Query 017937
Match_columns 363
No_of_seqs 583 out of 3467
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 07:19:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iev_A GTP-binding protein ERA 100.0 1.4E-43 4.9E-48 328.1 20.4 252 110-363 5-263 (308)
2 1wf3_A GTP-binding protein; GT 100.0 5.9E-43 2E-47 322.4 18.9 247 113-363 5-253 (301)
3 1ega_A Protein (GTP-binding pr 100.0 2E-40 6.7E-45 306.0 20.1 248 113-363 6-254 (301)
4 1mky_A Probable GTP-binding pr 99.9 4.6E-28 1.6E-32 234.8 7.1 230 116-361 2-238 (439)
5 2hjg_A GTP-binding protein ENG 99.9 6.3E-28 2.1E-32 233.6 3.1 223 116-361 4-233 (436)
6 2dyk_A GTP-binding protein; GT 99.9 3.4E-25 1.2E-29 184.2 11.9 160 116-283 2-161 (161)
7 3gee_A MNME, tRNA modification 99.9 2.1E-25 7.1E-30 216.9 11.8 208 62-283 184-397 (476)
8 4dcu_A GTP-binding protein ENG 99.9 2.4E-26 8.1E-31 223.8 4.7 226 112-360 20-252 (456)
9 4dhe_A Probable GTP-binding pr 99.9 2.4E-24 8.3E-29 189.4 16.3 170 114-285 28-212 (223)
10 4dkx_A RAS-related protein RAB 99.9 8.1E-25 2.8E-29 191.8 11.7 162 112-284 10-176 (216)
11 2aka_B Dynamin-1; fusion prote 99.9 4.1E-25 1.4E-29 203.3 6.6 205 113-322 24-291 (299)
12 1zj6_A ADP-ribosylation factor 99.9 2.9E-23 9.9E-28 177.5 17.4 164 114-290 15-184 (187)
13 3pqc_A Probable GTP-binding pr 99.9 2.7E-23 9.3E-28 178.2 17.2 167 113-284 21-194 (195)
14 3geh_A MNME, tRNA modification 99.9 9.7E-25 3.3E-29 211.4 9.0 210 62-286 176-386 (462)
15 2qu8_A Putative nucleolar GTP- 99.9 2.5E-23 8.5E-28 184.0 17.3 171 113-284 27-205 (228)
16 2gj8_A MNME, tRNA modification 99.9 4.5E-24 1.5E-28 180.5 11.8 162 115-284 4-166 (172)
17 1svi_A GTP-binding protein YSX 99.9 2.4E-23 8.1E-28 179.0 16.5 166 113-283 21-194 (195)
18 2fg5_A RAB-22B, RAS-related pr 99.9 1.3E-23 4.5E-28 180.6 14.1 163 114-287 22-189 (192)
19 2nzj_A GTP-binding protein REM 99.9 8.2E-24 2.8E-28 178.3 12.3 161 114-283 3-168 (175)
20 1f6b_A SAR1; gtpases, N-termin 99.9 2.1E-23 7.1E-28 180.5 14.8 156 114-282 24-197 (198)
21 3iby_A Ferrous iron transport 99.9 1E-23 3.5E-28 189.7 12.0 166 116-291 2-173 (256)
22 1fzq_A ADP-ribosylation factor 99.9 1.2E-22 4.1E-27 173.0 18.1 158 114-284 15-178 (181)
23 3q72_A GTP-binding protein RAD 99.9 1.4E-23 4.9E-28 175.4 12.1 156 116-282 3-162 (166)
24 1r2q_A RAS-related protein RAB 99.9 2.1E-23 7.3E-28 174.6 13.0 160 114-284 5-169 (170)
25 4bas_A ADP-ribosylation factor 99.9 3.9E-23 1.3E-27 178.1 14.8 162 110-284 12-189 (199)
26 1c1y_A RAS-related protein RAP 99.9 4E-23 1.4E-27 172.6 14.3 159 114-283 2-166 (167)
27 1m2o_B GTP-binding protein SAR 99.9 6.6E-23 2.3E-27 176.1 16.0 156 114-282 22-190 (190)
28 2efe_B Small GTP-binding prote 99.9 6.3E-23 2.2E-27 173.9 15.6 161 114-285 11-176 (181)
29 2h17_A ADP-ribosylation factor 99.9 4.5E-23 1.5E-27 175.5 14.7 159 111-282 17-181 (181)
30 1z0j_A RAB-22, RAS-related pro 99.9 5.6E-23 1.9E-27 172.2 14.7 161 114-284 5-169 (170)
31 1r8s_A ADP-ribosylation factor 99.9 7.7E-23 2.6E-27 170.6 15.4 155 117-284 2-162 (164)
32 1zd9_A ADP-ribosylation factor 99.9 1.5E-22 5.1E-27 173.4 16.9 159 114-284 21-185 (188)
33 1upt_A ARL1, ADP-ribosylation 99.9 9.1E-23 3.1E-27 171.2 15.3 158 114-284 6-169 (171)
34 1x3s_A RAS-related protein RAB 99.9 4.4E-23 1.5E-27 177.1 13.3 167 114-291 14-185 (195)
35 1ek0_A Protein (GTP-binding pr 99.9 3.4E-23 1.2E-27 173.4 12.1 160 115-284 3-169 (170)
36 2h57_A ADP-ribosylation factor 99.9 9.8E-23 3.3E-27 174.7 15.2 161 113-284 19-187 (190)
37 2wji_A Ferrous iron transport 99.9 1.7E-23 5.7E-28 175.6 10.0 160 115-283 3-164 (165)
38 3tkl_A RAS-related protein RAB 99.9 7E-23 2.4E-27 176.1 14.1 160 114-284 15-179 (196)
39 3a1s_A Iron(II) transport prot 99.9 3.8E-23 1.3E-27 186.2 12.9 163 114-283 4-166 (258)
40 1wms_A RAB-9, RAB9, RAS-relate 99.9 8.4E-23 2.9E-27 172.5 13.9 160 114-284 6-174 (177)
41 2xtp_A GTPase IMAP family memb 99.9 3.1E-24 1.1E-28 193.6 5.3 185 112-299 19-224 (260)
42 2il1_A RAB12; G-protein, GDP, 99.9 6.9E-23 2.4E-27 176.1 13.4 160 113-282 24-188 (192)
43 2b6h_A ADP-ribosylation factor 99.9 1.6E-22 5.5E-27 173.9 15.5 158 114-284 28-191 (192)
44 2g6b_A RAS-related protein RAB 99.9 4.4E-23 1.5E-27 174.8 11.8 160 114-284 9-174 (180)
45 3gj0_A GTP-binding nuclear pro 99.9 6.4E-24 2.2E-28 186.7 6.7 164 113-288 13-179 (221)
46 2fn4_A P23, RAS-related protei 99.9 6.4E-23 2.2E-27 173.7 12.2 161 111-283 5-171 (181)
47 1mh1_A RAC1; GTP-binding, GTPa 99.9 7.1E-23 2.4E-27 174.3 12.5 163 114-287 4-183 (186)
48 2y8e_A RAB-protein 6, GH09086P 99.9 6E-23 2E-27 173.5 11.7 159 114-284 13-177 (179)
49 3tw8_B RAS-related protein RAB 99.9 3.7E-23 1.3E-27 175.1 10.4 157 114-283 8-170 (181)
50 2j1l_A RHO-related GTP-binding 99.9 6.8E-23 2.3E-27 179.4 12.2 160 114-284 33-209 (214)
51 1z0f_A RAB14, member RAS oncog 99.9 1.2E-22 4.1E-27 171.6 13.3 159 114-283 14-177 (179)
52 1ksh_A ARF-like protein 2; sma 99.9 2E-22 6.8E-27 172.0 14.6 158 114-284 17-180 (186)
53 4dsu_A GTPase KRAS, isoform 2B 99.9 1.5E-22 5E-27 172.8 13.8 158 114-283 3-165 (189)
54 1g16_A RAS-related protein SEC 99.9 9.7E-23 3.3E-27 170.8 12.4 158 115-283 3-164 (170)
55 3reg_A RHO-like small GTPase; 99.9 4.9E-23 1.7E-27 177.1 10.7 161 114-285 22-189 (194)
56 4djt_A GTP-binding nuclear pro 99.9 9.4E-23 3.2E-27 178.6 12.5 167 114-290 10-181 (218)
57 2qpt_A EH domain-containing pr 99.9 4.6E-26 1.6E-30 225.6 -9.8 227 114-362 64-335 (550)
58 2oil_A CATX-8, RAS-related pro 99.9 9.1E-23 3.1E-27 175.2 12.0 159 114-283 24-187 (193)
59 1u8z_A RAS-related protein RAL 99.9 8.1E-23 2.8E-27 170.6 11.3 157 114-283 3-166 (168)
60 2iwr_A Centaurin gamma 1; ANK 99.9 1.4E-22 4.8E-27 171.6 12.8 155 113-283 5-168 (178)
61 2bme_A RAB4A, RAS-related prot 99.9 1.6E-22 5.5E-27 172.3 13.3 158 114-283 9-172 (186)
62 1jwy_B Dynamin A GTPase domain 99.9 2.8E-23 9.6E-28 192.5 9.1 202 114-322 23-297 (315)
63 2hup_A RAS-related protein RAB 99.9 1.8E-22 6.3E-27 174.8 13.6 159 114-283 28-192 (201)
64 3i8s_A Ferrous iron transport 99.9 2.9E-23 1E-27 188.6 8.9 165 114-285 2-170 (274)
65 3kkq_A RAS-related protein M-R 99.9 1.8E-22 6.2E-27 171.6 13.1 158 112-282 15-180 (183)
66 2lkc_A Translation initiation 99.9 8.7E-23 3E-27 172.6 10.9 158 114-284 7-171 (178)
67 3q3j_B RHO-related GTP-binding 99.9 4.9E-23 1.7E-27 180.4 9.6 163 113-286 25-205 (214)
68 1kao_A RAP2A; GTP-binding prot 99.9 6.9E-23 2.4E-27 170.9 10.1 156 114-282 2-164 (167)
69 3t5g_A GTP-binding protein RHE 99.9 5.8E-23 2E-27 174.4 9.6 163 113-287 4-172 (181)
70 2atx_A Small GTP binding prote 99.9 1.8E-22 6E-27 173.6 12.8 158 114-282 17-191 (194)
71 2fh5_B SR-beta, signal recogni 99.9 2.8E-22 9.5E-27 175.1 14.1 159 114-282 6-214 (214)
72 1xzp_A Probable tRNA modificat 99.9 4.2E-23 1.4E-27 200.8 9.6 161 116-283 244-404 (482)
73 3clv_A RAB5 protein, putative; 99.9 7E-22 2.4E-26 170.5 16.1 156 114-283 6-203 (208)
74 3cph_A RAS-related protein SEC 99.9 2E-22 6.8E-27 175.6 12.8 159 114-283 19-181 (213)
75 1vg8_A RAS-related protein RAB 99.9 2E-22 6.8E-27 174.9 12.4 161 114-284 7-175 (207)
76 2a5j_A RAS-related protein RAB 99.9 1.5E-22 5.1E-27 173.7 11.5 159 114-283 20-183 (191)
77 2ew1_A RAS-related protein RAB 99.9 1.4E-22 4.8E-27 175.8 11.2 159 114-283 25-188 (201)
78 4gzl_A RAS-related C3 botulinu 99.9 1.9E-22 6.6E-27 175.1 12.1 158 114-282 29-203 (204)
79 1z06_A RAS-related protein RAB 99.9 2.7E-22 9.4E-27 171.7 12.9 162 113-283 18-187 (189)
80 2gf9_A RAS-related protein RAB 99.9 1.8E-22 6.3E-27 172.8 11.8 158 115-283 22-184 (189)
81 2hjg_A GTP-binding protein ENG 99.9 7.1E-23 2.4E-27 198.2 10.3 169 114-284 174-349 (436)
82 2hxs_A RAB-26, RAS-related pro 99.9 1.1E-22 3.7E-27 172.0 10.2 161 114-286 5-175 (178)
83 3ihw_A Centg3; RAS, centaurin, 99.9 4.3E-22 1.5E-26 170.1 13.7 155 111-283 16-179 (184)
84 2wjg_A FEOB, ferrous iron tran 99.9 1.5E-22 5.1E-27 172.9 10.8 166 112-286 4-171 (188)
85 1moz_A ARL1, ADP-ribosylation 99.9 4E-22 1.4E-26 169.4 13.3 157 114-283 17-179 (183)
86 3oes_A GTPase rhebl1; small GT 99.9 4E-23 1.4E-27 178.9 7.2 163 111-285 20-188 (201)
87 3dz8_A RAS-related protein RAB 99.9 8.1E-23 2.8E-27 175.4 9.1 160 114-283 22-185 (191)
88 2a9k_A RAS-related protein RAL 99.9 3.2E-22 1.1E-26 170.2 12.5 158 113-283 16-180 (187)
89 3bwd_D RAC-like GTP-binding pr 99.9 5E-23 1.7E-27 174.7 7.4 159 114-283 7-180 (182)
90 2ce2_X GTPase HRAS; signaling 99.9 6.1E-22 2.1E-26 164.8 13.8 157 115-283 3-164 (166)
91 2erx_A GTP-binding protein DI- 99.9 2.5E-22 8.5E-27 168.4 11.5 159 115-284 3-167 (172)
92 3k53_A Ferrous iron transport 99.9 2.9E-22 1E-26 181.8 12.5 166 114-285 2-167 (271)
93 2j0v_A RAC-like GTP-binding pr 99.9 1.5E-22 5.3E-27 176.5 10.2 161 114-285 8-181 (212)
94 2fu5_C RAS-related protein RAB 99.9 6.9E-23 2.3E-27 174.3 7.8 157 115-283 8-170 (183)
95 4dcu_A GTP-binding protein ENG 99.9 1.9E-22 6.3E-27 196.3 11.8 169 114-284 194-369 (456)
96 1ky3_A GTP-binding protein YPT 99.9 3.1E-22 1.1E-26 169.6 11.7 159 114-283 7-177 (182)
97 2p5s_A RAS and EF-hand domain 99.9 3.1E-22 1.1E-26 173.0 11.9 160 114-283 27-196 (199)
98 3b1v_A Ferrous iron uptake tra 99.9 1.2E-22 4E-27 184.1 9.6 162 115-284 3-164 (272)
99 2o52_A RAS-related protein RAB 99.9 1.8E-22 6.2E-27 174.7 10.3 158 114-283 24-187 (200)
100 2x77_A ADP-ribosylation factor 99.9 4.2E-22 1.4E-26 170.5 12.5 158 114-284 21-184 (189)
101 2q3h_A RAS homolog gene family 99.9 1.8E-22 6.2E-27 174.5 10.2 160 113-283 18-194 (201)
102 2bov_A RAla, RAS-related prote 99.9 3.9E-22 1.3E-26 172.7 12.3 158 113-283 12-176 (206)
103 3llu_A RAS-related GTP-binding 99.9 9.5E-22 3.2E-26 169.5 14.6 166 110-282 15-195 (196)
104 1zbd_A Rabphilin-3A; G protein 99.9 3.6E-22 1.2E-26 172.9 11.9 159 115-283 8-170 (203)
105 2gf0_A GTP-binding protein DI- 99.9 7.2E-22 2.5E-26 170.1 13.8 160 114-285 7-172 (199)
106 3con_A GTPase NRAS; structural 99.9 6.7E-22 2.3E-26 169.3 13.3 158 113-283 19-182 (190)
107 2gco_A H9, RHO-related GTP-bin 99.9 5.8E-22 2E-26 171.6 12.9 159 114-282 24-198 (201)
108 1z2a_A RAS-related protein RAB 99.9 4.1E-22 1.4E-26 166.6 11.3 157 114-283 4-166 (168)
109 1z08_A RAS-related protein RAB 99.9 1.2E-22 4E-27 170.4 7.8 158 114-283 5-168 (170)
110 3cbq_A GTP-binding protein REM 99.9 4.5E-22 1.5E-26 171.7 11.7 160 114-284 22-188 (195)
111 3q85_A GTP-binding protein REM 99.9 4.3E-22 1.5E-26 166.9 11.1 158 116-283 3-166 (169)
112 3bc1_A RAS-related protein RAB 99.9 1.6E-21 5.4E-26 166.9 14.8 158 114-283 10-184 (195)
113 2fv8_A H6, RHO-related GTP-bin 99.9 5.6E-22 1.9E-26 172.5 11.9 160 114-284 24-200 (207)
114 2f7s_A C25KG, RAS-related prot 99.9 7.6E-22 2.6E-26 172.7 12.3 159 114-283 24-198 (217)
115 2bcg_Y Protein YP2, GTP-bindin 99.9 5.9E-22 2E-26 172.0 11.5 159 114-283 7-170 (206)
116 2atv_A RERG, RAS-like estrogen 99.9 1.1E-21 3.7E-26 169.1 12.9 158 114-283 27-190 (196)
117 2g3y_A GTP-binding protein GEM 99.9 5.9E-22 2E-26 173.0 11.0 161 114-283 36-202 (211)
118 3o47_A ADP-ribosylation factor 99.9 1.7E-21 5.7E-26 181.6 14.5 158 114-284 164-327 (329)
119 3izq_1 HBS1P, elongation facto 99.9 5E-22 1.7E-26 198.9 11.6 204 114-337 166-435 (611)
120 3t1o_A Gliding protein MGLA; G 99.9 4.6E-22 1.6E-26 170.8 9.9 159 114-283 13-191 (198)
121 3qq5_A Small GTP-binding prote 99.9 2.2E-22 7.7E-27 192.5 8.5 164 114-285 33-197 (423)
122 1m7b_A RND3/RHOE small GTP-bin 99.9 4.3E-22 1.5E-26 169.8 8.7 158 114-282 6-181 (184)
123 3cpj_B GTP-binding protein YPT 99.9 5.4E-22 1.8E-26 174.7 8.9 160 114-284 12-176 (223)
124 3c5c_A RAS-like protein 12; GD 99.9 7.4E-22 2.5E-26 169.0 9.1 156 114-283 20-185 (187)
125 2x2e_A Dynamin-1; nitration, h 99.9 7.4E-23 2.5E-27 192.7 2.7 213 114-331 30-315 (353)
126 2e87_A Hypothetical protein PH 99.9 1.1E-20 3.8E-25 178.1 17.6 166 114-283 166-335 (357)
127 1wxq_A GTP-binding protein; st 99.9 9.6E-23 3.3E-27 194.0 3.2 191 117-316 2-301 (397)
128 1lnz_A SPO0B-associated GTP-bi 99.9 1.1E-21 3.7E-26 183.0 10.2 169 116-292 159-340 (342)
129 1mky_A Probable GTP-binding pr 99.9 2.1E-21 7.1E-26 188.0 12.4 169 114-284 179-355 (439)
130 1gwn_A RHO-related GTP-binding 99.8 1E-21 3.6E-26 170.8 8.5 158 114-282 27-202 (205)
131 2yc2_C IFT27, small RAB-relate 99.8 1E-21 3.5E-26 170.2 7.8 159 114-283 19-191 (208)
132 3l0i_B RAS-related protein RAB 99.8 2.9E-23 9.9E-28 179.5 -2.1 160 114-284 32-196 (199)
133 3lvq_E ARF-GAP with SH3 domain 99.8 9.3E-21 3.2E-25 186.5 14.8 160 114-286 321-486 (497)
134 2cjw_A GTP-binding protein GEM 99.8 2.6E-21 9E-26 166.4 9.5 160 115-283 6-171 (192)
135 3zvr_A Dynamin-1; hydrolase, D 99.8 1.6E-21 5.6E-26 197.0 9.1 213 114-332 50-336 (772)
136 3r7w_A Gtpase1, GTP-binding pr 99.8 2.8E-20 9.5E-25 171.7 16.4 163 115-283 3-180 (307)
137 3j2k_7 ERF3, eukaryotic polype 99.8 1.6E-20 5.4E-25 181.5 15.4 152 114-276 16-217 (439)
138 2cxx_A Probable GTP-binding pr 99.8 3.5E-20 1.2E-24 158.2 15.1 160 116-284 2-184 (190)
139 3th5_A RAS-related C3 botulinu 99.7 1.8E-22 6E-27 175.1 0.0 158 114-282 29-203 (204)
140 2zej_A Dardarin, leucine-rich 99.8 1.8E-20 6.2E-25 159.8 12.3 159 116-284 3-178 (184)
141 3lxw_A GTPase IMAP family memb 99.8 9E-21 3.1E-25 169.6 10.7 177 114-293 20-218 (247)
142 1wb1_A Translation elongation 99.8 4.6E-20 1.6E-24 180.1 15.1 160 113-283 17-188 (482)
143 3tr5_A RF-3, peptide chain rel 99.8 2.8E-21 9.7E-26 190.1 6.5 117 114-241 12-149 (528)
144 2qtf_A Protein HFLX, GTP-bindi 99.8 2.8E-20 9.7E-25 175.1 12.6 169 117-287 181-357 (364)
145 3sjy_A Translation initiation 99.8 8E-20 2.7E-24 175.0 15.7 162 114-285 7-193 (403)
146 3izy_P Translation initiation 99.8 1.2E-21 4.3E-26 192.0 1.6 159 114-284 3-168 (537)
147 2wkq_A NPH1-1, RAS-related C3 99.8 3.8E-20 1.3E-24 172.3 10.9 159 114-283 154-329 (332)
148 1f60_A Elongation factor EEF1A 99.8 3.1E-21 1.1E-25 187.4 3.5 149 114-273 6-201 (458)
149 3t5d_A Septin-7; GTP-binding p 99.8 1.7E-19 5.9E-24 163.8 14.8 167 115-284 8-204 (274)
150 3cb4_D GTP-binding protein LEP 99.8 7.1E-20 2.4E-24 182.1 11.5 196 115-336 4-221 (599)
151 3lxx_A GTPase IMAP family memb 99.8 2.5E-19 8.6E-24 159.3 11.8 168 114-284 28-214 (239)
152 1kk1_A EIF2gamma; initiation o 99.8 1.4E-18 4.8E-23 166.7 17.6 161 115-285 10-201 (410)
153 1s0u_A EIF-2-gamma, translatio 99.8 1.2E-18 4.3E-23 167.0 17.1 162 114-285 7-199 (408)
154 1zo1_I IF2, translation initia 99.8 1E-20 3.6E-25 184.0 2.6 157 114-282 3-165 (501)
155 2c78_A Elongation factor TU-A; 99.8 3.5E-19 1.2E-23 170.7 13.2 161 114-285 10-213 (405)
156 3mca_A HBS1, elongation factor 99.8 8E-21 2.7E-25 189.7 1.8 159 114-283 176-396 (592)
157 2ywe_A GTP-binding protein LEP 99.8 7.1E-19 2.4E-23 174.6 14.5 199 114-338 5-225 (600)
158 2elf_A Protein translation elo 99.8 6.2E-19 2.1E-23 166.4 13.0 146 117-284 23-180 (370)
159 1d2e_A Elongation factor TU (E 99.8 3.3E-18 1.1E-22 163.4 17.2 159 115-284 3-195 (397)
160 1pui_A ENGB, probable GTP-bind 99.8 4.1E-18 1.4E-22 148.0 15.7 167 114-286 25-201 (210)
161 3c5h_A Glucocorticoid receptor 99.8 9.1E-20 3.1E-24 163.9 5.2 87 195-282 162-253 (255)
162 3dpu_A RAB family protein; roc 99.8 4.1E-19 1.4E-23 176.1 9.8 160 113-287 39-211 (535)
163 3r7w_B Gtpase2, GTP-binding pr 99.8 1.8E-18 6.3E-23 158.7 13.0 158 117-284 1-174 (331)
164 3p26_A Elongation factor 1 alp 99.8 9.5E-19 3.2E-23 171.3 11.7 150 114-273 32-227 (483)
165 1zun_B Sulfate adenylate trans 99.8 3.8E-18 1.3E-22 164.9 15.7 149 115-274 24-214 (434)
166 2f9l_A RAB11B, member RAS onco 99.8 2.4E-18 8.3E-23 148.5 12.5 157 115-283 5-167 (199)
167 1g7s_A Translation initiation 99.8 7.2E-19 2.5E-23 175.1 10.1 157 114-283 4-217 (594)
168 3p32_A Probable GTPase RV1496/ 99.7 4.8E-19 1.6E-23 166.7 5.4 185 114-318 78-318 (355)
169 1jny_A EF-1-alpha, elongation 99.7 5.1E-18 1.7E-22 163.9 12.5 150 114-274 5-203 (435)
170 1dar_A EF-G, elongation factor 99.7 1.3E-17 4.4E-22 169.5 15.4 117 114-241 11-144 (691)
171 2www_A Methylmalonic aciduria 99.7 2.7E-19 9.2E-24 167.8 2.7 186 115-321 74-316 (349)
172 2rdo_7 EF-G, elongation factor 99.7 2.9E-17 9.9E-22 167.1 17.4 117 114-241 9-149 (704)
173 3vqt_A RF-3, peptide chain rel 99.7 3.2E-18 1.1E-22 169.2 9.2 226 114-358 30-368 (548)
174 3avx_A Elongation factor TS, e 99.7 3.3E-17 1.1E-21 170.3 16.3 161 113-284 294-486 (1289)
175 2h5e_A Peptide chain release f 99.7 4.5E-17 1.5E-21 160.4 16.5 117 114-241 12-149 (529)
176 2j69_A Bacterial dynamin-like 99.7 7.5E-18 2.6E-22 171.3 10.9 162 114-283 68-324 (695)
177 1oix_A RAS-related protein RAB 99.7 1.9E-17 6.4E-22 142.1 11.2 156 115-282 29-190 (191)
178 1nrj_B SR-beta, signal recogni 99.7 8.4E-18 2.9E-22 147.0 8.5 144 114-270 11-170 (218)
179 2xex_A Elongation factor G; GT 99.7 6.9E-17 2.4E-21 164.1 13.6 117 114-241 9-142 (693)
180 2p67_A LAO/AO transport system 99.7 1E-17 3.5E-22 156.7 6.3 184 114-318 55-295 (341)
181 2dy1_A Elongation factor G; tr 99.7 1.7E-16 5.8E-21 160.7 15.6 115 114-239 8-139 (665)
182 1r5b_A Eukaryotic peptide chai 99.7 2.4E-17 8.2E-22 160.5 8.8 150 115-275 43-243 (467)
183 1h65_A Chloroplast outer envel 99.7 1.7E-16 5.8E-21 143.7 13.2 127 114-242 38-170 (270)
184 4a9a_A Ribosome-interacting GT 99.7 1.1E-16 3.9E-21 150.2 12.1 119 116-238 73-194 (376)
185 3t34_A Dynamin-related protein 99.7 6.1E-17 2.1E-21 152.7 9.3 160 114-277 33-254 (360)
186 2qag_A Septin-2, protein NEDD5 99.7 2.4E-16 8.1E-21 148.4 11.9 164 115-283 37-236 (361)
187 1udx_A The GTP-binding protein 99.7 3E-16 1E-20 149.6 12.1 164 116-286 158-327 (416)
188 3def_A T7I23.11 protein; chlor 99.7 3.6E-16 1.2E-20 140.9 11.6 125 114-240 35-165 (262)
189 2ged_A SR-beta, signal recogni 99.6 3.9E-16 1.4E-20 133.5 8.5 125 114-250 47-180 (193)
190 3j25_A Tetracycline resistance 99.6 2.2E-16 7.6E-21 159.1 6.7 198 116-338 3-280 (638)
191 2wsm_A Hydrogenase expression/ 99.6 1.5E-15 5.3E-20 132.8 9.5 153 114-284 29-214 (221)
192 1yrb_A ATP(GTP)binding protein 99.6 7.4E-15 2.5E-19 131.9 13.4 166 114-285 13-258 (262)
193 2qm8_A GTPase/ATPase; G protei 99.6 9.7E-16 3.3E-20 142.9 7.7 185 114-319 54-296 (337)
194 4fn5_A EF-G 1, elongation fact 99.6 1.7E-14 5.8E-19 147.2 13.8 116 114-240 12-151 (709)
195 1jal_A YCHF protein; nucleotid 99.6 2.7E-14 9.1E-19 133.4 13.1 89 116-207 3-108 (363)
196 2qag_C Septin-7; cell cycle, c 99.5 7.5E-14 2.6E-18 133.2 13.8 163 116-283 32-226 (418)
197 2qnr_A Septin-2, protein NEDD5 99.5 6.5E-14 2.2E-18 128.5 11.7 163 115-283 18-213 (301)
198 2dby_A GTP-binding protein; GD 99.5 1.1E-13 3.8E-18 129.9 9.2 86 117-207 3-111 (368)
199 1n0u_A EF-2, elongation factor 99.4 3.6E-14 1.2E-18 147.0 5.1 115 114-239 18-163 (842)
200 2hf9_A Probable hydrogenase ni 99.4 3.5E-13 1.2E-17 118.1 9.6 57 226-282 164-222 (226)
201 2ohf_A Protein OLA1, GTP-bindi 99.4 1.7E-13 5.7E-18 129.2 4.1 189 115-324 22-230 (396)
202 1tq4_A IIGP1, interferon-induc 99.3 1.1E-11 3.6E-16 118.0 13.3 191 114-314 68-289 (413)
203 2v3c_C SRP54, signal recogniti 99.3 9.7E-15 3.3E-19 140.1 -7.8 223 116-354 100-390 (432)
204 3ec1_A YQEH GTPase; atnos1, at 99.3 5.9E-14 2E-18 132.4 -2.8 147 116-271 163-318 (369)
205 4fid_A G protein alpha subunit 99.3 4.4E-12 1.5E-16 117.3 9.4 119 155-282 153-326 (340)
206 3h2y_A GTPase family protein; 99.3 1.1E-13 3.9E-18 130.4 -1.5 145 116-267 161-313 (368)
207 3ohm_A Guanine nucleotide-bind 99.3 1.7E-11 5.9E-16 112.9 10.8 119 156-283 160-317 (327)
208 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 5.5E-13 1.9E-17 125.9 -0.0 178 114-323 19-231 (392)
209 2qag_B Septin-6, protein NEDD5 99.2 1.8E-10 6E-15 109.5 14.1 146 117-265 44-217 (427)
210 1puj_A YLQF, conserved hypothe 99.2 9.1E-12 3.1E-16 113.0 2.8 166 168-361 4-175 (282)
211 1cip_A Protein (guanine nucleo 99.1 2.4E-11 8.3E-16 113.5 5.5 119 156-283 186-343 (353)
212 2j37_W Signal recognition part 99.1 1.4E-10 4.8E-15 112.9 11.1 160 114-281 100-310 (504)
213 1u0l_A Probable GTPase ENGC; p 99.1 9.3E-11 3.2E-15 107.5 9.1 135 130-280 32-169 (301)
214 3h2y_A GTPase family protein; 99.1 4.5E-11 1.5E-15 112.5 3.9 116 187-330 61-182 (368)
215 3ec1_A YQEH GTPase; atnos1, at 99.1 9E-11 3.1E-15 110.6 4.9 140 189-360 65-221 (369)
216 1zcb_A G alpha I/13; GTP-bindi 99.0 1.9E-10 6.4E-15 107.8 6.8 117 157-282 195-351 (362)
217 3sop_A Neuronal-specific septi 99.0 1.9E-09 6.6E-14 97.0 12.3 132 116-250 3-164 (270)
218 1azs_C GS-alpha; complex (lyas 99.0 3.8E-10 1.3E-14 106.7 7.4 118 157-283 211-384 (402)
219 2xtz_A Guanine nucleotide-bind 99.0 3E-10 1E-14 106.0 6.2 113 161-282 181-343 (354)
220 3cnl_A YLQF, putative uncharac 99.0 1E-11 3.6E-16 111.4 -4.5 135 188-361 14-154 (262)
221 3l82_B F-box only protein 4; T 98.9 8.2E-09 2.8E-13 87.9 9.6 100 185-284 115-223 (227)
222 1puj_A YLQF, conserved hypothe 98.8 4.6E-09 1.6E-13 95.1 5.3 59 114-175 119-177 (282)
223 2yv5_A YJEQ protein; hydrolase 98.8 1.8E-08 6.3E-13 92.1 8.6 85 191-280 75-165 (302)
224 1f5n_A Interferon-induced guan 98.7 2.1E-08 7.1E-13 99.3 6.2 60 114-175 37-103 (592)
225 3dm5_A SRP54, signal recogniti 98.6 1.1E-07 3.8E-12 90.7 10.8 147 115-274 100-281 (443)
226 3l2o_B F-box only protein 4; s 98.6 1.3E-07 4.3E-12 84.5 7.8 98 187-284 202-308 (312)
227 3cnl_A YLQF, putative uncharac 98.5 2.6E-08 8.7E-13 89.2 2.7 58 116-176 100-157 (262)
228 3kl4_A SRP54, signal recogniti 98.3 7.4E-07 2.5E-11 85.0 7.7 145 115-272 97-278 (433)
229 3szr_A Interferon-induced GTP- 98.3 4.1E-06 1.4E-10 83.8 11.6 78 163-242 147-230 (608)
230 1j8m_F SRP54, signal recogniti 98.2 5.7E-06 2E-10 75.2 9.2 146 115-274 98-281 (297)
231 1t9h_A YLOQ, probable GTPase E 98.0 2.4E-06 8.4E-11 77.8 3.7 84 192-278 83-171 (307)
232 3q5d_A Atlastin-1; G protein, 97.9 8.7E-06 3E-10 77.9 6.1 62 113-175 65-152 (447)
233 2xxa_A Signal recognition part 97.9 4.1E-05 1.4E-09 73.2 9.1 118 115-240 100-254 (433)
234 2rcn_A Probable GTPase ENGC; Y 97.7 9E-05 3.1E-09 68.8 8.5 109 193-333 128-240 (358)
235 3e70_C DPA, signal recognition 97.6 0.00014 4.8E-09 66.9 8.4 148 114-274 128-310 (328)
236 1rj9_A FTSY, signal recognitio 97.5 0.00066 2.2E-08 61.7 11.3 122 115-240 102-261 (304)
237 2px0_A Flagellar biosynthesis 97.4 0.00039 1.3E-08 63.0 8.3 118 115-241 105-254 (296)
238 2yhs_A FTSY, cell division pro 97.4 0.00071 2.4E-08 65.2 10.2 149 115-273 293-479 (503)
239 1zu4_A FTSY; GTPase, signal re 97.3 0.002 6.9E-08 58.9 11.7 74 161-240 190-268 (320)
240 1t9h_A YLOQ, probable GTPase E 97.2 8.1E-05 2.8E-09 67.8 1.4 56 116-175 174-236 (307)
241 4dzz_A Plasmid partitioning pr 97.2 0.00047 1.6E-08 58.4 5.8 66 162-239 75-143 (206)
242 3ney_A 55 kDa erythrocyte memb 97.1 0.00018 6E-09 61.1 1.9 43 111-153 15-58 (197)
243 2rcn_A Probable GTPase ENGC; Y 97.0 0.00046 1.6E-08 64.0 4.0 25 116-140 216-240 (358)
244 2ffh_A Protein (FFH); SRP54, s 97.0 0.0025 8.5E-08 60.6 9.1 73 161-240 179-251 (425)
245 1bif_A 6-phosphofructo-2-kinas 97.0 0.00012 3.9E-09 71.0 -0.2 102 115-222 39-147 (469)
246 1nij_A Hypothetical protein YJ 96.9 0.0038 1.3E-07 57.0 10.0 24 115-138 4-27 (318)
247 2yv5_A YJEQ protein; hydrolase 96.9 0.001 3.6E-08 60.4 6.0 23 116-139 166-188 (302)
248 1vma_A Cell division protein F 96.8 0.00047 1.6E-08 62.7 2.9 22 116-137 105-126 (306)
249 2og2_A Putative signal recogni 96.7 0.01 3.5E-07 55.1 11.1 121 116-240 158-317 (359)
250 1u0l_A Probable GTPase ENGC; p 96.7 0.0011 3.7E-08 60.2 4.4 25 116-140 170-194 (301)
251 1kgd_A CASK, peripheral plasma 96.4 0.0018 6.2E-08 53.9 3.5 23 116-138 6-28 (180)
252 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.13 4.3E-06 45.3 15.5 22 116-137 5-26 (260)
253 3cwq_A Para family chromosome 96.4 0.0029 1E-07 54.0 4.6 68 161-240 66-134 (209)
254 1ye8_A Protein THEP1, hypothet 96.3 0.002 6.7E-08 53.7 3.0 23 117-139 2-24 (178)
255 1ex7_A Guanylate kinase; subst 96.3 0.00095 3.3E-08 56.1 1.0 36 118-153 4-40 (186)
256 3end_A Light-independent proto 96.3 0.013 4.5E-07 52.9 8.6 67 162-238 156-225 (307)
257 4ido_A Atlastin-1; GTPase, GTP 96.2 0.0077 2.6E-07 57.3 7.1 23 114-136 66-88 (457)
258 1lvg_A Guanylate kinase, GMP k 96.1 0.0024 8.2E-08 54.1 2.7 22 117-138 6-27 (198)
259 1jbk_A CLPB protein; beta barr 95.9 0.012 4.1E-07 48.4 6.2 23 116-138 44-66 (195)
260 3c8u_A Fructokinase; YP_612366 95.9 0.0045 1.5E-07 52.7 3.4 24 115-138 22-45 (208)
261 3tr0_A Guanylate kinase, GMP k 95.9 0.0046 1.6E-07 52.1 3.4 22 117-138 9-30 (205)
262 1znw_A Guanylate kinase, GMP k 95.9 0.004 1.4E-07 52.9 3.0 23 117-139 22-44 (207)
263 1zp6_A Hypothetical protein AT 95.9 0.005 1.7E-07 51.3 3.5 23 116-138 10-32 (191)
264 3a00_A Guanylate kinase, GMP k 95.9 0.0039 1.3E-07 52.1 2.8 23 117-139 3-25 (186)
265 1knq_A Gluconate kinase; ALFA/ 95.8 0.0065 2.2E-07 49.9 3.8 24 114-137 7-30 (175)
266 1z6g_A Guanylate kinase; struc 95.8 0.0044 1.5E-07 53.3 2.8 23 116-138 24-46 (218)
267 1s96_A Guanylate kinase, GMP k 95.8 0.0052 1.8E-07 52.9 3.3 24 116-139 17-40 (219)
268 4b4t_J 26S protease regulatory 95.8 0.063 2.1E-06 50.4 10.8 22 117-138 184-205 (405)
269 3tau_A Guanylate kinase, GMP k 95.7 0.0065 2.2E-07 51.7 3.6 24 116-139 9-32 (208)
270 3asz_A Uridine kinase; cytidin 95.7 0.0058 2E-07 51.9 3.2 23 116-138 7-29 (211)
271 3tif_A Uncharacterized ABC tra 95.7 0.0059 2E-07 53.2 3.2 24 116-139 32-55 (235)
272 4b4t_L 26S protease subunit RP 95.6 0.058 2E-06 51.3 10.2 22 117-138 217-238 (437)
273 4gp7_A Metallophosphoesterase; 95.6 0.0059 2E-07 50.3 2.9 21 117-137 11-31 (171)
274 4b4t_H 26S protease regulatory 95.6 0.14 4.7E-06 48.9 12.5 22 117-138 245-266 (467)
275 2pcj_A ABC transporter, lipopr 95.6 0.0066 2.3E-07 52.5 3.1 23 117-139 32-54 (224)
276 1htw_A HI0065; nucleotide-bind 95.5 0.0072 2.5E-07 49.2 3.0 23 117-139 35-57 (158)
277 2j41_A Guanylate kinase; GMP, 95.5 0.0081 2.8E-07 50.6 3.5 24 116-139 7-30 (207)
278 4b4t_K 26S protease regulatory 95.4 0.067 2.3E-06 50.7 9.8 22 117-138 208-229 (428)
279 2onk_A Molybdate/tungstate ABC 95.4 0.008 2.7E-07 52.5 3.3 24 116-139 25-48 (240)
280 4eun_A Thermoresistant glucoki 95.4 0.0084 2.9E-07 50.6 3.3 24 115-138 29-52 (200)
281 2cbz_A Multidrug resistance-as 95.4 0.0079 2.7E-07 52.4 3.2 24 116-139 32-55 (237)
282 4b4t_I 26S protease regulatory 95.4 0.083 2.8E-06 49.9 10.1 22 117-138 218-239 (437)
283 1np6_A Molybdopterin-guanine d 95.4 0.0087 3E-07 49.5 3.1 23 116-138 7-29 (174)
284 1mv5_A LMRA, multidrug resista 95.4 0.0086 2.9E-07 52.4 3.2 23 117-139 30-52 (243)
285 2ff7_A Alpha-hemolysin translo 95.4 0.0087 3E-07 52.5 3.2 23 117-139 37-59 (247)
286 3gfo_A Cobalt import ATP-bindi 95.4 0.0085 2.9E-07 53.5 3.2 23 117-139 36-58 (275)
287 1b0u_A Histidine permease; ABC 95.4 0.0085 2.9E-07 53.1 3.2 23 117-139 34-56 (262)
288 2eyu_A Twitching motility prot 95.3 0.0097 3.3E-07 52.7 3.5 25 114-138 24-48 (261)
289 1g6h_A High-affinity branched- 95.3 0.0089 3E-07 52.8 3.2 23 117-139 35-57 (257)
290 1y63_A LMAJ004144AAA protein; 95.3 0.012 4.2E-07 48.9 3.9 25 114-138 9-33 (184)
291 4g1u_C Hemin import ATP-bindin 95.3 0.0087 3E-07 53.2 3.2 23 117-139 39-61 (266)
292 2bbw_A Adenylate kinase 4, AK4 95.3 0.01 3.5E-07 51.9 3.6 21 116-136 28-48 (246)
293 2pze_A Cystic fibrosis transme 95.3 0.0091 3.1E-07 51.7 3.2 24 116-139 35-58 (229)
294 1sgw_A Putative ABC transporte 95.3 0.0086 2.9E-07 51.4 3.0 23 117-139 37-59 (214)
295 3b85_A Phosphate starvation-in 95.3 0.008 2.7E-07 51.3 2.6 22 117-138 24-45 (208)
296 1kag_A SKI, shikimate kinase I 95.3 0.0082 2.8E-07 49.1 2.7 22 117-138 6-27 (173)
297 2qor_A Guanylate kinase; phosp 95.2 0.0099 3.4E-07 50.3 3.1 24 115-138 12-35 (204)
298 2ghi_A Transport protein; mult 95.2 0.0099 3.4E-07 52.6 3.2 23 116-138 47-69 (260)
299 1ji0_A ABC transporter; ATP bi 95.2 0.01 3.4E-07 51.9 3.2 23 117-139 34-56 (240)
300 2olj_A Amino acid ABC transpor 95.2 0.0099 3.4E-07 52.7 3.2 22 117-138 52-73 (263)
301 2i3b_A HCR-ntpase, human cance 95.2 0.0087 3E-07 50.3 2.6 22 117-138 3-24 (189)
302 2qi9_C Vitamin B12 import ATP- 95.2 0.01 3.6E-07 52.1 3.2 23 117-139 28-50 (249)
303 2d2e_A SUFC protein; ABC-ATPas 95.2 0.011 3.7E-07 52.0 3.3 22 117-138 31-52 (250)
304 1vpl_A ABC transporter, ATP-bi 95.2 0.011 3.6E-07 52.3 3.2 23 117-139 43-65 (256)
305 2v9p_A Replication protein E1; 95.2 0.011 3.9E-07 53.4 3.4 24 115-138 126-149 (305)
306 2ixe_A Antigen peptide transpo 95.2 0.011 3.7E-07 52.7 3.2 24 116-139 46-69 (271)
307 3lw7_A Adenylate kinase relate 95.2 0.011 3.8E-07 48.0 3.1 19 117-135 3-21 (179)
308 2wwf_A Thymidilate kinase, put 95.1 0.015 5.3E-07 49.1 4.1 24 114-137 9-32 (212)
309 2zu0_C Probable ATP-dependent 95.1 0.011 3.8E-07 52.5 3.3 22 117-138 48-69 (267)
310 2bdt_A BH3686; alpha-beta prot 95.1 0.011 3.8E-07 49.2 3.0 21 117-137 4-24 (189)
311 2ihy_A ABC transporter, ATP-bi 95.1 0.011 3.8E-07 52.9 3.2 23 117-139 49-71 (279)
312 2f1r_A Molybdopterin-guanine d 95.0 0.0061 2.1E-07 50.3 1.1 22 117-138 4-25 (171)
313 2nq2_C Hypothetical ABC transp 95.0 0.012 4.2E-07 51.8 3.1 23 117-139 33-55 (253)
314 2yz2_A Putative ABC transporte 95.0 0.013 4.3E-07 52.1 3.2 23 117-139 35-57 (266)
315 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.21 7.1E-06 43.4 11.2 23 116-138 40-62 (262)
316 3uie_A Adenylyl-sulfate kinase 95.0 0.014 4.8E-07 49.1 3.3 24 115-138 25-48 (200)
317 1d2n_A N-ethylmaleimide-sensit 95.0 0.15 5.1E-06 44.9 10.3 24 115-138 64-87 (272)
318 3kb2_A SPBC2 prophage-derived 95.0 0.013 4.6E-07 47.6 3.1 21 117-137 3-23 (173)
319 3t15_A Ribulose bisphosphate c 95.0 0.063 2.1E-06 48.2 7.7 22 117-138 38-59 (293)
320 3aez_A Pantothenate kinase; tr 94.9 0.014 4.7E-07 53.2 3.4 25 114-138 89-113 (312)
321 1qhx_A CPT, protein (chloramph 94.9 0.017 5.9E-07 47.3 3.5 21 117-137 5-25 (178)
322 3n70_A Transport activator; si 94.9 0.033 1.1E-06 44.2 5.1 22 117-138 26-47 (145)
323 3ec2_A DNA replication protein 94.8 0.012 4.2E-07 48.5 2.6 23 116-138 39-61 (180)
324 2pjz_A Hypothetical protein ST 94.8 0.015 5E-07 51.6 3.2 23 117-139 32-54 (263)
325 3lnc_A Guanylate kinase, GMP k 94.8 0.011 3.7E-07 51.1 2.3 23 116-138 28-51 (231)
326 1kht_A Adenylate kinase; phosp 94.8 0.016 5.5E-07 48.0 3.3 22 116-137 4-25 (192)
327 1ly1_A Polynucleotide kinase; 94.8 0.016 5.6E-07 47.4 3.3 21 117-137 4-24 (181)
328 1xjc_A MOBB protein homolog; s 94.8 0.017 5.7E-07 47.6 3.2 22 116-137 5-26 (169)
329 1nn5_A Similar to deoxythymidy 94.8 0.018 6.3E-07 48.7 3.5 24 114-137 8-31 (215)
330 3iij_A Coilin-interacting nucl 94.8 0.02 6.8E-07 47.2 3.6 24 114-137 10-33 (180)
331 4a74_A DNA repair and recombin 94.7 0.015 5.3E-07 49.7 3.0 23 116-138 26-48 (231)
332 3jvv_A Twitching mobility prot 94.7 0.017 5.7E-07 53.6 3.4 25 114-138 122-146 (356)
333 3t61_A Gluconokinase; PSI-biol 94.7 0.017 6E-07 48.6 3.3 23 116-138 19-41 (202)
334 1cke_A CK, MSSA, protein (cyti 94.7 0.017 5.7E-07 49.5 3.2 22 116-137 6-27 (227)
335 3nh6_A ATP-binding cassette SU 94.7 0.01 3.5E-07 53.8 1.9 23 116-138 81-103 (306)
336 3vaa_A Shikimate kinase, SK; s 94.7 0.018 6.3E-07 48.4 3.3 22 116-137 26-47 (199)
337 2qt1_A Nicotinamide riboside k 94.7 0.024 8.2E-07 47.9 4.0 23 116-138 22-44 (207)
338 2kjq_A DNAA-related protein; s 94.7 0.016 5.5E-07 46.5 2.8 22 117-138 38-59 (149)
339 2if2_A Dephospho-COA kinase; a 94.7 0.017 5.8E-07 48.6 3.0 21 117-137 3-23 (204)
340 2cdn_A Adenylate kinase; phosp 94.6 0.024 8.1E-07 47.7 3.9 24 114-137 19-42 (201)
341 2plr_A DTMP kinase, probable t 94.6 0.02 7E-07 48.2 3.5 23 115-137 4-26 (213)
342 2bbs_A Cystic fibrosis transme 94.6 0.021 7.1E-07 51.4 3.6 24 116-139 65-88 (290)
343 2rhm_A Putative kinase; P-loop 94.6 0.021 7E-07 47.5 3.4 22 116-137 6-27 (193)
344 3fvq_A Fe(3+) IONS import ATP- 94.6 0.018 6.2E-07 53.3 3.2 23 117-139 32-54 (359)
345 1sq5_A Pantothenate kinase; P- 94.6 0.021 7.3E-07 51.7 3.7 25 114-138 79-103 (308)
346 1tev_A UMP-CMP kinase; ploop, 94.6 0.02 6.9E-07 47.5 3.3 23 115-137 3-25 (196)
347 1rz3_A Hypothetical protein rb 94.5 0.024 8.1E-07 47.8 3.6 23 115-137 22-44 (201)
348 2v1u_A Cell division control p 94.5 0.17 5.6E-06 46.7 9.8 23 116-138 45-67 (387)
349 2jeo_A Uridine-cytidine kinase 94.5 0.022 7.4E-07 49.7 3.4 23 116-138 26-48 (245)
350 1odf_A YGR205W, hypothetical 3 94.5 0.024 8.1E-07 51.0 3.7 24 114-137 30-53 (290)
351 1uf9_A TT1252 protein; P-loop, 94.5 0.023 7.9E-07 47.6 3.4 25 114-138 7-31 (203)
352 2chg_A Replication factor C sm 94.5 0.11 3.8E-06 43.5 7.8 22 117-138 40-61 (226)
353 3tui_C Methionine import ATP-b 94.5 0.021 7E-07 53.0 3.3 24 116-139 55-78 (366)
354 1z47_A CYSA, putative ABC-tran 94.4 0.021 7.2E-07 52.8 3.3 23 117-139 43-65 (355)
355 1nks_A Adenylate kinase; therm 94.4 0.022 7.5E-07 47.2 3.1 21 117-137 3-23 (194)
356 2ehv_A Hypothetical protein PH 94.4 0.035 1.2E-06 48.1 4.6 23 115-137 30-52 (251)
357 2jaq_A Deoxyguanosine kinase; 94.4 0.023 7.8E-07 47.6 3.2 21 117-137 2-22 (205)
358 3tqc_A Pantothenate kinase; bi 94.4 0.025 8.6E-07 51.6 3.7 25 114-138 91-115 (321)
359 3cm0_A Adenylate kinase; ATP-b 94.4 0.022 7.6E-07 47.0 3.1 22 116-137 5-26 (186)
360 1jjv_A Dephospho-COA kinase; P 94.4 0.023 8E-07 47.9 3.3 21 117-137 4-24 (206)
361 1ukz_A Uridylate kinase; trans 94.4 0.033 1.1E-06 46.8 4.2 24 114-137 14-37 (203)
362 2yyz_A Sugar ABC transporter, 94.4 0.022 7.5E-07 52.8 3.3 23 117-139 31-53 (359)
363 3te6_A Regulatory protein SIR3 94.3 0.32 1.1E-05 44.1 10.8 25 114-138 44-68 (318)
364 2it1_A 362AA long hypothetical 94.3 0.023 7.8E-07 52.8 3.3 24 116-139 30-53 (362)
365 2pt7_A CAG-ALFA; ATPase, prote 94.3 0.02 7E-07 52.4 2.9 22 117-138 173-194 (330)
366 2yvu_A Probable adenylyl-sulfa 94.3 0.03 1E-06 46.4 3.8 25 114-138 12-36 (186)
367 3zvl_A Bifunctional polynucleo 94.3 0.12 4E-06 49.0 8.3 24 115-138 258-281 (416)
368 3rlf_A Maltose/maltodextrin im 94.3 0.023 7.8E-07 53.1 3.3 23 117-139 31-53 (381)
369 3h4m_A Proteasome-activating n 94.3 0.16 5.3E-06 45.0 8.7 23 116-138 52-74 (285)
370 2gza_A Type IV secretion syste 94.3 0.022 7.5E-07 52.9 3.1 23 116-138 176-198 (361)
371 2c95_A Adenylate kinase 1; tra 94.3 0.028 9.7E-07 46.7 3.5 23 115-137 9-31 (196)
372 2vp4_A Deoxynucleoside kinase; 94.3 0.025 8.4E-07 48.9 3.2 25 114-138 19-43 (230)
373 2ewv_A Twitching motility prot 94.3 0.024 8.3E-07 52.8 3.3 24 115-138 136-159 (372)
374 3trf_A Shikimate kinase, SK; a 94.3 0.027 9.2E-07 46.5 3.3 22 116-137 6-27 (185)
375 2v54_A DTMP kinase, thymidylat 94.3 0.029 9.9E-07 47.1 3.5 24 115-138 4-27 (204)
376 1lw7_A Transcriptional regulat 94.3 0.018 6.1E-07 53.5 2.4 25 115-139 170-194 (365)
377 1g29_1 MALK, maltose transport 94.2 0.024 8.3E-07 52.8 3.3 23 117-139 31-53 (372)
378 1aky_A Adenylate kinase; ATP:A 94.2 0.028 9.6E-07 48.0 3.5 23 115-137 4-26 (220)
379 1v43_A Sugar-binding transport 94.2 0.025 8.4E-07 52.7 3.3 24 116-139 38-61 (372)
380 1qf9_A UMP/CMP kinase, protein 94.2 0.035 1.2E-06 45.9 3.9 22 116-137 7-28 (194)
381 2vli_A Antibiotic resistance p 94.1 0.022 7.5E-07 46.9 2.4 24 114-137 4-27 (183)
382 4e22_A Cytidylate kinase; P-lo 94.1 0.033 1.1E-06 48.8 3.7 22 115-136 27-48 (252)
383 3fb4_A Adenylate kinase; psych 94.1 0.028 9.5E-07 47.7 3.1 21 117-137 2-22 (216)
384 1gvn_B Zeta; postsegregational 94.1 0.032 1.1E-06 50.0 3.6 23 115-137 33-55 (287)
385 1p9r_A General secretion pathw 94.0 0.029 9.8E-07 53.2 3.4 25 114-138 166-190 (418)
386 2x8a_A Nuclear valosin-contain 94.0 0.025 8.5E-07 50.4 2.8 22 117-138 46-67 (274)
387 1zd8_A GTP:AMP phosphotransfer 94.0 0.031 1.1E-06 48.0 3.3 23 115-137 7-29 (227)
388 3gd7_A Fusion complex of cysti 94.0 0.029 1E-06 52.6 3.2 23 116-138 48-70 (390)
389 3dl0_A Adenylate kinase; phosp 93.9 0.031 1.1E-06 47.5 3.1 21 117-137 2-22 (216)
390 2pez_A Bifunctional 3'-phospho 93.9 0.033 1.1E-06 45.8 3.2 23 115-137 5-27 (179)
391 3syl_A Protein CBBX; photosynt 93.9 0.21 7.3E-06 44.6 8.9 23 115-137 67-89 (309)
392 1xwi_A SKD1 protein; VPS4B, AA 93.9 0.29 9.8E-06 44.5 9.7 23 116-138 46-68 (322)
393 3d31_A Sulfate/molybdate ABC t 93.8 0.021 7.3E-07 52.7 2.0 23 117-139 28-50 (348)
394 1ixz_A ATP-dependent metallopr 93.8 0.029 1E-06 49.0 2.8 22 117-138 51-72 (254)
395 4b4t_M 26S protease regulatory 93.8 0.09 3.1E-06 49.9 6.3 22 117-138 217-238 (434)
396 1zak_A Adenylate kinase; ATP:A 93.8 0.035 1.2E-06 47.5 3.2 22 116-137 6-27 (222)
397 3kta_A Chromosome segregation 93.8 0.041 1.4E-06 45.3 3.5 22 116-137 27-48 (182)
398 3b9q_A Chloroplast SRP recepto 93.8 0.034 1.2E-06 50.2 3.2 22 116-137 101-122 (302)
399 2oap_1 GSPE-2, type II secreti 93.8 0.031 1.1E-06 54.4 3.1 22 117-138 262-283 (511)
400 2iyv_A Shikimate kinase, SK; t 93.6 0.034 1.2E-06 45.8 2.8 21 117-137 4-24 (184)
401 3tlx_A Adenylate kinase 2; str 93.6 0.041 1.4E-06 47.9 3.4 24 114-137 28-51 (243)
402 1via_A Shikimate kinase; struc 93.6 0.035 1.2E-06 45.5 2.7 21 117-137 6-26 (175)
403 2bwj_A Adenylate kinase 5; pho 93.6 0.044 1.5E-06 45.7 3.4 22 116-137 13-34 (199)
404 3b9p_A CG5977-PA, isoform A; A 93.6 0.13 4.3E-06 45.9 6.6 23 116-138 55-77 (297)
405 2pt5_A Shikimate kinase, SK; a 93.5 0.041 1.4E-06 44.5 3.1 21 117-137 2-22 (168)
406 3cf0_A Transitional endoplasmi 93.5 0.17 5.7E-06 45.5 7.4 22 117-138 51-72 (301)
407 1oxx_K GLCV, glucose, ABC tran 93.5 0.021 7.1E-07 52.9 1.3 23 117-139 33-55 (353)
408 3eie_A Vacuolar protein sortin 93.5 0.19 6.6E-06 45.5 7.9 23 116-138 52-74 (322)
409 2p5t_B PEZT; postsegregational 93.5 0.033 1.1E-06 48.8 2.5 24 114-137 31-54 (253)
410 2w0m_A SSO2452; RECA, SSPF, un 93.5 0.038 1.3E-06 47.2 2.8 23 116-138 24-46 (235)
411 2npi_A Protein CLP1; CLP1-PCF1 93.4 0.037 1.3E-06 53.1 3.0 25 114-138 137-161 (460)
412 1e4v_A Adenylate kinase; trans 93.4 0.045 1.5E-06 46.5 3.2 21 117-137 2-22 (214)
413 3be4_A Adenylate kinase; malar 93.4 0.039 1.3E-06 47.0 2.8 22 116-137 6-27 (217)
414 3umf_A Adenylate kinase; rossm 93.3 0.063 2.2E-06 46.0 4.0 23 115-137 29-51 (217)
415 1vht_A Dephospho-COA kinase; s 93.3 0.048 1.7E-06 46.4 3.3 22 116-137 5-26 (218)
416 1iqp_A RFCS; clamp loader, ext 93.3 0.27 9.1E-06 44.2 8.5 23 116-138 47-69 (327)
417 2pbr_A DTMP kinase, thymidylat 93.3 0.047 1.6E-06 45.2 3.1 21 117-137 2-22 (195)
