+.|.+ +++||+|+.+..+.. +....+.
T Consensus 87 -----~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~ 159 (396)
T PRK00049 87 -----DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred -----HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH--cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence 234455566789999999999998877766666666665 568876 589999998543321 1112222
Q ss_pred hc---CCCCcEEEcccCCCC----------CHHHHHHHHHhhCC
Q 017937 253 KF---TDVDEVIPVSAKYGH----------GVEDIRDWILTKLP 283 (363)
Q Consensus 253 ~~---~~~~~i~~vSAk~g~----------gi~eL~~~i~~~l~ 283 (363)
.. ....+++++||++|. |+..|++.|.+.++
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 21 123689999999975 57889999888765
No 229
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.69 E-value=5.9e-16 Score=135.19 Aligned_cols=115 Identities=25% Similarity=0.335 Sum_probs=74.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
++|+++|++|||||||+++|.+..+.. ..+.++......... ..+..+.+|||||+. .+ ...+..++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~--t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~--~~-------~~~~~~~~ 69 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS--TVTSIEPNVATFILNSEGKGKKFRLVDVPGHP--KL-------RDKLLETL 69 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC--ccCcEeecceEEEeecCCCCceEEEEECCCCH--HH-------HHHHHHHH
Confidence 379999999999999999999876532 222222211111111 345789999999953 22 12234456
Q ss_pred ccc-ceEEEEeeCCCCCc---hHHHHHHHhcc---ccCCCCCEEEEEcCCCCCCh
Q 017937 194 INA-DCIVVLVDACKAPE---RIDEILEEGVG---DHKDKLPILLVLNKKDLIKP 241 (363)
Q Consensus 194 ~~a-d~ii~VvD~~~~~~---~~~~~~~~~~~---~~~~~~piilV~NK~Dl~~~ 241 (363)
+.+ +++|||+|+++... ....++...+. ....+.|+++|+||+|+...
T Consensus 70 ~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 70 KNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred hccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 777 99999999987632 22233333222 11257999999999998643
No 230
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.69 E-value=1.8e-16 Score=125.09 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=112.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
...+.++|..++|||||+|.+....+. ...+.|.......++.+...+.+||.|| +..+.. .+..+.+
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tkgnvtiklwD~gG--q~rfrs-------mWerycR 87 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTKGNVTIKLWDLGG--QPRFRS-------MWERYCR 87 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEeccCceEEEEEecCC--CccHHH-------HHHHHhh
Confidence 347999999999999999988765543 3444555555556667778999999999 555444 4556689
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccC-CCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcccCCC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSAk~g 268 (363)
.+++++||+|+.++. +.....+..++.... .++|+++++||.|+..+-.-......+.. ...-..+|.+||+..
T Consensus 88 ~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~ 167 (186)
T KOG0075|consen 88 GVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEK 167 (186)
T ss_pred cCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCC
Confidence 999999999999854 333445555544322 67999999999999865433333333221 112235799999999
Q ss_pred CCHHHHHHHHHhhCC
Q 017937 269 HGVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (363)
.|++.+.+||.+.-.
T Consensus 168 ~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 168 VNIDITLDWLIEHSK 182 (186)
T ss_pred ccHHHHHHHHHHHhh
Confidence 999999999998653
No 231
>PRK13351 elongation factor G; Reviewed
Probab=99.69 E-value=5.1e-16 Score=159.20 Aligned_cols=116 Identities=24% Similarity=0.291 Sum_probs=82.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce-----------ecC------CCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~ 176 (363)
+..+|+|+|+.|+|||||+++|+...... ..+ ..+.|.......+.+.+..+.+|||||+.+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d- 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID- 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH-
Confidence 44589999999999999999998532110 000 123344433445566789999999999632
Q ss_pred hhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
+...+..+++.+|++++|+|++.+.......+...+.. .++|+++|+||+|+..
T Consensus 86 --------f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 --------FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR--YGIPRLIFINKMDRVG 139 (687)
T ss_pred --------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEECCCCCC
Confidence 22335566889999999999998776555555555554 5799999999999874
No 232
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.69 E-value=7.2e-16 Score=134.06 Aligned_cols=142 Identities=16% Similarity=0.190 Sum_probs=90.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEE--EEEEe-----CCCeeEEEEeCCCCchhhhhhHHHHHHHHH
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICS-----GPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~--~~~~~-----~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 189 (363)
+|+++|.++||||||++++++..+.. ...+....... ...+. ...+.+.+|||+| ++.+..+.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~-~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG--~e~~~~l~------- 71 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG-RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGG--SESVKSTR------- 71 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCC--chhHHHHH-------
Confidence 79999999999999999999987642 11111111111 11121 2346789999999 44544443
Q ss_pred HhhccccceEEEEeeCCCCC--chHHHHHHHhccc-------------------cCCCCCEEEEEcCCCCCChhHHHH--
Q 017937 190 RSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-------------------HKDKLPILLVLNKKDLIKPGEIAK-- 246 (363)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~-------------------~~~~~piilV~NK~Dl~~~~~~~~-- 246 (363)
..+++++|++|+|+|.++.. +.+..|+.+.... ...+.|++||+||+|+.+.+.+..
T Consensus 72 ~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~ 151 (202)
T cd04102 72 AVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNL 151 (202)
T ss_pred HHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHH
Confidence 33488999999999998764 4555665554331 114689999999999975432211
Q ss_pred ---HHHHHHhcCCCCcEEEcccCCCC
Q 017937 247 ---KLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 247 ---~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
....+..+.+. +.+..+++.+.
T Consensus 152 ~~~~~~~ia~~~~~-~~i~~~c~~~~ 176 (202)
T cd04102 152 VLTARGFVAEQGNA-EEINLNCTNGR 176 (202)
T ss_pred HhhHhhhHHHhcCC-ceEEEecCCcc
Confidence 12334444444 56666776543
No 233
>PLN03126 Elongation factor Tu; Provisional
Probab=99.69 E-value=6.2e-16 Score=150.54 Aligned_cols=146 Identities=18% Similarity=0.183 Sum_probs=101.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce---------------ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~ 178 (363)
...+|+++|++++|||||+++|++....+ .....+.|.+.....+..++..+.++||||+.+
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~--- 156 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD--- 156 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH---
Confidence 34589999999999999999998632111 122345566655555667788999999999532
Q ss_pred hhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCC-EEEEEcCCCCCChhHHHH-----HHHHHH
Q 017937 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-----KLEWYE 252 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~-----~~~~~~ 252 (363)
+...+...+..+|++++|+|+..+...+...+...+.. .++| +++++||+|+.+.++..+ ....+.
T Consensus 157 ------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~ 228 (478)
T PLN03126 157 ------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLELVELEVRELLS 228 (478)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHH
Confidence 33445556779999999999998887776666666655 5677 778999999986443222 222222
Q ss_pred hc---CCCCcEEEcccCCCCC
Q 017937 253 KF---TDVDEVIPVSAKYGHG 270 (363)
Q Consensus 253 ~~---~~~~~i~~vSAk~g~g 270 (363)
.. ....+++++||.+|.+
T Consensus 229 ~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 229 SYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred hcCCCcCcceEEEEEcccccc
Confidence 21 1246899999998853
No 234
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.68 E-value=4.8e-16 Score=151.86 Aligned_cols=151 Identities=21% Similarity=0.172 Sum_probs=99.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceec--------------------------------CCCCceEEEEEEEEeCC
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT--------------------------------NKPQTTRHRILGICSGP 161 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~--------------------------------~~~~~t~~~~~~~~~~~ 161 (363)
...+|+++|++++|||||+++|+.....+.. ...+.|.+.....+..+
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 3458999999999999999999865422111 11234455555556677
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCCh
Q 017937 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (363)
Q Consensus 162 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 241 (363)
+.++.||||||+. . +...+...+..+|++++|+|+..+...+.......+... ...|+++|+||+|+...
T Consensus 106 ~~~i~~iDTPGh~--~-------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 106 KRKFIIADTPGHE--Q-------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GIKHLVVAVNKMDLVDY 175 (474)
T ss_pred CcEEEEEECCCcH--H-------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CCCceEEEEEeeccccc
Confidence 8899999999952 2 223344446899999999999887654433333333321 22578999999999742
Q ss_pred --hHHHHHHHHHH----hc--CCCCcEEEcccCCCCCHHHH
Q 017937 242 --GEIAKKLEWYE----KF--TDVDEVIPVSAKYGHGVEDI 274 (363)
Q Consensus 242 --~~~~~~~~~~~----~~--~~~~~i~~vSAk~g~gi~eL 274 (363)
.........+. .. ....+++++||++|.|++++
T Consensus 176 ~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 176 SEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 22333333222 11 12468999999999999864
No 235
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=3.3e-16 Score=145.76 Aligned_cols=199 Identities=22% Similarity=0.248 Sum_probs=134.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccce--------------ecCCCCceEEEEEEE--E---eCCCeeEEEEeCCCCch
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--------------VTNKPQTTRHRILGI--C---SGPEYQMILYDTPGIIE 175 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~--------------~~~~~~~t~~~~~~~--~---~~~~~~i~l~DtpG~~~ 175 (363)
-.+.+|+.+-..|||||..||+...... .....|.|....... + ++..+.++++|||||++
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD 88 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 88 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence 3478999999999999999997543221 223345555433322 2 23558899999999988
Q ss_pred hhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcC
Q 017937 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT 255 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~ 255 (363)
..+.. .+.+..|.++++|+|++.+.+.+.-.-..+. ...+.-++-|+||+||+..+ .+.....+....
T Consensus 89 FsYEV---------SRSLAACEGalLvVDAsQGveAQTlAN~YlA--le~~LeIiPViNKIDLP~Ad-pervk~eIe~~i 156 (603)
T COG0481 89 FSYEV---------SRSLAACEGALLVVDASQGVEAQTLANVYLA--LENNLEIIPVLNKIDLPAAD-PERVKQEIEDII 156 (603)
T ss_pred eEEEe---------hhhHhhCCCcEEEEECccchHHHHHHHHHHH--HHcCcEEEEeeecccCCCCC-HHHHHHHHHHHh
Confidence 76542 2336789999999999998865543222111 22678899999999998543 233333444333
Q ss_pred C--CCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec
Q 017937 256 D--VDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR 333 (363)
Q Consensus 256 ~--~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~ 333 (363)
+ ....+.+|||+|.||+++++.|++.+|+.... .+.|.+.++-+ .++.+..|..+++++..+...
T Consensus 157 Gid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~------~~~pLkALifD-------S~yD~Y~GVv~~vRi~dG~ik 223 (603)
T COG0481 157 GIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGD------PDAPLKALIFD-------SWYDNYLGVVVLVRIFDGTLK 223 (603)
T ss_pred CCCcchheeEecccCCCHHHHHHHHHhhCCCCCCC------CCCcceEEEEe-------ccccccceEEEEEEEeeceec
Confidence 2 23579999999999999999999999864432 12333322111 246778999999999999988
Q ss_pred CCCee
Q 017937 334 PTAKD 338 (363)
Q Consensus 334 ~~~~~ 338 (363)
++.+.
T Consensus 224 ~gdki 228 (603)
T COG0481 224 KGDKI 228 (603)
T ss_pred CCCEE
Confidence 65433
No 236
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.68 E-value=1.6e-15 Score=133.62 Aligned_cols=112 Identities=24% Similarity=0.310 Sum_probs=76.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCC---------------CceEEE--EEEEEe--------CCCeeEEEEeCC
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKP---------------QTTRHR--ILGICS--------GPEYQMILYDTP 171 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~---------------~~t~~~--~~~~~~--------~~~~~i~l~Dtp 171 (363)
+|+++|+.++|||||+++|+........... +.|... ....+. ..+..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6999999999999999999864322111111 112111 111222 236889999999
Q ss_pred CCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC
Q 017937 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (363)
Q Consensus 172 G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 239 (363)
|+.. +...+..+++.+|++++|+|+..+.......+...... .++|+++|+||+|+.
T Consensus 82 G~~~---------f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVD---------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred Cccc---------cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCcc
Confidence 9643 22345566889999999999998876665555555444 568999999999985
No 237
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.68 E-value=4.9e-16 Score=149.47 Aligned_cols=147 Identities=24% Similarity=0.202 Sum_probs=98.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccccee--------------------------------cCCCCceEEEEEEEEeCCCee
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIV--------------------------------TNKPQTTRHRILGICSGPEYQ 164 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~--------------------------------~~~~~~t~~~~~~~~~~~~~~ 164 (363)
+|+++|++++|||||+++|+.....+. ....+.|.+.....+...+.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 799999999999999999975432110 112244566666667777889
Q ss_pred EEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh--
Q 017937 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG-- 242 (363)
Q Consensus 165 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~-- 242 (363)
+.++||||+. . +...+...+..+|++++|+|+..+...+.......+... ...++++|+||+|+....
T Consensus 82 ~~liDtPGh~--~-------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~~~iivviNK~D~~~~~~~ 151 (406)
T TIGR02034 82 FIVADTPGHE--Q-------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GIRHVVLAVNKMDLVDYDEE 151 (406)
T ss_pred EEEEeCCCHH--H-------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CCCcEEEEEEecccccchHH
Confidence 9999999952 2 223344457899999999999988765554444444332 234689999999997522
Q ss_pred HHHHHHHHHH---hcCC--CCcEEEcccCCCCCHHH
Q 017937 243 EIAKKLEWYE---KFTD--VDEVIPVSAKYGHGVED 273 (363)
Q Consensus 243 ~~~~~~~~~~---~~~~--~~~i~~vSAk~g~gi~e 273 (363)
........+. ...+ ..+++++||++|.|+++
T Consensus 152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 2222222221 2122 24799999999999986
No 238
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.66 E-value=8.5e-16 Score=135.36 Aligned_cols=112 Identities=28% Similarity=0.346 Sum_probs=73.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceec------------------CCCCceEEEEEEE--E---eCCCeeEEEEeCCCC
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT------------------NKPQTTRHRILGI--C---SGPEYQMILYDTPGI 173 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~------------------~~~~~t~~~~~~~--~---~~~~~~i~l~DtpG~ 173 (363)
+|+++|++|+|||||+++|+........ ...+.|....... + ......+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6999999999999999999875543210 0011121111111 1 133578999999996
Q ss_pred chhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC
Q 017937 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (363)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 239 (363)
.. + ...+..++..+|++++|+|++++.......+...... .+.|+++|+||+|+.
T Consensus 82 ~~--f-------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VN--F-------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred cc--h-------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccC
Confidence 32 2 1234455789999999999987765544444443333 458999999999985
No 239
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.66 E-value=1.4e-15 Score=132.21 Aligned_cols=159 Identities=19% Similarity=0.136 Sum_probs=100.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccce-ec---CCCCceEEEEEEEEe-CCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-VT---NKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~-~~---~~~~~t~~~~~~~~~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 190 (363)
.+|+++|.+|+|||||+|+|++..... .. ....+|.... .+. .....+.+|||||+.... .. ...+.+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~-~~-~~~~l~~-- 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTA-FP-PDDYLEE-- 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCccc-CC-HHHHHHH--
Confidence 479999999999999999999855321 11 1111222211 111 123478999999974321 11 1122221
Q ss_pred hhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhH-------------HHHHHHHHHhc---
Q 017937 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-------------IAKKLEWYEKF--- 254 (363)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~-------------~~~~~~~~~~~--- 254 (363)
..+..+|++++|.+ .++...+..+.+.++. .+.|+++|+||+|+..+.. +.+..+.+...
T Consensus 76 ~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~--~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 76 MKFSEYDFFIIISS--TRFSSNDVKLAKAIQC--MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred hCccCcCEEEEEeC--CCCCHHHHHHHHHHHH--hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 22568899998854 3456666666666666 4689999999999953211 11222222211
Q ss_pred --CCCCcEEEcccC--CCCCHHHHHHHHHhhCCC
Q 017937 255 --TDVDEVIPVSAK--YGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 255 --~~~~~i~~vSAk--~g~gi~eL~~~i~~~l~~ 284 (363)
....++|.+|+. .+.|+..|.+.|...++.
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 234579999998 689999999999999875
No 240
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=1.8e-15 Score=132.69 Aligned_cols=172 Identities=24% Similarity=0.271 Sum_probs=122.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.+.+|.++|.+|+|||||+|+|.+.+...++..+.++..........++..+++|||||+.+.. .-...+.+.++.++
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~--~~D~~~r~~~~d~l 115 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGK--DKDAEHRQLYRDYL 115 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccch--hhhHHHHHHHHHHh
Confidence 4557889999999999999999987777677666666655555566667889999999986532 12333556677889
Q ss_pred cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh------------HHHH----HHHHHHh-cCC
Q 017937 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG------------EIAK----KLEWYEK-FTD 256 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~------------~~~~----~~~~~~~-~~~ 256 (363)
...|++++++|+.++.-..+..+...+.....+.|+++++|.+|+..+. .+.+ ..+...+ ...
T Consensus 116 ~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~ 195 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE 195 (296)
T ss_pred hhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999887444444443333323558999999999986441 1111 1111111 123
Q ss_pred CCcEEEcccCCCCCHHHHHHHHHhhCCCCCC
Q 017937 257 VDEVIPVSAKYGHGVEDIRDWILTKLPLGPA 287 (363)
Q Consensus 257 ~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~ 287 (363)
..|++.+|+..+.|++.|...++..++....
T Consensus 196 V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 196 VKPVVAVSGRLPWGLKELVRALITALPVEAR 226 (296)
T ss_pred cCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence 4588999999999999999999999985443
No 241
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=7.5e-15 Score=121.13 Aligned_cols=157 Identities=24% Similarity=0.274 Sum_probs=115.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccccee-------cCC--CCceEEEEEEEEeCC-CeeEEEEeCCCCchhhhhhHHH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-------TNK--PQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDS 183 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~-------~~~--~~~t~~~~~~~~~~~-~~~i~l~DtpG~~~~~~~~~~~ 183 (363)
+..+|+++|..++||||++.++.......+ +.. ..+|...-.+.+... +..+.++|||| +.+++-+
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPG--q~RF~fm-- 84 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPG--QERFKFM-- 84 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCC--cHHHHHH--
Confidence 556999999999999999999987663221 111 124444444444444 48999999999 5555443
Q ss_pred HHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCC-CCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEE
Q 017937 184 MMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIP 262 (363)
Q Consensus 184 ~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~-~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~ 262 (363)
+.-+++.++++|+++|++.+.......+...+.. .+ .|++|++||.|+.+....+...+.+....-..++++
T Consensus 85 -----~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~--~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~ 157 (187)
T COG2229 85 -----WEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTS--RNPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIE 157 (187)
T ss_pred -----HHHHhCCcceEEEEEecCCCcchHHHHHHHHHhh--ccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceee
Confidence 3344788999999999998876655566666655 44 999999999999876655555555554433458999
Q ss_pred cccCCCCCHHHHHHHHHhh
Q 017937 263 VSAKYGHGVEDIRDWILTK 281 (363)
Q Consensus 263 vSAk~g~gi~eL~~~i~~~ 281 (363)
++|..++|+.+.++.+...
T Consensus 158 ~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 158 IDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eecccchhHHHHHHHHHhh
Confidence 9999999999999988877
No 242
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.65 E-value=3.9e-15 Score=143.98 Aligned_cols=161 Identities=21% Similarity=0.312 Sum_probs=105.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccce--ecCCCCceEEEEEE---------------------------EEe------
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILG---------------------------ICS------ 159 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~--~~~~~~~t~~~~~~---------------------------~~~------ 159 (363)
..+|+++|+..+|||||+.+|.+..... .....+.|.+.-.. .+.
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKM 113 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccc
Confidence 4489999999999999999999743211 01111222111000 000
Q ss_pred CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCC-CchHHHHHHHhccccCCCCCEEEEEcCCCC
Q 017937 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (363)
Q Consensus 160 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~-~~~~~~~~~~~~~~~~~~~piilV~NK~Dl 238 (363)
.-...+.|+||||+ . .+.+.+...+..+|++++|+|+..+ ...+....+..+... .-.|+|+|+||+|+
T Consensus 114 ~~~~~i~~IDtPGH--~-------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l-gi~~iIVvlNKiDl 183 (460)
T PTZ00327 114 TLKRHVSFVDCPGH--D-------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDL 183 (460)
T ss_pred cccceEeeeeCCCH--H-------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc-CCCcEEEEEecccc
Confidence 00247899999994 2 2445566667899999999999975 344433333333331 23568999999999
Q ss_pred CChhHHHHHHHHHHhc-----CCCCcEEEcccCCCCCHHHHHHHHHhhCCCC
Q 017937 239 IKPGEIAKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (363)
Q Consensus 239 ~~~~~~~~~~~~~~~~-----~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~ 285 (363)
.+.....+..+.+... ....+++++||++|.|++.|++.|.+.++..
T Consensus 184 v~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 184 VKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 8755544433333321 2356899999999999999999999877653
No 243
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.65 E-value=4.2e-17 Score=126.43 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=104.9
Q ss_pred EEcCCCCChHHHHHHHhccccceecCCCCc-eEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 120 i~G~~~~GKSSLln~l~~~~~~~~~~~~~~-t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
++|++++|||.|+-++....|.. .....| ..+.-... .....+++.+|||+| ++.+.++ ...+++++
T Consensus 2 llgds~~gktcllir~kdgafl~-~~fistvgid~rnkli~~~~~kvklqiwdtag--qerfrsv-------t~ayyrda 71 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLA-GNFISTVGIDFRNKLIDMDDKKVKLQIWDTAG--QERFRSV-------THAYYRDA 71 (192)
T ss_pred ccccCccCceEEEEEeccCceec-CceeeeeeeccccceeccCCcEEEEEEeeccc--hHHHhhh-------hHhhhccc
Confidence 68999999999998776554431 111111 11111122 334557899999999 6666554 44568999
Q ss_pred ceEEEEeeCCCC--CchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHH-HHHHHHhcCCCCcEEEcccCCCCCHHH
Q 017937 197 DCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGVED 273 (363)
Q Consensus 197 d~ii~VvD~~~~--~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSAk~g~gi~e 273 (363)
|.+++++|+.+. ++....|+.++.......+.+.+++||+|+...+.+.. .-+.+....+ .|++++||++|.|++-
T Consensus 72 ~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~-ipfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 72 DALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYG-IPFMETSAKTGFNVDL 150 (192)
T ss_pred ceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHC-CCceeccccccccHhH
Confidence 999999999864 36666676665444335678899999999976443321 1122222223 4899999999999999
Q ss_pred HHHHHHhhCCCCC
Q 017937 274 IRDWILTKLPLGP 286 (363)
Q Consensus 274 L~~~i~~~l~~~~ 286 (363)
.|-.|.+.+....
T Consensus 151 af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 151 AFLAIAEELKKLK 163 (192)
T ss_pred HHHHHHHHHHHhc
Confidence 9999988775543
No 244
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.6e-15 Score=117.65 Aligned_cols=155 Identities=22% Similarity=0.254 Sum_probs=107.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCc---eEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT---TRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~---t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
.+-.|+|+-|||||.|+..+...+|- .+-|.+ ....-...+.+...++.+|||+| ++++.. ..+++
T Consensus 12 fkyiiigdmgvgkscllhqftekkfm--adcphtigvefgtriievsgqkiklqiwdtag--qerfra-------vtrsy 80 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG--QERFRA-------VTRSY 80 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHh--hcCCcccceecceeEEEecCcEEEEEEeeccc--HHHHHH-------HHHHH
Confidence 37889999999999999999988774 344433 22222334556678899999999 666544 35667
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
++.+.+.+.|+|++... ..+..|+........++..+++++||.|+...+++. +....+....+ ..++++||++|.
T Consensus 81 yrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeeng-l~fle~saktg~ 159 (215)
T KOG0097|consen 81 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENG-LMFLEASAKTGQ 159 (215)
T ss_pred hccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcC-eEEEEecccccC
Confidence 89999999999998754 334455544333223667799999999998665442 11223333333 368999999999
Q ss_pred CHHHHHHHHHhhC
Q 017937 270 GVEDIRDWILTKL 282 (363)
Q Consensus 270 gi~eL~~~i~~~l 282 (363)
|+++.|-.-.+.+
T Consensus 160 nvedafle~akki 172 (215)
T KOG0097|consen 160 NVEDAFLETAKKI 172 (215)
T ss_pred cHHHHHHHHHHHH
Confidence 9999876555544
No 245
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.65 E-value=2.7e-15 Score=152.22 Aligned_cols=149 Identities=23% Similarity=0.207 Sum_probs=98.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceec----------CCC----------------------CceEEEEEEEEeCCC
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVT----------NKP----------------------QTTRHRILGICSGPE 162 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~----------~~~----------------------~~t~~~~~~~~~~~~ 162 (363)
..+|+++|++|+|||||+++|+.....+.. ... +.|.+.....+..++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 348999999999999999999875533221 122 334444455566777
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC--
Q 017937 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK-- 240 (363)
Q Consensus 163 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~-- 240 (363)
.++.|+||||+. . +...+...+..+|++++|+|+..+...........+... ...|+++|+||+|+.+
T Consensus 104 ~~~~liDtPG~~--~-------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~~iivvvNK~D~~~~~ 173 (632)
T PRK05506 104 RKFIVADTPGHE--Q-------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIRHVVLAVNKMDLVDYD 173 (632)
T ss_pred ceEEEEECCChH--H-------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCCeEEEEEEecccccch
Confidence 899999999952 2 222333457899999999999887654433333333331 2367899999999974
Q ss_pred hhHHHHHHHHHH---hcCC--CCcEEEcccCCCCCHHH
Q 017937 241 PGEIAKKLEWYE---KFTD--VDEVIPVSAKYGHGVED 273 (363)
Q Consensus 241 ~~~~~~~~~~~~---~~~~--~~~i~~vSAk~g~gi~e 273 (363)
..........+. ...+ ..+++++||++|.|+++
T Consensus 174 ~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 174 QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 222232222222 1222 24699999999999974
No 246
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.64 E-value=8e-15 Score=129.54 Aligned_cols=160 Identities=24% Similarity=0.255 Sum_probs=103.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
.+|+++|++|||||||+++|.+..+.................... ....+.+|||+| +..+..+ +..++.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~g--q~~~~~~-------~~~y~~ 76 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG--QEEYRSL-------RPEYYR 76 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCC--HHHHHHH-------HHHHhc
Confidence 589999999999999999999988763222111222222222221 257799999999 4444433 445578
Q ss_pred ccceEEEEeeCCCCC--chHHHHHHHhccccC-CCCCEEEEEcCCCCCChhHHHHH--------------HHHHHhc-CC
Q 017937 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKK--------------LEWYEKF-TD 256 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~-~~~piilV~NK~Dl~~~~~~~~~--------------~~~~~~~-~~ 256 (363)
.++++++|+|.+... ......+...+.... ...|+++|+||+|+......... ....... ..
T Consensus 77 ~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (219)
T COG1100 77 GANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVA 156 (219)
T ss_pred CCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhc
Confidence 999999999998632 333333333333322 36899999999999865321110 0000001 11
Q ss_pred CCcEEEcccC--CCCCHHHHHHHHHhhCCC
Q 017937 257 VDEVIPVSAK--YGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 257 ~~~i~~vSAk--~g~gi~eL~~~i~~~l~~ 284 (363)
...++++||+ ++.|+.+++..+...+..
T Consensus 157 ~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 157 NPALLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred ccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 2238999999 999999999999887753
No 247
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=3.1e-16 Score=125.27 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=103.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCce---EEEEEEEEe---------CCCeeEEEEeCCCCchhhhhhHHHH
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT---RHRILGICS---------GPEYQMILYDTPGIIEKKIHMLDSM 184 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t---~~~~~~~~~---------~~~~~i~l~DtpG~~~~~~~~~~~~ 184 (363)
+...+|++||||||++.++...+|.. ....|. .......+. .....+.+|||+| ++.+.++...
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~--qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG--QERFRSLTTA 86 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNT--QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG--QERFRSLTTA 86 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccc--eeEEEeecccccceEEEeccCCCCCCcceEEEEeeecccc--HHHHHHHHHH
Confidence 56778999999999999998877641 111110 000111111 1124678999999 7777776554
Q ss_pred HHHHHHhhccccceEEEEeeCCCCC--chHHHHHHHhccc-cCCCCCEEEEEcCCCCCChhHHHHH-HHHHHhcCCCCcE
Q 017937 185 MMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEV 260 (363)
Q Consensus 185 ~~~~~~~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~i 260 (363)
+ +++|-++++++|.++.. -....|+.++... +..+.-+++++||+|+.+.+.+.+. ...+....+. ||
T Consensus 87 F-------fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl-PY 158 (219)
T KOG0081|consen 87 F-------FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGL-PY 158 (219)
T ss_pred H-------HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCC-Ce
Confidence 4 78889999999998643 3445555543222 2367789999999999877665432 2334444444 99
Q ss_pred EEcccCCCCCHHHHHHHHHhhCC
Q 017937 261 IPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 261 ~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
|++||-+|.||++..+.|...+.
T Consensus 159 fETSA~tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 159 FETSACTGTNVEKAVELLLDLVM 181 (219)
T ss_pred eeeccccCcCHHHHHHHHHHHHH
Confidence 99999999999987777766553
No 248
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.64 E-value=4.3e-15 Score=137.59 Aligned_cols=184 Identities=21% Similarity=0.269 Sum_probs=118.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc------cccceecCCCCceE-------------------E-EEEE-----------
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTTR-------------------H-RILG----------- 156 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~------~~~~~~~~~~~~t~-------------------~-~~~~----------- 156 (363)
+...|+|.|.||+|||||+++|.. .++..+...|.... . .+..
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a 134 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVA 134 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchH
Confidence 445899999999999999998642 22222222221110 0 0110
Q ss_pred --------EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHH-hccccCCCC
Q 017937 157 --------ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE-GVGDHKDKL 227 (363)
Q Consensus 157 --------~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~-~~~~~~~~~ 227 (363)
.+...++.+.++||+|..+.... ....||++++|++...+.. + ..+.. .+ ..
T Consensus 135 ~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~------------i~~~aD~vlvv~~p~~gd~-i-q~~k~gi~-----E~ 195 (332)
T PRK09435 135 RKTRETMLLCEAAGYDVILVETVGVGQSETA------------VAGMVDFFLLLQLPGAGDE-L-QGIKKGIM-----EL 195 (332)
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCccchhH------------HHHhCCEEEEEecCCchHH-H-HHHHhhhh-----hh
Confidence 01233578999999997543211 1457999999987433321 1 11111 11 22
Q ss_pred CEEEEEcCCCCCChhHHHHHHHHHHhc----C-----CCCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCC--
Q 017937 228 PILLVLNKKDLIKPGEIAKKLEWYEKF----T-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSE-- 296 (363)
Q Consensus 228 piilV~NK~Dl~~~~~~~~~~~~~~~~----~-----~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~-- 296 (363)
.-++|+||+|+............+... . ...+++.+||++|.|+++|++.|.+.++ +.++.+..++
T Consensus 196 aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~---~l~~sg~l~~~r 272 (332)
T PRK09435 196 ADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA---ALTASGEFAARR 272 (332)
T ss_pred hheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhccCChHHHHH
Confidence 348999999998644332222222211 1 1258999999999999999999999876 6778888877
Q ss_pred -chHHHHHHHHHHHHHHhhccCCC
Q 017937 297 -HPERFFVGEIIREKIFMQYRNEV 319 (363)
Q Consensus 297 -~~~~~~~~eiire~i~~~~~~ev 319 (363)
++.++++.+++|++++..++...
T Consensus 273 ~~~~~~~v~elire~l~~~~~~~~ 296 (332)
T PRK09435 273 REQQVDWMWEMVEEGLLDRLFADP 296 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCc
Confidence 77888999999999999886544
No 249
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.64 E-value=5.9e-15 Score=143.20 Aligned_cols=149 Identities=18% Similarity=0.176 Sum_probs=100.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccc------------------------------eecCCCCceEEEEEEEEeCCCe
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS------------------------------IVTNKPQTTRHRILGICSGPEY 163 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~ 163 (363)
...+|+++|+.++|||||+.+|+..... ......+.|.+.....+.+++.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 3458999999999999999998752110 0112335566665666777889
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC-------chHHHHHHHhccccCCCCC-EEEEEcC
Q 017937 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLP-ILLVLNK 235 (363)
Q Consensus 164 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-------~~~~~~~~~~~~~~~~~~p-iilV~NK 235 (363)
.++|+||||+. . +...+...+..+|++++|+|+..+. ..+....+.++.. .++| +|+++||
T Consensus 86 ~i~lIDtPGh~--~-------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNK 154 (446)
T PTZ00141 86 YFTIIDAPGHR--D-------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINK 154 (446)
T ss_pred EEEEEECCChH--H-------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEc
Confidence 99999999953 2 3445566678999999999998764 2444555555544 5666 6789999
Q ss_pred CCCCC----hhHHHHHHHHHH----hcC---CCCcEEEcccCCCCCHHH
Q 017937 236 KDLIK----PGEIAKKLEWYE----KFT---DVDEVIPVSAKYGHGVED 273 (363)
Q Consensus 236 ~Dl~~----~~~~~~~~~~~~----~~~---~~~~i~~vSAk~g~gi~e 273 (363)
+|+.. .....+....+. ... ...+++++||.+|.|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 155 MDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 99532 222333222222 211 136899999999999964
No 250
>PLN00023 GTP-binding protein; Provisional
Probab=99.64 E-value=5e-15 Score=135.30 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=81.1
Q ss_pred CCCCCCcEEEEEcCCCCChHHHHHHHhcccccee-cCCCCceEEEEEEEEe-------------CCCeeEEEEeCCCCch
Q 017937 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICS-------------GPEYQMILYDTPGIIE 175 (363)
Q Consensus 110 ~~~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~-------------~~~~~i~l~DtpG~~~ 175 (363)
.|+....||+++|..|||||||+++|++..+... ..+.+.+.......+. ...+.+.||||+| +
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG--q 93 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG--H 93 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCC--C
Confidence 3455667999999999999999999998876421 1122222211111121 1246799999999 5
Q ss_pred hhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC--chHHHHHHHhcccc------------CCCCCEEEEEcCCCCCCh
Q 017937 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH------------KDKLPILLVLNKKDLIKP 241 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~------------~~~~piilV~NK~Dl~~~ 241 (363)
+.+..+ +..+++++|++|+|+|+++.. ..+..|+..+.... ..++|++||+||+||...
T Consensus 94 ErfrsL-------~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 94 ERYKDC-------RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhh-------hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 555444 334589999999999998753 44455554443321 025899999999999654
No 251
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=7.1e-15 Score=115.16 Aligned_cols=158 Identities=20% Similarity=0.184 Sum_probs=111.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|..++||||++..|.-.....+.+ |.......+.+.+..+++||..| ++.. ...|++|+
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ip----TvGFnvetVtykN~kfNvwdvGG--qd~i-------RplWrhYy 82 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIP----TVGFNVETVTYKNVKFNVWDVGG--QDKI-------RPLWRHYY 82 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCccccc----ccceeEEEEEeeeeEEeeeeccC--chhh-------hHHHHhhc
Confidence 45589999999999999999998765432222 22233445566778999999999 4432 23477889
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHH---hcCCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~i~~vSAk~ 267 (363)
....++|||+|+.++. +.....+...+... -...|+++..||.|+.......++.+.+. .....+-+.++||.+
T Consensus 83 ~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~ 162 (180)
T KOG0071|consen 83 TGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALS 162 (180)
T ss_pred cCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccccc
Confidence 9999999999998763 33344444444332 15689999999999986554444433332 222345689999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 017937 268 GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (363)
|.|+.+-+.||...+..
T Consensus 163 gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 163 GDGLKEGLSWLSNNLKE 179 (180)
T ss_pred chhHHHHHHHHHhhccC
Confidence 99999999999987653
No 252
>PTZ00099 rab6; Provisional
Probab=99.63 E-value=2.5e-15 Score=128.12 Aligned_cols=118 Identities=21% Similarity=0.227 Sum_probs=82.6
Q ss_pred EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCC--CchHHHHHHHhccccCCCCCEEEEEcC
Q 017937 158 CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNK 235 (363)
Q Consensus 158 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~--~~~~~~~~~~~~~~~~~~~piilV~NK 235 (363)
+.....++.+|||||. ..+..+ +..+++.||++|+|+|++++ ++....|+....+......|++||+||
T Consensus 24 ~~~~~v~l~iwDt~G~--e~~~~~-------~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 24 LDEGPVRLQLWDTAGQ--ERFRSL-------IPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred ECCEEEEEEEEECCCh--HHhhhc-------cHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 3445578999999994 444433 33447899999999999875 355556666555443356899999999
Q ss_pred CCCCChhH--HHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhCCCCC
Q 017937 236 KDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (363)
Q Consensus 236 ~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~ 286 (363)
+|+..... ..+....... .+ ..++++||++|.||+++|++|.+.+++.+
T Consensus 95 ~DL~~~~~v~~~e~~~~~~~-~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 95 TDLGDLRKVTYEEGMQKAQE-YN-TMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cccccccCCCHHHHHHHHHH-cC-CEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 99964321 1222222222 22 36899999999999999999999987644
No 253
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.63 E-value=5.6e-16 Score=131.25 Aligned_cols=162 Identities=19% Similarity=0.195 Sum_probs=112.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EE-eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--IC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 190 (363)
+..++++||+.++|||+|+..+..+.|. ..+..|-.+.... .+ +...+.+.+|||+| ++.++.++..
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp--~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAG--qedYDrlRpl------ 72 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFP--EEYVPTVFDNYSANVTVDDGKPVELGLWDTAG--QEDYDRLRPL------ 72 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCc--ccccCeEEccceEEEEecCCCEEEEeeeecCC--Cccccccccc------
Confidence 4568999999999999999988877665 3333333333322 23 25557789999999 5555544321
Q ss_pred hhccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-H------------HHHHHHHhcC
Q 017937 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-A------------KKLEWYEKFT 255 (363)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-~------------~~~~~~~~~~ 255 (363)
.+.++|+++++++..++. .+....|...++....+.|+|+|++|.||.+.... . +....+.+..