418 1gtv_A TMK, thymidylate kinase 93.3 0.021 7.3E-07 48.3 1.0 21 117-137 2-22 (214)
419 3cf2_A TER ATPase, transitiona 93.3 0.2 6.9E-06 51.2 8.3 22 117-138 240-261 (806)
420 1in4_A RUVB, holliday junction 93.3 0.04 1.4E-06 50.5 2.8 22 117-138 53-74 (334)
421 1iy2_A ATP-dependent metallopr 93.3 0.041 1.4E-06 48.9 2.8 22 117-138 75-96 (278)
422 1uj2_A Uridine-cytidine kinase 93.2 0.05 1.7E-06 47.6 3.3 24 114-137 21-44 (252)
423 1cr0_A DNA primase/helicase; R 93.2 0.041 1.4E-06 49.3 2.8 23 116-138 36-58 (296)
424 2z0h_A DTMP kinase, thymidylat 93.2 0.049 1.7E-06 45.2 3.1 22 117-138 2-23 (197)
425 1m7g_A Adenylylsulfate kinase; 93.1 0.056 1.9E-06 45.8 3.4 23 115-137 25-47 (211)
426 1e6c_A Shikimate kinase; phosp 93.1 0.048 1.6E-06 44.3 2.8 21 117-137 4-24 (173)
427 2ze6_A Isopentenyl transferase 93.1 0.046 1.6E-06 48.0 2.8 21 117-137 3-23 (253)
428 2obl_A ESCN; ATPase, hydrolase 93.1 0.052 1.8E-06 50.1 3.3 26 114-139 70-95 (347)
429 3u61_B DNA polymerase accessor 93.0 0.4 1.4E-05 43.3 9.2 22 117-138 50-71 (324)
430 2f6r_A COA synthase, bifunctio 93.0 0.068 2.3E-06 47.7 3.9 24 114-137 74-97 (281)
431 1ak2_A Adenylate kinase isoenz 93.0 0.062 2.1E-06 46.3 3.5 23 115-137 16-38 (233)
432 3nwj_A ATSK2; P loop, shikimat 93.0 0.051 1.7E-06 47.7 3.0 23 115-137 48-70 (250)
433 3vfd_A Spastin; ATPase, microt 92.9 0.19 6.5E-06 46.9 7.0 23 116-138 149-171 (389)
434 3sr0_A Adenylate kinase; phosp 92.9 0.061 2.1E-06 45.7 3.2 21 117-137 2-22 (206)
435 3ozx_A RNAse L inhibitor; ATP 92.9 0.067 2.3E-06 52.4 3.9 23 117-139 27-49 (538)
436 3qf7_A RAD50; ABC-ATPase, ATPa 92.8 0.25 8.7E-06 45.7 7.7 21 116-136 24-44 (365)
437 2cvh_A DNA repair and recombin 92.8 0.068 2.3E-06 45.2 3.5 23 115-137 20-42 (220)
438 2xb4_A Adenylate kinase; ATP-b 92.8 0.06 2.1E-06 46.1 3.2 21 117-137 2-22 (223)
439 3bos_A Putative DNA replicatio 92.8 0.065 2.2E-06 45.8 3.4 24 115-138 52-75 (242)
440 4eaq_A DTMP kinase, thymidylat 92.8 0.073 2.5E-06 45.9 3.7 25 114-138 25-49 (229)
441 3r20_A Cytidylate kinase; stru 92.8 0.065 2.2E-06 46.4 3.3 24 114-137 8-31 (233)
442 2p65_A Hypothetical protein PF 92.7 0.053 1.8E-06 44.3 2.6 24 115-138 43-66 (187)
443 1sxj_A Activator 1 95 kDa subu 92.7 0.21 7E-06 48.6 7.2 23 116-138 78-100 (516)
444 3euj_A Chromosome partition pr 92.7 0.056 1.9E-06 52.0 3.0 22 116-137 30-51 (483)
445 1yqt_A RNAse L inhibitor; ATP- 92.7 0.059 2E-06 52.8 3.3 23 117-139 49-71 (538)
446 2w58_A DNAI, primosome compone 92.7 0.068 2.3E-06 44.8 3.2 23 116-138 55-77 (202)
447 1n0w_A DNA repair protein RAD5 92.6 0.058 2E-06 46.4 2.8 24 115-138 24-47 (243)
448 1f2t_A RAD50 ABC-ATPase; DNA d 92.6 0.077 2.6E-06 42.4 3.3 21 116-136 24-44 (149)
449 1q3t_A Cytidylate kinase; nucl 92.6 0.077 2.6E-06 45.8 3.5 24 114-137 15-38 (236)
450 3hu3_A Transitional endoplasmi 92.5 0.17 5.9E-06 48.9 6.3 22 116-137 239-260 (489)
451 1lv7_A FTSH; alpha/beta domain 92.5 0.07 2.4E-06 46.6 3.2 22 117-138 47-68 (257)
452 1zuh_A Shikimate kinase; alpha 92.5 0.073 2.5E-06 43.1 3.1 21 117-137 9-29 (168)
453 2dpy_A FLII, flagellum-specifi 92.5 0.073 2.5E-06 50.7 3.5 27 113-139 155-181 (438)
454 3b60_A Lipid A export ATP-bind 92.5 0.073 2.5E-06 52.7 3.6 24 116-139 370-393 (582)
455 1svm_A Large T antigen; AAA+ f 92.4 0.078 2.7E-06 49.4 3.5 22 116-137 170-191 (377)
456 3d8b_A Fidgetin-like protein 1 92.3 0.22 7.4E-06 46.0 6.5 23 116-138 118-140 (357)
457 3b5x_A Lipid A export ATP-bind 92.1 0.083 2.8E-06 52.3 3.5 24 116-139 370-393 (582)
458 2yl4_A ATP-binding cassette SU 92.1 0.072 2.5E-06 52.9 3.1 24 116-139 371-394 (595)
459 1qvr_A CLPB protein; coiled co 92.1 0.3 1E-05 50.6 7.8 23 116-138 192-214 (854)
460 3j16_B RLI1P; ribosome recycli 92.1 0.077 2.7E-06 52.7 3.3 23 117-139 105-127 (608)
461 3qf4_B Uncharacterized ABC tra 92.0 0.08 2.7E-06 52.6 3.2 25 115-139 381-405 (598)
462 2grj_A Dephospho-COA kinase; T 91.9 0.097 3.3E-06 43.9 3.2 24 115-138 12-35 (192)
463 3bk7_A ABC transporter ATP-bin 91.8 0.085 2.9E-06 52.5 3.2 24 116-139 118-141 (607)
464 3exa_A TRNA delta(2)-isopenten 91.8 0.1 3.5E-06 47.3 3.4 23 115-137 3-25 (322)
465 3ozx_A RNAse L inhibitor; ATP 91.8 0.088 3E-06 51.5 3.2 23 117-139 296-318 (538)
466 4a82_A Cystic fibrosis transme 91.6 0.07 2.4E-06 52.8 2.3 24 115-138 367-390 (578)
467 1tue_A Replication protein E1; 91.6 0.083 2.8E-06 44.8 2.4 21 117-137 60-80 (212)
468 2qmh_A HPR kinase/phosphorylas 91.5 0.14 4.6E-06 43.2 3.6 24 116-139 35-58 (205)
469 1yqt_A RNAse L inhibitor; ATP- 91.5 0.099 3.4E-06 51.2 3.3 24 116-139 313-336 (538)
470 3ake_A Cytidylate kinase; CMP 91.5 0.12 4E-06 43.3 3.3 21 117-137 4-24 (208)
471 4fcw_A Chaperone protein CLPB; 91.4 0.14 4.7E-06 45.9 3.9 23 116-138 48-70 (311)
472 3qf4_A ABC transporter, ATP-bi 91.3 0.089 3E-06 52.2 2.7 23 116-138 370-392 (587)
473 1nlf_A Regulatory protein REPA 91.3 0.12 4E-06 45.9 3.3 24 114-137 29-52 (279)
474 2zan_A Vacuolar protein sortin 91.2 0.58 2E-05 44.5 8.3 23 116-138 168-190 (444)
475 1ltq_A Polynucleotide kinase; 91.2 0.12 4E-06 46.3 3.3 21 117-137 4-24 (301)
476 1njg_A DNA polymerase III subu 91.2 0.12 4.2E-06 43.8 3.2 21 117-137 47-67 (250)
477 3tqf_A HPR(Ser) kinase; transf 91.1 0.15 5.3E-06 41.8 3.5 24 117-140 18-41 (181)
478 2ocp_A DGK, deoxyguanosine kin 91.1 0.13 4.6E-06 44.4 3.4 23 116-138 3-25 (241)
479 3bk7_A ABC transporter ATP-bin 91.0 0.12 4E-06 51.5 3.3 23 117-139 384-406 (607)
480 1l8q_A Chromosomal replication 90.9 0.13 4.5E-06 46.5 3.3 23 116-138 38-60 (324)
481 1sxj_E Activator 1 40 kDa subu 90.9 0.098 3.3E-06 47.9 2.5 21 117-137 38-58 (354)
482 1a7j_A Phosphoribulokinase; tr 90.9 0.091 3.1E-06 47.1 2.2 24 114-137 4-27 (290)
483 3pvs_A Replication-associated 90.9 0.81 2.8E-05 43.6 8.9 23 116-138 51-73 (447)
484 1fnn_A CDC6P, cell division co 90.9 0.12 4.2E-06 47.7 3.1 22 117-138 46-67 (389)
485 2qby_A CDC6 homolog 1, cell di 90.7 0.13 4.6E-06 47.3 3.2 24 115-138 45-68 (386)
486 3j16_B RLI1P; ribosome recycli 90.6 0.13 4.6E-06 51.0 3.2 24 117-140 380-403 (608)
487 3qks_A DNA double-strand break 90.5 0.16 5.6E-06 42.7 3.3 21 116-136 24-44 (203)
488 3lv8_A DTMP kinase, thymidylat 90.4 0.17 6E-06 43.8 3.5 24 114-137 26-49 (236)
489 3foz_A TRNA delta(2)-isopenten 90.4 0.18 6.3E-06 45.5 3.7 22 116-137 11-32 (316)
490 2dr3_A UPF0273 protein PH0284; 90.4 0.14 4.9E-06 43.9 2.9 22 116-137 24-45 (247)
491 4edh_A DTMP kinase, thymidylat 90.4 0.18 6.1E-06 43.0 3.4 24 114-137 5-28 (213)
492 1p5z_B DCK, deoxycytidine kina 90.4 0.11 3.8E-06 45.6 2.2 25 114-138 23-47 (263)
493 3a8t_A Adenylate isopentenyltr 90.3 0.19 6.4E-06 46.0 3.7 23 116-138 41-63 (339)
494 1qhl_A Protein (cell division 90.3 0.023 8E-07 49.1 -2.2 23 117-139 29-51 (227)
495 3v9p_A DTMP kinase, thymidylat 90.3 0.15 5.2E-06 43.9 3.0 24 114-137 24-47 (227)
496 3ld9_A DTMP kinase, thymidylat 90.3 0.19 6.6E-06 43.1 3.6 24 114-137 20-43 (223)
497 3k9g_A PF-32 protein; ssgcid, 90.3 0.46 1.6E-05 41.5 6.2 66 162-238 144-209 (267)
498 2h92_A Cytidylate kinase; ross 90.2 0.15 5.3E-06 43.1 2.9 22 116-137 4-25 (219)
499 1zcb_A G alpha I/13; GTP-bindi 90.1 0.18 6.2E-06 46.7 3.5 22 114-135 32-53 (362)
500 2b8t_A Thymidine kinase; deoxy 90.1 0.39 1.3E-05 41.2 5.4 22 115-136 12-33 (223)
No 1
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=100.00 E-value=1.4e-43 Score=328.13 Aligned_cols=252 Identities=36% Similarity=0.562 Sum_probs=218.4
Q ss_pred CCCCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhh-hhhHHHHHHH
Q 017937 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKK-IHMLDSMMMK 187 (363)
Q Consensus 110 ~~~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~l~DtpG~~~~~-~~~~~~~~~~ 187 (363)
.++...+.|+++|.+|||||||+|+|++.++..++..+++|+.......... +.++.+|||||+.... ...+...+..
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 4455677999999999999999999999999888999999999988888887 8999999999985422 1456667777
Q ss_pred HHHhhccccceEEEEeeCCCCCchHHHHH-HHhccccCCCCCEEEEEcCCCCC-ChhHHHHHHHHHHhcC-CCCcEEEcc
Q 017937 188 NVRSAGINADCIVVLVDACKAPERIDEIL-EEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFT-DVDEVIPVS 264 (363)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~~~~~~~-~~~~~~~~~~~piilV~NK~Dl~-~~~~~~~~~~~~~~~~-~~~~i~~vS 264 (363)
.+..++..+|++++|+|++++.......+ ...+.. .+.|+++|+||+|+. +..........+.... .+.+++++|
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~--~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vS 162 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP--LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPIS 162 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG--GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh--cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence 88888999999999999998765555444 566655 579999999999998 5555555555565554 467899999
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecC--CCeeEEEE
Q 017937 265 AKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRP--TAKDFIQV 342 (363)
Q Consensus 265 Ak~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~~--~~~~~i~~ 342 (363)
|++|.|+++|+++|.+.++.+++.|+.+..++++.+++++|++||+++..+++++||++.+.+..|++++ ++..+|.+
T Consensus 163 A~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~~~~~~~~~i~a 242 (308)
T 3iev_A 163 ALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKG 242 (308)
T ss_dssp TTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEECSSCTTSEEEEE
T ss_pred CCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEccCCCCeEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887 46789999
Q ss_pred EEEEeeCCceeEEecCCCCCC
Q 017937 343 EIVVEKNSQKIILIGKVSPFL 363 (363)
Q Consensus 343 ~i~~~~~~q~~ivig~~G~~~ 363 (363)
.|+|+|++||.||||++|+||
T Consensus 243 ~i~ve~~~~k~i~ig~~g~~i 263 (308)
T 3iev_A 243 EIIVDRENLKPIIIGKKGQRL 263 (308)
T ss_dssp EEEESSGGGHHHHHCGGGHHH
T ss_pred EEEEccCCcceEEEcCCcHHH
Confidence 999999999999999999875
No 2
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=100.00 E-value=5.9e-43 Score=322.42 Aligned_cols=247 Identities=34% Similarity=0.493 Sum_probs=215.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
.++++|+++|.+|||||||+|+|++.++..++..+++|++.....+...+.++.+|||||+.. ....+...+...+..+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~-~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK-PMDALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCC-CCSHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccc-hhhHHHHHHHHHHHHH
Confidence 477799999999999999999999999888888999999888888878889999999999853 3345666677788888
Q ss_pred ccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhH-HHHHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
++.+|++++|+|++++......++.+.++....+.|+++|+||+|+..... +.+....+ .++.+++++||++|.|+
T Consensus 84 l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL---LPEAEPRMLSALDERQV 160 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT---STTSEEEECCTTCHHHH
T ss_pred HhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh---cCcCcEEEEeCCCCCCH
Confidence 999999999999998877777777766665323799999999999986554 43333333 45567999999999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCC-CCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCCeeEEEEEEEEeeCC
Q 017937 272 EDIRDWILTKLPLGPAYYPKDIV-SEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNS 350 (363)
Q Consensus 272 ~eL~~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~~~~~~~i~~~i~~~~~~ 350 (363)
++|+++|.+.++.+++.|+.+.+ ++.|.++.++|++|++++..++.++||++.+.+..|+.++++..+|.+.|+|+|++
T Consensus 161 ~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~~~~~~~~~i~~~i~ve~~~ 240 (301)
T 1wf3_A 161 AELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPS 240 (301)
T ss_dssp HHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEEEEEESSHH
T ss_pred HHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEecCCCeEEEEEEEEEeeCC
Confidence 99999999999999999999988 99999999999999999999999999999999999998777889999999999999
Q ss_pred ceeEEecCCCCCC
Q 017937 351 QKIILIGKVSPFL 363 (363)
Q Consensus 351 q~~ivig~~G~~~ 363 (363)
|+.||||++|+||
T Consensus 241 ~k~iiig~~g~~l 253 (301)
T 1wf3_A 241 QKAIVIGEGGRKI 253 (301)
T ss_dssp HHHHHHCGGGHHH
T ss_pred ceEEEEeCCchHH
Confidence 9999999999875
No 3
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=100.00 E-value=2e-40 Score=305.99 Aligned_cols=248 Identities=31% Similarity=0.547 Sum_probs=213.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
.++++|+++|++|||||||+|+|++.++..++..+++|++...+.+...+.++.+|||||+.......+...+...+..+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 46679999999999999999999999988778889999888888888888999999999974233344555555556677
Q ss_pred ccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC-hhHHHHHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK-PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~-~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
+..+|++++|+|+++ ......++.+.+.. .+.|+++|+||+|+.. ...+.+....+....++..++++||++|.|+
T Consensus 86 l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp CCCEEEEEEEEETTC-CCHHHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HhcCCEEEEEEeCCC-CCHHHHHHHHHHHh--cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 899999999999987 77777777776654 5799999999999987 4555555555555455557999999999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEecCCCeeEEEEEEEEeeCCc
Q 017937 272 EDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQ 351 (363)
Q Consensus 272 ~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~~~~~~~i~~~i~~~~~~q 351 (363)
++|+++|.+.++.+++.|+.+..++.|.++.++|++|++++..+..++||++.+.+..|+++..+.++|.+.|+|+|++|
T Consensus 163 ~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~~~~~~~~~i~~~i~v~~~~~ 242 (301)
T 1ega_A 163 DTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQ 242 (301)
T ss_dssp HHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEECCSSCSEEEEEEEEESSHHH
T ss_pred HHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEEecCCCeEEEEEEEEEEECCc
Confidence 99999999999999999999999999999999999999999999999999999999999987667899999999999999
Q ss_pred eeEEecCCCCCC
Q 017937 352 KIILIGKVSPFL 363 (363)
Q Consensus 352 ~~ivig~~G~~~ 363 (363)
++|+||++|++|
T Consensus 243 k~i~ig~~G~~~ 254 (301)
T 1ega_A 243 KKMVIGNKGAKI 254 (301)
T ss_dssp HHHHHCGGGHHH
T ss_pred eEEEECCCcHHH
Confidence 999999999864
No 4
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.94 E-value=4.6e-28 Score=234.79 Aligned_cols=230 Identities=23% Similarity=0.254 Sum_probs=152.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
++|+++|.||||||||+|+|++.+.+.+++.+++|++.....+.+.+..+.+|||||+.......+...+...+..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 48999999999999999999999887789999999998888888888999999999975332233444556667788999
Q ss_pred cceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHH
Q 017937 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (363)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~ 275 (363)
||++++|+|++++....+.++..+++. .++|+++|+||+|+..... ......+.. .+..+++++||++|.|+++|+
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~--~~~p~ilv~NK~D~~~~~~-~~~~~~~~~-lg~~~~~~iSA~~g~gv~~L~ 157 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRK--STVDTILVANKAENLREFE-REVKPELYS-LGFGEPIPVSAEHNINLDTML 157 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHH--HTCCEEEEEESCCSHHHHH-HHTHHHHGG-GSSCSCEECBTTTTBSHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccccH-HHHHHHHHh-cCCCCEEEEeccCCCCHHHHH
Confidence 999999999998887777777777765 5799999999999853211 112022222 244468999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec------CC-CeeEEEEEEEEee
Q 017937 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PT-AKDFIQVEIVVEK 348 (363)
Q Consensus 276 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~------~~-~~~~i~~~i~~~~ 348 (363)
++|.+.++..+.........+.+. ++...+++++||||++|.+.+... ++ |.+.+. ..+..
T Consensus 158 ~~i~~~l~~~~~~~~~~~~~~~~~----------kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~--~~i~~ 225 (439)
T 1mky_A 158 ETIIKKLEEKGLDLESKPEITDAI----------KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVD--DEVFI 225 (439)
T ss_dssp HHHHHHHHHTTCCSSSCCCCCSCE----------EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CC--EEEEE
T ss_pred HHHHHhcccccccchhccccccCc----------eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceE--EEEEE
Confidence 999988864321100000001111 345668999999999998865432 22 223333 23355
Q ss_pred CCceeEEecCCCC
Q 017937 349 NSQKIILIGKVSP 361 (363)
Q Consensus 349 ~~q~~ivig~~G~ 361 (363)
+++...+++++|.
T Consensus 226 ~g~~~~l~Dt~G~ 238 (439)
T 1mky_A 226 DGRKYVFVDTAGL 238 (439)
T ss_dssp TTEEEEESSCSCC
T ss_pred CCEEEEEEECCCC
Confidence 6788889999984
No 5
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.94 E-value=6.3e-28 Score=233.65 Aligned_cols=223 Identities=26% Similarity=0.341 Sum_probs=148.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
++|+++|.+|||||||+|+|++..+..+.+.+++|++.......+.+..+.+|||||+.... ..+...+...+..++..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD-EPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC----------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcc-hhHHHHHHHHHHHHHHh
Confidence 58999999999999999999999888889999999999988888888999999999974322 22445566667778899
Q ss_pred cceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHH
Q 017937 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (363)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~ 275 (363)
||++|+|+|++++....+.++...++. .++|+++|+||+|+..... ...+.+ . .+..+++++||++|.|+++|+
T Consensus 83 ad~il~vvD~~~~~~~~d~~~~~~l~~--~~~pvilv~NK~D~~~~~~--~~~~~~-~-lg~~~~~~iSA~~g~gv~~L~ 156 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA--NIYDFY-S-LGFGEPYPISGTHGLGLGDLL 156 (436)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHTT--CCSCEEEEEECCCC-------CCCSSG-G-GSSCCCEECBTTTTBTHHHHH
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCccchh--hHHHHH-H-cCCCCeEEEeCcCCCChHHHH
Confidence 999999999999888777888887776 6899999999999975321 111111 1 233478999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec------CC-CeeEEEEEEEEee
Q 017937 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PT-AKDFIQVEIVVEK 348 (363)
Q Consensus 276 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~------~~-~~~~i~~~i~~~~ 348 (363)
++|.+.+++.+.... .+.+. ++...+++++|||+++|.+.+... ++ +.+.+. ..++.
T Consensus 157 ~~i~~~l~~~~~~~~----~~~~~----------ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~--~~~~~ 220 (436)
T 2hjg_A 157 DAVAEHFKNIPETKY----NEEVI----------QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVD--TSFTY 220 (436)
T ss_dssp HHHHHTGGGCCSSCC----CTTCE----------EEEEECSTTSSHHHHHHHHHTSTTEEEC---------CC--EEEEE
T ss_pred HHHHHhcCccccccc----cccCc----------EEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeE--EEEEE
Confidence 999998875321100 11111 345678999999999988765432 22 333333 23456
Q ss_pred CCceeEEecCCCC
Q 017937 349 NSQKIILIGKVSP 361 (363)
Q Consensus 349 ~~q~~ivig~~G~ 361 (363)
+++...++|++|.
T Consensus 221 ~~~~~~l~DT~G~ 233 (436)
T 2hjg_A 221 NQQEFVIVDTAGM 233 (436)
T ss_dssp TTEEEEETTHHHH
T ss_pred CCeEEEEEECCCc
Confidence 7788999999983
No 6
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.92 E-value=3.4e-25 Score=184.24 Aligned_cols=160 Identities=26% Similarity=0.359 Sum_probs=115.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
++|+++|.+|||||||+++|.+..+......+++|.+.....+...+..+.+|||||+... ..+...+...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG--DKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSS--SSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCc--cchHHHHHHHHHHHHHh
Confidence 4899999999999999999999886656777788877776667777789999999996432 11233344456667899
Q ss_pred cceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHH
Q 017937 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (363)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~ 275 (363)
+|++++|+|++++......++..+++. .+.|+++|+||+|+...... ...+.. .+..+++++||++|.|+++++
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~---~~~~~~-~~~~~~~~~Sa~~~~gv~~l~ 153 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVDDPKHELY---LGPLYG-LGFGDPIPTSSEHARGLEELL 153 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGGGGG---CGGGGG-GSSCSCEECBTTTTBSHHHHH
T ss_pred CCEEEEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcccccchHh---HHHHHh-CCCCCeEEEecccCCChHHHH
Confidence 999999999998877766677766655 57999999999999754221 112222 234478999999999999999
Q ss_pred HHHHhhCC
Q 017937 276 DWILTKLP 283 (363)
Q Consensus 276 ~~i~~~l~ 283 (363)
++|.+.++
T Consensus 154 ~~l~~~l~ 161 (161)
T 2dyk_A 154 EAIWERLP 161 (161)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhCc
Confidence 99998764
No 7
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=2.1e-25 Score=216.88 Aligned_cols=208 Identities=25% Similarity=0.264 Sum_probs=117.3
Q ss_pred ccccccccccCc-CCCcCCccccccccCCcCcCCCC-CCchhhhhcccCCCCCCCCcEEEEEcCCCCChHHHHHHHhccc
Q 017937 62 SNQREMDLDDGD-EMEFDDASSFLSLSEKPDRNMAS-PDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 62 ~~~~e~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.+.+|+.+||.| +.+..+...+...+..+...+.. .......... ....+|+++|.+|||||||+|+|++.+
T Consensus 184 ~a~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~------r~~~kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 184 CALIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIV------SEGVSTVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp HHTTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHCEEEEEECCTTSSHHHHHHHCC---
T ss_pred HHHhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhh------cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788899965 44444444444333222211110 1111111111 033479999999999999999999988
Q ss_pred cceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCch----HHHH
Q 017937 140 LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER----IDEI 215 (363)
Q Consensus 140 ~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~----~~~~ 215 (363)
...++..+++|++.....+..++..+.+|||||+.+ ....+...+......++..+|++++|+|++++... ....
T Consensus 258 ~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~-~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~ 336 (476)
T 3gee_A 258 RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE-AGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRE 336 (476)
T ss_dssp ---------------CEEEEETTEEEEEEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHH
T ss_pred CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc-chhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHH
Confidence 777899999999998888888889999999999743 22333444455667788999999999999987643 2222
Q ss_pred HHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 216 LEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 216 ~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
+...+ .+.|+++|+||+|+........ ..+... +..+++++||++|.|+++|+++|.+.+.
T Consensus 337 ~l~~l----~~~piIvV~NK~Dl~~~~~~~~--~~l~~~-~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 337 LKAAH----PAAKFLTVANKLDRAANADALI--RAIADG-TGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHC----TTSEEEEEEECTTSCTTTHHHH--HHHHHH-HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred HHHhc----CCCCEEEEEECcCCCCccchhH--HHHHhc-CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 33333 3689999999999987655432 222222 1257999999999999999999999886
No 8
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=2.4e-26 Score=223.81 Aligned_cols=226 Identities=25% Similarity=0.333 Sum_probs=149.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 112 ~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
.++.++|+++|.+|||||||+|+|++..+..+.+.+++|++.......+.+..+.+|||||+. .....+...+...+..
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~-~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGID-IGDEPFLAQIRQQAEI 98 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC-------CCHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCC-CcchHHHHHHHHHHHh
Confidence 345679999999999999999999999988889999999999998888889999999999975 2223345556667778
Q ss_pred hccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
++..+|++|||+|+..+....+.++.+.++. .++|+++|+||+|+..... ...+.+. .+...++++||++|.|+
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~--~~~e~~~--lg~~~~~~iSA~~g~gv 172 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA--NIYDFYS--LGFGEPYPISGTHGLGL 172 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC-----------CCSGG--GSSSSEEECCTTTCTTH
T ss_pred hHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchhhhh--hHHHHHH--cCCCceEEeecccccch
Confidence 8899999999999999888888888888877 7899999999999874321 1111111 23446789999999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec------CC-CeeEEEEEE
Q 017937 272 EDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PT-AKDFIQVEI 344 (363)
Q Consensus 272 ~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~------~~-~~~~i~~~i 344 (363)
.+|++++.+.++....... ..... ++...+++++|||+++|.+.+... ++ +.+.+. .
T Consensus 173 ~~L~~~i~~~l~~~~~~~~----~~~~~----------ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~--~ 236 (456)
T 4dcu_A 173 GDLLDAVAEHFKNIPETKY----NEEVI----------QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVD--T 236 (456)
T ss_dssp HHHHHHHHTTGGGSCSSCC----CTTCE----------EEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTS--E
T ss_pred HHHHHHHHhhccccccccc----ccccc----------eeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEE--E
Confidence 9999999988764321110 11111 344567899999998887653321 22 222222 2
Q ss_pred EEeeCCceeEEecCCC
Q 017937 345 VVEKNSQKIILIGKVS 360 (363)
Q Consensus 345 ~~~~~~q~~ivig~~G 360 (363)
.++.+++...++|++|
T Consensus 237 ~~~~~~~~~~l~DT~G 252 (456)
T 4dcu_A 237 SFTYNQQEFVIVDTAG 252 (456)
T ss_dssp EEEETTEEEEETTGGG
T ss_pred EEEECCceEEEEECCC
Confidence 3456778999999999
No 9
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=2.4e-24 Score=189.39 Aligned_cols=170 Identities=22% Similarity=0.218 Sum_probs=124.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccc-cceecCCCCceEEEEEEEEe-CCCeeEEEEeCCCCchhhh-hhHHH---HHHH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKI-HMLDS---MMMK 187 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~-~~~~~~~~~~t~~~~~~~~~-~~~~~i~l~DtpG~~~~~~-~~~~~---~~~~ 187 (363)
..++|+++|.+|||||||+|+|++.. ...++..+++|......... ..+..+.+|||||+..... ..... .+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 45699999999999999999999987 45677888888876655555 6678999999999743210 00011 1222
Q ss_pred HHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHH----HHHHhc-----CCCC
Q 017937 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL----EWYEKF-----TDVD 258 (363)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~----~~~~~~-----~~~~ 258 (363)
.+......+|++++|+|++++.......+...+.. .+.|+++|+||+|+.......... ..+... ....
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKL 185 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCE
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCC
Confidence 23333455899999999998877766677776665 679999999999998766543322 233332 3456
Q ss_pred cEEEcccCCCCCHHHHHHHHHhhCCCC
Q 017937 259 EVIPVSAKYGHGVEDIRDWILTKLPLG 285 (363)
Q Consensus 259 ~i~~vSAk~g~gi~eL~~~i~~~l~~~ 285 (363)
+++++||++|.|+++++++|.+.++..
T Consensus 186 ~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 186 TVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred eEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 899999999999999999999998753
No 10
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.92 E-value=8.1e-25 Score=191.77 Aligned_cols=162 Identities=20% Similarity=0.221 Sum_probs=109.9
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEE--EEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHH
Q 017937 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH--RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (363)
Q Consensus 112 ~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 189 (363)
+.+..||+++|.+|||||||+++|+...|.. ...+....+ ..........+.+.+|||+| ++.+..+..
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~-~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaG--qe~~~~l~~------ 80 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTIRLQLWDTAG--LERFRSLIP------ 80 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEECSSCEEEEEEECCSC--TTTCGGGHH------
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCC-CcCCccceEEEEEEEEecceEEEEEEEECCC--chhhhhHHH------
Confidence 3466799999999999999999999887752 222222222 22333445557889999999 566665543
Q ss_pred HhhccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccC
Q 017937 190 RSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAK 266 (363)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk 266 (363)
.+++.++++++|+|.++.. .....|+.........+.|++||+||+|+...+.+. +....+....+ .++++|||+
T Consensus 81 -~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~-~~~~e~SAk 158 (216)
T 4dkx_A 81 -SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN-VMFIETSAK 158 (216)
T ss_dssp -HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEEEBTT
T ss_pred -HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC-CeeEEEeCC
Confidence 3478999999999998753 555666665544444679999999999997543321 11222222233 379999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 017937 267 YGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (363)
+|.||+++|+.|++.+..
T Consensus 159 tg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 159 AGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp TTBSHHHHHHHHHHHC--
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 999999999999998865
No 11
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.91 E-value=4.1e-25 Score=203.28 Aligned_cols=205 Identities=19% Similarity=0.247 Sum_probs=140.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccc-----eecCCCC----------------------ceEEE------------
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS-----IVTNKPQ----------------------TTRHR------------ 153 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~-----~~~~~~~----------------------~t~~~------------ 153 (363)
...++|+++|.+|||||||+|+|++..+. .++..|+ +|++.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999999998874 3344443 22210
Q ss_pred ------------EEEEEeCCCeeEEEEeCCCCchhh----hhhHHHHHHHHHHhhccccceEE-EEeeCCCCCchHHH-H
Q 017937 154 ------------ILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIV-VLVDACKAPERIDE-I 215 (363)
Q Consensus 154 ------------~~~~~~~~~~~i~l~DtpG~~~~~----~~~~~~~~~~~~~~~~~~ad~ii-~VvD~~~~~~~~~~-~ 215 (363)
...........+.+|||||+.... .......+...+..++..++.++ +|+|++++...... .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 001111124789999999975321 12222334455666777888666 79999876644432 3
Q ss_pred HHHhccccCCCCCEEEEEcCCCCCChhH-HHHHHHH-HHhc-CCCCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCC
Q 017937 216 LEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEW-YEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292 (363)
Q Consensus 216 ~~~~~~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~-~~~~-~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~ 292 (363)
+...+.. .+.|+++|+||+|+..... ..+.... .... .++.+++++||++|.|+++++++|.+ ++++.|+.+
T Consensus 184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~---~~~~~~~~~ 258 (299)
T 2aka_B 184 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA---ERKFFLSHP 258 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH---HHHHHHHCT
T ss_pred HHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH---HHHHHhcCC
Confidence 4454444 5789999999999986533 2221111 0000 12347899999999999999999987 456667777
Q ss_pred CCCCchHH---HHHHHHHHHHHHhhccCCCCCc
Q 017937 293 IVSEHPER---FFVGEIIREKIFMQYRNEVPYA 322 (363)
Q Consensus 293 ~~~~~~~~---~~~~eiire~i~~~~~~evp~s 322 (363)
.+++.+.+ ..+.+++|++++.++++++||.
T Consensus 259 ~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~ 291 (299)
T 2aka_B 259 SYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGL 291 (299)
T ss_dssp TTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhCHHHHHHHHHHHHHHHHHHHhHHH
Confidence 77777777 8899999999999999999985
No 12
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=2.9e-23 Score=177.50 Aligned_cols=164 Identities=16% Similarity=0.195 Sum_probs=111.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|||||||+|+|.+..+....++.+.+.. .+..++..+.+|||||+ ..+..+ +..++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~ 81 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQ--ESLRSS-------WNTYY 81 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE----EEEETTEEEEEEECCC------CGG-------GHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceE----EEEECCEEEEEEECCCC--HhHHHH-------HHHHh
Confidence 556999999999999999999998776544444443322 22335689999999995 333333 23447
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSAk~ 267 (363)
..+|++++|+|++++. .....++....... ..+.|+++|+||+|+.......+....+.. .....+++++||++
T Consensus 82 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 161 (187)
T 1zj6_A 82 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALT 161 (187)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCC
Confidence 8999999999998763 44555665555431 257999999999999764333333333321 11234799999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCCCC
Q 017937 268 GHGVEDIRDWILTKLPLGPAYYP 290 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~~~~~~~ 290 (363)
|.|+++++++|.+.+...++..|
T Consensus 162 g~gi~~l~~~l~~~~~~~~~~~~ 184 (187)
T 1zj6_A 162 GEGLCQGLEWMMSRLKIRLEHHH 184 (187)
T ss_dssp TBTHHHHHHHHHHHHCC------
T ss_pred CcCHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999987665444
No 13
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.91 E-value=2.7e-23 Score=178.24 Aligned_cols=167 Identities=29% Similarity=0.372 Sum_probs=118.8
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh----hhHHHHHHHH
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKN 188 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~----~~~~~~~~~~ 188 (363)
...++|+++|.+|||||||+|+|++..+......+++|........ +.++.+|||||+..... ......+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE---CCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 3556999999999999999999999887767778887776554333 35688999999632111 1111112222
Q ss_pred HHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHH---HHhcCCCCcEEEccc
Q 017937 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW---YEKFTDVDEVIPVSA 265 (363)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~---~~~~~~~~~i~~vSA 265 (363)
+......+|++++|+|++.+.......+..++.. .+.|+++|+||+|+.+........+. .....+..+++++||
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSS 175 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCT
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEec
Confidence 3333456699999999988776666666666655 57999999999999876544333222 223334468999999
Q ss_pred CCCCCHHHHHHHHHhhCCC
Q 017937 266 KYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l~~ 284 (363)
++|.|+++++++|.+.+.+
T Consensus 176 ~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 176 VTGEGISELLDLISTLLKE 194 (195)
T ss_dssp TTCTTHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHhhc
Confidence 9999999999999988753
No 14
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.91 E-value=9.7e-25 Score=211.43 Aligned_cols=210 Identities=25% Similarity=0.302 Sum_probs=136.6
Q ss_pred ccccccccccCcCCCcCCccccccccCCcCcCC-CCCCchhhhhcccCCCCCCCCcEEEEEcCCCCChHHHHHHHhcccc
Q 017937 62 SNQREMDLDDGDEMEFDDASSFLSLSEKPDRNM-ASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKL 140 (363)
Q Consensus 62 ~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKSSLln~l~~~~~ 140 (363)
.+.+|+.+||.|+.++.....+...+..+...+ ............ ....+|+++|.+|||||||+|+|++.++
T Consensus 176 ~a~iEa~iDf~ed~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~------r~~~kV~ivG~~nvGKSSLln~L~~~~~ 249 (462)
T 3geh_A 176 LAEIEARIDFEEDLPPLDDEAIISDIENIAAEISQLLATKDKGELL------RTGLKVAIVGRPNVGKSSLLNAWSQSDR 249 (462)
T ss_dssp HHHHHHHTTSSSSSCCCCTTTHHHHHHHHHHHHHHHTTTHHHHHHH------HHCEEEEEEECTTSSHHHHHHHHHHHHB
T ss_pred HHHHHhhccccccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh------cCCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 456788889987666655554443222221111 011111111111 0234899999999999999999999888
Q ss_pred ceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhc
Q 017937 141 SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGV 220 (363)
Q Consensus 141 ~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~ 220 (363)
..++..+++|++.....+..++..+.+|||||+.+ ....+..........++..+|++++|+|++++.......+...+
T Consensus 250 a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~-~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l 328 (462)
T 3geh_A 250 AIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE-TSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV 328 (462)
T ss_dssp SCCSCCTTCCHHHHHHEEEETTEEEEECC---------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHH
T ss_pred ccccCCCCeeEEEEEEEEEECCEEEEEEECCcccc-chhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhc
Confidence 77888999998876666667789999999999743 22334444456667788999999999999988776666665555
Q ss_pred cccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhCCCCC
Q 017937 221 GDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (363)
Q Consensus 221 ~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~ 286 (363)
. ..|+++|+||+|+....... .........+++++||++|.|+++|+++|.+.+....
T Consensus 329 ~----~~piivV~NK~Dl~~~~~~~----~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 329 K----HRPLILVMNKIDLVEKQLIT----SLEYPENITQIVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp T----TSCEEEEEECTTSSCGGGST----TCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred c----CCcEEEEEECCCCCcchhhH----HHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 3 37999999999998765432 1112223457999999999999999999999887654
No 15
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.91 E-value=2.5e-23 Score=183.95 Aligned_cols=171 Identities=18% Similarity=0.190 Sum_probs=112.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
.+.++|+++|.+|||||||+|+|++..+. +...+++|+..........+..+.+|||||+...............+..+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 105 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL 105 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence 45679999999999999999999998876 56677788877776666677899999999974321111111111223334
Q ss_pred ccccceEEEEeeCCCCCc---hHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH----HHHHHHHhcC-CCCcEEEcc
Q 017937 193 GINADCIVVLVDACKAPE---RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA----KKLEWYEKFT-DVDEVIPVS 264 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~---~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~----~~~~~~~~~~-~~~~i~~vS 264 (363)
+..+|++|+|+|++++.. .....+...+.....+.|+++|+||+|+.....+. .....+.... ...++++||
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 185 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFS 185 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECC
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 678899999999987642 11122333333322479999999999997643321 1222332222 225899999
Q ss_pred cCCCCCHHHHHHHHHhhCCC
Q 017937 265 AKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 265 Ak~g~gi~eL~~~i~~~l~~ 284 (363)
|++|.|+++++++|.+.+..
T Consensus 186 A~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 186 TLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHH
Confidence 99999999999999988753
No 16
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.91 E-value=4.5e-24 Score=180.45 Aligned_cols=162 Identities=26% Similarity=0.345 Sum_probs=115.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
..+|+++|.+|||||||+|+|.+..+..++..+++|++.....+..++..+.+|||||+... ...+..........+++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA-SDEVERIGIERAWQEIE 82 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCC-SSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccc-hhHHHHHHHHHHHHHHH
Confidence 34899999999999999999999876666788888887777777777788999999997431 12222222333445678
Q ss_pred ccceEEEEeeCCCCCch-HHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHH
Q 017937 195 NADCIVVLVDACKAPER-IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~~~-~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~e 273 (363)
.+|++++|+|+++.... ...++.........++|+++|+||+|+..... . +... ...+++++||++|.|+++
T Consensus 83 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~-~~~~-~~~~~~~~SA~~g~gv~~ 155 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-----G-MSEV-NGHALIRLSARTGEGVDV 155 (172)
T ss_dssp TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----E-EEEE-TTEEEEECCTTTCTTHHH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-----h-hhhc-cCCceEEEeCCCCCCHHH
Confidence 99999999999876532 22333222222224799999999999853210 0 1111 234799999999999999
Q ss_pred HHHHHHhhCCC
Q 017937 274 IRDWILTKLPL 284 (363)
Q Consensus 274 L~~~i~~~l~~ 284 (363)
++++|.+.+..
T Consensus 156 l~~~l~~~~~~ 166 (172)
T 2gj8_A 156 LRNHLKQSMGF 166 (172)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHhhh
Confidence 99999998854
No 17
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.91 E-value=2.4e-23 Score=178.99 Aligned_cols=166 Identities=23% Similarity=0.267 Sum_probs=108.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccc-cceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh-hHHHHHHHHHH
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSMMMKNVR 190 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~-~~~~~~~~~~~ 190 (363)
.+.++|+++|.+|||||||+|+|++.. ...+...+++|........ +..+.+|||||+...... .....+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 356799999999999999999999987 3445666777766544333 237999999996432110 00111222223
Q ss_pred hhc---cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcc
Q 017937 191 SAG---INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVS 264 (363)
Q Consensus 191 ~~~---~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vS 264 (363)
.++ ..+|++++|+|++++.......+..++.. .+.|+++|+||+|+.....+......+.. .....+++++|
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS 175 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEE
Confidence 333 34499999999998776665555566555 67999999999999877655443333322 12345899999
Q ss_pred cCCCCCHHHHHHHHHhhCC
Q 017937 265 AKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 265 Ak~g~gi~eL~~~i~~~l~ 283 (363)
|++|.|+++++++|.+.++
T Consensus 176 a~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 176 SETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHHHhc
Confidence 9999999999999988764
No 18
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.3e-23 Score=180.59 Aligned_cols=163 Identities=18% Similarity=0.232 Sum_probs=113.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccc-eecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
+..+|+++|.+|||||||+|+|++..+. ......+.+.......+......+.+|||||. ..+..+ +..+
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 92 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ--ERFHSL-------APMY 92 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCS--GGGGGG-------THHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCc--hhhHhh-------hHHh
Confidence 4569999999999999999999988753 23455555555554555556788999999994 333333 2334
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCcEEEcccCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
+..+|++++|+|++++. .....|+.........+.|+++|+||+|+...+. ..+..... ...+ .+++++||++|
T Consensus 93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-~~~~-~~~~~~Sa~~~ 170 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYA-ESIG-AIVVETSAKNA 170 (192)
T ss_dssp HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-HTTT-CEEEECBTTTT
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHH-HHcC-CEEEEEeCCCC
Confidence 78999999999998764 2333344333322225789999999999964322 22222333 3333 48999999999
Q ss_pred CCHHHHHHHHHhhCCCCCC
Q 017937 269 HGVEDIRDWILTKLPLGPA 287 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~ 287 (363)
.|+++++++|.+.+...++
T Consensus 171 ~gi~~l~~~l~~~i~~~~~ 189 (192)
T 2fg5_A 171 INIEELFQGISRQIPPLDP 189 (192)
T ss_dssp BSHHHHHHHHHHTCC----
T ss_pred cCHHHHHHHHHHHHHhhCC
Confidence 9999999999999876543
No 19
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.90 E-value=8.2e-24 Score=178.32 Aligned_cols=161 Identities=22% Similarity=0.221 Sum_probs=103.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|||||||+|+|.+..+......++++.......+......+.+|||||.....+..+ ...++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------~~~~~ 75 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWS-------QESCL 75 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHH-------HHHTT
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhh-------HHhhc
Confidence 34689999999999999999999988776666666665444444444456899999999533112222 23457
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHH--HHHHHHHHhcCCCCcEEEcccCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
+.+|++++|+|++++. .....|+....... ..+.|+++|+||+|+...+.+ .+....... .+ .+++++||++|
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~g 153 (175)
T 2nzj_A 76 QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVV-FD-CKFIETSATLQ 153 (175)
T ss_dssp TSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH-HT-SEEEECBTTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHH-cC-CeEEEEecCCC
Confidence 8899999999998753 23334443333221 247999999999999754322 222222222 22 48999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 017937 269 HGVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (363)
.|+++++++|.+.+.
T Consensus 154 ~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 154 HNVAELFEGVVRQLR 168 (175)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988763
No 20
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.90 E-value=2.1e-23 Score=180.46 Aligned_cols=156 Identities=21% Similarity=0.216 Sum_probs=105.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|++|||||||+++|.+..+....++.+.+. ..+..++..+.+|||||+ ..+..+ +..++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~----~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 90 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS----EELTIAGMTFTTFDLGGH--IQARRV-------WKNYL 90 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC----EEEEETTEEEEEEEECC------CCG-------GGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee----EEEEECCEEEEEEECCCc--HhhHHH-------HHHHH
Confidence 55699999999999999999999887654444444432 334445689999999994 333322 33457
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHhc---------------C
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---------------T 255 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---------------~ 255 (363)
+.+|++++|+|++++. .....++...++.. ..+.|+++|+||+|+.......+..+.+... .
T Consensus 91 ~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
T 1f6b_A 91 PAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNA 170 (198)
T ss_dssp GGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccC
Confidence 8999999999998764 34455555554431 2579999999999997532233333333211 1
Q ss_pred CCCcEEEcccCCCCCHHHHHHHHHhhC
Q 017937 256 DVDEVIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 256 ~~~~i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
...++++|||++|.|+++++++|.+.+
T Consensus 171 ~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 171 RPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 335799999999999999999998765
No 21
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.90 E-value=1e-23 Score=189.66 Aligned_cols=166 Identities=23% Similarity=0.309 Sum_probs=119.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh----hHHHHHHHHHHh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH----MLDSMMMKNVRS 191 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~----~~~~~~~~~~~~ 191 (363)
++|+++|.+|||||||+|+|++.... ++..+++|.+.....+...+..+.+|||||+...... ...+.+ ...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~-v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i---~~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQI---AAQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEE-EEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHH---HHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC-ccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHH---HHH
Confidence 48999999999999999999998754 7888999998888888888889999999997543221 222222 223
Q ss_pred hc--cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 192 AG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 192 ~~--~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
++ ..+|++++|+|+++.. . ...+...+.. .+.|+++|+||+|+............+....+ .+++++||++|.
T Consensus 78 ~~~~~~~d~vi~VvDas~~~-~-~~~l~~~l~~--~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~vi~~SA~~g~ 152 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACHLE-R-HLYLTSQLFE--LGKPVVVALNMMDIAEHRGISIDTEKLESLLG-CSVIPIQAHKNI 152 (256)
T ss_dssp HHHHSCCSEEEEEEEGGGHH-H-HHHHHHHHTT--SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC-SCEEECBGGGTB
T ss_pred HHhhCCCCEEEEEeeCCCch-h-HHHHHHHHHH--cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC-CCEEEEECCCCC
Confidence 34 7899999999998732 2 2233344444 57999999999998644322111222322233 489999999999
Q ss_pred CHHHHHHHHHhhCCCCCCCCCC
Q 017937 270 GVEDIRDWILTKLPLGPAYYPK 291 (363)
Q Consensus 270 gi~eL~~~i~~~l~~~~~~~~~ 291 (363)
|+++|+++|.+. ......|+.
T Consensus 153 gi~el~~~i~~~-~~~~~~y~~ 173 (256)
T 3iby_A 153 GIPALQQSLLHC-SQKIKPLKL 173 (256)
T ss_dssp SHHHHHHHHHTC-CSCCCCCCC
T ss_pred CHHHHHHHHHhh-hcCcccCCH
Confidence 999999999998 433324443
No 22
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.90 E-value=1.2e-22 Score=173.04 Aligned_cols=158 Identities=23% Similarity=0.335 Sum_probs=111.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|||||||+++|.+..+....++.+.+.. .+...+..+.+|||||. ..+. ..+..++
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~----~~~~~~~~l~i~Dt~G~--~~~~-------~~~~~~~ 81 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGGQ--RKIR-------PYWRSYF 81 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEE----EEEETTEEEEEEECSSC--GGGH-------HHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEE----EEEECCEEEEEEECCCC--HHHH-------HHHHHHh
Confidence 456999999999999999999999876555555554322 23334789999999995 3332 2244557
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSAk~ 267 (363)
..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....+.. .....++++|||++
T Consensus 82 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (181)
T 1fzq_A 82 ENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALT 161 (181)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred CCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCC
Confidence 8999999999998754 33445555554432 257899999999999865443333333221 11234799999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 017937 268 GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (363)
|.|+++++++|.+.+..
T Consensus 162 g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 162 GEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CTTHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998754
No 23
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.90 E-value=1.4e-23 Score=175.41 Aligned_cols=156 Identities=24% Similarity=0.275 Sum_probs=96.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
.+|+++|.+|||||||+|+|.+.........++++... ...+......+.+|||||. ..+..+ ...++..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~--~~~~~~-------~~~~~~~ 72 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR-SIVVDGEEASLMVYDIWEQ--DGGRWL-------PGHCMAM 72 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEEE-EEEETTEEEEEEEEECC------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE-EEEECCEEEEEEEEECCCC--ccchhh-------hhhhhhh
Confidence 48999999999999999999988876666677777643 2344555678999999994 333322 3345789
Q ss_pred cceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCCCCH
Q 017937 196 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGV 271 (363)
Q Consensus 196 ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g~gi 271 (363)
+|++++|+|++++. .....++....... ..+.|+++|+||+|+.+...+. +....+....+ .+++++||++|.|+
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 151 (166)
T 3q72_A 73 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD-CKFIETSAALHHNV 151 (166)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTT-CEEEECBGGGTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhC-CcEEEeccCCCCCH
Confidence 99999999998754 33344444443321 2579999999999997543221 11222333333 48999999999999
Q ss_pred HHHHHHHHhhC
Q 017937 272 EDIRDWILTKL 282 (363)
Q Consensus 272 ~eL~~~i~~~l 282 (363)
++++++|.+.+
T Consensus 152 ~~l~~~l~~~~ 162 (166)
T 3q72_A 152 QALFEGVVRQI 162 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 24
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.90 E-value=2.1e-23 Score=174.64 Aligned_cols=160 Identities=20% Similarity=0.190 Sum_probs=110.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccccee-cCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
+..+|+++|.+|||||||+|+|++..+... ....+.+.......+......+.+|||||. ..+..+ +..+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~-------~~~~ 75 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ--ERYHSL-------APMY 75 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc--HHhhhh-------hHHh
Confidence 445899999999999999999998776432 223333333333344445678999999995 333333 3344
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCcEEEcccCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
+..+|++++|+|++++. .....|+.........+.|+++|+||+|+..... ..+....... .+ .+++++||++|
T Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~g 153 (170)
T 1r2q_A 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD-NS-LLFMETSAKTS 153 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEECCTTTC
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHH-cC-CeEEEEeCCCC
Confidence 78999999999998753 3344454444433335789999999999964322 1222222222 23 48999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 017937 269 HGVEDIRDWILTKLPL 284 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (363)
.|+++++++|.+.+.+
T Consensus 154 ~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 154 MNVNEIFMAIAKKLPK 169 (170)
T ss_dssp TTHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998864
No 25
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.90 E-value=3.9e-23 Score=178.12 Aligned_cols=162 Identities=19% Similarity=0.189 Sum_probs=110.4
Q ss_pred CCCCCCcEEEEEcCCCCChHHHHHHHhcccccee--cCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHH
Q 017937 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK 187 (363)
Q Consensus 110 ~~~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~ 187 (363)
.|....++|+++|.+|||||||+++|++..+..+ ..+.+ .....+...+..+.+|||||+ ..+..+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~--~~~~~~------ 79 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG----YNVETFEKGRVAFTVFDMGGA--KKFRGL------ 79 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS----EEEEEEEETTEEEEEEEECCS--GGGGGG------
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc----eeEEEEEeCCEEEEEEECCCC--HhHHHH------
Confidence 3445667999999999999999999999887643 22223 222334567799999999995 333322
Q ss_pred HHHhhccccceEEEEeeCCCCC--chHHHHHHHhccccC--------CCCCEEEEEcCCCCCChhHHHHHHHHHH---h-
Q 017937 188 NVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK--------DKLPILLVLNKKDLIKPGEIAKKLEWYE---K- 253 (363)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~--------~~~piilV~NK~Dl~~~~~~~~~~~~~~---~- 253 (363)
+..++..+|++|+|+|++++. .....++..++.... .+.|+++|+||+|+.......+....+. .
T Consensus 80 -~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 158 (199)
T 4bas_A 80 -WETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLM 158 (199)
T ss_dssp -GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHH
T ss_pred -HHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhc
Confidence 335588999999999999764 344455655544311 2789999999999986633332222221 0
Q ss_pred cCCCCcEEEcccCCCCCHHHHHHHHHhhCCC
Q 017937 254 FTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 254 ~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
.....++++|||++|.||++++++|.+.+..
T Consensus 159 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 159 GDHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp TTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 1234589999999999999999999987753
No 26
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.90 E-value=4e-23 Score=172.60 Aligned_cols=159 Identities=17% Similarity=0.155 Sum_probs=106.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+|+|.+..+. .....++....... +......+.+|||||.. .+..+ ...
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~--~~~~~-------~~~ 70 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTE--QFTAM-------RDL 70 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSC--SSTTH-------HHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCChH--HHHHH-------HHH
Confidence 3458999999999999999999987664 23333333333332 33445789999999953 33333 233
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
++..+|++++|+|++++. .....++....... ..+.|+++|+||+|+.+.+.+ .+....+....+..+++++||++
T Consensus 71 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (167)
T 1c1y_A 71 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKS 150 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCC
Confidence 467899999999998753 23333433332211 257999999999999754321 11122222323345899999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 017937 268 GHGVEDIRDWILTKLP 283 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (363)
|.|+++++++|.+.+.
T Consensus 151 ~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 151 KINVNEIFYDLVRQIN 166 (167)
T ss_dssp TBSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987653
No 27
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.90 E-value=6.6e-23 Score=176.05 Aligned_cols=156 Identities=21% Similarity=0.195 Sum_probs=109.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|||||||+++|.+..+....++.+.+ ...+..++..+.+|||||+. .+..+ +..++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~~ 88 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT----SEELAIGNIKFTTFDLGGHI--QARRL-------WKDYF 88 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE----EEEEEETTEEEEEEECCCSG--GGTTS-------GGGGC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC----eEEEEECCEEEEEEECCCCH--HHHHH-------HHHHH
Confidence 4559999999999999999999998775443333333 33444556899999999963 33222 33457
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHhc----------CCCCcE
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----------TDVDEV 260 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~----------~~~~~i 260 (363)
+.+|++++|+|++++. .....++...++.. ..+.|+++|+||+|+.......+..+.+... ....++
T Consensus 89 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T 1m2o_B 89 PEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEV 168 (190)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred hcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEE
Confidence 8999999999998764 33445555554321 2579999999999997633333333333221 133579
Q ss_pred EEcccCCCCCHHHHHHHHHhhC
Q 017937 261 IPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 261 ~~vSAk~g~gi~eL~~~i~~~l 282 (363)
++|||++|.|+++++++|.+.+
T Consensus 169 ~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 169 FMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp EECBTTTTBSHHHHHHHHHTTC
T ss_pred EEeECCcCCCHHHHHHHHHhhC
Confidence 9999999999999999998754
No 28
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.90 E-value=6.3e-23 Score=173.94 Aligned_cols=161 Identities=18% Similarity=0.211 Sum_probs=109.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceec-CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
+..+|+++|.+|||||||+|+|++..+.... ...+.+.......+......+.+|||||. ..+..+ +..+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 81 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ--ERYHSL-------APMY 81 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCS--GGGGGG-------THHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCC--hhhhhh-------hHHH
Confidence 4568999999999999999999988765321 22233333333334444578999999995 333333 2334
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCcEEEcccCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
++.+|++++|+|++++. .....++.........+.|+++|+||+|+..... ..+....... .+ .+++++||++|
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~g 159 (181)
T 2efe_B 82 YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE-NG-LFFMETSAKTA 159 (181)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-TT-CEEEECCSSSC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHH-cC-CEEEEEECCCC
Confidence 78999999999998754 3333444444333235789999999999975432 2222222222 33 47999999999
Q ss_pred CCHHHHHHHHHhhCCCC
Q 017937 269 HGVEDIRDWILTKLPLG 285 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~~ 285 (363)
.|+++++++|.+.+...
T Consensus 160 ~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 160 TNVKEIFYEIARRLPRV 176 (181)
T ss_dssp TTHHHHHHHHHHTCC--
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999998753
No 29
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.90 E-value=4.5e-23 Score=175.48 Aligned_cols=159 Identities=16% Similarity=0.220 Sum_probs=110.8
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 017937 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (363)
Q Consensus 111 ~~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 190 (363)
+..+..+|+++|.+|||||||+|+|.+..+.......+.+... +..++..+.+|||||. ..+..+ +.
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~Dt~G~--~~~~~~-------~~ 83 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE----IVINNTRFLMWDIGGQ--ESLRSS-------WN 83 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEE----EEETTEEEEEEEESSS--GGGTCG-------GG
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEE----EEECCEEEEEEECCCC--HhHHHH-------HH
Confidence 3446679999999999999999999998875555555544322 2335689999999995 333222 34
Q ss_pred hhccccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcc
Q 017937 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVS 264 (363)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vS 264 (363)
.++..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....+.. .....+++++|
T Consensus 84 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 163 (181)
T 2h17_A 84 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 163 (181)
T ss_dssp GGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 5578999999999998763 44455565555432 267999999999999764333333333211 11234799999
Q ss_pred cCCCCCHHHHHHHHHhhC
Q 017937 265 AKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 265 Ak~g~gi~eL~~~i~~~l 282 (363)
|++|.|+++++++|.+.+
T Consensus 164 a~~g~gi~~l~~~l~~~l 181 (181)
T 2h17_A 164 ALTGEGLCQGLEWMMSRL 181 (181)
T ss_dssp TTTTBTHHHHHHHHHTC-
T ss_pred CCCCcCHHHHHHHHHhhC
Confidence 999999999999998653
No 30
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.90 E-value=5.6e-23 Score=172.21 Aligned_cols=161 Identities=16% Similarity=0.199 Sum_probs=110.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce-ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
+..+|+++|.+|||||||+|+|.+..+.. .....+.+.......+......+.+|||||+ ..+..+ +..+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~-------~~~~ 75 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL--ERFRAL-------APMY 75 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------THHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCc--hhhhcc-------cHhh
Confidence 44689999999999999999999887532 2334444444444444555678999999996 333333 2334
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
+..+|++++|+|++++. .....|+...........|+++|+||+|+.....+ .+....+....+ .+++++||++|.
T Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 154 (170)
T 1z0j_A 76 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIH-AIFVETSAKNAI 154 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTTTB
T ss_pred CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcC-CEEEEEeCCCCc
Confidence 78999999999998754 22333333333222367899999999999754322 122222333333 489999999999
Q ss_pred CHHHHHHHHHhhCCC
Q 017937 270 GVEDIRDWILTKLPL 284 (363)
Q Consensus 270 gi~eL~~~i~~~l~~ 284 (363)
|+++++++|.+.+..
T Consensus 155 ~i~~l~~~i~~~i~~ 169 (170)
T 1z0j_A 155 NINELFIEISRRIPS 169 (170)
T ss_dssp SHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998753
No 31
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.90 E-value=7.7e-23 Score=170.58 Aligned_cols=155 Identities=18% Similarity=0.172 Sum_probs=108.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
+|+++|.+|||||||+++|.+..+.. ..| |.......+...+..+.+|||||+ ..+.. .+..++..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~-------~~~~~~~~~ 68 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQ--DKIRP-------LWRHYFQNT 68 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC--CCC--CSSCCEEEEECSSCEEEEEECCCC--GGGHH-------HHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc--ccC--cCceeEEEEEECCEEEEEEEcCCC--hhhHH-------HHHHHhccC
Confidence 79999999999999999999877642 222 222223345567789999999995 33322 234558999
Q ss_pred ceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcccCCCCC
Q 017937 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 197 d~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSAk~g~g 270 (363)
|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....... .....+++++||++|.|
T Consensus 69 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 69 QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 148 (164)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence 9999999998763 34445555554421 257899999999999765333333332221 11234799999999999
Q ss_pred HHHHHHHHHhhCCC
Q 017937 271 VEDIRDWILTKLPL 284 (363)
Q Consensus 271 i~eL~~~i~~~l~~ 284 (363)
+++++++|.+.+..
T Consensus 149 i~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 149 LYEGLDWLSNQLRN 162 (164)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988753
No 32
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.89 E-value=1.5e-22 Score=173.36 Aligned_cols=159 Identities=17% Similarity=0.176 Sum_probs=109.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|||||||+|+|++..+.. ...+ + .......+...+..+.+|||||. ..+.. .+..++
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~-t-~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~-------~~~~~~ 88 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNE-DMIP-T-VGFNMRKITKGNVTIKLWDIGGQ--PRFRS-------MWERYC 88 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCC-C-CSEEEEEEEETTEEEEEEEECCS--HHHHT-------THHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCC-ccCC-C-CceeEEEEEeCCEEEEEEECCCC--HhHHH-------HHHHHH
Confidence 45689999999999999999999877642 1112 1 11112234566789999999995 33322 234457
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSAk~ 267 (363)
..+|++++|+|+++.. .....++...+... ..+.|+++|+||+|+.......+....+.. .....++++|||++
T Consensus 89 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 168 (188)
T 1zd9_A 89 RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKE 168 (188)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCC
Confidence 8999999999998753 44445555554432 257999999999999764333333332221 11234789999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 017937 268 GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (363)
|.|+++++++|.+.+..
T Consensus 169 g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 169 KDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CTTHHHHHHHHHHTCC-
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998864
No 33
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.89 E-value=9.1e-23 Score=171.21 Aligned_cols=158 Identities=16% Similarity=0.217 Sum_probs=110.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|||||||+|+|.+..+....+..+ .....+...+..+.+|||||.. .+..+ +..++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~--~~~~~-------~~~~~ 72 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIG----FNVETVTYKNLKFQVWDLGGLT--SIRPY-------WRCYY 72 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSS----EEEEEEEETTEEEEEEEECCCG--GGGGG-------GGGGC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCc----cceEEEEECCEEEEEEECCCCh--hhhHH-------HHHHh
Confidence 45699999999999999999999877643222222 2223344457899999999953 33222 34558
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSAk~ 267 (363)
..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....+.. .....+++++||++
T Consensus 73 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (171)
T 1upt_A 73 SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATK 152 (171)
T ss_dssp TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCC
Confidence 8999999999998763 44555565554432 157999999999999865333333333221 11234799999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 017937 268 GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (363)
|.|+++++++|.+.+..
T Consensus 153 ~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 153 GTGLDEAMEWLVETLKS 169 (171)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999987753
No 34
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=4.4e-23 Score=177.07 Aligned_cols=167 Identities=19% Similarity=0.208 Sum_probs=113.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccccee-cCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
+..+|+++|.+|||||||+|+|++..+... ....+.+.......+......+.+|||||. ..+..+ +..+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 84 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ--ERFRTL-------TPSY 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSS--GGGCCS-------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCc--hhhhhh-------hHHH
Confidence 445999999999999999999998876421 222233333333334445578999999995 333332 3344
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhH-HHHHHHHHHhcCCCCcEEEcccCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
++.+|++|+|+|++++. .....|+..+.... ..+.|+++|+||+|+..... ..+....... .+ .+++++||++|
T Consensus 85 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~ 162 (195)
T 1x3s_A 85 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK-HS-MLFIEASAKTC 162 (195)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH-TT-CEEEECCTTTC
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHH-cC-CEEEEecCCCC
Confidence 78999999999998753 33444444444322 14789999999999954321 1222233222 23 47999999999
Q ss_pred CCHHHHHHHHHhhCCCCCCCCCC
Q 017937 269 HGVEDIRDWILTKLPLGPAYYPK 291 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~~~~~ 291 (363)
.|+++++++|.+.+...++.++.
T Consensus 163 ~gi~~l~~~l~~~~~~~~~~~~~ 185 (195)
T 1x3s_A 163 DGVQCAFEELVEKIIQTPGLWES 185 (195)
T ss_dssp TTHHHHHHHHHHHHHTSGGGTCC
T ss_pred CCHHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999988776655543
No 35
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=3.4e-23 Score=173.37 Aligned_cols=160 Identities=21% Similarity=0.195 Sum_probs=108.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccce-ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
..+|+++|.+|||||||+|+|++..+.. .....+.+.......+......+.+|||||. ..+..+ +..++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~-------~~~~~ 73 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ--ERFASL-------APXYY 73 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------HHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCC--hhhhhh-------hhhhh
Confidence 4589999999999999999999887642 1222333333333334444568999999995 333332 34457
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCCh---hHH-HHHHHHHHhcCCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP---GEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~---~~~-~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
..+|++++|+|++++. .....|+.........+.|+++|+||+|+... ..+ .+....+....+ .+++++||++
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 152 (170)
T 1ek0_A 74 RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-LLFFETSAKT 152 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-CEEEECCTTT
T ss_pred ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 8999999999998753 33334444443332357899999999999643 111 111222222222 3899999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 017937 268 GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (363)
|.|+++++++|.+.+..
T Consensus 153 ~~gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 153 GENVNDVFLGIGEKIPL 169 (170)
T ss_dssp CTTHHHHHHHHHTTSCC
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999988753
No 36
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.89 E-value=9.8e-23 Score=174.66 Aligned_cols=161 Identities=19% Similarity=0.220 Sum_probs=111.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
.+..+|+++|.+|||||||+|+|.+....... ...|.......+..++..+.+|||||. ..+..+ +..+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~ 87 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN--ILPTIGFSIEKFKSSSLSFTVFDMSGQ--GRYRNL-------WEHY 87 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS--CCCCSSEEEEEEECSSCEEEEEEECCS--TTTGGG-------GGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC--cCCccceeEEEEEECCEEEEEEECCCC--HHHHHH-------HHHH
Confidence 35669999999999999999999988732222 222333344455566789999999995 333322 3345
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccC---CCCCEEEEEcCCCCCChhHHHHHHHHHH--hc-CCCCcEEEcc
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYE--KF-TDVDEVIPVS 264 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~---~~~piilV~NK~Dl~~~~~~~~~~~~~~--~~-~~~~~i~~vS 264 (363)
+..+|++++|+|++++. .....++...+.... .+.|+++|+||+|+.......+....+. .. ....+++++|
T Consensus 88 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (190)
T 2h57_A 88 YKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASD 167 (190)
T ss_dssp GGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEcc
Confidence 78999999999998753 444455555544322 4789999999999976533343333332 11 1235799999
Q ss_pred cCCCCCHHHHHHHHHhhCCC
Q 017937 265 AKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 265 Ak~g~gi~eL~~~i~~~l~~ 284 (363)
|++|.|+++++++|.+.+..
T Consensus 168 a~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 168 AIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTTTBTHHHHHHHHHHHC--
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999998753
No 37
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.89 E-value=1.7e-23 Score=175.57 Aligned_cols=160 Identities=29% Similarity=0.348 Sum_probs=104.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc-
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG- 193 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~- 193 (363)
..+|+++|++|||||||+|+|.+..+. ++..+++|.+.....+...+..+.+|||||+.........+.+ ...++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~---~~~~~~ 78 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEII---ARDYII 78 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS-CC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHH---HHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee-ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHH---HHHHHh
Confidence 458999999999999999999987654 4566676766555556666789999999996432211111111 12222
Q ss_pred -cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHH
Q 017937 194 -INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (363)
Q Consensus 194 -~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~ 272 (363)
..+|++++|+|+++. .....++... .. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|++
T Consensus 79 ~~~~~~~i~v~D~~~~-~~~~~~~~~~-~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 79 NEKPDLVVNIVDATAL-ERNLYLTLQL-ME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-VKVVPLSAAKKMGIE 153 (165)
T ss_dssp HHCCSEEEEEEETTCH-HHHHHHHHHH-HH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBGGGTBSHH
T ss_pred cCCCCEEEEEecCCch-hHhHHHHHHH-Hh--cCCCEEEEEEchHhccccChhhHHHHHHHHhC-CCEEEEEcCCCCCHH
Confidence 379999999999863 2333343333 23 47999999999998533211101112222222 479999999999999
Q ss_pred HHHHHHHhhCC
Q 017937 273 DIRDWILTKLP 283 (363)
Q Consensus 273 eL~~~i~~~l~ 283 (363)
++|++|.+.+.
T Consensus 154 ~l~~~l~~~~~ 164 (165)
T 2wji_A 154 ELKKAISIAVK 164 (165)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999998763
No 38
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.89 E-value=7e-23 Score=176.07 Aligned_cols=160 Identities=18% Similarity=0.140 Sum_probs=110.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
...+|+++|.+|||||||+|+|++..+.. ...+..+.......+...+ ..+.+|||||. ..+..+ +..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 84 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRTI-------TSS 84 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGCTT-------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEECCCc--Hhhhhh-------HHH
Confidence 34589999999999999999999887653 3444445444444444333 68999999994 333333 334
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
++..+|++++|+|++++. .....|+.........+.|+++|+||+|+...+.+. .....+....+ .+++++||++|
T Consensus 85 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 163 (196)
T 3tkl_A 85 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-IPFLETSAKNA 163 (196)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CCEEEECTTTC
T ss_pred HHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CcEEEEeCCCC
Confidence 478999999999998753 333444443333223578999999999997553221 12223333333 48999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 017937 269 HGVEDIRDWILTKLPL 284 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (363)
.|+++++++|.+.+..
T Consensus 164 ~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 164 TNVEQSFMTMAAEIKK 179 (196)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987753
No 39
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.89 E-value=3.8e-23 Score=186.17 Aligned_cols=163 Identities=23% Similarity=0.272 Sum_probs=116.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|||||||+|+|++..+. +...+++|.......+...+..+.+|||||+.........+.+...+.. .
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~-~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL-K 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH-H
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh-h
Confidence 4568999999999999999999998865 6788999998888888877899999999997543222222222222211 1
Q ss_pred cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHH
Q 017937 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~e 273 (363)
..+|++++|+|+++.. ....++... .. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|+++
T Consensus 82 ~~~d~ii~V~D~t~~~-~~~~~~~~l-~~--~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg-~~vi~~SA~~g~gi~e 156 (258)
T 3a1s_A 82 GDADLVILVADSVNPE-QSLYLLLEI-LE--MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG-IPVVFTSSVTGEGLEE 156 (258)
T ss_dssp SCCSEEEEEEETTSCH-HHHHHHHHH-HT--TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC-SCEEECCTTTCTTHHH
T ss_pred cCCCEEEEEeCCCchh-hHHHHHHHH-Hh--cCCCEEEEEECcCCCCccchHHHHHHHHHHcC-CCEEEEEeeCCcCHHH
Confidence 6899999999998753 233333333 33 57999999999998543221111122222223 4899999999999999
Q ss_pred HHHHHHhhCC
Q 017937 274 IRDWILTKLP 283 (363)
Q Consensus 274 L~~~i~~~l~ 283 (363)
++++|.+.+.
T Consensus 157 l~~~i~~~~~ 166 (258)
T 3a1s_A 157 LKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 40
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.89 E-value=8.4e-23 Score=172.53 Aligned_cols=160 Identities=17% Similarity=0.167 Sum_probs=106.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.......+. .....+.+|||||. ..+. ..+..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~-------~~~~~ 75 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ--ERFR-------SLRTP 75 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEETTEEEEEEEEECCCC--GGGH-------HHHGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEeCCCc--hhhh-------hhHHH
Confidence 45689999999999999999999877642 2233333333333333 33368999999995 3322 22445
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhcccc----CCCCCEEEEEcCCCCCChhH-HHHHHHHHHhcCCCCcEEEcc
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVS 264 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~----~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vS 264 (363)
++..+|++++|+|++++. .....|+....... ..+.|+++|+||+|+..... ..+..... ......+++++|
T Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~S 154 (177)
T 1wms_A 76 FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWC-RDNGDYPYFETS 154 (177)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHH-HHTTCCCEEECC
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHH-HhcCCceEEEEe
Confidence 688999999999998754 22333333332211 15689999999999973221 22222222 223345899999
Q ss_pred cCCCCCHHHHHHHHHhhCCC
Q 017937 265 AKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 265 Ak~g~gi~eL~~~i~~~l~~ 284 (363)
|++|.|+++++++|.+.+..
T Consensus 155 a~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 155 AKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999987653
No 41
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.89 E-value=3.1e-24 Score=193.59 Aligned_cols=185 Identities=14% Similarity=0.109 Sum_probs=123.8
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCC-ceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHHHHHHHH
Q 017937 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKN 188 (363)
Q Consensus 112 ~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~--~~~~~~~~~~ 188 (363)
..+..+|+|+|++|||||||+|+|++.........+. +|+......+...+.++.+|||||+.+... ......+.+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 3356799999999999999999999988554444454 677777777777889999999999754221 1111223445
Q ss_pred HHhhccccceEEEEeeCCCCCchHHHHHHHhccccC---CCCCEEEEEc-CCCCCChhHHHH---------HHHHHHhcC
Q 017937 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK---DKLPILLVLN-KKDLIKPGEIAK---------KLEWYEKFT 255 (363)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~---~~~piilV~N-K~Dl~~~~~~~~---------~~~~~~~~~ 255 (363)
+..+++.+|++|+|+|+++ ......++...+.... ...|.++|+| |+|+.... +.. .........
T Consensus 99 ~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~ 176 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACG 176 (260)
T ss_dssp HHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTT
T ss_pred HHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhC
Confidence 5567899999999999986 5444444444333210 1456666666 99997532 222 111222222
Q ss_pred C----CCcEEEcccCCCCCHHHHHHHHHhhCCCCC-CCCCCCCCCCchH
Q 017937 256 D----VDEVIPVSAKYGHGVEDIRDWILTKLPLGP-AYYPKDIVSEHPE 299 (363)
Q Consensus 256 ~----~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~-~~~~~~~~~~~~~ 299 (363)
. +.+ +++||++|.|+++++++|.+.+...+ +.|+.+..++.+.
T Consensus 177 ~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 224 (260)
T 2xtp_A 177 GRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQR 224 (260)
T ss_dssp TCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC--
T ss_pred CeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH
Confidence 1 222 78999999999999999999998766 6777666555554
No 42
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.89 E-value=6.9e-23 Score=176.13 Aligned_cols=160 Identities=18% Similarity=0.202 Sum_probs=103.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 190 (363)
.+..+|+++|.+|||||||+|+|++..+.. ...+..+.+.....+ ......+.+|||||. ..+..+ +.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~ 93 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCE-ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ--ERFNSI-------TS 93 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCS--GGGHHH-------HH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-CCCCccceeEEEEEEEECCeEEEEEEEeCCCc--HHHHHH-------HH
Confidence 345689999999999999999999887653 223333333333333 333468999999995 333322 34
Q ss_pred hhccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCC
Q 017937 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
.++..+|++|+|+|++++. .....|+.........+.|+++|+||+|+...+.+ .+....+.......+++++||++
T Consensus 94 ~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~ 173 (192)
T 2il1_A 94 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKD 173 (192)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCC
Confidence 4578899999999998754 22333333222222257999999999999754322 11223333333345899999999
Q ss_pred CCCHHHHHHHHHhhC
Q 017937 268 GHGVEDIRDWILTKL 282 (363)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (363)
|.|+++++++|.+.+
T Consensus 174 g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 174 NFNVDEIFLKLVDDI 188 (192)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 43
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.89 E-value=1.6e-22 Score=173.95 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=108.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|||||||+++|++..+....+ |.......+...+..+.+|||||. ..+..+ +..++
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~ 94 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNICFTVWDVGGQ--DKIRPL-------WRHYF 94 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEEEE----ETTEEEEEEEETTEEEEEEECC-------CTT-------HHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccccCC----cCceeEEEEEECCEEEEEEECCCC--HhHHHH-------HHHHh
Confidence 55699999999999999999999877653222 222233345557789999999995 333322 33447
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSAk~ 267 (363)
..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....+.. .....++++|||++
T Consensus 95 ~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~ 174 (192)
T 2b6h_A 95 QNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQ 174 (192)
T ss_dssp HTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCC
Confidence 8999999999998763 44445555554421 247999999999999765333333332221 11234789999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 017937 268 GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (363)
|.|+++++++|.+.+..
T Consensus 175 g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 175 GTGLYDGLDWLSHELSK 191 (192)
T ss_dssp TBTHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 99999999999988753
No 44
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=4.4e-23 Score=174.76 Aligned_cols=160 Identities=18% Similarity=0.140 Sum_probs=106.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+|+|++..+......+.++.......+ ......+.+|||||. ..+. ..+..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~-------~~~~~ 79 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ--ERFR-------SVTHA 79 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------C
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc--HHHH-------HHHHH
Confidence 456999999999999999999999887533334444444333332 333468999999994 3222 23456
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCcEEEcccCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
++..+|++++|+|++++. .....|+.........+.|+++|+||+|+..... .......... .+ .+++++||++
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~ 157 (180)
T 2g6b_A 80 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKE-YG-LPFMETSAKT 157 (180)
T ss_dssp CGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHH-HT-CCEEECCTTT
T ss_pred HccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHH-cC-CeEEEEeCCC
Confidence 688999999999998753 2333444333332225789999999999975332 1122222222 23 3799999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 017937 268 GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (363)
|.|+++++++|.+.+..
T Consensus 158 ~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 158 GLNVDLAFTAIAKELKR 174 (180)
T ss_dssp CTTHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999987754
No 45
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.89 E-value=6.4e-24 Score=186.65 Aligned_cols=164 Identities=20% Similarity=0.240 Sum_probs=116.9
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcccc-ceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
.+..+|+++|.+|||||||+|+|+...+ .......+++..............+.+|||||. ..+..+.. .
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~-------~ 83 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ--EKFGGLRD-------G 83 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSG--GGTSCCCH-------H
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCh--HHHhHHHH-------H
Confidence 3556999999999999999999665443 345677788887777777777789999999994 44433322 3
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
++..+|++++|+|++++. .....|+...... ..+.|+++|+||+|+.+.....+....... .+ .+++++||++|.
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~ 160 (221)
T 3gj0_A 84 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKAKSIVFHRK-KN-LQYYDISAKSNY 160 (221)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-STTCCEEEEEECTTSSSCSSCGGGCCHHHH-HT-CEEEECBGGGTB
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCccccccccHHHHHHHHH-cC-CEEEEEeCCCCC
Confidence 467999999999998753 3333444444332 257999999999999754321111111111 12 489999999999
Q ss_pred CHHHHHHHHHhhCCCCCCC
Q 017937 270 GVEDIRDWILTKLPLGPAY 288 (363)
Q Consensus 270 gi~eL~~~i~~~l~~~~~~ 288 (363)
|+++++++|.+.+...++.
T Consensus 161 gi~~l~~~l~~~l~~~~~~ 179 (221)
T 3gj0_A 161 NFEKPFLWLARKLIGDPNL 179 (221)
T ss_dssp TTTHHHHHHHHHHHTCTTC
T ss_pred CHHHHHHHHHHHHHhCccc
Confidence 9999999999988665543
No 46
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.89 E-value=6.4e-23 Score=173.66 Aligned_cols=161 Identities=18% Similarity=0.256 Sum_probs=110.9
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHH
Q 017937 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKN 188 (363)
Q Consensus 111 ~~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~ 188 (363)
|..+..+|+++|.+|||||||+|+|++..+. .....++.......+... ...+.+|||||. ..+..+.
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~~------ 74 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPTIEDSYTKICSVDGIPARLDILDTAGQ--EEFGAMR------ 74 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TTTSCCH------
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCc--cccCCCcCceEEEEEEECCEEEEEEEEECCCc--hhhHHHH------
Confidence 4446679999999999999999999988653 445555554444444433 367899999995 3333332
Q ss_pred HHhhccccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcc
Q 017937 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVS 264 (363)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vS 264 (363)
..++..+|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+...+.+ ......+....+ .+++++|
T Consensus 75 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~S 152 (181)
T 2fn4_A 75 -EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHH-VAYFEAS 152 (181)
T ss_dssp -HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECB
T ss_pred -HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEec
Confidence 23467899999999998743 33444444443321 257899999999999754322 112222322233 4899999
Q ss_pred cCCCCCHHHHHHHHHhhCC
Q 017937 265 AKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 265 Ak~g~gi~eL~~~i~~~l~ 283 (363)
|++|.|+++++++|.+.+.
T Consensus 153 a~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 153 AKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998774
No 47
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.89 E-value=7.1e-23 Score=174.28 Aligned_cols=163 Identities=18% Similarity=0.161 Sum_probs=109.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+++|.+..+. .....++...... .+......+.+|||||+ ..+..+ ...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 72 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ--EDYDRL-------RPL 72 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCS--GGGTTT-------GGG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCC--HhHHHH-------HHH
Confidence 4568999999999999999999987764 2333333322222 23344567889999995 333322 234
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHH-------------HHHHHHhcCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTD 256 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-------------~~~~~~~~~~ 256 (363)
++..+|++++|+|++++. ......+...+.....+.|+++|+||+|+.......+ ....+....+
T Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (186)
T 1mh1_A 73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 152 (186)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC
Confidence 578999999999998753 2222223333333224799999999999975432111 1122223334
Q ss_pred CCcEEEcccCCCCCHHHHHHHHHhhCCCCCC
Q 017937 257 VDEVIPVSAKYGHGVEDIRDWILTKLPLGPA 287 (363)
Q Consensus 257 ~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~ 287 (363)
..+++++||++|.|+++++++|.+.+...++
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 153 AVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhcccc
Confidence 4589999999999999999999999876543
No 48
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.89 E-value=6e-23 Score=173.52 Aligned_cols=159 Identities=19% Similarity=0.234 Sum_probs=108.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.+.....+.. ....+.+|||||. ..+..+ +..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~-------~~~ 82 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--ERFRSL-------IPS 82 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------SHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEECCCc--HHHHHH-------HHH
Confidence 45699999999999999999999877652 33444444443333333 3368999999995 333333 233
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH--HHHHHHHHhcCCCCcEEEcccCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
++..+|++++|+|++++. .....|+.........+.|+++|+||+|+...+.+ .+........ + .+++++||++
T Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~ 160 (179)
T 2y8e_A 83 YIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-N-VMFIETSAKA 160 (179)
T ss_dssp HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH-T-CEEEEEBTTT
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHc-C-CeEEEEeCCC
Confidence 467899999999998753 33344444443322357899999999999754321 2222222222 2 4899999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 017937 268 GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (363)
|.|+++++++|.+.+..
T Consensus 161 ~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 161 GYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TBSHHHHHHHHHHTCC-
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999998864
No 49
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.89 E-value=3.7e-23 Score=175.12 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=107.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+|+|++..+. ....+..+.+.....+...+ ..+.+|||||. ..+..+ +..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 77 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ--ERFRTI-------TST 77 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTG--GGCSSC-------CGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCc--hhhhhh-------HHH
Confidence 4569999999999999999999998775 34455555555444444444 78999999994 333222 234
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH--HHHHHHHHhcCCCCcEEEcccCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
++..+|++++|+|++++. .....|+..... ...+.|+++|+||+|+.....+ ......... .+ .+++++||++
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~ 154 (181)
T 3tw8_B 78 YYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-NCDDVCRILVGNKNDDPERKVVETEDAYKFAGQ-MG-IQLFETSAKE 154 (181)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH-HCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-HT-CCEEECBTTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHH-hCCCCCEEEEEECCCCchhcccCHHHHHHHHHH-cC-CeEEEEECCC
Confidence 578999999999998753 223334433332 2257899999999998754321 122222222 23 3899999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 017937 268 GHGVEDIRDWILTKLP 283 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (363)
|.|+++++++|.+.+.
T Consensus 155 ~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 155 NVNVEEMFNCITELVL 170 (181)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 50
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.89 E-value=6.8e-23 Score=179.35 Aligned_cols=160 Identities=18% Similarity=0.159 Sum_probs=96.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+++|++..+.. ....++...... .+......+.+|||||. ..+..+ ...
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~ 101 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPE--SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ--DDYDRL-------RPL 101 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCc--hhhhHH-------HHH
Confidence 55699999999999999999999877642 222333332222 23334468999999994 333322 334
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHH-------------HHHHHhcCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-------------LEWYEKFTD 256 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~-------------~~~~~~~~~ 256 (363)
++..+|++++|+|++++. ......+...+.....+.|+++|+||+|+.......+. ...+....+
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 181 (214)
T 2j1l_A 102 FYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVG 181 (214)
T ss_dssp ---CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcC
Confidence 578999999999998753 22221233333322357999999999999765432211 122333334
Q ss_pred CCcEEEcccCCCCCHHHHHHHHHhhCCC
Q 017937 257 VDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 257 ~~~i~~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
..+++++||++|.|+++++++|.+.+..
T Consensus 182 ~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 182 AVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp CSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 4589999999999999999999987653
No 51
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.89 E-value=1.2e-22 Score=171.63 Aligned_cols=159 Identities=21% Similarity=0.207 Sum_probs=107.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccccee-cCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
+..+|+++|.+|||||||+|+|.+..+... ....+.+.......+......+.+|||||. ..+..+ +..+
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~ 84 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ--ERFRAV-------TRSY 84 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTG--GGTCHH-------HHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCC--hHhhhh-------HHHH
Confidence 456999999999999999999998876421 122233333333334444578999999994 333332 3445
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH--HHHHHHHHhcCCCCcEEEcccCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
+..+|++++|+|++++. .....|+.........+.|+++|+||+|+.....+ .+....... .+ .+++++||++|
T Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~ 162 (179)
T 1z0f_A 85 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-NG-LLFLEASAKTG 162 (179)
T ss_dssp HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-TT-CEEEECCTTTC
T ss_pred hccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH-cC-CEEEEEeCCCC
Confidence 78999999999998753 23334443333222257899999999999643221 222233332 23 48999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 017937 269 HGVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (363)
.|+++++++|.+.+.