T Consensus 73 -sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~i 151 (198)
T KOG0393|consen 73 -SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEI 151 (198)
T ss_pred -CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHh
Confidence 478999999999988765 33333344444555588999999999999843211 1 1123344455
Q ss_pred CCCcEEEcccCCCCCHHHHHHHHHhhCCCCC
Q 017937 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (363)
Q Consensus 256 ~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~ 286 (363)
+...+++|||++..|+.++|+.........+
T Consensus 152 ga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 152 GAVKYLECSALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred CcceeeeehhhhhCCcHHHHHHHHHHHhccc
Confidence 6678999999999999999998887765443
No 254
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.2e-15 Score=122.51 Aligned_cols=161 Identities=24% Similarity=0.295 Sum_probs=110.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccc----eecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLS----IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
..|+|+|..|+|||||+.++-..... .......+|.....+.....+..+.+||..| +...+++ +..
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgG--Qe~lrSl-------w~~ 88 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGG--QESLRSL-------WKK 88 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCC--hHHHHHH-------HHH
Confidence 36999999999999999987543211 1112333444455556666678999999999 4443333 556
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccc-cCCCCCEEEEEcCCCCCChhHHHHHHHHHH--hc--CCCCcEEEcc
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYE--KF--TDVDEVIPVS 264 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~~~~~~~~~~~~~--~~--~~~~~i~~vS 264 (363)
++..|++++||||++++. +.....+...... ...+.|+++.+||.|+.+..+..++...+. .. ....++.+||
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvS 168 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVS 168 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccch
Confidence 688999999999999854 2111222222111 116899999999999987665555443333 11 1345789999
Q ss_pred cCCCCCHHHHHHHHHhhCCCC
Q 017937 265 AKYGHGVEDIRDWILTKLPLG 285 (363)
Q Consensus 265 Ak~g~gi~eL~~~i~~~l~~~ 285 (363)
|.+|+||++-..|+...++..
T Consensus 169 al~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 169 ALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhcccHHHHHHHHHHHHhhc
Confidence 999999999999999998765
No 255
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.61 E-value=2.4e-15 Score=119.78 Aligned_cols=111 Identities=22% Similarity=0.337 Sum_probs=69.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccccc---eecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLS---IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
||+++|.+|||||||+++|++..+. ......+.+..............+.+||++|. ..+..... ..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~--~~~~~~~~-------~~~ 71 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQ--EEFYSQHQ-------FFL 71 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSS--HCHHCTSH-------HHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcc--ceeccccc-------chh
Confidence 6999999999999999999988765 12233333433333344444456899999995 32222211 126
Q ss_pred cccceEEEEeeCCCCC--chHH---HHHHHhccccCCCCCEEEEEcCCC
Q 017937 194 INADCIVVLVDACKAP--ERID---EILEEGVGDHKDKLPILLVLNKKD 237 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~---~~~~~~~~~~~~~~piilV~NK~D 237 (363)
..+|++++|+|++++. .... .++... +....+.|+++|+||.|
T Consensus 72 ~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~-~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 72 KKADAVILVYDLSDPESLEYLSQLLKWLKNI-RKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHSCEEEEEEECCGHHHHHHHHHHHHHHHHH-HHHSSCSEEEEEEE-TC
T ss_pred hcCcEEEEEEcCCChHHHHHHHHHHHHHHHH-HccCCCCCEEEEEeccC
Confidence 7899999999998754 2221 122222 22225699999999998
No 256
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.60 E-value=1.6e-15 Score=141.93 Aligned_cols=167 Identities=21% Similarity=0.230 Sum_probs=119.8
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 112 ~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+...+.++++|.||||||||+|.+...... +.+++.||+..+.+.++..-..+.++||||+.+......+...+..+..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradve-vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDE-VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccc-cCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 445568999999999999999999887765 6889999999999988888788999999999876655444444444333
Q ss_pred hccccceEEEEeeCCCCCch---HHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHH----HHHHHHhcCCCCcEEEcc
Q 017937 192 AGINADCIVVLVDACKAPER---IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK----KLEWYEKFTDVDEVIPVS 264 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~---~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~----~~~~~~~~~~~~~i~~vS 264 (363)
...--.+|+|++|.+..... ..-.+...++....++|+|+|+||+|+..++.+.+ ..+.+.... ..+++.+|
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~-~v~v~~tS 322 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDG-NVKVVQTS 322 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhcc-CceEEEec
Confidence 33444579999999865411 11123333344447899999999999987655433 334444333 35899999
Q ss_pred cCCCCCHHHHHHHHHh
Q 017937 265 AKYGHGVEDIRDWILT 280 (363)
Q Consensus 265 Ak~g~gi~eL~~~i~~ 280 (363)
+.+.+||-++....++
T Consensus 323 ~~~eegVm~Vrt~ACe 338 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACE 338 (620)
T ss_pred ccchhceeeHHHHHHH
Confidence 9999999876654443
No 257
>PRK12740 elongation factor G; Reviewed
Probab=99.59 E-value=5.1e-14 Score=144.23 Aligned_cols=109 Identities=23% Similarity=0.239 Sum_probs=77.6
Q ss_pred EcCCCCChHHHHHHHhcccccee-----------c------CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHH
Q 017937 121 LGKPNVGKSTLANQMIGQKLSIV-----------T------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDS 183 (363)
Q Consensus 121 ~G~~~~GKSSLln~l~~~~~~~~-----------~------~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~ 183 (363)
+|++|+|||||+++|+.....+. . ...+.|.......+.+.+..+++|||||+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence 59999999999999965432211 1 1234455555556667889999999999632
Q ss_pred HHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 184 MMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 184 ~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
+...+..++..+|++++|+|++.+.......+...+.. .+.|+++|+||+|+..
T Consensus 73 -~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 73 -FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEK--YGVPRIIFVNKMDRAG 126 (668)
T ss_pred -HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 12334556789999999999998776655555555544 5789999999999863
No 258
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.59 E-value=1.4e-14 Score=140.45 Aligned_cols=148 Identities=20% Similarity=0.243 Sum_probs=96.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccc------------------------------eecCCCCceEEEEEEEEeCCCee
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLS------------------------------IVTNKPQTTRHRILGICSGPEYQ 164 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~~ 164 (363)
..+|+++|+.++|||||+-+|+..... ......+.|.+.....+...+..
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~ 86 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYY 86 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEE
Confidence 447999999999999999998742110 01112345555555556778889
Q ss_pred EEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC-c------hHHHHHHHhccccCCCC-CEEEEEcCC
Q 017937 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-E------RIDEILEEGVGDHKDKL-PILLVLNKK 236 (363)
Q Consensus 165 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-~------~~~~~~~~~~~~~~~~~-piilV~NK~ 236 (363)
++++||||+ .. |...+...+..+|++|+|+|+..+. + .+......++.. .++ ++|+++||+
T Consensus 87 i~liDtPGh--~d-------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKm 155 (447)
T PLN00043 87 CTVIDAPGH--RD-------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT--LGVKQMICCCNKM 155 (447)
T ss_pred EEEEECCCH--HH-------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH--cCCCcEEEEEEcc
Confidence 999999995 22 3455666688999999999998752 1 233333333333 456 578899999
Q ss_pred CCCCh----hHH----HHHHHHHHhcC---CCCcEEEcccCCCCCHHH
Q 017937 237 DLIKP----GEI----AKKLEWYEKFT---DVDEVIPVSAKYGHGVED 273 (363)
Q Consensus 237 Dl~~~----~~~----~~~~~~~~~~~---~~~~i~~vSAk~g~gi~e 273 (363)
|+... ... .+....+.... ...+++++||++|.|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 156 DATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 98621 112 22222232221 135799999999999853
No 259
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.57 E-value=2.2e-13 Score=126.73 Aligned_cols=158 Identities=19% Similarity=0.237 Sum_probs=114.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccccce---------------ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhH
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~ 181 (363)
+|+|+.+...|||||+..|+...... .....|.|.-....-+.+++..++++||||+.+..
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG---- 82 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG---- 82 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc----
Confidence 79999999999999999998654221 12233455555555577889999999999975432
Q ss_pred HHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhH---HHHHHHHHHh-----
Q 017937 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEK----- 253 (363)
Q Consensus 182 ~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~~~~~----- 253 (363)
..+.+.++-.|.+++++|+..++..+..++....-. .+.+-|+|+||+|....+. +.+..+.+..
T Consensus 83 -----GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~--~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~d 155 (603)
T COG1217 83 -----GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA--LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATD 155 (603)
T ss_pred -----chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH--cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCCh
Confidence 123344778999999999999998888876654433 5677799999999986432 3333333332
Q ss_pred -cCCCCcEEEcccCCC----------CCHHHHHHHHHhhCCCCC
Q 017937 254 -FTDVDEVIPVSAKYG----------HGVEDIRDWILTKLPLGP 286 (363)
Q Consensus 254 -~~~~~~i~~vSAk~g----------~gi~eL~~~i~~~l~~~~ 286 (363)
+..+ |++..||+.| .++..||+.|.+.++...
T Consensus 156 eQLdF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 156 EQLDF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred hhCCC-cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 2333 8999999987 368889999999998644
No 260
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.57 E-value=1.6e-14 Score=113.36 Aligned_cols=162 Identities=20% Similarity=0.264 Sum_probs=114.1
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 017937 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (363)
Q Consensus 111 ~~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 190 (363)
+..+..+|.++|..|+|||||+..|.+.....+.++.|...... -..+.+.+++||..|. .... ..|.
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v---~~~g~f~LnvwDiGGq--r~IR-------pyWs 80 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKV---EYDGTFHLNVWDIGGQ--RGIR-------PYWS 80 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEE---eecCcEEEEEEecCCc--cccc-------hhhh
Confidence 44577799999999999999999999988765555555433222 2233489999999994 3322 2366
Q ss_pred hhccccceEEEEeeCCCCC--chHHHHHHHhccccC-CCCCEEEEEcCCCCCChhHHHHHHHHHH---hcCCCCcEEEcc
Q 017937 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVS 264 (363)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~i~~vS 264 (363)
.|+.+.|.+|||+|+++.. +.....+.+++.... ...|+++..||.|++.....++....+. -....+.+-+||
T Consensus 81 NYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~cs 160 (185)
T KOG0074|consen 81 NYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECS 160 (185)
T ss_pred hhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCc
Confidence 7799999999999977542 444444555544322 5789999999999976544433322211 112345789999
Q ss_pred cCCCCCHHHHHHHHHhhCCC
Q 017937 265 AKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 265 Ak~g~gi~eL~~~i~~~l~~ 284 (363)
|.+++|+.+-.+|+......
T Consensus 161 als~eg~~dg~~wv~sn~~~ 180 (185)
T KOG0074|consen 161 ALSLEGSTDGSDWVQSNPET 180 (185)
T ss_pred cccccCccCcchhhhcCCCC
Confidence 99999999999999877654
No 261
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1e-13 Score=128.12 Aligned_cols=200 Identities=19% Similarity=0.168 Sum_probs=124.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccc------------------------cee------cCCCCceEEEEEEEEeCCCee
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKL------------------------SIV------TNKPQTTRHRILGICSGPEYQ 164 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~------------------------~~~------~~~~~~t~~~~~~~~~~~~~~ 164 (363)
..+++++|++++|||||+-+|+..-. +-+ ....|.|.+.....+..+.+.
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~ 86 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYN 86 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCce
Confidence 34899999999999999999863221 111 123355666666667777889
Q ss_pred EEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCC-------CchHHHHHHHhccccCCCCCEEEEEcCCC
Q 017937 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKKD 237 (363)
Q Consensus 165 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~-------~~~~~~~~~~~~~~~~~~~piilV~NK~D 237 (363)
++++|+||+.+ +...+.....+||+.|+|+|+..+ ...+.....-+.+.+ .-..+|+++||+|
T Consensus 87 ~tIiDaPGHrd---------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD 156 (428)
T COG5256 87 FTIIDAPGHRD---------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMD 156 (428)
T ss_pred EEEeeCCchHH---------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEccc
Confidence 99999999532 345566667899999999999987 344444444444432 2356899999999
Q ss_pred CCCh--hHHHHHHHH---HHhcCC----CCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCC------------CCCCCC
Q 017937 238 LIKP--GEIAKKLEW---YEKFTD----VDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYP------------KDIVSE 296 (363)
Q Consensus 238 l~~~--~~~~~~~~~---~~~~~~----~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~------------~~~~~~ 296 (363)
+.+- +...+.... +.+..+ ..++++|||.+|.|+.+.- ...||+.- +..-.+
T Consensus 157 ~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s-------~~~pWY~GpTLleaLd~~~~p~~~~d 229 (428)
T COG5256 157 LVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS-------ENMPWYKGPTLLEALDQLEPPERPLD 229 (428)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC-------cCCcCccCChHHHHHhccCCCCCCCC
Confidence 9853 222222222 222222 2479999999999986632 12223211 111134
Q ss_pred chHHHHHHHHHHHHHHhhcc-CCCCCceEEEEEEEEecCCCeeE
Q 017937 297 HPERFFVGEIIREKIFMQYR-NEVPYACQVNVVSYKTRPTAKDF 339 (363)
Q Consensus 297 ~~~~~~~~eiire~i~~~~~-~evp~s~~i~~~~~~~~~~~~~~ 339 (363)
.|.|.-+. ..+. ..+++...-.++.+...++..+.
T Consensus 230 ~Plr~pI~--------~v~~i~~~gtv~vGrVEsG~i~~g~~v~ 265 (428)
T COG5256 230 KPLRLPIQ--------DVYSISGIGTVPVGRVESGVIKPGQKVT 265 (428)
T ss_pred CCeEeEee--------eEEEecCCceEEEEEEeeeeeccCCEEE
Confidence 44443332 2333 56777666677777777654443
No 262
>PTZ00258 GTP-binding protein; Provisional
Probab=99.53 E-value=1.9e-13 Score=128.93 Aligned_cols=90 Identities=24% Similarity=0.216 Sum_probs=70.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC-----------------CeeEEEEeCCCCchh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-----------------EYQMILYDTPGIIEK 176 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~i~l~DtpG~~~~ 176 (363)
...+|+|+|.||||||||+|+|.+... .++++|++|+++..+.+... ..++.++||||+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 455899999999999999999988775 57899999999888876654 235899999998643
Q ss_pred hhhhHHHHHHHHHHhhccccceEEEEeeCC
Q 017937 177 KIHMLDSMMMKNVRSAGINADCIVVLVDAC 206 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~ 206 (363)
... ...+...+...++.+|++++|+|+.
T Consensus 99 a~~--g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASE--GEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred Ccc--hhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 322 1223344556688999999999984
No 263
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.53 E-value=2.7e-13 Score=107.95 Aligned_cols=162 Identities=22% Similarity=0.250 Sum_probs=109.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeC---CCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 190 (363)
+.++|+++|..+||||+++..|+..+...-+....|-.+.+...+.. ..-++.+.||.|+... ... .-+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~-~~e-------Lpr 79 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG-QQE-------LPR 79 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCc-hhh-------hhH
Confidence 56799999999999999999988666543334444444444444432 2347899999998443 222 244
Q ss_pred hhccccceEEEEeeCCCCCchH-HHHHHHhcccc--CCCCCEEEEEcCCCCCChhHHHHH-HHHHHhcCCCCcEEEcccC
Q 017937 191 SAGINADCIVVLVDACKAPERI-DEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAK 266 (363)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~~~~-~~~~~~~~~~~--~~~~piilV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~i~~vSAk 266 (363)
.|+.-+|++++|++..++..-. .+.+...+... ...+|+++++||+|+.++.++... ...+.+ ......++++|.
T Consensus 80 hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~-rEkvkl~eVta~ 158 (198)
T KOG3883|consen 80 HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAK-REKVKLWEVTAM 158 (198)
T ss_pred hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHh-hhheeEEEEEec
Confidence 5688999999999998764211 11222222221 256899999999999766554322 222222 233478999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 017937 267 YGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (363)
....+-+.|.++...+..
T Consensus 159 dR~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 159 DRPSLYEPFTYLASRLHQ 176 (198)
T ss_pred cchhhhhHHHHHHHhccC
Confidence 999999999999998864
No 264
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.52 E-value=3.9e-13 Score=119.18 Aligned_cols=136 Identities=21% Similarity=0.248 Sum_probs=90.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccc-ceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
..|+++|.+|+|||||+|+|.+... ..+....++ + ......+.++.++||||.. ..+...+.
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i-~i~~~~~~~i~~vDtPg~~------------~~~l~~ak 102 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----I-TVVTGKKRRLTFIECPNDI------------NAMIDIAK 102 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----E-EEEecCCceEEEEeCCchH------------HHHHHHHH
Confidence 4799999999999999999987521 112222222 1 1233457889999999942 11223357
Q ss_pred ccceEEEEeeCCCCCchHHHHHHHhccccCCCCCE-EEEEcCCCCCChh-HHHHHHHH----H-HhcCCCCcEEEcccCC
Q 017937 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLIKPG-EIAKKLEW----Y-EKFTDVDEVIPVSAKY 267 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~pi-ilV~NK~Dl~~~~-~~~~~~~~----~-~~~~~~~~i~~vSAk~ 267 (363)
.+|++++|+|++.+.......+...+.. .+.|. ++|+||+|+.... ........ + .......+++++||++
T Consensus 103 ~aDvVllviDa~~~~~~~~~~i~~~l~~--~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~ 180 (225)
T cd01882 103 VADLVLLLIDASFGFEMETFEFLNILQV--HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIV 180 (225)
T ss_pred hcCEEEEEEecCcCCCHHHHHHHHHHHH--cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeecc
Confidence 8999999999988776666666666655 45775 4599999997432 22222221 1 2234567999999998
Q ss_pred CCC
Q 017937 268 GHG 270 (363)
Q Consensus 268 g~g 270 (363)
+-.
T Consensus 181 ~~~ 183 (225)
T cd01882 181 HGR 183 (225)
T ss_pred CCC
Confidence 743
No 265
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.52 E-value=1.4e-12 Score=136.11 Aligned_cols=145 Identities=22% Similarity=0.241 Sum_probs=96.6
Q ss_pred CChHHHHHHHhccccceecCCCCceEEEEEEEEeCC------------------CeeEEEEeCCCCchhhhhhHHHHHHH
Q 017937 126 VGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP------------------EYQMILYDTPGIIEKKIHMLDSMMMK 187 (363)
Q Consensus 126 ~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------------~~~i~l~DtpG~~~~~~~~~~~~~~~ 187 (363)
++||||+.+|.+.+.+ .....|.|++.-...+... -..+.||||||+ ..+..+.
T Consensus 472 ~~KTtLLD~iR~t~v~-~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGh--e~F~~lr----- 543 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVA-KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGH--EAFTSLR----- 543 (1049)
T ss_pred cccccHHHHHhCCCcc-cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCc--HHHHHHH-----
Confidence 3599999999998875 2444455655433222211 124899999994 4444332
Q ss_pred HHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhH------------------HHHH--
Q 017937 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------------IAKK-- 247 (363)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~------------------~~~~-- 247 (363)
...+..+|++++|+|++++...........++. .++|+++|+||+|+..... ..+.
T Consensus 544 --~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~--~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~ 619 (1049)
T PRK14845 544 --KRGGSLADLAVLVVDINEGFKPQTIEAINILRQ--YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEI 619 (1049)
T ss_pred --HhhcccCCEEEEEEECcccCCHhHHHHHHHHHH--cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHH
Confidence 223678999999999998776666655555555 5789999999999963211 0111
Q ss_pred -----HHHH-------------HhcCCCCcEEEcccCCCCCHHHHHHHHHhhC
Q 017937 248 -----LEWY-------------EKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 248 -----~~~~-------------~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
...+ ..+.+..+++++||++|+|+++|+.+|....
T Consensus 620 ~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 620 KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 0001 1223456899999999999999999887544
No 266
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=4.5e-14 Score=111.22 Aligned_cols=158 Identities=16% Similarity=0.199 Sum_probs=106.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|.++|.-|+|||+++.++.-.+....-+.++.. ...+..++.++.+||..|. .+. ...|+.|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfn----ve~v~yKNLk~~vwdLggq--tSi-------rPyWRcYy 83 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFN----VETVPYKNLKFQVWDLGGQ--TSI-------RPYWRCYY 83 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcC----ccccccccccceeeEccCc--ccc-------cHHHHHHh
Confidence 5568999999999999999888765543222222222 2334457789999999994 332 23467779
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccccC-CCCCEEEEEcCCCCCChhHHHH---HHHHHHhcCCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAK---KLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~-~~~piilV~NK~Dl~~~~~~~~---~~~~~~~~~~~~~i~~vSAk~ 267 (363)
.+.|.+|||+|.++.. ......+...++... .+..+++++||.|....-...+ .....+.....+.+|.+||.+
T Consensus 84 ~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~k 163 (182)
T KOG0072|consen 84 ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVK 163 (182)
T ss_pred cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeecccc
Confidence 9999999999998765 222233333333321 4577889999999864432222 222222222346899999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 017937 268 GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (363)
|+|++..++||.+-+..
T Consensus 164 g~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 164 GEGLDPAMDWLQRPLKS 180 (182)
T ss_pred ccCCcHHHHHHHHHHhc
Confidence 99999999999987754
No 267
>PRK13768 GTPase; Provisional
Probab=99.51 E-value=2.4e-13 Score=122.55 Aligned_cols=121 Identities=29% Similarity=0.368 Sum_probs=77.6
Q ss_pred eEEEEeCCCCchhh-hhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhc---cccCCCCCEEEEEcCCCCC
Q 017937 164 QMILYDTPGIIEKK-IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGV---GDHKDKLPILLVLNKKDLI 239 (363)
Q Consensus 164 ~i~l~DtpG~~~~~-~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~---~~~~~~~piilV~NK~Dl~ 239 (363)
.+.+|||||..+.. +......+.+..... .++++++|+|++......+.....++ .....+.|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~--~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGS--SKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhc--CCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 68999999954321 122333333333221 18999999999765543332221111 1112579999999999998
Q ss_pred ChhHHHHHHHHHH----------------------------hcCCCCcEEEcccCCCCCHHHHHHHHHhhCCCCC
Q 017937 240 KPGEIAKKLEWYE----------------------------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (363)
Q Consensus 240 ~~~~~~~~~~~~~----------------------------~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~ 286 (363)
+..+.......+. ......+++++||+++.|+++|+++|.+.++.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~~ 250 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGGE 250 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCCC
Confidence 7655433322222 2233458999999999999999999999997643
No 268
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.51 E-value=3.5e-13 Score=120.77 Aligned_cols=128 Identities=19% Similarity=0.225 Sum_probs=85.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh-hhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~-~~~~~~~~~~~~~~ 192 (363)
...+|+++|.+|||||||+|+|++.....++...++|...........+..+.+|||||+.+... ..........+..+
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~ 109 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRY 109 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHH
Confidence 45599999999999999999999988766677767777666555666778999999999865422 11223333344444
Q ss_pred cc--ccceEEEEeeCCC-CCchHHHHHHHhccc-cC--CCCCEEEEEcCCCCCCh
Q 017937 193 GI--NADCIVVLVDACK-APERIDEILEEGVGD-HK--DKLPILLVLNKKDLIKP 241 (363)
Q Consensus 193 ~~--~ad~ii~VvD~~~-~~~~~~~~~~~~~~~-~~--~~~piilV~NK~Dl~~~ 241 (363)
+. ..|+++||..... .....+..+.+.+.. +. --.++++|+||+|...+
T Consensus 110 l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 110 LKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 43 5788888875543 223333333333322 11 12579999999999644
No 269
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.50 E-value=2.4e-13 Score=104.71 Aligned_cols=142 Identities=20% Similarity=0.251 Sum_probs=102.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
+++++|..|+|||||.++|.|.... +..|.-. .+ ..-..+||||-.-. ++.+.........++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l-----ykKTQAv---e~----~d~~~IDTPGEy~~-----~~~~Y~aL~tt~~da 65 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL-----YKKTQAV---EF----NDKGDIDTPGEYFE-----HPRWYHALITTLQDA 65 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh-----hccccee---ec----cCccccCCchhhhh-----hhHHHHHHHHHhhcc
Confidence 7999999999999999999997643 1112110 11 11236899993211 122334444557899
Q ss_pred ceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHH
Q 017937 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (363)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~ 276 (363)
|++++|-.+.++......-+... ..+|+|-|++|+|+..+.++.....++...+ ..++|.+|+..+.|+++|++
T Consensus 66 dvi~~v~~and~~s~f~p~f~~~-----~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG-a~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 66 DVIIYVHAANDPESRFPPGFLDI-----GVKKVIGVVTKADLAEDADISLVKRWLREAG-AEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred ceeeeeecccCccccCCcccccc-----cccceEEEEecccccchHhHHHHHHHHHHcC-CcceEEEeccCcccHHHHHH
Confidence 99999999988765543333322 3456999999999998888888778877655 66999999999999999999
Q ss_pred HHHhh
Q 017937 277 WILTK 281 (363)
Q Consensus 277 ~i~~~ 281 (363)
+|...
T Consensus 140 ~L~~~ 144 (148)
T COG4917 140 YLASL 144 (148)
T ss_pred HHHhh
Confidence 98754
No 270
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.49 E-value=3.3e-14 Score=133.89 Aligned_cols=155 Identities=19% Similarity=0.154 Sum_probs=89.8
Q ss_pred CccccchhhhH--HhhcCceEEeechHhhhHHHHhhhhhhhhhhHhhhhhhccccccccccCcCCCcCCccccccccCCc
Q 017937 13 SLFPHYSTLTA--YREIKFGFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDDGDEMEFDDASSFLSLSEKP 90 (363)
Q Consensus 13 ~~~~~~~~~~~--~~~~~~~~~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~ 90 (363)
-|.|+.+-.|| |++++|.|.||||-+|.+..+.....+.-..-+.-..... .....++|... .+..... ..+
T Consensus 217 Ll~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~---~~~~~~~d~~i-~r~~~d~--~e~ 290 (562)
T KOG1424|consen 217 LLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALG---AIFVGEVDLKI-ARDKGDG--EEI 290 (562)
T ss_pred cCCHHHHHHHHHHHHhcCceEEEEecccccccccccchhhhhhcccchhhhcc---ccccccchhhh-hhhcccc--cch
Confidence 47899999997 9999999999999987666665322211100000000000 00011111000 0000000 011
Q ss_pred CcCCCCCCchh-hhhcccCCCCCCCC-cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEE
Q 017937 91 DRNMASPDDYE-IEEFDYASHPNHKS-GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILY 168 (363)
Q Consensus 91 ~~~~~~~~~~~-~~~~~~~~~~~~~~-~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~ 168 (363)
...... .-.. .... ...+..+. ..|++||.|||||||+||+|.|.+...|+.+||.|++..+..++ ..+.|+
T Consensus 291 ~~v~~~-~~~s~~~~~--~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LC 364 (562)
T KOG1424|consen 291 EDVEQL-RLISAMEPT--PTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLC 364 (562)
T ss_pred hhHHhh-hhhhccccC--CCCcCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---CCceec
Confidence 100000 0000 0000 11222233 48999999999999999999999999999999999998877765 568999
Q ss_pred eCCCCchhhhh
Q 017937 169 DTPGIIEKKIH 179 (363)
Q Consensus 169 DtpG~~~~~~~ 179 (363)
||||++-.++.
T Consensus 365 DCPGLVfPSf~ 375 (562)
T KOG1424|consen 365 DCPGLVFPSFS 375 (562)
T ss_pred CCCCccccCCC
Confidence 99999765554
No 271
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.49 E-value=1.8e-12 Score=118.29 Aligned_cols=130 Identities=16% Similarity=0.216 Sum_probs=79.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecC--------CCCceE-EEEEEEEeCCC--eeEEEEeCCCCchhhh-----h
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN--------KPQTTR-HRILGICSGPE--YQMILYDTPGIIEKKI-----H 179 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~--------~~~~t~-~~~~~~~~~~~--~~i~l~DtpG~~~~~~-----~ 179 (363)
.+|+++|.+|+|||||+|+|++..+..... ...++. ......+...+ .++.+|||||+.+... .
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~ 84 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWK 84 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHH
Confidence 489999999999999999999987654322 222222 22222333333 5799999999854211 1
Q ss_pred hHHHHHHHHHH------------hhcc--ccceEEEEeeCCC-CCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH
Q 017937 180 MLDSMMMKNVR------------SAGI--NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (363)
Q Consensus 180 ~~~~~~~~~~~------------~~~~--~ad~ii~VvD~~~-~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~ 244 (363)
.+...+..+.. ..+. .+|+++|+++.+. +....+..+.+.+. .++|+++|+||+|+....++
T Consensus 85 ~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~e~ 161 (276)
T cd01850 85 PIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPEEL 161 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHHHH
Confidence 11111111111 1111 5789999999874 44555555555544 36899999999999876655
Q ss_pred HHHH
Q 017937 245 AKKL 248 (363)
Q Consensus 245 ~~~~ 248 (363)
....
T Consensus 162 ~~~k 165 (276)
T cd01850 162 KEFK 165 (276)
T ss_pred HHHH
Confidence 4333
No 272
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.48 E-value=3.2e-13 Score=107.77 Aligned_cols=169 Identities=21% Similarity=0.268 Sum_probs=114.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccce-ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
..+.+|+++|++..|||||+-.+.+..+.. .....|................+.+||..|. ..+ ......
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~--~~~-------~n~lPi 88 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQ--REF-------INMLPI 88 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCc--Hhh-------hccCce
Confidence 356699999999999999999999887631 1222222221112223334467889999994 332 233445
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCC---Chh---HHHHHHHHHHhcCCCCcEEEc
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLI---KPG---EIAKKLEWYEKFTDVDEVIPV 263 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~---~~~---~~~~~~~~~~~~~~~~~i~~v 263 (363)
+..++-+++|++|.+.+. .+...|..+........+| |+|++|.|+. +++ .+......+.+..+. +.|.|
T Consensus 89 ac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA-sL~F~ 166 (205)
T KOG1673|consen 89 ACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNA-SLFFC 166 (205)
T ss_pred eecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC-cEEEe
Confidence 578899999999998765 5556666555444334456 6789999974 222 233333444444443 78999
Q ss_pred ccCCCCCHHHHHHHHHhhCCCCCCCCCCC
Q 017937 264 SAKYGHGVEDIRDWILTKLPLGPAYYPKD 292 (363)
Q Consensus 264 SAk~g~gi~eL~~~i~~~l~~~~~~~~~~ 292 (363)
|+....|+..+|..+..++..-+|..|+-
T Consensus 167 Sts~sINv~KIFK~vlAklFnL~~ti~~~ 195 (205)
T KOG1673|consen 167 STSHSINVQKIFKIVLAKLFNLPWTIPEI 195 (205)
T ss_pred eccccccHHHHHHHHHHHHhCCceecccc
Confidence 99999999999999999999988876643
No 273
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.47 E-value=9.1e-14 Score=116.43 Aligned_cols=148 Identities=17% Similarity=0.089 Sum_probs=100.4
Q ss_pred HhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
+..+.++|++++|+|++++.......+.+.+.....++|+++|+||+|+.++..+......+...... .++++||+++.
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~-~~~~iSa~~~~ 81 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPT-IAFHASINNPF 81 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcE-EEEEeeccccc
Confidence 44578999999999999876444455555554332458999999999998776655555555543333 25889999999
Q ss_pred CHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec------CCCeeEEEEE
Q 017937 270 GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKDFIQVE 343 (363)
Q Consensus 270 gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~------~~~~~~i~~~ 343 (363)
|+++|+++|.+.+..... ..+ -.++..+.+|+||||++|.+..... +++ .+....
T Consensus 82 ~~~~L~~~l~~~~~~~~~----------~~~--------~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~-T~~~~~ 142 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSD----------KKQ--------ISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGE-TKVWQY 142 (157)
T ss_pred cHHHHHHHHHHHHhhhcc----------ccc--------eEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCe-eEeEEE
Confidence 999999999876531000 000 0234568999999999999876444 232 222222
Q ss_pred EEEeeCCceeEEecCCC
Q 017937 344 IVVEKNSQKIILIGKVS 360 (363)
Q Consensus 344 i~~~~~~q~~ivig~~G 360 (363)
+. .++...+||++|
T Consensus 143 ~~---~~~~~~liDtPG 156 (157)
T cd01858 143 IT---LMKRIYLIDCPG 156 (157)
T ss_pred EE---cCCCEEEEECcC
Confidence 22 345689999998
No 274
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.46 E-value=1.3e-12 Score=122.02 Aligned_cols=88 Identities=24% Similarity=0.298 Sum_probs=68.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC-----------------eeEEEEeCCCCchhhh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~l~DtpG~~~~~~ 178 (363)
.+|+++|.||||||||+|+|++.+ ..++++|++|+++..+.+...+ .++.++|+||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 489999999999999999999988 5678999999988877655443 2589999999865322
Q ss_pred hhHHHHHHHHHHhhccccceEEEEeeCC
Q 017937 179 HMLDSMMMKNVRSAGINADCIVVLVDAC 206 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~ 206 (363)
. ...+...+...++.||++++|+|+.
T Consensus 82 ~--g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 K--GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred h--HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 1223345566688999999999985
No 275
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.3e-12 Score=116.56 Aligned_cols=166 Identities=18% Similarity=0.199 Sum_probs=110.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceec--CCCCceE--------------------EEEEEEEeCC------CeeE
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT--NKPQTTR--------------------HRILGICSGP------EYQM 165 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~--~~~~~t~--------------------~~~~~~~~~~------~~~i 165 (363)
...+|+++|+...|||||..+|.|--....+ -..+.|. ......+... -..+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 3458999999999999999999873211000 0000000 0000011111 1368
Q ss_pred EEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC-chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH
Q 017937 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (363)
Q Consensus 166 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~ 244 (363)
.|+|.||+ + .++..+.+-..-.|++++|+.++.+. +.+....+..+.-. .-+.+++|-||+|+++.+..
T Consensus 89 SfVDaPGH--e-------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-gik~iiIvQNKIDlV~~E~A 158 (415)
T COG5257 89 SFVDAPGH--E-------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-GIKNIIIVQNKIDLVSRERA 158 (415)
T ss_pred EEeeCCch--H-------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-ccceEEEEecccceecHHHH
Confidence 89999994 2 24455666667789999999998765 55554444333332 33678999999999988776
Q ss_pred HHHHHHHHhcC-----CCCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCC
Q 017937 245 AKKLEWYEKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYY 289 (363)
Q Consensus 245 ~~~~~~~~~~~-----~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~ 289 (363)
.+..+.++++. ...|++++||..+.|++.|+++|.+.++..+...
T Consensus 159 lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~ 208 (415)
T COG5257 159 LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDL 208 (415)
T ss_pred HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCC
Confidence 66555555433 3459999999999999999999999998765543
No 276
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.45 E-value=2.6e-13 Score=129.62 Aligned_cols=160 Identities=18% Similarity=0.185 Sum_probs=111.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCC-ceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
.+..+|+++|+.|+|||||+-+|+..++.. ..|. -.+..+...+.-......++||+.-.+.. .....
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~--~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~---------~~l~~ 75 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVD--AVPRRLPRILIPADVTPENVPTSIVDTSSDSDDR---------LCLRK 75 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccc--cccccCCccccCCccCcCcCceEEEecccccchh---------HHHHH
Confidence 466799999999999999999999988752 2221 12222223344455678999998632211 12334
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccC---CCCCEEEEEcCCCCCChhHH--H-HHHHHHHhcCCCCcEEEc
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEI--A-KKLEWYEKFTDVDEVIPV 263 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~---~~~piilV~NK~Dl~~~~~~--~-~~~~~~~~~~~~~~i~~v 263 (363)
.++.||++.+|++.+++. +.+...|+.++++.. .++|+|+|+||+|....... + .....+..+.....+|+|
T Consensus 76 EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciec 155 (625)
T KOG1707|consen 76 EIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIEC 155 (625)
T ss_pred HHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhh
Confidence 478999999999887743 556667777777765 68999999999999743221 2 233333344444568999
Q ss_pred ccCCCCCHHHHHHHHHhhCC
Q 017937 264 SAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 264 SAk~g~gi~eL~~~i~~~l~ 283 (363)
||++-.++.++|.+-.+.+-
T Consensus 156 SA~~~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 156 SALTLANVSELFYYAQKAVI 175 (625)
T ss_pred hhhhhhhhHhhhhhhhheee
Confidence 99999999999999887663
No 277
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.44 E-value=2.9e-14 Score=116.32 Aligned_cols=159 Identities=17% Similarity=0.210 Sum_probs=104.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccccee-cCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
+..+++|+|..+|||||++.+++..-|..- ....++..-.-...+...+..+.+|||+| ++.++.+ ...|
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtag--qeEfDaI-------tkAy 89 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAG--QEEFDAI-------TKAY 89 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhcc--chhHHHH-------HHHH
Confidence 455899999999999999999996544210 11111111101112334456788999999 5555544 4556
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHH-HHHHHHhcCCCCcEEEcccCCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
++.|.+.++|+..++.. +....|..+.... ...+|.++|-||+|+.+...+.. ..+-+.+..+ ..++.+|++...
T Consensus 90 yrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e-~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~-~RlyRtSvked~ 167 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDRYSFEATLEWYNKVQKE-TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH-KRLYRTSVKEDF 167 (246)
T ss_pred hccccceEEEEecccHHHHHHHHHHHHHHHHH-hccCCeEEeeccchhhHhhhcchHHHHHHHHHhh-hhhhhhhhhhhh
Confidence 89999999999988754 4444444433322 36799999999999986544321 1122222222 367899999999
Q ss_pred CHHHHHHHHHhhCC
Q 017937 270 GVEDIRDWILTKLP 283 (363)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (363)
|+..+|.+|.+.+.