T Consensus 163 ~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 163 ENVEDAFLEAAKKIY 177 (179)
T ss_dssp TTHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988764
No 52
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.89 E-value=2e-22 Score=171.96 Aligned_cols=158 Identities=18% Similarity=0.206 Sum_probs=111.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|||||||+|+|.+.......++.+ .....+..++..+.+|||||+ ..+. ..+..++
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~--~~~~-------~~~~~~~ 83 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG----FNIKTLEHRGFKLNIWDVGGQ--KSLR-------SYWRNYF 83 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSS----EEEEEEEETTEEEEEEEECCS--HHHH-------TTGGGGC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCc----cceEEEEECCEEEEEEECCCC--HhHH-------HHHHHHh
Confidence 55699999999999999999999877322222222 222233446789999999995 2222 2234568
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSAk~ 267 (363)
..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+..+.+.. .....+++++||++
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 84 ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVT 163 (186)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCC
Confidence 8999999999998764 34445555554432 257999999999999765444433333321 12234799999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 017937 268 GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (363)
|.|+++++++|.+.+.+
T Consensus 164 ~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDISS 180 (186)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988765
No 53
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.89 E-value=1.5e-22 Score=172.80 Aligned_cols=158 Identities=20% Similarity=0.186 Sum_probs=106.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+|+|.+..+. ...++++......... .....+.+|||||. ..+..+ +..
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 71 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYSAM-------RDQ 71 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCC--CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-----CTT-------HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCchheEEEEEEECCcEEEEEEEECCCc--HHHHHH-------HHH
Confidence 3458999999999999999999988764 3444444444433333 33456888999994 333333 233
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
++..+|++++|+|++++. .....++....... ..+.|+++|+||+|+.......+....+....+ .+++++||++|
T Consensus 72 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 150 (189)
T 4dsu_A 72 YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG-IPFIETSAKTR 150 (189)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT-CCEEECCTTTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 467899999999998753 23333433332211 257999999999999753322222233332223 47999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 017937 269 HGVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (363)
.|+++++++|.+.+.
T Consensus 151 ~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 151 QGVDDAFYTLVREIR 165 (189)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998775
No 54
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.89 E-value=9.7e-23 Score=170.76 Aligned_cols=158 Identities=20% Similarity=0.184 Sum_probs=103.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
..+|+++|.+|||||||+|+|++..+.. ...+..+.+.....+. .....+.+|||||. ..+..+ +..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~~ 72 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ--ERFRTI-------TTAY 72 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTTG--GGTSCC-------CHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCC--hhhhhh-------HHHH
Confidence 3589999999999999999999887642 2333333333333333 33468999999994 333332 2334
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~g 270 (363)
+..+|++++|+|++++. .....|+.........+.|+++|+||+|+.......+....+....+ .+++++||++|.|
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 151 (170)
T 1g16_A 73 YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDN 151 (170)
T ss_dssp HTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT-CCEEECBTTTTBS
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence 78999999999998753 23334444433332357899999999999532211112222222223 3799999999999
Q ss_pred HHHHHHHHHhhCC
Q 017937 271 VEDIRDWILTKLP 283 (363)
Q Consensus 271 i~eL~~~i~~~l~ 283 (363)
+++++++|.+.+.
T Consensus 152 v~~l~~~l~~~~~ 164 (170)
T 1g16_A 152 VNEIFFTLAKLIQ 164 (170)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 55
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.89 E-value=4.9e-23 Score=177.11 Aligned_cols=161 Identities=18% Similarity=0.151 Sum_probs=108.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+|+|.+..+. .....++......... .....+.+|||||. ..+..+ +..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 90 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIP--TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ--EEYDRL-------RPL 90 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC--CccCCeeeeeeEEEEEECCEEEEEEEEECCCc--HHHHHH-------hHh
Confidence 4569999999999999999999998763 3334444333333333 34466799999994 333322 334
Q ss_pred hccccceEEEEeeCCCCCc--hHHHHHHHhccccCCCCCEEEEEcCCCCCChh---HHHHHHHHHHhcCCCCcEEEcccC
Q 017937 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAKKLEWYEKFTDVDEVIPVSAK 266 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~--~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~---~~~~~~~~~~~~~~~~~i~~vSAk 266 (363)
++..+|++++|+|++++.. .....+...+.....+.|+++|+||+|+.... ...+....+....+...++++||+
T Consensus 91 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (194)
T 3reg_A 91 SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 170 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred hccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecC
Confidence 5889999999999987542 22123333333333579999999999997431 111222223333344449999999
Q ss_pred CCCCHHHHHHHHHhhCCCC
Q 017937 267 YGHGVEDIRDWILTKLPLG 285 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~~ 285 (363)
+|.|+++++++|.+.+...
T Consensus 171 ~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 171 AKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp TTBSHHHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999887543
No 56
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.88 E-value=9.4e-23 Score=178.63 Aligned_cols=167 Identities=18% Similarity=0.159 Sum_probs=109.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccccee-cCCCCceEEEEEEEEeCCC-eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~-~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
...+|+++|.+|||||||+|+|++..+... ....+.+............ ..+.+|||||+ ..+..+.. .
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~~~-------~ 80 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ--EKKAVLKD-------V 80 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSG--GGTSCCCH-------H
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCc--hhhchHHH-------H
Confidence 455999999999999999999998765432 2333333333322222222 77999999995 33333322 2
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
++..+|++|+|+|++++. .....|+.........+.|+++|+||+|+.....+ ......+.... ..+++++||++|
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~g 159 (218)
T 4djt_A 81 YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGK-NYEYFEISAKTA 159 (218)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTC-CCEEEEEBTTTT
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc-CCcEEEEecCCC
Confidence 367899999999998754 33334444333322346899999999999765332 22222333333 358999999999
Q ss_pred CCHHHHHHHHHhhCCCCCCCCC
Q 017937 269 HGVEDIRDWILTKLPLGPAYYP 290 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~~~~ 290 (363)
.|+++++++|.+.+.......+
T Consensus 160 ~gv~~l~~~l~~~~~~~~~~~~ 181 (218)
T 4djt_A 160 HNFGLPFLHLARIFTGRPDLIF 181 (218)
T ss_dssp BTTTHHHHHHHHHHHCCTTCCB
T ss_pred CCHHHHHHHHHHHHhccccccc
Confidence 9999999999998876554433
No 57
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.88 E-value=4.6e-26 Score=225.61 Aligned_cols=227 Identities=18% Similarity=0.189 Sum_probs=153.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccc--eecCCCCceEEEEEEEEe--------------------------------
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICS-------------------------------- 159 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~--~~~~~~~~t~~~~~~~~~-------------------------------- 159 (363)
..++|+|+|.+|+|||||+|+|++.++. .++..++|++........
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4469999999999999999999998875 456677765532211100
Q ss_pred ----CCC---eeEEEEeCCCCchhhhhhHHHH--HHHHHHhhccccceEEEEeeCCCC-CchHHHHHHHhccccCCCCCE
Q 017937 160 ----GPE---YQMILYDTPGIIEKKIHMLDSM--MMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPI 229 (363)
Q Consensus 160 ----~~~---~~i~l~DtpG~~~~~~~~~~~~--~~~~~~~~~~~ad~ii~VvD~~~~-~~~~~~~~~~~~~~~~~~~pi 229 (363)
... .++.+|||||+.......+... +...+..++..+|++|+|+|+++. .......+...+.. .+.|+
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~pv 221 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--HEDKI 221 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--CGGGE
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--cCCCE
Confidence 000 3689999999854221111111 234455667899999999999873 44444555555554 56899
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 017937 230 LLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIRE 309 (363)
Q Consensus 230 ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire 309 (363)
++|+||+|+....++......+.. ....++++|.. +. +..+++.+++... +.+.+++.+|+ |
T Consensus 222 ilVlNK~Dl~~~~el~~~~~~l~~--s~~~i~~vs~l--------~~-----~~~~~~~~~~~~~-~~~~~~~~~E~--e 283 (550)
T 2qpt_A 222 RVVLNKADMVETQQLMRVYGALMW--ALGKVVGTPEV--------LR-----VYIGSFWSQPLLV-PDNRRLFELEE--Q 283 (550)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHHH--HHHHHHCCSSC--------CC-----EEESCCSSSCCSS-CTTHHHHHHHH--H
T ss_pred EEEEECCCccCHHHHHHHHHHhhc--chhheeechHh--------hh-----hccccCCCCcccC-CCCHHHHHHHH--H
Confidence 999999999987776655554431 01123334422 11 1335555555544 78899999988 8
Q ss_pred HHHhhccCCCCCceEEE-EEEEEecCCCeeEEEEEEEEeeCCceeEEecCCCCC
Q 017937 310 KIFMQYRNEVPYACQVN-VVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKVSPF 362 (363)
Q Consensus 310 ~i~~~~~~evp~s~~i~-~~~~~~~~~~~~~i~~~i~~~~~~q~~ivig~~G~~ 362 (363)
+++..+ .++||++.+. +..+..+ ....+|++.|+|++.+|+.|+||++|++
T Consensus 284 ~l~~~l-~elP~~~~v~~i~~~~~~-~~~~~I~a~I~v~~~sqk~i~iGk~g~~ 335 (550)
T 2qpt_A 284 DLFRDI-QGLPRHAALRKLNDLVKR-ARLVRVHAYIISYLKKEMPTVFGKENKK 335 (550)
T ss_dssp HHHHHH-HTTGGGHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSCSSSCHHHHH
T ss_pred HHHHHh-hhccHHHHHHHHHHHhcc-CCeEEEEEEEEEeecccceeEECCchHH
Confidence 888885 8999999998 4555543 2457799999999999999999999864
No 58
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.88 E-value=9.1e-23 Score=175.21 Aligned_cols=159 Identities=17% Similarity=0.158 Sum_probs=108.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecC-CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
+..+|+++|.+|||||||+|+|++..+..... ..+.+.......+......+.+|||||+. .+..+ +..+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~ 94 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE--RYRAI-------TSAY 94 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCC--TTCTT-------HHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCch--hhhhh-------hHHH
Confidence 44589999999999999999999987653222 22333333333344456789999999963 33322 3344
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCcEEEcccCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
+..+|++|+|+|++++. .....|+.........+.|+++|+||+|+...+. ...... +....+ .+++++||++|
T Consensus 95 ~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~-~~~~~~Sa~~~ 172 (193)
T 2oil_A 95 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARM-FAENNG-LLFLETSALDS 172 (193)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHH-HHHHTT-CEEEEECTTTC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHH-HHHHcC-CEEEEEeCCCC
Confidence 78999999999998754 2334444444333235789999999999975322 122222 222233 48999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 017937 269 HGVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (363)
.|+++++++|.+.+.
T Consensus 173 ~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 173 TNVELAFETVLKEIF 187 (193)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987653
No 59
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.88 E-value=8.1e-23 Score=170.63 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=104.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+|+|.+..+. .....++....... .......+.+|||||. ..+..+ +..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~ 71 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ--EDYAAI-------RDN 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----CHHH-------HHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECCEEEEEEEEECCCc--chhHHH-------HHH
Confidence 4468999999999999999999988764 33333333333322 3333468999999994 333222 334
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccC-CCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCcEEEcccC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAK 266 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~-~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSAk 266 (363)
++..+|++++|+|++++. .....++........ .+.|+++|+||+|+..... ..+........ + .+++++||+
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~ 149 (168)
T 1u8z_A 72 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQW-N-VNYVETSAK 149 (168)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHH-T-CEEEECCTT
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHc-C-CeEEEeCCC
Confidence 577899999999998754 223333333332211 4799999999999965322 22222333222 2 479999999
Q ss_pred CCCCHHHHHHHHHhhCC
Q 017937 267 YGHGVEDIRDWILTKLP 283 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l~ 283 (363)
+|.|+++++++|.+.+.
T Consensus 150 ~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 150 TRANVDKVFFDLMREIR 166 (168)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987653
No 60
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.88 E-value=1.4e-22 Score=171.58 Aligned_cols=155 Identities=15% Similarity=0.213 Sum_probs=102.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
.+..+|+++|.+|||||||+++|++..+....++.+... .....+......+.+|||||... ..+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~--------------~~~ 69 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD--------------AKF 69 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC--------------HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch--------------hHH
Confidence 355699999999999999999999988764222222221 11222333346789999999532 123
Q ss_pred ccccceEEEEeeCCCCC--chHHHH---HHHhccccCCCCCEEEEEcCCCCCC--hh--HHHHHHHHHHhcCCCCcEEEc
Q 017937 193 GINADCIVVLVDACKAP--ERIDEI---LEEGVGDHKDKLPILLVLNKKDLIK--PG--EIAKKLEWYEKFTDVDEVIPV 263 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~---~~~~~~~~~~~~piilV~NK~Dl~~--~~--~~~~~~~~~~~~~~~~~i~~v 263 (363)
++.+|++++|+|++++. .....| +.........+.|+++|+||+|+.. .+ ...+........ +..+++++
T Consensus 70 ~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~-~~~~~~~~ 148 (178)
T 2iwr_A 70 SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM-KRCSYYET 148 (178)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH-SSEEEEEE
T ss_pred HHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh-cCCeEEEE
Confidence 67899999999998754 233332 2222222225789999999999932 11 112222222222 23589999
Q ss_pred ccCCCCCHHHHHHHHHhhCC
Q 017937 264 SAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 264 SAk~g~gi~eL~~~i~~~l~ 283 (363)
||++|.|++++|++|.+.+.
T Consensus 149 Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 149 XATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp BTTTTBTHHHHHHHHHHHHH
T ss_pred eccccCCHHHHHHHHHHHHH
Confidence 99999999999999987663
No 61
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.88 E-value=1.6e-22 Score=172.31 Aligned_cols=158 Identities=20% Similarity=0.164 Sum_probs=108.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.......+... ...+.+|||||. ..+. ..+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~~ 78 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ--ERFR-------SVTRS 78 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCS--GGGH-------HHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCc--HHHH-------HHHHH
Confidence 45699999999999999999999887653 233333433333333333 368999999995 3322 23556
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH--HHHHHHHHhcCCCCcEEEcccCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
++..+|++++|+|++++. .....|+.........+.|+++|+||+|+.....+ .+....... .+ .+++++||++
T Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~ 156 (186)
T 2bme_A 79 YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQE-NE-LMFLETSALT 156 (186)
T ss_dssp TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEECCTTT
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH-cC-CEEEEecCCC
Confidence 689999999999998753 22334443332222267899999999999643221 222222222 23 4899999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 017937 268 GHGVEDIRDWILTKLP 283 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (363)
|.|+++++++|.+.+.
T Consensus 157 ~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 157 GENVEEAFVQCARKIL 172 (186)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 62
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.88 E-value=2.8e-23 Score=192.52 Aligned_cols=202 Identities=20% Similarity=0.266 Sum_probs=133.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccc-----ceecCCC---CceEE---------------------------------
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKL-----SIVTNKP---QTTRH--------------------------------- 152 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~-----~~~~~~~---~~t~~--------------------------------- 152 (363)
..++|+|+|.+|||||||+|+|+|..+ ..++..| .+++.
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 456999999999999999999999886 3334444 22221
Q ss_pred -----EE-------------EEEEeCCCeeEEEEeCCCCchhh----hhhHHHHHHHHHHhhccccceEEEEeeCC-CCC
Q 017937 153 -----RI-------------LGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIVVLVDAC-KAP 209 (363)
Q Consensus 153 -----~~-------------~~~~~~~~~~i~l~DtpG~~~~~----~~~~~~~~~~~~~~~~~~ad~ii~VvD~~-~~~ 209 (363)
.. ..+....+.++.+|||||+.... ...+...+...+..++..+|++++|+|++ .+.
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 00 00123345789999999985411 12344556677788899999999999974 333
Q ss_pred c-hHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhc-----CCCCcEEEcccCC---CCCHHHHHHHHHh
Q 017937 210 E-RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF-----TDVDEVIPVSAKY---GHGVEDIRDWILT 280 (363)
Q Consensus 210 ~-~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~i~~vSAk~---g~gi~eL~~~i~~ 280 (363)
. .....+...+.. .+.|+++|+||+|+...... ....+... .++.+++.+||.+ +.|+.++++.+.+
T Consensus 183 ~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~ 258 (315)
T 1jwy_B 183 ANSDALQLAKEVDP--EGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEIL 258 (315)
T ss_dssp TTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHhCC--CCCcEEEEEcCcccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHH
Confidence 2 222245555554 57899999999999864431 11222221 1223444555666 8999999999999
Q ss_pred hCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCc
Q 017937 281 KLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYA 322 (363)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s 322 (363)
.++.+++ |+ +..++.+.+++..+ +|++++.+++.++||.
T Consensus 259 ~~~~~~~-~~-~~~~~~~~~~l~~~-lre~l~~~~~~elP~~ 297 (315)
T 1jwy_B 259 YFKNHPI-YK-SIANRSGTAYLSKT-LNKLLMFHIRDTLPDL 297 (315)
T ss_dssp HHHTCTT-GG-GSGGGCSHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHhCCCc-cc-cchhccCHHHHHHH-HHHHHHHHHHHHhHHH
Confidence 9988877 44 55566677777664 9999999999999875
No 63
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=174.84 Aligned_cols=159 Identities=19% Similarity=0.153 Sum_probs=105.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+++|.+..+.. ...+..+.+.....+..+ ...+.+|||||. ..+.. .+..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~ 97 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ--ERFRT-------ITQS 97 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTC--GGGHH-------HHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCc--HhHHH-------HHHH
Confidence 34589999999999999999999887642 122222222222333333 368999999995 33332 2445
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCcEEEcccCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
+++.+|++|+|+|++++. .....|+.........+.|+++|+||+|+...+. ..+..... ...+..+++++||++
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-~~~~~~~~~~~SA~~ 176 (201)
T 2hup_A 98 YYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLA-EHYDILCAIETSAKD 176 (201)
T ss_dssp HHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-HHTTCSEEEECBTTT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHH-HHcCCCEEEEEeCCC
Confidence 578999999999998653 3334444444332236789999999999975322 22222322 333444899999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 017937 268 GHGVEDIRDWILTKLP 283 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (363)
|.|+++++++|.+.+.
T Consensus 177 g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 177 SSNVEEAFLRVATELI 192 (201)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998774
No 64
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.88 E-value=2.9e-23 Score=188.64 Aligned_cols=165 Identities=26% Similarity=0.289 Sum_probs=118.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh----hhHHHHHHHHH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKNV 189 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~----~~~~~~~~~~~ 189 (363)
+..+|+++|.+|||||||+|+|++..+ .++..+++|.+.....+...+..+.+|||||+..... ..+.......
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~- 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH- 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHH-
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHH-
Confidence 446899999999999999999999885 5788999999988888888888999999999754321 1222222111
Q ss_pred HhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
......+|++++|+|+++.. .. ..+...+.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~-~~-~~~~~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg-~~~i~~SA~~g~ 154 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLE-RN-LYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIEIDALSARLG-CPVIPLVSTRGR 154 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHH-HH-HHHHHHHHH--HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT-SCEEECCCGGGH
T ss_pred HHhhcCCCEEEEEecCCChH-HH-HHHHHHHHh--cCCCEEEEEECccchhhhhHHHHHHHHHHhcC-CCEEEEEcCCCC
Confidence 12247999999999998732 22 222233333 47999999999998643321111122222223 489999999999
Q ss_pred CHHHHHHHHHhhCCCC
Q 017937 270 GVEDIRDWILTKLPLG 285 (363)
Q Consensus 270 gi~eL~~~i~~~l~~~ 285 (363)
|+++|+++|.+.++..
T Consensus 155 gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 155 GIEALKLAIDRYKANE 170 (274)
T ss_dssp HHHHHHHHHHTCCCCC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999998754
No 65
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.88 E-value=1.8e-22 Score=171.63 Aligned_cols=158 Identities=20% Similarity=0.214 Sum_probs=105.6
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHH
Q 017937 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (363)
Q Consensus 112 ~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 189 (363)
..+..+|+++|.+|||||||+|+|++..+. .....++......... .....+.+|||||. ..+..+.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~------- 83 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ--EEFSAMR------- 83 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCSC--GGGCSSH-------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCccceeEEEEEeCCcEEEEEEEECCCc--hhhHHHH-------
Confidence 345669999999999999999999987654 2333333333233333 33455778999995 3443332
Q ss_pred HhhccccceEEEEeeCCCCC--chHHHHHHHhccc-cCCCCCEEEEEcCCCCCChhHH--HHHHHHHHhcCCCCcEEEcc
Q 017937 190 RSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVS 264 (363)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vS 264 (363)
..+++.+|++++|+|++++. .....|+...... ...+.|+++|+||+|+...+.+ .+....... .+ .+++++|
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~S 161 (183)
T 3kkq_A 84 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATK-YN-IPYIETS 161 (183)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHH-HT-CCEEEEB
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHH-hC-CeEEEec
Confidence 23467899999999998753 3334444433321 1267899999999999753221 222222222 23 4799999
Q ss_pred cC-CCCCHHHHHHHHHhhC
Q 017937 265 AK-YGHGVEDIRDWILTKL 282 (363)
Q Consensus 265 Ak-~g~gi~eL~~~i~~~l 282 (363)
|+ +|.|++++|++|.+.+
T Consensus 162 a~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 162 AKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp CSSSCBSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 99 9999999999998765
No 66
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.88 E-value=8.7e-23 Score=172.61 Aligned_cols=158 Identities=17% Similarity=0.215 Sum_probs=109.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+.++|+++|.+|||||||+++|++..+. ....++++.......+...+..+.+|||||+. .+..+ +..++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~~~ 76 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVT-EQEAGGITQHIGAYQVTVNDKKITFLDTPGHE--AFTTM-------RARGA 76 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSS-CSSCCSSSTTCCCCEEEETTEEEEESCCCSSS--SSSCS-------CCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccc-cCCCCceeEeeeEEEEEeCCceEEEEECCCCH--HHHHH-------HHHHH
Confidence 5669999999999999999999998765 23344444443333445566889999999953 33222 22447
Q ss_pred cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcC-------CCCcEEEcccC
Q 017937 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT-------DVDEVIPVSAK 266 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~-------~~~~i~~vSAk 266 (363)
..+|++++|+|++++...........+.. .+.|+++|+||+|+..... .+....+.... ...+++++||+
T Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~l~~~~~--~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 77 QVTDIVILVVAADDGVMPQTVEAINHAKA--ANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp CCCCEEEEEEETTCCCCHHHHHHHHHHGG--GSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred hhCCEEEEEEECCCCCcHHHHHHHHHHHh--CCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 88999999999987654433333333333 5789999999999986421 12222222211 12479999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 017937 267 YGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (363)
+|.|+++++++|.+.+..
T Consensus 154 ~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 154 TKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhhh
Confidence 999999999999887643
No 67
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.88 E-value=4.9e-23 Score=180.37 Aligned_cols=163 Identities=13% Similarity=0.047 Sum_probs=107.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 190 (363)
.+..+|+++|.+|||||||+++|++..+. .....++...... .+......+.+|||||. ..+..+ +.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~ 93 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGS--PYYDNV-------RP 93 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCS--GGGTTT-------GG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCC--HhHHHH-------HH
Confidence 35669999999999999999999988764 2333333332222 23445578999999994 343333 33
Q ss_pred hhccccceEEEEeeCCCCCc--hHHHHHHHhccccCCCCCEEEEEcCCCCCChh------------HH-HHHHHHHHhcC
Q 017937 191 SAGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPG------------EI-AKKLEWYEKFT 255 (363)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~~--~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~------------~~-~~~~~~~~~~~ 255 (363)
.+++.+|++|+|+|+++... .....|...+.....+.|+++|+||+|+.... .+ .+....+....
T Consensus 94 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 173 (214)
T 3q3j_B 94 LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL 173 (214)
T ss_dssp GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc
Confidence 45889999999999987642 21122333333333579999999999996421 00 11122222233
Q ss_pred CCCcEEEcccCCCCC-HHHHHHHHHhhCCCCC
Q 017937 256 DVDEVIPVSAKYGHG-VEDIRDWILTKLPLGP 286 (363)
Q Consensus 256 ~~~~i~~vSAk~g~g-i~eL~~~i~~~l~~~~ 286 (363)
+..++++|||++|.| ++++|++|.+.+....
T Consensus 174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 174 GAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred CCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 444899999999998 9999999999876543
No 68
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.88 E-value=6.9e-23 Score=170.86 Aligned_cols=156 Identities=20% Similarity=0.203 Sum_probs=103.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+|+|.+..+.. ....++...... .+......+.+|||||. ..+..+ ...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~ 70 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGT--EQFASM-------RDL 70 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TCCHHH-------HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHH
Confidence 34589999999999999999999877642 222333222222 23333456999999994 333322 333
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHH--HHHHHHHHhcCCCCcEEEcccC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAK 266 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSAk 266 (363)
++..+|++++|+|++++. .....++....... ..+.|+++|+||+|+.....+ .+....... .+ .+++++||+
T Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~ 148 (167)
T 1kao_A 71 YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE-WG-CPFMETSAK 148 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-HT-SCEEEECTT
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHH-hC-CCEEEecCC
Confidence 467899999999998743 23334443333221 157999999999998653321 112222222 23 379999999
Q ss_pred CCCCHHHHHHHHHhhC
Q 017937 267 YGHGVEDIRDWILTKL 282 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l 282 (363)
+|.|+++++++|.+.+
T Consensus 149 ~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 149 SKTMVDELFAEIVRQM 164 (167)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999998765
No 69
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.88 E-value=5.8e-23 Score=174.42 Aligned_cols=163 Identities=23% Similarity=0.242 Sum_probs=107.6
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 190 (363)
.+..+|+++|.+|||||||+|+|++..+. .....++........... ...+.+|||||+. .+..+ ..
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~ 72 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFV--DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQD--EYSIF-------PQ 72 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCC--TTCCC-------CG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEeCCCch--hhhHH-------HH
Confidence 35679999999999999999999977653 334444443333333333 3678999999953 32222 23
Q ss_pred hhccccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccC
Q 017937 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAK 266 (363)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk 266 (363)
.+++.+|++++|+|+++.. .....|+....... ..+.|+++|+||+|+.....+ .+....+....+ .+++++||+
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 151 (181)
T 3t5g_A 73 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWN-AAFLESSAK 151 (181)
T ss_dssp GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CEEEECCTT
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhC-CcEEEEecC
Confidence 3478999999999998743 23333443333222 157899999999999644322 112222333333 389999999
Q ss_pred CCCCHHHHHHHHHhhCCCCCC
Q 017937 267 YGHGVEDIRDWILTKLPLGPA 287 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~~~~ 287 (363)
+|.|+++++++|.+.+.....
T Consensus 152 ~~~~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 152 ENQTAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp SHHHHHHHHHHHHHHHHTC--
T ss_pred CCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999998865443
No 70
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.8e-22 Score=173.56 Aligned_cols=158 Identities=16% Similarity=0.137 Sum_probs=106.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+++|.+..+. .....++.......+... ...+.+|||||.. .+..+ +..
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~--~~~~~-------~~~ 85 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE--DYDRL-------RPL 85 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSS--SSTTT-------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCc--chhHH-------HHH
Confidence 4569999999999999999999988653 333444433333333333 4789999999953 33222 334
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-------------HHHHHHHHhcCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AKKLEWYEKFTD 256 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-------------~~~~~~~~~~~~ 256 (363)
++..+|++++|+|++++. ......+...+.....+.|+++|+||+|+...... .+....+....+
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 165 (194)
T 2atx_A 86 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG 165 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC
Confidence 588999999999998753 23331223333322247999999999999764211 111122222224
Q ss_pred CCcEEEcccCCCCCHHHHHHHHHhhC
Q 017937 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 257 ~~~i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
..+++++||++|.|+++++++|.+.+
T Consensus 166 ~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 166 ACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 44799999999999999999998765
No 71
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.88 E-value=2.8e-22 Score=175.13 Aligned_cols=159 Identities=19% Similarity=0.250 Sum_probs=102.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC-CeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
+..+|+++|.+|||||||+++|++..+. ...+.++.......+... +..+.+|||||+ ..+.. ..+..+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~------~~~~~~ 75 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--DTQTSITDSSAIYKVNNNRGNSLTLIDLPGH--ESLRF------QLLDRF 75 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--CBCCCCSCEEEEEECSSTTCCEEEEEECCCC--HHHHH------HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cccCCcceeeEEEEecCCCccEEEEEECCCC--hhHHH------HHHHHH
Confidence 4569999999999999999999988764 333444433333233322 678999999995 33221 023345
Q ss_pred ccccceEEEEeeCCCCCc---hHHHHHHHhccc---cCCCCCEEEEEcCCCCCChhHHHHHHHHHH--------------
Q 017937 193 GINADCIVVLVDACKAPE---RIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGEIAKKLEWYE-------------- 252 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~---~~~~~~~~~~~~---~~~~~piilV~NK~Dl~~~~~~~~~~~~~~-------------- 252 (363)
++.+|++|+|+|+++... ....++...+.. ...+.|+++|+||+|+............+.
T Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 155 (214)
T 2fh5_B 76 KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAP 155 (214)
T ss_dssp GGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---
T ss_pred HhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcc
Confidence 889999999999987321 222333333221 125789999999999975433322222111
Q ss_pred ---------h-cCC-------------CCcEEEcccCCC------CCHHHHHHHHHhhC
Q 017937 253 ---------K-FTD-------------VDEVIPVSAKYG------HGVEDIRDWILTKL 282 (363)
Q Consensus 253 ---------~-~~~-------------~~~i~~vSAk~g------~gi~eL~~~i~~~l 282 (363)
. ..+ ..++++|||++| .||+++|++|.+.+
T Consensus 156 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 156 STLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 0 111 457999999999 99999999998754
No 72
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.88 E-value=4.2e-23 Score=200.85 Aligned_cols=161 Identities=24% Similarity=0.323 Sum_probs=122.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
.+|+++|.||||||||+|+|++.++..+++.+++|++.....+..++..+.+|||||+.......+..........++..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~ 323 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 323 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhc
Confidence 58999999999999999999999887789999999998888888888999999999975122122222222344556789
Q ss_pred cceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHH
Q 017937 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (363)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~ 275 (363)
+|++|+|+|++++.......+.+.+ .++|+++|+||+|+.......+..... . ...+++++||++|.|+++|+
T Consensus 324 aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~~~~~~~~~~~-~--~~~~~i~iSAktg~Gi~eL~ 396 (482)
T 1xzp_A 324 ADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINEEEIKNKL-G--TDRHMVKISALKGEGLEKLE 396 (482)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHH-T--CSTTEEEEEGGGTCCHHHHH
T ss_pred ccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccccCHHHHHHHh-c--CCCcEEEEECCCCCCHHHHH
Confidence 9999999999887654444444443 368999999999997542222222221 1 22479999999999999999
Q ss_pred HHHHhhCC
Q 017937 276 DWILTKLP 283 (363)
Q Consensus 276 ~~i~~~l~ 283 (363)
++|.+.+.
T Consensus 397 ~~l~~~~~ 404 (482)
T 1xzp_A 397 ESIYRETQ 404 (482)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHHh
Confidence 99999765
No 73
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.88 E-value=7e-22 Score=170.47 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=104.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC-------------------------------
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE------------------------------- 162 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~------------------------------- 162 (363)
+..+|+++|.+|||||||+|+|++..+.. ...+.+........+...+
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHE-NTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCC-CcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 45699999999999999999999987642 2222222233222233222
Q ss_pred --------eeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEE
Q 017937 163 --------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLV 232 (363)
Q Consensus 163 --------~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV 232 (363)
..+.+|||||. ..+..+ +..++..+|++++|+|++++. .....|+...... ...|+++|
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~--~~~piilv 153 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQ--ERYASI-------VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS--SNYIIILV 153 (208)
T ss_dssp CCCTTTCEEEEEEEECTTG--GGCTTT-------HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--SCCEEEEE
T ss_pred cccCccceeEEEEEECCCc--HHHHHH-------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh--CCCcEEEE
Confidence 78999999994 333332 334578999999999998763 3334444444433 34999999
Q ss_pred EcCCCCCCh-hHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 233 LNKKDLIKP-GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 233 ~NK~Dl~~~-~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
+||+|+... ....+....... .+ .+++++||++|.|+++++++|.+.+.
T Consensus 154 ~NK~D~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 154 ANKIDKNKFQVDILEVQKYAQD-NN-LLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp EECTTCC-CCSCHHHHHHHHHH-TT-CEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred EECCCcccccCCHHHHHHHHHH-cC-CcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 999994221 122333333333 23 48999999999999999999987653
No 74
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=2e-22 Score=175.63 Aligned_cols=159 Identities=19% Similarity=0.161 Sum_probs=106.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+|+|++..+. ....+..+.+.....+...+ ..+.+|||||+ ..+..+ +..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 88 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ--ERFRTI-------TTA 88 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCC-CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTG--GGGTCC-------CHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEEECCEEEEEEEEeCCCc--HHHHHH-------HHH
Confidence 4569999999999999999999988764 23334444333333333333 78999999994 333332 234
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
++..+|++++|+|++++. .....|+.........+.|+++|+||+|+.......+....+....+ .+++++||++|.
T Consensus 89 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 167 (213)
T 3cph_A 89 YYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDD 167 (213)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT-CCEEECBTTTTB
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 478999999999998753 23334444433322247899999999999532211111222222223 379999999999
Q ss_pred CHHHHHHHHHhhCC
Q 017937 270 GVEDIRDWILTKLP 283 (363)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (363)
|+++++++|.+.+.
T Consensus 168 gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 168 NVNEIFFTLAKLIQ 181 (213)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 75
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.88 E-value=2e-22 Score=174.86 Aligned_cols=161 Identities=22% Similarity=0.208 Sum_probs=108.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.+.....+. .....+.+|||||. ..+..+ +..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 76 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ--ERFQSL-------GVA 76 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSS--GGGSCS-------CCG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEeCCCc--HHHHHh-------HHH
Confidence 44589999999999999999999987652 2333333444333333 34478999999995 333222 234
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhcccc----CCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEccc
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~----~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (363)
++..+|++|+|+|++++. .....|+....... ..+.|+++|+||+|+.......+....+.......+++++||
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (207)
T 1vg8_A 77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSA 156 (207)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBT
T ss_pred HHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeC
Confidence 578999999999998753 23334443333221 146899999999999743222222223333233458999999
Q ss_pred CCCCCHHHHHHHHHhhCCC
Q 017937 266 KYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l~~ 284 (363)
++|.|+++++++|.+.+..
T Consensus 157 ~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 157 KEAINVEQAFQTIARNALK 175 (207)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988753
No 76
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.88 E-value=1.5e-22 Score=173.72 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=105.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecC-CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
+..+|+++|.+|||||||+|+|++..+..... ..+.+.......+......+.+|||||. ..+..+ +..+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 90 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ--ESFRSI-------TRSY 90 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTG--GGTSCC-------CHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc--hhhhhh-------HHHH
Confidence 44589999999999999999999887653222 2222232222233334478999999994 444333 2334
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH--HHHHHHHHhcCCCCcEEEcccCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
++.+|++++|+|++++. .....|+.........+.|+++|+||+|+...+.+ .+....... .+ .+++++||++|
T Consensus 91 ~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~~ 168 (191)
T 2a5j_A 91 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFARE-HG-LIFMETSAKTA 168 (191)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-HT-CEEEEECTTTC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHH-cC-CEEEEEeCCCC
Confidence 78999999999998753 33344444443322357999999999999643221 222222222 23 38999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 017937 269 HGVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (363)
.|+++++++|.+.+.
T Consensus 169 ~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 169 CNVEEAFINTAKEIY 183 (191)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987663
No 77
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.4e-22 Score=175.77 Aligned_cols=159 Identities=19% Similarity=0.203 Sum_probs=107.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+++|++..+.. ...+..+.+.....+. .....+.+|||||. ..+. ..+..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~-------~~~~~ 94 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ--ERFR-------SITQS 94 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGH-------HHHGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCc--HHHH-------HHHHH
Confidence 44599999999999999999999887642 2333333333333333 33468999999994 3332 23456
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
+++.+|++++|+|++++. .....|+.........+.|+++|+||+|+.....+ .+....+....+ .+++++||++|
T Consensus 95 ~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~g 173 (201)
T 2ew1_A 95 YYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQD-MYYLETSAKES 173 (201)
T ss_dssp GSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-CCEEECCTTTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CEEEEEeCCCC
Confidence 689999999999998753 22334444333222357899999999999743221 111122222222 47999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 017937 269 HGVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (363)
.|+++++++|.+.+.
T Consensus 174 ~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 174 DNVEKLFLDLACRLI 188 (201)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987764
No 78
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.88 E-value=1.9e-22 Score=175.12 Aligned_cols=158 Identities=18% Similarity=0.141 Sum_probs=108.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeC--CCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+++|++..+. .....++.......... ..+.+.+|||||+ ..+..+ ...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~ 97 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL--EDYDRL-------RPL 97 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCSEEEEEEEEECC-CEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCC--CCcCCeecceeEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHH
Confidence 4569999999999999999999987764 34445555544444443 3456679999995 333322 334
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHH-------------HHHHHHhcCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTD 256 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-------------~~~~~~~~~~ 256 (363)
++..+|++++|+|++++. ......+...+.....+.|+++|+||+|+.......+ ....+....+
T Consensus 98 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 4gzl_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcC
Confidence 588999999999998754 2222223333333225799999999999976543211 1122333345
Q ss_pred CCcEEEcccCCCCCHHHHHHHHHhhC
Q 017937 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 257 ~~~i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
..+++++||++|.|+++++++|.+.+
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 178 AVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 55799999999999999999998765
No 79
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.88 E-value=2.7e-22 Score=171.71 Aligned_cols=162 Identities=21% Similarity=0.211 Sum_probs=104.0
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceec-CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
.+..+|+++|.+|||||||+|+|++..+.... ...+.+.......+......+.+|||||. ..+. ...+..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~------~~~~~~ 89 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ--ERFR------KSMVQH 89 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS--HHHH------TTTHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc--hhhh------hhhhHH
Confidence 35569999999999999999999987765321 12222222222223333478999999994 3322 022344
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
+++.+|++|+|+|+++.. .....|+....... ..+.|+++|+||+|+.....+ .+....+....+ .+++++||++
T Consensus 90 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 168 (189)
T 1z06_A 90 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHS-MPLFETSAKN 168 (189)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CCEEECCSSS
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcC-CEEEEEeCCc
Confidence 578999999999998743 23334444333322 267999999999999654321 112223333333 3899999999
Q ss_pred C---CCHHHHHHHHHhhCC
Q 017937 268 G---HGVEDIRDWILTKLP 283 (363)
Q Consensus 268 g---~gi~eL~~~i~~~l~ 283 (363)
| .|+++++++|.+.+.
T Consensus 169 ~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 169 PNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GGGGSCHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHh
Confidence 9 999999999988764
No 80
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.88 E-value=1.8e-22 Score=172.78 Aligned_cols=158 Identities=13% Similarity=0.112 Sum_probs=106.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccccee-cCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
..+|+++|.+|||||||+|+|++..+... ....+.+..............+.+|||||.. .+..+ +..++
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~~~ 92 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE--RYRTI-------TTAYY 92 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCC--SSCCS-------GGGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcH--HHhhh-------HHHhc
Confidence 45899999999999999999998876432 2233333333333344456789999999953 33222 33457
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH--HHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
..+|++++|+|++++. .....|+.........+.|+++|+||+|+.....+ .+....... .+ .+++++||++|.
T Consensus 93 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~g~ 170 (189)
T 2gf9_A 93 RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADD-LG-FEFFEASAKENI 170 (189)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-HT-CEEEECBTTTTB
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHH-cC-CeEEEEECCCCC
Confidence 8999999999998753 23334443333222257899999999999753321 222222222 23 389999999999
Q ss_pred CHHHHHHHHHhhCC
Q 017937 270 GVEDIRDWILTKLP 283 (363)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (363)
|+++++++|.+.+.
T Consensus 171 gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 171 NVKQVFERLVDVIC 184 (189)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987663
No 81
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=7.1e-23 Score=198.19 Aligned_cols=169 Identities=21% Similarity=0.263 Sum_probs=118.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~--~~~~~~~~~~~~~ 191 (363)
...+|+++|.+|||||||+|+|++..+..++..+++|++.....+..++..+.+|||||+..... ..+..........
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 45699999999999999999999998877889999999988777777888999999999632111 1112222222334
Q ss_pred hccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhH--HHHHHHHHHh---cCCCCcEEEcccC
Q 017937 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEK---FTDVDEVIPVSAK 266 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~---~~~~~~i~~vSAk 266 (363)
++..+|++++|+|++++....+..+...+.. .++|+++|+||+|+.+... ..+....+.. .....+++++||+
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~ 331 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSAL 331 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTT
T ss_pred HHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecc
Confidence 5788999999999999876666556555554 6799999999999976432 2222222222 2234689999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 017937 267 YGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (363)
+|.|++++++.+.+.+..
T Consensus 332 tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 332 TKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp TCTTGGGHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999987754
No 82
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.88 E-value=1.1e-22 Score=171.99 Aligned_cols=161 Identities=19% Similarity=0.148 Sum_probs=104.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC---CeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 190 (363)
+..+|+++|.+|||||||+++|.+..+.. ...+..+.+.....+... ...+.+|||||. ..+..+ +.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~-------~~ 74 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGK-QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ--TIGGKM-------LD 74 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTH-HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTC--CTTCTT-------HH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCC--ccccch-------hh
Confidence 45699999999999999999999877642 111222222222233322 378999999995 333333 33
Q ss_pred hhccccceEEEEeeCCCCC--chHHHHHHHhcccc--CCCCC-EEEEEcCCCCCChhHH--HHHHHHHHhcCCCCcEEEc
Q 017937 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH--KDKLP-ILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPV 263 (363)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~--~~~~p-iilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~v 263 (363)
.++..+|++++|+|++++. .....|+....... ..+.| +++|+||+|+...+.+ .+....... .+ .+++++
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~ 152 (178)
T 2hxs_A 75 KYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQE-NG-FSSHFV 152 (178)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHH-HT-CEEEEE
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHH-cC-CcEEEE
Confidence 4478999999999998754 23333333322211 02455 8999999999653221 222222222 23 489999
Q ss_pred ccCCCCCHHHHHHHHHhhCCCCC
Q 017937 264 SAKYGHGVEDIRDWILTKLPLGP 286 (363)
Q Consensus 264 SAk~g~gi~eL~~~i~~~l~~~~ 286 (363)
||++|.|+++++++|.+.+...+
T Consensus 153 Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 153 SAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp CTTTCTTHHHHHHHHHHHHTTCC
T ss_pred eCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999887644
No 83
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.88 E-value=4.3e-22 Score=170.09 Aligned_cols=155 Identities=15% Similarity=0.186 Sum_probs=104.3
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHHHHHHHH
Q 017937 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (363)
Q Consensus 111 ~~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~ 188 (363)
+..+..+|+++|.+|||||||+++|++..+... ..+ + .......+ ......+.+|||||.. .+.
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-~~~-t-~~~~~~~~~~~~~~~~l~i~Dt~G~~--~~~--------- 81 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQE-ESP-E-GGRFKKEIVVDGQSYLLLIRDEGGPP--ELQ--------- 81 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCC-CCT-T-CEEEEEEEEETTEEEEEEEEECSSSC--CHH---------
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCC-C-cceEEEEEEECCEEEEEEEEECCCCh--hhh---------
Confidence 344667999999999999999999999876532 122 2 22222333 3334678889999953 221
Q ss_pred HHhhccccceEEEEeeCCCCC--chHHHHHHHhccccC-CCCCEEEEEcCCCCCC--hh--HHHHHHHHHHhcCCCCcEE
Q 017937 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIK--PG--EIAKKLEWYEKFTDVDEVI 261 (363)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~-~~~piilV~NK~Dl~~--~~--~~~~~~~~~~~~~~~~~i~ 261 (363)
+++.+|++++|+|+++.. .....|+..+..... .+.|+++|+||+|+.. .. ...+. ..+....+..+++
T Consensus 82 ---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~-~~~~~~~~~~~~~ 157 (184)
T 3ihw_A 82 ---FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRA-RKLSTDLKRCTYY 157 (184)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHH-HHHHHHTTTCEEE
T ss_pred ---eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHH-HHHHHHcCCCeEE
Confidence 366799999999998754 333444444433211 4689999999999942 11 11222 2233333445899
Q ss_pred EcccCCCCCHHHHHHHHHhhCC
Q 017937 262 PVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 262 ~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
+|||++|.|++++|++|.+.+.
T Consensus 158 e~Sa~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 158 ETCATYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 84
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.88 E-value=1.5e-22 Score=172.93 Aligned_cols=166 Identities=28% Similarity=0.328 Sum_probs=114.1
Q ss_pred CCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 112 ~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+++..+|+++|++|||||||+++|.+..+. +...+++|.+.....+...+..+.+|||||+...........+ ...
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~~ 79 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEII---ARD 79 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHH---HHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHH---HHH
Confidence 346679999999999999999999997654 5667888877777777777899999999996432111111111 112
Q ss_pred hc--cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 192 AG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 192 ~~--~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
++ ..+|++++|+|+++ ......++... .. .+.|+++|+||+|+.....+......+....+ .+++++||++|.
T Consensus 80 ~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~-~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 80 YIINEKPDLVVNIVDATA-LERNLYLTLQL-ME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-VKVVPLSAAKKM 154 (188)
T ss_dssp HHHHHCCSEEEEEEEGGG-HHHHHHHHHHH-HT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBGGGTB
T ss_pred HHhccCCCEEEEEecchh-HHHHHHHHHHH-Hh--cCCCEEEEEEhhhccccccchHHHHHHHHHhC-CCeEEEEecCCC
Confidence 22 35899999999875 33333343333 33 57899999999998543221111122222222 379999999999
Q ss_pred CHHHHHHHHHhhCCCCC
Q 017937 270 GVEDIRDWILTKLPLGP 286 (363)
Q Consensus 270 gi~eL~~~i~~~l~~~~ 286 (363)
|+++++++|.+.+....
T Consensus 155 ~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 155 GIEELKKAISIAVKDKK 171 (188)
T ss_dssp SHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999887643
No 85
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=4e-22 Score=169.43 Aligned_cols=157 Identities=15% Similarity=0.177 Sum_probs=109.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|||||||+++|.+..+....+..+.+.. .+...+..+.+|||||+. .+..+ +..++
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~~ 83 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLSYKNLKLNVWDLGGQT--SIRPY-------WRCYY 83 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE----EEEETTEEEEEEEEC------CCTT-------GGGTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE----EEEECCEEEEEEECCCCH--hHHHH-------HHHHh
Confidence 566999999999999999999998877544555553322 233356899999999953 22222 33457
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHhc---CCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSAk~ 267 (363)
..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....+... ....+++++||++
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 163 (183)
T 1moz_A 84 ADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIK 163 (183)
T ss_dssp TTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGG
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCC
Confidence 8999999999998764 44455566555432 2678999999999997643333333332211 1234799999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 017937 268 GHGVEDIRDWILTKLP 283 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (363)
|.|+++++++|.+.+.
T Consensus 164 ~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 164 GEGITEGLDWLIDVIK 179 (183)
T ss_dssp TBTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999988763
No 86
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.88 E-value=4e-23 Score=178.88 Aligned_cols=163 Identities=22% Similarity=0.248 Sum_probs=107.2
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHHHHHHHH
Q 017937 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (363)
Q Consensus 111 ~~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~ 188 (363)
|..+..+|+++|.+|||||||+|+|++..+. .....++........ ......+.+|||||.. .+..+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~------- 88 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQD--EYSIL------- 88 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCC--TTCCC-------
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCcc--chHHH-------
Confidence 3346679999999999999999999998875 333334333333333 3456788999999953 33222
Q ss_pred HHhhccccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcc
Q 017937 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVS 264 (363)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vS 264 (363)
+..++..+|++++|+|+++.. .....|+..+.... ..+.|+++|+||+|+.....+. .....+....+ .+++++|
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~S 167 (201)
T 3oes_A 89 PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWG-ATFMESS 167 (201)
T ss_dssp CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECC
T ss_pred HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhC-CeEEEEe
Confidence 334578999999999998653 33344444443321 2478999999999997543221 11122222223 3899999
Q ss_pred cCCCCCHHHHHHHHHhhCCCC
Q 017937 265 AKYGHGVEDIRDWILTKLPLG 285 (363)
Q Consensus 265 Ak~g~gi~eL~~~i~~~l~~~ 285 (363)
|++|.|++++|++|.+.+...
T Consensus 168 a~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 168 ARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp TTCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999887543
No 87
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=8.1e-23 Score=175.41 Aligned_cols=160 Identities=13% Similarity=0.108 Sum_probs=110.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce-ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
...+|+++|.+|||||||+|+|++..+.. .....+.+..............+.+||||| ...+.. .+..+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~-------~~~~~ 92 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG--QERYRT-------ITTAY 92 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHH--HHHCHH-------HHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCC--hHHHHH-------HHHHH
Confidence 44589999999999999999999877532 223334445545555566778999999999 443332 24455
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
+..+|++++|+|+++.. .....|+.........+.|+++|+||+|+.....+ .+....+....+ .+++++||++|.
T Consensus 93 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 93 YRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLG-FDFFEASAKENI 171 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECBTTTTB
T ss_pred HccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CeEEEEECCCCC
Confidence 88999999999998643 33344444333322257999999999999643221 111222222223 389999999999
Q ss_pred CHHHHHHHHHhhCC
Q 017937 270 GVEDIRDWILTKLP 283 (363)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (363)
|+++++++|.+.+.
T Consensus 172 gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 172 SVRQAFERLVDAIC 185 (191)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988663
No 88
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.88 E-value=3.2e-22 Score=170.21 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=107.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 190 (363)
.+..+|+++|.+|||||||+|+|++..+. .....++.......+. .....+.+|||||. ..+..+ +.
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~ 84 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ--EDYAAI-------RD 84 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TCCHHH-------HH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECCEEEEEEEEECCCC--cccHHH-------HH
Confidence 35569999999999999999999988764 3344444433333333 33468999999995 333322 33
Q ss_pred hhccccceEEEEeeCCCCC--chHHHHHHHhccccC-CCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCcEEEccc
Q 017937 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSA 265 (363)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~-~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA 265 (363)
.++..+|++++|+|+++.. .....|+........ .+.|+++|+||+|+..... ..+....... .+ .+++++||
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa 162 (187)
T 2a9k_A 85 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-WN-VNYVETSA 162 (187)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEECCT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-cC-CeEEEeCC
Confidence 4577899999999998753 233333333332221 4799999999999965322 2223333333 23 48999999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 017937 266 KYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l~ 283 (363)
++|.|+++++++|.+.+.
T Consensus 163 ~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 163 KTRANVDKVFFDLMREIR 180 (187)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 89
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.88 E-value=5e-23 Score=174.71 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=99.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+++|.+..+. ....+++....... .......+.+|||||. ..+..+ +..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 75 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ--EDYNRL-------RPL 75 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC---CTTTTT-------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCeeeeeEEEEEEECCEEEEEEEEECCCC--hhhhhh-------HHh
Confidence 5569999999999999999999987753 23333332222111 2233456779999995 333322 334
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-----------HHHHHHHHhcCCCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-----------AKKLEWYEKFTDVD 258 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-----------~~~~~~~~~~~~~~ 258 (363)
++..+|++++|+|++++. ......+...+.....+.|+++|+||+|+...... ......+....+..
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 155 (182)
T 3bwd_D 76 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAP 155 (182)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCS
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCC
Confidence 578999999999998754 22222233333322247999999999999754432 11122233333445
Q ss_pred cEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 259 EVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 259 ~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
+++++||++|.|+++++++|.+.+.
T Consensus 156 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 156 AYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999998764
No 90
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.87 E-value=6.1e-22 Score=164.78 Aligned_cols=157 Identities=21% Similarity=0.194 Sum_probs=103.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
..+|+++|.+|||||||+|+|.+..+. .....++....... .......+.+|||||.. .+..+ +..+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--~~~~~-------~~~~ 71 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQE--EYSAM-------RDQY 71 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCS--SCCHH-------HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCch--hhhHH-------HHHh
Confidence 358999999999999999999987754 22333333332222 23334678999999953 33322 2334
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
+..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+............+....+ .+++++||++|.
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 150 (166)
T 2ce2_X 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYG-IPYIETSAKTRQ 150 (166)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-CCEEEECTTTCT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 67899999999998653 22233333322211 147999999999999753221222222222223 379999999999
Q ss_pred CHHHHHHHHHhhCC
Q 017937 270 GVEDIRDWILTKLP 283 (363)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (363)
|+++++++|.+.+.
T Consensus 151 gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 151 GVEDAFYTLVREIR 164 (166)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988753
No 91
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=2.5e-22 Score=168.45 Aligned_cols=159 Identities=21% Similarity=0.242 Sum_probs=101.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEE-EEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH-RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
..+|+++|.+|||||||+|+|++..+.. ...+..... ............+.+|||||+. .+..+ +..++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~--~~~~~-------~~~~~ 72 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRE-SYIPTVEDTYRQVISCDKSICTLQITDTTGSH--QFPAM-------QRLSI 72 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCS-SCCCCSCEEEEEEEEETTEEEEEEEEECCSCS--SCHHH-------HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCccccEEEEEEECCEEEEEEEEECCCch--hhHHH-------HHHhc
Confidence 3589999999999999999999877542 111111111 1112233344679999999953 33222 33446
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccc--cCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGD--HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~--~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
..+|++++|+|++++. .....++...... ...+.|+++|+||+|+...+.+. .....+....+ .+++++||++|
T Consensus 73 ~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~ 151 (172)
T 2erx_A 73 SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWK-CAFMETSAKLN 151 (172)
T ss_dssp HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-CEEEECBTTTT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhC-CeEEEecCCCC
Confidence 7899999999998653 2223333222221 11468999999999996543221 11112222222 47999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 017937 269 HGVEDIRDWILTKLPL 284 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (363)
.|+++++++|.+.+..
T Consensus 152 ~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 152 HNVKELFQELLNLEKR 167 (172)
T ss_dssp BSHHHHHHHHHHTCCS
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999998864
No 92
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.87 E-value=2.9e-22 Score=181.85 Aligned_cols=166 Identities=33% Similarity=0.358 Sum_probs=117.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|++|||||||+|+|++..+ .+...+++|.+.....+...+..+.+|||||+................ ...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNF-ILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHH-HHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHh-hhc
Confidence 345899999999999999999999887 578899999988888888888899999999975433222222221111 113
Q ss_pred cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHH
Q 017937 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~e 273 (363)
..+|++++|+|+++.. ....++...... ...|+++|+||+|+............+....+ .+++++||++|.|+++
T Consensus 80 ~~~d~vi~v~D~~~~~-~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~~~~~Sa~~g~gi~~ 155 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM-RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG-VPVIPTNAKKGEGVEE 155 (271)
T ss_dssp TCCSEEEEEEEGGGHH-HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS-SCEEECBGGGTBTHHH
T ss_pred cCCcEEEEEecCCcch-hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHHHHHHHHHcC-CcEEEEEeCCCCCHHH
Confidence 7899999999998752 222333333332 23999999999998643221111222222223 4899999999999999
Q ss_pred HHHHHHhhCCCC
Q 017937 274 IRDWILTKLPLG 285 (363)
Q Consensus 274 L~~~i~~~l~~~ 285 (363)
++++|.+.+...
T Consensus 156 l~~~i~~~~~~~ 167 (271)
T 3k53_A 156 LKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcc
Confidence 999999887543
No 93
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.87 E-value=1.5e-22 Score=176.50 Aligned_cols=161 Identities=20% Similarity=0.142 Sum_probs=108.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+++|.+..+. .....++.......+ ......+.+|||||+ ..+..+ +..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 76 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQ--EDYSRL-------RPL 76 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCSSCCCEEEEEECSSCEEEEEEECCCCC--CCCCC---------CG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceeEEEEEEECCEEEEEEEEECCCc--HHHHHH-------HHh
Confidence 5569999999999999999999987763 333334333333233 334468999999995 333322 234
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH---------HHHHHHHHhcCCCCcE
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI---------AKKLEWYEKFTDVDEV 260 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~---------~~~~~~~~~~~~~~~i 260 (363)
++..+|++|+|+|++++. ......+...+.....+.|+++|+||+|+...... ......+....+..++
T Consensus 77 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAY 156 (212)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEE
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceE
Confidence 588999999999998754 22221233333322247999999999999754331 1222223333344589
Q ss_pred EEcccCCCCCHHHHHHHHHhhCCCC
Q 017937 261 IPVSAKYGHGVEDIRDWILTKLPLG 285 (363)
Q Consensus 261 ~~vSAk~g~gi~eL~~~i~~~l~~~ 285 (363)
+++||++|.|+++++++|.+.+...
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 157 IECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred EEccCCCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999988653
No 94
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.87 E-value=6.9e-23 Score=174.27 Aligned_cols=157 Identities=13% Similarity=0.081 Sum_probs=84.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
..+|+++|.+|||||||+++|.+..+. ....+..+.+.....+..+ ...+.+|||||. ..+. ..+..+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~~~ 77 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFN-STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ--ERFR-------TITTAY 77 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC------------------CCTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEcCCCC--hhhh-------hhHHHH
Confidence 458999999999999999999987654 2223333433333333333 378999999994 3322 223455
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCcEEEcccCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
++.+|++++|+|++++. .....|+.........+.|+++|+||+|+..... ..+....... .+ .+++++||++|
T Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~~ 155 (183)
T 2fu5_C 78 YRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALD-YG-IKFMETSAKAN 155 (183)
T ss_dssp TTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH-HT-CEEEECCC---
T ss_pred HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHH-cC-CeEEEEeCCCC
Confidence 78999999999998753 3333444443332235789999999999975322 1222222222 23 48999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 017937 269 HGVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (363)
.|+++++++|.+.+.
T Consensus 156 ~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 156 INVENAFFTLARDIK 170 (183)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 95
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=1.9e-22 Score=196.34 Aligned_cols=169 Identities=20% Similarity=0.242 Sum_probs=123.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~--~~~~~~~~~~~~~ 191 (363)
...+|+++|.+|+|||||+|+|++.....++..+++|++.....+...+..+.+|||||+..... .............
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 273 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 273 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHH
Confidence 45699999999999999999999988777889999999887777777788999999999643110 0011222223345
Q ss_pred hccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh--HHHHHHHHHHhc---CCCCcEEEcccC
Q 017937 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKF---TDVDEVIPVSAK 266 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~~~~---~~~~~i~~vSAk 266 (363)
++..+|++|+|+|++++....+.++...+.. .++|+++|+||+|+.+.+ ...+..+.+... .+..+++++||+
T Consensus 274 ~~~~ad~~llviD~~~~~~~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 351 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSAL 351 (456)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTT
T ss_pred HHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCC
Confidence 6789999999999999888888877777766 679999999999997532 223333333332 235689999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 017937 267 YGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (363)
+|.|+++++++|.+.+..
T Consensus 352 ~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 352 TKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp TCTTGGGHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999987754
No 96
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.87 E-value=3.1e-22 Score=169.55 Aligned_cols=159 Identities=21% Similarity=0.194 Sum_probs=101.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe---CCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 190 (363)
+..+|+++|.+|||||||+++|++..+.. ...+..+.+.....+. .....+.+|||||. ..+. ..+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~ 76 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ--ERFQ-------SLGV 76 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCC--hHhh-------hhhH
Confidence 45699999999999999999999877642 2222222222233333 33468999999994 3322 2345
Q ss_pred hhccccceEEEEeeCCCCC--chHHHHHHHhcccc----CCCCCEEEEEcCCCCCChhH---HHHHHHHHHhcCCCCcEE
Q 017937 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVI 261 (363)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~----~~~~piilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~i~ 261 (363)
.++..+|++++|+|++++. .....|+....... ..+.|+++|+||+|+..... ..+. ..+.......+++
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~-~~~~~~~~~~~~~ 155 (182)
T 1ky3_A 77 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSA-QELAKSLGDIPLF 155 (182)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHH-HHHHHHTTSCCEE
T ss_pred HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHH-HHHHHhcCCCeEE
Confidence 5688999999999998754 23333433332221 15789999999999964321 2222 2233323345899
Q ss_pred EcccCCCCCHHHHHHHHHhhCC
Q 017937 262 PVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 262 ~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
++||++|.|+++++++|.+.+.
T Consensus 156 ~~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 156 LTSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp EEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 97
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=3.1e-22 Score=172.96 Aligned_cols=160 Identities=19% Similarity=0.185 Sum_probs=101.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce-ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
+..+|+++|.+|||||||+|+|++..+.. .....+.+.......+......+.+|||||. ..+.. .+..+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~ 97 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ--ERFRS-------IAKSY 97 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTC--TTCHH-------HHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCC--cchhh-------hHHHH
Confidence 45699999999999999999999887542 2233333333333334444578999999995 33322 23445
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChh------HH-HHHHHHHHhcCCCCcEEEc
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG------EI-AKKLEWYEKFTDVDEVIPV 263 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~------~~-~~~~~~~~~~~~~~~i~~v 263 (363)
+..+|++|+|+|++++. .....|+.........+.|+++|+||+|+.... .+ .+....+....+ .+++++
T Consensus 98 ~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~ 176 (199)
T 2p5s_A 98 FRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG-ALFCET 176 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-CEEEEC
T ss_pred HhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC-CeEEEe
Confidence 77899999999998753 233334333322222578999999999985321 11 111122222223 389999
Q ss_pred ccCCCCCHHHHHHHHHhhCC
Q 017937 264 SAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 264 SAk~g~gi~eL~~~i~~~l~ 283 (363)
||++|.|+++++++|.+.+.
T Consensus 177 SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 177 SAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998775
No 98
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.87 E-value=1.2e-22 Score=184.15 Aligned_cols=162 Identities=22% Similarity=0.266 Sum_probs=112.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 194 (363)
..+|+++|.+|||||||+|+|++.... ++.++++|.....+.+.. +..+.+|||||+.........+.+...+.. ..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~-~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLL-SQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHH-TT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHh-cC
Confidence 358999999999999999999997643 678899998877777776 789999999996443221122222111111 14
Q ss_pred ccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHH
Q 017937 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL 274 (363)
.+|++++|+|+++.. ....+... +.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|++++
T Consensus 80 ~~d~vi~V~D~t~~e-~~~~~~~~-l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~vi~~SA~~g~gi~el 154 (272)
T 3b1v_A 80 RADSILNVVDATNLE-RNLYLTTQ-LIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG-VPVVATSALKQTGVDQV 154 (272)
T ss_dssp CCSEEEEEEEGGGHH-HHHHHHHH-HHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBTTTTBSHHHH
T ss_pred CCCEEEEEecCCchH-hHHHHHHH-HHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC-CCEEEEEccCCCCHHHH
Confidence 799999999998642 22233332 333 57999999999998543211111122222223 48999999999999999
Q ss_pred HHHHHhhCCC
Q 017937 275 RDWILTKLPL 284 (363)
Q Consensus 275 ~~~i~~~l~~ 284 (363)
+++|.+.+..
T Consensus 155 ~~~i~~~~~~ 164 (272)
T 3b1v_A 155 VKKAAHTTTS 164 (272)
T ss_dssp HHHHHHSCTT
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 99
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.87 E-value=1.8e-22 Score=174.71 Aligned_cols=158 Identities=19% Similarity=0.185 Sum_probs=101.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.......+ ......+.+|||||. ..+..+ +..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~ 93 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQ-DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ--ERFRSV-------TRS 93 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTH--HHHSCC-------CHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCcccceeEEEEEEECCeeeEEEEEcCCCc--HhHHHH-------HHH
Confidence 44589999999999999999999887653 222222222222222 233478999999994 333332 334
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH--HHHHHHHHhcCCCCcEEEcccCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
+++.+|++|+|+|++++. .....|+.........+.|+++|+||+|+.....+ .+....... .+ .+++++||++
T Consensus 94 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~SA~~ 171 (200)
T 2o52_A 94 YYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQE-NE-LMFLETSALT 171 (200)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEEECTTT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHH-cC-CEEEEEeCCC
Confidence 478999999999998754 33344444433322357899999999999643222 222222222 23 4899999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 017937 268 GHGVEDIRDWILTKLP 283 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (363)
|.|+++++++|.+.+.
T Consensus 172 g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 172 GENVEEAFLKCARTIL 187 (200)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 100
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.87 E-value=4.2e-22 Score=170.49 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=110.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|||||||+|+|.+..+....++.+.+ ...+...+..+.+|||||+. .+..+ +..++
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~Dt~G~~--~~~~~-------~~~~~ 87 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN----LETLQYKNISFEVWDLGGQT--GVRPY-------WRCYF 87 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC----EEEEEETTEEEEEEEECCSS--SSCCC-------CSSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE----EEEEEECCEEEEEEECCCCH--hHHHH-------HHHHh
Confidence 4569999999999999999999987765433333322 22233457899999999953 22222 23457
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSAk~ 267 (363)
+.+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....... .....+++++||++
T Consensus 88 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (189)
T 2x77_A 88 SDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKT 167 (189)
T ss_dssp TTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 8999999999998764 44455565554432 257899999999999865333333333221 11234799999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 017937 268 GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (363)
|.|+++++++|.+.+..
T Consensus 168 ~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 168 GDGLVEGMDWLVERLRE 184 (189)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHh
Confidence 99999999999987753
No 101
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.87 E-value=1.8e-22 Score=174.46 Aligned_cols=160 Identities=18% Similarity=0.173 Sum_probs=102.3
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 190 (363)
.+..+|+++|.+|||||||+++|++..+. .....++.......+...+ ..+.+|||||. ..+..+ +.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~ 86 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYP--TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQ--DEFDKL-------RP 86 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCS--TTCSSS-------GG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCC--HHHHHH-------hH
Confidence 35669999999999999999999988753 4444555444443443333 57789999995 333322 23
Q ss_pred hhccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-------------HHHHHHHHhcC
Q 017937 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AKKLEWYEKFT 255 (363)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-------------~~~~~~~~~~~ 255 (363)
.++..+|++++|+|++++. ......+...+.....+.|+++|+||+|+...... .+....+....
T Consensus 87 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 166 (201)
T 2q3h_A 87 LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI 166 (201)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc
Confidence 4578999999999998754 22221222222222247999999999999743210 11122222223
Q ss_pred CCCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 256 DVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 256 ~~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
+..++++|||++|.|+++++++|.+.+.
T Consensus 167 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 167 KAASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 4458999999999999999999988764
No 102
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.87 E-value=3.9e-22 Score=172.74 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=108.1
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 190 (363)
.+..+|+++|.+|||||||+|+|.+..+. ....+++.......+. .....+.+|||||. ..+..+ +.
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~ 80 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ--EDYAAI-------RD 80 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC--TTCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TCCHHH-------HH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEcCCCh--hhhHHH-------HH
Confidence 45569999999999999999999988753 3444444443333333 33458999999995 333322 33
Q ss_pred hhccccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCcEEEccc
Q 017937 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSA 265 (363)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA 265 (363)
.++..+|++++|+|+++.. .....|+....... ..+.|+++|+||+|+..... ..+........ + .+++++||
T Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa 158 (206)
T 2bov_A 81 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW-N-VNYVETSA 158 (206)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-T-CEEEEECT
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHh-C-CeEEEEeC
Confidence 4477899999999998753 23334443333321 14799999999999975332 22223333322 2 37999999
Q ss_pred CCCCCHHHHHHHHHhhCC
Q 017937 266 KYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l~ 283 (363)
++|.|+++++++|.+.+.
T Consensus 159 ~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 159 KTRANVDKVFFDLMREIR 176 (206)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998774
No 103
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.87 E-value=9.5e-22 Score=169.55 Aligned_cols=166 Identities=11% Similarity=0.021 Sum_probs=103.9
Q ss_pred CCCCCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEE-eCCCeeEEEEeCCCCchhhhhhHHHHHHHH
Q 017937 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (363)
Q Consensus 110 ~~~~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~ 188 (363)
.+..+..+|+++|.+|||||||++++.+......+.....+.......+ ......+.+|||||. ..+..+.. .
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~----~ 88 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ--MDFFDPTF----D 88 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSS--CCTTCTTC----C
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCC--HHHHhhhh----h
Confidence 3445667999999999999999999888543322222222222222222 356689999999995 33322210 0
Q ss_pred HHhhccccceEEEEeeCCCCCchHHHHHHHhccc---cCCCCCEEEEEcCCCCCChhHH-------HH-HHHHHHhc---
Q 017937 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGEI-------AK-KLEWYEKF--- 254 (363)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~---~~~~~piilV~NK~Dl~~~~~~-------~~-~~~~~~~~--- 254 (363)
...+++.+|++|+|+|++++.......+..++.. ...+.|+++|+||+|+.+.... .. ....+...
T Consensus 89 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 89 YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE 168 (196)
T ss_dssp HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence 0234678999999999998643333333333222 2358999999999999864321 11 11222221
Q ss_pred CCCCcEEEcccCCCCCHHHHHHHHHhhC
Q 017937 255 TDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 255 ~~~~~i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
....++++|||++ .||+++|+.|.+.+
T Consensus 169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 2235899999999 99999999998765
No 104
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.87 E-value=3.6e-22 Score=172.89 Aligned_cols=159 Identities=13% Similarity=0.119 Sum_probs=107.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccccee-cCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
..+|+++|.+|||||||+|+|++..+... ....+.+..............+.+|||||+ ..+. ..+..++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~~~~ 78 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGL--ERYR-------TITTAYY 78 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGH-------HHHHTTG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCc--hhhc-------chHHHhh
Confidence 45899999999999999999999876422 222333333333333444578999999995 3322 2345668
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCCCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~g~g 270 (363)
..+|++|+|+|++++. .....|+.........+.|+++|+||+|+.....+ .+....+....+ .+++++||++|.|
T Consensus 79 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 157 (203)
T 1zbd_A 79 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG-FEFFEASAKDNIN 157 (203)
T ss_dssp GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCC-CeEEEEECCCCCC
Confidence 8999999999998753 22333443333222257899999999999753321 111122222223 3899999999999
Q ss_pred HHHHHHHHHhhCC
Q 017937 271 VEDIRDWILTKLP 283 (363)
Q Consensus 271 i~eL~~~i~~~l~ 283 (363)
+++++++|.+.+.
T Consensus 158 i~~l~~~l~~~i~ 170 (203)
T 1zbd_A 158 VKQTFERLVDVIC 170 (203)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987664
No 105
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=7.2e-22 Score=170.10 Aligned_cols=160 Identities=19% Similarity=0.205 Sum_probs=103.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceE-EEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
+..+|+++|.+|||||||+|+|.+..+.. ...+.... .............+.+|||||. ..+..+ +..+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~ 76 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD-TYIPTIEDTYRQVISCDKSVCTLQITDTTGS--HQFPAM-------QRLS 76 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC-TTSCCCCEEEEEEEEETTEEEEEEEEECCGG--GSCHHH-------HHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC-cccCccccceeEEEEECCEEEEEEEEeCCCh--HHhHHH-------HHHh
Confidence 45699999999999999999999877642 11111111 1111223334568999999994 333322 3344
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhcc--ccCCCCCEEEEEcCCCCCChhH-HHHHHHHHHhcCCCCcEEEcccCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVG--DHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~--~~~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
+..+|++++|+|++++. .....++..+.. ....+.|+++|+||+|+..... .......... .+ .+++++||++
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~ 154 (199)
T 2gf0_A 77 ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQE-WK-CAFMETSAKM 154 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHH-HT-CEEEECBTTT
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHH-hC-CeEEEEecCC
Confidence 67899999999998643 222233322211 1114689999999999975321 1122222222 22 3799999999
Q ss_pred CCCHHHHHHHHHhhCCCC
Q 017937 268 GHGVEDIRDWILTKLPLG 285 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~~ 285 (363)
|.|+++++++|.+.+...
T Consensus 155 ~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 155 NYNVKELFQELLTLETRR 172 (199)
T ss_dssp TBSHHHHHHHHHHHCSSS
T ss_pred CCCHHHHHHHHHHHHhhh
Confidence 999999999999988654
No 106
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.87 E-value=6.7e-22 Score=169.26 Aligned_cols=158 Identities=21% Similarity=0.176 Sum_probs=101.7
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHH
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 190 (363)
++..+|+++|.+|||||||+|+|++..+. .....++.......+. .....+.+|||||. ..+. ..+.
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~ 87 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYS-------AMRD 87 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCCh--HHHH-------HHHH
Confidence 45569999999999999999999987754 3333444433333333 33467999999994 3222 2234
Q ss_pred hhccccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhH-HHHHHHHHHhcCCCCcEEEcccC
Q 017937 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAK 266 (363)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSAk 266 (363)
.++..+|++++|+|+++.. .....|+....... ..+.|+++|+||+|+..... ..+....... .+ .+++++||+
T Consensus 88 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~ 165 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS-YG-IPFIETSAK 165 (190)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-HT-CCEEECCTT
T ss_pred HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH-cC-CeEEEEeCC
Confidence 5588999999999998754 22333333222211 14789999999999975221 1222222222 23 379999999
Q ss_pred CCCCHHHHHHHHHhhCC
Q 017937 267 YGHGVEDIRDWILTKLP 283 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l~ 283 (363)
+|.|+++++++|.+.+.
T Consensus 166 ~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 166 TRQGVEDAFYTLVREIR 182 (190)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999988764
No 107
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.87 E-value=5.8e-22 Score=171.57 Aligned_cols=159 Identities=20% Similarity=0.186 Sum_probs=105.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEE-EEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
...+|+++|.+|||||||+++|.+..+.. ...+.++.... ...+......+.+|||||. ..+..+ ...+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~ 93 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYIADIEVDGKQVELALWDTAGQ--EDYDRL-------RPLS 93 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS-SCCCSSCCCCEEEEEETTEEEEEEEECCCCS--GGGTTT-------GGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCc--hhHHHH-------HHHh
Confidence 34589999999999999999999887642 22222222221 1222333468999999995 333322 2345
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHH-------------HHHHHHhcCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTDV 257 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-------------~~~~~~~~~~~ 257 (363)
+..+|++++|+|++++. ......+...+.....+.|+++|+||+|+.......+ ....+....+.
T Consensus 94 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 173 (201)
T 2gco_A 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA 173 (201)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTC
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCC
Confidence 78999999999998743 2232233333333235799999999999976532211 11222223344
Q ss_pred CcEEEcccCCCCCHHHHHHHHHhhC
Q 017937 258 DEVIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 258 ~~i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
.+++++||++|.|+++++++|.+.+
T Consensus 174 ~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 174 FGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999998764
No 108
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.87 E-value=4.1e-22 Score=166.56 Aligned_cols=157 Identities=18% Similarity=0.204 Sum_probs=104.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+|+|.+..+.. ...+..+.+.... .+......+.+|||||. ..+..+ +..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 73 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ--EEFDAI-------TKA 73 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC-CSSCCCSSSEEEEEEEETTEEEEEEEECCTTG--GGTTCC-------CHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceEEEEEEEEEEECCEEEEEEEEcCCCc--HhHHHH-------HHH
Confidence 45689999999999999999999877642 2222222222222 23333568999999994 333333 233
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCcEEEcccCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
++..+|++++|+|++++. .....++....... .+.|+++|+||+|+...+. ..+....... .+ .+++++||++
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~ 150 (168)
T 1z2a_A 74 YYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKR-LK-LRFYRTSVKE 150 (168)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHH-HT-CEEEECBTTT
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHH-cC-CeEEEEecCC
Confidence 478999999999998753 33334443333222 5789999999999975322 1222222222 23 3899999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 017937 268 GHGVEDIRDWILTKLP 283 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (363)
|.|+++++++|.+.+.
T Consensus 151 ~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 151 DLNVSEVFKYLAEKHL 166 (168)
T ss_dssp TBSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987653
No 109
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.87 E-value=1.2e-22 Score=170.39 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=103.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+|+|++..+.. ...+..+....... +......+.+|||||. ..+. .....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~-------~~~~~ 74 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND-KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ--ERFH-------ALGPI 74 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS-SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC----------------CC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc-CCCCccceEEEEEEEEECCEEEEEEEEECCCc--Hhhh-------hhHHH
Confidence 34589999999999999999999877642 22233333332223 3334568899999994 3222 22344
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCcEEEcccCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
++..+|++++|+|++++. .....|+.........+.|+++|+||+|+.+.+. ..+....... .+ .+++++||++
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~ 152 (170)
T 1z08_A 75 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES-VG-AKHYHTSAKQ 152 (170)
T ss_dssp SSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH-TT-CEEEEEBTTT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHH-cC-CeEEEecCCC
Confidence 578999999999998754 2333343333222225689999999999975322 1222222222 33 4899999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 017937 268 GHGVEDIRDWILTKLP 283 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (363)
|.|+++++++|.+.+.
T Consensus 153 ~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 153 NKGIEELFLDLCKRMI 168 (170)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988764
No 110
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.87 E-value=4.5e-22 Score=171.66 Aligned_cols=160 Identities=19% Similarity=0.210 Sum_probs=106.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
...+|+++|.+|||||||+++|.+..... ...+.++.+..... +......+.+|||||.. .+.. . ....
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~--~~~~---~---~~~~ 92 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG--DAGG---W---LRDH 92 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCS--GGGH---H---HHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCc--cchh---h---hHHH
Confidence 45699999999999999999998755432 23333333332222 33445678999999953 2221 0 1223
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccC-CCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCcEEEcccC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAK 266 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~-~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSAk 266 (363)
++..+|++|+|+|+++.. .....|+........ .+.|+++|+||+|+...+. ..+... +....+ .+++++||+
T Consensus 93 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~a~~~~-~~~~e~Sa~ 170 (195)
T 3cbq_A 93 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-LAGTLS-CKHIETSAA 170 (195)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHH-HHHHTT-CEEEEEBTT
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHH-HHHHhC-CEEEEEcCC
Confidence 467899999999998753 344455554433211 4799999999999975432 222222 222233 489999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 017937 267 YGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (363)
+|.|++++|++|.+.+..
T Consensus 171 ~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 171 LHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp TTBSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987754
No 111
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.87 E-value=4.3e-22 Score=166.85 Aligned_cols=158 Identities=19% Similarity=0.184 Sum_probs=98.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
.+|+++|.+|||||||+++|.+..+......+ .+.+..... +......+.+|||||.. .+... ....++
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~--~~~~~------~~~~~~ 73 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEME-NSEDTYERRIMVDKEEVTLIVYDIWEQG--DAGGW------LQDHCL 73 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC----------------CHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCC-CcCCeeeEEEEECCeEEEEEEEECCCcc--ccchh------hhhhhh
Confidence 48999999999999999999976654332222 223322222 33445788899999953 22210 112235
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhccccC-CCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~-~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
..+|++++|+|++++. .....|+........ .+.|+++|+||+|+.+...+ .+....+....+ .+++++||++|.
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 152 (169)
T 3q85_A 74 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLS-CKHIETSAALHH 152 (169)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTTTB
T ss_pred ccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcC-CcEEEecCccCC
Confidence 6799999999998743 344455555444321 37999999999999743321 112222333333 389999999999
Q ss_pred CHHHHHHHHHhhCC
Q 017937 270 GVEDIRDWILTKLP 283 (363)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (363)
|+++++++|.+.+.
T Consensus 153 ~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 153 NTRELFEGAVRQIR 166 (169)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
No 112
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.87 E-value=1.6e-21 Score=166.93 Aligned_cols=158 Identities=17% Similarity=0.143 Sum_probs=105.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEE-EEEEeCC-----------CeeEEEEeCCCCchhhhhhH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-LGICSGP-----------EYQMILYDTPGIIEKKIHML 181 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~-~~~~~~~-----------~~~i~l~DtpG~~~~~~~~~ 181 (363)
+..+|+++|.+|||||||+|+|.+..+.. ...+....+.. ...+... ...+.+|||||+ ..+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-- 84 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL--ERFR-- 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCS--GGGH--
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCc-CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCc--HHHH--
Confidence 45699999999999999999999877642 22222222222 2222222 468999999995 3322
Q ss_pred HHHHHHHHHhhccccceEEEEeeCCCCC--chHHHHHHHhccccC-CCCCEEEEEcCCCCCChhHH--HHHHHHHHhcCC
Q 017937 182 DSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTD 256 (363)
Q Consensus 182 ~~~~~~~~~~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~-~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~ 256 (363)
..+..++..+|++++|+|++++. .....++........ .+.|+++|+||+|+.....+ ......... .+
T Consensus 85 -----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~ 158 (195)
T 3bc1_A 85 -----SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK-YG 158 (195)
T ss_dssp -----HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH-HT
T ss_pred -----HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-cC
Confidence 23456689999999999998754 223334433332221 57899999999999753221 222222222 23
Q ss_pred CCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 257 ~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
.+++++||++|.|+++++++|.+.+.
T Consensus 159 -~~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 159 -IPYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp -CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 37999999999999999999988764
No 113
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=5.6e-22 Score=172.49 Aligned_cols=160 Identities=20% Similarity=0.179 Sum_probs=104.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+|+|.+..+.. ....++...... ........+.+|||||.. .+..+ +..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~ 92 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQE--DYDRL-------RPL 92 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCT--TCTTT-------GGG
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCC--cCCCcccceEEEEEEECCEEEEEEEEECCCcH--HHHHH-------HHh
Confidence 44589999999999999999999987652 222222222212 223334689999999953 33222 234
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHH-------------HHHHHhcCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-------------LEWYEKFTD 256 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~-------------~~~~~~~~~ 256 (363)
++..+|++++|+|++++. ......+...+.....+.|+++|+||+|+.......+. ...+....+
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 172 (207)
T 2fv8_A 93 SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ 172 (207)
T ss_dssp GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcC
Confidence 578999999999998743 23322333333332357999999999999754332211 112222234
Q ss_pred CCcEEEcccCCCCCHHHHHHHHHhhCCC
Q 017937 257 VDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 257 ~~~i~~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
..+++++||++|.|+++++++|.+.+..
T Consensus 173 ~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 173 AYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred CCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 4489999999999999999999987653
No 114
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.87 E-value=7.6e-22 Score=172.72 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=104.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEE--EEEeCC----------CeeEEEEeCCCCchhhhhhH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGP----------EYQMILYDTPGIIEKKIHML 181 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~--~~~~~~----------~~~i~l~DtpG~~~~~~~~~ 181 (363)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.+... ..+... ...+.+||||| ...+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G--~~~~~-- 98 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAG--QERFR-- 98 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCC-EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEES--HHHHH--
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCc-CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCC--cHhHH--
Confidence 45689999999999999999999877631 111111112111 122222 57899999999 33332
Q ss_pred HHHHHHHHHhhccccceEEEEeeCCCCC--chHHHHHHHhccccC-CCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCC
Q 017937 182 DSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDV 257 (363)
Q Consensus 182 ~~~~~~~~~~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~-~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~ 257 (363)
..+..++..+|++|+|+|+++.. .....|+........ .+.|+++|+||+|+.....+ ......+....+
T Consensus 99 -----~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~- 172 (217)
T 2f7s_A 99 -----SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYG- 172 (217)
T ss_dssp -----HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-
T ss_pred -----hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCC-
Confidence 33455688999999999998753 223333333322211 57899999999999753322 112222222233
Q ss_pred CcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 258 DEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 258 ~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
.+++++||++|.|+++++++|.+.+.
T Consensus 173 ~~~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 173 IPYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp CCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999988764
No 115
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.87 E-value=5.9e-22 Score=171.98 Aligned_cols=159 Identities=17% Similarity=0.132 Sum_probs=106.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+++|.+..+.. ...+..+....... +......+.+|||||. ..+..+ +..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 76 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ--ERFRTI-------TSS 76 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETTEEEEEEEECCTTT--TTTTCC-------CGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEeCCCh--HHHHHH-------HHH
Confidence 34589999999999999999999887642 22333333322222 3333468999999995 333322 334
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
++..+|++|+|+|++++. .....|+.........+.|+++|+||+|+...+.+ .+....+....+ .+++++||++|
T Consensus 77 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 155 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANK-MPFLETSALDS 155 (206)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CCEEECCTTTC
T ss_pred hccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 578999999999998754 33333443333222357899999999999764321 111222222233 48999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 017937 269 HGVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (363)
.|+++++++|.+.+.
T Consensus 156 ~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 156 TNVEDAFLTMARQIK 170 (206)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998774
No 116
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.1e-21 Score=169.07 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=104.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|||||||+++|++..+.........+.......+......+.+|||||... .. .+..++
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---~~-------~~~~~~ 96 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED---TI-------QREGHM 96 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC---CH-------HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc---cc-------chhhhh
Confidence 45699999999999999999999987643222111122222223344457899999999643 21 233446
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHH--HHHHHHHHhcCCCCcEEEcccCCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
..+|++++|+|++++. .....|+....... ..+.|+++|+||+|+...+.+ .+........ + .+++++||++|
T Consensus 97 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~g 174 (196)
T 2atv_A 97 RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL-A-CAFYECSACTG 174 (196)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-T-SEEEECCTTTC
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHh-C-CeEEEECCCcC
Confidence 7899999999998743 23333333332211 257899999999999653221 2222222222 2 48999999999
Q ss_pred C-CHHHHHHHHHhhCC
Q 017937 269 H-GVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~-gi~eL~~~i~~~l~ 283 (363)
. |+++++++|.+.+.
T Consensus 175 ~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 175 EGNITEIFYELCREVR 190 (196)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9 99999999987763
No 117
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=5.9e-22 Score=173.00 Aligned_cols=161 Identities=22% Similarity=0.222 Sum_probs=102.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
...+|+++|.+|||||||+|+|++.........+.++.+.... .+......+.+|||+|.... .. + ....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~-~~-----~--l~~~ 107 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE-NE-----W--LHDH 107 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH-HH-----H--HHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch-hh-----h--HHHH
Confidence 3458999999999999999999976543333333332222222 23333457789999995321 11 1 1234
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccc-cCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
+++.+|++|+|+|+++.. .....|+..+.+. ...++|+++|+||+|+...+.+. +....+....+ .++++|||++
T Consensus 108 ~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~-~~~~e~SAk~ 186 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFD-CKFIETSAAV 186 (211)
T ss_dssp CCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcC-CEEEEEeCCC
Confidence 578899999999998743 3344444333321 12479999999999996432221 11112222222 4799999999
Q ss_pred CCCHHHHHHHHHhhCC
Q 017937 268 GHGVEDIRDWILTKLP 283 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (363)
|.||+++|++|.+.+.
T Consensus 187 g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 187 QHNVKELFEGIVRQVR 202 (211)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988663
No 118
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=181.60 Aligned_cols=158 Identities=19% Similarity=0.196 Sum_probs=111.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+|+|.+|||||||+++|.+..+... .+ |.......+...+..+.+||||| +..+..+ +..++
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~--~p--T~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~~ 230 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGG--QDKIRPL-------WRHYF 230 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE--EE--ETTEEEEEEEETTEEEEEEECC-------CCS-------HHHHH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc--cc--ccceEEEEEecCcEEEEEEECCC--CHhHHHH-------HHHHh
Confidence 556999999999999999999998876432 22 33333445566789999999999 4444433 33447
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHhc---CCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSAk~ 267 (363)
..+|++|+|+|+++.. .....++...+... ..++|+++|+||+|+.......+....+... ....+++++||++
T Consensus 231 ~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~ 310 (329)
T 3o47_A 231 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATS 310 (329)
T ss_dssp TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTT
T ss_pred ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCC
Confidence 8999999999997654 44555565555442 2479999999999998654444444433221 1234799999999
Q ss_pred CCCHHHHHHHHHhhCCC
Q 017937 268 GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (363)
|.||++++++|.+.+..
T Consensus 311 g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 311 GDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TBTHHHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999988754
No 119
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5e-22 Score=198.89 Aligned_cols=204 Identities=18% Similarity=0.138 Sum_probs=129.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecC------------------------------CCCceEEEEEEEEeCCCe
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN------------------------------KPQTTRHRILGICSGPEY 163 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~~ 163 (363)
...+|+++|++|+|||||+|+|++........ .+++|.+.....+...+.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 45699999999999999999999764332111 256777766666777889
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCC-------CchHHHHHHHhccccCCC-CCEEEEEcC
Q 017937 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDK-LPILLVLNK 235 (363)
Q Consensus 164 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~-------~~~~~~~~~~~~~~~~~~-~piilV~NK 235 (363)
++.||||||+.. +...+..++..+|++|+|+|++++ ...+.......+.. .+ .|+|+|+||
T Consensus 246 ~~~iiDTPG~e~---------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~--lgi~~iIVVvNK 314 (611)
T 3izq_1 246 NFTIVDAPGHRD---------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNK 314 (611)
T ss_dssp EEEEEECCSSSC---------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT--TTCCEEEEEEEC
T ss_pred eEEEEECCCCcc---------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH--cCCCeEEEEEec
Confidence 999999999632 345566778999999999999864 12333444444433 34 459999999
Q ss_pred CCCCCh--hHHHHHH----HHHHhcC---CCCcEEEcccCCCCCHHHH---------------HHHHHhhCCCCCCCCCC
Q 017937 236 KDLIKP--GEIAKKL----EWYEKFT---DVDEVIPVSAKYGHGVEDI---------------RDWILTKLPLGPAYYPK 291 (363)
Q Consensus 236 ~Dl~~~--~~~~~~~----~~~~~~~---~~~~i~~vSAk~g~gi~eL---------------~~~i~~~l~~~~~~~~~ 291 (363)
+|+... ....+.. ..+.... ...+++++||++|.|+.++ ++.| ..+......+++
T Consensus 315 iDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L-~~l~~~~p~~~p 393 (611)
T 3izq_1 315 MDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTL-ENAAFKISKENE 393 (611)
T ss_dssp TTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHH-TTSCCCCCCSSS
T ss_pred ccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHH-HHHhhcccccCc
Confidence 999862 2222222 2222211 1358999999999999865 3333 333322222223
Q ss_pred CCCCCchHHHHHHHHHHHHHHhhccC----CCCCceEEEEEEEEecCCCe
Q 017937 292 DIVSEHPERFFVGEIIREKIFMQYRN----EVPYACQVNVVSYKTRPTAK 337 (363)
Q Consensus 292 ~~~~~~~~~~~~~eiire~i~~~~~~----evp~s~~i~~~~~~~~~~~~ 337 (363)
...++.|.++.+.+++ +. ..|-.....+..+....+..
T Consensus 394 ~~~~~~p~r~~V~~v~--------~~~~~~g~g~v~~G~V~~G~lk~Gd~ 435 (611)
T 3izq_1 394 GINKDDPFLFSVLEII--------PSKKTSNDLALVSGKLESGSIQPGES 435 (611)
T ss_dssp CCSCCSCCEEECCEEE--------CCSSSCSSSSEEEEEEEESEECTTCE
T ss_pred ccccccchhhheeeee--------ccCccCCCeeEEEEEEEeceeccCCE
Confidence 3345666665443322 22 24445666777877775533
No 120
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.86 E-value=4.6e-22 Score=170.85 Aligned_cols=159 Identities=19% Similarity=0.117 Sum_probs=103.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecC-------CCCceEEEEEE-----EEeCCCeeEEEEeCCCCchhhhhhH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILG-----ICSGPEYQMILYDTPGIIEKKIHML 181 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~-------~~~~t~~~~~~-----~~~~~~~~i~l~DtpG~~~~~~~~~ 181 (363)
+..+|+++|.+|||||||++.+.+........ ....|...... ........+.+|||||. ..+..+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~ 90 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQ--VFYNAS 90 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSC--CSCSHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCCh--HHHHHH
Confidence 44589999999999999998777654322111 01112211111 22334568999999995 333333
Q ss_pred HHHHHHHHHhhccccceEEEEeeCCCCC--------chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHh
Q 017937 182 DSMMMKNVRSAGINADCIVVLVDACKAP--------ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK 253 (363)
Q Consensus 182 ~~~~~~~~~~~~~~ad~ii~VvD~~~~~--------~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~ 253 (363)
+..+++.+|++|+|+|++++. .....|+... +....+.|+++|+||+|+.......+......
T Consensus 91 -------~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~-~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~- 161 (198)
T 3t1o_A 91 -------RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY-GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVD- 161 (198)
T ss_dssp -------HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT-TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHC-
T ss_pred -------HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh-ccccCCCCEEEEEEchhcccccCHHHHHHHHH-
Confidence 334589999999999998542 1122223222 22236799999999999976543344333333
Q ss_pred cCCCCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 254 FTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 254 ~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
..+..+++++||++|.|+++++++|.+.+.
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 162 PEGKFPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp TTCCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred hcCCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 334448999999999999999999987663
No 121
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.86 E-value=2.2e-22 Score=192.46 Aligned_cols=164 Identities=28% Similarity=0.404 Sum_probs=113.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCe-eEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
...+|+++|++|+|||||+|+|++..+..++..+++|.+.....+...+. .+.+|||||+.. +..+.......+..+
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d--~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD--VGELGRLRVEKARRV 110 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTC--CCTTCCCCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCc--ccchhHHHHHHHHHH
Confidence 45699999999999999999999998876788888888766665554444 899999999643 333322223445667
Q ss_pred ccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHH
Q 017937 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~ 272 (363)
+..+|++|+|+|+ +.......+...+.. .+.|+++|+||+|+...... +....+....+ .+++++||++|.|++
T Consensus 111 l~~aD~vllVvD~--~~~~~~~~~l~~l~~--~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g-~~v~~vSAktg~gI~ 184 (423)
T 3qq5_A 111 FYRADCGILVTDS--APTPYEDDVVNLFKE--MEIPFVVVVNKIDVLGEKAE-ELKGLYESRYE-AKVLLVSALQKKGFD 184 (423)
T ss_dssp HTSCSEEEEECSS--SCCHHHHHHHHHHHH--TTCCEEEECCCCTTTTCCCT-HHHHHSSCCTT-CCCCCCSSCCTTSTT
T ss_pred HhcCCEEEEEEeC--CChHHHHHHHHHHHh--cCCCEEEEEeCcCCCCccHH-HHHHHHHHHcC-CCEEEEECCCCCCHH
Confidence 8899999999999 344455555555555 58999999999999865543 23344444334 489999999999999
Q ss_pred HHHHHHHhhCCCC
Q 017937 273 DIRDWILTKLPLG 285 (363)
Q Consensus 273 eL~~~i~~~l~~~ 285 (363)
+++++|.+.++..
T Consensus 185 eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 185 DIGKTISEILPGD 197 (423)
T ss_dssp THHHHHHHHSCCC
T ss_pred HHHHHHHHhhhhh
Confidence 9999999999654
No 122
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.86 E-value=4.3e-22 Score=169.82 Aligned_cols=158 Identities=16% Similarity=0.135 Sum_probs=103.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+++|.+..+. .....+....... .+......+.+|||||. ..+..+ ...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 74 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGS--PYYDNV-------RPL 74 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCC--hhhhhh-------HHh
Confidence 4569999999999999999999988764 2222222222222 23344578999999995 333332 233
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH------------H-HHHHHHHHhcCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTD 256 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~------------~-~~~~~~~~~~~~ 256 (363)
++..+|++++|+|++++. ......+...+.....+.|+++|+||+|+..... + .+....+....+
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 154 (184)
T 1m7b_A 75 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 154 (184)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC
Confidence 578999999999998753 2221222232332235799999999999974211 0 111222222223
Q ss_pred CCcEEEcccC-CCCCHHHHHHHHHhhC
Q 017937 257 VDEVIPVSAK-YGHGVEDIRDWILTKL 282 (363)
Q Consensus 257 ~~~i~~vSAk-~g~gi~eL~~~i~~~l 282 (363)
..++++|||+ +|.|++++|++|.+.+
T Consensus 155 ~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 155 AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 4589999999 6899999999998765
No 123
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.4e-22 Score=174.68 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=102.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecC-CCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
+..+|+++|.+|||||||+++|.+..+..... ..+.+.......+......+.+|||||. ..+..+ +..+
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 82 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ--ERYRAI-------TSAY 82 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTT--TTTTCC-------CGGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc--cchhhh-------HHHH
Confidence 34589999999999999999999987653221 1222222222223333378999999995 333322 3345
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH--HHHHHHHHhcCCCCcEEEcccCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
++.+|++|+|+|++++. .....|+.........+.|+++|+||+|+.....+ .+....... .+ .+++++||++|
T Consensus 83 ~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~~ 160 (223)
T 3cpj_B 83 YRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE-NQ-LLFTETSALNS 160 (223)
T ss_dssp TTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHH-TT-CEEEECCCC-C
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHH-cC-CEEEEEeCCCC
Confidence 78999999999998754 33334444333222357899999999999653221 222222222 33 48999999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 017937 269 HGVEDIRDWILTKLPL 284 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (363)
.|+++++++|.+.+..