T Consensus 168 NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 168 NVMHVFAYLAEKLT 181 (246)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999998764
No 278
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.7e-12 Score=109.52 Aligned_cols=156 Identities=24% Similarity=0.331 Sum_probs=95.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
..|.++|..++|||+|+..|...... ...+......+.+..+.....++|.||+.. ++....+.... -..
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~----~TvtSiepn~a~~r~gs~~~~LVD~PGH~r-----lR~kl~e~~~~-~~~ 108 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR----GTVTSIEPNEATYRLGSENVTLVDLPGHSR-----LRRKLLEYLKH-NYS 108 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc----CeeeeeccceeeEeecCcceEEEeCCCcHH-----HHHHHHHHccc-ccc
Confidence 47999999999999999999876332 222233344444555556689999999633 22222222211 137
Q ss_pred cceEEEEeeCCCCC---chHHHHHHHhccc---cCCCCCEEEEEcCCCCCChhH---HHH----HHHHHHh---------
Q 017937 196 ADCIVVLVDACKAP---ERIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGE---IAK----KLEWYEK--------- 253 (363)
Q Consensus 196 ad~ii~VvD~~~~~---~~~~~~~~~~~~~---~~~~~piilV~NK~Dl~~~~~---~~~----~~~~~~~--------- 253 (363)
+-++|||+|+.... ....+.+...+-. ....+|+++++||.|+..+.. +.+ .+..+..
T Consensus 109 akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~ 188 (238)
T KOG0090|consen 109 AKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSIS 188 (238)
T ss_pred ceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 88999999987544 2233333333222 236789999999999964321 111 1111100
Q ss_pred ---------------------cC-CCCcEEEcccCCCCCHHHHHHHHHhhC
Q 017937 254 ---------------------FT-DVDEVIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 254 ---------------------~~-~~~~i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
.. ....+.++|+++| +++++.+||.+.+
T Consensus 189 ~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 189 DEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 00 1235788999988 8999999998753
No 279
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.43 E-value=9.5e-13 Score=119.04 Aligned_cols=86 Identities=26% Similarity=0.325 Sum_probs=66.7
Q ss_pred EEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCe-----------------eEEEEeCCCCchhhhhh
Q 017937 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-----------------QMILYDTPGIIEKKIHM 180 (363)
Q Consensus 118 i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~i~l~DtpG~~~~~~~~ 180 (363)
|+++|.||||||||+|+|++.+. .++++|++|.+...+.+...+. ++.++|+||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~- 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK- 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch-
Confidence 58999999999999999999887 5789999999888777655433 4899999998753321
Q ss_pred HHHHHHHHHHhhccccceEEEEeeCC
Q 017937 181 LDSMMMKNVRSAGINADCIVVLVDAC 206 (363)
Q Consensus 181 ~~~~~~~~~~~~~~~ad~ii~VvD~~ 206 (363)
...+...+...++.+|++++|+|+.
T Consensus 79 -~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 -GEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred -hhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 1222234556678999999999974
No 280
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.42 E-value=1.5e-12 Score=134.17 Aligned_cols=115 Identities=23% Similarity=0.280 Sum_probs=78.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCC---------------CceEEEEE----EEEeCCCeeEEEEeCCCCc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP---------------QTTRHRIL----GICSGPEYQMILYDTPGII 174 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~---------------~~t~~~~~----~~~~~~~~~i~l~DtpG~~ 174 (363)
+..+|+++|+.++|||||+.+|+.....+..... +.|..... ..+...+..++|+||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4458999999999999999999864322111111 12221111 1123356889999999974
Q ss_pred hhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC
Q 017937 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 239 (363)
+ + ...+...+..+|++|+|+|+..+.......+...... .+.|.|+++||+|+.
T Consensus 99 d--f-------~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~--~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 D--F-------GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR--ERVKPVLFINKVDRL 152 (731)
T ss_pred C--h-------HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH--cCCCeEEEEECchhh
Confidence 4 2 2345566789999999999998876666666655443 457889999999986
No 281
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=3.2e-13 Score=111.48 Aligned_cols=161 Identities=19% Similarity=0.237 Sum_probs=110.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccce-ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
..+++++|..|.||||++++.+...|.. .....|...+......+.+..++..|||.| ++.+..+... ++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtag--qEk~gglrdg-------yy 80 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAG--QEKKGGLRDG-------YY 80 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeeccc--ceeecccccc-------cE
Confidence 3489999999999999999998887753 122223333333333333458899999999 4444333222 25
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
-.+.++++++|.+... .....|...+.+.. .++|+++++||.|......-........ .....++++||+++.|.
T Consensus 81 I~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~~k~k~v~~~r--kknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 81 IQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARKVKAKPVSFHR--KKNLQYYEISAKSNYNF 157 (216)
T ss_pred EecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccccccccceeee--cccceeEEeeccccccc
Confidence 5778899999998665 44555666555543 5699999999999875441111111111 13357899999999999
Q ss_pred HHHHHHHHhhCCCCCC
Q 017937 272 EDIRDWILTKLPLGPA 287 (363)
Q Consensus 272 ~eL~~~i~~~l~~~~~ 287 (363)
+.-|-|+.+.+..+|.
T Consensus 158 ekPFl~LarKl~G~p~ 173 (216)
T KOG0096|consen 158 ERPFLWLARKLTGDPS 173 (216)
T ss_pred ccchHHHhhhhcCCCC
Confidence 9999999999976654
No 282
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.42 E-value=4.1e-13 Score=117.28 Aligned_cols=154 Identities=20% Similarity=0.271 Sum_probs=86.3
Q ss_pred eeEEEEeCCCCchhh-hhhHHHHHHHHHHhhccccceEEEEeeCCCCCch---HHHHHH--HhccccCCCCCEEEEEcCC
Q 017937 163 YQMILYDTPGIIEKK-IHMLDSMMMKNVRSAGINADCIVVLVDACKAPER---IDEILE--EGVGDHKDKLPILLVLNKK 236 (363)
Q Consensus 163 ~~i~l~DtpG~~~~~-~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~---~~~~~~--~~~~~~~~~~piilV~NK~ 236 (363)
....++||||.+..- ...-.....+... ....-+++||+|....... ....+. .++. ..+.|+|+|+||+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~la--ss~ptvv~YvvDt~rs~~p~tFMSNMlYAcSily--ktklp~ivvfNK~ 191 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLA--SSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILY--KTKLPFIVVFNKT 191 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHh--hcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHH--hccCCeEEEEecc
Confidence 468999999975421 1111111112221 2345689999998654322 122221 1222 2689999999999
Q ss_pred CCCChhHHHHHHHHHH--------------------------hcCCCCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCC
Q 017937 237 DLIKPGEIAKKLEWYE--------------------------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYP 290 (363)
Q Consensus 237 Dl~~~~~~~~~~~~~~--------------------------~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~ 290 (363)
|+.+..-..++...+. .+......+.|||.+|.|.+++|..+.+.+.+....|.
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~yk 271 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEYK 271 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHhh
Confidence 9987643332221111 11123478999999999999999999998876554443
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhhccCCCC
Q 017937 291 KDIVSEHPERFFVGEIIREKIFMQYRNEVP 320 (363)
Q Consensus 291 ~~~~~~~~~~~~~~eiire~i~~~~~~evp 320 (363)
++.-..........+.-+++-+..++...+
T Consensus 272 p~~Ek~k~~k~~~ee~~k~k~le~l~kdm~ 301 (366)
T KOG1532|consen 272 PEYEKKKAEKRLAEEERKKKQLEKLMKDMH 301 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHhccC
Confidence 332222222223344444455555544433
No 283
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.42 E-value=3.6e-12 Score=115.96 Aligned_cols=127 Identities=19% Similarity=0.259 Sum_probs=82.7
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 112 ~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+....+|+++|.+|+||||++|+|++.+...++....++...........+.++.+|||||+.+.. .........+..
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~--~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG--YINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH--HHHHHHHHHHHH
Confidence 346679999999999999999999998876666665555444444444578899999999986432 222333333333
Q ss_pred hc--cccceEEEEeeCCC-CCchHHHHHHHhccccC---CCCCEEEEEcCCCCCC
Q 017937 192 AG--INADCIVVLVDACK-APERIDEILEEGVGDHK---DKLPILLVLNKKDLIK 240 (363)
Q Consensus 192 ~~--~~ad~ii~VvD~~~-~~~~~~~~~~~~~~~~~---~~~piilV~NK~Dl~~ 240 (363)
++ ...|+++||..... .....+..+.+.+.... .-.+.|+|+|++|..+
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 22 36899999955432 23333333333333211 2357999999999774
No 284
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.41 E-value=1.3e-12 Score=110.37 Aligned_cols=119 Identities=24% Similarity=0.324 Sum_probs=65.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+.+.|.++|++|+|||+|+.+|........ .... ...... -...+..+.++|+||+..-+ ..+.+.. .
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T--~tS~--e~n~~~~~~~~~~~~~~lvD~PGH~rlr-----~~~~~~~-~ 71 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPT--VTSM--ENNIAYNVNNSKGKKLRLVDIPGHPRLR-----SKLLDEL-K 71 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B-----S--SEEEECCGSSTCGTCECEEEETT-HCCC-----HHHHHHH-H
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCe--eccc--cCCceEEeecCCCCEEEEEECCCcHHHH-----HHHHHhh-h
Confidence 345899999999999999999998754211 1111 111111 12345689999999963322 2222221 1
Q ss_pred hccccceEEEEeeCCCCC---chHHHHHHHhc---cccCCCCCEEEEEcCCCCCChh
Q 017937 192 AGINADCIVVLVDACKAP---ERIDEILEEGV---GDHKDKLPILLVLNKKDLIKPG 242 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~---~~~~~~~~~~~---~~~~~~~piilV~NK~Dl~~~~ 242 (363)
+...+.+||||+|++... ....+.+...+ ......+|++|++||.|+....
T Consensus 72 ~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 72 YLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred chhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 367899999999997422 11222222222 1123679999999999997644
No 285
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=6e-12 Score=116.68 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=87.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc--cccc-------------eecCCC------CceEEEEEEEEeCCCeeEEEEeCCC
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG--QKLS-------------IVTNKP------QTTRHRILGICSGPEYQMILYDTPG 172 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~--~~~~-------------~~~~~~------~~t~~~~~~~~~~~~~~i~l~DtpG 172 (363)
+....+|+-+|.+|||||..+|+- .... ..|++. |.......-.+.+.++.++++||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 344799999999999999999762 1111 112222 2222233344677889999999999
Q ss_pred CchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCCh
Q 017937 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 241 (363)
+.+.+ +.+.+.+..+|.+|.|+|+..+.+.....+.+.++. .+.|++-++||.|....
T Consensus 91 HeDFS---------EDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrl--R~iPI~TFiNKlDR~~r 148 (528)
T COG4108 91 HEDFS---------EDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRL--RDIPIFTFINKLDREGR 148 (528)
T ss_pred ccccc---------hhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhh--cCCceEEEeeccccccC
Confidence 75433 234445678999999999999999999999999988 89999999999998643
No 286
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=5.6e-12 Score=117.54 Aligned_cols=157 Identities=18% Similarity=0.143 Sum_probs=121.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccccc--eecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
.|+..|+-..|||||+.++.+.... .-....|+|.+.-.......+..+.|+|.||+.+ +...+...+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~---------~i~~miag~~ 72 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPD---------FISNLLAGLG 72 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHH---------HHHHHHhhhc
Confidence 4788999999999999999986532 2356678888887777777788999999999632 3344555677
Q ss_pred ccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcC--CCCcEEEcccCCCCCHH
Q 017937 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT--DVDEVIPVSAKYGHGVE 272 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~--~~~~i~~vSAk~g~gi~ 272 (363)
..|.+++|+|+.++...+....+..++.+ .....++|+||+|+.++..+++....+.... ...++|.+|+++|+||+
T Consensus 73 ~~d~alLvV~~deGl~~qtgEhL~iLdll-gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~ 151 (447)
T COG3276 73 GIDYALLVVAADEGLMAQTGEHLLILDLL-GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIE 151 (447)
T ss_pred CCceEEEEEeCccCcchhhHHHHHHHHhc-CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHH
Confidence 89999999999988877776666665552 2345699999999998766655554443322 34578999999999999
Q ss_pred HHHHHHHhhCC
Q 017937 273 DIRDWILTKLP 283 (363)
Q Consensus 273 eL~~~i~~~l~ 283 (363)
+|.+.|.+...
T Consensus 152 ~Lk~~l~~L~~ 162 (447)
T COG3276 152 ELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHhhh
Confidence 99999999884
No 287
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.39 E-value=1.3e-12 Score=116.79 Aligned_cols=158 Identities=23% Similarity=0.189 Sum_probs=108.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe-CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
..+.|+++|++|+|||||+++|.+.... ..+....|.++...... ..+..+.+.||-|+.+.-+..+-..|. ....-
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~-p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~-ATLee 254 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALY-PNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQ-ATLEE 254 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcC-ccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHH-HHHHH
Confidence 4568999999999999999999965543 23444445544333322 245678899999998776666666553 44455
Q ss_pred ccccceEEEEeeCCCCC-chHHHHHHHhccccC-CCC----CEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccC
Q 017937 193 GINADCIVVLVDACKAP-ERIDEILEEGVGDHK-DKL----PILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~-~~~~~~~~~~~~~~~-~~~----piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk 266 (363)
...+|+++.|+|+++|. +.+...++..++.+. ... .++=|-||+|..+...-.+ . ...+.+||+
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E---------~-n~~v~isal 324 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE---------K-NLDVGISAL 324 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc---------c-CCccccccc
Confidence 78999999999999987 444445555555532 122 2566778888764321110 1 125889999
Q ss_pred CCCCHHHHHHHHHhhCC
Q 017937 267 YGHGVEDIRDWILTKLP 283 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l~ 283 (363)
+|.|++++++.+-..+.
T Consensus 325 tgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 325 TGDGLEELLKAEETKVA 341 (410)
T ss_pred cCccHHHHHHHHHHHhh
Confidence 99999999999887664
No 288
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=9.3e-12 Score=111.99 Aligned_cols=161 Identities=18% Similarity=0.225 Sum_probs=104.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccc--cc----eecCCCCceEEEEEEEE---------eCCCeeEEEEeCCCCchhhhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQK--LS----IVTNKPQTTRHRILGIC---------SGPEYQMILYDTPGIIEKKIH 179 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~--~~----~~~~~~~~t~~~~~~~~---------~~~~~~i~l~DtpG~~~~~~~ 179 (363)
..+++++|+..+|||||..+|..-. .+ ..+...+.|.+.-.... .....++.++|+||+..
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas---- 82 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS---- 82 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH----
Confidence 3589999999999999999986422 11 12233334443221111 22345789999999522
Q ss_pred hHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHH----HHHHh--
Q 017937 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL----EWYEK-- 253 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~----~~~~~-- 253 (363)
+.+.+.....-.|+.++|+|+..+.+.+....+-+-.. .....++|+||+|+..+......+ ..+.+
T Consensus 83 -----LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~--~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtL 155 (522)
T KOG0461|consen 83 -----LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL--LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTL 155 (522)
T ss_pred -----HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh--hccceEEEEeccccccchhhhhHHHHHHHHHHHHH
Confidence 33445555667799999999998775444332222111 345678999999998664432222 22221
Q ss_pred ----cCCCCcEEEcccCCC----CCHHHHHHHHHhhCCCCC
Q 017937 254 ----FTDVDEVIPVSAKYG----HGVEDIRDWILTKLPLGP 286 (363)
Q Consensus 254 ----~~~~~~i~~vSAk~g----~gi~eL~~~i~~~l~~~~ 286 (363)
..+..|++++||+.| +++.+|.+.|.+.+....
T Consensus 156 e~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~ 196 (522)
T KOG0461|consen 156 ESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK 196 (522)
T ss_pred HhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence 235579999999999 899999999999886543
No 289
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.37 E-value=9.1e-13 Score=110.20 Aligned_cols=145 Identities=22% Similarity=0.118 Sum_probs=93.3
Q ss_pred HHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCC
Q 017937 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
.++..+.++|++++|+|++++.......+...+.. .++|+++|+||+|+.+........ .+.... ..+++++||++
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~-~~~~~~-~~~~~~iSa~~ 80 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSRKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWK-SIKESE-GIPVVYVSAKE 80 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHH-HHHHhC-CCcEEEEEccc
Confidence 34555778999999999987654433344444333 468999999999997654433322 222222 24789999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec------CCCeeEEE
Q 017937 268 GHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKDFIQ 341 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~------~~~~~~i~ 341 (363)
|.|+++|++.|.+.++..... .+++..+.+++|+|+++|.+..... ++.+..+
T Consensus 81 ~~gi~~L~~~l~~~~~~~~~~--------------------~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~- 139 (156)
T cd01859 81 RLGTKILRRTIKELAKIDGKE--------------------GKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGE- 139 (156)
T ss_pred cccHHHHHHHHHHHHhhcCCC--------------------cEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeee-
Confidence 999999999999988642110 0133456788888888877764332 1111111
Q ss_pred EEEEEeeCCceeEEecCCC
Q 017937 342 VEIVVEKNSQKIILIGKVS 360 (363)
Q Consensus 342 ~~i~~~~~~q~~ivig~~G 360 (363)
..-...+...+++++|
T Consensus 140 ---~~~~~~~~~~~~DtpG 155 (156)
T cd01859 140 ---QLVKITSKIYLLDTPG 155 (156)
T ss_pred ---EEEEcCCCEEEEECcC
Confidence 1112345688999998
No 290
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.36 E-value=1.3e-12 Score=112.92 Aligned_cols=119 Identities=24% Similarity=0.270 Sum_probs=81.5
Q ss_pred HHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHH-HHHHH-----Hhc-CCCC
Q 017937 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWY-----EKF-TDVD 258 (363)
Q Consensus 186 ~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-~~~~~-----~~~-~~~~ 258 (363)
...+..++..+|++++|+|+++........+.. .. .++|+++|+||+|+.+...... ...+. ... ....
T Consensus 25 ~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~--~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (190)
T cd01855 25 LNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FG--GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPK 100 (190)
T ss_pred HHHHHhcccCCcEEEEEEECccCCCccchhHHH--hc--CCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcc
Confidence 445667789999999999998765433333311 11 4689999999999975432111 11121 111 1223
Q ss_pred cEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEE
Q 017937 259 EVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYK 331 (363)
Q Consensus 259 ~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~ 331 (363)
+++++||++|.|+++|+++|.+.++.+. .++..+.+|+|||+++|.+...
T Consensus 101 ~i~~vSA~~~~gi~eL~~~l~~~l~~~~-----------------------~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 101 DVILISAKKGWGVEELINAIKKLAKKGG-----------------------DVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhcCC-----------------------cEEEEcCCCCCHHHHHHHHHHh
Confidence 6899999999999999999999885211 2456678999999998887653
No 291
>PTZ00416 elongation factor 2; Provisional
Probab=99.35 E-value=4.9e-12 Score=131.71 Aligned_cols=115 Identities=20% Similarity=0.251 Sum_probs=81.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceE---------------EEE--EEEEe--------CCCeeEEEE
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR---------------HRI--LGICS--------GPEYQMILY 168 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~---------------~~~--~~~~~--------~~~~~i~l~ 168 (363)
+..+|+++|+.++|||||+++|+...........++++ ... ...+. ..++.++++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 34489999999999999999998754322112222221 111 11111 125779999
Q ss_pred eCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC
Q 017937 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (363)
Q Consensus 169 DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 239 (363)
||||+.+ +...+...++.+|++|+|+|+..+.......++..+.. .++|+++++||+|+.
T Consensus 98 DtPG~~~---------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVD---------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHh---------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHH--cCCCEEEEEEChhhh
Confidence 9999643 33445666899999999999999887777777776665 578999999999997
No 292
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.35 E-value=8.6e-12 Score=130.15 Aligned_cols=115 Identities=23% Similarity=0.250 Sum_probs=81.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCC---------------ceEEEEE--EEE--------------eCCC
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ---------------TTRHRIL--GIC--------------SGPE 162 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~---------------~t~~~~~--~~~--------------~~~~ 162 (363)
+-.+|+|+|+.++|||||+++|+.....+.....+ .|..... ..+ ...+
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 44589999999999999999998654322111111 1211111 111 1236
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC
Q 017937 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (363)
Q Consensus 163 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 239 (363)
+.++++||||+.+ +...+...++.+|++|+|+|+..+.......+++.+.. .++|+++++||+|+.
T Consensus 98 ~~inliDtPGh~d---------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHH---------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH--CCCCEEEEEECCccc
Confidence 7889999999643 23345566789999999999999887777777666655 689999999999997
No 293
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.35 E-value=4.2e-12 Score=111.61 Aligned_cols=167 Identities=15% Similarity=0.133 Sum_probs=99.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceec-CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHHHHHHHHHHhhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSAG 193 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~--~~~~~~~~~~~~~~~ 193 (363)
+|+++|.+|+||||++|.|+|....... .....|...........+..+.++||||+.+... ..+.....+.+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 7999999999999999999998865333 2233454444445567789999999999865332 122233333334445
Q ss_pred cccceEEEEeeCCCCCchHHHHHHHhcccc-C--CCCCEEEEEcCCCCCChhHHHHH---------HHHHHhcCCCCcEE
Q 017937 194 INADCIVVLVDACKAPERIDEILEEGVGDH-K--DKLPILLVLNKKDLIKPGEIAKK---------LEWYEKFTDVDEVI 261 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~-~--~~~piilV~NK~Dl~~~~~~~~~---------~~~~~~~~~~~~i~ 261 (363)
...++++||+... .+...+....+.+... . .-..++||+|..|...+..+.+. ...+....+ +++
T Consensus 82 ~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~--R~~ 158 (212)
T PF04548_consen 82 PGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG--RYH 158 (212)
T ss_dssp T-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT--CEE
T ss_pred CCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC--EEE
Confidence 6789999999988 4544333333322221 1 22468999999887765443222 222333333 455
Q ss_pred EcccC------CCCCHHHHHHHHHhhCCCCC
Q 017937 262 PVSAK------YGHGVEDIRDWILTKLPLGP 286 (363)
Q Consensus 262 ~vSAk------~g~gi~eL~~~i~~~l~~~~ 286 (363)
.++.+ ....+.+|++.|-+.+....
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 55555 33568889988888886544
No 294
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=3.1e-12 Score=103.48 Aligned_cols=156 Identities=22% Similarity=0.186 Sum_probs=102.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+++++|-.|+|||||++.|-..+.....+ |.++........+.+++.+|..|+.+ ..+.++.++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvP----TlHPTSE~l~Ig~m~ftt~DLGGH~q---------Arr~wkdyf 85 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELSIGGMTFTTFDLGGHLQ---------ARRVWKDYF 85 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCC----CcCCChHHheecCceEEEEccccHHH---------HHHHHHHHH
Confidence 66799999999999999999998876543323 33333344556778999999999633 234577789
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHH---HHHHhc------------C
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKL---EWYEKF------------T 255 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~---~~~~~~------------~ 255 (363)
..+|.++|++|+.+.. .+....+...+... -.+.|+++.+||+|.+.+....+.. ...... .
T Consensus 86 ~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~ 165 (193)
T KOG0077|consen 86 PQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNV 165 (193)
T ss_pred hhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCC
Confidence 9999999999998654 22222222111110 1579999999999998653222211 111110 0
Q ss_pred CCCcEEEcccCCCCCHHHHHHHHHhhC
Q 017937 256 DVDEVIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 256 ~~~~i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
....+|.||...+.|.-+-|.|+...+
T Consensus 166 rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred CeEEEEEEEEEccCccceeeeehhhhc
Confidence 113578899998888777777765543
No 295
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.34 E-value=1.9e-11 Score=107.78 Aligned_cols=164 Identities=13% Similarity=0.115 Sum_probs=96.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe-CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
||+++|..++||||+.+.+.++-.+.-+...+.|.+.....+. .+...+.+||+||.... ... .+.......+++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~-~~~---~~~~~~~~if~~ 76 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDF-MEN---YFNSQREEIFSN 76 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCST-THT---THTCCHHHHHCT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccc-ccc---cccccHHHHHhc
Confidence 6899999999999999998876544344455556554444443 55679999999996321 111 111122334789
Q ss_pred cceEEEEeeCCCC-CchHHHHHH---HhccccCCCCCEEEEEcCCCCCChhHHHHHH--------HHHHhcC-CCCcEEE
Q 017937 196 ADCIVVLVDACKA-PERIDEILE---EGVGDHKDKLPILLVLNKKDLIKPGEIAKKL--------EWYEKFT-DVDEVIP 262 (363)
Q Consensus 196 ad~ii~VvD~~~~-~~~~~~~~~---~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~--------~~~~~~~-~~~~i~~ 262 (363)
++++|||+|+... .......+. ..+....++..+.+.++|+|+..++...+.. +...... ....++.
T Consensus 77 v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (232)
T PF04670_consen 77 VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL 156 (232)
T ss_dssp ESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred cCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence 9999999999833 322222222 2233344788999999999998765433322 1222211 1257889
Q ss_pred cccCCCCCHHHHHHHHHhhCCCC
Q 017937 263 VSAKYGHGVEDIRDWILTKLPLG 285 (363)
Q Consensus 263 vSAk~g~gi~eL~~~i~~~l~~~ 285 (363)
+|... +.+-+.+..++..+-+.
T Consensus 157 TSI~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 157 TSIWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp E-TTS-THHHHHHHHHHHTTSTT
T ss_pred ccCcC-cHHHHHHHHHHHHHccc
Confidence 99887 57888888888877653
No 296
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.33 E-value=3.7e-12 Score=130.99 Aligned_cols=116 Identities=21% Similarity=0.235 Sum_probs=79.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccc---------------eecCCCCceEEEE----EEEEeCCCeeEEEEeCCCCc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRI----LGICSGPEYQMILYDTPGII 174 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~---------------~~~~~~~~t~~~~----~~~~~~~~~~i~l~DtpG~~ 174 (363)
+..+|+++|+.++|||||+++|+..... ......+.|.... ...+.+.++++++|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 3458999999999999999999753110 0001123333221 12245678899999999974
Q ss_pred hhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
+ +. ..+..++..+|++|+|+|+..+.......+...... .+.|+++|+||+|+..
T Consensus 98 ~--f~-------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 D--FG-------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred c--cH-------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH--cCCCEEEEEEChhccc
Confidence 3 21 234556889999999999988776555555554433 5678899999999863
No 297
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=3.1e-11 Score=115.69 Aligned_cols=208 Identities=19% Similarity=0.225 Sum_probs=128.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccc----------------------cc--e------ecCCCCceEEEEEEEEeCCCe
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQK----------------------LS--I------VTNKPQTTRHRILGICSGPEY 163 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~----------------------~~--~------~~~~~~~t~~~~~~~~~~~~~ 163 (363)
....++++|+.++|||||+-+|+..= |. - .....|.|.+.....+.....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 34589999999999999999876311 00 0 123335666666667777788
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC-------chHHHHHHHhccccCCCCCEEEEEcCC
Q 017937 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLPILLVLNKK 236 (363)
Q Consensus 164 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-------~~~~~~~~~~~~~~~~~~piilV~NK~ 236 (363)
.++++|+||+.+ |...+......||+.++|+|++.+. ..+......+++.+ .-..+||++||+
T Consensus 256 ~~tliDaPGhkd---------Fi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKm 325 (603)
T KOG0458|consen 256 IVTLIDAPGHKD---------FIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINKM 325 (603)
T ss_pred eEEEecCCCccc---------cchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeecc
Confidence 999999999633 2344555578999999999998543 22344455555553 245689999999
Q ss_pred CCCCh--hHHHHHHHHHH----hcCC----CCcEEEcccCCCCCHHH------HHHH-----HHhhCCCCCCCCCCCCCC
Q 017937 237 DLIKP--GEIAKKLEWYE----KFTD----VDEVIPVSAKYGHGVED------IRDW-----ILTKLPLGPAYYPKDIVS 295 (363)
Q Consensus 237 Dl~~~--~~~~~~~~~~~----~~~~----~~~i~~vSAk~g~gi~e------L~~~-----i~~~l~~~~~~~~~~~~~ 295 (363)
|+++- +...++...+. ...+ ...++|||+.+|+|+-. |.+| |...+.. ...|.. ..
T Consensus 326 D~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~--~~~p~~-~~ 402 (603)
T KOG0458|consen 326 DLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS--FKIPER-PI 402 (603)
T ss_pred cccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhh--ccCCCC-cc
Confidence 99853 33333322222 2222 23789999999999854 3333 2222211 011111 13
Q ss_pred CchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCCeeEEE
Q 017937 296 EHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQ 341 (363)
Q Consensus 296 ~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~~~~~~~i~ 341 (363)
+.|-++-+.++++ -+..+.+....+..+..+++.++.|.
T Consensus 403 ~kPl~ltIsdi~~-------~~~~~~~i~gkiesG~iq~gqkl~i~ 441 (603)
T KOG0458|consen 403 DKPLRLTISDIYP-------LPSSGVSISGKIESGYIQPGQKLYIM 441 (603)
T ss_pred cCCeEEEhhheee-------cCCCeeEEEEEEeccccccCCEEEEe
Confidence 4466665655553 34555667778888887776655553
No 298
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=4.4e-11 Score=105.64 Aligned_cols=163 Identities=19% Similarity=0.196 Sum_probs=111.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccc----------cc-----eecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQK----------LS-----IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~----------~~-----~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~ 178 (363)
...+|+.+|+.+.|||||..+|...- +. .-....+.|.......+......+..+||||+.+
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD--- 87 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD--- 87 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH---
Confidence 34489999999999999999876311 11 1123346677777777778888999999999633
Q ss_pred hhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCC-EEEEEcCCCCCChhHHHHH-----HHHHH
Q 017937 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKK-----LEWYE 252 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~~~~~~~-----~~~~~ 252 (363)
+.+++.....+.|..|+|+.+++++..+.....-+.++ -+.| +++++||+|+++..++.+. .+.+.
T Consensus 88 ------YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarq--vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs 159 (394)
T COG0050 88 ------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred ------HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhh--cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHH
Confidence 45556666778999999999999987666554444444 5665 5667899999986554332 22222
Q ss_pred hc---CCCCcEEEcccCCCC--------CHHHHHHHHHhhCCCCCC
Q 017937 253 KF---TDVDEVIPVSAKYGH--------GVEDIRDWILTKLPLGPA 287 (363)
Q Consensus 253 ~~---~~~~~i~~vSAk~g~--------gi~eL~~~i~~~l~~~~~ 287 (363)
.+ ....|++.-||..-- .|.+|++.+-++++...+
T Consensus 160 ~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per 205 (394)
T COG0050 160 EYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER 205 (394)
T ss_pred HcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC
Confidence 22 234577877776432 367888888888876444
No 299
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.30 E-value=1.6e-12 Score=108.63 Aligned_cols=146 Identities=20% Similarity=0.186 Sum_probs=93.0
Q ss_pred ceEEEEeeCCCCCchHHHHHH-HhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHH
Q 017937 197 DCIVVLVDACKAPERIDEILE-EGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (363)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~~~-~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~ 275 (363)
|++++|+|+.++......++. ..+.. .++|+++|+||+|+.+...+..+...+.... ...++.+||++|.|+++|+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~-~~~ii~vSa~~~~gi~~L~ 77 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSY-PTIPFKISATNGQGIEKKE 77 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhC-CceEEEEeccCCcChhhHH
Confidence 789999999887655444554 33333 5799999999999987655444433343332 3578999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec------CC-CeeEEEEEEEEee
Q 017937 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PT-AKDFIQVEIVVEK 348 (363)
Q Consensus 276 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~------~~-~~~~i~~~i~~~~ 348 (363)
+.|.+...+....+..+..... ...+...+.+++|||+++|.+..... ++ |...+. +.
T Consensus 78 ~~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~--- 142 (155)
T cd01849 78 SAFTKQTNSNLKSYAKDGKLKK----------SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VK--- 142 (155)
T ss_pred HHHHHHhHHHHHHHHhcccccc----------CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EE---
Confidence 9997764311000000000000 01244567899999999999887553 22 223332 22
Q ss_pred CCceeEEecCCC
Q 017937 349 NSQKIILIGKVS 360 (363)
Q Consensus 349 ~~q~~ivig~~G 360 (363)
..+...+|+++|
T Consensus 143 ~~~~~~liDtPG 154 (155)
T cd01849 143 LDNKIKLLDTPG 154 (155)
T ss_pred ecCCEEEEECCC
Confidence 236689999998
No 300
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.30 E-value=3.4e-11 Score=108.96 Aligned_cols=149 Identities=21% Similarity=0.189 Sum_probs=102.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccce--------------------------------ecCCCCceEEEEEEEEeCCC
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--------------------------------VTNKPQTTRHRILGICSGPE 162 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~--------------------------------~~~~~~~t~~~~~~~~~~~~ 162 (363)
..+.+.+|...-|||||+-+|+.....+ .....|.|.+..+..+....
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K 85 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK 85 (431)
T ss_pred ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc
Confidence 4489999999999999999998654322 12334677777777788888
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh
Q 017937 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (363)
Q Consensus 163 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~ 242 (363)
.+|.+.||||+.+ +.+++..-...||++|+++|+..+...+..........+ .-..++++.||+||++-.
T Consensus 86 RkFIiADTPGHeQ---------YTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL-GIrhvvvAVNKmDLvdy~ 155 (431)
T COG2895 86 RKFIIADTPGHEQ---------YTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL-GIRHVVVAVNKMDLVDYS 155 (431)
T ss_pred ceEEEecCCcHHH---------HhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh-CCcEEEEEEeeecccccC
Confidence 9999999999633 345555567899999999999988755544322222211 225688999999998632
Q ss_pred --HHHHHHHH---HHhcCC--CCcEEEcccCCCCCHHH
Q 017937 243 --EIAKKLEW---YEKFTD--VDEVIPVSAKYGHGVED 273 (363)
Q Consensus 243 --~~~~~~~~---~~~~~~--~~~i~~vSAk~g~gi~e 273 (363)
...++... +....+ ...++|+||..|.||-.
T Consensus 156 e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 156 EEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 22222222 222222 24689999999999843
No 301
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.29 E-value=3.4e-12 Score=116.74 Aligned_cols=156 Identities=20% Similarity=0.213 Sum_probs=101.8
Q ss_pred HHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEccc
Q 017937 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (363)
Q Consensus 186 ~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (363)
.+.+...+..+|++++|+|+..+.......+.+.+ .++|+++|+||+|+.+..........+.. .+ .+++.+||
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-~~-~~vi~iSa 85 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR----GNKPRLIVLNKADLADPAVTKQWLKYFEE-KG-IKALAINA 85 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH----CCCCEEEEEEccccCCHHHHHHHHHHHHH-cC-CeEEEEEC
Confidence 34566678999999999999877654444555544 35899999999999765544444444433 22 36899999
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec------CCCeeE
Q 017937 266 KYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKDF 339 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~------~~~~~~ 339 (363)
+++.|+++|++.|.+.++............... -+++..+.+|+|||+++|.+..... +++ ++
T Consensus 86 ~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~----------~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~-T~ 154 (276)
T TIGR03596 86 KKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRP----------IRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGV-TK 154 (276)
T ss_pred CCcccHHHHHHHHHHHHHHhhhhhhhccCCCCC----------eEEEEECCCCCCHHHHHHHHhCCCccccCCCCCe-ec
Confidence 999999999999988876432110000000000 1255667899999999999875442 222 22
Q ss_pred EEEEEEEeeCCceeEEecCCCC
Q 017937 340 IQVEIVVEKNSQKIILIGKVSP 361 (363)
Q Consensus 340 i~~~i~~~~~~q~~ivig~~G~ 361 (363)
..+.+.+ +....+++++|=
T Consensus 155 ~~~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 155 GQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred ceEEEEe---CCCEEEEECCCc
Confidence 2233322 346789999994
No 302
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.29 E-value=2.8e-11 Score=102.27 Aligned_cols=112 Identities=29% Similarity=0.322 Sum_probs=70.7
Q ss_pred EEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE----------------------------------------
Q 017937 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI---------------------------------------- 157 (363)
Q Consensus 118 i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~---------------------------------------- 157 (363)
|+++|..++|||||+|+|+|.+....+..+.|........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7899999999999999999987654333332221111000
Q ss_pred ---------------EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchH-HHHHHHhcc
Q 017937 158 ---------------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI-DEILEEGVG 221 (363)
Q Consensus 158 ---------------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~-~~~~~~~~~ 221 (363)
.......+.|+||||+..... ... ..+..++..+|++|||+++.+..... ...+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~--~~~---~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~ 155 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNS--EHT---EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLD 155 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHT--TTS---HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHT
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchh--hhH---HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhc
Confidence 011123589999999843211 111 34556679999999999999866433 444555554
Q ss_pred ccCCCCCEEEEEcCC
Q 017937 222 DHKDKLPILLVLNKK 236 (363)
Q Consensus 222 ~~~~~~piilV~NK~ 236 (363)
. ....+++|+||+
T Consensus 156 ~--~~~~~i~V~nk~ 168 (168)
T PF00350_consen 156 P--DKSRTIFVLNKA 168 (168)
T ss_dssp T--TCSSEEEEEE-G
T ss_pred C--CCCeEEEEEcCC
Confidence 4 455699999995
No 303
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.29 E-value=1.4e-11 Score=106.39 Aligned_cols=158 Identities=23% Similarity=0.306 Sum_probs=112.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
.+|+++|.|.||||||+..+...... ...+..||...+.+...+++..+.++|.||+.....+.-.+ -+++....+.