T Consensus 161 ~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 161 ENVDKAFEELINTIYQ 176 (223)
T ss_dssp CCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998865
No 124
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.86 E-value=7.4e-22 Score=168.98 Aligned_cols=156 Identities=15% Similarity=0.119 Sum_probs=104.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+++|++..+. .....++...... .+......+.+|||||. ..+..+ ..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~--------~~ 87 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETVDHQPVHLRVMDTADL--DTPRNC--------ER 87 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----CCCT--------HH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEECCEEEEEEEEECCCC--CcchhH--------HH
Confidence 4569999999999999999999988754 3344444333222 23344578899999995 333332 12
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhcccc---CCCCCEEEEEcCCCCCChhHH--HHHHHHHHhcCCCCcEEEcc
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVS 264 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~---~~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vS 264 (363)
++..+|++++|+|+++.. .....|+....... ..+.|+++|+||+|+...+.+ .+....... .+ .+++++|
T Consensus 88 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~e~S 165 (187)
T 3c5c_A 88 YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGR-FG-CLFFEVS 165 (187)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHH-HT-CEEEECC
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHH-cC-CcEEEEe
Confidence 468899999999998643 33334443333221 157999999999999643221 222222222 23 3899999
Q ss_pred c-CCCCCHHHHHHHHHhhCC
Q 017937 265 A-KYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 265 A-k~g~gi~eL~~~i~~~l~ 283 (363)
| ++|.|++++|++|.+.+.
T Consensus 166 a~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 166 ACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp SSSCSHHHHHHHHHHHHHHH
T ss_pred ecCccccHHHHHHHHHHHHh
Confidence 9 899999999999987653
No 125
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.85 E-value=7.4e-23 Score=192.73 Aligned_cols=213 Identities=19% Similarity=0.218 Sum_probs=137.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccc-----eecCCCC----------------------ceEE--------------
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----IVTNKPQ----------------------TTRH-------------- 152 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~-----~~~~~~~----------------------~t~~-------------- 152 (363)
..++|+++|.+|||||||+|+|+|.++. .++..|+ +|++
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 5679999999999999999999998874 3344444 1111
Q ss_pred ----------EEEEEEeCCCeeEEEEeCCCCchhh----hhhHHHHHHHHHHhhccc-cceEEEEeeCCCCCchHHH-HH
Q 017937 153 ----------RILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGIN-ADCIVVLVDACKAPERIDE-IL 216 (363)
Q Consensus 153 ----------~~~~~~~~~~~~i~l~DtpG~~~~~----~~~~~~~~~~~~~~~~~~-ad~ii~VvD~~~~~~~~~~-~~ 216 (363)
............+.+|||||+.... .......+...+..++.. ++++++|+|++........ .+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 0011112224789999999975421 111222333444455544 4566677787765544333 24
Q ss_pred HHhccccCCCCCEEEEEcCCCCCChhH-HHHHHHHH--HhcCCCCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCC
Q 017937 217 EEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWY--EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDI 293 (363)
Q Consensus 217 ~~~~~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~~--~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~ 293 (363)
.+.+.. .+.|+++|+||+|+.+... ........ ....++.+++++||++|.|++++++++.+ +.++.++.+.
T Consensus 190 ~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~---e~~~f~~~~~ 264 (353)
T 2x2e_A 190 AKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA---ERKFFLSHPS 264 (353)
T ss_dssp HHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH---HHHHHHHCTT
T ss_pred HHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH---HHHHhccCCc
Confidence 444444 6789999999999986433 12211100 00113346789999999999999999987 3444555555
Q ss_pred CCCchHH---HHHHHHHHHHHHhhccCCCCC----------ceEEEEEEEE
Q 017937 294 VSEHPER---FFVGEIIREKIFMQYRNEVPY----------ACQVNVVSYK 331 (363)
Q Consensus 294 ~~~~~~~---~~~~eiire~i~~~~~~evp~----------s~~i~~~~~~ 331 (363)
+++.+.+ .++.++++++++.+++.++|| ++...+..|.
T Consensus 265 ~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~~ 315 (353)
T 2x2e_A 265 YRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYK 315 (353)
T ss_dssp TGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5666666 789999999999999999999 6555555443
No 126
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.85 E-value=1.1e-20 Score=178.08 Aligned_cols=166 Identities=25% Similarity=0.385 Sum_probs=119.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
...+|+++|.+|||||||+|+|.+.... +...+++|.......+...+..+.+|||||+....................
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPE-IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCE-EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 4569999999999999999999998743 566777887776666666678899999999754332222211122333445
Q ss_pred cccceEEEEeeCCCCC----chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 194 INADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~----~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
..+|++++|+|++++. .....++....... .+.|+++|+||+|+.....+.+....... . ..+++++||++|+
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~-~-~~~~~~iSA~~g~ 321 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDVADEENIKRLEKFVKE-K-GLNPIKISALKGT 321 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTTCCHHHHHHHHHHHHH-T-TCCCEECBTTTTB
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcccCChHHHHHHHHHHHh-c-CCCeEEEeCCCCc
Confidence 6799999999987643 23334444333321 27999999999999887665444444433 2 2478999999999
Q ss_pred CHHHHHHHHHhhCC
Q 017937 270 GVEDIRDWILTKLP 283 (363)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (363)
|+++|+++|.+.+.
T Consensus 322 gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 322 GIDLVKEEIIKTLR 335 (357)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998874
No 127
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.85 E-value=9.6e-23 Score=194.05 Aligned_cols=191 Identities=21% Similarity=0.239 Sum_probs=103.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeC---------------------C---CeeEEEEeCCC
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---------------------P---EYQMILYDTPG 172 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~---~~~i~l~DtpG 172 (363)
+|+++|.||||||||+|+|++.. ..++..|++|++...+.... . ..++.+|||||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 79999999999999999999988 55788899988766554210 1 36799999999
Q ss_pred CchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC----------chHH-----------------------------
Q 017937 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP----------ERID----------------------------- 213 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~----------~~~~----------------------------- 213 (363)
+..... ....+...+..+++.+|++++|+|++++. .+..
T Consensus 81 ~~~~a~--~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~ 158 (397)
T 1wxq_A 81 LVPGAH--EGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIK 158 (397)
T ss_dssp ----------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTT
T ss_pred cccchh--hhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 753211 11112223335678999999999998751 0000
Q ss_pred ---------------------------------------------HHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHH
Q 017937 214 ---------------------------------------------EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (363)
Q Consensus 214 ---------------------------------------------~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~ 248 (363)
..+...+.. ..+|+++|+||+|+.....+....
T Consensus 159 ~~~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~--~~kP~i~v~NK~D~~~~~~l~~l~ 236 (397)
T 1wxq_A 159 LQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRR--VNKPMVIAANKADAASDEQIKRLV 236 (397)
T ss_dssp SSCCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHH--HHSCEEEEEECGGGSCHHHHHHHH
T ss_pred hcCccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhc--cCCCEEEEEeCccccchHHHHHHH
Confidence 000000000 248999999999998443344444
Q ss_pred HHHHhcCCCCcEEEcccCCCCCHHHHHH-HHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhcc
Q 017937 249 EWYEKFTDVDEVIPVSAKYGHGVEDIRD-WILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYR 316 (363)
Q Consensus 249 ~~~~~~~~~~~i~~vSAk~g~gi~eL~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~ 316 (363)
+.+... + .+++++||+.+.|+.+|++ .|.+.++.+++.|+.+++++++.+ +.|++||++|..+.
T Consensus 237 ~~~~~~-~-~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~--~~e~ire~~l~~~g 301 (397)
T 1wxq_A 237 REEEKR-G-YIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKR--ALMVIKEKVLDRFG 301 (397)
T ss_dssp HHHHHT-T-CEEEEECHHHHHHHHSCSSSCCCCSCC-------------------CTTHHHHHHTSSSS
T ss_pred HHHhhc-C-CcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHH--HHHHHHHHHHHHhC
Confidence 433322 2 4799999999999999988 899999999999999999887766 66888887776554
No 128
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.85 E-value=1.1e-21 Score=183.01 Aligned_cols=169 Identities=24% Similarity=0.270 Sum_probs=118.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC-eeEEEEeCCCCchhh--hhhHHHHHHHHHHhh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKK--IHMLDSMMMKNVRSA 192 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~l~DtpG~~~~~--~~~~~~~~~~~~~~~ 192 (363)
++|+++|.+|||||||+|+|++.+.. +..++.+|.......+...+ ..+.+|||||+.... ...+... +...
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~----fl~~ 233 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQ----FLRH 233 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHH----HHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCc-cccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHH----HHHH
Confidence 37999999999999999999987754 57788888877766666654 789999999974321 1223222 2334
Q ss_pred ccccceEEEEeeCCC---CC--chHHHHHHHhcccc--CCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCC-CCcEEEcc
Q 017937 193 GINADCIVVLVDACK---AP--ERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD-VDEVIPVS 264 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~---~~--~~~~~~~~~~~~~~--~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~-~~~i~~vS 264 (363)
+..+|++|+|+|+++ .. .....++.++.... ..++|+++|+||+|+....+. ...+..... ..+++++|
T Consensus 234 i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~---~~~l~~~l~~~~~v~~iS 310 (342)
T 1lnz_A 234 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAEN---LEAFKEKLTDDYPVFPIS 310 (342)
T ss_dssp HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHH---HHHHHHHCCSCCCBCCCS
T ss_pred HHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHH---HHHHHHHhhcCCCEEEEE
Confidence 567999999999976 22 23333333332211 147999999999999865432 122222222 24789999
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCC--CCCCC
Q 017937 265 AKYGHGVEDIRDWILTKLPLGPA--YYPKD 292 (363)
Q Consensus 265 Ak~g~gi~eL~~~i~~~l~~~~~--~~~~~ 292 (363)
|+++.|+++|+++|.+.+...++ .|+.+
T Consensus 311 A~tg~gi~eL~~~l~~~l~~~~~~~~y~~e 340 (342)
T 1lnz_A 311 AVTREGLRELLFEVANQLENTPEFPLYDEE 340 (342)
T ss_dssp SCCSSTTHHHHHHHHHHHTSCCCCCSSCSC
T ss_pred CCCCcCHHHHHHHHHHHHhhCccccCCCcc
Confidence 99999999999999999987655 55544
No 129
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=2.1e-21 Score=188.03 Aligned_cols=169 Identities=25% Similarity=0.311 Sum_probs=118.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh---hhHHHHHHHHHH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI---HMLDSMMMKNVR 190 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~---~~~~~~~~~~~~ 190 (363)
...+|+++|.+|||||||+|+|++.....+++.+++|++...+.+...+..+.+|||||+..... ............
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 34699999999999999999999998877899999999888777777888999999999732110 000000011223
Q ss_pred hhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhH--HHHHHHHHHh---cCCCCcEEEccc
Q 017937 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEK---FTDVDEVIPVSA 265 (363)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~---~~~~~~i~~vSA 265 (363)
.++..+|++++|+|++++.......+...+.. .++|+++|+||+|+...+. ..+....+.. .....+++++||
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 336 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQRMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSA 336 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBT
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 45778999999999998776655566665554 6799999999999976433 2222222211 223468999999
Q ss_pred CCCCCHHHHHHHHHhhCCC
Q 017937 266 KYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 266 k~g~gi~eL~~~i~~~l~~ 284 (363)
++|.|+++|++.+.+.+..
T Consensus 337 ~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 337 DKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999987754
No 130
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.85 E-value=1e-21 Score=170.76 Aligned_cols=158 Identities=16% Similarity=0.137 Sum_probs=103.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+++|.+..+. .....+........ +......+.+|||||. ..+..+ ...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~ 95 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGS--PYYDNV-------RPL 95 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCc--HhhhHH-------HHh
Confidence 4458999999999999999999998764 22222222222222 2344578999999995 333332 233
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH------------H-HHHHHHHHhcCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTD 256 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~------------~-~~~~~~~~~~~~ 256 (363)
++..+|++|+|+|+++.. ......|...++....+.|+++|+||+|+..... + .+....+....+
T Consensus 96 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (205)
T 1gwn_A 96 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 175 (205)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC
Confidence 578999999999998753 2221222232332235799999999999974211 0 111222222223
Q ss_pred CCcEEEcccC-CCCCHHHHHHHHHhhC
Q 017937 257 VDEVIPVSAK-YGHGVEDIRDWILTKL 282 (363)
Q Consensus 257 ~~~i~~vSAk-~g~gi~eL~~~i~~~l 282 (363)
..++++|||+ +|.|++++|++|.+.+
T Consensus 176 ~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 176 AATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 4589999999 6899999999998754
No 131
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.85 E-value=1e-21 Score=170.21 Aligned_cols=159 Identities=20% Similarity=0.218 Sum_probs=77.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceE-EEEEEEEeCC----CeeEEEEeCCCCchhhhhhHHHHHHHH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILGICSGP----EYQMILYDTPGIIEKKIHMLDSMMMKN 188 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~-~~~~~~~~~~----~~~i~l~DtpG~~~~~~~~~~~~~~~~ 188 (363)
+..+|+++|.+|||||||+++|++...........++. +.....+... ...+.+|||||+ ..+ ...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~-------~~~ 89 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS--DLY-------KEQ 89 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTT--HHH-------HHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCc--HHH-------HHH
Confidence 44599999999999999999999882222233333332 3333333333 568999999995 222 233
Q ss_pred HHhhccccceEEEEeeCCCCC--chHHHHHHHhccccC---CCCCEEEEEcCCCCCC-hhHH--HHHHHHHHhcCCCCcE
Q 017937 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIK-PGEI--AKKLEWYEKFTDVDEV 260 (363)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~---~~~piilV~NK~Dl~~-~~~~--~~~~~~~~~~~~~~~i 260 (363)
+..++..+|++++|+|++++. .....|+........ .+.|+++|+||+|+.. ...+ .+....... .+ .++
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~-~~-~~~ 167 (208)
T 2yc2_C 90 ISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT-NT-LDF 167 (208)
T ss_dssp HSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHH-TT-CEE
T ss_pred HHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHH-cC-CEE
Confidence 556689999999999998754 333444444433222 4789999999999976 3322 222233333 33 489
Q ss_pred EEcccCC-CCCHHHHHHHHHhhCC
Q 017937 261 IPVSAKY-GHGVEDIRDWILTKLP 283 (363)
Q Consensus 261 ~~vSAk~-g~gi~eL~~~i~~~l~ 283 (363)
+++||++ |.|+++++++|.+.+.
T Consensus 168 ~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 168 FDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp EECCC-------CHHHHHHHHHHH
T ss_pred EEeccCCCCcCHHHHHHHHHHHHH
Confidence 9999999 9999999999998764
No 132
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.85 E-value=2.9e-23 Score=179.46 Aligned_cols=160 Identities=18% Similarity=0.165 Sum_probs=99.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEE--eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.+.....+ ......+.+|||||. ..+..+ +..
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 101 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRTI-------TSS 101 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETTEEEEEEEECCTTC--TTCCCC-------SCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECCEEEEEEEEECCCc--HhHHHH-------HHH
Confidence 45699999999999999999999877642 222333333333333 333468999999994 333222 223
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
++..+|++++|+|+++.. .....|+.........+.|+++|+||+|+...+.+. .....+....+ .+++++||++|
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~vSA~~g 180 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-IPFLETSAKNA 180 (199)
T ss_dssp --CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTT-CCBCCCCC---
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcC-CeEEEEECCCC
Confidence 478999999999998754 233444444433323579999999999997543221 01122222223 47899999999
Q ss_pred CCHHHHHHHHHhhCCC
Q 017937 269 HGVEDIRDWILTKLPL 284 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (363)
.|+++++++|.+.+..
T Consensus 181 ~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 181 TNVEQSFMTMAAEIKK 196 (199)
T ss_dssp HHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
No 133
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.84 E-value=9.3e-21 Score=186.48 Aligned_cols=160 Identities=19% Similarity=0.163 Sum_probs=115.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|||||||+|+|++..+.. .. .|.......+...+..+.+|||||. ..+..+ +..++
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~--~~--~T~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~ 387 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVT--TI--PTVGFNVETVTYKNVKFNVWDVGGQ--DKIRPL-------WRHYY 387 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCC--CC--CCSSEEEEEEESSSCEEEEEEECCC--GGGSGG-------GGGGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCC--cC--CccceeEEEEEeCCEEEEEEECCCc--HHHHHH-------HHHHh
Confidence 45699999999999999999999988542 22 2444445566778899999999994 343333 34568
Q ss_pred cccceEEEEeeCCCCC--chHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhHHHHHHHHHHhc---CCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSAk~ 267 (363)
..+|++|+|+|++++. .....++...++.. ..++|++||+||+|+.......+....+... ....++++|||++
T Consensus 388 ~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 467 (497)
T 3lvq_E 388 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 467 (497)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTT
T ss_pred ccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCC
Confidence 9999999999998763 44455666554432 1579999999999997643333333332211 1234699999999
Q ss_pred CCCHHHHHHHHHhhCCCCC
Q 017937 268 GHGVEDIRDWILTKLPLGP 286 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~~~ 286 (363)
|.||++++++|.+.+....
T Consensus 468 g~gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 468 GDGLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp TBTHHHHHHHHHHHCC---
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 9999999999999997644
No 134
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.84 E-value=2.6e-21 Score=166.38 Aligned_cols=160 Identities=23% Similarity=0.265 Sum_probs=99.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEE--EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
..+|+++|.+|||||||+|+|++......+..+.++.+.... .++.....+.+|||+|.... ...+. ..+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~-~~~~~-------~~~ 77 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE-NEWLH-------DHC 77 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-----CTTG-------GGH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch-hhhHH-------Hhh
Confidence 458999999999999999999975543333333332222222 23334457789999995321 11121 223
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccc-cCCCCCEEEEEcCCCCCChhHHH-HHHHHHHhcCCCCcEEEcccCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
++.+|++++|+|+++.. .....|+...... ...+.|+++|+||+|+...+.+. .....+....+ .++++|||++|
T Consensus 78 ~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~-~~~~e~SA~~g 156 (192)
T 2cjw_A 78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFD-XKFIETSAAVQ 156 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTTT
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhC-CceEEeccccC
Confidence 56789999999998743 3333443332221 12478999999999996432221 11112222222 47999999999
Q ss_pred CCHHHHHHHHHhhCC
Q 017937 269 HGVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (363)
.||+++|++|.+.+.
T Consensus 157 ~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 157 HNVKELFEGIVRQVR 171 (192)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998774
No 135
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.84 E-value=1.6e-21 Score=196.99 Aligned_cols=213 Identities=18% Similarity=0.198 Sum_probs=146.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEE-----------------------------------------
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH----------------------------------------- 152 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~----------------------------------------- 152 (363)
..|+|+++|.+++|||||+|+|+|..+......+ +|+.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4569999999999999999999998763222221 1211
Q ss_pred ----------E-EEEEEeCCCeeEEEEeCCCCchhh----hhhHHHHHHHHHHhhc-cccceEEEEeeCCCCCchHHH-H
Q 017937 153 ----------R-ILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAG-INADCIVVLVDACKAPERIDE-I 215 (363)
Q Consensus 153 ----------~-~~~~~~~~~~~i~l~DtpG~~~~~----~~~~~~~~~~~~~~~~-~~ad~ii~VvD~~~~~~~~~~-~ 215 (363)
. ...+......++.|+||||+.... ...+...+...+..++ ..+|++++|+|++.+....+. .
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0 111122234568999999986521 1111122223333333 688999999999987655444 4
Q ss_pred HHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHh---cCCCCcEEEcccCCCCCHHHHHHHHHh---hCCCCCCCC
Q 017937 216 LEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHGVEDIRDWILT---KLPLGPAYY 289 (363)
Q Consensus 216 ~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSAk~g~gi~eL~~~i~~---~l~~~~~~~ 289 (363)
+...+.. .+.|+++|+||+|+.+..........-.. ..++.+++++||++|.|+++|++.|.+ .++.+|++
T Consensus 209 ll~~L~~--~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~y- 285 (772)
T 3zvr_A 209 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSY- 285 (772)
T ss_dssp HHHHHCT--TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTT-
T ss_pred HHHHHHh--cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcch-
Confidence 5666655 67999999999999865432111111001 124457899999999999999999987 46667765
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHhhccCCCCC----------ceEEEEEEEEe
Q 017937 290 PKDIVSEHPERFFVGEIIREKIFMQYRNEVPY----------ACQVNVVSYKT 332 (363)
Q Consensus 290 ~~~~~~~~~~~~~~~eiire~i~~~~~~evp~----------s~~i~~~~~~~ 332 (363)
+.+++++.++.+++++|++++.+++.++|| ++.+.+..+..
T Consensus 286 --d~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~~ 336 (772)
T 3zvr_A 286 --RHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKN 336 (772)
T ss_dssp --GGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhCC
Confidence 667889999999999999999999999999 77666666543
No 136
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.84 E-value=2.8e-20 Score=171.74 Aligned_cols=163 Identities=15% Similarity=0.122 Sum_probs=114.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe-CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
..+|+++|.+|||||||+|+|++.....++..+++|......... .++..+.+|||||. ..+ ....+...+..++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~--~~~--~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ--DVF--MENYFTKQKDHIF 78 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCS--HHH--HHHHHTTTHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCc--HHH--hhhhhhhHHHHHh
Confidence 348999999999999999999988655566778888776665554 35789999999995 332 1111223345567
Q ss_pred cccceEEEEeeCCCCC--chHHHH---HHHhccccCCCCCEEEEEcCCCCCChhHHH-------HHHHHHHhcCC--CCc
Q 017937 194 INADCIVVLVDACKAP--ERIDEI---LEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------KKLEWYEKFTD--VDE 259 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~--~~~~~~---~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-------~~~~~~~~~~~--~~~ 259 (363)
+.+|++|+|+|+++.. .....| +... .....+.|+++|+||+|+....... .....+....+ ..+
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l-~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~ 157 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQL-RKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLI 157 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHH-HHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHH-HHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeE
Confidence 8999999999999865 222222 2222 2122579999999999998733221 22334444444 268
Q ss_pred EEEcccCCCCCHHHHHHHHHhhCC
Q 017937 260 VIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 260 i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
++++||++ .|+.+++..+...+.
T Consensus 158 ~~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 158 GFPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp EEECCTTS-SHHHHHHHHHHHTTC
T ss_pred EEEeeecC-ChHHHHHHHHHHHHc
Confidence 99999999 899999888877654
No 137
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.84 E-value=1.6e-20 Score=181.53 Aligned_cols=152 Identities=17% Similarity=0.171 Sum_probs=105.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccccee------------------------------cCCCCceEEEEEEEEeCCCe
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV------------------------------TNKPQTTRHRILGICSGPEY 163 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~ 163 (363)
...+|+++|++|+|||||+++|++...... ....+.|.+.....+...+.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 456999999999999999999976432211 12256788777777888889
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCc-------hHHHHHHHhccccCCCCC-EEEEEcC
Q 017937 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-------RIDEILEEGVGDHKDKLP-ILLVLNK 235 (363)
Q Consensus 164 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~-------~~~~~~~~~~~~~~~~~p-iilV~NK 235 (363)
.+.+|||||+. . +...+..++..+|++|+|+|++++.. .+.......+.. .+.| +++|+||
T Consensus 96 ~~~iiDTPGh~--~-------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK 164 (439)
T 3j2k_7 96 HFTILDAPGHK--S-------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINK 164 (439)
T ss_pred EEEEEECCChH--H-------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeec
Confidence 99999999953 2 34455666889999999999998753 234444444443 4566 9999999
Q ss_pred CCCCCh----hHHHHHHH----HHHhcC----CCCcEEEcccCCCCCHHHHHH
Q 017937 236 KDLIKP----GEIAKKLE----WYEKFT----DVDEVIPVSAKYGHGVEDIRD 276 (363)
Q Consensus 236 ~Dl~~~----~~~~~~~~----~~~~~~----~~~~i~~vSAk~g~gi~eL~~ 276 (363)
+|+... ........ .+.... ...+++++||++|.|++++.+
T Consensus 165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 165 MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 999642 11222222 221111 135799999999999999554
No 138
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.84 E-value=3.5e-20 Score=158.20 Aligned_cols=160 Identities=26% Similarity=0.359 Sum_probs=99.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHHHHHHHHHHhh-
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSA- 192 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~--~~~~~~~~~~~~~~- 192 (363)
.+|+++|.+|||||||+|+|++..+. ....+++|......... .+.+|||||+..... ......+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-cCCCCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 38999999999999999999998764 45666766554433332 789999999532100 00011111222222
Q ss_pred ---ccccceEEEEeeCCCCCchHHHH-----------HHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCC-
Q 017937 193 ---GINADCIVVLVDACKAPERIDEI-----------LEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV- 257 (363)
Q Consensus 193 ---~~~ad~ii~VvD~~~~~~~~~~~-----------~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~- 257 (363)
...++++++|+|..........| +...+.. .+.|+++|+||+|+.... .+....+....+.
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCH--HHHHHHHHHHHTCC
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEeehHhccCcH--HHHHHHHHHHhhhh
Confidence 44566777777765321111222 1222222 579999999999998654 1112222222222
Q ss_pred -----CcEEEcccCCCCCHHHHHHHHHhhCCC
Q 017937 258 -----DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 258 -----~~i~~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
.+++++||++|.|+++++++|.+.+..
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 258999999999999999999987753
No 139
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.74 E-value=1.8e-22 Score=175.13 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=104.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEE--EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||+++|++..+. .....++....... .......+.+|||||. ..+. ..+..
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~-------~~~~~ 97 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ--EDYD-------RLRPL 97 (204)
Confidence 5568999999999999999999987653 23333433333222 2334466779999994 3332 22334
Q ss_pred hccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-------------HHHHHHHhcCC
Q 017937 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTD 256 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-------------~~~~~~~~~~~ 256 (363)
++..+|++++|+|++++. ......+...+.....+.|+++|+||+|+....... .....+....+
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 3th5_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
Confidence 578999999999998754 333223333333322379999999999997543111 11111222223
Q ss_pred CCcEEEcccCCCCCHHHHHHHHHhhC
Q 017937 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 257 ~~~i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
..+++++||++|.|+++++++|.+.+
T Consensus 178 ~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 178 AVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 34789999999999999999988754
No 140
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.83 E-value=1.8e-20 Score=159.84 Aligned_cols=159 Identities=13% Similarity=0.070 Sum_probs=101.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCC-CCceEEEEEEEE-----eCCCeeEEEEeCCCCchhhhhhHHHHHHHHH
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGIC-----SGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~-~~~t~~~~~~~~-----~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 189 (363)
.+|+++|.+|||||||+++|.+......... +....+.....+ ......+.+|||||. ..+..+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~------ 74 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGR--EEFYSTHP------ 74 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSH--HHHHTTSH------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCC--HHHHHhhH------
Confidence 4899999999999999999998532212222 222222222221 124578999999994 44433322
Q ss_pred HhhccccceEEEEeeCCCCC---chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHH----HHHHHHhcCCCC---c
Q 017937 190 RSAGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK----KLEWYEKFTDVD---E 259 (363)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~---~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~----~~~~~~~~~~~~---~ 259 (363)
.++..+|++++|+|.+++. .....|+...... ..+.|+++|+||+|+.....+.. ....+....+.. +
T Consensus 75 -~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
T 2zej_A 75 -HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRD 152 (184)
T ss_dssp -HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEE
T ss_pred -HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhh
Confidence 3366799999999998763 3344454443322 24789999999999987655432 223333333332 3
Q ss_pred EEEcccCCCC-CHHHHHHHHHhhCCC
Q 017937 260 VIPVSAKYGH-GVEDIRDWILTKLPL 284 (363)
Q Consensus 260 i~~vSAk~g~-gi~eL~~~i~~~l~~ 284 (363)
++++||++|. |+++|++.|.+.+..
T Consensus 153 ~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 153 YHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp EEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred eEEEecccCchhHHHHHHHHHHHHhc
Confidence 8999999997 999999999887754
No 141
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.83 E-value=9e-21 Score=169.64 Aligned_cols=177 Identities=15% Similarity=0.138 Sum_probs=114.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCC-CceEEEEEEEEeCCCeeEEEEeCCCCchhhh---hhHHHHHHHHH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICSGPEYQMILYDTPGIIEKKI---HMLDSMMMKNV 189 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~---~~~~~~~~~~~ 189 (363)
...+|+++|.+|||||||+|+|++..+......+ ++|...........+..+.+|||||+..... ..+.......+
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~ 99 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCY 99 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHH
Confidence 4558999999999999999999998876544333 4777777777777889999999999854221 11122222333
Q ss_pred HhhccccceEEEEeeCCCCCchHHHHHHHhcccc----CCCCCEEEEEcCCCCCChhH---H-----HHHHHHHHhcCCC
Q 017937 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGE---I-----AKKLEWYEKFTDV 257 (363)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~----~~~~piilV~NK~Dl~~~~~---~-----~~~~~~~~~~~~~ 257 (363)
......+|++|+|+|+++ .......+.+.+... ..+.|+++|+||+|+..... + ......+....+
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~- 177 (247)
T 3lxw_A 100 LLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGG- 177 (247)
T ss_dssp HHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT-
T ss_pred HhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC-
Confidence 344589999999999985 444444433333321 12689999999999965321 1 112223333332
Q ss_pred CcEEEcccCC-----CCCHHHHHHHHHhhCCC-CCCCCCCCC
Q 017937 258 DEVIPVSAKY-----GHGVEDIRDWILTKLPL-GPAYYPKDI 293 (363)
Q Consensus 258 ~~i~~vSAk~-----g~gi~eL~~~i~~~l~~-~~~~~~~~~ 293 (363)
+++.+++.. +.|+++|++.|.+.+.. ++..|+.++
T Consensus 178 -~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~ 218 (247)
T 3lxw_A 178 -RVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEV 218 (247)
T ss_dssp -CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHH
T ss_pred -eEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 355454443 68999999999999974 667777664
No 142
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.83 E-value=4.6e-20 Score=180.12 Aligned_cols=160 Identities=24% Similarity=0.321 Sum_probs=111.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcccc------ceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHH
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKL------SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMM 186 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~ 186 (363)
++..+|+++|++++|||||+++|++... ......++.|.+.....+...+..+.+|||||+ .. +.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh--~~-------~~ 87 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH--AD-------LI 87 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH--HH-------HH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh--HH-------HH
Confidence 4567999999999999999999998761 112344556665544445556789999999995 22 34
Q ss_pred HHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHH----HHHhc--CCCCcE
Q 017937 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLE----WYEKF--TDVDEV 260 (363)
Q Consensus 187 ~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~----~~~~~--~~~~~i 260 (363)
..+...+..+|++|+|+|++++...+.......+.. .+.|+++|+||+|+.+........+ .+... ....++
T Consensus 88 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 88 RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 456667899999999999998776665555555555 5789999999999987544333222 22221 113589
Q ss_pred EEcccCCCCCHHHHHHHHHhhCC
Q 017937 261 IPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 261 ~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
+++||++|.|+++|+++|.+.++
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999998653
No 143
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.83 E-value=2.8e-21 Score=190.13 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=85.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce---------------------ecCCCCceEEEEEEEEeCCCeeEEEEeCCC
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------------VTNKPQTTRHRILGICSGPEYQMILYDTPG 172 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~---------------------~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG 172 (363)
+.++|+|+|++|+|||||+|+|++....+ .....+.|.......+.+.+..+++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 44589999999999999999997321110 011234444444455666789999999999
Q ss_pred CchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCCh
Q 017937 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 241 (363)
+.+ +. ..+..+++.+|++|+|+|++++.......+...+.. .++|+++|+||+|+...
T Consensus 92 ~~d--f~-------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~--~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HAD--FT-------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL--RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp STT--CC-------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT--TTCCEEEEEECTTSCCS
T ss_pred chh--HH-------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccc
Confidence 643 22 235566899999999999999887776666666665 67999999999999753
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.83 E-value=2.8e-20 Score=175.11 Aligned_cols=169 Identities=22% Similarity=0.198 Sum_probs=108.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
.|+++|++|||||||+|+|.+..+ .+.+.+++|++.....+...+..+.+|||||+.......+...+ ..+...+..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f-~~tl~~~~~a 258 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAF-FVTLSEAKYS 258 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHH-HHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHH-HHHHHHHHhC
Confidence 599999999999999999999876 46778888888777777777789999999997543222232323 3344568899
Q ss_pred ceEEEEeeCCCCCc---hHHHHHHHhccccC-CCCCEEEEEcCCCCCChhHH--HHHH-HHHHhc-CCCCcEEEcccCCC
Q 017937 197 DCIVVLVDACKAPE---RIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI--AKKL-EWYEKF-TDVDEVIPVSAKYG 268 (363)
Q Consensus 197 d~ii~VvD~~~~~~---~~~~~~~~~~~~~~-~~~piilV~NK~Dl~~~~~~--~~~~-~~~~~~-~~~~~i~~vSAk~g 268 (363)
|++++|+|++++.. .....+...+.... .+.|+++|+||+|+.+.... .... ...... ....+++++||++|
T Consensus 259 D~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g 338 (364)
T 2qtf_A 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKR 338 (364)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTT
T ss_pred CEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 99999999987641 11112222222221 56899999999999864311 1111 111222 22236899999999
Q ss_pred CCHHHHHHHHHhhCCCCCC
Q 017937 269 HGVEDIRDWILTKLPLGPA 287 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~ 287 (363)
.|+++|+++|.+.+...++
T Consensus 339 ~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 339 TNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp BSHHHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHhcccCC
Confidence 9999999999988765444
No 145
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.82 E-value=8e-20 Score=174.99 Aligned_cols=162 Identities=19% Similarity=0.187 Sum_probs=107.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEE--------------EEEEEe-----CCCeeEEEEeCCCCc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR--------------ILGICS-----GPEYQMILYDTPGII 174 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~--------------~~~~~~-----~~~~~i~l~DtpG~~ 174 (363)
...+|+++|++|+|||||+|+|++...........++... ...... .....+.+|||||+.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 4569999999999999999999985432110000011000 000000 011679999999953
Q ss_pred hhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC-chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHh
Q 017937 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK 253 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~ 253 (363)
. +...+...+..+|++|+|+|++++. ......+...+... ...|+++|+||+|+.+........+.+..
T Consensus 87 --~-------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~ 156 (403)
T 3sjy_A 87 --V-------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQ 156 (403)
T ss_dssp --G-------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred --H-------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHH
Confidence 2 2334555678999999999999875 54444444444432 33689999999999987654443333322
Q ss_pred c-----CCCCcEEEcccCCCCCHHHHHHHHHhhCCCC
Q 017937 254 F-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (363)
Q Consensus 254 ~-----~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~ 285 (363)
. ....+++++||++|.|+++|+++|.+.++..
T Consensus 157 ~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 157 FTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 1 1245899999999999999999999988653
No 146
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.82 E-value=1.2e-21 Score=192.00 Aligned_cols=159 Identities=20% Similarity=0.261 Sum_probs=116.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeC-CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
++++|+++|++|+|||||+++|.+..+.. ...+++|.+.....+.. .+..+.||||||+ ..+..+ +..+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~-~~~~giT~~i~~~~v~~~~g~~i~~iDTPGh--e~f~~~-------~~~~ 72 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAA-MEAGGITQHIGAFLVSLPSGEKITFLDTPGH--AAFSAM-------RARG 72 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHH-SSSCCBCCCTTSCCBCSSCSSCCBCEECSSS--CCTTTS-------BBSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc-ccCCceeEEEeEEEEEeCCCCEEEEEECCCh--HHHHHH-------HHHH
Confidence 67799999999999999999999887763 45667777654444444 4568999999995 333322 2344
Q ss_pred ccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh--HHHHHHHHH----HhcCCCCcEEEcccC
Q 017937 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWY----EKFTDVDEVIPVSAK 266 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~~----~~~~~~~~i~~vSAk 266 (363)
+..+|++|+|+|++++...........+.. .+.|+++|+||+|+.... ........+ ..+.+..+++++||+
T Consensus 73 ~~~aD~vILVVDa~dg~~~qt~e~l~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk 150 (537)
T 3izy_P 73 TQVTDIVILVVAADDGVMKQTVESIQHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL 150 (537)
T ss_dssp SBSBSSCEEECBSSSCCCHHHHHHHHHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred HccCCEEEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence 788999999999999887766666666555 678999999999997432 111111111 112234589999999
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 017937 267 YGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (363)
+|.|+++|+++|...+..
T Consensus 151 tG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 151 TGENMMALAEATIALAEM 168 (537)
T ss_dssp SSCSSHHHHHHHHHHHTT
T ss_pred CCCCchhHHHHHHHhhhc
Confidence 999999999999987654
No 147
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.81 E-value=3.8e-20 Score=172.25 Aligned_cols=159 Identities=17% Similarity=0.117 Sum_probs=108.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCC--CeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+..+|+++|.+|||||||++++++..+. .....++.......+..+ ...+.+|||||. ..+..+ ...
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 222 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL--EDYDRL-------RPL 222 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC--CSCCCCSEEEEEEEEEETTEEEEEEEEEECCC--GGGTTT-------GGG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC--cccCCcccceeEEEEEECCEEEEEEEEeCCCc--hhhhHH-------HHH
Confidence 4469999999999999999999987763 445556655554444433 345669999995 333222 334
Q ss_pred hccccceEEEEeeCCCCCc--hHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH-------------HHHHHHHhcCC
Q 017937 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTD 256 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~--~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~-------------~~~~~~~~~~~ 256 (363)
++..+|++++|+|++++.. .....+...+.....+.|+++|+||+|+....... .....+....+
T Consensus 223 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 302 (332)
T 2wkq_A 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302 (332)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcC
Confidence 5889999999999987542 22212333333322479999999999996532211 11122223334
Q ss_pred CCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 257 ~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
..++++|||++|.|+++++++|.+.+.
T Consensus 303 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 303 AVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 458999999999999999999988764
No 148
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.81 E-value=3.1e-21 Score=187.44 Aligned_cols=149 Identities=20% Similarity=0.265 Sum_probs=98.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccc--cc----------------------ee------cCCCCceEEEEEEEEeCCCe
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQK--LS----------------------IV------TNKPQTTRHRILGICSGPEY 163 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~--~~----------------------~~------~~~~~~t~~~~~~~~~~~~~ 163 (363)
...+|+++|++|+|||||+|+|++.. +. .+ ....+.|.+.....+...+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 34589999999999999999998641 10 00 01245565554455667788
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCch-------HHHHHHHhccccCCCCC-EEEEEcC
Q 017937 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER-------IDEILEEGVGDHKDKLP-ILLVLNK 235 (363)
Q Consensus 164 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~-------~~~~~~~~~~~~~~~~p-iilV~NK 235 (363)
.+.+|||||+. . +...+..++..+|++|+|+|++++... +.......+.. .+.| +++|+||
T Consensus 86 ~~~iiDtPGh~--~-------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK 154 (458)
T 1f60_A 86 QVTVIDAPGHR--D-------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNK 154 (458)
T ss_dssp EEEEEECCCCT--T-------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEEC
T ss_pred eEEEEECCCcH--H-------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEc
Confidence 99999999963 2 334466678999999999999865321 23333333333 4565 9999999
Q ss_pred CCCCC--hhHHHHHH----HHHHhcCC---CCcEEEcccCCCCCHHH
Q 017937 236 KDLIK--PGEIAKKL----EWYEKFTD---VDEVIPVSAKYGHGVED 273 (363)
Q Consensus 236 ~Dl~~--~~~~~~~~----~~~~~~~~---~~~i~~vSAk~g~gi~e 273 (363)
+|+.. ........ ..+....- ..+++++||++|.|+.+
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 99973 33222222 22222211 25899999999999863
No 149
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.81 E-value=1.7e-19 Score=163.80 Aligned_cols=167 Identities=16% Similarity=0.174 Sum_probs=96.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecC-------CCCceEEEEEEEEeCCC--eeEEEEeCCCCch-----hhhhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPE--YQMILYDTPGIIE-----KKIHM 180 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~-------~~~~t~~~~~~~~~~~~--~~i~l~DtpG~~~-----~~~~~ 180 (363)
..+|+++|.+|+|||||+|+|++........ .+.++.......+...+ ..+.+|||||+.+ ..+..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 3489999999999999999999877653332 23333333333344333 5899999999732 11223
Q ss_pred HHHHHHHHHHhhcc-------------ccceEEEEeeCCC-CCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHH
Q 017937 181 LDSMMMKNVRSAGI-------------NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (363)
Q Consensus 181 ~~~~~~~~~~~~~~-------------~ad~ii~VvD~~~-~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~ 246 (363)
+......+...++. .+|+++++++.+. +....+..+...+.. ++|+++|+||+|+....++..
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~~~ 164 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQQ 164 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHHHH
Confidence 32222222233333 2778999887664 556666666666553 799999999999987766544
Q ss_pred HHHHHHhc--CCCCcEEEcccCCCCCHHHHHHHHHhhCCC
Q 017937 247 KLEWYEKF--TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 247 ~~~~~~~~--~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
....+... ....+++++||++++|+++++++|.+.++.
T Consensus 165 ~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 165 FKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp HHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred HHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence 43322221 122468899999999999999999998864
No 150
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.81 E-value=7.1e-20 Score=182.14 Aligned_cols=196 Identities=20% Similarity=0.239 Sum_probs=120.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccccee--------c------CCCCceEEEEEEEE-----eCCCeeEEEEeCCCCch
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV--------T------NKPQTTRHRILGIC-----SGPEYQMILYDTPGIIE 175 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~--------~------~~~~~t~~~~~~~~-----~~~~~~i~l~DtpG~~~ 175 (363)
..+|+|+|++++|||||+++|+....... . ...+.|.......+ +...+.+++|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 34899999999999999999986432111 0 11233333222222 22347899999999743
Q ss_pred hhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcC
Q 017937 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT 255 (363)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~ 255 (363)
+. ..+..++..+|++|+|+|++++........+..... .+.|+++|+||+|+..... ......+....
T Consensus 84 --F~-------~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--~~ipiIvViNKiDl~~a~~-~~v~~ei~~~l 151 (599)
T 3cb4_D 84 --FS-------YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--MDLEVVPVLNKIDLPAADP-ERVAEEIEDIV 151 (599)
T ss_dssp --GH-------HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--TTCEEEEEEECTTSTTCCH-HHHHHHHHHHT
T ss_pred --HH-------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEeeeccCcccccH-HHHHHHHHHHh
Confidence 22 234455788999999999998775544433333333 5789999999999976432 22223333322
Q ss_pred CC--CcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHh-hccCCCCCceEEEEEEEEe
Q 017937 256 DV--DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKT 332 (363)
Q Consensus 256 ~~--~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~-~~~~evp~s~~i~~~~~~~ 332 (363)
+. .+++++||++|.|+++|+++|.+.++..... .+.|.+.++ +. .+.+.+|..+.+++..+..
T Consensus 152 g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~------~~~p~~alI--------~d~~~d~~~G~v~~~rV~sG~l 217 (599)
T 3cb4_D 152 GIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEGD------PEGPLQALI--------IDSWFDNYLGVVSLIRIKNGTL 217 (599)
T ss_dssp CCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCCC------TTSCCEEEE--------EEEEEETTTEEEEEEEEEESCE
T ss_pred CCCcceEEEeecccCCCchhHHHHHhhcCCCcccc------ccCCceeee--------eeccccccccEEEEEEEEeCEE
Confidence 22 3589999999999999999999999764321 122222111 11 2357789999999999888
Q ss_pred cCCC
Q 017937 333 RPTA 336 (363)
Q Consensus 333 ~~~~ 336 (363)
..+.
T Consensus 218 ~~Gd 221 (599)
T 3cb4_D 218 RKGD 221 (599)
T ss_dssp ESSC
T ss_pred ecCC
Confidence 7653
No 151
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=159.34 Aligned_cols=168 Identities=15% Similarity=0.232 Sum_probs=107.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCC--CceEEEEEEEEeCCCeeEEEEeCCCCchhhh--hhHHHHHHHHH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP--QTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNV 189 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~--~~~~~~~~~~~ 189 (363)
+.++|+++|.+|||||||+|+|++..+. .+..+ ++|...........+..+.+|||||+..... ..+...+...+
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 5569999999999999999999998874 33333 5677666666777788999999999854321 12233445556
Q ss_pred HhhccccceEEEEeeCCCCCchHHHHHHHhcccc--CCCCCEEEEEcCCCCCChhHHH--------HHHHHHHhcCCCCc
Q 017937 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIA--------KKLEWYEKFTDVDE 259 (363)
Q Consensus 190 ~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~--~~~~piilV~NK~Dl~~~~~~~--------~~~~~~~~~~~~~~ 259 (363)
..++..+|++|+|+|+++.......++..+.... ....|+++|+||+|+.....+. ........... .
T Consensus 107 ~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~--~ 184 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD--R 184 (239)
T ss_dssp HHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS--S
T ss_pred HhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC--E
Confidence 6667889999999999754443333333332211 1236999999999997654443 12222233322 4
Q ss_pred EEEcccCC-----CCCHHHHHHHHHhhCCC
Q 017937 260 VIPVSAKY-----GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 260 i~~vSAk~-----g~gi~eL~~~i~~~l~~ 284 (363)
++.+++.. +.|+.+|++.+.+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 185 YCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 66666553 37899999999888754
No 152
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.79 E-value=1.4e-18 Score=166.71 Aligned_cols=161 Identities=17% Similarity=0.195 Sum_probs=107.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccce--ecCCCCceEEEEEEE--E-e----------------CC----CeeEEEEe
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGI--C-S----------------GP----EYQMILYD 169 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~--~~~~~~~t~~~~~~~--~-~----------------~~----~~~i~l~D 169 (363)
..+|+++|++++|||||+++|++..... ....++.|.+..... + . .. ...+.+||
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 4589999999999999999999653211 122344444322111 1 0 00 16799999
Q ss_pred CCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC-chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHH-
Q 017937 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK- 247 (363)
Q Consensus 170 tpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~- 247 (363)
|||+ .. +...+...+..+|++|+|+|++++. ..+.......+... ...|+++|+||+|+.+.......
T Consensus 90 tPGh--~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 90 APGH--EA-------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp CSSH--HH-------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred CCCh--HH-------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEECccCCCHHHHHHHH
Confidence 9994 32 2344556678999999999999875 44443333333321 33689999999999876543222
Q ss_pred ---HHHHHhc-CCCCcEEEcccCCCCCHHHHHHHHHhhCCCC
Q 017937 248 ---LEWYEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (363)
Q Consensus 248 ---~~~~~~~-~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~ 285 (363)
...+... ....+++++||++|.|+++|+++|.+.++..
T Consensus 160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 2222221 1345899999999999999999999988753
No 153
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.79 E-value=1.2e-18 Score=166.96 Aligned_cols=162 Identities=16% Similarity=0.176 Sum_probs=100.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce--ecCCCCceEEEEEEE--E-e--------C----C--------CeeEEEE
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGI--C-S--------G----P--------EYQMILY 168 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~--~~~~~~~t~~~~~~~--~-~--------~----~--------~~~i~l~ 168 (363)
...+|+++|++++|||||+++|.+..... ....++.|....... + . . . ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 44589999999999999999999654221 122234444321111 0 0 0 1 1679999
Q ss_pred eCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC-chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH----
Q 017937 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---- 243 (363)
Q Consensus 169 DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---- 243 (363)
||||+ .. +...+...+..+|++|+|+|++++. ..+.......+... ...|+++|+||+|+.+...
T Consensus 87 DtPGh--~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l-~~~~iivv~NK~Dl~~~~~~~~~ 156 (408)
T 1s0u_A 87 DSPGH--ET-------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL-GIDKIIIVQNKIDLVDEKQAEEN 156 (408)
T ss_dssp ECSSH--HH-------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCCCEEEEEECTTSSCTTTTTTH
T ss_pred ECCCH--HH-------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc-CCCeEEEEEEccCCCCHHHHHHH
Confidence 99994 32 2344566678899999999999875 44443333333331 2358999999999986432
Q ss_pred HHHHHHHHHhc-CCCCcEEEcccCCCCCHHHHHHHHHhhCCCC
Q 017937 244 IAKKLEWYEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (363)
Q Consensus 244 ~~~~~~~~~~~-~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~ 285 (363)
..+..+.+... ....+++++||++|.|+++|+++|.+.++..
T Consensus 157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 23333333321 2345899999999999999999999988753
No 154
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.79 E-value=1e-20 Score=184.01 Aligned_cols=157 Identities=20% Similarity=0.269 Sum_probs=109.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
|+++|+++|++++|||||+++|.+..+. ....++.|.+.....+..++..+.||||||+ ..+..+ +...+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGh--e~f~~~-------~~~~~ 72 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGH--AAFTSM-------RARGA 72 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTT--TCCTTS-------BCSSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCc--HHHHHH-------HHHHH
Confidence 6779999999999999999999986654 2344556655444445556788999999996 333322 23447
Q ss_pred cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh--HHHHHHHH---H-HhcCCCCcEEEcccCC
Q 017937 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEW---Y-EKFTDVDEVIPVSAKY 267 (363)
Q Consensus 194 ~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~~~~~---~-~~~~~~~~i~~vSAk~ 267 (363)
..+|++++|+|++++...+.......+.. .+.|+++|+||+|+.... .+...... + ..+.+..+++++||++
T Consensus 73 ~~aD~aILVVda~~g~~~qT~e~l~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAkt 150 (501)
T 1zo1_I 73 QATDIVVLVVAADDGVMPQTIEAIQHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKA 150 (501)
T ss_dssp BSCSSEEEEEETTTBSCTTTHHHHHHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTT
T ss_pred hhCCEEEEEeecccCccHHHHHHHHHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeee
Confidence 88999999999988764444444444444 678999999999997431 11110000 0 1111235899999999
Q ss_pred CCCHHHHHHHHHhhC
Q 017937 268 GHGVEDIRDWILTKL 282 (363)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (363)
|.|+++|+++|....
T Consensus 151 G~gI~eLle~I~~~~ 165 (501)
T 1zo1_I 151 GTGIDELLDAILLQA 165 (501)
T ss_dssp CTTCTTHHHHTTTTC
T ss_pred ccCcchhhhhhhhhh
Confidence 999999999998653
No 155
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.79 E-value=3.5e-19 Score=170.65 Aligned_cols=161 Identities=18% Similarity=0.178 Sum_probs=113.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc--------cccee--c------CCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ--------KLSIV--T------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~--------~~~~~--~------~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~ 177 (363)
...+|+++|++|+|||||+++|++. .+... . ...+.|.+.....+...+..+.+|||||+.+
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~-- 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD-- 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG--
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH--
Confidence 4458999999999999999999873 11100 0 1345555555555666778999999999643
Q ss_pred hhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCC-EEEEEcCCCCCCh-hHHH----HHHHHH
Q 017937 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKP-GEIA----KKLEWY 251 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~-~~~~----~~~~~~ 251 (363)
+ ...+..++..+|++|+|+|++++...+...+...+.. .+.| +++|+||+|+... .... +....+
T Consensus 88 f-------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~--~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l 158 (405)
T 2c78_A 88 Y-------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158 (405)
T ss_dssp G-------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEECccccCcHHHHHHHHHHHHHHH
Confidence 2 2345556789999999999998876666555555554 5678 8999999999842 2222 122233
Q ss_pred HhcC---CCCcEEEcccCCCCC------------------HHHHHHHHHhhCCCC
Q 017937 252 EKFT---DVDEVIPVSAKYGHG------------------VEDIRDWILTKLPLG 285 (363)
Q Consensus 252 ~~~~---~~~~i~~vSAk~g~g------------------i~eL~~~i~~~l~~~ 285 (363)
.... ...+++++||++|.| +.+|+++|.+.++..
T Consensus 159 ~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 3222 136899999999987 889999999988753
No 156
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.79 E-value=8e-21 Score=189.65 Aligned_cols=159 Identities=17% Similarity=0.154 Sum_probs=88.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceec------------------------------CCCCceEEEEEEEEeCCCe
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT------------------------------NKPQTTRHRILGICSGPEY 163 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~ 163 (363)
...+|+++|++|+|||||+|+|++....+.. ..+++|.+.....+...+.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 4558999999999999999999754322211 1456677766666777778
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC-------chHHHHHHHhccccCCCCC-EEEEEcC
Q 017937 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLP-ILLVLNK 235 (363)
Q Consensus 164 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~-------~~~~~~~~~~~~~~~~~~p-iilV~NK 235 (363)
.+.||||||+.... ..+..++..+|++|+|+|++++. ..+.......+.. .+.| +|+|+||
T Consensus 256 ~i~iiDTPGh~~f~---------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNK 324 (592)
T 3mca_A 256 IYEIGDAPGHRDFI---------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNK 324 (592)
T ss_dssp ---CCEEESSSEEE---------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEEC
T ss_pred EEEEEECCChHHHH---------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEec
Confidence 99999999974321 11233467899999999998742 4444444444444 4565 9999999
Q ss_pred CCCCC--hhHHHHHHHHHH----hcCCC----CcEEEcccCCCCCHH--------------HHHHHHHhhCC
Q 017937 236 KDLIK--PGEIAKKLEWYE----KFTDV----DEVIPVSAKYGHGVE--------------DIRDWILTKLP 283 (363)
Q Consensus 236 ~Dl~~--~~~~~~~~~~~~----~~~~~----~~i~~vSAk~g~gi~--------------eL~~~i~~~l~ 283 (363)
+|+.. ..........+. ...++ .+++++||++|.|+. .|++.|...++
T Consensus 325 iDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 325 LDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred cccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 99975 333332222222 22232 379999999999998 79999888765
No 157
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.79 E-value=7.1e-19 Score=174.64 Aligned_cols=199 Identities=24% Similarity=0.285 Sum_probs=124.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccccee--------cC------CCCceEEEE--EEEE---eCCCeeEEEEeCCCCc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV--------TN------KPQTTRHRI--LGIC---SGPEYQMILYDTPGII 174 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~--------~~------~~~~t~~~~--~~~~---~~~~~~i~l~DtpG~~ 174 (363)
+..+|+++|++++|||||+++|++...... .+ ..+.|.... ...+ +...+.+++|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 345899999999999999999986421110 00 122222211 1112 1234789999999975
Q ss_pred hhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhc
Q 017937 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF 254 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~ 254 (363)
+.. ..+..++..+|++|+|+|++++........+..... .+.|+++|+||+|+.... .......+...
T Consensus 85 dF~---------~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--~~ipiIvviNKiDl~~a~-~~~v~~el~~~ 152 (600)
T 2ywe_A 85 DFS---------YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--QDLVIIPVINKIDLPSAD-VDRVKKQIEEV 152 (600)
T ss_dssp GGH---------HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--TTCEEEEEEECTTSTTCC-HHHHHHHHHHT
T ss_pred hHH---------HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--CCCCEEEEEeccCccccC-HHHHHHHHHHh
Confidence 422 234445789999999999998876554443333333 679999999999997643 22333444443
Q ss_pred CCC--CcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHh-hccCCCCCceEEEEEEEE
Q 017937 255 TDV--DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYK 331 (363)
Q Consensus 255 ~~~--~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~-~~~~evp~s~~i~~~~~~ 331 (363)
.+. .+++++||++|.|+++|+++|.+.++..... .+.|.+.. ++. .+.+..|..+.+.+..+.
T Consensus 153 lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~~------~~~pl~~l--------V~~~~~d~~~G~v~~~rV~sG~ 218 (600)
T 2ywe_A 153 LGLDPEEAILASAKEGIGIEEILEAIVNRIPPPKGD------PQKPLKAL--------IFDSYYDPYRGAVAFVRIFDGE 218 (600)
T ss_dssp SCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCCCC------TTSCCEEE--------EEEEEEETTTEEEEEEEEEESE
T ss_pred hCCCcccEEEEEeecCCCchHHHHHHHHhccccccc------ccCCccee--------EEEEeecccceEEEEEEEEeCE
Confidence 333 2589999999999999999999999753321 11121111 111 134567788888899988
Q ss_pred ecCCCee
Q 017937 332 TRPTAKD 338 (363)
Q Consensus 332 ~~~~~~~ 338 (363)
...+..+
T Consensus 219 l~~Gd~I 225 (600)
T 2ywe_A 219 VKPGDKI 225 (600)
T ss_dssp ECTTCEE
T ss_pred EecCCEE
Confidence 8865433
No 158
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.79 E-value=6.2e-19 Score=166.40 Aligned_cols=146 Identities=15% Similarity=0.099 Sum_probs=106.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~a 196 (363)
+|+++|++|+|||||+++|+ ..+.|.+.....+...+..+.+|||||+.+ + ...+...+..+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~--f-------~~~~~~~~~~a 84 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK--T-------LKSLITALNIS 84 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTT--C-------HHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHH--H-------HHHHHHHHHHC
Confidence 89999999999999999998 223344444445666778999999999633 2 23344557899
Q ss_pred ceEEEEeeCCCCCchHHHHHHHhccccCCCCCE-EEEEc-CCCCCChhHHHHHHHHHHhcC-----CCCcEEE--cccCC
Q 017937 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLN-KKDLIKPGEIAKKLEWYEKFT-----DVDEVIP--VSAKY 267 (363)
Q Consensus 197 d~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~pi-ilV~N-K~Dl~~~~~~~~~~~~~~~~~-----~~~~i~~--vSAk~ 267 (363)
|++|+|+| ..+...+...+...+.. .+.|. ++|+| |+|+ +.+......+.+.... ...++++ +||++
T Consensus 85 D~ailVvd-~~g~~~qt~e~~~~~~~--~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~ 160 (370)
T 2elf_A 85 DIAVLCIP-PQGLDAHTGECIIALDL--LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSA 160 (370)
T ss_dssp SEEEEEEC-TTCCCHHHHHHHHHHHH--TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTS
T ss_pred CEEEEEEc-CCCCcHHHHHHHHHHHH--cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEeccccccc
Confidence 99999999 77776665555555554 56787 99999 9999 6554333222222211 2358999 99999
Q ss_pred ---CCCHHHHHHHHHhhCCC
Q 017937 268 ---GHGVEDIRDWILTKLPL 284 (363)
Q Consensus 268 ---g~gi~eL~~~i~~~l~~ 284 (363)
|.|+++|+++|.+.++.
T Consensus 161 ~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 161 KNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp SSTTTTHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHhhccc
Confidence 99999999999988753
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.78 E-value=3.3e-18 Score=163.41 Aligned_cols=159 Identities=18% Similarity=0.154 Sum_probs=112.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccc-------ce--------ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKL-------SI--------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~-------~~--------~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~ 179 (363)
..+|+++|++|+|||||+++|++... .. .....+.|.+.....+...+..+.+|||||+ ..
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~--~~-- 78 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGH--AD-- 78 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSH--HH--
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCCh--HH--
Confidence 34899999999999999999987411 00 0113455666555556667789999999995 22
Q ss_pred hHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCC-EEEEEcCCCCCC-hhHHH----HHHHHHHh
Q 017937 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIK-PGEIA----KKLEWYEK 253 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~-~~~~~----~~~~~~~~ 253 (363)
+...+..++..+|++|+|+|++++...+.......+.. .+.| +++|+||+|+.. ..... +..+.+..
T Consensus 79 -----f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~ 151 (397)
T 1d2e_A 79 -----YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTE 151 (397)
T ss_dssp -----HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHH
Confidence 23455667899999999999998876655555455544 5678 789999999985 22221 22223332
Q ss_pred cC---CCCcEEEcccCCCCC----------HHHHHHHHHhhCCC
Q 017937 254 FT---DVDEVIPVSAKYGHG----------VEDIRDWILTKLPL 284 (363)
Q Consensus 254 ~~---~~~~i~~vSAk~g~g----------i~eL~~~i~~~l~~ 284 (363)
.. ...+++++||++|.| +.+|+++|.+.++.
T Consensus 152 ~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred cCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 22 135899999999875 89999999998875
No 160
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.78 E-value=4.1e-18 Score=148.01 Aligned_cols=167 Identities=23% Similarity=0.223 Sum_probs=102.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccc-cceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhh-----hhHHHHHHH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-----HMLDSMMMK 187 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~-----~~~~~~~~~ 187 (363)
+..+|+++|++|||||||+|+|++.. ...+.+.+++|.......+. + .+.+|||||+..... ..+.. ...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~--~-~~~l~Dt~G~~~~~~~~~~~~~~~~-~~~ 100 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA--D-GKRLVDLPGYGYAEVPEEMKRKWQR-ALG 100 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE--T-TEEEEECCCCC------CCHHHHHH-HHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec--C-CEEEEECcCCcccccCHHHHHHHHH-HHH
Confidence 45589999999999999999999876 33345566666543222222 2 688999999743110 01111 111
Q ss_pred HHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHH----HHHHHHHHhcCCCCcEEEc
Q 017937 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI----AKKLEWYEKFTDVDEVIPV 263 (363)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~i~~v 263 (363)
.+......++++++|+|++.+.......+..++.. .+.|+++|+||+|+.+..+. ......+........++++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEE
Confidence 22222467899999999988765444444444444 57899999999999875432 2223333333334578999
Q ss_pred ccCCCCCHHHHHHHHHhhCCCCC
Q 017937 264 SAKYGHGVEDIRDWILTKLPLGP 286 (363)
Q Consensus 264 SAk~g~gi~eL~~~i~~~l~~~~ 286 (363)
||+++.|+++++++|.+.+..++
T Consensus 179 Sal~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 179 SSLKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp BTTTTBSHHHHHHHHHHHHC---
T ss_pred eecCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999887654
No 161
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.78 E-value=9.1e-20 Score=163.89 Aligned_cols=87 Identities=17% Similarity=0.116 Sum_probs=61.8
Q ss_pred ccceEEEEeeCCCC--C--chHHHHHHHhccc-cCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 195 NADCIVVLVDACKA--P--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 195 ~ad~ii~VvD~~~~--~--~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
+||++|+|+|++++ . .....|+...... ...+.|+++|+||+|+.....+.+........ ...+++++||++|.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-~~~~~~e~SAk~g~ 240 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSK-KNLQVVETSARSNV 240 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTS-SSCCEEECBTTTTB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhc-CCCeEEEEECCCCC
Confidence 69999999999875 2 3344444443322 12579999999999998766654433333332 23489999999999
Q ss_pred CHHHHHHHHHhhC
Q 017937 270 GVEDIRDWILTKL 282 (363)
Q Consensus 270 gi~eL~~~i~~~l 282 (363)
|++++|++|.+.+
T Consensus 241 gv~elf~~l~~~l 253 (255)
T 3c5h_A 241 NVDLAFSTLVQLI 253 (255)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 162
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.77 E-value=4.1e-19 Score=176.14 Aligned_cols=160 Identities=20% Similarity=0.252 Sum_probs=99.4
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceE-EEEEE------EE----eCCCeeEEEEeCCCCchhhhhhH
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILG------IC----SGPEYQMILYDTPGIIEKKIHML 181 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~-~~~~~------~~----~~~~~~i~l~DtpG~~~~~~~~~ 181 (363)
.+..+|+++|.+|||||||+|+|++..+. .....+.. ..... .+ ...+..+.+|||||. ..+..+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~--~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~--e~~~~~ 114 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD--PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQ--EIMHAS 114 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSC--CTTTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcH--HHHHHH
Confidence 35569999999999999999999998764 11211211 11111 11 123578999999994 444444
Q ss_pred HHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCc
Q 017937 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDE 259 (363)
Q Consensus 182 ~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~ 259 (363)
...+ ++.+|++|+|+|+++. .....|+.. +.....+.|+++|+||+|+..... .......+.. .+ .+
T Consensus 115 ~~~~-------l~~~d~ii~V~D~s~~-~~~~~~~~~-l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~-~~-~~ 183 (535)
T 3dpu_A 115 HQFF-------MTRSSVYMLLLDSRTD-SNKHYWLRH-IEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPA-IE-NR 183 (535)
T ss_dssp CHHH-------HHSSEEEEEEECGGGG-GGHHHHHHH-HHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGG-GT-TC
T ss_pred HHHH-------ccCCcEEEEEEeCCCc-hhHHHHHHH-HHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHh-cC-Cc
Confidence 3333 6689999999999864 344444433 333335699999999999975433 2222233222 22 36
Q ss_pred EEEcccCCCCCHHHHHHHHHhhCCCCCC
Q 017937 260 VIPVSAKYGHGVEDIRDWILTKLPLGPA 287 (363)
Q Consensus 260 i~~vSAk~g~gi~eL~~~i~~~l~~~~~ 287 (363)
++++||++|.|+++|+++|.+.+...+.
T Consensus 184 ~~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 184 FHRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp EEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred eEEEecCcccCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999877654
No 163
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.77 E-value=1.8e-18 Score=158.69 Aligned_cols=158 Identities=15% Similarity=0.091 Sum_probs=102.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhh--HHHHHHHHHHhhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM--LDSMMMKNVRSAGI 194 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~--~~~~~~~~~~~~~~ 194 (363)
||+++|..|||||||++++.+..+.......+.|.......+ ....++.+||||| ++.+.. + ....+++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-~~~v~LqIWDTAG--QErf~~~~l------~~~~yyr 71 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPG--QLNYFEPSY------DSERLFK 71 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-CSSSCEEEEECCS--CSSSCCCSH------HHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-ccEEEEEEEECCC--chhccchhh------hhhhhcc
Confidence 589999999999999999876543321112222221111122 2348899999999 444421 1 1234578
Q ss_pred ccceEEEEeeCCCCCchHHHHHHHhcc---ccCCCCCEEEEEcCCCCCChhH-------HHH-HHHHHHhc---CCCCcE
Q 017937 195 NADCIVVLVDACKAPERIDEILEEGVG---DHKDKLPILLVLNKKDLIKPGE-------IAK-KLEWYEKF---TDVDEV 260 (363)
Q Consensus 195 ~ad~ii~VvD~~~~~~~~~~~~~~~~~---~~~~~~piilV~NK~Dl~~~~~-------~~~-~~~~~~~~---~~~~~i 260 (363)
+++++|+|+|+++.......++.+++. ....+.|+++|+||+|+..... +.. ..+.+.+. ....++
T Consensus 72 ~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f 151 (331)
T 3r7w_B 72 SVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSF 151 (331)
T ss_dssp TCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEE
T ss_pred CCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceE
Confidence 999999999999875444445543332 2236799999999999986532 211 11222222 123579
Q ss_pred EEcccCCCCCHHHHHHHHHhhCCC
Q 017937 261 IPVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 261 ~~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
++|||++ .||.+.|..|++.+.+
T Consensus 152 ~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 152 YLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp ECCCSSS-SHHHHHHHHHHTTSST
T ss_pred EEeccCC-CcHHHHHHHHHHHHHh
Confidence 9999998 5999999999987754
No 164
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.77 E-value=9.5e-19 Score=171.27 Aligned_cols=150 Identities=18% Similarity=0.141 Sum_probs=100.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce------------------------------ecCCCCceEEEEEEEEeCCCe
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI------------------------------VTNKPQTTRHRILGICSGPEY 163 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~ 163 (363)
...+|+++|++|+|||||+++|++..... .....+.|.+.....+...+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 34589999999999999999998652111 122346666666666777889
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCC-------CchHHHHHHHhccccCCCCCEEEEEcCC
Q 017937 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKK 236 (363)
Q Consensus 164 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~-------~~~~~~~~~~~~~~~~~~~piilV~NK~ 236 (363)
.+.+|||||+.+ +...+..++..+|++|+|+|++++ ...+.......+... ...|+++|+||+
T Consensus 112 ~~~iiDTPG~~~---------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~ 181 (483)
T 3p26_A 112 NFTIVDAPGHRD---------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKM 181 (483)
T ss_dssp EEEEECCCCCGG---------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECG
T ss_pred eEEEEECCCcHH---------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECc
Confidence 999999999632 234455668899999999999886 234444444444431 235799999999
Q ss_pred CCCCh--hHHHHHHHHHH----hcC---CCCcEEEcccCCCCCHHH
Q 017937 237 DLIKP--GEIAKKLEWYE----KFT---DVDEVIPVSAKYGHGVED 273 (363)
Q Consensus 237 Dl~~~--~~~~~~~~~~~----~~~---~~~~i~~vSAk~g~gi~e 273 (363)
|+.+. ....+....+. ... ...+++++||++|.|+++
T Consensus 182 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 182 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred CcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 99862 22222222222 111 135799999999999975
No 165
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.77 E-value=3.8e-18 Score=164.88 Aligned_cols=149 Identities=21% Similarity=0.177 Sum_probs=98.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcccccee----------cCCC----------------------CceEEEEEEEEeCCC
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV----------TNKP----------------------QTTRHRILGICSGPE 162 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~----------~~~~----------------------~~t~~~~~~~~~~~~ 162 (363)
..+|+++|++|+|||||+++|++...... +..+ +.|.+.....+...+
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 35899999999999999999987642211 1112 233333344456677
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCC-CEEEEEcCCCCCCh
Q 017937 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDLIKP 241 (363)
Q Consensus 163 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~-piilV~NK~Dl~~~ 241 (363)
..+.+|||||+.+ + ...+..++..+|++|+|+|++++...+...+...+.. .+. |+++|+||+|+.+.
T Consensus 104 ~~~~iiDtpGh~~--f-------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~--~~~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 104 RKFIIADTPGHEQ--Y-------TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL--LGIKHIVVAINKMDLNGF 172 (434)
T ss_dssp EEEEEEECCCSGG--G-------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEEECTTTTTS
T ss_pred ceEEEEECCChHH--H-------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEEcCcCCcc
Confidence 8999999999632 2 1234455789999999999998876555544444444 344 69999999999862
Q ss_pred --hHHHHH---HHHHHhcCC----CCcEEEcccCCCCCHHHH
Q 017937 242 --GEIAKK---LEWYEKFTD----VDEVIPVSAKYGHGVEDI 274 (363)
Q Consensus 242 --~~~~~~---~~~~~~~~~----~~~i~~vSAk~g~gi~eL 274 (363)
...... ...+....+ ..+++++||++|.|++++
T Consensus 173 ~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 173 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred cHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 222222 222222222 257999999999999873
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.77 E-value=2.4e-18 Score=148.45 Aligned_cols=157 Identities=21% Similarity=0.220 Sum_probs=101.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEe--CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
..+|+++|++|||||||+++|.+..+... ..+..+.....+.+. +....+.+|||||. ..+..+. ..+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~--~~~~~~~-------~~~ 74 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ--ERYRRIT-------SAY 74 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSG--GGTTCCC-------HHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEECCCc--hhhhhhh-------HHH
Confidence 35899999999999999999999876532 222222222233333 33357889999994 3333222 223
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCcEEEcccCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
+..++++++|+|+++.. .....|+.........+.|+++|+||+|+..... ...... +....+ ..++.+||+++
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~-l~~~~~-~~~~d~Sal~~ 152 (199)
T 2f9l_A 75 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARA-FAEKNN-LSFIETSALDS 152 (199)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHH-HHHHTT-CEEEECCTTTC
T ss_pred HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHH-HHHHcC-CeEEEEeCCCC
Confidence 57899999999998643 2222333322221125689999999999964321 122222 222233 47899999999
Q ss_pred CCHHHHHHHHHhhCC
Q 017937 269 HGVEDIRDWILTKLP 283 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (363)
.|+++++++|.+.+.
T Consensus 153 ~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 153 TNVEEAFKNILTEIY 167 (199)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 167
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.77 E-value=7.2e-19 Score=175.06 Aligned_cols=157 Identities=21% Similarity=0.259 Sum_probs=105.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCC-CceEEEEEEEEe------------------CCCeeEEEEeCCCCc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICS------------------GPEYQMILYDTPGII 174 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~-~~t~~~~~~~~~------------------~~~~~i~l~DtpG~~ 174 (363)
+.++|+++|++|+|||||+++|++..+. ...+ +.|.......+. .....+.+|||||+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~--~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA--SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS--CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc--cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 6779999999999999999999987553 2222 233221111110 112359999999963
Q ss_pred hhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh------------
Q 017937 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG------------ 242 (363)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~------------ 242 (363)
.+..+ ...++..+|++|+|+|++++...........++. .+.|+++|+||+|+....
T Consensus 82 --~F~~~-------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~s 150 (594)
T 1g7s_A 82 --AFTTL-------RKRGGALADLAILIVDINEGFKPQTQEALNILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETF 150 (594)
T ss_dssp --CCTTS-------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHH
T ss_pred --HHHHH-------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCCeEEEEecccccccccccccCCchHHHH
Confidence 33332 2234788999999999999876666555555555 689999999999996421
Q ss_pred -----HH--------HHHHHHHHhc-------------CCCCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 243 -----EI--------AKKLEWYEKF-------------TDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 243 -----~~--------~~~~~~~~~~-------------~~~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
.+ .+....+... ....+++++||++|.|+++|+++|...++
T Consensus 151 a~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 151 SKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 11 1111122111 23348999999999999999999998764
No 168
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.75 E-value=4.8e-19 Score=166.71 Aligned_cols=185 Identities=18% Similarity=0.230 Sum_probs=115.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc------cccceecCCCCceEEE-------E----------EE--------------
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTTRHR-------I----------LG-------------- 156 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~------~~~~~~~~~~~~t~~~-------~----------~~-------------- 156 (363)
+.++|+++|.+|||||||+++|.. .++..+...+..+... . ..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 455899999999999999999863 3333333333222200 0 00
Q ss_pred --------EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCC
Q 017937 157 --------ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (363)
Q Consensus 157 --------~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~p 228 (363)
.+...++.+.+|||||+.+... ..+..+|++++|+|+...... ..+ .......|
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~------------~~~~~aD~vl~V~d~~~~~~~--~~l----~~~~~~~p 219 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQSEV------------AVANMVDTFVLLTLARTGDQL--QGI----KKGVLELA 219 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSHHH------------HHHTTCSEEEEEEESSTTCTT--TTC----CTTSGGGC
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcHHH------------HHHHhCCEEEEEECCCCCccH--HHH----HHhHhhcC
Confidence 0122467899999999743211 124789999999998754322 111 11113469
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHh----c-----CCCCcEEEcccCCCCCHHHHHHHHHhhCCC--CCCCCCCCCCCCc
Q 017937 229 ILLVLNKKDLIKPGEIAKKLEWYEK----F-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL--GPAYYPKDIVSEH 297 (363)
Q Consensus 229 iilV~NK~Dl~~~~~~~~~~~~~~~----~-----~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~--~~~~~~~~~~~~~ 297 (363)
+++|+||+|+............+.. . ....+++++||++|.|+++|+++|.+.++. .+..++. . ...
T Consensus 220 ~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~~~~~~~~~-~-r~~ 297 (355)
T 3p32_A 220 DIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVLTGAGEFDA-R-RRD 297 (355)
T ss_dssp SEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHHHHTTHHHH-H-HHH
T ss_pred CEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHhhcCchHHH-H-HHH
Confidence 9999999999765443333222222 1 113579999999999999999999988754 2222222 1 112
Q ss_pred hHHHHHHHHHHHHHHhhccCC
Q 017937 298 PERFFVGEIIREKIFMQYRNE 318 (363)
Q Consensus 298 ~~~~~~~eiire~i~~~~~~e 318 (363)
..++++.+++|++++..+...
T Consensus 298 ~~~~~~~e~i~e~l~~~~~~~ 318 (355)
T 3p32_A 298 QQVDWTWQLVRDAVLDRVWSN 318 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 355678899999998877543
No 169
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.75 E-value=5.1e-18 Score=163.95 Aligned_cols=150 Identities=20% Similarity=0.245 Sum_probs=95.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce------------------------------ecCCCCceEEEEEEEEeCCCe
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI------------------------------VTNKPQTTRHRILGICSGPEY 163 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~ 163 (363)
...+|+++|++|+|||||+++|++..... .....+.|.+.....+...+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 44589999999999999999998642110 011356666665556777788
Q ss_pred eEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCC-------CchHHHHHHHhccccCCC-CCEEEEEcC
Q 017937 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDK-LPILLVLNK 235 (363)
Q Consensus 164 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~-------~~~~~~~~~~~~~~~~~~-~piilV~NK 235 (363)
.+.+|||||+.+ + ...+..++..+|++|+|+|++++ ...+.......+.. .+ .|+++|+||
T Consensus 85 ~~~iiDtpG~~~--f-------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~--~~~~~iivviNK 153 (435)
T 1jny_A 85 FFTIIDAPGHRD--F-------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT--MGLDQLIVAVNK 153 (435)
T ss_dssp EEEECCCSSSTT--H-------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH--TTCTTCEEEEEC
T ss_pred EEEEEECCCcHH--H-------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEEc
Confidence 999999999643 2 23456678999999999999986 33344444443333 34 469999999
Q ss_pred CCCCCh----hHHH----HHHHHHHhcC---CCCcEEEcccCCCCCHHHH
Q 017937 236 KDLIKP----GEIA----KKLEWYEKFT---DVDEVIPVSAKYGHGVEDI 274 (363)
Q Consensus 236 ~Dl~~~----~~~~----~~~~~~~~~~---~~~~i~~vSAk~g~gi~eL 274 (363)
+|+.+. .... +....+.... ...+++++||++|.|+.++
T Consensus 154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 154 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 999862 2212 2222222221 1257999999999999743
No 170
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.74 E-value=1.3e-17 Score=169.48 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=80.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce-----------ecC------CCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~ 176 (363)
+..+|+|+|++|+|||||+++|+...... +.+ ..+.|.......+.+.+..+++|||||+.+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d- 89 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD- 89 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT-
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc-
Confidence 45689999999999999999998432110 011 233444433444556689999999999643
Q ss_pred hhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCCh
Q 017937 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 241 (363)
+ ...+..++..+|++|+|+|++++.......++..+.. .+.|+++|+||+|+...
T Consensus 90 -f-------~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 -F-------TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp -C-------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTC
T ss_pred -h-------HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCcccC
Confidence 2 1234555788999999999998876665555555544 68999999999999753
No 171
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.74 E-value=2.7e-19 Score=167.84 Aligned_cols=186 Identities=22% Similarity=0.329 Sum_probs=113.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc------ccceecCCCCceE--------------------EEE-----E----EE--
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQTTR--------------------HRI-----L----GI-- 157 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~------~~~~~~~~~~~t~--------------------~~~-----~----~~-- 157 (363)
.+.|+|+|.||||||||+|+|++. +..+....+.+.. ..+ . +.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 568999999999999999999862 2232333322211 000 0 00
Q ss_pred --------EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCE
Q 017937 158 --------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI 229 (363)
Q Consensus 158 --------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~pi 229 (363)
+...+..+.++||||+.+.. . .....+|++++|+|++.+... ..+...+ ...|.
T Consensus 154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~~-~-----------~l~~~~d~vl~V~d~~~~~~~--~~i~~~i----l~~~~ 215 (349)
T 2www_A 154 TTNEAILLCEGAGYDIILIETVGVGQSE-F-----------AVADMVDMFVLLLPPAGGDEL--QGIKRGI----IEMAD 215 (349)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCC--CH-H-----------HHHTTCSEEEEEECCC------------------CCSCS
T ss_pred HHHHHHHhhccCCCCEEEEECCCcchhh-h-----------hHHhhCCEEEEEEcCCcchhH--HHhHHHH----HhcCC
Confidence 11356789999999974321 1 124689999999999865321 1111111 24688
Q ss_pred EEEEcCCCCCChhHHHHHHHHH----Hhc-----CCCCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCc---
Q 017937 230 LLVLNKKDLIKPGEIAKKLEWY----EKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEH--- 297 (363)
Q Consensus 230 ilV~NK~Dl~~~~~~~~~~~~~----~~~-----~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~--- 297 (363)
++|+||+|+.+..........+ ... ....+++++||++|.|+++|+++|.+.+.. .++...+++.
T Consensus 216 ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~---~~~~~~~~~~R~~ 292 (349)
T 2www_A 216 LVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL---MLASGELTAKRRK 292 (349)
T ss_dssp EEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH---HHHHSHHHHHHHH
T ss_pred EEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH---HhhCchHHHHHHH
Confidence 9999999997543322212222 111 113478999999999999999999987643 2333334433
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCC
Q 017937 298 PERFFVGEIIREKIFMQYRNEVPY 321 (363)
Q Consensus 298 ~~~~~~~eiire~i~~~~~~evp~ 321 (363)
..++++.++++++++..+..++|+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~ 316 (349)
T 2www_A 293 QQKVWMWNLIQESVLEHFRTHPTV 316 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcch
Confidence 566788999999999877777664
No 172
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.74 E-value=2.9e-17 Score=167.07 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=81.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce-----------ecC------CCCceEEEEEEEEeCCC-------eeEEEEe
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPE-------YQMILYD 169 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~-------~~i~l~D 169 (363)
+..+|+|+|+.|+|||||+++|+...... ..+ ..+.|.......+.+.+ +.++|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 45699999999999999999997532110 111 23344433333344444 8999999
Q ss_pred CCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCCh
Q 017937 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (363)
Q Consensus 170 tpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 241 (363)
|||+.+ + ...+..+++.+|++|+|+|++++.......++..+.. .+.|+++|+||+|+...
T Consensus 89 TPG~~d--f-------~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~--~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 89 TPGHVD--F-------TIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK--YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred CCCccc--h-------HHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCEEEEEeCCCcccc
Confidence 999643 2 2234556788999999999998876555555555444 67999999999998643
No 173
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.73 E-value=3.2e-18 Score=169.23 Aligned_cols=226 Identities=15% Similarity=0.094 Sum_probs=140.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccc---------------eecCC------CCceEEEEEEEEeCCCeeEEEEeCCC
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNK------PQTTRHRILGICSGPEYQMILYDTPG 172 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~---------------~~~~~------~~~t~~~~~~~~~~~~~~i~l~DtpG 172 (363)
|..+|+|+|+.++|||||..+|+..... .+++. .+.|.......+.++++.++|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 4458999999999999999999732211 01111 12222222334667889999999999
Q ss_pred CchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhH---HHHHHH
Q 017937 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLE 249 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~ 249 (363)
+.+.. ..+.+.++-+|++|+|+|+..+.+.+...+++.+.. .++|.++++||+|+...+. +.++.+
T Consensus 110 HvDF~---------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~--~~lp~i~fINK~Dr~~ad~~~~~~~i~~ 178 (548)
T 3vqt_A 110 HQDFS---------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM--RATPVMTFVNKMDREALHPLDVMADIEQ 178 (548)
T ss_dssp GGGCS---------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSCCCCHHHHHHHHHH
T ss_pred cHHHH---------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH--hCCceEEEEecccchhcchhHhhhhhhh
Confidence 76643 234556889999999999999999999888888877 7899999999999864321 111111
Q ss_pred HHH-----------------------------------------------------------------------------
Q 017937 250 WYE----------------------------------------------------------------------------- 252 (363)
Q Consensus 250 ~~~----------------------------------------------------------------------------- 252 (363)
.+.
T Consensus 179 ~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (548)
T 3vqt_A 179 HLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPF 258 (548)
T ss_dssp HHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCC
T ss_pred hcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCch
Confidence 110
Q ss_pred -----hcCCCCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCC---CCchHHHHHHHHHHHHHHhh----ccCCCC
Q 017937 253 -----KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIV---SEHPERFFVGEIIREKIFMQ----YRNEVP 320 (363)
Q Consensus 253 -----~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~---~~~~~~~~~~eiire~i~~~----~~~evp 320 (363)
......|++..||++|.|+..|++.|.+.+|........... .+.|... .++.. ..+..|
T Consensus 259 ~~e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a--------~vfKi~~~~~~~~~G 330 (548)
T 3vqt_A 259 DEERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTG--------VVFKIQANMDKAHRD 330 (548)
T ss_dssp CHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEE--------EEEEEECC-------
T ss_pred hHHHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCccccccccCCCCcCceE--------EEEEEEccCCcCCCC
Confidence 011235789999999999999999999999864221100000 0111000 01111 124577
Q ss_pred CceEEEEEEEEecCCCeeEEEEEEEEeeCCceeEEecC
Q 017937 321 YACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGK 358 (363)
Q Consensus 321 ~s~~i~~~~~~~~~~~~~~i~~~i~~~~~~q~~ivig~ 358 (363)
..+.+++.+++...+..+++...-.-++-++.+++.|.
T Consensus 331 rla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~ 368 (548)
T 3vqt_A 331 RMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQ 368 (548)
T ss_dssp CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCS
T ss_pred eEEEEEEecceecCCCEEEeeccccccccchhhhhccc
Confidence 78999999999887765544222223445555555543
No 174
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.73 E-value=3.3e-17 Score=170.31 Aligned_cols=161 Identities=18% Similarity=0.204 Sum_probs=108.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccccc-------e--------ecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS-------I--------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~~~-------~--------~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~ 177 (363)
....+|+++|++|+|||||+++|++.... . .....+.|.+.....+...+..+.+|||||+ ..
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH--ed 371 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH--AD 371 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCH--HH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCCh--HH
Confidence 34568999999999999999999874110 0 0123344444333345566789999999995 33
Q ss_pred hhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCC-EEEEEcCCCCCChhH-HH----HHHHHH
Q 017937 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGE-IA----KKLEWY 251 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~~~-~~----~~~~~~ 251 (363)
+...+..++..+|++|+|+|++++...+...+...+.. .++| +|+|+||+|+....+ .. +....+
T Consensus 372 -------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~--lgIP~IIVVINKiDLv~d~e~le~i~eEi~elL 442 (1289)
T 3avx_A 372 -------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ--VGVPYIIVFLNKCDMVDDEELLELVEMEVRELL 442 (1289)
T ss_dssp -------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH--HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH--cCCCeEEEEEeecccccchhhHHHHHHHHHHHH
Confidence 23455667899999999999998765555444444444 4678 799999999985322 11 222223
Q ss_pred HhcC---CCCcEEEcccCCC--------CCHHHHHHHHHhhCCC
Q 017937 252 EKFT---DVDEVIPVSAKYG--------HGVEDIRDWILTKLPL 284 (363)
Q Consensus 252 ~~~~---~~~~i~~vSAk~g--------~gi~eL~~~i~~~l~~ 284 (363)
.... ...+++++||++| .|+++|+++|.+.++.
T Consensus 443 k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 443 SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 2221 2358999999999 5799999999998864
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.73 E-value=4.5e-17 Score=160.39 Aligned_cols=117 Identities=22% Similarity=0.265 Sum_probs=82.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce---------------ec------CCCCceEEEEEEEEeCCCeeEEEEeCCC
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VT------NKPQTTRHRILGICSGPEYQMILYDTPG 172 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~---------------~~------~~~~~t~~~~~~~~~~~~~~i~l~DtpG 172 (363)
+..+|+++|++|+|||||+++|++..... +. ...+.|.......+.+.+..+++|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 44589999999999999999998642111 00 1122222222234556778999999999
Q ss_pred CchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCCh
Q 017937 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (363)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 241 (363)
+.+ +. ..+..++..+|++|+|+|++++.......+...+.. .+.|+++|+||+|+...
T Consensus 92 ~~d--f~-------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~--~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 92 HED--FS-------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL--RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp STT--CC-------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT--TTCCEEEEEECTTSCCS
T ss_pred Chh--HH-------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH--cCCCEEEEEcCcCCccc
Confidence 633 22 234556889999999999999887777666666655 67999999999999753
No 176
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.73 E-value=7.5e-18 Score=171.27 Aligned_cols=162 Identities=22% Similarity=0.218 Sum_probs=108.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCc--------------eEEEEEE----E---------EeCCC----
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT--------------TRHRILG----I---------CSGPE---- 162 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~--------------t~~~~~~----~---------~~~~~---- 162 (363)
...+|+|+|.+|+|||||+|+|+|..+..++..|+| |+....+ . +...+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 445899999999999999999999987777777766 2211000 0 00000
Q ss_pred --------------------------eeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHH-H
Q 017937 163 --------------------------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDE-I 215 (363)
Q Consensus 163 --------------------------~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~-~ 215 (363)
..+.+|||||+.... . ....+..++..+|++|||+|++++...... .
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~--~----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~ 221 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE--A----RNELSLGYVNNCHAILFVMRASQPCTLGERRY 221 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH--T----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh--h----HHHHHHHHHHhCCEEEEEEeCCCccchhHHHH
Confidence 469999999974321 1 223455668899999999999887654433 2
Q ss_pred HHHhccccCCCCCEEEEEcCCCCCChh--------HHHH----HH----HHHHhcC-------CCCcEEEcccC------
Q 017937 216 LEEGVGDHKDKLPILLVLNKKDLIKPG--------EIAK----KL----EWYEKFT-------DVDEVIPVSAK------ 266 (363)
Q Consensus 216 ~~~~~~~~~~~~piilV~NK~Dl~~~~--------~~~~----~~----~~~~~~~-------~~~~i~~vSAk------ 266 (363)
+...+.. .+.|+++|+||+|+.... .+.. .. ..+.... ...++++|||+
T Consensus 222 l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~ 299 (695)
T 2j69_A 222 LENYIKG--RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRR 299 (695)
T ss_dssp HHHHTTT--SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred HHHHHHh--hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhh
Confidence 3334443 467899999999996543 1111 11 1122211 12479999999
Q ss_pred --------CCCCHHHHHHHHHhhCC
Q 017937 267 --------YGHGVEDIRDWILTKLP 283 (363)
Q Consensus 267 --------~g~gi~eL~~~i~~~l~ 283 (363)
+|.|+++++++|.+.+.
T Consensus 300 ~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 300 LKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred ccCchhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988774
No 177
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.72 E-value=1.9e-17 Score=142.05 Aligned_cols=156 Identities=21% Similarity=0.201 Sum_probs=100.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhhhhhHHHHHHHHHHhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 192 (363)
..+|+++|++|||||||+++|.+..+.. ...+..+.+...+.+...+ ..+.+|||||.. .+..+ +..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~--~~~~~-------~~~~ 98 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE--RYRAI-------TSAY 98 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEETTEEEEEEEEEECSCC--SSSCC-------CHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEECCCCc--chhhh-------hHHH
Confidence 3589999999999999999999987653 2233333333333333333 456789999953 22222 1223
Q ss_pred ccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhH--HHHHHHHHHhcCCCCcEEEcccCCC
Q 017937 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
+..++++++|+|.++.. .....|+.........+.|+++|+||+|+..... .... ..+....+ ..++.+||+++
T Consensus 99 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a-~~l~~~~~-~~~ld~Sald~ 176 (191)
T 1oix_A 99 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEA-RAFAEKNG-LSFIETSALDS 176 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHH-HHHHHHTT-CEEEECCTTTC
T ss_pred hhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHH-HHHHHHcC-CEEEEEeCCCC
Confidence 57889999999987643 2222333322221124689999999999864321 1222 22222233 47899999999
Q ss_pred CCHHHHHHHHHhhC
Q 017937 269 HGVEDIRDWILTKL 282 (363)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (363)
.|+++++++|.+.+
T Consensus 177 ~~v~~l~~~l~~~i 190 (191)
T 1oix_A 177 TNVEAAFQTILTEI 190 (191)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998754
No 178
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=8.4e-18 Score=146.98 Aligned_cols=144 Identities=17% Similarity=0.204 Sum_probs=85.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccccee--cCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+.++|+++|++|||||||+++|.+..+... +..+.++. ......+.+|||||+ ..+......+ +..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~--~~~~~~~~~~---~~~ 78 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGH--VKLRYKLSDY---LKT 78 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-------TGGGSSCEEEECCCC--GGGTHHHHHH---HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-------EeeCceEEEEECCCc--HHHHHHHHHH---HHh
Confidence 556999999999999999999998775421 11221111 124578999999996 3333222222 222
Q ss_pred hccccceEEEEeeCC---CCCchHHHHHHHhccc----cCCCCCEEEEEcCCCCCChhHHHHH-------HHHHHhcCCC
Q 017937 192 AGINADCIVVLVDAC---KAPERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIAKK-------LEWYEKFTDV 257 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~---~~~~~~~~~~~~~~~~----~~~~~piilV~NK~Dl~~~~~~~~~-------~~~~~~~~~~ 257 (363)
....+|++|+|+|++ ........++...+.. ...+.|+++|+||+|+.....+... ...+....+
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~- 157 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK- 157 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh-
Confidence 234589999999998 3445555666555432 2257999999999999865433211 122211111
Q ss_pred CcEEEcccCCCCC
Q 017937 258 DEVIPVSAKYGHG 270 (363)
Q Consensus 258 ~~i~~vSAk~g~g 270 (363)
.+++++||++|.+
T Consensus 158 ~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 158 KSLNEVERKINEE 170 (218)
T ss_dssp HHHHC--------
T ss_pred ccccccccccccc
Confidence 3689999998875
No 179
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.70 E-value=6.9e-17 Score=164.13 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=81.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce-----------ecC------CCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~ 176 (363)
+..+|+|+|++|+|||||+|+|++..... +.+ .+++|.......+.+.+..+++|||||+.+
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d- 87 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD- 87 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS-
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc-
Confidence 55699999999999999999998532110 111 234444444445566789999999999743
Q ss_pred hhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCCh
Q 017937 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 241 (363)
+. ..+..+++.+|++|+|+|++++.......++..+.. .+.|+++|+||+|+...
T Consensus 88 -f~-------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~--~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 -FT-------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT--YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp -CC-------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTC
T ss_pred -hH-------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH--cCCCEEEEEECCCcccc
Confidence 21 223455778999999999998876665555555554 67999999999999753
No 180
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.70 E-value=1e-17 Score=156.75 Aligned_cols=184 Identities=18% Similarity=0.268 Sum_probs=112.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc------cccceecCCCCceEE--------------------EEEEE----------
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTTRH--------------------RILGI---------- 157 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~------~~~~~~~~~~~~t~~--------------------~~~~~---------- 157 (363)
+...|+++|.+|+|||||+|+|.+ .+...+...++++.. .+...
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 445899999999999999999963 344444444443321 00000
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCC
Q 017937 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (363)
Q Consensus 158 ---------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~p 228 (363)
+...++.+.+|||||+.+... .....+|++++|+|++.+... ..++....+.|
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~~~------------~~~~~aD~vl~Vvd~~~~~~~------~~l~~~~~~~p 196 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQSET------------EVARMVDCFISLQIAGGGDDL------QGIKKGLMEVA 196 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTHHH------------HHHTTCSEEEEEECC------------CCCCHHHHHHC
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccchHH------------HHHHhCCEEEEEEeCCccHHH------HHHHHhhhccc
Confidence 013467899999999754221 024789999999998754210 11110002468
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHH----hcCC-----CCcEEEcccCCCCCHHHHHHHHHhhCC---CCCCCCCCCCCCC
Q 017937 229 ILLVLNKKDLIKPGEIAKKLEWYE----KFTD-----VDEVIPVSAKYGHGVEDIRDWILTKLP---LGPAYYPKDIVSE 296 (363)
Q Consensus 229 iilV~NK~Dl~~~~~~~~~~~~~~----~~~~-----~~~i~~vSAk~g~gi~eL~~~i~~~l~---~~~~~~~~~~~~~ 296 (363)
.++|+||+|+............+. .... ..+++++||++|.|+++|+++|.+.+. .++ .++ +...
T Consensus 197 ~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~~~-~~~-~~r~- 273 (341)
T 2p67_A 197 DLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASG-RLQ-QVRQ- 273 (341)
T ss_dssp SEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHHTT-HHH-HHHH-
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHhCC-hHH-HHHH-
Confidence 899999999987544433222222 1111 347899999999999999999998764 221 222 1111
Q ss_pred chHHHHHHHHHHHHHHhhccCC
Q 017937 297 HPERFFVGEIIREKIFMQYRNE 318 (363)
Q Consensus 297 ~~~~~~~~eiire~i~~~~~~e 318 (363)
...+.++.|.+++.++..+..+
T Consensus 274 ~~~~~~~~e~i~e~l~~~~~~~ 295 (341)
T 2p67_A 274 QQSVEWLRKQTEEEVLNHLFAN 295 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 2255677888999998887664
No 181
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.70 E-value=1.7e-16 Score=160.67 Aligned_cols=115 Identities=23% Similarity=0.163 Sum_probs=82.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce-----------ecC------CCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~ 176 (363)
+..+|+|+|++|+|||||+++|++..... ..+ ..+.|.......+......+++|||||+.+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~- 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD- 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG-
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc-
Confidence 44589999999999999999998543221 000 113333333444555678999999999643
Q ss_pred hhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC
Q 017937 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (363)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 239 (363)
+. ..+..+++.+|++++|+|++++.......+...+.. .+.|+++|+||+|+.