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGR--GRQviavArt 139 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGR--GRQVIAVART 139 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhh-hhceeeeEEEeecceEEecCceEEEecCcccccccccCCCC--CceEEEEeec
Confidence 38999999999999999999886643 46777889999999999999999999999987644322110 1234455788
Q ss_pred cceEEEEeeCCCCCchH---HH----------------------------------------------------------
Q 017937 196 ADCIVVLVDACKAPERI---DE---------------------------------------------------------- 214 (363)
Q Consensus 196 ad~ii~VvD~~~~~~~~---~~---------------------------------------------------------- 214 (363)
||+++.|.|++.+...- ..
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 99999999998754111 00
Q ss_pred -------HHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 215 -------ILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 215 -------~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
.+.........-.+++-|-||+|..+-+++.. +...+ .-+-+|+...-|++.|++.|.+.+.
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdr----lAr~P---nsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDR----LARQP---NSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHH----HhcCC---CcEEEEeccccCHHHHHHHHHHHhc
Confidence 00011111113357788999999887665543 33333 2466899999999999999998774
No 304
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.29 E-value=3.2e-11 Score=112.39 Aligned_cols=159 Identities=19% Similarity=0.228 Sum_probs=99.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc----ccc-----------eecCCCC---ceEEEEE---E---E--EeCCCeeEEEEe
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ----KLS-----------IVTNKPQ---TTRHRIL---G---I--CSGPEYQMILYD 169 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~----~~~-----------~~~~~~~---~t~~~~~---~---~--~~~~~~~i~l~D 169 (363)
..|+++|+.++|||||+|+|.+. +.. .+++.+| +|.++.. . + .+.-..++.++|
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlID 97 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVD 97 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEE
Confidence 37999999999999999999988 655 5677777 6665543 1 1 122347899999
Q ss_pred CCCCchhh-----------------------hhhHHHHHHHHHHhhcc-ccceEEEEe-eCC------CCCchHHHHHHH
Q 017937 170 TPGIIEKK-----------------------IHMLDSMMMKNVRSAGI-NADCIVVLV-DAC------KAPERIDEILEE 218 (363)
Q Consensus 170 tpG~~~~~-----------------------~~~~~~~~~~~~~~~~~-~ad~ii~Vv-D~~------~~~~~~~~~~~~ 218 (363)
|+|+.... |..-.+.+ ++..+. .+|+.|+|. |.+ .........+.+
T Consensus 98 cvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiG---T~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 98 CVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIG---TRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred CCCcccCCCccceeccccccccCCcccccCchhhhhhhh---HHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99985421 00011111 344456 899999998 875 333445555666
Q ss_pred hccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhC
Q 017937 219 GVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 219 ~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
.++. .++|+++|+||+|-..+.. ......+....+ .+++++|+.. ..-+++...+.+.+
T Consensus 175 eLk~--~~kPfiivlN~~dp~~~et-~~l~~~l~eky~-vpvl~v~c~~-l~~~DI~~il~~vL 233 (492)
T TIGR02836 175 ELKE--LNKPFIILLNSTHPYHPET-EALRQELEEKYD-VPVLAMDVES-MRESDILSVLEEVL 233 (492)
T ss_pred HHHh--cCCCEEEEEECcCCCCchh-HHHHHHHHHHhC-CceEEEEHHH-cCHHHHHHHHHHHH
Confidence 6666 7899999999999443222 222233333333 4778887763 23344444444433
No 305
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.29 E-value=5.6e-11 Score=105.48 Aligned_cols=126 Identities=20% Similarity=0.241 Sum_probs=82.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEE--------------------------------------
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL-------------------------------------- 155 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~-------------------------------------- 155 (363)
..|.|+++|..|+||||++++|.+..+...... ..|+.+..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g-~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCC-cccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 556899999999999999999998753211110 01111000
Q ss_pred --------------EEEeCCCeeEEEEeCCCCchhh----hhhHHHHHHHHHHhhccc-cceEEEEeeCCCCCchHH-HH
Q 017937 156 --------------GICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGIN-ADCIVVLVDACKAPERID-EI 215 (363)
Q Consensus 156 --------------~~~~~~~~~i~l~DtpG~~~~~----~~~~~~~~~~~~~~~~~~-ad~ii~VvD~~~~~~~~~-~~ 215 (363)
.+..-....+.++||||+.... ...+...+.+.+..++++ .+++++|+|+.......+ ..
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 0011112468999999986321 133445566667788884 569999999987665544 35
Q ss_pred HHHhccccCCCCCEEEEEcCCCCCChh
Q 017937 216 LEEGVGDHKDKLPILLVLNKKDLIKPG 242 (363)
Q Consensus 216 ~~~~~~~~~~~~piilV~NK~Dl~~~~ 242 (363)
+.+.++. .+.|+++|+||+|..++.
T Consensus 184 ia~~ld~--~~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 184 LAKEVDP--QGERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHH--cCCcEEEEEECCCCCCcc
Confidence 5555555 678999999999998643
No 306
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.28 E-value=2.2e-11 Score=106.67 Aligned_cols=57 Identities=26% Similarity=0.349 Sum_probs=43.5
Q ss_pred CCCEEEEEcCCCCCCh--hHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhC
Q 017937 226 KLPILLVLNKKDLIKP--GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 226 ~~piilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
..|.++++||+|+.+. .........+....+..+++++||++|.|++++++++.+..
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678999999999753 22344444555444557899999999999999999998753
No 307
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.27 E-value=5.4e-12 Score=103.66 Aligned_cols=129 Identities=21% Similarity=0.118 Sum_probs=85.8
Q ss_pred HHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCC
Q 017937 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
.+...+..+|++++|+|++++.......+.+++.....++|+++|+||+|+.++..+......+.... .+++++||++
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~--~~ii~iSa~~ 81 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEG--IVVVFFSALK 81 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcC--CeEEEEEecC
Confidence 45566899999999999988775544455555544224789999999999987665555555554432 4789999998
Q ss_pred CCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec------CCCeeEEE
Q 017937 268 GHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKDFIQ 341 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~------~~~~~~i~ 341 (363)
+.+ +++..+.+++|||+++|.+..... ++. .+-.
T Consensus 82 ~~~---------------------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~-~~~~ 121 (141)
T cd01857 82 ENA---------------------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGK-TKHF 121 (141)
T ss_pred CCc---------------------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCc-ccce
Confidence 876 133456778888888777665443 222 2212
Q ss_pred EEEEEeeCCceeEEecCCCC
Q 017937 342 VEIVVEKNSQKIILIGKVSP 361 (363)
Q Consensus 342 ~~i~~~~~~q~~ivig~~G~ 361 (363)
..+.+. ....++|++|=
T Consensus 122 ~~~~~~---~~~~i~DtpG~ 138 (141)
T cd01857 122 QTIFLT---PTITLCDCPGL 138 (141)
T ss_pred EEEEeC---CCEEEEECCCc
Confidence 223322 25789999994
No 308
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.27 E-value=2.3e-11 Score=108.44 Aligned_cols=114 Identities=27% Similarity=0.329 Sum_probs=57.3
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhcc--ccceEEEEeeCCCCCch---HHHHHHHhccccCCCCCEEEEEcCCCC
Q 017937 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPER---IDEILEEGVGDHKDKLPILLVLNKKDL 238 (363)
Q Consensus 164 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~--~ad~ii~VvD~~~~~~~---~~~~~~~~~~~~~~~~piilV~NK~Dl 238 (363)
.+.++||||+.+ ....+..+.. ..+.+. ..-++++++|+...... ....+....-..+.+.|.+.|+||+|+
T Consensus 92 ~y~l~DtPGQiE--lf~~~~~~~~-i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIE--LFTHSDSGRK-IVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHH--HHHHSHHHHH-HHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGG
T ss_pred cEEEEeCCCCEE--EEEechhHHH-HHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCc
Confidence 689999999543 2222222222 222233 34578999998754322 122222222122257999999999999
Q ss_pred CChhHHHHHHHH---------------------HHh---cCCCC-cEEEcccCCCCCHHHHHHHHHhh
Q 017937 239 IKPGEIAKKLEW---------------------YEK---FTDVD-EVIPVSAKYGHGVEDIRDWILTK 281 (363)
Q Consensus 239 ~~~~~~~~~~~~---------------------~~~---~~~~~-~i~~vSAk~g~gi~eL~~~i~~~ 281 (363)
.++. .....++ +.. ..+.. +++++|+++++|+++|+..|-+.
T Consensus 169 ~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 169 LSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp S-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred ccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 8733 1111111 111 12333 78999999999999999988764
No 309
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.25 E-value=1.2e-11 Score=104.96 Aligned_cols=155 Identities=21% Similarity=0.198 Sum_probs=96.9
Q ss_pred HHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcc
Q 017937 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (363)
Q Consensus 185 ~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vS 264 (363)
.+.+++..+.+||++++|+|++.+.......+...+ .++|+++|+||+|+.+........+.+... ...++.+|
T Consensus 9 ~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~~vi~iS 82 (171)
T cd01856 9 ALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKKTKKWLKYFESK--GEKVLFVN 82 (171)
T ss_pred HHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHHHHHHHHHHHhc--CCeEEEEE
Confidence 345567778999999999999876544333343333 357999999999997654443333333332 24689999
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec------CCCee
Q 017937 265 AKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKD 338 (363)
Q Consensus 265 Ak~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~------~~~~~ 338 (363)
|+++.|+++|.+.|...++..... ......... -++...+.+++|||+++|.+..... ++++.
T Consensus 83 a~~~~gi~~L~~~l~~~l~~~~~~-~~~~~~~~~----------~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~ 151 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLLKDIEKL-KAKGLLPRG----------IRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTK 151 (171)
T ss_pred CCCcccHHHHHHHHHHHHHHHhhh-hhcccCCCC----------eEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEe
Confidence 999999999999999876421000 000000000 0234567899999998877765332 22222
Q ss_pred EEEEEEEEeeCCceeEEecCCC
Q 017937 339 FIQVEIVVEKNSQKIILIGKVS 360 (363)
Q Consensus 339 ~i~~~i~~~~~~q~~ivig~~G 360 (363)
.. ..+... +...+++++|
T Consensus 152 ~~-~~~~~~---~~~~~iDtpG 169 (171)
T cd01856 152 GI-QWIKIS---PGIYLLDTPG 169 (171)
T ss_pred ee-EEEEec---CCEEEEECCC
Confidence 22 222222 6788999998
No 310
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=6.5e-11 Score=119.35 Aligned_cols=117 Identities=23% Similarity=0.245 Sum_probs=89.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce-----e------------cCCCCceEEEEEEEEeCCC-eeEEEEeCCCCch
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----V------------TNKPQTTRHRILGICSGPE-YQMILYDTPGIIE 175 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~-----~------------~~~~~~t~~~~~~~~~~~~-~~i~l~DtpG~~~ 175 (363)
+..+|+|+|+.++|||||..+|+.....+ + ....|.|.......+.+.+ +.++++|||||++
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 44589999999999999999987433211 1 1222445544445566774 9999999999876
Q ss_pred hhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCCh
Q 017937 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 241 (363)
.. ..+.++++-+|++++|+|+..+.+.+.+.+++.+.. .++|.++++||+|+...
T Consensus 89 Ft---------~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~--~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 89 FT---------IEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK--YGVPRILFVNKMDRLGA 143 (697)
T ss_pred cH---------HHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh--cCCCeEEEEECcccccc
Confidence 43 345566889999999999999998888888887776 78999999999999754
No 311
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.23 E-value=5.5e-12 Score=103.86 Aligned_cols=158 Identities=17% Similarity=0.229 Sum_probs=109.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC---CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
++.++|+-++|||+++.+.+...+.. ........+....++.++ -.++.|||..| ++.+..+ .+-++
T Consensus 27 k~lVig~~~vgkts~i~ryv~~nfs~-~yRAtIgvdfalkVl~wdd~t~vRlqLwdIag--Qerfg~m-------trVyy 96 (229)
T KOG4423|consen 27 KVLVIGDLGVGKTSSIKRYVHQNFSY-HYRATIGVDFALKVLQWDDKTIVRLQLWDIAG--QERFGNM-------TRVYY 96 (229)
T ss_pred hhheeeeccccchhHHHHHHHHHHHH-HHHHHHhHHHHHHHhccChHHHHHHHHhcchh--hhhhcce-------EEEEe
Confidence 79999999999999999998776642 111111111111222222 25678999999 5555444 33458
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc----CCCCCEEEEEcCCCCCChhHHH--HHHHHHHhcCCCCcEEEccc
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIA--KKLEWYEKFTDVDEVIPVSA 265 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~----~~~~piilV~NK~Dl~~~~~~~--~~~~~~~~~~~~~~i~~vSA 265 (363)
+.+.+.++|||.+++. +....|..++.... ....|+++..||||........ ...+.+.+..++...+++|+
T Consensus 97 kea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~ 176 (229)
T KOG4423|consen 97 KEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSA 176 (229)
T ss_pred cCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecc
Confidence 8999999999998765 44555555443322 2346789999999997543322 45566777778889999999
Q ss_pred CCCCCHHHHHHHHHhhCCC
Q 017937 266 KYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l~~ 284 (363)
|.+.|++|..+.+++++.-
T Consensus 177 Kenkni~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 177 KENKNIPEAQRELVEKILV 195 (229)
T ss_pred ccccChhHHHHHHHHHHHh
Confidence 9999999999999887754
No 312
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.1e-10 Score=107.47 Aligned_cols=87 Identities=24% Similarity=0.326 Sum_probs=67.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC------------------CeeEEEEeCCCCchhh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP------------------EYQMILYDTPGIIEKK 177 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------------~~~i~l~DtpG~~~~~ 177 (363)
.+++|+|.||||||||+|+++... ....++|.+|.++..+..... ...+.++|.+|++...
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 479999999999999999999988 557899999998877764321 1357899999997644
Q ss_pred h--hhHHHHHHHHHHhhccccceEEEEeeCCC
Q 017937 178 I--HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (363)
Q Consensus 178 ~--~~~~~~~~~~~~~~~~~ad~ii~VvD~~~ 207 (363)
. ..+...|. .-++.+|+++.|+|+..
T Consensus 82 s~GeGLGNkFL----~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFL----DNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHH----HhhhhcCeEEEEEEecC
Confidence 3 33444443 34688999999999873
No 313
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.22 E-value=2e-11 Score=107.39 Aligned_cols=181 Identities=19% Similarity=0.255 Sum_probs=99.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc------cccceecCCC--Cce------------------EEEEEEE----------
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKP--QTT------------------RHRILGI---------- 157 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~------~~~~~~~~~~--~~t------------------~~~~~~~---------- 157 (363)
+...|+|.|+||+|||||+++|.. .++....-.| ..| ...+...
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 456899999999999999999852 2332211111 001 0111111
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC--chHHHHHHHhccccCCC
Q 017937 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDK 226 (363)
Q Consensus 158 ---------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~ 226 (363)
+..-++.+.++.|.|..+.... ...-+|.+++|+-...+. +....-++++
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~------------I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------- 168 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD------------IADMADTVVLVLVPGLGDEIQAIKAGIMEI------- 168 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH------------HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH------------HHHhcCeEEEEecCCCccHHHHHhhhhhhh-------
Confidence 2234578999999997664321 156799999998776443 3333334443
Q ss_pred CCEEEEEcCCCCCChhHHHH-HHHHHHhc-----CCCCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCCC---Cc
Q 017937 227 LPILLVLNKKDLIKPGEIAK-KLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVS---EH 297 (363)
Q Consensus 227 ~piilV~NK~Dl~~~~~~~~-~~~~~~~~-----~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~~---~~ 297 (363)
.=++|+||+|+...+.... ....+... ....|++.+||.+|.|+++|++.|.+....-. ...... .+
T Consensus 169 -aDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~---~sg~~~~rr~~ 244 (266)
T PF03308_consen 169 -ADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLK---ESGELEERRRE 244 (266)
T ss_dssp --SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHH---HTTHHHHHHHH
T ss_pred -ccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHH---HcchHHHHHHH
Confidence 2389999999654433222 22222211 12358999999999999999999987543100 000001 11
Q ss_pred hHHHHHHHHHHHHHHhhccC
Q 017937 298 PERFFVGEIIREKIFMQYRN 317 (363)
Q Consensus 298 ~~~~~~~eiire~i~~~~~~ 317 (363)
..+.++..++++.+...++.
T Consensus 245 q~~~~~~~~~~~~l~~~~~~ 264 (266)
T PF03308_consen 245 QARREMWELIEEELLERLRA 264 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 23445667777777766654
No 314
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.20 E-value=4.4e-10 Score=104.03 Aligned_cols=105 Identities=20% Similarity=0.282 Sum_probs=65.4
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 161 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
.++.+.|+||+|..+... ..+..+|.++++.+...+ ..... +...+ .++|.++|+||+|+..
T Consensus 125 ~g~D~viidT~G~~~~e~------------~i~~~aD~i~vv~~~~~~-~el~~-~~~~l----~~~~~ivv~NK~Dl~~ 186 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSEV------------DIANMADTFVVVTIPGTG-DDLQG-IKAGL----MEIADIYVVNKADGEG 186 (300)
T ss_pred CCCCEEEEeCCCCchhhh------------HHHHhhceEEEEecCCcc-HHHHH-HHHHH----hhhccEEEEEcccccc
Confidence 357899999999753221 124568888888654322 22111 22211 3578899999999986
Q ss_pred hhHHHHHH-------HHHHhc-CC-CCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 241 PGEIAKKL-------EWYEKF-TD-VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 241 ~~~~~~~~-------~~~~~~-~~-~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
........ ..+... .+ ..+++++||++|.|+++|+++|.+...
T Consensus 187 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 187 ATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred hhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 54321111 111111 11 236899999999999999999998743
No 315
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.20 E-value=1.3e-11 Score=113.55 Aligned_cols=155 Identities=19% Similarity=0.206 Sum_probs=100.7
Q ss_pred HHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccC
Q 017937 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (363)
Q Consensus 187 ~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk 266 (363)
+.+...+..+|++++|+|+..+.......+...+. ++|+++|+||+|+.+..........+... + .+++.+||+
T Consensus 16 ~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----~kp~iiVlNK~DL~~~~~~~~~~~~~~~~-~-~~vi~vSa~ 89 (287)
T PRK09563 16 REIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----NKPRLLILNKSDLADPEVTKKWIEYFEEQ-G-IKALAINAK 89 (287)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----CCCEEEEEEchhcCCHHHHHHHHHHHHHc-C-CeEEEEECC
Confidence 45566789999999999998776554445555442 58999999999997654444444444322 2 468999999
Q ss_pred CCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec------CCCeeEE
Q 017937 267 YGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKDFI 340 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~------~~~~~~i 340 (363)
++.|+++|++.|.+.++............... -+++..+.+|+|||+++|.+..... ++.+...
T Consensus 90 ~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~----------~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~ 159 (287)
T PRK09563 90 KGQGVKKILKAAKKLLKEKNERRKAKGMRPRA----------IRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ 159 (287)
T ss_pred CcccHHHHHHHHHHHHHHHHhhhhhcccCcCc----------eEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE
Confidence 99999999999988775321100000000000 0245667999999999999876543 3322222
Q ss_pred EEEEEEeeCCceeEEecCCCC
Q 017937 341 QVEIVVEKNSQKIILIGKVSP 361 (363)
Q Consensus 341 ~~~i~~~~~~q~~ivig~~G~ 361 (363)
+.+. .+....+++++|=
T Consensus 160 -~~~~---~~~~~~l~DtPGi 176 (287)
T PRK09563 160 -QWIK---LGKGLELLDTPGI 176 (287)
T ss_pred -EEEE---eCCcEEEEECCCc
Confidence 2232 2346789999993
No 316
>PRK12289 GTPase RsgA; Reviewed
Probab=99.18 E-value=3.8e-11 Score=112.60 Aligned_cols=109 Identities=21% Similarity=0.284 Sum_probs=79.0
Q ss_pred hccccceEEEEeeCCCCC-ch--HHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCC
Q 017937 192 AGINADCIVVLVDACKAP-ER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~-~~--~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
.+.++|.+++|+|+.++. .. +..++. .... .++|+++|+||+||.+......+...+.. .+ .+++++||++|
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~-~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~-~g-~~v~~iSA~tg 160 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLV-KAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQ-WG-YQPLFISVETG 160 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHH-HHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHh-cC-CeEEEEEcCCC
Confidence 378999999999998654 22 233333 2223 57999999999999876555444444433 23 37899999999
Q ss_pred CCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec
Q 017937 269 HGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR 333 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~ 333 (363)
.|+++|+++|...+ ++..+.+++||||++|.+.....
T Consensus 161 ~GI~eL~~~L~~ki----------------------------~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 161 IGLEALLEQLRNKI----------------------------TVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred CCHHHHhhhhccce----------------------------EEEEeCCCCCHHHHHHHHcCccc
Confidence 99999999885321 13457899999999999886543
No 317
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.18 E-value=4.1e-10 Score=110.75 Aligned_cols=126 Identities=18% Similarity=0.087 Sum_probs=79.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCC-CCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh-hHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~-~~~~~~~~~~~~ 191 (363)
-..+|+++|.+|+||||++|+|++.....+... ++||+. ........+..+.++||||+.+.... .........+..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 445899999999999999999999875545443 555553 23233345788999999998653211 223344444544
Q ss_pred hcc--ccceEEEEeeCCCCCc-hHHHHHHHhccc-cC--CCCCEEEEEcCCCCCC
Q 017937 192 AGI--NADCIVVLVDACKAPE-RIDEILEEGVGD-HK--DKLPILLVLNKKDLIK 240 (363)
Q Consensus 192 ~~~--~ad~ii~VvD~~~~~~-~~~~~~~~~~~~-~~--~~~piilV~NK~Dl~~ 240 (363)
++. .+|++|||........ .....+.+.+.. +. .-..+|||+|..|..+
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 444 4899999987653222 122222222221 11 2356899999999985
No 318
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.18 E-value=3.3e-11 Score=108.08 Aligned_cols=108 Identities=19% Similarity=0.315 Sum_probs=77.5
Q ss_pred hccccceEEEEeeCCCCC---chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCC
Q 017937 192 AGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~---~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
+++++|.+++|+|++++. .....|+. .+.. .++|+++|+||+||.+..... +....+.. .+ .+++.+||++
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~-~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~-~g-~~v~~~SAkt 107 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLV-VAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN-IG-YQVLMTSSKN 107 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHH-HHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHH-CC-CeEEEEecCC
Confidence 478999999999998655 33444443 3333 679999999999997654433 33344443 23 4799999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEe
Q 017937 268 GHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKT 332 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~ 332 (363)
|.|+++|++.+.+.+ .+..+.+++||||++|.+....
T Consensus 108 g~gi~eLf~~l~~~~----------------------------~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 108 QDGLKELIEALQNRI----------------------------SVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred chhHHHHHhhhcCCE----------------------------EEEECCCCCCHHHHHHHHhhhh
Confidence 999999999876421 1234688999999998887653
No 319
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.17 E-value=3.4e-10 Score=98.30 Aligned_cols=80 Identities=21% Similarity=0.238 Sum_probs=56.4
Q ss_pred cceEEEEeeCCCCCchHHHHHHHhccccCCCCCE--EEEEcCCCCCCh--hHHHHHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI--LLVLNKKDLIKP--GEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~pi--ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
+|.++.|+|+.+....... .. ....+ ++++||+|+.+. .++....+......+..+++++||++|+|+
T Consensus 113 ~~~~i~vvD~~~~~~~~~~-~~-------~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi 184 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPRK-GG-------PGITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGL 184 (199)
T ss_pred hCcEEEEEEcchhhhhhhh-hH-------hHhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCH
Confidence 5789999999865432211 11 12233 899999999852 334444555555455678999999999999
Q ss_pred HHHHHHHHhhCC
Q 017937 272 EDIRDWILTKLP 283 (363)
Q Consensus 272 ~eL~~~i~~~l~ 283 (363)
++++++|.+.+.
T Consensus 185 ~el~~~i~~~~~ 196 (199)
T TIGR00101 185 DTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHhhcC
Confidence 999999997654
No 320
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.16 E-value=1.3e-10 Score=102.19 Aligned_cols=168 Identities=22% Similarity=0.099 Sum_probs=107.4
Q ss_pred CCCCCCCcEEEEEcCCCCChHHHHHHHhccccce--ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh-hhHHHHH
Q 017937 109 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSMM 185 (363)
Q Consensus 109 ~~~~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~-~~~~~~~ 185 (363)
+.|..+.+.++++|.+|||||||+|.++..+... ...+++.|+...... -+..+.++|.||+....+ ..+.+.+
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~y~~~~~~d~ 206 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH---VGKSWYEVDLPGYGRAGYGFELPADW 206 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee---ccceEEEEecCCcccccCCccCcchH
Confidence 3455567899999999999999999998765332 233667776544333 246789999999422111 0111111
Q ss_pred HHHHHhhc---cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhH------HHHHHHHHHhc--
Q 017937 186 MKNVRSAG---INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------IAKKLEWYEKF-- 254 (363)
Q Consensus 186 ~~~~~~~~---~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~------~~~~~~~~~~~-- 254 (363)
......|+ ++--.+++++|++.+....+....+++.+ .++|+.+|+||||....-. .......+...
T Consensus 207 ~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge--~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~ 284 (320)
T KOG2486|consen 207 DKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE--NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR 284 (320)
T ss_pred hHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh--cCCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence 12222222 23446788899998888888888888887 8899999999999863321 11111111111
Q ss_pred ---CCCCcEEEcccCCCCCHHHHHHHHHhh
Q 017937 255 ---TDVDEVIPVSAKYGHGVEDIRDWILTK 281 (363)
Q Consensus 255 ---~~~~~i~~vSAk~g~gi~eL~~~i~~~ 281 (363)
....|++.+|+.++.|+++|+-.|...
T Consensus 285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred cceeccCCceeeecccccCceeeeeehhhh
Confidence 112356789999999999987666544
No 321
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.15 E-value=2.3e-10 Score=107.02 Aligned_cols=160 Identities=19% Similarity=0.119 Sum_probs=86.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc----cceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~----~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
.+|+|+|.+|+|||||+|+|.|-. .+..+....||........ ..-..+.+||.||+....+ .. ..+.+.+
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f-~~-~~Yl~~~-- 110 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNF-PP-EEYLKEV-- 110 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS---H-HHHHHHT--
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCC-CH-HHHHHHc--
Confidence 489999999999999999998632 1111111223333222221 2224699999999754332 22 2222222
Q ss_pred hccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC------------ChhH-HHHHHH----HHHhc
Q 017937 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI------------KPGE-IAKKLE----WYEKF 254 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~------------~~~~-~~~~~~----~~~~~ 254 (363)
.+...|.+|++.+. .+...+.++...++. .++|+.+|-+|+|.. +.+. ++++.+ .+.+.
T Consensus 111 ~~~~yD~fiii~s~--rf~~ndv~La~~i~~--~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 111 KFYRYDFFIIISSE--RFTENDVQLAKEIQR--MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp TGGG-SEEEEEESS--S--HHHHHHHHHHHH--TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccccCEEEEEeCC--CCchhhHHHHHHHHH--cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 26688987777653 455666677777766 789999999999961 1111 222222 22221
Q ss_pred C-CCCcEEEcccCCC--CCHHHHHHHHHhhCCC
Q 017937 255 T-DVDEVIPVSAKYG--HGVEDIRDWILTKLPL 284 (363)
Q Consensus 255 ~-~~~~i~~vSAk~g--~gi~eL~~~i~~~l~~ 284 (363)
. ...++|.+|+..- .....|.+.|.+.++.
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence 1 3347899998764 4688899999988875
No 322
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.15 E-value=9.1e-11 Score=106.15 Aligned_cols=55 Identities=27% Similarity=0.432 Sum_probs=46.0
Q ss_pred CCEEEEEcCCCCCC--hhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhh
Q 017937 227 LPILLVLNKKDLIK--PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (363)
Q Consensus 227 ~piilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~ 281 (363)
.+-++|+||+|+.+ ..++......+....+..+++++||++|+|+++|.+||.++
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 55699999999986 34566677777777777899999999999999999999874
No 323
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.14 E-value=7.6e-10 Score=92.96 Aligned_cols=79 Identities=20% Similarity=0.164 Sum_probs=53.9
Q ss_pred eEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh--HHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHH
Q 017937 198 CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (363)
Q Consensus 198 ~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~ 275 (363)
.-|+|+|.+.+.....+-. .. -..-=++|+||.|+.+.- +++...+..++..+..+++.+|+++|+|+++++
T Consensus 120 ~~v~VidvteGe~~P~K~g-P~-----i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~ 193 (202)
T COG0378 120 LRVVVIDVTEGEDIPRKGG-PG-----IFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWL 193 (202)
T ss_pred eEEEEEECCCCCCCcccCC-Cc-----eeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHH
Confidence 6677777776643211000 00 001238999999998643 345566666777777899999999999999999
Q ss_pred HHHHhhC
Q 017937 276 DWILTKL 282 (363)
Q Consensus 276 ~~i~~~l 282 (363)
+|+....
T Consensus 194 ~~i~~~~ 200 (202)
T COG0378 194 RFIEPQA 200 (202)
T ss_pred HHHHhhc
Confidence 9987654
No 324
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.14 E-value=7.1e-10 Score=98.93 Aligned_cols=150 Identities=21% Similarity=0.298 Sum_probs=91.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc------cccceec--CCCCceEEEEE---------------E--------------
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVT--NKPQTTRHRIL---------------G-------------- 156 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~------~~~~~~~--~~~~~t~~~~~---------------~-------------- 156 (363)
+...|+|.|.||+|||||+.+|.. ..+.... +....|.-.+. .
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 555899999999999999999852 2222211 11111110000 0
Q ss_pred --------EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCch--HHHHHHHhccccCCC
Q 017937 157 --------ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER--IDEILEEGVGDHKDK 226 (363)
Q Consensus 157 --------~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~--~~~~~~~~~~~~~~~ 226 (363)
.++--++.+.++.|.|..+..-. ....+|.+++|.-..-+.+- ...-+++
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev~------------I~~~aDt~~~v~~pg~GD~~Q~iK~GimE-------- 189 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEVD------------IANMADTFLVVMIPGAGDDLQGIKAGIME-------- 189 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchhH------------HhhhcceEEEEecCCCCcHHHHHHhhhhh--------
Confidence 02334567899999997653321 14568998888866544322 2222322
Q ss_pred CCEEEEEcCCCCCChhHH----HHHHHH----HHhcCCCCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 227 LPILLVLNKKDLIKPGEI----AKKLEW----YEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 227 ~piilV~NK~Dl~~~~~~----~~~~~~----~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
.-=|+|+||.|+...+.. ...+.. ........+++.+||.+|+|+++|++.|.+...
T Consensus 190 iaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 190 IADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred hhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 233899999997654322 111111 222334568999999999999999999988664
No 325
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.11 E-value=2.8e-10 Score=107.90 Aligned_cols=142 Identities=23% Similarity=0.207 Sum_probs=92.7
Q ss_pred HHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh----HHHHHHHHHHhcCCC--CcE
Q 017937 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEV 260 (363)
Q Consensus 187 ~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~i 260 (363)
+....+...++++++|+|+.+........+.+.+ .+.|+++|+||+|+.+.. .+...........+. ..+
T Consensus 55 ~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i 130 (360)
T TIGR03597 55 NLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDI 130 (360)
T ss_pred HHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcE
Confidence 3444556789999999999877655555555543 357999999999997532 222222222222232 258
Q ss_pred EEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEe--------
Q 017937 261 IPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKT-------- 332 (363)
Q Consensus 261 ~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~-------- 332 (363)
+.+||++|.|+++|++.|.+.... ..++..+.+|+||||++|.+....
T Consensus 131 ~~vSAk~g~gv~eL~~~l~~~~~~------------------------~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~ 186 (360)
T TIGR03597 131 ILVSAKKGNGIDELLDKIKKARNK------------------------KDVYVVGVTNVGKSSLINKLLKQNNGDKDVIT 186 (360)
T ss_pred EEecCCCCCCHHHHHHHHHHHhCC------------------------CeEEEECCCCCCHHHHHHHHHhhccCCcceee
Confidence 999999999999999999765320 134566789999999988876532
Q ss_pred ---cCCCeeEEEEEEEEeeCCceeEEecCCC
Q 017937 333 ---RPTAKDFIQVEIVVEKNSQKIILIGKVS 360 (363)
Q Consensus 333 ---~~~~~~~i~~~i~~~~~~q~~ivig~~G 360 (363)
.++++..+ +.+.. .....++|++|
T Consensus 187 ~s~~pgtT~~~---~~~~~-~~~~~l~DtPG 213 (360)
T TIGR03597 187 TSPFPGTTLDL---IEIPL-DDGHSLYDTPG 213 (360)
T ss_pred ecCCCCeEeeE---EEEEe-CCCCEEEECCC
Confidence 24433332 12232 23457999998
No 326
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.09 E-value=2.1e-10 Score=99.62 Aligned_cols=157 Identities=25% Similarity=0.309 Sum_probs=112.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
+|.++|.|.+||||++..|.+... .+..+.++|...+.+.....+.++.+.|.||+.+...+.-.+ -+++....+.|
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgr--g~qviavartc 137 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGR--GKQVIAVARTC 137 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccccCCCC--ccEEEEEeecc
Confidence 899999999999999999998654 467888899999999999999999999999997654322111 12344457889
Q ss_pred ceEEEEeeCCCCCchHH------------------------------------------HHHH-----------------
Q 017937 197 DCIVVLVDACKAPERID------------------------------------------EILE----------------- 217 (363)
Q Consensus 197 d~ii~VvD~~~~~~~~~------------------------------------------~~~~----------------- 217 (363)
+++++|.|+..+...-. ..++
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT 217 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT 217 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence 99999999876531100 0000
Q ss_pred -----HhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 218 -----EGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 218 -----~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
..+...+..+|++.++||+|-..-+++. .. ......+++||.++-|+++|++.+.+.+.
T Consensus 218 ~DdLIdvVegnr~yVp~iyvLNkIdsISiEELd----ii---~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 218 ADDLIDVVEGNRIYVPCIYVLNKIDSISIEELD----II---YTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhhhccCceeeeeeeeecccceeeeeccc----ee---eeccceeecccccccchHHHHHHHhhcch
Confidence 0001111357889999999987654432 11 12335799999999999999999998774
No 327
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.08 E-value=2.4e-09 Score=97.71 Aligned_cols=134 Identities=13% Similarity=0.186 Sum_probs=76.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecC--------CCCce-EEEEEEEEeC--CCeeEEEEeCCCCchhh-----hh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN--------KPQTT-RHRILGICSG--PEYQMILYDTPGIIEKK-----IH 179 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~--------~~~~t-~~~~~~~~~~--~~~~i~l~DtpG~~~~~-----~~ 179 (363)
.+|.++|.+|+|||||+|.|++........ ...++ .......... ....+.++||||+.+.- ..
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 379999999999999999999876543321 01111 1111112222 23578899999985421 12
Q ss_pred hHHHHHHHHHHhhc-------------cccceEEEEeeCCC-CCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH
Q 017937 180 MLDSMMMKNVRSAG-------------INADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (363)
Q Consensus 180 ~~~~~~~~~~~~~~-------------~~ad~ii~VvD~~~-~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~ 245 (363)
.+......+...++ ...|++||+++.+. +....+...+..+. ..+++|-|+.|+|...+.++.
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls---~~vNvIPvIaKaD~lt~~el~ 161 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS---KRVNVIPVIAKADTLTPEELQ 161 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT---TTSEEEEEESTGGGS-HHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc---ccccEEeEEecccccCHHHHH
Confidence 22222222222211 24689999999864 45666655555443 468999999999999988876
Q ss_pred HHHHHHH
Q 017937 246 KKLEWYE 252 (363)
Q Consensus 246 ~~~~~~~ 252 (363)
.....+.
T Consensus 162 ~~k~~i~ 168 (281)
T PF00735_consen 162 AFKQRIR 168 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655444
No 328
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=3.3e-09 Score=96.58 Aligned_cols=132 Identities=20% Similarity=0.300 Sum_probs=86.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC--------------------------------
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-------------------------------- 162 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-------------------------------- 162 (363)
.|.|.++|.-..||||+++.|+...+......|..|.+.......+..
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 458999999999999999999998876433333333333322211100
Q ss_pred ---------eeEEEEeCCCCchhhhhhHHHH--HHHHHHhhccccceEEEEeeCCCCC-chHHHHHHHhccccCCCCCEE
Q 017937 163 ---------YQMILYDTPGIIEKKIHMLDSM--MMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPIL 230 (363)
Q Consensus 163 ---------~~i~l~DtpG~~~~~~~~~~~~--~~~~~~~~~~~ad~ii~VvD~~~~~-~~~~~~~~~~~~~~~~~~pii 230 (363)
-.++++||||+.....+.+.+. +.....-....||.|++++|+..-. ......+...++. ..-.+-
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG--~EdkiR 215 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG--HEDKIR 215 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC--CcceeE
Confidence 1489999999876544433221 2333344577899999999987533 3334445555554 456678
Q ss_pred EEEcCCCCCChhHHHHHH
Q 017937 231 LVLNKKDLIKPGEIAKKL 248 (363)
Q Consensus 231 lV~NK~Dl~~~~~~~~~~ 248 (363)
||+||.|.++..++-.+.
T Consensus 216 VVLNKADqVdtqqLmRVy 233 (532)
T KOG1954|consen 216 VVLNKADQVDTQQLMRVY 233 (532)
T ss_pred EEeccccccCHHHHHHHH
Confidence 999999999888765544
No 329
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=7.1e-10 Score=106.72 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=86.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce-----------------ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~-----------------~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~ 176 (363)
+-.+|++.-+-.+||||+.++++...... .....+.|.......+.|..+.++++||||+.+.
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 44489999999999999999976432111 1122234444444456677899999999998776
Q ss_pred hhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCCh
Q 017937 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 241 (363)
.+. +.++++-.|++|+|+|+..+.+.+...+.+..+. .++|.|..+||+|.+..
T Consensus 118 T~E---------VeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r--y~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 118 TFE---------VERALRVLDGAVLVLDAVAGVESQTETVWRQMKR--YNVPRICFINKMDRMGA 171 (721)
T ss_pred EEE---------ehhhhhhccCeEEEEEcccceehhhHHHHHHHHh--cCCCeEEEEehhhhcCC
Confidence 543 3344778899999999999988888777777766 78999999999998643
No 330
>PRK13796 GTPase YqeH; Provisional
Probab=99.01 E-value=1.5e-09 Score=103.06 Aligned_cols=112 Identities=22% Similarity=0.209 Sum_probs=77.6
Q ss_pred Hhhccccc-eEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh----HHHHHHHHHHhcCCC--CcEEE
Q 017937 190 RSAGINAD-CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEVIP 262 (363)
Q Consensus 190 ~~~~~~ad-~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~i~~ 262 (363)
...+..+| +|++|+|+.+........+.+.. .+.|+++|+||+|+.+.. .+..+........+. ..++.
T Consensus 63 l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~ 138 (365)
T PRK13796 63 LNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVL 138 (365)
T ss_pred HHhhcccCcEEEEEEECccCCCchhHHHHHHh----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence 34455556 99999999886655555555443 367999999999997532 222232222232232 36899
Q ss_pred cccCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEE
Q 017937 263 VSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVS 329 (363)
Q Consensus 263 vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~ 329 (363)
+||++|.|+++|++.|.+..... .++..+.+|+||||++|.+.
T Consensus 139 vSAk~g~gI~eL~~~I~~~~~~~------------------------~v~vvG~~NvGKSTLiN~L~ 181 (365)
T PRK13796 139 ISAQKGHGIDELLEAIEKYREGR------------------------DVYVVGVTNVGKSTLINRII 181 (365)
T ss_pred EECCCCCCHHHHHHHHHHhcCCC------------------------eEEEEcCCCCcHHHHHHHHH
Confidence 99999999999999998764210 23456799999999998885
No 331
>PRK00098 GTPase RsgA; Reviewed
Probab=98.99 E-value=5.1e-10 Score=103.43 Aligned_cols=109 Identities=20% Similarity=0.283 Sum_probs=74.5
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCCh-hHHHHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP-GEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
+.++|++++|+|+.++. ......++..+.. .++|+++|+||+|+... .........+... + .+++++||++|.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~-g-~~v~~vSA~~g~ 153 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAI-G-YDVLELSAKEGE 153 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHC-C-CeEEEEeCCCCc
Confidence 68999999999997654 2222233333333 67899999999999733 3333333333332 3 479999999999
Q ss_pred CHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec
Q 017937 270 GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR 333 (363)
Q Consensus 270 gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~ 333 (363)
|+++|++.|...+ +...+.+++||||++|.+.....
T Consensus 154 gi~~L~~~l~gk~----------------------------~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 154 GLDELKPLLAGKV----------------------------TVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred cHHHHHhhccCce----------------------------EEEECCCCCCHHHHHHHHhCCcC
Confidence 9999998863211 23456889999999987766543
No 332
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.96 E-value=1.6e-09 Score=90.68 Aligned_cols=56 Identities=30% Similarity=0.412 Sum_probs=46.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~ 173 (363)
..+|+++|.||||||||+|+|.+.....++..+++|+....... +..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 34799999999999999999999888888999999987654332 235899999994
No 333
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.96 E-value=1.5e-09 Score=91.91 Aligned_cols=56 Identities=36% Similarity=0.421 Sum_probs=47.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~ 173 (363)
..+|+++|.||+|||||+|+|.+.....++..|++|+........ .++.++||||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~---~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD---KKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC---CCEEEEECcCC
Confidence 358999999999999999999998887889999999976554432 46899999994
No 334
>PRK12288 GTPase RsgA; Reviewed
Probab=98.96 E-value=2.2e-09 Score=100.82 Aligned_cols=108 Identities=22% Similarity=0.305 Sum_probs=76.5
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH---HHHHHHHHHhcCCCCcEEEcccCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
..++|.+++|++....+ ..++.++. .... .++|.++|+||+|+.+... .......+.. .+ .+++++||++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~-~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~-~g-~~v~~vSA~t 192 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLV-ACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRN-IG-YRVLMVSSHT 192 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHH-HHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHh-CC-CeEEEEeCCC
Confidence 57899999999876443 33444443 3333 5789999999999986443 2222333322 23 4899999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec
Q 017937 268 GHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR 333 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~ 333 (363)
+.|+++|+++|...+ ....+.+++||||++|.+..+..
T Consensus 193 g~GideL~~~L~~ki----------------------------~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 193 GEGLEELEAALTGRI----------------------------SIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CcCHHHHHHHHhhCC----------------------------EEEECCCCCCHHHHHHHhccccc
Confidence 999999999986432 12457999999999999987654
No 335
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.95 E-value=1.2e-09 Score=92.46 Aligned_cols=140 Identities=16% Similarity=0.138 Sum_probs=82.2
Q ss_pred ceEEEEeeCCCCCchHHHHHHHh--ccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcE--------------
Q 017937 197 DCIVVLVDACKAPERIDEILEEG--VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEV-------------- 260 (363)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~~~~~--~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i-------------- 260 (363)
|++++|+|+..+.......+.+. +.. .++|+|+|+||+|+.++..+..+...+........+
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~--~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAG--GNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQK 78 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhcc--CCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhc
Confidence 78999999998765544555555 333 568999999999999877776666666553221000
Q ss_pred ---------EEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEE
Q 017937 261 ---------IPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYK 331 (363)
Q Consensus 261 ---------~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~ 331 (363)
..+|+..+.|.+.+++.+.+....+.. ..+ -.++..+.+|+|||+++|.+...
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~----------~~~~~vG~pnvGKSslin~l~~~ 140 (172)
T cd04178 79 SVKVEAASADLLRSSVCFGADCLLKLLKNYSRNKDI--------KTS----------ITVGVVGFPNVGKSSLINSLKRS 140 (172)
T ss_pred ccccchhhhhhhhhccccCHHHHHHHHHHHhhcccc--------ccC----------cEEEEEcCCCCCHHHHHHHHhCc
Confidence 112333334444444444332221100 000 02456679999999999998875
Q ss_pred ec------CCCeeEEEEEEEEeeCCceeEEecCCC
Q 017937 332 TR------PTAKDFIQVEIVVEKNSQKIILIGKVS 360 (363)
Q Consensus 332 ~~------~~~~~~i~~~i~~~~~~q~~ivig~~G 360 (363)
.. ++++... +.+.. .....+++++|
T Consensus 141 ~~~~~~~~pg~T~~~-~~~~~---~~~~~l~DtPG 171 (172)
T cd04178 141 RACNVGATPGVTKSM-QEVHL---DKKVKLLDSPG 171 (172)
T ss_pred ccceecCCCCeEcce-EEEEe---CCCEEEEECcC
Confidence 43 3332222 22222 23477999998
No 336
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=4e-09 Score=102.39 Aligned_cols=126 Identities=21% Similarity=0.277 Sum_probs=82.9
Q ss_pred hhcccCCCCCCCCcEEEEEcCCCCChHHHHHHHhccccceec----------------CCCCceEEEE--EEE---EeCC
Q 017937 103 EEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVT----------------NKPQTTRHRI--LGI---CSGP 161 (363)
Q Consensus 103 ~~~~~~~~~~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~----------------~~~~~t~~~~--~~~---~~~~ 161 (363)
..+......+.+-.+|+++|+-.+|||+|+..|........+ ...+.+.... ... ....
T Consensus 116 ~yl~~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~K 195 (971)
T KOG0468|consen 116 EYLAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGK 195 (971)
T ss_pred HHHHHhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCc
Confidence 333333334445568999999999999999999865432110 0011111111 111 1233
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC
Q 017937 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (363)
Q Consensus 162 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 239 (363)
.+-++++||||++.. .+.+...++.+|++++|+|+..+..-..+.+.+..-+ .+.|+++|+||+|++
T Consensus 196 S~l~nilDTPGHVnF---------~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq--~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 196 SYLMNILDTPGHVNF---------SDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ--NRLPIVVVINKVDRL 262 (971)
T ss_pred eeeeeeecCCCcccc---------hHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh--ccCcEEEEEehhHHH
Confidence 466899999997653 3445566889999999999998876555555555444 689999999999974
No 337
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.94 E-value=1.3e-08 Score=93.27 Aligned_cols=166 Identities=17% Similarity=0.147 Sum_probs=102.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce-------------ecCCCCceEEEEEEEEe---------------------
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-------------VTNKPQTTRHRILGICS--------------------- 159 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~-------------~~~~~~~t~~~~~~~~~--------------------- 159 (363)
....|+.+|+.++|||||+-.|......- ..-..+.+.+.....+.
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v 195 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV 195 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence 34579999999999999998886433210 00011112221111111
Q ss_pred --CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCC
Q 017937 160 --GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (363)
Q Consensus 160 --~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~D 237 (363)
..+.-+.|+||.|+...-...++.. .-...|-.++++-+.++.+......+-..-. ...|+|+|++|+|
T Consensus 196 v~~aDklVsfVDtvGHEpwLrTtirGL-------~gqk~dYglLvVaAddG~~~~tkEHLgi~~a--~~lPviVvvTK~D 266 (527)
T COG5258 196 VKRADKLVSFVDTVGHEPWLRTTIRGL-------LGQKVDYGLLVVAADDGVTKMTKEHLGIALA--MELPVIVVVTKID 266 (527)
T ss_pred hhhcccEEEEEecCCccHHHHHHHHHH-------hccccceEEEEEEccCCcchhhhHhhhhhhh--hcCCEEEEEEecc
Confidence 1123478999999532111111111 1357899999999999987777766665544 6899999999999
Q ss_pred CCChhHHHHHHHHHHh---------------------------cCCCCcEEEcccCCCCCHHHHHHHHHhhCCCCCCC
Q 017937 238 LIKPGEIAKKLEWYEK---------------------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAY 288 (363)
Q Consensus 238 l~~~~~~~~~~~~~~~---------------------------~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~ 288 (363)
+.+.+.+....+.+.. ..+..|+|.+|+.||+|++-|.+.+...-+...|.
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp~rr~~~ 344 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPKRRRWD 344 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCCcccccC
Confidence 9877654433322221 11246899999999999987766655443332333
No 338
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=2.4e-08 Score=90.17 Aligned_cols=163 Identities=20% Similarity=0.174 Sum_probs=108.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc-------c---cce-----ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ-------K---LSI-----VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~-------~---~~~-----~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~ 178 (363)
...+|+-+|+...|||||..++..- + +.. -....+.|.......+......+--+||||+.+
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD--- 129 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD--- 129 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH---
Confidence 3458999999999999999887521 1 111 123346676666666666778889999999633
Q ss_pred hhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCC-CCEEEEEcCCCCCChhHHHHH-----HHHHH
Q 017937 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPGEIAKK-----LEWYE 252 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~-~piilV~NK~Dl~~~~~~~~~-----~~~~~ 252 (363)
+.+++..-..+.|++|+|+.++++...+....+-+.++ -+ ..+++.+||.|++++.+..+. .+.+.
T Consensus 130 ------YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQ--VGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLs 201 (449)
T KOG0460|consen 130 ------YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQ--VGVKHIVVFINKVDLVDDPEMLELVEMEIRELLS 201 (449)
T ss_pred ------HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHH--cCCceEEEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 45556666788999999999999997777665555555 33 457777899999955443222 12222
Q ss_pred h---cCCCCcEEEcccC---CCC-------CHHHHHHHHHhhCCCCCC
Q 017937 253 K---FTDVDEVIPVSAK---YGH-------GVEDIRDWILTKLPLGPA 287 (363)
Q Consensus 253 ~---~~~~~~i~~vSAk---~g~-------gi~eL~~~i~~~l~~~~~ 287 (363)
. .....|++.-||+ .|. .|..|++.+-++++...+
T Consensus 202 e~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R 249 (449)
T KOG0460|consen 202 EFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER 249 (449)
T ss_pred HcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc
Confidence 2 2344688887765 332 256777777777765433
No 339
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.91 E-value=1.7e-09 Score=99.37 Aligned_cols=108 Identities=22% Similarity=0.270 Sum_probs=74.7
Q ss_pred ccccceEEEEeeCCCCC---chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 193 GINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~---~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
+.++|++++|+|+.++. .....++. .+.. .++|+++|+||+|+.+..........+.. .+ .+++++||++|.
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~-~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-~g-~~v~~vSA~~g~ 150 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLV-AAEA--AGIEPVIVLTKADLLDDEEEELELVEALA-LG-YPVLAVSAKTGE 150 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHH-HHHH--cCCCEEEEEEHHHCCChHHHHHHHHHHHh-CC-CeEEEEECCCCc
Confidence 78999999999998765 33334333 3333 57899999999999765332222222222 23 489999999999
Q ss_pred CHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec
Q 017937 270 GVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR 333 (363)
Q Consensus 270 gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~ 333 (363)
|+++|+.+|... .+...+.+++||||++|.+.+...
T Consensus 151 gi~~L~~~L~~k----------------------------~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 151 GLDELREYLKGK----------------------------TSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred cHHHHHhhhccc----------------------------eEEEECCCCCCHHHHHHHHhchhh
Confidence 999999877531 123456888999998887766543
No 340
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.88 E-value=4.2e-09 Score=86.46 Aligned_cols=55 Identities=35% Similarity=0.585 Sum_probs=46.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII 174 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~ 174 (363)
+++++|.+|+|||||+|+|.+.....++..+++|++.....++ ..+.+|||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLT---PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeC---CCEEEEECCCcC
Confidence 8999999999999999999998887788889998886554442 268999999963
No 341
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.4e-08 Score=100.18 Aligned_cols=114 Identities=22% Similarity=0.223 Sum_probs=82.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEE---------------EEEEEeCCCeeEEEEeCCCCchhhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR---------------ILGICSGPEYQMILYDTPGIIEKKI 178 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~---------------~~~~~~~~~~~i~l~DtpG~~~~~~ 178 (363)
...+++++.+...|||||...|+..+..+.+...|.-|.. .....-.+++.++++|+||+++..
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~- 86 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS- 86 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh-
Confidence 3348999999999999999999876654433333332211 111122367889999999987643
Q ss_pred hhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCC
Q 017937 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl 238 (363)
..+..+.+-||++++++|+..+...+...+.+.... .+...++|+||+|.
T Consensus 87 --------sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~--~~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 --------SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI--EGLKPILVINKIDR 136 (887)
T ss_pred --------hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH--ccCceEEEEehhhh
Confidence 234455778999999999999887777777765444 56778999999994
No 342
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.85 E-value=4.7e-09 Score=97.81 Aligned_cols=61 Identities=43% Similarity=0.587 Sum_probs=52.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~ 177 (363)
+..+++++|.||||||||||+|.+.....++..||+|+........ ..+.++||||+....
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii~~~ 191 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD---DGIYLLDTPGIIPPK 191 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC---CCeEEecCCCcCCCC
Confidence 3457999999999999999999999998899999999987766554 348999999986543
No 343
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1e-08 Score=91.23 Aligned_cols=116 Identities=21% Similarity=0.340 Sum_probs=77.8
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC-chHHHHHHHhccccCCCCCEEEEEcCCCCCChh
Q 017937 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (363)
Q Consensus 164 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~ 242 (363)
.+.|+|+||+ + .++..+..-..-.|++++++.+..+. +.+....+....-. .=+.++++-||+|+...+
T Consensus 126 HVSfVDCPGH-D--------iLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-~LkhiiilQNKiDli~e~ 195 (466)
T KOG0466|consen 126 HVSFVDCPGH-D--------ILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDLIKES 195 (466)
T ss_pred EEEeccCCch-H--------HHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-hhceEEEEechhhhhhHH
Confidence 4679999995 1 13344444455668888888887654 33333322222211 226789999999999776
Q ss_pred HHHHHHHHHHhcC-----CCCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCC
Q 017937 243 EIAKKLEWYEKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYY 289 (363)
Q Consensus 243 ~~~~~~~~~~~~~-----~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~ 289 (363)
...+..+.+.++. ...|++++||.-+.|++-+.++|.+.++...+.+
T Consensus 196 ~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf 247 (466)
T KOG0466|consen 196 QALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDF 247 (466)
T ss_pred HHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcccc
Confidence 5544444443322 3358999999999999999999999998765544
No 344
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.4e-08 Score=92.62 Aligned_cols=181 Identities=20% Similarity=0.198 Sum_probs=109.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccce-------------ecCCCCceEEEEEEE---------------------EeC
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-------------VTNKPQTTRHRILGI---------------------CSG 160 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~-------------~~~~~~~t~~~~~~~---------------------~~~ 160 (363)
..+++++|...+|||||+--|....... ..-..+.|....... +..
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 3489999999999999988776433210 001112221111111 111
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc--cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCC
Q 017937 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (363)
Q Consensus 161 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~--~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl 238 (363)
...-++|+|.+|+. ++ .+.....+ -..|.+++|+.+..+........+.+... .+.|++++.+|+|+
T Consensus 247 SSKlvTfiDLAGh~--kY-------~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~A--L~iPfFvlvtK~Dl 315 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHA--KY-------QKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAA--LNIPFFVLVTKMDL 315 (591)
T ss_pred hcceEEEeecccch--hh-------heeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHH--hCCCeEEEEEeecc
Confidence 22358899999953 22 11111111 24688899999988876666666666655 78999999999999
Q ss_pred CChhHHHHHHHHHHh----------------------------cCCCCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCC
Q 017937 239 IKPGEIAKKLEWYEK----------------------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYP 290 (363)
Q Consensus 239 ~~~~~~~~~~~~~~~----------------------------~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~ 290 (363)
.++..+......+.. ..+..|+|.+|..+|+|++-|... ...+++......
T Consensus 316 ~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f-Ln~Lsp~~~~~e 394 (591)
T KOG1143|consen 316 VDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF-LNCLSPAGTAEE 394 (591)
T ss_pred ccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH-HhhcCCcCChHH
Confidence 877444333222221 224568999999999999766554 455555444444
Q ss_pred CCCCCCchHHHHHHHHH
Q 017937 291 KDIVSEHPERFFVGEII 307 (363)
Q Consensus 291 ~~~~~~~~~~~~~~eii 307 (363)
.+++...+-.|.+.|+.
T Consensus 395 ~~~L~q~~~eFqvdEiy 411 (591)
T KOG1143|consen 395 RIQLVQLPAEFQVDEIY 411 (591)
T ss_pred HHHHhcCcceeeHhHee
Confidence 44555556666666654
No 345
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.80 E-value=5.2e-08 Score=88.23 Aligned_cols=88 Identities=26% Similarity=0.290 Sum_probs=67.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC-----------------CeeEEEEeCCCCchh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-----------------EYQMILYDTPGIIEK 176 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~i~l~DtpG~~~~ 176 (363)
.+++++|||.||||||||+|+|...... ....|.+|.++....+... ...+.++|++|+...
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 4559999999999999999999998877 7899999998876653221 135899999998764
Q ss_pred hh--hhHHHHHHHHHHhhccccceEEEEeeCC
Q 017937 177 KI--HMLDSMMMKNVRSAGINADCIVVLVDAC 206 (363)
Q Consensus 177 ~~--~~~~~~~~~~~~~~~~~ad~ii~VvD~~ 206 (363)
.. ..+... ..+-++.+|+++.|+++.
T Consensus 98 As~G~GLGN~----FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNK----FLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHH----HHHhhhhccceeEEEEec
Confidence 32 233333 344478899999999875
No 346
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.77 E-value=1.5e-08 Score=84.53 Aligned_cols=57 Identities=40% Similarity=0.477 Sum_probs=47.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~ 173 (363)
+..+++++|.||+|||||+|+|.+.....++..+++|+........ ..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 3458999999999999999999998766678889999987665442 56999999994
No 347
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.76 E-value=2.1e-08 Score=92.29 Aligned_cols=60 Identities=35% Similarity=0.506 Sum_probs=49.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~ 176 (363)
+..+|+++|.||||||||+|+|.+.+...++..+++|+....... +.++.++||||+...
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~ 179 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL---GKGLELLDTPGILWP 179 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe---CCcEEEEECCCcCCC
Confidence 345899999999999999999999988778999999998754333 246899999998543
No 348
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.75 E-value=1.3e-08 Score=87.85 Aligned_cols=56 Identities=41% Similarity=0.472 Sum_probs=45.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccc--------ceecCCCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKL--------SIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~--------~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~ 173 (363)
...++++|.+|||||||+|+|.+... ..++..++||++........ .+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 35899999999999999999997542 34678889999887665532 5799999995
No 349
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.75 E-value=3.8e-07 Score=83.90 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=82.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceec----CCCC---ce--EEEEEEEEeCCC--eeEEEEeCCCCchh-----hhh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT----NKPQ---TT--RHRILGICSGPE--YQMILYDTPGIIEK-----KIH 179 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~----~~~~---~t--~~~~~~~~~~~~--~~i~l~DtpG~~~~-----~~~ 179 (363)
..|.++|.+|.|||||+|.|++....... ..+. .| .......+..++ ..++++||||+.+. .+.
T Consensus 24 f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we 103 (373)
T COG5019 24 FTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWE 103 (373)
T ss_pred eEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHH
Confidence 48999999999999999999987432110 1111 11 122222233333 56889999998652 122
Q ss_pred hHHHHHHHHHHhhc--------------cccceEEEEeeCC-CCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH
Q 017937 180 MLDSMMMKNVRSAG--------------INADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (363)
Q Consensus 180 ~~~~~~~~~~~~~~--------------~~ad~ii~VvD~~-~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~ 244 (363)
.+......+...++ ...++++|.+..+ ++....+-..+..+. ..+.+|-|+-|+|.....++
T Consensus 104 ~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls---~~vNlIPVI~KaD~lT~~El 180 (373)
T COG5019 104 PIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLS---KRVNLIPVIAKADTLTDDEL 180 (373)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHh---cccCeeeeeeccccCCHHHH
Confidence 22222222222221 2468999999876 444666655554433 46889999999999998887
Q ss_pred HHHHHHHH
Q 017937 245 AKKLEWYE 252 (363)
Q Consensus 245 ~~~~~~~~ 252 (363)
......+.
T Consensus 181 ~~~K~~I~ 188 (373)
T COG5019 181 AEFKERIR 188 (373)
T ss_pred HHHHHHHH
Confidence 76655444
No 350
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.73 E-value=3e-08 Score=90.74 Aligned_cols=60 Identities=38% Similarity=0.519 Sum_probs=49.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~ 176 (363)
+..+++++|.||||||||+|+|.+.+...++..+++|+........ ..+.++||||+...
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS---DGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC---CCEEEEECCCcccC
Confidence 3458999999999999999999998877788999999987544432 36899999998543
No 351
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.73 E-value=3.6e-08 Score=83.66 Aligned_cols=57 Identities=44% Similarity=0.542 Sum_probs=47.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~ 173 (363)
...+++++|.+|+|||||+|+|.+..+..++..+++|.......+. ..+.++||||+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3458999999999999999999998876678888988876654443 56899999996
No 352
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.72 E-value=5.8e-08 Score=86.00 Aligned_cols=90 Identities=20% Similarity=0.139 Sum_probs=63.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcc--ccceecCCCCceEEEEEEEEeC---CCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ--KLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~--~~~~~~~~~~~t~~~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
.|+|+|.+++|||+|+|+|++. .+........+|+......... .+..+.++||||+.+..... ...+....
T Consensus 9 vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~---~~~~~~~~ 85 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE---FEDDARLF 85 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc---hhhhhHHH
Confidence 7999999999999999999999 7776666778888766655544 36789999999985432211 01112222
Q ss_pred hcc--ccceEEEEeeCCCCC
Q 017937 192 AGI--NADCIVVLVDACKAP 209 (363)
Q Consensus 192 ~~~--~ad~ii~VvD~~~~~ 209 (363)
++. -++++||.++.....
T Consensus 86 ~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 86 ALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHhCEEEEeccCcccH
Confidence 233 489999999876443
No 353
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.70 E-value=4.1e-08 Score=92.02 Aligned_cols=90 Identities=21% Similarity=0.158 Sum_probs=67.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC-----------------eeEEEEeCCCCchhhh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~l~DtpG~~~~~~ 178 (363)
.+++|+|.||+|||||+|+|++.....+..+|.+|..+..+.+...+ ..+.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 47999999999999999999998863467889998887776655433 3689999999876432
Q ss_pred hhHHHHHHHHHHhhccccceEEEEeeCCC
Q 017937 179 HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~ 207 (363)
..- .+-..+...++.+|++++|+|+..
T Consensus 83 ~g~--Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGE--GLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ccc--CcchHHHHHHHhCCEEEEEEeCCC
Confidence 211 111234455789999999999853
No 354
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.69 E-value=2.6e-08 Score=94.48 Aligned_cols=131 Identities=22% Similarity=0.175 Sum_probs=75.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc-----cceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK-----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~-----~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 190 (363)
..|.++|.+|||||||+|+|++.. ...++..|++|+........ ..+.++||||+.... .+...+.....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~---~~~~l~DtPG~~~~~--~~~~~l~~~~l 229 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD---DGHSLYDTPGIINSH--QMAHYLDKKDL 229 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC---CCCEEEECCCCCChh--HhhhhcCHHHH
Confidence 489999999999999999999853 24578899999987654442 346799999985431 12111111111
Q ss_pred hh---ccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHh
Q 017937 191 SA---GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK 253 (363)
Q Consensus 191 ~~---~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~ 253 (363)
.. -+....+.+.++..+...--.-.....+.. .+..+.+.++|.+.......+...+.+.+
T Consensus 230 ~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~--~~~~~~~~~~~~~~~h~t~~~~a~~~~~~ 293 (360)
T TIGR03597 230 KYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKG--EKTSFTFYVSNELNIHRTKLENADELYNK 293 (360)
T ss_pred hhcCCCCccCceEEEeCCCCEEEEceEEEEEEecC--CceEEEEEccCCceeEeechhhhHHHHHh
Confidence 11 234566777777654321100001111221 34556777777776654444433444443
No 355
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=8.2e-09 Score=95.27 Aligned_cols=118 Identities=18% Similarity=0.160 Sum_probs=86.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhccccc-----------------eecCCCCceEEEEEEEEeCCCeeEEEEeCCCCc
Q 017937 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLS-----------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGII 174 (363)
Q Consensus 112 ~~~~~~i~i~G~~~~GKSSLln~l~~~~~~-----------------~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~ 174 (363)
..+-.+|+++.+-.+||||...+++.-... ......|.|.......++|++++++++||||++
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv 113 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV 113 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence 335558999999999999999998642211 122334556666666789999999999999987
Q ss_pred hhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
+.... +.++++-.|+++.|+|++.+.+.+.-.+++.... .+.|-+..+||+|...
T Consensus 114 df~le---------verclrvldgavav~dasagve~qtltvwrqadk--~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 114 DFRLE---------VERCLRVLDGAVAVFDASAGVEAQTLTVWRQADK--FKIPAHCFINKMDKLA 168 (753)
T ss_pred eEEEE---------HHHHHHHhcCeEEEEeccCCcccceeeeehhccc--cCCchhhhhhhhhhhh
Confidence 64422 3345677899999999998887665555444444 6899999999999864
No 356
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.66 E-value=6.5e-08 Score=83.02 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=80.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
.+|.++|.+|+||||+-..+..+..+.-...+|.|.+.....+.. ++.-+.+||+.|. +.+ +...+...-...++
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgq--e~f--men~~~~q~d~iF~ 80 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ--EEF--MENYLSSQEDNIFR 80 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCc--HHH--HHHHHhhcchhhhe
Confidence 389999999999999877766555444456777777766665543 3467899999994 321 22222222233478
Q ss_pred ccceEEEEeeCCCCCchH----HHHHHHhccccCCCCCEEEEEcCCCCCChh
Q 017937 195 NADCIVVLVDACKAPERI----DEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~----~~~~~~~~~~~~~~~piilV~NK~Dl~~~~ 242 (363)
+.+++++|+|+....-.. ....++.+.+..+...+++.+.|.|+....
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 999999999998654111 112223333333667789999999998543
No 357
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=6.6e-07 Score=82.90 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=82.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccccee------cCCCCceEE--EEEEEEeCCC--eeEEEEeCCCCchh-----hhhh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV------TNKPQTTRH--RILGICSGPE--YQMILYDTPGIIEK-----KIHM 180 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~------~~~~~~t~~--~~~~~~~~~~--~~i~l~DtpG~~~~-----~~~~ 180 (363)
..+.++|.+|.|||||+|.|++..+... ...+..|.. .....+.-++ .+++++||||+.+. .+..
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~p 101 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRP 101 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchh
Confidence 4799999999999999999988754321 112212221 1122222223 56789999998652 1122
Q ss_pred HHHHHHHHHHhh-----------cc--ccceEEEEeeCCC-CCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHH
Q 017937 181 LDSMMMKNVRSA-----------GI--NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (363)
Q Consensus 181 ~~~~~~~~~~~~-----------~~--~ad~ii~VvD~~~-~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~ 246 (363)
+......+...| .. ..++++|.+..+. +....+-.++..+. ..+.+|-|+-|+|...+.++..
T Consensus 102 i~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~---~~vNiIPVI~KaD~lT~~El~~ 178 (366)
T KOG2655|consen 102 IVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS---KKVNLIPVIAKADTLTKDELNQ 178 (366)
T ss_pred hhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh---ccccccceeeccccCCHHHHHH
Confidence 222222222222 22 5789999998764 45666665555443 5688999999999999888766
Q ss_pred HHHHHH
Q 017937 247 KLEWYE 252 (363)
Q Consensus 247 ~~~~~~ 252 (363)
....+.
T Consensus 179 ~K~~I~ 184 (366)
T KOG2655|consen 179 FKKRIR 184 (366)
T ss_pred HHHHHH
Confidence 655443
No 358
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.58 E-value=1e-07 Score=88.92 Aligned_cols=147 Identities=24% Similarity=0.189 Sum_probs=100.3
Q ss_pred HHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccC
Q 017937 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (363)
Q Consensus 187 ~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk 266 (363)
+...+.+..+|+|+.|+|+.++.......+.+... +.|.++|+||+|+.+......+...+....+. ..+.+|++
T Consensus 26 ~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~----~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~-~~~~v~~~ 100 (322)
T COG1161 26 RQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK----EKPKLLVLNKADLAPKEVTKKWKKYFKKEEGI-KPIFVSAK 100 (322)
T ss_pred HHHHHhcccCCEEEEEEeccccccccCccHHHHHc----cCCcEEEEehhhcCCHHHHHHHHHHHHhcCCC-ccEEEEee
Confidence 44566689999999999999988666556666554 36669999999999988877777777765433 46788889
Q ss_pred CCCCHHHHHHHHHhhC--------CCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec-----
Q 017937 267 YGHGVEDIRDWILTKL--------PLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR----- 333 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l--------~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~----- 333 (363)
.+.+...+...+.... ..+-.. . ...++..+.+|+||||++|.+..+..
T Consensus 101 ~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~--------~----------~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~ 162 (322)
T COG1161 101 SRQGGKKIRKALEKLSEEKIKRLKKKGLLK--------R----------KIRVGVVGYPNVGKSTLINRLLGKKVAKTSN 162 (322)
T ss_pred cccCccchHHHHHHHHHHHHHHHhhcCCCc--------c----------ceEEEEEcCCCCcHHHHHHHHhcccceeeCC
Confidence 8888877774333221 111000 0 01255678999999999999988765
Q ss_pred -CCCeeEEEEEEEEeeCCceeEEecCCC
Q 017937 334 -PTAKDFIQVEIVVEKNSQKIILIGKVS 360 (363)
Q Consensus 334 -~~~~~~i~~~i~~~~~~q~~ivig~~G 360 (363)
||.+..+ +.|. -.....++|++|
T Consensus 163 ~PG~Tk~~-q~i~---~~~~i~LlDtPG 186 (322)
T COG1161 163 RPGTTKGI-QWIK---LDDGIYLLDTPG 186 (322)
T ss_pred CCceecce-EEEE---cCCCeEEecCCC
Confidence 4322222 2332 334478999998
No 359
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.58 E-value=1.2e-06 Score=75.66 Aligned_cols=132 Identities=17% Similarity=0.256 Sum_probs=78.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcccccee-------cCCCCceEEEEEE-EEeCCC--eeEEEEeCCCCchh-----hhhhH
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-------TNKPQTTRHRILG-ICSGPE--YQMILYDTPGIIEK-----KIHML 181 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~-------~~~~~~t~~~~~~-~~~~~~--~~i~l~DtpG~~~~-----~~~~~ 181 (363)
+|+++|.+|.|||||+|.|........ ...+.|+.-.... .+.-++ .+++++||||+.+. ....+
T Consensus 48 NIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI 127 (336)
T KOG1547|consen 48 NIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPI 127 (336)
T ss_pred EEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHH
Confidence 899999999999999999986554321 1334444433222 233333 46889999998652 12222
Q ss_pred HHHHHHHHHhhc--------------cccceEEEEeeCCC-CCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHH
Q 017937 182 DSMMMKNVRSAG--------------INADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (363)
Q Consensus 182 ~~~~~~~~~~~~--------------~~ad~ii~VvD~~~-~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~ 246 (363)
.....++...|+ ...++++|.+..+. ....++..+++.+. .-..++-|+-|+|-+.-++...
T Consensus 128 ~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt---~vvNvvPVIakaDtlTleEr~~ 204 (336)
T KOG1547|consen 128 EKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLT---EVVNVVPVIAKADTLTLEERSA 204 (336)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHh---hhheeeeeEeecccccHHHHHH
Confidence 222223322222 24578888888763 33555554444332 3367888899999886655554
Q ss_pred HHHHH
Q 017937 247 KLEWY 251 (363)
Q Consensus 247 ~~~~~ 251 (363)
+.+.+
T Consensus 205 FkqrI 209 (336)
T KOG1547|consen 205 FKQRI 209 (336)
T ss_pred HHHHH
Confidence 44443
No 360
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.56 E-value=1.8e-07 Score=78.10 Aligned_cols=56 Identities=36% Similarity=0.559 Sum_probs=43.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~ 173 (363)
..+++++|.+|+|||||+|+|.+.....++..+++|+....... +..+.+|||||+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI---TSKIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc---CCCEEEEECcCC
Confidence 45899999999999999999998776666778888766432222 237999999994
No 361
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.54 E-value=2.6e-06 Score=76.78 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=92.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe----CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS----GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~----~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
.|.++|..++|||||+.+|.|.+- .+.+.......-.+. .+-.++.+|-.-| +.....+ ...+..+
T Consensus 54 ~VlvlGdn~sGKtsLi~klqg~e~----~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDG--d~~h~~L----Lk~al~a 123 (473)
T KOG3905|consen 54 NVLVLGDNGSGKTSLISKLQGSET----VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDG--DLYHKGL----LKFALPA 123 (473)
T ss_pred eEEEEccCCCchhHHHHHhhcccc----cCCCCCcceEEEecccccchhhhhcceEEecC--chhhhhH----Hhhcccc
Confidence 799999999999999999998762 233333222222221 2234666776666 2222222 1222222
Q ss_pred cccc-ceEEEEeeCCCCCc---hHHHH----------------------------HHHhcc-----------c-------
Q 017937 193 GINA-DCIVVLVDACKAPE---RIDEI----------------------------LEEGVG-----------D------- 222 (363)
Q Consensus 193 ~~~a-d~ii~VvD~~~~~~---~~~~~----------------------------~~~~~~-----------~------- 222 (363)
-.-+ -++|+++|.++++. ++..| |.+++. .
T Consensus 124 ts~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~ 203 (473)
T KOG3905|consen 124 TSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSS 203 (473)
T ss_pred cCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCc
Confidence 2223 36788889988852 11111 111110 0
Q ss_pred ---------------cCCCCCEEEEEcCCCCCCh---------hH---HHHHHHHHHhcCCCCcEEEcccCCCCCHHHHH
Q 017937 223 ---------------HKDKLPILLVLNKKDLIKP---------GE---IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (363)
Q Consensus 223 ---------------~~~~~piilV~NK~Dl~~~---------~~---~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~ 275 (363)
...++|+++|++|||.+.- +. +...+..++...+. ..|.+|+|...|++-|.
T Consensus 204 ~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidlly 282 (473)
T KOG3905|consen 204 ADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLY 282 (473)
T ss_pred cccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-eeEEeecccccchHHHH
Confidence 0146899999999998421 11 12222333333343 67999999999999999
Q ss_pred HHHHhhCCC
Q 017937 276 DWILTKLPL 284 (363)
Q Consensus 276 ~~i~~~l~~ 284 (363)
.+|..+...
T Consensus 283 KYivhr~yG 291 (473)
T KOG3905|consen 283 KYIVHRSYG 291 (473)
T ss_pred HHHHHHhcC
Confidence 999998754
No 362
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=9e-07 Score=86.92 Aligned_cols=145 Identities=26% Similarity=0.300 Sum_probs=82.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEE---------------------------------------
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--------------------------------------- 154 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~--------------------------------------- 154 (363)
++.+|+|.|..++||||++|+++..+... +....+|....
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP-~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLP-SGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCc-ccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 45599999999999999999998766432 11111111100
Q ss_pred -----EEEEeCCC------eeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhcccc
Q 017937 155 -----LGICSGPE------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH 223 (363)
Q Consensus 155 -----~~~~~~~~------~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~ 223 (363)
..++..++ ..+.++|.||+.-.. . ....+-....++|++|||+.+.+........+......
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s--e----~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~- 259 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS--E----LTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE- 259 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCch--h----hhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc-
Confidence 00111111 257899999973221 1 11223344679999999999987665444444433332
Q ss_pred CCCCCEEEEEcCCCCCChh--HHHHHHHHHHhc------CCCCcEEEcccCC
Q 017937 224 KDKLPILLVLNKKDLIKPG--EIAKKLEWYEKF------TDVDEVIPVSAKY 267 (363)
Q Consensus 224 ~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~------~~~~~i~~vSAk~ 267 (363)
.+..++|+-||+|....+ -.+.+..++... .-...+|.|||+.
T Consensus 260 -~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 260 -EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred -cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 345577777899986432 122222221111 1123689999773
No 363
>PRK12289 GTPase RsgA; Reviewed
Probab=98.51 E-value=1.5e-07 Score=88.53 Aligned_cols=56 Identities=36% Similarity=0.352 Sum_probs=42.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCC-------ceEEEEEEEEeCCCeeEEEEeCCCCch
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-------TTRHRILGICSGPEYQMILYDTPGIIE 175 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~~i~l~DtpG~~~ 175 (363)
.++|+|.+|||||||+|+|++.....+...++ ||++........+ ..++||||+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence 58999999999999999999877655555555 7777644433322 27999999754
No 364
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.51 E-value=1.6e-07 Score=74.68 Aligned_cols=113 Identities=21% Similarity=0.160 Sum_probs=66.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCC-ceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
+|+++|..|+|||+|+.++....+. ..+. .|.. +..+| ..+.+.
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~~---~~~~~~t~~------------~~~~~--------------------~~~~~s 46 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPFD---YVPTVFTIG------------IDVYD--------------------PTSYES 46 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCcc---ccCceehhh------------hhhcc--------------------ccccCC
Confidence 7999999999999999999765543 1111 1111 11111 112567
Q ss_pred cceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHH
Q 017937 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (363)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~ 272 (363)
++.++.|++..........|..........+.|.++++||.|+........ ... .+++++||++|.|+.
T Consensus 47 ~~~~~~v~~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~---~~~-----~~~~~~s~~~~~~~~ 115 (124)
T smart00010 47 FDVVLQCWRVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLEEERQVAT---EEG-----LEFAETSAKTPEEGE 115 (124)
T ss_pred CCEEEEEEEccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhHhhCcCCH---HHH-----HHHHHHhCCCcchhh
Confidence 788888888765432111133333322235688999999999843222111 111 145678999999984
No 365
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.51 E-value=6.5e-07 Score=82.06 Aligned_cols=162 Identities=19% Similarity=0.256 Sum_probs=96.3
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhccccce------------------------------------ecCCCCce--EEE
Q 017937 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSI------------------------------------VTNKPQTT--RHR 153 (363)
Q Consensus 112 ~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~------------------------------------~~~~~~~t--~~~ 153 (363)
+.-..+|+++|...+|||||+--|....... +-++|... .-.
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 3445699999999999999987765432110 00111100 001
Q ss_pred EEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEE
Q 017937 154 ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVL 233 (363)
Q Consensus 154 ~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~ 233 (363)
...++.....-++|+|.+|+ +.+-...- +-..-...|..++++-+..+.--.....+.+.-. ..+|+++|.
T Consensus 210 WvkIce~saKviTFIDLAGH--EkYLKTTv-----FGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALa--L~VPVfvVV 280 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGH--EKYLKTTV-----FGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALA--LHVPVFVVV 280 (641)
T ss_pred ceeeccccceeEEEEeccch--hhhhheee-----eccccCCCCceEEEecccccceeccHHhhhhhhh--hcCcEEEEE
Confidence 12223333456889999995 33210000 0011245788899998877663333333333322 679999999
Q ss_pred cCCCCCChhHHHHHHHHHHhcC----------------------------CCCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 234 NKKDLIKPGEIAKKLEWYEKFT----------------------------DVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 234 NK~Dl~~~~~~~~~~~~~~~~~----------------------------~~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
+|+|+.+.+-+++....+.+.. ..+|+|.+|..+|.|++-|..+| ..+.
T Consensus 281 TKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL-Nlls 357 (641)
T KOG0463|consen 281 TKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL-NLLS 357 (641)
T ss_pred EeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH-hhcC
Confidence 9999998887766544433211 23689999999999997665544 4444
No 366
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.48 E-value=6.2e-07 Score=74.99 Aligned_cols=71 Identities=21% Similarity=0.311 Sum_probs=42.9
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchH--HHHHHHhccccCCCCCEEEEEcCCCC
Q 017937 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI--DEILEEGVGDHKDKLPILLVLNKKDL 238 (363)
Q Consensus 162 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~--~~~~~~~~~~~~~~~piilV~NK~Dl 238 (363)
..+..++||||..+ +...+...+...........|.+++++|+.+..... ...+...+.. -=++|+||+|+
T Consensus 86 ~~d~I~IEt~G~~~-p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-----ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLAD-PGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-----ADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCC-HHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-----CCEEEEecccC
Confidence 46789999999853 333333333334445566789999999986533221 1222333322 12679999996
No 367
>PRK12288 GTPase RsgA; Reviewed
Probab=98.48 E-value=3e-07 Score=86.41 Aligned_cols=57 Identities=28% Similarity=0.310 Sum_probs=40.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCC-------CceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTTRHRILGICSGPEYQMILYDTPGIIEK 176 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~i~l~DtpG~~~~ 176 (363)
.++|+|.+|||||||+|+|++.....+...+ .||+......+..+ ..++||||+...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 5899999999999999999987655444433 25655544444322 359999998543
No 368
>PRK13796 GTPase YqeH; Provisional
Probab=98.46 E-value=2.8e-07 Score=87.53 Aligned_cols=56 Identities=43% Similarity=0.514 Sum_probs=44.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc-----cceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK-----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII 174 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~-----~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~ 174 (363)
..+.++|.+|||||||+|+|++.. ...++..||||+......+.. ...++||||+.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD---GSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC---CcEEEECCCcc
Confidence 479999999999999999998542 334688999999876654432 25799999985
No 369
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.46 E-value=2.9e-06 Score=82.50 Aligned_cols=62 Identities=24% Similarity=0.249 Sum_probs=43.3
Q ss_pred CCCEEEEEcCCCCCCh---------hH---HHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhCCCCCCC
Q 017937 226 KLPILLVLNKKDLIKP---------GE---IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAY 288 (363)
Q Consensus 226 ~~piilV~NK~Dl~~~---------~~---~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~ 288 (363)
++|++||++|+|.... .. +...+..++...+. .+|.+|++...|++-|+.+|..++...+..
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~h~l~~~~f~ 269 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYILHRLYGFPFK 269 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHHHHhccCCCC
Confidence 4799999999997531 11 12223333333343 688899999999999999999988765543
No 370
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.41 E-value=7.6e-06 Score=76.14 Aligned_cols=149 Identities=15% Similarity=0.255 Sum_probs=81.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc------ccceecCCCCc-----------eEE--EEEEE----------------Ee
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT-----------TRH--RILGI----------------CS 159 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~------~~~~~~~~~~~-----------t~~--~~~~~----------------~~ 159 (363)
...|+++|++|+||||++..|.+. ++..+...+.. .+. .+... ..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 347999999999999999887532 22222111100 000 01100 01
Q ss_pred CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh-----ccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEc
Q 017937 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA-----GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 234 (363)
Q Consensus 160 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~-----~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~N 234 (363)
..++.+.++||||..+.....+.+ + ..+... -...+.+++|+|++.+...... .....+. -.+.-+|+|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~e-L-~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~-a~~f~~~---~~~~giIlT 267 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEE-L-KKIKRVIKKADPDAPHEVLLVLDATTGQNALSQ-AKAFHEA---VGLTGIILT 267 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHH-H-HHHHHHHhhhcCCCCceEEEEEECCCChHHHHH-HHHHHhh---CCCCEEEEE
Confidence 245689999999975433222221 1 112211 1346789999999976544432 2222221 235578999
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHH
Q 017937 235 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (363)
Q Consensus 235 K~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~ 275 (363)
|.|..... -......... ..|+..++ +|+++++|.
T Consensus 268 KlD~t~~~--G~~l~~~~~~--~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 268 KLDGTAKG--GVVFAIADEL--GIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCCCc--cHHHHHHHHH--CCCEEEEe--CCCChhhCc
Confidence 99965332 1122222222 23788887 889887754
No 371
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.41 E-value=4.7e-07 Score=81.28 Aligned_cols=57 Identities=30% Similarity=0.265 Sum_probs=40.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccccee---cC----CCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV---TN----KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~---~~----~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~ 176 (363)
..++++|.+|||||||+|+|.+.....+ +. ..+||++.....+ .+ -.++||||+...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~---~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HG---GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CC---cEEEeCCCcccc
Confidence 3799999999999999999998654322 22 2336766554444 22 379999998653
No 372
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.33 E-value=6.8e-07 Score=74.18 Aligned_cols=57 Identities=30% Similarity=0.370 Sum_probs=34.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccce---ecC----CCCceEEEEEEEEeCCCeeEEEEeCCCCch
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSI---VTN----KPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~---~~~----~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~ 175 (363)
..++++|.+|||||||+|+|.+..... ++. -..||+......+. ....++||||+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~---~g~~iIDTPGf~~ 99 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP---DGGYIIDTPGFRS 99 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET---TSEEEECSHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC---CCcEEEECCCCCc
Confidence 479999999999999999999874221 222 22344444333332 2468999999754
No 373
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.32 E-value=4.5e-07 Score=83.62 Aligned_cols=63 Identities=29% Similarity=0.399 Sum_probs=50.7
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh
Q 017937 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (363)
Q Consensus 112 ~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~ 177 (363)
+.+..-|+++|.||+||||++|.|...+++.+.+.+|.|+.-.+..+ -.+|.||||||++...
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL---mkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL---MKRIFLIDCPGVVYPS 366 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH---HhceeEecCCCccCCC
Confidence 44566899999999999999999999999999999999875332222 1578999999986543
No 374
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.30 E-value=7.1e-06 Score=78.71 Aligned_cols=119 Identities=19% Similarity=0.257 Sum_probs=67.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHh------ccccceecCCCC-----------ceEE--EEEEEEe----------------
Q 017937 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQ-----------TTRH--RILGICS---------------- 159 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~------~~~~~~~~~~~~-----------~t~~--~~~~~~~---------------- 159 (363)
+..|+++|.+||||||++..|. |.++..++..+. ..+. .......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4479999999999999999885 444433332221 1111 1111111
Q ss_pred CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC
Q 017937 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (363)
Q Consensus 160 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 239 (363)
..++.+.++||||..+.... +-..+.. +.. ...+|.+++|+|++.+.... ... ..+.. .-.+--+|+||.|-.
T Consensus 180 ~~~~DvViIDTaGr~~~d~~-lm~El~~-i~~-~~~p~e~lLVlda~~Gq~a~-~~a-~~F~~--~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDS-LFEEMLQ-VAE-AIQPDNIIFVMDGSIGQAAE-AQA-KAFKD--SVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHH-HHHHHHH-Hhh-hcCCcEEEEEeccccChhHH-HHH-HHHHh--ccCCcEEEEECccCC
Confidence 12578999999996443222 2222211 111 34678899999998764332 222 22222 224668889999975
Q ss_pred C
Q 017937 240 K 240 (363)
Q Consensus 240 ~ 240 (363)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 3
No 375
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.29 E-value=2.8e-05 Score=70.83 Aligned_cols=102 Identities=16% Similarity=0.226 Sum_probs=57.0
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc-----cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcC
Q 017937 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG-----INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (363)
Q Consensus 161 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~-----~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK 235 (363)
.++.+.++||||..+.....+ ..+ +.+.... ..+|.+++|+|++.+..... ......+. -.+.-+|+||
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~-~el-~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~-~~~~f~~~---~~~~g~IlTK 226 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLM-DEL-KKIKRVIKKVDKDAPDEVLLVLDATTGQNALE-QAKVFNEA---VGLTGIILTK 226 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHH-HHH-HHHHHHHhcccCCCCceEEEEEECCCCHHHHH-HHHHHHhh---CCCCEEEEEc
Confidence 457899999999654322211 111 1222222 24899999999986543332 23333322 1356889999
Q ss_pred CCCCChh-HHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHH
Q 017937 236 KDLIKPG-EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (363)
Q Consensus 236 ~Dl~~~~-~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~ 275 (363)
.|..... ..-.... .. + .|+..++ +|++++++.
T Consensus 227 lDe~~~~G~~l~~~~---~~-~-~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 227 LDGTAKGGIILSIAY---EL-K-LPIKFIG--VGEKIDDLA 260 (272)
T ss_pred cCCCCCccHHHHHHH---HH-C-cCEEEEe--CCCChHhCc
Confidence 9986432 2222222 21 2 3777776 788887754
No 376
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.28 E-value=7.1e-06 Score=76.17 Aligned_cols=154 Identities=21% Similarity=0.370 Sum_probs=91.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc----cceecCCCC-----------ceEEEEEE-----E-Ee---------------
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQ-----------TTRHRILG-----I-CS--------------- 159 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~----~~~~~~~~~-----------~t~~~~~~-----~-~~--------------- 159 (363)
|..++.|.=|+|||||+|.++.+. .+..-+..| .+...... + ++
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 367888999999999999998543 221111110 00000111 0 11
Q ss_pred CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHH---HHHHHhccccCCCCCEEEEEcCC
Q 017937 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID---EILEEGVGDHKDKLPILLVLNKK 236 (363)
Q Consensus 160 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~---~~~~~~~~~~~~~~piilV~NK~ 236 (363)
.+.....++.|.|+.+. ...+............-..|.++-|+|+.+...... .....++.. -=+||+||+
T Consensus 82 ~~~~D~ivIEtTGlA~P-~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-----AD~ivlNK~ 155 (323)
T COG0523 82 RDRPDRLVIETTGLADP-APVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-----ADVIVLNKT 155 (323)
T ss_pred cCCCCEEEEeCCCCCCC-HHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-----CcEEEEecc
Confidence 22356889999998543 222222221112222345688999999987553332 333333322 238999999
Q ss_pred CCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHH
Q 017937 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (363)
Q Consensus 237 Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~ 276 (363)
|+.++..+......+.+..+..+++.+|. .+....+++.
T Consensus 156 Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 156 DLVDAEELEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred cCCCHHHHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 99998887777888888888888998887 3444444443
No 377
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=8e-06 Score=78.61 Aligned_cols=133 Identities=19% Similarity=0.239 Sum_probs=83.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccce-ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
..|+++|+||+|||||+..|+..-... .....|. ...+.+...+++|+.||. +- ..+....+
T Consensus 70 fIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GP-----iTvvsgK~RRiTflEcp~--Dl----------~~miDvaK 132 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGP-----ITVVSGKTRRITFLECPS--DL----------HQMIDVAK 132 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCc-----eEEeecceeEEEEEeChH--HH----------HHHHhHHH
Confidence 367799999999999999987642211 1111111 123445567899999995 21 12233457
Q ss_pred ccceEEEEeeCCCCCchHHHHHHHhccccCCCCC-EEEEEcCCCCCCh-hHHHHHHHH-----HHhcCCCCcEEEcccCC
Q 017937 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKP-GEIAKKLEW-----YEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~-~~~~~~~~~-----~~~~~~~~~i~~vSAk~ 267 (363)
-||++++++|+.-+++-..-.++.++.. .+.| ++-|++..|+... ..+...... +........+|.+|...
T Consensus 133 IaDLVlLlIdgnfGfEMETmEFLnil~~--HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 133 IADLVLLLIDGNFGFEMETMEFLNILIS--HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred hhheeEEEeccccCceehHHHHHHHHhh--cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 7999999999998886666667776665 5555 6778999999743 333332221 12222234677777654
No 378
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.25 E-value=4.6e-06 Score=75.58 Aligned_cols=109 Identities=23% Similarity=0.248 Sum_probs=74.4
Q ss_pred ccccceEEEEeeCCCCCch--HHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHH--HHHHHHhcCCCCcEEEcccCCC
Q 017937 193 GINADCIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK--KLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~--~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~--~~~~~~~~~~~~~i~~vSAk~g 268 (363)
..+.|-+++|+.+.++.-+ ..+.++-.... .++.-+||+||+||.+...... ....+.. .+ ++++.+|++++
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~-~g-y~v~~~s~~~~ 152 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--GGIEPVIVLNKIDLLDDEEAAVKELLREYED-IG-YPVLFVSAKNG 152 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHH--cCCcEEEEEEccccCcchHHHHHHHHHHHHh-CC-eeEEEecCcCc
Confidence 4567788888888776522 22223323333 5677788899999997766552 3333333 23 58899999999
Q ss_pred CCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec
Q 017937 269 HGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR 333 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~ 333 (363)
.|+++|.+++...+.- ..+...|||||++|.+.....
T Consensus 153 ~~~~~l~~~l~~~~sv----------------------------l~GqSGVGKSSLiN~L~p~~~ 189 (301)
T COG1162 153 DGLEELAELLAGKITV----------------------------LLGQSGVGKSTLINALLPELN 189 (301)
T ss_pred ccHHHHHHHhcCCeEE----------------------------EECCCCCcHHHHHHhhCchhh
Confidence 9999999988765431 235778999999998887443
No 379
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.21 E-value=6.6e-07 Score=82.79 Aligned_cols=62 Identities=34% Similarity=0.431 Sum_probs=52.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~ 177 (363)
.++.+|+|+|.|||||||+||+|...+...+...||.|+.......+ ..+.|+|.||++-.+
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld---k~i~llDsPgiv~~~ 311 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD---KKIRLLDSPGIVPPS 311 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc---CCceeccCCceeecC
Confidence 35668999999999999999999999988899999999876554443 679999999986543
No 380
>PRK14974 cell division protein FtsY; Provisional
Probab=98.21 E-value=1e-05 Score=75.64 Aligned_cols=101 Identities=19% Similarity=0.225 Sum_probs=56.2
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCCh
Q 017937 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (363)
Q Consensus 162 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 241 (363)
+..+.++||+|..+.....+.+ + +.+.. ....|.+++|+|++.+.... .....+... -..--+|+||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~e-L-~~i~~-~~~pd~~iLVl~a~~g~d~~-~~a~~f~~~---~~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDE-L-KKIVR-VTKPDLVIFVGDALAGNDAV-EQAREFNEA---VGIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHH-H-HHHHH-hhCCceEEEeeccccchhHH-HHHHHHHhc---CCCCEEEEeeecCCCC
Confidence 4579999999975433222221 1 12222 23578999999997654322 222222222 1235788999998643
Q ss_pred hHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHH
Q 017937 242 GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (363)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~ 275 (363)
.-. ........ ..|+..++ +|++++++.
T Consensus 295 ~G~--~ls~~~~~--~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 GGA--ALSIAYVI--GKPILFLG--VGQGYDDLI 322 (336)
T ss_pred ccH--HHHHHHHH--CcCEEEEe--CCCChhhcc
Confidence 211 11111111 23777776 799998764
No 381
>PRK01889 GTPase RsgA; Reviewed
Probab=98.20 E-value=7.5e-06 Score=77.58 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=58.2
Q ss_pred ccccceEEEEeeCCCCCch-HHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 193 GINADCIVVLVDACKAPER-IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~-~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
+.++|.+++|+++...+.. ..+.++..+.. .+.|.+||+||+||.+... ....++......++++.+||++|.|+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~--~~i~piIVLNK~DL~~~~~--~~~~~~~~~~~g~~Vi~vSa~~g~gl 185 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE--SGAEPVIVLTKADLCEDAE--EKIAEVEALAPGVPVLAVSALDGEGL 185 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH--cCCCEEEEEEChhcCCCHH--HHHHHHHHhCCCCcEEEEECCCCccH
Confidence 5789999999999754433 33344444444 5678899999999986421 12233333233458999999999999
Q ss_pred HHHHHHHH
Q 017937 272 EDIRDWIL 279 (363)
Q Consensus 272 ~eL~~~i~ 279 (363)
++|..+|.
T Consensus 186 ~~L~~~L~ 193 (356)
T PRK01889 186 DVLAAWLS 193 (356)
T ss_pred HHHHHHhh
Confidence 99999874
No 382
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=5e-06 Score=77.08 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=92.4
Q ss_pred CCCCCCcEEEEEcCCCCChHHHHHHHhccccce------------------------e------cCCCCceEEEEEEEEe
Q 017937 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSI------------------------V------TNKPQTTRHRILGICS 159 (363)
Q Consensus 110 ~~~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~------------------------~------~~~~~~t~~~~~~~~~ 159 (363)
.|+....+++++|+..+||||+-..|+...... . ...-+.|...-...+.
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 344566699999999999999876664321110 0 1112334444444555
Q ss_pred CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCc-------hHHHHHHHhccccCCCCCEEEE
Q 017937 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-------RIDEILEEGVGDHKDKLPILLV 232 (363)
Q Consensus 160 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~-------~~~~~~~~~~~~~~~~~piilV 232 (363)
.....+.+.|+||+-. + ..++..-..+||+.++|+.+..+.. -+......+.+.. .-...|++
T Consensus 154 te~~~ftiLDApGHk~--f-------v~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~ 223 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKS--F-------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVL 223 (501)
T ss_pred ecceeEEeeccCcccc--c-------chhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEE
Confidence 6667899999999532 2 2334444678999999999864420 0111111122221 34678999
Q ss_pred EcCCCCCChh----HHHHH----HHHHHhc----CCCCcEEEcccCCCCCHHHHHH
Q 017937 233 LNKKDLIKPG----EIAKK----LEWYEKF----TDVDEVIPVSAKYGHGVEDIRD 276 (363)
Q Consensus 233 ~NK~Dl~~~~----~~~~~----~~~~~~~----~~~~~i~~vSAk~g~gi~eL~~ 276 (363)
+||+|-+..+ .-.+. ...+... .....++++|..+|.++.+..+
T Consensus 224 vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 224 INKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred EEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 9999986321 11111 1222211 1223579999999999988654
No 383
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.19 E-value=1.9e-06 Score=79.82 Aligned_cols=75 Identities=23% Similarity=0.216 Sum_probs=55.6
Q ss_pred HHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCC
Q 017937 183 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV 257 (363)
Q Consensus 183 ~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~ 257 (363)
..+.+.++..+..+|+||.|+|+.+|...-...+.+++.....++..|+|+||+|+++.+.+..+...++..++.
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~pt 208 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPT 208 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCc
Confidence 345566777789999999999999987433333333333222458999999999999999888888888876544
No 384
>PRK00098 GTPase RsgA; Reviewed
Probab=98.18 E-value=5.2e-06 Score=76.80 Aligned_cols=57 Identities=32% Similarity=0.314 Sum_probs=38.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCC-------CceEEEEEEEEeCCCeeEEEEeCCCCch
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTTRHRILGICSGPEYQMILYDTPGIIE 175 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~i~l~DtpG~~~ 175 (363)
..++++|.+|||||||+|+|++.....+.... .||+......... ...++||||+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~---~~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG---GGLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC---CcEEEECCCcCc
Confidence 37999999999999999999986543322222 2555443333322 247899999864
No 385
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.18 E-value=1.6e-05 Score=67.78 Aligned_cols=137 Identities=21% Similarity=0.326 Sum_probs=75.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhc-----cccceecCCCCce----------EEEEEEE--------------------EeC
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG-----QKLSIVTNKPQTT----------RHRILGI--------------------CSG 160 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~-----~~~~~~~~~~~~t----------~~~~~~~--------------------~~~ 160 (363)
|.+++.|..|+|||||+++++. .+........+.. ....... ...
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 4688999999999999999982 2333222222200 0001111 112
Q ss_pred C--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCC
Q 017937 161 P--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKK 236 (363)
Q Consensus 161 ~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~ 236 (363)
. .....++-+.|..+.. .+ . +........-..+.++.|+|+.+.. ......+...+.. -=++|+||+
T Consensus 81 ~~~~~d~IiIE~sG~a~p~--~l-~-~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~-----ADvIvlnK~ 151 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPA--PL-I-LQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF-----ADVIVLNKI 151 (178)
T ss_dssp CHGC-SEEEEEEECSSGGG--GH-H-HHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-G
T ss_pred cCCCcCEEEECCccccccc--hh-h-hccccccccccccceeEEeccccccccccchhhhhhcchh-----cCEEEEecc
Confidence 2 4578899999964432 22 1 1111222234568999999996521 2223334444433 127899999
Q ss_pred CCCChh-HHHHHHHHHHhcCCCCcEE
Q 017937 237 DLIKPG-EIAKKLEWYEKFTDVDEVI 261 (363)
Q Consensus 237 Dl~~~~-~~~~~~~~~~~~~~~~~i~ 261 (363)
|+.+.. .+....+.++...+..+++
T Consensus 152 D~~~~~~~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 152 DLVSDEQKIERVREMIRELNPKAPIV 177 (178)
T ss_dssp GGHHHH--HHHHHHHHHHH-TTSEEE
T ss_pred ccCChhhHHHHHHHHHHHHCCCCEEe
Confidence 999776 3466667777666665654
No 386
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.16 E-value=3.8e-06 Score=76.12 Aligned_cols=60 Identities=30% Similarity=0.355 Sum_probs=39.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccc---eecC----CCCceEEEEEEEEeCCCeeEEEEeCCCCchhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLS---IVTN----KPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~---~~~~----~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~ 177 (363)
....+++|.+|||||||+|+|.+.... .++. ...||++.....+..++ .++||||+....
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 337899999999999999999874322 1222 23456655544443333 589999985543
No 387
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.13 E-value=7e-05 Score=72.05 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=46.1
Q ss_pred eeEEEEeCCCCchhhhhh----HHHHHHHHHHhhccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCC
Q 017937 163 YQMILYDTPGIIEKKIHM----LDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKK 236 (363)
Q Consensus 163 ~~i~l~DtpG~~~~~~~~----~~~~~~~~~~~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~ 236 (363)
.+++++|.||.+..-... .........+.++.+.++||+|+--..-. .+....+...+.. .+...|+|++|.
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP--~GrRTIfVLTKV 489 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDP--HGRRTIFVLTKV 489 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCC--CCCeeEEEEeec
Confidence 368899999985421111 11223455677889999999998533211 1111222222333 678899999999
Q ss_pred CCCC
Q 017937 237 DLIK 240 (363)
Q Consensus 237 Dl~~ 240 (363)
|+..
T Consensus 490 DlAE 493 (980)
T KOG0447|consen 490 DLAE 493 (980)
T ss_pred chhh
Confidence 9864
No 388
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.13 E-value=5.9e-06 Score=74.42 Aligned_cols=64 Identities=38% Similarity=0.434 Sum_probs=49.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc-----ccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~ 178 (363)
...|.|+|.||+|||||+|++... +...+...||.|+.....+.-.....+.++||||....+.
T Consensus 143 ~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I 211 (335)
T KOG2485|consen 143 EYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSI 211 (335)
T ss_pred ceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCC
Confidence 448999999999999999998643 3455788999999876655444556799999999866543
No 389
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.11 E-value=3.9e-05 Score=74.51 Aligned_cols=153 Identities=20% Similarity=0.170 Sum_probs=90.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEE---EEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI---LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.+.++|..++|||.++++++|..+.. ...+++...+ ..........+.+-|.+-. ....+.. .-
T Consensus 427 ~C~V~G~k~~GKs~lL~sflgr~~~~--~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~---~~~~l~~--------ke 493 (625)
T KOG1707|consen 427 QCFVVGPKNCGKSALLQSFLGRSMSD--NNTGTTKPRYAVNSVEVKGQQKYLILREIGED---DQDFLTS--------KE 493 (625)
T ss_pred eEEEEcCCcCchHHHHHHHhcccccc--ccccCCCCceeeeeeeeccccceEEEeecCcc---ccccccC--------cc
Confidence 78899999999999999999977653 2222221111 1112233445666665542 1111100 01
Q ss_pred cccceEEEEeeCCCCCchHHHH-HHHhccccCCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 194 INADCIVVLVDACKAPERIDEI-LEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~-~~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
..||++.+++|++++....... +.+.. ......|+++|+.|+|+....+. .-....+....+..+.+.+|.++...
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~-~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s- 571 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKY-FDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS- 571 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHh-hhccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-
Confidence 5799999999999654222111 11111 12267999999999999643311 00113344444555667788875223
Q ss_pred HHHHHHHHhhCCC
Q 017937 272 EDIRDWILTKLPL 284 (363)
Q Consensus 272 ~eL~~~i~~~l~~ 284 (363)
.++|..|..++..
T Consensus 572 ~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 572 NELFIKLATMAQY 584 (625)
T ss_pred chHHHHHHHhhhC
Confidence 8899999887753
No 390
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.07 E-value=6.9e-06 Score=75.60 Aligned_cols=57 Identities=35% Similarity=0.391 Sum_probs=38.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceec-------CCCCceEEEEEEEEeCCCeeEEEEeCCCCch
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-------NKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~ 175 (363)
..++++|.+|||||||+|+|++.....+. ...++|+.......... ..++||||+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCc
Confidence 47999999999999999999986543221 12235655443333222 36999999843
No 391
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.04 E-value=2.2e-05 Score=75.18 Aligned_cols=79 Identities=23% Similarity=0.203 Sum_probs=58.0
Q ss_pred HHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccC
Q 017937 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (363)
Q Consensus 187 ~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk 266 (363)
++.++.+..+|+||.++|+.++.-.....+..+.......+..+|++||+||..+.....+...+.... .+++..||.
T Consensus 166 RQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~n--i~~vf~SA~ 243 (562)
T KOG1424|consen 166 RQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNN--IPVVFFSAL 243 (562)
T ss_pred HHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcC--ceEEEEecc
Confidence 455677899999999999999863333334444444335578899999999999888777766666533 688888988
Q ss_pred C
Q 017937 267 Y 267 (363)
Q Consensus 267 ~ 267 (363)
.
T Consensus 244 ~ 244 (562)
T KOG1424|consen 244 A 244 (562)
T ss_pred c
Confidence 6
No 392
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=4.7e-05 Score=72.01 Aligned_cols=124 Identities=16% Similarity=0.245 Sum_probs=66.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccc--------cceecCCC----------------CceEEEEEE-------EEeCCC
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQK--------LSIVTNKP----------------QTTRHRILG-------ICSGPE 162 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~--------~~~~~~~~----------------~~t~~~~~~-------~~~~~~ 162 (363)
+...++++|++||||||++.+|...- +..++... +........ .....+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 34589999999999999999886431 11111111 000000000 011245
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccC--C---CCCEEEEEcCCC
Q 017937 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK--D---KLPILLVLNKKD 237 (363)
Q Consensus 163 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~--~---~~piilV~NK~D 237 (363)
..++++||+|..+.... +.+.+ ..+ .....+.-.++|++++.........+..+..... . ..+-=+|+||.|
T Consensus 216 ~DlVLIDTaG~~~~d~~-l~e~L-a~L-~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlD 292 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRT-VSDQI-AML-HGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLD 292 (374)
T ss_pred CCEEEEcCCCCCcccHH-HHHHH-HHH-hccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccc
Confidence 68999999997432211 21111 111 1223455679999998877665555444332210 0 012357789999
Q ss_pred CCC
Q 017937 238 LIK 240 (363)
Q Consensus 238 l~~ 240 (363)
-..
T Consensus 293 Et~ 295 (374)
T PRK14722 293 EAS 295 (374)
T ss_pred cCC
Confidence 764
No 393
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.98 E-value=3.1e-05 Score=69.33 Aligned_cols=143 Identities=18% Similarity=0.293 Sum_probs=77.4
Q ss_pred CCCCCCcEEEEEcCCCCChHHHHHHHhccc----cceecCCCCceEE------------------------EEEEEE---
Q 017937 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQTTRH------------------------RILGIC--- 158 (363)
Q Consensus 110 ~~~~~~~~i~i~G~~~~GKSSLln~l~~~~----~~~~~~~~~~t~~------------------------~~~~~~--- 158 (363)
.+..+-|.-.|.|.-|+|||||+|.++... .+......|...+ .....+
T Consensus 52 ~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~ 131 (391)
T KOG2743|consen 52 SLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDN 131 (391)
T ss_pred CCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecch
Confidence 344567788999999999999999987432 2221111111000 000001
Q ss_pred ----------eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchH-----HHHHHHhcccc
Q 017937 159 ----------SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI-----DEILEEGVGDH 223 (363)
Q Consensus 159 ----------~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~-----~~~~~~~~~~~ 223 (363)
..+.+...++.|.|+.... ......+.+.-...--..|+||-|+|+.+....+ .-.+.+...+.
T Consensus 132 gvraie~lvqkkGkfD~IllETTGlAnPa-Pia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Qi 210 (391)
T KOG2743|consen 132 GVRAIENLVQKKGKFDHILLETTGLANPA-PIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQI 210 (391)
T ss_pred HHHHHHHHHhcCCCcceEEEeccCCCCcH-HHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHH
Confidence 1233567899999985432 2222223333333333569999999996532111 11111111111
Q ss_pred CCCCCEEEEEcCCCCCChhHHHHHHHHHHhcC
Q 017937 224 KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT 255 (363)
Q Consensus 224 ~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~ 255 (363)
...=-+++||.|+...+++....+.+....
T Consensus 211 --A~AD~II~NKtDli~~e~~~~l~q~I~~IN 240 (391)
T KOG2743|consen 211 --ALADRIIMNKTDLVSEEEVKKLRQRIRSIN 240 (391)
T ss_pred --hhhheeeeccccccCHHHHHHHHHHHHHhh
Confidence 111246799999999887776666655433
No 394
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.96 E-value=8.7e-05 Score=69.87 Aligned_cols=155 Identities=18% Similarity=0.231 Sum_probs=85.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc----ccceecCCCCce----------------EEEEEEE----------------
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTT----------------RHRILGI---------------- 157 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~----~~~~~~~~~~~t----------------~~~~~~~---------------- 157 (363)
+-|..++.|.-|+|||||+|+++.. ++.......+.. ...+...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~ 82 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT 82 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence 3457899999999999999999753 222211111100 0011111
Q ss_pred ----Ee-CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCc----------------------
Q 017937 158 ----CS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE---------------------- 210 (363)
Q Consensus 158 ----~~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~---------------------- 210 (363)
.. .......++.|.|+.+. ..+...+........-..|.++.|+|+.+...
T Consensus 83 l~~l~~~~~~~d~IvIEtsG~a~P--~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (341)
T TIGR02475 83 MTKLLARRQRPDHILIETSGLALP--KPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDH 160 (341)
T ss_pred HHHHHhccCCCCEEEEeCCCCCCH--HHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccc
Confidence 00 12356789999997432 22222221101111225688999999974311
Q ss_pred --hHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCC-CCcEEEcccCCCCCHHHHHH
Q 017937 211 --RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD-VDEVIPVSAKYGHGVEDIRD 276 (363)
Q Consensus 211 --~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~-~~~i~~vSAk~g~gi~eL~~ 276 (363)
.....+...+.. -=+||+||+|+.+..++......+....+ ..+++.++ ........++.
T Consensus 161 ~~~~~~~~~~Qi~~-----AD~IvlnK~Dl~~~~~l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 161 ETPLEELFEDQLAC-----ADLVILNKADLLDAAGLARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred cchHHHHHHHHHHh-----CCEEEEeccccCCHHHHHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 001122222222 23889999999998888888888776443 44666654 23345555544
No 395
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=1.2e-05 Score=76.51 Aligned_cols=112 Identities=24% Similarity=0.293 Sum_probs=72.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEE----------------EE---------------EEeCCCeeE
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI----------------LG---------------ICSGPEYQM 165 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~----------------~~---------------~~~~~~~~i 165 (363)
++.++.+...|||||...|.....-+.....|.++..- .. ..+..++-+
T Consensus 21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi 100 (842)
T KOG0469|consen 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI 100 (842)
T ss_pred cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence 68889999999999999998654332223333222110 00 012345679
Q ss_pred EEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC
Q 017937 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (363)
Q Consensus 166 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 239 (363)
+++|.||+++.+ ..+..+++-.|+++.|+|+-++.--+.+.++...-. ..+.-++|+||.|..
T Consensus 101 NLIDSPGHVDFS---------SEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~--ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 101 NLIDSPGHVDFS---------SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA--ERIKPVLVMNKMDRA 163 (842)
T ss_pred EeccCCCcccch---------hhhhheeEeccCcEEEEEccCceEechHHHHHHHHH--hhccceEEeehhhHH
Confidence 999999987643 234456889999999999988874444444433222 233347889999973
No 396
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.92 E-value=6.3e-05 Score=70.07 Aligned_cols=143 Identities=20% Similarity=0.323 Sum_probs=76.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccc----cceecCCCCce----------EEEEEE-----EEeC--------------
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQTT----------RHRILG-----ICSG-------------- 160 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~----~~~~~~~~~~t----------~~~~~~-----~~~~-------------- 160 (363)
+-|..++.|.-|+|||||+|+++... .....+..|.. ...... +++.
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 34578999999999999999998542 22111111110 000111 0000
Q ss_pred ------CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHH--HHHHHhccccCCCCCEEEE
Q 017937 161 ------PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLV 232 (363)
Q Consensus 161 ------~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~--~~~~~~~~~~~~~~piilV 232 (363)
......++.|.|..+ ....+...+........-..+.++.|+|+.+...... ......+.. -=+||
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~-p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-----AD~Iv 156 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMAD-PGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-----ADRIL 156 (318)
T ss_pred HHhccCCCCCEEEEECCCccC-HHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-----CCEEE
Confidence 025678899999743 2222211111111111224588999999975432211 112222221 23789
Q ss_pred EcCCCCCChhHHHHHHHHHHhcCCCCcEEEcc
Q 017937 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (363)
Q Consensus 233 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vS 264 (363)
+||+|+.+.. ......+....+..+++.++
T Consensus 157 lnK~Dl~~~~--~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 157 LTKTDVAGEA--EKLRERLARINARAPVYTVV 186 (318)
T ss_pred EeccccCCHH--HHHHHHHHHhCCCCEEEEec
Confidence 9999998753 45556666666666777654
No 397
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=0.00014 Score=71.19 Aligned_cols=144 Identities=20% Similarity=0.275 Sum_probs=75.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc--------ccceecCCCCce----------E-E--EEEEEE----------eCCC
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ--------KLSIVTNKPQTT----------R-H--RILGIC----------SGPE 162 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~--------~~~~~~~~~~~t----------~-~--~~~~~~----------~~~~ 162 (363)
+...|+|+|.+|+||||++..|... ++..++...... . . ...... ...+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 3458999999999999999887642 222222111000 0 0 001000 1235
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh
Q 017937 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (363)
Q Consensus 163 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~ 242 (363)
+.++|+||||........+ ..+ ..+.... ....++|++++.........+..+. ...+.-+|+||.|....
T Consensus 429 ~DLVLIDTaG~s~~D~~l~-eeL-~~L~aa~--~~a~lLVLpAtss~~Dl~eii~~f~----~~~~~gvILTKlDEt~~- 499 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALA-AQL-NWLRAAR--QVTSLLVLPANAHFSDLDEVVRRFA----HAKPQGVVLTKLDETGR- 499 (559)
T ss_pred CCEEEecCCCcchhhHHHH-HHH-HHHHHhh--cCCcEEEEECCCChhHHHHHHHHHH----hhCCeEEEEecCcCccc-
Confidence 7899999999743322211 111 1122211 2356788888765555444443322 22567899999998532
Q ss_pred HHHHHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 243 EIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 243 ~~~~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
.-..+....... .++..++ +|++|
T Consensus 500 -lG~aLsv~~~~~--LPI~yvt--~GQ~V 523 (559)
T PRK12727 500 -FGSALSVVVDHQ--MPITWVT--DGQRV 523 (559)
T ss_pred -hhHHHHHHHHhC--CCEEEEe--CCCCc
Confidence 223333333321 2555554 56766
No 398
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=4.6e-05 Score=71.94 Aligned_cols=119 Identities=20% Similarity=0.266 Sum_probs=64.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc------ccceecCCCCc--------e-----EEEEEEEE------------e-CCC
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT--------T-----RHRILGIC------------S-GPE 162 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~------~~~~~~~~~~~--------t-----~~~~~~~~------------~-~~~ 162 (363)
...|+++|++||||||++..|... ++..++..+.. + ........ . ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 458999999999999999988531 22222211110 0 00000000 0 114
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 163 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
+.+.|+||||........+.+. .+.. . ....+.+++|+|++.........+..+ .. -..-=+++||.|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL-~~~l-k-~~~PdevlLVLsATtk~~d~~~i~~~F-~~---~~idglI~TKLDET~ 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEM-IETM-G-QVEPDYICLTLSASMKSKDMIEIITNF-KD---IHIDGIVFTKFDETA 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHH-HHHH-h-hcCCCeEEEEECCccChHHHHHHHHHh-cC---CCCCEEEEEcccCCC
Confidence 6899999999644332223221 1111 1 124577899999875544444433332 22 133467899999864
No 399
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.86 E-value=1.1e-05 Score=69.76 Aligned_cols=72 Identities=22% Similarity=0.202 Sum_probs=41.5
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 162 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
+..+.++||||........+ ..+ +.+.... ..+-+++|++++....... .+...... .+ +-=++++|.|-..
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~-~el-~~~~~~~-~~~~~~LVlsa~~~~~~~~-~~~~~~~~--~~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELL-EEL-KKLLEAL-NPDEVHLVLSATMGQEDLE-QALAFYEA--FG-IDGLILTKLDETA 154 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHH-HHH-HHHHHHH-SSSEEEEEEEGGGGGHHHH-HHHHHHHH--SS-TCEEEEESTTSSS
T ss_pred CCCEEEEecCCcchhhHHHH-HHH-HHHhhhc-CCccceEEEecccChHHHH-HHHHHhhc--cc-CceEEEEeecCCC
Confidence 46799999999644332222 222 2222222 6778999999987655444 33333332 12 3356799999864
No 400
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.86 E-value=0.00012 Score=68.20 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=49.7
Q ss_pred EEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC-----chHHHH-------HHHhccc-
Q 017937 156 GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-----ERIDEI-------LEEGVGD- 222 (363)
Q Consensus 156 ~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-----~~~~~~-------~~~~~~~- 222 (363)
..+..++..+.++|.+|+..+. +.|..++.++++||||++.+.-. ...... +...+..
T Consensus 188 ~~F~~k~~~f~~~DvGGQRseR---------rKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 188 VEFTIKGLKFRMFDVGGQRSER---------KKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred EEEEeCCCceEEEeCCCcHHHh---------hhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 3455666789999999953332 44666799999999999987532 111111 1111111
Q ss_pred cCCCCCEEEEEcCCCCCC
Q 017937 223 HKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 223 ~~~~~piilV~NK~Dl~~ 240 (363)
...+.++|+.+||.||..
T Consensus 259 ~F~~tsiiLFLNK~DLFe 276 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFE 276 (354)
T ss_pred ccccCcEEEEeecHHHHH
Confidence 125789999999999964
No 401
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=8.2e-05 Score=65.95 Aligned_cols=132 Identities=15% Similarity=0.179 Sum_probs=77.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccccee---cCCCCceEEEEEEEE--eCCCeeEEEEeCCCCchh-----hhhhHHHH
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV---TNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEK-----KIHMLDSM 184 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~---~~~~~~t~~~~~~~~--~~~~~~i~l~DtpG~~~~-----~~~~~~~~ 184 (363)
+.+|..+|.+|.|||||++.|.+.++... ...|..........+ ..-..++.++||.|+.+. ++..+-..
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 34899999999999999999999887421 111111111111111 122357899999998652 22222111
Q ss_pred HH-------------HHHHhhcc--ccceEEEEeeCC-CCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHH
Q 017937 185 MM-------------KNVRSAGI--NADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (363)
Q Consensus 185 ~~-------------~~~~~~~~--~ad~ii~VvD~~-~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~ 248 (363)
.. ++....+. ..++++|.+..+ ++....+......+. .++.+|-|+-|.|-....++....
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld---skVNIIPvIAKaDtisK~eL~~FK 198 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD---SKVNIIPVIAKADTISKEELKRFK 198 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh---hhhhhHHHHHHhhhhhHHHHHHHH
Confidence 11 11112222 356788888766 344555544444433 467888899999998887776544
Q ss_pred H
Q 017937 249 E 249 (363)
Q Consensus 249 ~ 249 (363)
.
T Consensus 199 ~ 199 (406)
T KOG3859|consen 199 I 199 (406)
T ss_pred H
Confidence 3
No 402
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.85 E-value=5.1e-05 Score=82.58 Aligned_cols=122 Identities=24% Similarity=0.252 Sum_probs=71.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecC-------CCCceEEEEEEEEeCCCeeEEEEeCCCCchh------hhhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPEYQMILYDTPGIIEK------KIHM 180 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~------~~~~ 180 (363)
.-|=-+|+|++|+||||++++. |-.+..... ..+.|+++. ..+ ..+-+++||+|..-. ....
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~-wwf---~~~avliDtaG~y~~~~~~~~~~~~ 184 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCD-WWF---TDEAVLIDTAGRYTTQDSDPEEDAA 184 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccc-eEe---cCCEEEEcCCCccccCCCcccccHH
Confidence 3456899999999999999986 544432111 112233211 111 145679999994321 1111
Q ss_pred HHHHHHHHHHhh--ccccceEEEEeeCCCCCc-----------hHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 181 LDSMMMKNVRSA--GINADCIVVLVDACKAPE-----------RIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 181 ~~~~~~~~~~~~--~~~ad~ii~VvD~~~~~~-----------~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
....+....+++ -+-.++||+++|+.+-.. .+...+.++...+....|+.||+||||+..
T Consensus 185 ~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 185 AWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 222333433333 245799999999864321 122233444444456899999999999874
No 403
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.83 E-value=3.8e-05 Score=71.17 Aligned_cols=127 Identities=19% Similarity=0.105 Sum_probs=85.2
Q ss_pred HHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCC
Q 017937 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
.+...+..+|++|-|+|+.++.......+.++++.....+.+|+|+|||||++......+...+.+..+.. -|--|-.+
T Consensus 206 ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTi-AfHAsi~n 284 (572)
T KOG2423|consen 206 ELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTI-AFHASINN 284 (572)
T ss_pred HHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcce-eeehhhcC
Confidence 34455788999999999999875555666677776657788999999999998776666665555543321 24455555
Q ss_pred CCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec
Q 017937 268 GHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR 333 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~ 333 (363)
..|-..|+..|.+...-.. ...+++ +-..+.+|+|+|+.||.+.-+..
T Consensus 285 sfGKgalI~llRQf~kLh~---dkkqIS---------------VGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 285 SFGKGALIQLLRQFAKLHS---DKKQIS---------------VGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred ccchhHHHHHHHHHHhhcc---Ccccee---------------eeeecCCCCchHHHHHHHhhccc
Confidence 6676667766665443210 001111 11235899999999999987764
No 404
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.78 E-value=8.8e-05 Score=69.89 Aligned_cols=119 Identities=17% Similarity=0.157 Sum_probs=62.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccc--ceecCCCCceEEEEEE-------------------E----------EeCCCe
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKL--SIVTNKPQTTRHRILG-------------------I----------CSGPEY 163 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~--~~~~~~~~~t~~~~~~-------------------~----------~~~~~~ 163 (363)
...|++||++||||||.+-.|..... .......-.|.+.++. . .....+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 55899999999999999887754322 0000011112221110 0 122345
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 164 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
.+.|+||.|..+.....+. . ++.+.... ...-+.+|++++.........+..+ .. -..-=+++||.|-..
T Consensus 283 d~ILVDTaGrs~~D~~~i~-e-l~~~~~~~-~~i~~~Lvlsat~K~~dlkei~~~f-~~---~~i~~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIE-E-LKELIDVS-HSIEVYLVLSATTKYEDLKEIIKQF-SL---FPIDGLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHH-H-HHHHHhcc-ccceEEEEEecCcchHHHHHHHHHh-cc---CCcceeEEEcccccC
Confidence 7999999996443222221 1 12222222 3344667777776555544444333 22 122356789999753
No 405
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=7.6e-05 Score=64.89 Aligned_cols=116 Identities=15% Similarity=0.154 Sum_probs=67.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccc----eecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLS----IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
|+|.++|...+||||+-.-...+--+ ....+...|++.+ ...-..+.+||.||....-...+... .
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~i----s~sfinf~v~dfPGQ~~~Fd~s~D~e------~ 97 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHI----SNSFINFQVWDFPGQMDFFDPSFDYE------M 97 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhh----hhhhcceEEeecCCccccCCCccCHH------H
Confidence 46999999999999976544332111 1122222222222 22336789999999654222222222 2
Q ss_pred hccccceEEEEeeCCCCCchHHHHHHH-hccc--cCCCCCEEEEEcCCCCCCh
Q 017937 192 AGINADCIVVLVDACKAPERIDEILEE-GVGD--HKDKLPILLVLNKKDLIKP 241 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~~~~-~~~~--~~~~~piilV~NK~Dl~~~ 241 (363)
.++.+-+++||+|+.+........+.. ..+. ...+..+=+.+.|.|-...
T Consensus 98 iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 98 IFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred HHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 367899999999997654222222221 2222 2367788899999998754
No 406
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00012 Score=70.24 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=74.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccc--------ceecCCC----------------CceEEEEEE-------EEeCCC
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKL--------SIVTNKP----------------QTTRHRILG-------ICSGPE 162 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~--------~~~~~~~----------------~~t~~~~~~-------~~~~~~ 162 (363)
+..+|+++|++|+||||++..|.+... ..+.... +........ .....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 445899999999999999998865311 1000000 000000000 011234
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh
Q 017937 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (363)
Q Consensus 163 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~ 242 (363)
..+.++||+|..+.... +...+ ..+. ......-.++|+|++.........+..+ .. -..-=+|+||.|-...-
T Consensus 270 ~d~VLIDTaGrsqrd~~-~~~~l-~~l~-~~~~~~~~~LVl~at~~~~~~~~~~~~f-~~---~~~~~~I~TKlDEt~~~ 342 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQM-LAEQI-AMLS-QCGTQVKHLLLLNATSSGDTLDEVISAY-QG---HGIHGCIITKVDEAASL 342 (420)
T ss_pred CCEEEecCCCCCcchHH-HHHHH-HHHh-ccCCCceEEEEEcCCCCHHHHHHHHHHh-cC---CCCCEEEEEeeeCCCCc
Confidence 57899999997543221 21111 1111 1223456889999986655554444333 22 23346789999976421
Q ss_pred HHHHHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 243 EIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 243 ~~~~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
-......... + .|+..++ +|++|
T Consensus 343 --G~~l~~~~~~-~-lPi~yvt--~Gq~V 365 (420)
T PRK14721 343 --GIALDAVIRR-K-LVLHYVT--NGQKV 365 (420)
T ss_pred --cHHHHHHHHh-C-CCEEEEE--CCCCc
Confidence 1222222221 1 2554443 57777
No 407
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.73 E-value=0.00064 Score=57.56 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=41.0
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 162 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
+..+.++||||........+.. + ..+.. ....|.+++|+|+..... .........+. .+ ..-+|+||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~-l-~~l~~-~~~~~~~~lVv~~~~~~~-~~~~~~~~~~~--~~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEE-L-KKIKR-VVKPDEVLLVVDAMTGQD-AVNQAKAFNEA--LG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHH-H-HHHHh-hcCCCeEEEEEECCCChH-HHHHHHHHHhh--CC-CCEEEEECCcCCC
Confidence 4568999999964321111111 1 11111 235899999999865433 33344444333 22 3577889999864
No 408
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00012 Score=69.86 Aligned_cols=120 Identities=16% Similarity=0.140 Sum_probs=65.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccc-------cceecCCC----------------CceEEEE------EEEEeCCCeeE
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQK-------LSIVTNKP----------------QTTRHRI------LGICSGPEYQM 165 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~-------~~~~~~~~----------------~~t~~~~------~~~~~~~~~~i 165 (363)
...++++|++||||||++..|.... +..++..+ +...... .......+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3469999999999999999886421 11111111 1000000 00011235688
Q ss_pred EEEeCCCCchhhhhhHHHHHHHHHHhhcc--ccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 166 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~--~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
.++||||..+.....+.. + ..+..... ...-.++|+|++............+ .. -.+-=+|+||.|-..
T Consensus 303 VLIDTaGr~~rd~~~l~e-L-~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f-~~---~~~~glIlTKLDEt~ 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLER-M-QSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY-ES---LNYRRILLTKLDEAD 373 (432)
T ss_pred EEEeCCCCCccCHHHHHH-H-HHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh-cC---CCCCEEEEEcccCCC
Confidence 999999975433222221 1 12222221 2346889999987765554444333 22 234467899999764
No 409
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.70 E-value=0.00013 Score=60.16 Aligned_cols=20 Identities=40% Similarity=0.730 Sum_probs=17.8
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 017937 118 VAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 118 i~i~G~~~~GKSSLln~l~~ 137 (363)
|+++|.+|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999988753
No 410
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.69 E-value=0.00011 Score=63.84 Aligned_cols=45 Identities=29% Similarity=0.248 Sum_probs=34.3
Q ss_pred ccccceEEEEeeCCCCCchHHHHHHHhccccCCC-CCEEEEEcCCCCC
Q 017937 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLI 239 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~-~piilV~NK~Dl~ 239 (363)
...+|.+|.|+|.+...-...+.+.++... .+ +++.+|+||+|-.
T Consensus 153 ~~~vD~vivVvDpS~~sl~taeri~~L~~e--lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSYKSLRTAERIKELAEE--LGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcHHHHHHHHHHHHHHHH--hCCceEEEEEeeccch
Confidence 568999999999986554445556666655 44 8999999999964
No 411
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.69 E-value=3.1e-05 Score=69.88 Aligned_cols=138 Identities=17% Similarity=0.173 Sum_probs=84.0
Q ss_pred EEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH
Q 017937 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (363)
Q Consensus 166 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~ 245 (363)
..-+.|||... ..+.+...++..|+||=|-|+.-+.......+.+.+. .+|-|||+||+||.++.+..
T Consensus 25 ~~~wfpgHmak--------alr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~----~k~riiVlNK~DLad~~~~k 92 (335)
T KOG2485|consen 25 PRRWFPGHMAK--------ALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP----PKPRIIVLNKMDLADPKEQK 92 (335)
T ss_pred ccccCchHHHH--------HHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC----CCceEEEEecccccCchhhh
Confidence 34456885332 2355666689999999999999888766666666553 58899999999999876666
Q ss_pred HHHHHHHhcCCCCcEEEcc--cCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCce
Q 017937 246 KKLEWYEKFTDVDEVIPVS--AKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYAC 323 (363)
Q Consensus 246 ~~~~~~~~~~~~~~i~~vS--Ak~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~ 323 (363)
...+.++..... .++..+ .....++..++..+.....+....-- + .+ .+-.++..+.||||+|+
T Consensus 93 ~~iq~~~~~~~~-~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~ir----t-~~--------~~~~vmVvGvPNVGKSs 158 (335)
T KOG2485|consen 93 KIIQYLEWQNLE-SYIKLDCNKDCNKQVSPLLKILTILSEELVRFIR----T-LN--------SEYNVMVVGVPNVGKSS 158 (335)
T ss_pred HHHHHHHhhccc-chhhhhhhhhhhhccccHHHHHHHHHHHHHHhhc----c-cC--------CceeEEEEcCCCCChHH
Confidence 666665544222 233333 33333466655554433322111000 0 00 01135566789999999
Q ss_pred EEEEEE
Q 017937 324 QVNVVS 329 (363)
Q Consensus 324 ~i~~~~ 329 (363)
++|.+.
T Consensus 159 LINa~r 164 (335)
T KOG2485|consen 159 LINALR 164 (335)
T ss_pred HHHHHH
Confidence 998654
No 412
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.66 E-value=0.0001 Score=62.81 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=40.6
Q ss_pred eeEEEEeCCCCchhh-hhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHH----hccccCCCCCEEEEEcCCC
Q 017937 163 YQMILYDTPGIIEKK-IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE----GVGDHKDKLPILLVLNKKD 237 (363)
Q Consensus 163 ~~i~l~DtpG~~~~~-~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~----~~~~~~~~~piilV~NK~D 237 (363)
-.+.++|+||...-- .-.+-...++.... ..---+++|++|+.- .-...+.+.- +........|.|=|++|+|
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~-~~F~~c~Vylldsqf-~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMD 175 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQ-WNFNVCVVYLLDSQF-LVDSTKFISGCLSALSAMISLEVPHINVLSKMD 175 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhc-ccCceeEEEEeccch-hhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHH
Confidence 358899999965421 11122233344433 222336777777642 1111122111 1111125789999999999
Q ss_pred CCCh
Q 017937 238 LIKP 241 (363)
Q Consensus 238 l~~~ 241 (363)
|...
T Consensus 176 Llk~ 179 (273)
T KOG1534|consen 176 LLKD 179 (273)
T ss_pred Hhhh
Confidence 9865
No 413
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00015 Score=68.27 Aligned_cols=119 Identities=15% Similarity=0.136 Sum_probs=61.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc------ccceecCCCCce-------------EEEEEEEEe-------------CCC
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQTT-------------RHRILGICS-------------GPE 162 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~------~~~~~~~~~~~t-------------~~~~~~~~~-------------~~~ 162 (363)
...++++|++||||||++..|... ++..++..+... ........+ ..+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~ 285 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNC 285 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCC
Confidence 447899999999999999887531 222222211100 000110000 134
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 163 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
+.++++||||..+.....+.. + ..+.. ....+.+++|++++.........+.. .. .-.+--+|+||.|-..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~E-L-~~l~~-~~~p~~~~LVLsag~~~~d~~~i~~~-f~---~l~i~glI~TKLDET~ 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSE-I-SAYTD-VVHPDLTCFTFSSGMKSADVMTILPK-LA---EIPIDGFIITKMDETT 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHH-H-HHHhh-ccCCceEEEECCCcccHHHHHHHHHh-cC---cCCCCEEEEEcccCCC
Confidence 689999999964422222221 1 11212 12457778888775433333322222 22 2234467899999763
No 414
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.65 E-value=0.0036 Score=51.50 Aligned_cols=144 Identities=22% Similarity=0.262 Sum_probs=76.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc----ccceecCCCCceEEEEEEEE--eCCCeeEEEEeCC-C------------Cchh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTP-G------------IIEK 176 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~----~~~~~~~~~~~t~~~~~~~~--~~~~~~i~l~Dtp-G------------~~~~ 176 (363)
.+|.+.|+|||||||++.++... .+.. . | .+...+ ......|.++|+. | ..-.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv-g---G----f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvG 77 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKV-G---G----FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVG 77 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCcee-e---e----EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccc
Confidence 48999999999999999887632 1110 0 0 000000 1111234444443 1 1001
Q ss_pred ----hhhhHHHHHHHHHHhhccccceEEEEeeCCCCCch----HHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHH
Q 017937 177 ----KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER----IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (363)
Q Consensus 177 ----~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~----~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~ 248 (363)
....+.+......+.++..||+++ +|---+.+. ....+.+.+. ..+|+|.++.+-+.- ...
T Consensus 78 kY~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~---~~kpliatlHrrsr~------P~v 146 (179)
T COG1618 78 KYGVNVEGLEEIAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLK---SGKPLIATLHRRSRH------PLV 146 (179)
T ss_pred eEEeeHHHHHHHhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhc---CCCcEEEEEecccCC------hHH
Confidence 123445556667777778889665 564333322 2233333332 578899988877652 123
Q ss_pred HHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 249 EWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 249 ~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
+.+...... -+| .+.+|=+.++..|...+.
T Consensus 147 ~~ik~~~~v-~v~----lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 147 QRIKKLGGV-YVF----LTPENRNRILNEILSVLK 176 (179)
T ss_pred HHhhhcCCE-EEE----EccchhhHHHHHHHHHhc
Confidence 344433322 222 567777788888877764
No 415
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.00047 Score=65.76 Aligned_cols=150 Identities=19% Similarity=0.200 Sum_probs=76.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc----------ccceecCCCCc-----------e--EEEEEEE----------EeC
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ----------KLSIVTNKPQT-----------T--RHRILGI----------CSG 160 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~----------~~~~~~~~~~~-----------t--~~~~~~~----------~~~ 160 (363)
++..|+++|++||||||.+..|... ++..++..+.. . ...+... -..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3458999999999999999877531 22221111100 0 0001100 012
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 161 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
.++.+.++||+|..+.....+.+ + ..+........-+++|+|++.........+.... .-.+-=+++||.|-..
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~e-l-~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~----~~~~~~~I~TKlDet~ 326 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAE-M-KELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS----PFSYKTVIFTKLDETT 326 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHH-H-HHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc----CCCCCEEEEEeccCCC
Confidence 45789999999964422111111 1 1222222222358899999887655554444332 1124567899999764
Q ss_pred hhHHHHHHHHHHhcCCCCcEEEcccCCCCCH-HHHH
Q 017937 241 PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV-EDIR 275 (363)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi-~eL~ 275 (363)
.-- ......... + .|+..++ +|++| +++.
T Consensus 327 ~~G--~~l~~~~~~-~-~Pi~yit--~Gq~vPeDl~ 356 (388)
T PRK12723 327 CVG--NLISLIYEM-R-KEVSYVT--DGQIVPHNIS 356 (388)
T ss_pred cch--HHHHHHHHH-C-CCEEEEe--CCCCChhhhh
Confidence 321 112222221 1 2454443 57888 4543
No 416
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.64 E-value=0.00026 Score=66.12 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=51.1
Q ss_pred EEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC---------chH---HHHHHHhccc
Q 017937 155 LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP---------ERI---DEILEEGVGD 222 (363)
Q Consensus 155 ~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~---------~~~---~~~~~~~~~~ 222 (363)
...+..++..+.+||++|.... .+.|..++.++++++||+|.++.. ... ...+..++..
T Consensus 153 ~~~f~~~~~~~~~~DvgGq~~~---------R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~ 223 (317)
T cd00066 153 ETKFTIKNLKFRMFDVGGQRSE---------RKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS 223 (317)
T ss_pred EEEEEecceEEEEECCCCCccc---------chhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC
Confidence 3345566789999999994221 244667789999999999998632 111 1222222222
Q ss_pred c-CCCCCEEEEEcCCCCCC
Q 017937 223 H-KDKLPILLVLNKKDLIK 240 (363)
Q Consensus 223 ~-~~~~piilV~NK~Dl~~ 240 (363)
. ..+.|++|++||.|+..
T Consensus 224 ~~~~~~pill~~NK~D~f~ 242 (317)
T cd00066 224 RWFANTSIILFLNKKDLFE 242 (317)
T ss_pred ccccCCCEEEEccChHHHH
Confidence 1 15799999999999863
No 417
>PRK13695 putative NTPase; Provisional
Probab=97.55 E-value=0.0028 Score=53.74 Aligned_cols=87 Identities=16% Similarity=0.237 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhccccceEEEEeeC---CCCCch-HHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCC
Q 017937 181 LDSMMMKNVRSAGINADCIVVLVDA---CKAPER-IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (363)
Q Consensus 181 ~~~~~~~~~~~~~~~ad~ii~VvD~---~~~~~~-~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (363)
+...........+..+++ +++|- .+.... ....+...+ . .+.|++++.||.... ...+.+....+
T Consensus 82 le~~~~~l~~~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~-~--~~~~~i~v~h~~~~~------~~~~~i~~~~~ 150 (174)
T PRK13695 82 LERIGIPALERALEEADV--IIIDEIGKMELKSPKFVKAVEEVL-D--SEKPVIATLHRRSVH------PFVQEIKSRPG 150 (174)
T ss_pred HHHHHHHHHHhccCCCCE--EEEECCCcchhhhHHHHHHHHHHH-h--CCCeEEEEECchhhH------HHHHHHhccCC
Confidence 344444445555677887 57783 222221 122233333 2 578999999985321 12233333333
Q ss_pred CCcEEEcccCCCCCHHHHHHHHHhhC
Q 017937 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 257 ~~~i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
..++.+ +.+|=+++...+.+.+
T Consensus 151 -~~i~~~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 151 -GRVYEL---TPENRDSLPFEILNRL 172 (174)
T ss_pred -cEEEEE---cchhhhhHHHHHHHHH
Confidence 255655 5567678888777655
No 418
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.52 E-value=0.0012 Score=53.80 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=56.7
Q ss_pred EEEcCCCCChHHHHHHHhc------cccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 119 AVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 119 ~i~G~~~~GKSSLln~l~~------~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
..-|.+|+|||++.-.+.. .....+.-.++.+. -.+.+.++|||+..... ....
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~---------~~yd~VIiD~p~~~~~~-----------~~~~ 63 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLAN---------LDYDYIIIDTGAGISDN-----------VLDF 63 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCC---------CCCCEEEEECCCCCCHH-----------HHHH
Confidence 3457899999998766542 11111221111110 11789999999843211 1234
Q ss_pred ccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC
Q 017937 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 239 (363)
+..+|.++++++.+...-.......+.+.......++.+|+|+++..
T Consensus 64 l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 64 FLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred HHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 77899999999986433111122222222222456788999999743
No 419
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.47 E-value=0.00037 Score=65.69 Aligned_cols=78 Identities=18% Similarity=0.117 Sum_probs=51.9
Q ss_pred EEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC------------chHHHHHHHhcc
Q 017937 154 ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERIDEILEEGVG 221 (363)
Q Consensus 154 ~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~------------~~~~~~~~~~~~ 221 (363)
....+..++..+.+||.+|.... .+.|..++.++++++||+|.++.. ......+..++.
T Consensus 175 ~~~~f~~~~~~~~~~DvgGqr~~---------R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~ 245 (342)
T smart00275 175 QETAFIVKKLFFRMFDVGGQRSE---------RKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN 245 (342)
T ss_pred EEEEEEECCeEEEEEecCCchhh---------hhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc
Confidence 33445566788999999994221 244667789999999999998632 111222333332
Q ss_pred c-cCCCCCEEEEEcCCCCCC
Q 017937 222 D-HKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 222 ~-~~~~~piilV~NK~Dl~~ 240 (363)
. ...+.|++|++||.|+..
T Consensus 246 ~~~~~~~piil~~NK~D~~~ 265 (342)
T smart00275 246 SRWFANTSIILFLNKIDLFE 265 (342)
T ss_pred CccccCCcEEEEEecHHhHH
Confidence 2 125789999999999863
No 420
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.46 E-value=0.00022 Score=69.02 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=38.6
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCC-CEEEEEcCCCCC
Q 017937 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDLI 239 (363)
Q Consensus 163 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~-piilV~NK~Dl~ 239 (363)
..++++||||..+.....+.+ + ..+ ..+..+|.+++|+|++.+.. .......+. ... ..-+|+||.|-.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~E-l-~~l-~~~~~pdevlLVvda~~gq~-av~~a~~F~----~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEE-M-KEI-KEAVKPDEVLLVIDATIGQQ-AKNQAKAFH----EAVGIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHH-H-HHH-HHHhcccceeEEEeccccHH-HHHHHHHHH----hcCCCCEEEEecccCC
Confidence 478999999964432222211 1 111 12346899999999987532 222222221 122 346788999975
No 421
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.45 E-value=0.00037 Score=67.53 Aligned_cols=144 Identities=17% Similarity=0.184 Sum_probs=72.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc--------ccceecCCCCce-------------EEEEEEE----------EeCCCee
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ--------KLSIVTNKPQTT-------------RHRILGI----------CSGPEYQ 164 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~--------~~~~~~~~~~~t-------------~~~~~~~----------~~~~~~~ 164 (363)
..++|+|++||||||++..|... ++..++..+... ....... -...++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 47999999999999988776431 222222222100 0000000 0123468
Q ss_pred EEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH
Q 017937 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (363)
Q Consensus 165 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~ 244 (363)
+.++||||..+.....+.. + ..+........-+++|++++.........+..+ .. .+ +--+++||.|-...-
T Consensus 302 lVlIDt~G~~~~d~~~~~~-L-~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f-~~--~~-~~~vI~TKlDet~~~-- 373 (424)
T PRK05703 302 VILIDTAGRSQRDKRLIEE-L-KALIEFSGEPIDVYLVLSATTKYEDLKDIYKHF-SR--LP-LDGLIFTKLDETSSL-- 373 (424)
T ss_pred EEEEeCCCCCCCCHHHHHH-H-HHHHhccCCCCeEEEEEECCCCHHHHHHHHHHh-CC--CC-CCEEEEecccccccc--
Confidence 9999999974433222211 1 112121223456788899876554444433332 22 11 236889999985432
Q ss_pred HHHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 245 AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 245 ~~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
-......... + .|+..++ +|++|
T Consensus 374 G~i~~~~~~~-~-lPv~yit--~Gq~V 396 (424)
T PRK05703 374 GSILSLLIES-G-LPISYLT--NGQRV 396 (424)
T ss_pred cHHHHHHHHH-C-CCEEEEe--CCCCC
Confidence 1222332221 1 2554443 57776
No 422
>PRK10867 signal recognition particle protein; Provisional
Probab=97.45 E-value=0.00078 Score=65.21 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=38.7
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 162 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
++.+.++||||..+.....+ ..+ ..+.. ....+.+++|+|+..+ +........+... . ...-+|+||.|-..
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm-~eL-~~i~~-~v~p~evllVlda~~g-q~av~~a~~F~~~--~-~i~giIlTKlD~~~ 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELM-DEL-KAIKA-AVNPDEILLVVDAMTG-QDAVNTAKAFNEA--L-GLTGVILTKLDGDA 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHH-HHH-HHHHH-hhCCCeEEEEEecccH-HHHHHHHHHHHhh--C-CCCEEEEeCccCcc
Confidence 46799999999543222222 111 12222 2256788999998754 2222223222222 1 22467789999643
No 423
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.40 E-value=0.00039 Score=63.08 Aligned_cols=119 Identities=20% Similarity=0.247 Sum_probs=65.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc------ccceecCCCCc--------e----EE-EEEEEE-------------eCCC
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT--------T----RH-RILGIC-------------SGPE 162 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~------~~~~~~~~~~~--------t----~~-~~~~~~-------------~~~~ 162 (363)
..+++++|.+|+||||++..+... ....++..+.. + .. ...... ...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 358999999999999999877542 11111111100 0 00 000000 1125
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 163 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
+.+.++||||..+.....+.+ +.. ... ....+-+++|+|++.........+..+. . -.+-=+++||.|-..
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~e-l~~-~~~-~~~~~~~~LVl~a~~~~~d~~~~~~~f~-~---~~~~~~I~TKlDet~ 225 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEE-MIE-TMG-QVEPDYICLTLSASMKSKDMIEIITNFK-D---IHIDGIVFTKFDETA 225 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHH-HHH-HHh-hhCCCeEEEEEcCccCHHHHHHHHHHhC-C---CCCCEEEEEeecCCC
Confidence 689999999964433222222 111 112 2245678999999765555444444332 2 234568899999864
No 424
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.36 E-value=0.00057 Score=66.79 Aligned_cols=147 Identities=18% Similarity=0.253 Sum_probs=73.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccc--------cceecCCCC----------------ceEEEEEE-------EEeCCCe
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQK--------LSIVTNKPQ----------------TTRHRILG-------ICSGPEY 163 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~--------~~~~~~~~~----------------~t~~~~~~-------~~~~~~~ 163 (363)
...++++|++||||||++..|.+.. +..+...+. ........ .....+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~ 335 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNK 335 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCC
Confidence 3479999999999999999887422 211111111 00000000 0112345
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhH
Q 017937 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (363)
Q Consensus 164 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~ 243 (363)
.+.++||+|..+... .+... ...+.. .....-.++|+|++.......+.+..+ . ....--+|+||.|-....
T Consensus 336 d~VLIDTaGr~~~d~-~~~e~-~~~l~~-~~~p~e~~LVLdAt~~~~~l~~i~~~f-~---~~~~~g~IlTKlDet~~~- 407 (484)
T PRK06995 336 HIVLIDTIGMSQRDR-MVSEQ-IAMLHG-AGAPVKRLLLLNATSHGDTLNEVVQAY-R---GPGLAGCILTKLDEAASL- 407 (484)
T ss_pred CeEEeCCCCcChhhH-HHHHH-HHHHhc-cCCCCeeEEEEeCCCcHHHHHHHHHHh-c---cCCCCEEEEeCCCCcccc-
Confidence 789999999643221 11111 111111 111233789999986554443333322 2 223446778999975321
Q ss_pred HHHHHHHHHhcCCCCcEEEcccCCCCCH-HHH
Q 017937 244 IAKKLEWYEKFTDVDEVIPVSAKYGHGV-EDI 274 (363)
Q Consensus 244 ~~~~~~~~~~~~~~~~i~~vSAk~g~gi-~eL 274 (363)
-......... + .|+..++ +|++| ++|
T Consensus 408 -G~~l~i~~~~-~-lPI~yvt--~GQ~VPeDL 434 (484)
T PRK06995 408 -GGALDVVIRY-K-LPLHYVS--NGQRVPEDL 434 (484)
T ss_pred -hHHHHHHHHH-C-CCeEEEe--cCCCChhhh
Confidence 1222222221 1 2555443 67888 554
No 425
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.35 E-value=0.00064 Score=45.63 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=24.8
Q ss_pred ccccceEEEEeeCCCCC----chHHHHHHHhccccCCCCCEEEEEcCCC
Q 017937 193 GINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKD 237 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~----~~~~~~~~~~~~~~~~~~piilV~NK~D 237 (363)
..-.++|+|++|.+... +.+.. +.+.++....++|+++|+||+|
T Consensus 11 ~hL~~~ilfi~D~Se~CGysie~Q~~-L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCGYSIEEQLS-LFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GGT-SEEEEEE-TT-TTSS-HHHHHH-HHHHHHHHTTTS-EEEEE--TT
T ss_pred HhhcceEEEEEcCCCCCCCCHHHHHH-HHHHHHHHcCCCCEEEEEeccC
Confidence 44678999999998655 22222 3333333335899999999998
No 426
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.31 E-value=0.00017 Score=62.49 Aligned_cols=76 Identities=25% Similarity=0.311 Sum_probs=38.2
Q ss_pred eeEEEEeCCCCchhh--hhhHHHHHHHHHHhhccccceEEEEeeCC---CCCchHHHHHHHhccccCCCCCEEEEEcCCC
Q 017937 163 YQMILYDTPGIIEKK--IHMLDSMMMKNVRSAGINADCIVVLVDAC---KAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (363)
Q Consensus 163 ~~i~l~DtpG~~~~~--~~~~~~~~~~~~~~~~~~ad~ii~VvD~~---~~~~~~~~~~~~~~~~~~~~~piilV~NK~D 237 (363)
..+.++|+||+++-- ...+...+ +...+ ..-.=+++-++|+. ++..-+...+...........|-+=|+.|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~-~~Lek-~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIF-RKLEK-LDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHH-HHHHH-cCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhH
Confidence 358899999975421 12222222 12211 22233455556653 3222222222222222225688899999999
Q ss_pred CCC
Q 017937 238 LIK 240 (363)
Q Consensus 238 l~~ 240 (363)
+..
T Consensus 175 l~~ 177 (290)
T KOG1533|consen 175 LLK 177 (290)
T ss_pred HHH
Confidence 864
No 427
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.28 E-value=0.0015 Score=63.15 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=39.6
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC
Q 017937 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (363)
Q Consensus 161 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 239 (363)
.++.+.++||||..+.....+ ..+ ..+.. .-..|.+++|+|++.+. ........+... . ...=+|+||.|-.
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~-~eL-~~i~~-~~~p~e~lLVvda~tgq-~~~~~a~~f~~~--v-~i~giIlTKlD~~ 252 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELM-EEL-AAIKE-ILNPDEILLVVDAMTGQ-DAVNTAKTFNER--L-GLTGVVLTKLDGD 252 (428)
T ss_pred cCCCEEEEeCCCccccCHHHH-HHH-HHHHH-hhCCceEEEEEeccchH-HHHHHHHHHHhh--C-CCCEEEEeCccCc
Confidence 346799999999643222212 111 12222 33578899999987542 322232222222 1 2346779999964
No 428
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.00087 Score=68.73 Aligned_cols=121 Identities=15% Similarity=0.202 Sum_probs=62.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc--------cceecCCCCc---e--------EE--EEEEE----------EeCCCee
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK--------LSIVTNKPQT---T--------RH--RILGI----------CSGPEYQ 164 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~--------~~~~~~~~~~---t--------~~--~~~~~----------~~~~~~~ 164 (363)
..|+++|+.||||||++..|.+.. +..++..... . .. ..... -...++.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 478999999999999999887532 1111110000 0 00 00000 0123457
Q ss_pred EEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 165 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
++|+||||..+.... +.+.. ..+.. ....+-+++|+|++.......+.+..+.... .-.+-=+|+||.|-..
T Consensus 266 ~VLIDTAGRs~~d~~-l~eel-~~l~~-~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~-~~~i~glIlTKLDEt~ 337 (767)
T PRK14723 266 LVLIDTVGMSQRDRN-VSEQI-AMLCG-VGRPVRRLLLLNAASHGDTLNEVVHAYRHGA-GEDVDGCIITKLDEAT 337 (767)
T ss_pred EEEEeCCCCCccCHH-HHHHH-HHHhc-cCCCCeEEEEECCCCcHHHHHHHHHHHhhcc-cCCCCEEEEeccCCCC
Confidence 999999996443222 22211 11111 2346678999999865444333333221110 0023467899999764
No 429
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.25 E-value=0.00075 Score=65.24 Aligned_cols=152 Identities=15% Similarity=0.230 Sum_probs=92.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
.+++|+|..++|||+|+.+++...+. ....+...+.....+......-+.+-|-.|..+.. +...
T Consensus 31 lk~givg~~~sgktalvhr~ltgty~-~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~aQ--------------ft~w 95 (749)
T KOG0705|consen 31 LKLGIVGTSQSGKTALVHRYLTGTYT-QDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDAQ--------------FCQW 95 (749)
T ss_pred hheeeeecccCCceeeeeeeccceec-cccCCcCccceeeEEeeccceEeeeecccCCchhh--------------hhhh
Confidence 48999999999999999998877665 23444444555555566666777777877732211 1345
Q ss_pred cceEEEEeeCCCCC--chHHHHHHHhccc-cCCCCCEEEEEcCCCCCC--hh-HHHHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 196 ADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIK--PG-EIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 196 ad~ii~VvD~~~~~--~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~--~~-~~~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
.|++|||+...+.. +.+......+... .....|+++|+++.=... ++ .................+|+++|.+|.
T Consensus 96 vdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGl 175 (749)
T KOG0705|consen 96 VDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGL 175 (749)
T ss_pred ccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhh
Confidence 67777877765433 3332222222211 125678888887743211 11 111112222222334578999999999
Q ss_pred CHHHHHHHHHhhC
Q 017937 270 GVEDIRDWILTKL 282 (363)
Q Consensus 270 gi~eL~~~i~~~l 282 (363)
+++..|..+..++
T Consensus 176 nv~rvf~~~~~k~ 188 (749)
T KOG0705|consen 176 NVERVFQEVAQKI 188 (749)
T ss_pred hHHHHHHHHHHHH
Confidence 9999988776543
No 430
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.05 E-value=0.011 Score=56.02 Aligned_cols=160 Identities=21% Similarity=0.190 Sum_probs=82.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccce---------------ecCCCCceEE----------EEEEEE-eCCCeeEEEEe
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRH----------RILGIC-SGPEYQMILYD 169 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~---------------~~~~~~~t~~----------~~~~~~-~~~~~~i~l~D 169 (363)
.-|++||+.-+|||||+.++...-+-. .-+..|.|.. .....+ ..-..++.++|
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiD 97 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLID 97 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEe
Confidence 379999999999999999986321100 0111121111 111111 23357889999
Q ss_pred CCCCchhh-----------------------hhhHHHHHHHHHHhhccc--cceEEEEeeCCCCC------chHHHHHHH
Q 017937 170 TPGIIEKK-----------------------IHMLDSMMMKNVRSAGIN--ADCIVVLVDACKAP------ERIDEILEE 218 (363)
Q Consensus 170 tpG~~~~~-----------------------~~~~~~~~~~~~~~~~~~--ad~ii~VvD~~~~~------~~~~~~~~~ 218 (363)
|-|+.-.. |..-.+.+ ++..+.+ .=++++--|.+-.. ....+...+
T Consensus 98 CVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiG---T~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 98 CVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIG---TRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred ecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhc---ccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 99873210 11111111 1111222 22444545554322 122233444
Q ss_pred hccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 219 GVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 219 ~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
.++. -++|+++++|=.+-..++. .+....+....+. +++++++.. ..-+++...|.+.+.
T Consensus 175 ELk~--igKPFvillNs~~P~s~et-~~L~~eL~ekY~v-pVlpvnc~~-l~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 175 ELKE--IGKPFVILLNSTKPYSEET-QELAEELEEKYDV-PVLPVNCEQ-LREEDITRILEEVLY 234 (492)
T ss_pred HHHH--hCCCEEEEEeCCCCCCHHH-HHHHHHHHHHhCC-cEEEeehHH-cCHHHHHHHHHHHHh
Confidence 4555 6899999999887655443 3444555554443 788887753 334555554444443
No 431
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.03 E-value=0.0044 Score=47.91 Aligned_cols=92 Identities=22% Similarity=0.147 Sum_probs=52.0
Q ss_pred EcCCCCChHHHHHHHhc-------cccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 121 LGKPNVGKSTLANQMIG-------QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 121 ~G~~~~GKSSLln~l~~-------~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
-+..|+||||+.-.|.. .+...+...+... ..+.++|||+..... ....+
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~------------~D~IIiDtpp~~~~~-----------~~~~l 62 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG------------DDYVVVDLGRSLDEV-----------SLAAL 62 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC------------CCEEEEeCCCCcCHH-----------HHHHH
Confidence 45688999997766542 1222222222211 278999999853321 12236
Q ss_pred cccceEEEEeeCCCCCchHHHHHHHhccccC-C-CCCEEEEEcC
Q 017937 194 INADCIVVLVDACKAPERIDEILEEGVGDHK-D-KLPILLVLNK 235 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~-~-~~piilV~NK 235 (363)
..||.++++++.+.........+.+.++... . ..++.+|+|+
T Consensus 63 ~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 63 DQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7899999999886544322333333333321 2 3567788886
No 432
>PRK01889 GTPase RsgA; Reviewed
Probab=97.03 E-value=0.00055 Score=64.96 Aligned_cols=55 Identities=40% Similarity=0.551 Sum_probs=34.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecC-------CCCceEEEEEEEEeCCCeeEEEEeCCCCc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPEYQMILYDTPGII 174 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~i~l~DtpG~~ 174 (363)
+++++|.+|+|||||+|.|.+........ ...+|.......+.. ...++||||+.
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~---~~~l~DtpG~~ 258 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPS---GGLLIDTPGMR 258 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecC---CCeecCCCchh
Confidence 79999999999999999999754322111 112333322222222 23588999974
No 433
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.93 E-value=0.0068 Score=46.46 Aligned_cols=72 Identities=28% Similarity=0.319 Sum_probs=41.6
Q ss_pred EEEEc-CCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 118 VAVLG-KPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 118 i~i~G-~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
|++.| ..|+||||+...+...-.. .+.. ...... ...+.+.++|+|+..... ....+..+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~--vl~~d~-d~~~d~viiD~p~~~~~~-----------~~~~l~~a 62 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKR--VLLIDL-DPQYDYIIIDTPPSLGLL-----------TRNALAAA 62 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCc--EEEEeC-CCCCCEEEEeCcCCCCHH-----------HHHHHHHC
Confidence 56666 6799999987765432110 0100 000001 111679999999853221 12336779
Q ss_pred ceEEEEeeCCCC
Q 017937 197 DCIVVLVDACKA 208 (363)
Q Consensus 197 d~ii~VvD~~~~ 208 (363)
|.++++++.+..
T Consensus 63 d~viv~~~~~~~ 74 (104)
T cd02042 63 DLVLIPVQPSPL 74 (104)
T ss_pred CEEEEeccCCHH
Confidence 999999988643
No 434
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.93 E-value=0.0083 Score=44.74 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=44.3
Q ss_pred EEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccc
Q 017937 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (363)
Q Consensus 118 i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad 197 (363)
+++.|.+|+||||+...+...-.. .+... ..++ .+.++|+|+........ .......+|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v----~~~~----d~iivD~~~~~~~~~~~--------~~~~~~~~~ 60 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRV----LLID----DYVLIDTPPGLGLLVLL--------CLLALLAAD 60 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeE----EEEC----CEEEEeCCCCccchhhh--------hhhhhhhCC
Confidence 678899999999999887643211 11100 0111 78999999854322100 123367899
Q ss_pred eEEEEeeCCCCC
Q 017937 198 CIVVLVDACKAP 209 (363)
Q Consensus 198 ~ii~VvD~~~~~ 209 (363)
.++++++.....
T Consensus 61 ~vi~v~~~~~~~ 72 (99)
T cd01983 61 LVIIVTTPEALA 72 (99)
T ss_pred EEEEecCCchhh
Confidence 999999887544
No 435
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.0023 Score=68.39 Aligned_cols=118 Identities=21% Similarity=0.249 Sum_probs=65.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcccccee-------cCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh--h----hhHHH
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--I----HMLDS 183 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~-------~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~--~----~~~~~ 183 (363)
=-+|+|++|+||||++... |.+|... ...++ |+++. .+-+..-+++||.|-.... . .....
T Consensus 127 Wy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cd----wwf~deaVlIDtaGry~~q~s~~~~~~~~W~ 200 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCD----WWFTDEAVLIDTAGRYITQDSADEVDRAEWL 200 (1188)
T ss_pred ceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccC----cccccceEEEcCCcceecccCcchhhHHHHH
Confidence 4588999999999988652 3333321 11122 33322 1123467899999942211 0 11111
Q ss_pred HHHHHHHh--hccccceEEEEeeCCCCC--ch---------HHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 184 MMMKNVRS--AGINADCIVVLVDACKAP--ER---------IDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 184 ~~~~~~~~--~~~~ad~ii~VvD~~~~~--~~---------~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
.+....++ ..+-.++||+.+|+.+-. .. +...+.++...+....|+.|++||.|+..
T Consensus 201 ~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 201 GFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 12222222 245679999999986432 11 11123333333446799999999999975
No 436
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.86 E-value=0.0073 Score=51.02 Aligned_cols=65 Identities=17% Similarity=0.100 Sum_probs=39.9
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 164 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
.+.++|||+..... ....+..+|.+|++++...........+.+.++.. ......+|+|++|...
T Consensus 64 d~viiD~p~~~~~~-----------~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIERG-----------FITAIAPADEALLVTTPEISSLRDADRVKGLLEAL-GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcHH-----------HHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHc-CCceEEEEEeCCcccc
Confidence 79999999843211 12235789999999988754432222333333331 2245778999998753
No 437
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.80 E-value=0.0062 Score=48.48 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 017937 118 VAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 118 i~i~G~~~~GKSSLln~l~~~ 138 (363)
|++.|++|+|||+++..+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998764
No 438
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.005 Score=57.42 Aligned_cols=93 Identities=23% Similarity=0.345 Sum_probs=52.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc------cccceec-------------CCCCceEEEEEEE----------------E
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVT-------------NKPQTTRHRILGI----------------C 158 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~------~~~~~~~-------------~~~~~t~~~~~~~----------------~ 158 (363)
++-.|.++|..|+||||.+-.|.. .+...+. .....++.++++. +
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 344799999999999998876642 1111110 0001112222222 2
Q ss_pred eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC
Q 017937 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP 209 (363)
Q Consensus 159 ~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~ 209 (363)
..+++.+.++||.|-.+.. ..+-+.+.+ +.. .-..|-+|||+|++-+.
T Consensus 180 Kke~fdvIIvDTSGRh~qe-~sLfeEM~~-v~~-ai~Pd~vi~VmDasiGQ 227 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQE-ASLFEEMKQ-VSK-AIKPDEIIFVMDASIGQ 227 (483)
T ss_pred HhcCCcEEEEeCCCchhhh-HHHHHHHHH-HHh-hcCCCeEEEEEeccccH
Confidence 3456789999999954332 223233222 222 34689999999998765
No 439
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.79 E-value=0.029 Score=51.03 Aligned_cols=145 Identities=14% Similarity=0.126 Sum_probs=69.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCC-------CCc-hhhhhhHHHHHHHH
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTP-------GII-EKKIHMLDSMMMKN 188 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~Dtp-------G~~-~~~~~~~~~~~~~~ 188 (363)
-|++.|.|++||||+.+.|...-.. .+..+.+++.. .+. .......+..+...
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~-------------------~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~ 63 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEE-------------------KGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSA 63 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHH-------------------TT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh-------------------cCCEEEEEcccccccchhhhhchhhhHHHHHHHHHH
Confidence 5899999999999999998763111 11122222211 110 11122334444555
Q ss_pred HHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC---------------hhHHHHHHHHHHh
Q 017937 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK---------------PGEIAKKLEWYEK 253 (363)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~---------------~~~~~~~~~~~~~ 253 (363)
+.+.+..-+ |+++|..+-.......+....+. .+.+..+|.-.+++.. .+.+..+...++.
T Consensus 64 v~r~ls~~~--iVI~Dd~nYiKg~RYelyclAr~--~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~ 139 (270)
T PF08433_consen 64 VERALSKDT--IVILDDNNYIKGMRYELYCLARA--YGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEE 139 (270)
T ss_dssp HHHHHTT-S--EEEE-S---SHHHHHHHHHHHHH--TT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---
T ss_pred HHHhhccCe--EEEEeCCchHHHHHHHHHHHHHH--cCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcC
Confidence 555555443 44688887666676777777777 6788888888877521 1222333333332
Q ss_pred cCC----CCcEEEcc-cCCCCCHHHHHHHHHhhCCC
Q 017937 254 FTD----VDEVIPVS-AKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 254 ~~~----~~~i~~vS-Ak~g~gi~eL~~~i~~~l~~ 284 (363)
-.. ..|.|.+. .-....++++.+.|...-..
T Consensus 140 P~~~nrWD~plf~i~~~~~~~~~~~I~~~l~~~~~~ 175 (270)
T PF08433_consen 140 PDPKNRWDSPLFTIDSSDEELPLEEIWNALFENKPL 175 (270)
T ss_dssp TTSS-GGGS-SEEEE-TTS---HHHHHHHHHHHHTS
T ss_pred CCCCCCccCCeEEEecCCCCCCHHHHHHHHHhcCCC
Confidence 211 12445554 56666788999988654433
No 440
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.79 E-value=0.0011 Score=67.50 Aligned_cols=129 Identities=17% Similarity=0.160 Sum_probs=76.6
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEE-------------------------------------
Q 017937 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI------------------------------------- 154 (363)
Q Consensus 112 ~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~------------------------------------- 154 (363)
....|.|+++|..++||||.++.+.|..|..-+... .|+.+.
T Consensus 26 ~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~gi-vTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~ 104 (657)
T KOG0446|consen 26 FIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGI-VTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIR 104 (657)
T ss_pred cccCCceEEecCCCCcchhHHHHhhccccccccccc-eecccceeecccccCCcccchhccccccccccCCHHHHHHHHH
Confidence 346679999999999999999999997654211111 111000
Q ss_pred -------------------EEEEeCCCeeEEEEeCCCCchh----hhhhHHHHHHHHHHhhccccceEEEEeeCCCCCch
Q 017937 155 -------------------LGICSGPEYQMILYDTPGIIEK----KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER 211 (363)
Q Consensus 155 -------------------~~~~~~~~~~i~l~DtpG~~~~----~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~ 211 (363)
..+..-.-..++++|.||+... ....+..........++....++++.+...+..-.
T Consensus 105 ~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~a 184 (657)
T KOG0446|consen 105 SETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIA 184 (657)
T ss_pred hhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhhh
Confidence 0001111135789999998542 23445566667778888899998888877653211
Q ss_pred HHHHHHHhccccCCCCCEEEEEcCCCCCCh
Q 017937 212 IDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (363)
Q Consensus 212 ~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 241 (363)
...++.-....-..+...+-|++|.|+.+.
T Consensus 185 ts~alkiarevDp~g~RTigvitK~Dlmdk 214 (657)
T KOG0446|consen 185 TSPALVVAREVDPGGSRTLEVITKFDFMDK 214 (657)
T ss_pred cCHHHHHHHhhCCCccchhHHhhhHHhhhc
Confidence 112221111111255677778888887654
No 441
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.78 E-value=0.0023 Score=58.82 Aligned_cols=101 Identities=25% Similarity=0.360 Sum_probs=55.7
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccce-----EEEEeeCCCCCchHH--HHHHHhccccCCCCCEEEEE
Q 017937 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC-----IVVLVDACKAPERID--EILEEGVGDHKDKLPILLVL 233 (363)
Q Consensus 161 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~-----ii~VvD~~~~~~~~~--~~~~~~~~~~~~~~piilV~ 233 (363)
.++.+.++||+|-.+...+.|.+. +.+.+.+...+. +++++|++.+..... +.+.+... . --+++
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL--~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~-----l-~GiIl 291 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDEL--KKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG-----L-DGIIL 291 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHH--HHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC-----C-ceEEE
Confidence 346799999999766655544432 233344444444 888889998764432 22333222 1 25789
Q ss_pred cCCCCCChhH-HHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHH
Q 017937 234 NKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (363)
Q Consensus 234 NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~ 276 (363)
+|+|-....- +-.+...+ + .|+..+- -|+++++|..
T Consensus 292 TKlDgtAKGG~il~I~~~l----~-~PI~fiG--vGE~~~DL~~ 328 (340)
T COG0552 292 TKLDGTAKGGIILSIAYEL----G-IPIKFIG--VGEGYDDLRP 328 (340)
T ss_pred EecccCCCcceeeeHHHHh----C-CCEEEEe--CCCChhhccc
Confidence 9999643321 11111221 1 2555543 3788888753
No 442
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=3.3e-05 Score=73.67 Aligned_cols=55 Identities=24% Similarity=0.175 Sum_probs=47.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII 174 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~ 174 (363)
.+.+.|.+++||++|-|. .....+.+.++.+++.....+..+...|+..|+.|+.
T Consensus 77 s~~v~~~~~~~~~~l~~~---~~r~~~~~e~~v~~D~~l~l~~~gp~sFtgeD~~el~ 131 (531)
T KOG1191|consen 77 SVMVPKRRNAGLRALYNP---EVRVYVVDEDGVTRDRALGLYFLGPQSFTGEDVVELQ 131 (531)
T ss_pred ccccCCCCccccccccCh---hhcccccCCCCcchhhhhhccccCCceeeeeeeEEEE
Confidence 688999999999999998 3334467888999999999988888999999999874
No 443
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.63 E-value=0.0014 Score=56.17 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEE
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL 155 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~ 155 (363)
..-|+|+|++|||||||+++|+..........+.||+..-.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~ 44 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRP 44 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCC
Confidence 34699999999999999999987542223344566665433
No 444
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.52 E-value=0.014 Score=53.28 Aligned_cols=111 Identities=11% Similarity=0.152 Sum_probs=65.7
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh-------------
Q 017937 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK------------- 177 (363)
Q Consensus 111 ~~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~------------- 177 (363)
+..|.+.+.|+|++|-|||+++.++....... .+ ... ....+..+.+|.-....
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d-~~~-----------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SD-EDA-----------ERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CC-CCC-----------ccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 34477789999999999999999998765321 11 111 11466777776532211
Q ss_pred ---hhhHHHHHHHHHHhhccccceEEEEeeCCCCC----chHHHHHHHhcccc--CCCCCEEEEEcC
Q 017937 178 ---IHMLDSMMMKNVRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDH--KDKLPILLVLNK 235 (363)
Q Consensus 178 ---~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~----~~~~~~~~~~~~~~--~~~~piilV~NK 235 (363)
.... ......+...++.+.+=++|+|=-+.. ......++..++.+ ..++|++.||++
T Consensus 124 ~~~~~~~-~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 124 YRPRDRV-AKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred cCCCCCH-HHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 0011 122334456678888889999965432 22233344443332 267899999865
No 445
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.39 E-value=0.0027 Score=55.41 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
+...|+|+|++|||||||+++|....
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 34478899999999999999997543
No 446
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.33 E-value=0.003 Score=55.77 Aligned_cols=23 Identities=43% Similarity=0.706 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.|+++|++|||||||+|.+.|-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998754
No 447
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.32 E-value=0.0034 Score=49.47 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+|+|.|.|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 448
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.24 E-value=0.04 Score=44.13 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
..+.++|++|+|||+|++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999988743
No 449
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.23 E-value=0.0045 Score=42.59 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 017937 117 YVAVLGKPNVGKSTLANQMI 136 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~ 136 (363)
...|.|+.|+|||||+.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999875
No 450
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.0027 Score=53.55 Aligned_cols=41 Identities=27% Similarity=0.333 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI 157 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~ 157 (363)
.-+++.|++|||||||+.+|+... ...-....|||.+-.+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gE 45 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGE 45 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCC
Confidence 368999999999999999998766 33333344555443333
No 451
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.13 E-value=0.34 Score=43.51 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 017937 118 VAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 118 i~i~G~~~~GKSSLln~l~~ 137 (363)
|+++|.|||||||+...|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999998864
No 452
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.10 E-value=0.014 Score=55.51 Aligned_cols=43 Identities=26% Similarity=0.451 Sum_probs=28.3
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHH--hhccccceEEEEeeCCCCC
Q 017937 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVR--SAGINADCIVVLVDACKAP 209 (363)
Q Consensus 162 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~--~~~~~ad~ii~VvD~~~~~ 209 (363)
.+.+.++||+|-.+.. +.+++.+. ...-+.|=++||+|+.-+.
T Consensus 182 ~~DvvIvDTAGRl~id-----e~Lm~El~~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 182 GYDVVIVDTAGRLHID-----EELMDELKEIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred CCCEEEEeCCCccccc-----HHHHHHHHHHHhhcCCCeEEEEEecccch
Confidence 4579999999953322 22222222 2245789999999998765
No 453
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.08 E-value=0.023 Score=49.97 Aligned_cols=101 Identities=7% Similarity=0.073 Sum_probs=58.7
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC----chHHHHHHHhccccCCCCCEEEEEcCCC
Q 017937 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKD 237 (363)
Q Consensus 162 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~----~~~~~~~~~~~~~~~~~~piilV~NK~D 237 (363)
++.+.|+||+|..... ....+..+|+||+=+-.+... .....++.+..+......|.-|++|++.
T Consensus 83 ~~d~VlvDleG~as~~-----------~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~ 151 (231)
T PF07015_consen 83 GFDFVLVDLEGGASEL-----------NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVP 151 (231)
T ss_pred CCCEEEEeCCCCCchh-----------HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCC
Confidence 4678999999942211 112256799888766554322 1223445555444457899999999997
Q ss_pred CCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHH
Q 017937 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (363)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~ 276 (363)
-............+.. ..|+|.+.-.......+++.
T Consensus 152 ~~~~~~~~~~~~e~~~---~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 152 AARLTRAQRIISEQLE---SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred cchhhHHHHHHHHHHh---cCCccccccccHHHHHHHHH
Confidence 4422222222222222 24788887777666666655
No 454
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.05 E-value=0.0059 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.|+++|++|+|||||++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 68999999999999999998854
No 455
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.00 E-value=0.006 Score=49.58 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.4
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 017937 118 VAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 118 i~i~G~~~~GKSSLln~l~~~ 138 (363)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999875
No 456
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.99 E-value=0.0057 Score=53.71 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.|+|+|++|||||||+|.+-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 79999999999999999987743
No 457
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.99 E-value=0.0062 Score=49.15 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKL 140 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~ 140 (363)
-.++|+|..|+|||||++.|.|...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 3899999999999999999998643
No 458
>PF05729 NACHT: NACHT domain
Probab=95.98 E-value=0.03 Score=46.30 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.++|.|.+|+|||+++..+...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 4889999999999999988753
No 459
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.98 E-value=0.043 Score=46.11 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=39.6
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh--ccccceEEEEeeCCCCCchHHHHHHHhccccCCCCC-EEEEEcCCC
Q 017937 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA--GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKD 237 (363)
Q Consensus 161 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~--~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~p-iilV~NK~D 237 (363)
..+.+.++|||+..... .... +..+|.+++|+............+.+.++. .+.+ .-+|+|+.+
T Consensus 66 ~~yD~VIiD~pp~~~~~-----------~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~--~~~~~~gvv~N~~~ 132 (169)
T cd02037 66 GELDYLVIDMPPGTGDE-----------HLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKK--VNIPILGVVENMSY 132 (169)
T ss_pred CCCCEEEEeCCCCCcHH-----------HHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHh--cCCCeEEEEEcCCc
Confidence 46789999999853211 0111 257899999998765443333344444444 3444 457899987
Q ss_pred C
Q 017937 238 L 238 (363)
Q Consensus 238 l 238 (363)
.
T Consensus 133 ~ 133 (169)
T cd02037 133 F 133 (169)
T ss_pred c
Confidence 5
No 460
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.95 E-value=0.0072 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+.+.++|+|.+|+|||||+.+++..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4558999999999999999999864
No 461
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.92 E-value=0.0065 Score=49.54 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
|.|+|+|..|+|||||+..|++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998764
No 462
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.91 E-value=0.023 Score=48.85 Aligned_cols=108 Identities=17% Similarity=0.216 Sum_probs=56.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCC-CCchhhhhhHHHHHHHHHHhhc-c
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTP-GIIEKKIHMLDSMMMKNVRSAG-I 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~Dtp-G~~~~~~~~~~~~~~~~~~~~~-~ 194 (363)
-|.+.|.||+||||+.+-|...=....-..+..+.+. ....+||-. +...+.+ .+.+.+.....+ .
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy---------~~~i~~DEslpi~ke~y---res~~ks~~rlldS 70 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDY---------LRGILWDESLPILKEVY---RESFLKSVERLLDS 70 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhh---------hhheecccccchHHHHH---HHHHHHHHHHHHHH
Confidence 5889999999999999887642111111222222221 234456643 2212222 122222222211 1
Q ss_pred ccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCC
Q 017937 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl 238 (363)
..+--++++|.++-.......+....+. .+.+..++-.++-+
T Consensus 71 alkn~~VIvDdtNYyksmRrqL~ceak~--~~tt~ciIyl~~pl 112 (261)
T COG4088 71 ALKNYLVIVDDTNYYKSMRRQLACEAKE--RKTTWCIIYLRTPL 112 (261)
T ss_pred HhcceEEEEecccHHHHHHHHHHHHHHh--cCCceEEEEEccCH
Confidence 2234567788887665555555555555 56777777777654
No 463
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.88 E-value=0.0067 Score=51.05 Aligned_cols=24 Identities=46% Similarity=0.614 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKL 140 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~ 140 (363)
+|+|+|++|+|||||+|-+.|-..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 799999999999999999987543
No 464
>PRK07261 topology modulation protein; Provisional
Probab=95.85 E-value=0.0071 Score=51.13 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
+|+|+|.+|+|||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 465
>PRK04195 replication factor C large subunit; Provisional
Probab=95.84 E-value=0.16 Score=50.35 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..+.|.|+||+||||+++++...
T Consensus 40 ~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999764
No 466
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.84 E-value=0.0083 Score=42.40 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 017937 118 VAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 118 i~i~G~~~~GKSSLln~l~~~ 138 (363)
|++.|.+|+||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 467
>PRK08181 transposase; Validated
Probab=95.82 E-value=0.019 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
..+.++|++|+|||.|+.++..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~ 128 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL 128 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH
Confidence 3799999999999999999865
No 468
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.82 E-value=0.0052 Score=51.40 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999865
No 469
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=95.77 E-value=0.064 Score=45.45 Aligned_cols=67 Identities=24% Similarity=0.185 Sum_probs=45.0
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 161 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
..+.+.++|||+.... .....+..+|.+++++..+.........+.+.++. .+.|+.+|+||+|...
T Consensus 91 ~~~d~viiDtpp~~~~-----------~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~--~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC-----------PVIASLTGADAALLVTEPTPSGLHDLERAVELVRH--FGIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcH-----------HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHH--cCCCEEEEEeCCCCCc
Confidence 4578999999974221 12233678999999999875443333344444444 4678899999999754
No 470
>PRK08118 topology modulation protein; Reviewed
Probab=95.71 E-value=0.0089 Score=50.35 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+|.|+|++|+|||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998753
No 471
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.69 E-value=0.01 Score=51.83 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+...|+|+|.+|+|||||+++|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3347999999999999999999863
No 472
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=95.68 E-value=0.0084 Score=58.24 Aligned_cols=57 Identities=35% Similarity=0.541 Sum_probs=41.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecC---CCCceEEEEEEEEeCCCeeEEEEeCCCC
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTN---KPQTTRHRILGICSGPEYQMILYDTPGI 173 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~i~l~DtpG~ 173 (363)
.|+++|+..+|||||+|.|.|.+|..... ..+||+......+.+-...+.++|.-|-
T Consensus 39 VVavmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKGIWlar~~~i~p~i~vmDvEGT 98 (772)
T KOG2203|consen 39 VVAVMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKGIWLARCAGIEPCILVMDVEGT 98 (772)
T ss_pred EEEEecCcccchHHHHHHHhccChHHHHhhhccccccchhhHHhhcCCCCceEEEecccC
Confidence 79999999999999999999998864322 3345655554445444455788898774
No 473
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.67 E-value=0.013 Score=56.33 Aligned_cols=75 Identities=20% Similarity=0.203 Sum_probs=48.7
Q ss_pred EEEeC-CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC---------chH---HHHHHHhccc
Q 017937 156 GICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP---------ERI---DEILEEGVGD 222 (363)
Q Consensus 156 ~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~---------~~~---~~~~~~~~~~ 222 (363)
..+.. .+..+.++|++|...++ +.|..++.+.++||||++.++-. ... ...+..++..
T Consensus 228 ~~f~~~~~~~~~~~DvGGqr~eR---------kKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~ 298 (389)
T PF00503_consen 228 IDFNFSGSRKFRLIDVGGQRSER---------KKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN 298 (389)
T ss_dssp EEEEE-TTEEEEEEEETSSGGGG---------GGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred EEEEeecccccceecCCCCchhh---------hhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence 34455 77899999999964433 34566788999999999986321 112 1222232222
Q ss_pred -cCCCCCEEEEEcCCCCC
Q 017937 223 -HKDKLPILLVLNKKDLI 239 (363)
Q Consensus 223 -~~~~~piilV~NK~Dl~ 239 (363)
...+.|+||++||.|+.
T Consensus 299 ~~~~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 299 PWFKNTPIILFLNKIDLF 316 (389)
T ss_dssp GGGTTSEEEEEEE-HHHH
T ss_pred cccccCceEEeeecHHHH
Confidence 12579999999999974
No 474
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.66 E-value=0.0092 Score=48.43 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=18.5
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 017937 118 VAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 118 i~i~G~~~~GKSSLln~l~~ 137 (363)
|.++|.||+|||||+..|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 475
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.0098 Score=50.61 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+|+|+|+||+||||+..+|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999865
No 476
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.59 E-value=0.014 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..|+|+|++|+|||||++.|.+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37999999999999999999875
No 477
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.56 E-value=0.013 Score=46.63 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
..+.++|++|+|||+++..+...-
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 379999999999999999998754
No 478
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.55 E-value=0.011 Score=46.92 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 017937 118 VAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 118 i~i~G~~~~GKSSLln~l~~~ 138 (363)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998765
No 479
>PRK08233 hypothetical protein; Provisional
Probab=95.53 E-value=0.012 Score=49.83 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
...|+|.|.+|+|||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999763
No 480
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.53 E-value=0.012 Score=51.02 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.-.|+|+|++|+|||||+.++-+-+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCc
Confidence 3379999999999999999987654
No 481
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=95.52 E-value=0.018 Score=52.13 Aligned_cols=59 Identities=27% Similarity=0.362 Sum_probs=39.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccc--cceecCCCCceEEEEEEE---EeCCCeeEEEEeCCCCch
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK--LSIVTNKPQTTRHRILGI---CSGPEYQMILYDTPGIIE 175 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~--~~~~~~~~~~t~~~~~~~---~~~~~~~i~l~DtpG~~~ 175 (363)
.|+|+|...+|||.|+|.|++.. |.........|....... ....+..+.++||.|+.+
T Consensus 23 vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 23 VVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp EEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred EEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 79999999999999999999753 222222233444333222 134567899999999855
No 482
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.50 E-value=0.11 Score=47.07 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=15.9
Q ss_pred EEEEEcCCCCChHHHHHHH
Q 017937 117 YVAVLGKPNVGKSTLANQM 135 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l 135 (363)
+|++.|..||||||+.-.|
T Consensus 2 ~i~v~gKGGvGKTT~a~nL 20 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNL 20 (267)
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 5888899999999976554
No 483
>PHA02518 ParA-like protein; Provisional
Probab=95.49 E-value=0.14 Score=44.50 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=37.3
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC-c---hHHHHHHHhccccCCCCC-EEEEEcCC
Q 017937 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-E---RIDEILEEGVGDHKDKLP-ILLVLNKK 236 (363)
Q Consensus 162 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-~---~~~~~~~~~~~~~~~~~p-iilV~NK~ 236 (363)
.+.+.++||||.... .....+..||.+|+++..+... . .....+.. ........| ..++.|+.
T Consensus 76 ~~d~viiD~p~~~~~-----------~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iv~n~~ 143 (211)
T PHA02518 76 GYDYVVVDGAPQDSE-----------LARAALRIADMVLIPVQPSPFDIWAAPDLVELIKA-RQEVTDGLPKFAFIISRA 143 (211)
T ss_pred cCCEEEEeCCCCccH-----------HHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHH-HHhhCCCCceEEEEEecc
Confidence 468999999984221 1234467899999999886432 1 12222222 111112344 45677887
Q ss_pred CCC
Q 017937 237 DLI 239 (363)
Q Consensus 237 Dl~ 239 (363)
+..
T Consensus 144 ~~~ 146 (211)
T PHA02518 144 IKN 146 (211)
T ss_pred CCc
Confidence 643
No 484
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.46 E-value=0.013 Score=51.12 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+...|+|.|.+|||||||.+.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5568999999999999999998763
No 485
>PRK14530 adenylate kinase; Provisional
Probab=95.44 E-value=0.014 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
.++|+|+|.|||||||+.+.|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999864
No 486
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.40 E-value=0.014 Score=49.76 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
.+.|+++|.+||||||+++.|..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999973
No 487
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.38 E-value=0.015 Score=44.93 Aligned_cols=20 Identities=35% Similarity=0.569 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 017937 117 YVAVLGKPNVGKSTLANQMI 136 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~ 136 (363)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 69999999999999999976
No 488
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.35 E-value=0.012 Score=47.69 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhc
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
...|+|.|.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 3567999999999999999999873
No 489
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.33 E-value=0.016 Score=49.75 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
...++++|++|+|||||+++|++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999874
No 490
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=95.32 E-value=0.012 Score=61.07 Aligned_cols=83 Identities=20% Similarity=0.305 Sum_probs=48.5
Q ss_pred EcCCCCChHHHHHHHhccccceecC--CCCceEEEEEEEEeC---CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 121 LGKPNVGKSTLANQMIGQKLSIVTN--KPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 121 ~G~~~~GKSSLln~l~~~~~~~~~~--~~~~t~~~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
+|.-++|||||+|.|.|..|..... ..+||+......... ....+.++|+-|........-...-.+.+.-++.-
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~~~fe~~~alf~la~ 80 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGRERGEDQDFERKSALFALAV 80 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCCCchhhccccchHHHHHHHHHHh
Confidence 5899999999999999999874332 234565433222222 23578899998853211111111112333445667
Q ss_pred cceEEEEe
Q 017937 196 ADCIVVLV 203 (363)
Q Consensus 196 ad~ii~Vv 203 (363)
+|++|+=+
T Consensus 81 s~~~iiN~ 88 (742)
T PF05879_consen 81 SDVLIINM 88 (742)
T ss_pred hhheeeeh
Confidence 88776554
No 491
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.30 E-value=0.014 Score=49.62 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
-.++++|+.|+|||||++.+.|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 389999999999999999999853
No 492
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.27 E-value=0.015 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.++|+|++|||||||+++|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 493
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.27 E-value=0.015 Score=49.74 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.|+|+|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999764
No 494
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.23 E-value=0.016 Score=50.63 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|+.|+|||||++.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
No 495
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.22 E-value=0.016 Score=49.19 Aligned_cols=22 Identities=41% Similarity=0.401 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
-.++++|+.|+|||||++.+.+
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 3899999999999999998864
No 496
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.20 E-value=0.016 Score=50.79 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
-.++++|+.|+|||||++.|.|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999853
No 497
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.19 E-value=0.015 Score=50.37 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 017937 118 VAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 118 i~i~G~~~~GKSSLln~l~~~ 138 (363)
|+|.|.+|||||||+++|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999998764
No 498
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.18 E-value=0.017 Score=50.77 Aligned_cols=24 Identities=42% Similarity=0.609 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
-.++|+|+.|+|||||++.|.|..
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999853
No 499
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.16 E-value=0.017 Score=51.43 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++|+|+.|+|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 500
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.15 E-value=0.018 Score=49.50 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++|+|+.|+|||||++.+.|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
Done!