T Consensus 87 -f~-------~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 -FV-------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp -GH-------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECGGGC
T ss_pred -hH-------HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH--ccCCEEEEecCCchh
Confidence 21 234556788999999999998887766666666655 679999999999987
No 182
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.69 E-value=2.4e-17 Score=160.46 Aligned_cols=150 Identities=19% Similarity=0.167 Sum_probs=88.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccc------------------------eecC------CCCceEEEEEEEEeCCCee
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLS------------------------IVTN------KPQTTRHRILGICSGPEYQ 164 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~------------------------~~~~------~~~~t~~~~~~~~~~~~~~ 164 (363)
..+|+++|++++|||||+++|++.... .+.+ ..+.|.+.....+...+..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 358999999999999999999752210 0111 2345555444456667789
Q ss_pred EEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCc-------hHHHHHHHhccccCCCCC-EEEEEcCC
Q 017937 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-------RIDEILEEGVGDHKDKLP-ILLVLNKK 236 (363)
Q Consensus 165 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~-------~~~~~~~~~~~~~~~~~p-iilV~NK~ 236 (363)
+.+|||||+. . +...+...+..+|++|+|+|++++.. .+.......+.. .+.| +++|+||+
T Consensus 123 ~~iiDtPGh~--~-------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~ 191 (467)
T 1r5b_A 123 FSLLDAPGHK--G-------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKM 191 (467)
T ss_dssp EEECCCCC--------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECT
T ss_pred EEEEECCCcH--H-------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECc
Confidence 9999999963 2 23345556889999999999998631 222233333333 5677 99999999
Q ss_pred CCCC----hhHHH----HHHHHHHhc-C-C---CCcEEEcccCCCCCHHHHH
Q 017937 237 DLIK----PGEIA----KKLEWYEKF-T-D---VDEVIPVSAKYGHGVEDIR 275 (363)
Q Consensus 237 Dl~~----~~~~~----~~~~~~~~~-~-~---~~~i~~vSAk~g~gi~eL~ 275 (363)
|+.. ..... +....+... . . ..+++++||++|.|+.+++
T Consensus 192 Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 192 DEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 9964 22211 222333222 1 1 3479999999999998754
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.69 E-value=1.7e-16 Score=143.69 Aligned_cols=127 Identities=20% Similarity=0.342 Sum_probs=88.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhh-
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA- 192 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~- 192 (363)
+..+|+++|.+|+|||||+|+|++..+..++..+++|.......+...+..+.+|||||+... ..+...+...+..+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~--~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG--GYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEET--TEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCC--ccchHHHHHHHHHHh
Confidence 456999999999999999999999887667777888877666666777889999999997432 22222222333332
Q ss_pred -ccccceEEEEeeCCC-CCchHHHHHHHhcccc-CC--CCCEEEEEcCCCCCChh
Q 017937 193 -GINADCIVVLVDACK-APERIDEILEEGVGDH-KD--KLPILLVLNKKDLIKPG 242 (363)
Q Consensus 193 -~~~ad~ii~VvD~~~-~~~~~~~~~~~~~~~~-~~--~~piilV~NK~Dl~~~~ 242 (363)
...+|+++||+|++. ........+...+... .. ..|+++|+||+|+.+++
T Consensus 116 ~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 357999999988764 3344433333333221 11 26999999999997653
No 184
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.1e-16 Score=150.17 Aligned_cols=119 Identities=25% Similarity=0.283 Sum_probs=85.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 195 (363)
.+|+|+|.||||||||+|+|++.+ ..++++|++|+++..+.+...+.++.++||||+....... ......+...++.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~--~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDG--RGRGKQVIAVART 149 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-------CHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhh--hHHHHHHHHHHHh
Confidence 389999999999999999999987 4578999999999999999999999999999986543221 1122445566789
Q ss_pred cceEEEEeeCCCCCchHHHH---HHHhccccCCCCCEEEEEcCCCC
Q 017937 196 ADCIVVLVDACKAPERIDEI---LEEGVGDHKDKLPILLVLNKKDL 238 (363)
Q Consensus 196 ad~ii~VvD~~~~~~~~~~~---~~~~~~~~~~~~piilV~NK~Dl 238 (363)
||++++|+|++++....... +....... .++|.++++||+|.
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRL-NKTPPDILIKKKEK 194 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSS
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhh
Confidence 99999999998764332211 11111111 34566667777764
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.68 E-value=6.1e-17 Score=152.70 Aligned_cols=160 Identities=20% Similarity=0.178 Sum_probs=101.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEE-----------------------------------------
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH----------------------------------------- 152 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~----------------------------------------- 152 (363)
.-|+|+++|.+|||||||+|+|+|..+....... +|+.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~-vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSS-CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCc-ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 4459999999999999999999997763221111 1100
Q ss_pred --------------EEEEEEeCCCeeEEEEeCCCCchhh----hhhHHHHHHHHHHhhccccceEEEEeeCCCCC--chH
Q 017937 153 --------------RILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERI 212 (363)
Q Consensus 153 --------------~~~~~~~~~~~~i~l~DtpG~~~~~----~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~--~~~ 212 (363)
....+.......+.+|||||+.... .......+...+..++..+|++|+|+|+.+.. ...
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~ 191 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH
Confidence 0111122334579999999975431 12344455667778899999999999876433 222
Q ss_pred HHHHHHhccccCCCCCEEEEEcCCCCCChhHH-HHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHH
Q 017937 213 DEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 277 (363)
Q Consensus 213 ~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~ 277 (363)
...+...+.. .+.|+++|+||+|+...... .+........ ...+++++|++++.++++.+.+
T Consensus 192 ~~~l~~~~~~--~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 AIKISREVDP--SGDRTFGVLTKIDLMDKGTDAVEILEGRSFK-LKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHSCT--TCTTEEEEEECGGGCCTTCCSHHHHTTSSSC-CSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHhcc--cCCCEEEEEeCCccCCCcccHHHHHcCcccc-ccCCeEEEEECChHHhccCCCH
Confidence 2233333333 57899999999999864321 1212211112 2247899999999988876544
No 186
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=148.44 Aligned_cols=164 Identities=14% Similarity=0.156 Sum_probs=82.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCC--------CCceEEEEEEEEeCCC--eeEEEEeCCCCch-----hhhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK--------PQTTRHRILGICSGPE--YQMILYDTPGIIE-----KKIH 179 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~--------~~~t~~~~~~~~~~~~--~~i~l~DtpG~~~-----~~~~ 179 (363)
..+|+++|.+|+|||||+|+|.+......... +..+.......+...+ ..+.+|||||+.+ ..+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 34799999999999999999887654322111 1112222222222233 4789999999733 2233
Q ss_pred hHHHHHHHHHHhhccc-------------cceEEEEeeC-CCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH
Q 017937 180 MLDSMMMKNVRSAGIN-------------ADCIVVLVDA-CKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~~-------------ad~ii~VvD~-~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~ 245 (363)
.+..........++.. +|+++|+++. .++....+..+...+. .++|+|+|+||+|+....++.
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~ev~ 193 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKERE 193 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHHHH
Confidence 3333222222222322 3567888876 4555666655555443 579999999999999877665
Q ss_pred HHHHHH---HhcCCCCcEEEcccCCCCCHHH----HHHHHHhhCC
Q 017937 246 KKLEWY---EKFTDVDEVIPVSAKYGHGVED----IRDWILTKLP 283 (363)
Q Consensus 246 ~~~~~~---~~~~~~~~i~~vSAk~g~gi~e----L~~~i~~~l~ 283 (363)
.....+ ....+ .+++++||++|.| ++ +.+.|.+.++
T Consensus 194 ~~k~~i~~~~~~~~-i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 194 RLKKRILDEIEEHN-IKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp HHHHHHHHHTTCC--CCSCCCC----------CHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHCC-CCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 432222 22223 4789999999987 54 4455555554
No 187
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.66 E-value=3e-16 Score=149.64 Aligned_cols=164 Identities=25% Similarity=0.307 Sum_probs=112.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC-eeEEEEeCCCCchhhh--hhHHHHHHHHHHhh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKI--HMLDSMMMKNVRSA 192 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~l~DtpG~~~~~~--~~~~~~~~~~~~~~ 192 (363)
..|+|+|++|||||||+++|.+.... +...+.+|.....+.+...+ ..+.+||+||+..... ..+...+ ...
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~-i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~f----l~~ 232 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPK-IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEF----LRH 232 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCE-ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHH----HHH
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCcc-ccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHH----HHH
Confidence 36999999999999999999987653 56777777766666666554 7899999999853211 1122222 223
Q ss_pred ccccceEEEEeeCC-CCCchHHHHHHHhcccc--CCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCC
Q 017937 193 GINADCIVVLVDAC-KAPERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (363)
Q Consensus 193 ~~~ad~ii~VvD~~-~~~~~~~~~~~~~~~~~--~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~ 269 (363)
...++.+++|+|++ ++......+..+..... ....|.++|+||+|+.....+......+... ..+++.+||++++
T Consensus 233 ~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~--g~~vi~iSA~~g~ 310 (416)
T 1udx_A 233 IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALARE--GLAVLPVSALTGA 310 (416)
T ss_dssp HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEECCTTTCT
T ss_pred HHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhc--CCeEEEEECCCcc
Confidence 56899999999997 22222222222221110 0358999999999998763333333443322 2479999999999
Q ss_pred CHHHHHHHHHhhCCCCC
Q 017937 270 GVEDIRDWILTKLPLGP 286 (363)
Q Consensus 270 gi~eL~~~i~~~l~~~~ 286 (363)
|+++|+++|.+.+...+
T Consensus 311 gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 311 GLPALKEALHALVRSTP 327 (416)
T ss_dssp THHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999887544
No 188
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.66 E-value=3.6e-16 Score=140.91 Aligned_cols=125 Identities=20% Similarity=0.250 Sum_probs=88.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 193 (363)
+..+|+++|.+|+|||||+|+|++..+..++..+++|.......+...+..+.+|||||+.+ +......+.+.+..++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~--~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE--AGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEE--TTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCC--cccchHHHHHHHHHHH
Confidence 45699999999999999999999998766778888888777777777889999999999743 3333333333333333
Q ss_pred --cccceEEEEeeCCCC-CchHHHHHHHhcccc-CC--CCCEEEEEcCCCCCC
Q 017937 194 --INADCIVVLVDACKA-PERIDEILEEGVGDH-KD--KLPILLVLNKKDLIK 240 (363)
Q Consensus 194 --~~ad~ii~VvD~~~~-~~~~~~~~~~~~~~~-~~--~~piilV~NK~Dl~~ 240 (363)
..+|+++||+|++.. .......+...+... .. ..|+++|+||+|+.+
T Consensus 113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 378999999887643 343333333333221 11 249999999999963
No 189
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.63 E-value=3.9e-16 Score=133.46 Aligned_cols=125 Identities=17% Similarity=0.239 Sum_probs=77.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcccccee--cCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 191 (363)
+.++|+++|.+|||||||+|+|.+..+... +..+.++. ......+.+|||||+.. +..... ..+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~--~~~~~~---~~~~~ 114 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHVK--LRYKLS---DYLKT 114 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCB--SSCCHH---HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-------eecCCeEEEEECCCCch--HHHHHH---HHHHh
Confidence 556999999999999999999998775321 12222222 12457899999999633 222211 12233
Q ss_pred hccccceEEEEeeCC-CCC--chHHHHHHHhccc----cCCCCCEEEEEcCCCCCChhHHHHHHHH
Q 017937 192 AGINADCIVVLVDAC-KAP--ERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIAKKLEW 250 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~-~~~--~~~~~~~~~~~~~----~~~~~piilV~NK~Dl~~~~~~~~~~~~ 250 (363)
.+..+|++++|+|++ +.. .....++...+.. ...+.|+++|+||+|+.......+....
T Consensus 115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 180 (193)
T 2ged_A 115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDA 180 (193)
T ss_dssp HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHH
T ss_pred hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHH
Confidence 346699999999998 322 2233444444322 1247999999999999866554444433
No 190
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.62 E-value=2.2e-16 Score=159.11 Aligned_cols=198 Identities=17% Similarity=0.151 Sum_probs=131.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccce-----------ecCCC------CceEEEEEEEEeCCCeeEEEEeCCCCchhhh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTNKP------QTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~-----------~~~~~------~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~ 178 (363)
.+|+|+|+.++|||||..+|+.....+ +++.. +.|.......+.++++.++|+|||||.+..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~- 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL- 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH-
Confidence 379999999999999999997432111 11111 233333333466788999999999986643
Q ss_pred hhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhH---HHHHHHHH----
Q 017937 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWY---- 251 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~~~---- 251 (363)
..+.+.++-+|++|+|+|+..+.+.+...+++.+.. .++|.++++||+|+...+- +.+..+.+
T Consensus 82 --------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~--~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~ 151 (638)
T 3j25_A 82 --------AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK--MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEI 151 (638)
T ss_dssp --------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH--HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCC
T ss_pred --------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCc
Confidence 345566889999999999999998888888887777 6899999999999864221 11111000
Q ss_pred -------------------------------------------------------HhcCCCCcEEEcccCCCCCHHHHHH
Q 017937 252 -------------------------------------------------------EKFTDVDEVIPVSAKYGHGVEDIRD 276 (363)
Q Consensus 252 -------------------------------------------------------~~~~~~~~i~~vSAk~g~gi~eL~~ 276 (363)
.......|++..||++|.|++.|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd 231 (638)
T 3j25_A 152 VIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIE 231 (638)
T ss_dssp CCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHH
T ss_pred cccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhh
Confidence 0012345889999999999999999
Q ss_pred HHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHh-hccCCCCCceEEEEEEEEecCCCee
Q 017937 277 WILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM-QYRNEVPYACQVNVVSYKTRPTAKD 338 (363)
Q Consensus 277 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~-~~~~evp~s~~i~~~~~~~~~~~~~ 338 (363)
.|.+.++......+.+. .- .++. ...+..|..+.+++.+++...+..+
T Consensus 232 ~i~~~~p~p~~~~~~~~-~~-------------~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v 280 (638)
T 3j25_A 232 VITNKFYSSTHRGPSEL-CG-------------NVFKIEYTKKRQRLAYIRLYSGVLHLRDSV 280 (638)
T ss_dssp HHHHSCCCSGGGSCCCC-CB-------------EEBCCCCCSTTCCCCBCCBSSBCCCSCCCS
T ss_pred hhhccccCcccchhhhh-cc-------------eeeeeeeeccCceEEEEEEEcCcccCCCcc
Confidence 99999976432222111 00 0011 1234566667777777776655433
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.61 E-value=1.5e-15 Score=132.82 Aligned_cols=153 Identities=16% Similarity=0.204 Sum_probs=97.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccc-----cceecCCCCceEEE--------EEEEE------------------eCCC
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQK-----LSIVTNKPQTTRHR--------ILGIC------------------SGPE 162 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~-----~~~~~~~~~~t~~~--------~~~~~------------------~~~~ 162 (363)
+.++|+++|.+|||||||+++|++.. ...+...++++.+. ....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 44589999999999999999998652 23333333322100 00011 1234
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh
Q 017937 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (363)
Q Consensus 163 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~ 242 (363)
..+.+|||+|....+.. +...++.+++|+|++.+......+ ... .+.|+++|+||+|+.+..
T Consensus 109 ~d~iiidt~G~~~~~~~------------~~~~~~~~i~vvd~~~~~~~~~~~----~~~--~~~~~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 109 CDLLLIENVGNLICPVD------------FDLGENYRVVMVSVTEGDDVVEKH----PEI--FRVADLIVINKVALAEAV 170 (221)
T ss_dssp CSEEEEEEEEBSSGGGG------------CCCSCSEEEEEEEGGGCTTHHHHC----HHH--HHTCSEEEEECGGGHHHH
T ss_pred CCEEEEeCCCCCCCCch------------hccccCcEEEEEeCCCcchhhhhh----hhh--hhcCCEEEEecccCCcch
Confidence 67899999994211100 012568899999998764332211 111 247899999999986431
Q ss_pred --HHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhCCC
Q 017937 243 --EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 243 --~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
...+....+.......+++++||++|.|+++++++|.+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 171 GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 334444444443344689999999999999999999987753
No 192
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.60 E-value=7.4e-15 Score=131.93 Aligned_cols=166 Identities=20% Similarity=0.161 Sum_probs=102.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHh-----ccccceecCCCCceEE------------EEEEEE------------------
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMI-----GQKLSIVTNKPQTTRH------------RILGIC------------------ 158 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~-----~~~~~~~~~~~~~t~~------------~~~~~~------------------ 158 (363)
+...++++|.+|||||||+++|. +.+...+...++.+.. ......
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 55689999999999999999998 6666655544432110 000000
Q ss_pred -----------e-CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHH-----HHHhcc
Q 017937 159 -----------S-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI-----LEEGVG 221 (363)
Q Consensus 159 -----------~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~-----~~~~~~ 221 (363)
. ..++.+.+|||||.... ...... ...+...+.. +++++|+|+.........+ ......
T Consensus 93 ~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~--~~~~~l-~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 168 (262)
T 1yrb_A 93 EKFNEYLNKILRLEKENDYVLIDTPGQMET--FLFHEF-GVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL 168 (262)
T ss_dssp TTHHHHHHHHHHHHHHCSEEEEECCSSHHH--HHHSHH-HHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeCCCccch--hhhhhh-HHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc
Confidence 0 01258999999996432 111111 1223334566 8999999987654333221 111111
Q ss_pred ccCCCCCEEEEEcCCCCCChhHHHHHHHH----------------------------HHhcCCCCcEEEcccCCCCCHHH
Q 017937 222 DHKDKLPILLVLNKKDLIKPGEIAKKLEW----------------------------YEKFTDVDEVIPVSAKYGHGVED 273 (363)
Q Consensus 222 ~~~~~~piilV~NK~Dl~~~~~~~~~~~~----------------------------~~~~~~~~~i~~vSAk~g~gi~e 273 (363)
. .+.|+++|+||+|+.......+.... ........+++++||++|.|+++
T Consensus 169 ~--~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~ 246 (262)
T 1yrb_A 169 R--LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFED 246 (262)
T ss_dssp H--HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHH
T ss_pred c--cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHH
Confidence 1 46899999999999875533222111 12222334789999999999999
Q ss_pred HHHHHHhhCCCC
Q 017937 274 IRDWILTKLPLG 285 (363)
Q Consensus 274 L~~~i~~~l~~~ 285 (363)
|+++|.+.++.+
T Consensus 247 l~~~i~~~~~~~ 258 (262)
T 1yrb_A 247 LETLAYEHYCTC 258 (262)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccc
Confidence 999999877543
No 193
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.60 E-value=9.7e-16 Score=142.87 Aligned_cols=185 Identities=20% Similarity=0.282 Sum_probs=111.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc------cccceecCCCCceEE-----------------EEEEE-------------
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTTRH-----------------RILGI------------- 157 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~------~~~~~~~~~~~~t~~-----------------~~~~~------------- 157 (363)
+...++|+|.+|||||||+|.|.+ .+....+..+.++.. .....
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 445899999999999999999983 343333322222110 00000
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCC
Q 017937 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (363)
Q Consensus 158 ---------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~p 228 (363)
+...+.++.|+||||+.+... .....+|++++|+|+..+.. . . .+.......|
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~~------------~v~~~~d~vl~v~d~~~~~~-~-~----~i~~~i~~~~ 195 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSET------------AVADLTDFFLVLMLPGAGDE-L-Q----GIKKGIFELA 195 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCHH------------HHHTTSSEEEEEECSCC------------CCTTHHHHC
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcchh------------hHHhhCCEEEEEEcCCCccc-H-H----HHHHHHhccc
Confidence 122578999999999854321 11468999999999864321 0 0 0110001246
Q ss_pred EEEEEcCCCCCChhH-HHHHHHHHHh----cC-----CCCcEEEcccCCCCCHHHHHHHHHhhCC---CCCCCCCCCCCC
Q 017937 229 ILLVLNKKDLIKPGE-IAKKLEWYEK----FT-----DVDEVIPVSAKYGHGVEDIRDWILTKLP---LGPAYYPKDIVS 295 (363)
Q Consensus 229 iilV~NK~Dl~~~~~-~~~~~~~~~~----~~-----~~~~i~~vSAk~g~gi~eL~~~i~~~l~---~~~~~~~~~~~~ 295 (363)
.++|+||+|+..... .....+.+.. .. ...+++.+||++|.|+++|++.|.+... .+++ + .+..+
T Consensus 196 ~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~~~~~~~-~-~~~r~ 273 (337)
T 2qm8_A 196 DMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGE-I-AGKRR 273 (337)
T ss_dssp SEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTH-H-HHHHH
T ss_pred cEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHhCcH-H-HHHHH
Confidence 688889999764322 1111122211 11 1357899999999999999999988764 2222 1 12222
Q ss_pred CchHHHHHHHHHHHHHHhhccCCC
Q 017937 296 EHPERFFVGEIIREKIFMQYRNEV 319 (363)
Q Consensus 296 ~~~~~~~~~eiire~i~~~~~~ev 319 (363)
. ..++++.+++|++++..++++.
T Consensus 274 ~-~~~~~~~~~i~~~~~~~~~~~~ 296 (337)
T 2qm8_A 274 E-QDVKWMWALVHERLHQRLVGSA 296 (337)
T ss_dssp H-HHHHHHHHHHHHHHHHHHTSSH
T ss_pred H-HHHHHHHHHHHHHHHHHHHhCc
Confidence 2 2366889999999999887754
No 194
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.56 E-value=1.7e-14 Score=147.24 Aligned_cols=116 Identities=17% Similarity=0.135 Sum_probs=81.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccce-----------ecC------CCCceEEEEEEEEe-------CCCeeEEEEe
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICS-------GPEYQMILYD 169 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~-------~~~~~i~l~D 169 (363)
+-.+|+|+|+.++|||||..+|+.....+ +++ ..+.|.......+. .+++.++|+|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 34489999999999999999997432110 111 11222211111121 2368899999
Q ss_pred CCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 170 tpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
||||.+.. ..+..+++-+|++|+|+|+..+.+.+...+++.+.. .+.|.++++||+|+..
T Consensus 92 TPGHvDF~---------~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~--~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 92 TPGHVDFT---------IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK--YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCSCTTCH---------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--HTCCEEEEEECSSSTT
T ss_pred CCCCcccH---------HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEccccccC
Confidence 99987643 345556889999999999999999998888887776 7899999999999863
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.55 E-value=2.7e-14 Score=133.37 Aligned_cols=89 Identities=24% Similarity=0.271 Sum_probs=61.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC-----------------eeEEEEeCCCCchhhh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~l~DtpG~~~~~~ 178 (363)
.+|+++|.||||||||+|+|++..+ .+...|++|.....+.+...+ ..+.+|||||+.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~-~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI-EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 3899999999999999999999873 467788888776555555443 5799999999864321
Q ss_pred hhHHHHHHHHHHhhccccceEEEEeeCCC
Q 017937 179 HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (363)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ad~ii~VvD~~~ 207 (363)
. .+.+...+..+++.+|++++|+|+++
T Consensus 82 ~--~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 K--GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp H--HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred c--cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 01111223445789999999999986
No 196
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.53 E-value=7.5e-14 Score=133.16 Aligned_cols=163 Identities=15% Similarity=0.196 Sum_probs=79.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecC------CCCceEEEEEE-EEeCC--CeeEEEEeCCCCchhh-----hhhH
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN------KPQTTRHRILG-ICSGP--EYQMILYDTPGIIEKK-----IHML 181 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~------~~~~t~~~~~~-~~~~~--~~~i~l~DtpG~~~~~-----~~~~ 181 (363)
.+|+|+|++|||||||+|+|+|..+..... ...++...... ..... ...+.+|||+|+.... +..+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i 111 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 111 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHH
Confidence 479999999999999999999876532110 01122111111 11111 2468999999974321 1111
Q ss_pred HHHHHHHHH-----------hhccc--cceEEEEeeCC-CCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHH
Q 017937 182 DSMMMKNVR-----------SAGIN--ADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (363)
Q Consensus 182 ~~~~~~~~~-----------~~~~~--ad~ii~VvD~~-~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~ 247 (363)
.......+. .++.+ ++++||+++.+ .+....+..+...+. .+.|+|+|+||+|+....++...
T Consensus 112 ~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~~~ 188 (418)
T 2qag_C 112 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQF 188 (418)
T ss_dssp HHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHHHH
Confidence 111111111 12333 44577777765 566666644444443 46899999999999887665543
Q ss_pred H----HHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 248 L----EWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 248 ~----~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
. ..+... ..+++++||+++.++++++..|...+|
T Consensus 189 k~~i~~~~~~~--~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 189 KKQIMKEIQEH--KIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHH--TCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHc--CCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 2 222222 247899999999999999988888765
No 197
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.51 E-value=6.5e-14 Score=128.55 Aligned_cols=163 Identities=17% Similarity=0.168 Sum_probs=79.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCC------CceE--EEEEEEE--eCCCeeEEEEeCCCCch-----hhhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP------QTTR--HRILGIC--SGPEYQMILYDTPGIIE-----KKIH 179 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~------~~t~--~~~~~~~--~~~~~~i~l~DtpG~~~-----~~~~ 179 (363)
..+|+++|++|||||||+++|.+......+..+ ..|. ....... ......+.+|||+|+.. ..+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 348999999999999999999886322111110 0111 1111111 12236789999999732 1222
Q ss_pred hHHHHHHHHHHhhcc-------------ccceEEEEeeCCC-CCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH
Q 017937 180 MLDSMMMKNVRSAGI-------------NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (363)
Q Consensus 180 ~~~~~~~~~~~~~~~-------------~ad~ii~VvD~~~-~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~ 245 (363)
.+...+......++. .+++++|+++.+. +.......+...+ ..+.|+++|+||+|+....++.
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l---~~~~~iilV~~K~Dl~~~~e~~ 174 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERE 174 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHH---TTTSCEEEEECCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHH---HhcCCEEEEEEeCCCCCHHHHH
Confidence 222211111111111 2345677776544 4655543333332 2467999999999998765543
Q ss_pred H----HHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhCC
Q 017937 246 K----KLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 246 ~----~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
. ..+.... .+ .+++++||++| |++++|.++.+.+.
T Consensus 175 ~~~~~~~~~~~~-~~-~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 175 RLKKRILDEIEE-HN-IKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHHHH-TT-CCCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHH-cC-CeEEecCCccc-cccHHHHHHHHHhh
Confidence 2 2223333 33 47899999999 99999988877553
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.46 E-value=1.1e-13 Score=129.90 Aligned_cols=86 Identities=22% Similarity=0.304 Sum_probs=61.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeC---------------------CCeeEEEEeCCCCch
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---------------------PEYQMILYDTPGIIE 175 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~~~~i~l~DtpG~~~ 175 (363)
+|+++|.||||||||+|+|++.. ..+...+++|.....+.... .+..+.+|||||+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 79999999999999999999875 33566777766544443322 235799999999854
Q ss_pred hhh--hhHHHHHHHHHHhhccccceEEEEeeCCC
Q 017937 176 KKI--HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (363)
Q Consensus 176 ~~~--~~~~~~~~~~~~~~~~~ad~ii~VvD~~~ 207 (363)
... ..+. ..+...++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg----~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLG----NQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTT----HHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHH----HHHHHHHHhCCEEEEEEECCC
Confidence 321 1222 223445789999999999985
No 199
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.44 E-value=3.6e-14 Score=147.03 Aligned_cols=115 Identities=21% Similarity=0.255 Sum_probs=76.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecC---------------CCCceEEEE--EEEE--------------eCCC
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN---------------KPQTTRHRI--LGIC--------------SGPE 162 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~---------------~~~~t~~~~--~~~~--------------~~~~ 162 (363)
+..+|+|+|++|+|||||+++|++........ ..+.|.... ...+ ...+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 44589999999999999999998753222111 112222111 1111 1236
Q ss_pred eeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC
Q 017937 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (363)
Q Consensus 163 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 239 (363)
..+++|||||+.+ +. ..+..+++.+|++|+|+|++++.......++..+.. .+.|+++|+||+|+.
T Consensus 98 ~~i~liDTPG~~d--f~-------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVD--FS-------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCS--SC-------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchh--hH-------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCeEEEEECCCcc
Confidence 7899999999754 22 224455789999999999998876555544433333 578999999999986
No 200
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.43 E-value=3.5e-13 Score=118.13 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=42.1
Q ss_pred CCCEEEEEcCCCCCChh--HHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhC
Q 017937 226 KLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 226 ~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
..|.++|+||+|+.+.. ...+....+.......+++++||++|.|+++++++|.+.+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 36789999999986432 2334444444433445899999999999999999998765
No 201
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.37 E-value=1.7e-13 Score=129.21 Aligned_cols=189 Identities=19% Similarity=0.114 Sum_probs=91.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC-----------------eeEEEEeCCCCchhh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKK 177 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~l~DtpG~~~~~ 177 (363)
..+|+++|.+|||||||+|+|++..+ .++..|++|.....+.+...+ ..+.+|||||+....
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 44899999999999999999999876 567888888876666554432 359999999975422
Q ss_pred hhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCC
Q 017937 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV 257 (363)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~ 257 (363)
. ....+...+..+++.+|++++|+|+++... +.. +.. ...| +|++|....+-.......+.+....
T Consensus 101 s--~~~glg~~~l~~ir~aD~Il~VvD~~~~~~-----i~~-v~~--~~dP----~~di~~i~~El~l~d~~~~~k~~~~ 166 (396)
T 2ohf_A 101 H--NGQGLGNAFLSHISACDGIFHLTRAFEDDD-----ITH-VEG--SVDP----IRDIEIIHEELQLKDEEMIGPIIDK 166 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC--------------------CTT----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred c--hhhHHHHHHHHHHHhcCeEEEEEecCCCcc-----hhh-hcC--CCCh----HHHHHHhhhhhhhhhHHHHHHhhhh
Confidence 1 111222245566889999999999975321 111 111 1233 4455443322111111222211111
Q ss_pred CcEEEcc--cCCCCCHHHHHHHHHhhCCCC-CCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceE
Q 017937 258 DEVIPVS--AKYGHGVEDIRDWILTKLPLG-PAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQ 324 (363)
Q Consensus 258 ~~i~~vS--Ak~g~gi~eL~~~i~~~l~~~-~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~ 324 (363)
......| ++.+.+..++++.+...++++ ++......++. .. .+++ +.++......++|.+-
T Consensus 167 ~~k~~~~~g~~~~~~~~~ll~~i~~~L~e~~~~~~~~~~~~~---~e--~e~i-~~~~llt~KPviy~~N 230 (396)
T 2ohf_A 167 LEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWND---KE--IEVL-NKHLFLTSKPMVYLVN 230 (396)
T ss_dssp TCSCC--------CCHHHHHHHHHHHTTC--CCGGGCCCCCH---HH--HHHH-HHHCCGGGSCEEEEEE
T ss_pred hhhhhhcccchhhhhHHHHHHHHHHHHHhcCcchhhcccCCH---HH--HHHH-HHHHHHhCCceEEEEE
Confidence 1222334 577889999999999999887 54311111221 11 2445 4666666778888543
No 202
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.33 E-value=1.1e-11 Score=117.96 Aligned_cols=191 Identities=17% Similarity=0.157 Sum_probs=113.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccc----cceecCCCCceEEEEEEEEeCCC-eeEEEEeCCCCchhhhhhHHHHHHHH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKN 188 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~----~~~~~~~~~~t~~~~~~~~~~~~-~~i~l~DtpG~~~~~~~~~~~~~~~~ 188 (363)
+.+.++|+|++|+|||||+|.|.|-. ..+......+|+..+ ...... ..+.++|+||+... ...+...+ +.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~~-~~~~~~~L-~~ 143 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGST-NFPPDTYL-EK 143 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGGS-SCCHHHHH-HH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccch-HHHHHHHH-HH
Confidence 44589999999999999999999842 221112222222211 122222 36899999997432 12222221 11
Q ss_pred HHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC------------ChhHHHHHHHHHH----
Q 017937 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI------------KPGEIAKKLEWYE---- 252 (363)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~------------~~~~~~~~~~~~~---- 252 (363)
. .+...+..++ ++... .+.....+...+.. .++|+++|.||.|+. ....+.+....+.
T Consensus 144 ~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 144 M--KFYEYDFFII-ISATR-FKKNDIDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp T--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred c--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 1 1334455555 77654 34555556655554 578999999999974 2223333333332
Q ss_pred -hc-CCCCcEEEccc--CCCCCHHHHHHHHHhhCCCCCCCCC-----C-CCCCCchHHHHHHHHHHHHHHhh
Q 017937 253 -KF-TDVDEVIPVSA--KYGHGVEDIRDWILTKLPLGPAYYP-----K-DIVSEHPERFFVGEIIREKIFMQ 314 (363)
Q Consensus 253 -~~-~~~~~i~~vSA--k~g~gi~eL~~~i~~~l~~~~~~~~-----~-~~~~~~~~~~~~~eiire~i~~~ 314 (363)
.. .....+|.+|+ ..+.|+++|.+.|.+.++++++.+. . ...+.+..+....+.+++..+.-
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~~~~~l~~~~~~~~e~k~~~~~~~i~~~a~~a 289 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAA 289 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 21 22346899999 6667899999999999999987763 2 22223445566777777766443
No 203
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.32 E-value=9.7e-15 Score=140.07 Aligned_cols=223 Identities=16% Similarity=0.177 Sum_probs=121.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc------ccceecCCCC------------------------ceEEEE----EEEEeCC
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQ------------------------TTRHRI----LGICSGP 161 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~------~~~~~~~~~~------------------------~t~~~~----~~~~~~~ 161 (363)
..|+++|.+||||||++++|.+. ++..+...+. ++++.. .......
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 47999999999999999998752 2222221111 222210 0001125
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCC-C-EEEEEcCCCCC
Q 017937 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-P-ILLVLNKKDLI 239 (363)
Q Consensus 162 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~-p-iilV~NK~Dl~ 239 (363)
++.+.++||||...... .+...+ ..+ ..+..+|.+++|+|++.+.. ..... ..+. ... | ..+|+||+|..
T Consensus 180 ~~D~vIIDT~G~~~~~~-~l~~~l-~~i-~~~~~~d~vllVvda~~g~~-~~~~~-~~~~---~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEK-GLLEEM-KQI-KEITNPDEIILVIDGTIGQQ-AGIQA-KAFK---EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SCSEEEEECCCSCSSHH-HHHHHH-HHT-TSSSCCSEEEEEEEGGGGGG-HHHHH-HHHH---TTSCSCEEEEEECSSSC
T ss_pred CCCEEEEcCCCCccccH-HHHHHH-HHH-HHHhcCcceeEEeeccccHH-HHHHH-HHHh---hcccCCeEEEEeCCCCc
Confidence 67899999999754211 111111 111 22347899999999976542 22222 2222 234 5 89999999986
Q ss_pred ChhH-HHHHHHHHH-------------hcCCCCcEEEcccCCCCC-HHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHH
Q 017937 240 KPGE-IAKKLEWYE-------------KFTDVDEVIPVSAKYGHG-VEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVG 304 (363)
Q Consensus 240 ~~~~-~~~~~~~~~-------------~~~~~~~i~~vSAk~g~g-i~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (363)
.... ......... ....+.+...+|+..|.| +..|++.+.+.++ .+. ++.+.++...
T Consensus 252 ~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~-------e~~-~~~~~k~~~~ 323 (432)
T 2v3c_C 252 AKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVD-------EKT-EESIDAIMRG 323 (432)
T ss_dssp STTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSC-------SSS-STTHHHHCCS
T ss_pred cchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHH-------hhh-HHHHHHHHcC
Confidence 4322 212211111 001233445678888888 7776666655543 344 5667777777
Q ss_pred HHHHHHHHhhccC------------CCCCceEE-EEEEEEecCCCeeEEEEEEE----EeeCCceeE
Q 017937 305 EIIREKIFMQYRN------------EVPYACQV-NVVSYKTRPTAKDFIQVEIV----VEKNSQKII 354 (363)
Q Consensus 305 eiire~i~~~~~~------------evp~s~~i-~~~~~~~~~~~~~~i~~~i~----~~~~~q~~i 354 (363)
++.++.++..++. ++|+...+ ....++..+....+|.+.|. +||.+++.|
T Consensus 324 ~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~~~i 390 (432)
T 2v3c_C 324 KFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPKII 390 (432)
T ss_dssp CCHHHHHHHHTTTTSCC-----------------------CCHHHHHHHHHHHTTSCHHHHSSCTTC
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHccccccccchhhhcccHHHHHHHHHHHHhCCHHHhhCcccc
Confidence 7888899998886 89996542 23444422223355666777 889988844
No 204
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.32 E-value=5.9e-14 Score=132.40 Aligned_cols=147 Identities=22% Similarity=0.266 Sum_probs=95.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc-----ccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh--hhhHHHHHHHH
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKN 188 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~--~~~~~~~~~~~ 188 (363)
.+|+++|.+|+|||||+|+|++. ....++..+++|+........ ..+.++||||+.... ...+.......
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE---SGATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS---TTCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC---CCeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 47999999999999999999987 455578899999887655433 248999999986432 11121111111
Q ss_pred HHhhccccceEEEEeeCCCCC--chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccC
Q 017937 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (363)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk 266 (363)
+ ......+.++|+++..... .... ....+.. .+.|+++++||+|...........+.+.+..+. .+.+.++.
T Consensus 240 ~-~~~~~i~~~~~~l~~~~~~~~g~l~--~l~~l~~--~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~-~l~p~~~~ 313 (369)
T 3ec1_A 240 I-TPKREIHPRVYQLNEGQTLFFGGLA--RLDYIKG--GRRSFVCYMANELTVHRTKLEKADSLYANQLGE-LLSPPSKR 313 (369)
T ss_dssp H-SCSSCCCCEEEEECTTEEEEETTTE--EEEEEES--SSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT-TBCSSCGG
T ss_pred H-hcccccCceEEEEcCCceEEECCEE--EEEEccC--CCceEEEEecCCcccccccHHHHHHHHHHhcCC-ccCCCCch
Confidence 1 0126789999999984321 1110 0222333 568999999999998765555555566555543 55666666
Q ss_pred CCCCH
Q 017937 267 YGHGV 271 (363)
Q Consensus 267 ~g~gi 271 (363)
...++
T Consensus 314 ~~~~~ 318 (369)
T 3ec1_A 314 YAAEF 318 (369)
T ss_dssp GTTTC
T ss_pred hhhhc
Confidence 55444
No 205
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.31 E-value=4.4e-12 Score=117.32 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=75.8
Q ss_pred EEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCC---------CCc---hHHHHHHHhccc
Q 017937 155 LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK---------APE---RIDEILEEGVGD 222 (363)
Q Consensus 155 ~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~---------~~~---~~~~~~~~~~~~ 222 (363)
...+..++..+.+|||+| +..+ ...+..++++++++|||+|+++ ... ....++...+..
T Consensus 153 ~~~~~~~~v~l~iwDtaG--Qe~~-------R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~ 223 (340)
T 4fid_A 153 EYDFVVKDIPFHLIDVGG--QRSE-------RKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN 223 (340)
T ss_dssp EEEEESSSCEEEEEECCS--CHHH-------HHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC
T ss_pred EEEEEeeeeeeccccCCC--cccc-------cccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh
Confidence 344556778999999999 4443 3446778999999999999972 122 223344444332
Q ss_pred c-CCCCCEEEEEcCCCCCChhH-----------------HHHHHHHHHhcC-------------------------CCCc
Q 017937 223 H-KDKLPILLVLNKKDLIKPGE-----------------IAKKLEWYEKFT-------------------------DVDE 259 (363)
Q Consensus 223 ~-~~~~piilV~NK~Dl~~~~~-----------------~~~~~~~~~~~~-------------------------~~~~ 259 (363)
. ..+.|++|++||+|+...+. ..+...++.... ....
T Consensus 224 ~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 303 (340)
T 4fid_A 224 EFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVY 303 (340)
T ss_dssp GGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEE
T ss_pred hccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceE
Confidence 1 25789999999999853211 112212211111 1235
Q ss_pred EEEcccCCCCCHHHHHHHHHhhC
Q 017937 260 VIPVSAKYGHGVEDIRDWILTKL 282 (363)
Q Consensus 260 i~~vSAk~g~gi~eL~~~i~~~l 282 (363)
++++||+++.||..+|..+.+.+
T Consensus 304 ~h~TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 304 TNPTNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEeeCcHHHHHHHHHHHHHH
Confidence 68888888888888888776654
No 206
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.31 E-value=1.1e-13 Score=130.37 Aligned_cols=145 Identities=23% Similarity=0.215 Sum_probs=90.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc------cceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhh--hhhHHHHHHH
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK------LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMK 187 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~--~~~~~~~~~~ 187 (363)
.+|+++|.+|+|||||+|+|++.. ...++..+++|+......+.. .+.++||||+.... ...+......
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 479999999999999999999863 344688999998776544332 38999999986432 1122222211
Q ss_pred HHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCC
Q 017937 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
.. ......+.++|+++.......-.......+.. .+.|+++++||+|...........+.+.+..+. .+.+.++..
T Consensus 238 ~~-~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~--~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~-~l~p~~~~~ 313 (368)
T 3h2y_A 238 LI-TPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG--GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGD-LLSPPTPEE 313 (368)
T ss_dssp HH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEES--SSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTT-TBCSSCHHH
T ss_pred Hh-ccccccCceEEEEcCCCEEEEcceEEEEEecC--CCceEEEEecCccccccccHHHHHHHHHHHhCC-ccCCCchhh
Confidence 11 11367889999999843210000001222333 568999999999998877777767777665554 455555543
No 207
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.27 E-value=1.7e-11 Score=112.94 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=77.5
Q ss_pred EEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCC-------CC--Cch---HHHHHHHhcccc
Q 017937 156 GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC-------KA--PER---IDEILEEGVGDH 223 (363)
Q Consensus 156 ~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~-------~~--~~~---~~~~~~~~~~~~ 223 (363)
..+..++..+.+|||+| +..+. ..+..++++++++|||+|.+ +. ... ...++...+...
T Consensus 160 ~~~~~~~v~l~iwDtgG--Qe~~R-------~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 160 YPFDLQSVIFRMVDVGG--QRSER-------RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp EEEEETTEEEEEEEECC--SHHHH-------TTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred EEEEeeceeeEEEEcCC--chhHH-------HHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 34455678999999999 44433 33567799999999999775 21 222 233444444321
Q ss_pred -CCCCCEEEEEcCCCCCChh------------------HHHHHHHHHH----h----cCCCCcEEEcccCCCCCHHHHHH
Q 017937 224 -KDKLPILLVLNKKDLIKPG------------------EIAKKLEWYE----K----FTDVDEVIPVSAKYGHGVEDIRD 276 (363)
Q Consensus 224 -~~~~piilV~NK~Dl~~~~------------------~~~~~~~~~~----~----~~~~~~i~~vSAk~g~gi~eL~~ 276 (363)
..+.|++|++||+|+...+ ...+....+. . ......+++|||+++.||+.+|.
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 2579999999999985422 2222222221 1 11223578899999999999999
Q ss_pred HHHhhCC
Q 017937 277 WILTKLP 283 (363)
Q Consensus 277 ~i~~~l~ 283 (363)
.+.+.+.
T Consensus 311 ~v~~~Il 317 (327)
T 3ohm_A 311 AVKDTIL 317 (327)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.25 E-value=5.5e-13 Score=125.93 Aligned_cols=178 Identities=22% Similarity=0.199 Sum_probs=110.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCC-----------------eeEEEEeCCCCchh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEK 176 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~l~DtpG~~~~ 176 (363)
+..+|+++|.+|||||||+|+|++...+.++..|++|.....+.+...+ ..+.+||+||+...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 3458999999999999999999998875678899999887666655443 46899999997542
Q ss_pred hh--hhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCC------CChh------
Q 017937 177 KI--HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL------IKPG------ 242 (363)
Q Consensus 177 ~~--~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl------~~~~------ 242 (363)
.. ..+. ..+...++.+|++++|+|+... .+++.|.+++|- .+..
T Consensus 99 ~s~~e~L~----~~fl~~ir~~d~il~Vvd~~~d------------------~~i~~v~~~~dP~~di~ildeel~~~D~ 156 (392)
T 1ni3_A 99 ASTGVGLG----NAFLSHVRAVDAIYQVVRAFDD------------------AEIIHVEGDVDPIRDLSIIVDELLIKDA 156 (392)
T ss_dssp CCSSSSSC----HHHHHHHTTCSEEEEEEECCCT------------------TCSSCCSSSSCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHH----HHHHHHHHHHHHHHHHHhcccc------------------ceeeeeccccCcchhhhhchhhhHHHHH
Confidence 21 1122 2234456789999999999751 111223444442 1110
Q ss_pred -HHHHHHHHHHhc-CCC-CcEEEcccCCCCCHHHHHHHHHhhCCCC-CCCCCCCCCCCchHHHHHHHHHHHHHHhhccCC
Q 017937 243 -EIAKKLEWYEKF-TDV-DEVIPVSAKYGHGVEDIRDWILTKLPLG-PAYYPKDIVSEHPERFFVGEIIREKIFMQYRNE 318 (363)
Q Consensus 243 -~~~~~~~~~~~~-~~~-~~i~~vSAk~g~gi~eL~~~i~~~l~~~-~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~e 318 (363)
.+......+... ... ..+ -++.+.++.++++.+.+.+..+ +..++ ..+++. + .+++| +++......
T Consensus 157 ~~~~k~~~~l~~~~~~~g~ti---~sh~~~~~~~l~~~i~~~L~~G~~~~~~-~~~~~~-e----~e~i~-~~~~lt~kp 226 (392)
T 1ni3_A 157 EFVEKHLEGLRKITSRGANTL---EMKAKKEEQAIIEKVYQYLTETKQPIRK-GDWSNR-E----VEIIN-SLYLLTAKP 226 (392)
T ss_dssp HHHHHHHHHHHHTTCCSSCSS---SHHHHHHHHHHHHHHHHHHHTTCSCGGG-SCCCHH-H----HHHHH-TTCCGGGSC
T ss_pred HHHHHHHHHHHHHHHhcCCcc---ccccHHHHHHHHHHHHHHhccCCceeec-CCCCHH-H----HHHHH-HHhhhccCc
Confidence 111112222221 100 011 1667778899999999888887 66554 333333 2 25666 555566677
Q ss_pred CCCce
Q 017937 319 VPYAC 323 (363)
Q Consensus 319 vp~s~ 323 (363)
++|.+
T Consensus 227 ~~y~~ 231 (392)
T 1ni3_A 227 VIYLV 231 (392)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77743
No 209
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.20 E-value=1.8e-10 Score=109.54 Aligned_cols=146 Identities=14% Similarity=0.215 Sum_probs=84.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccccce---ecCCCCceEEEEEEEEeCCC--eeEEEEeCCCCchhh-----hhhH----H
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKLSI---VTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKK-----IHML----D 182 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~~~---~~~~~~~t~~~~~~~~~~~~--~~i~l~DtpG~~~~~-----~~~~----~ 182 (363)
+++|+|++|+|||||+|.|.|..+.. ....++.++..+.......+ ..+.++|++|+.... +..+ .
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~ 123 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFID 123 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHH
Confidence 39999999999999999999875321 11234444443333333332 368999999985421 1111 1
Q ss_pred HHHHHHHHhh---------ccccc---eEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHH
Q 017937 183 SMMMKNVRSA---------GINAD---CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW 250 (363)
Q Consensus 183 ~~~~~~~~~~---------~~~ad---~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~ 250 (363)
..+...+..+ ..+++ +++|++|+..+....+..+...+. .+.|+|+|+||+|...+.++......
T Consensus 124 ~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~---~~~~vI~Vi~KtD~Lt~~E~~~l~~~ 200 (427)
T 2qag_B 124 AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD---SKVNIIPIIAKADAISKSELTKFKIK 200 (427)
T ss_dssp HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC---SCSEEEEEESCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh---hCCCEEEEEcchhccchHHHHHHHHH
Confidence 1111111111 12233 477788888877777766666664 57899999999999988877666555
Q ss_pred HHh--cCCCCcEEEccc
Q 017937 251 YEK--FTDVDEVIPVSA 265 (363)
Q Consensus 251 ~~~--~~~~~~i~~vSA 265 (363)
+.. .....+++.+|.
T Consensus 201 I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 201 ITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHcCCcEEecCC
Confidence 543 112235566664
No 210
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.15 E-value=9.1e-12 Score=113.02 Aligned_cols=166 Identities=17% Similarity=0.124 Sum_probs=100.7
Q ss_pred EeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHH
Q 017937 168 YDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (363)
Q Consensus 168 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~ 247 (363)
-..||+.... .+++...+..+|++++|+|+.++.......+.+++ .++|.++|+||+|+.+......+
T Consensus 4 ~w~PGhm~ka--------~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~ 71 (282)
T 1puj_A 4 QWFPGHMAKA--------RREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQW 71 (282)
T ss_dssp -----CTTHH--------HHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHH
T ss_pred cCCchHHHHH--------HHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHH
Confidence 3578864332 24556668999999999999987654433455554 46899999999999986655555
Q ss_pred HHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEE
Q 017937 248 LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNV 327 (363)
Q Consensus 248 ~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~ 327 (363)
.+.+... + .+++.+||++|.|+++|++.+.+.+...............+. +++..+.+++|||+++|.
T Consensus 72 ~~~~~~~-g-~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~----------~v~~vG~~nvGKSsliN~ 139 (282)
T 1puj_A 72 KEHFENQ-G-IRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAI----------RALIIGIPNVGKSTLINR 139 (282)
T ss_dssp HHHHHTT-T-CCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCE----------EEEEEESTTSSHHHHHHH
T ss_pred HHHHHhc-C-CcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCc----------eEEEEecCCCchHHHHHH
Confidence 5555432 2 378999999999999999988776542100000000000000 245568999999999998
Q ss_pred EEEEec------CCCeeEEEEEEEEeeCCceeEEecCCCC
Q 017937 328 VSYKTR------PTAKDFIQVEIVVEKNSQKIILIGKVSP 361 (363)
Q Consensus 328 ~~~~~~------~~~~~~i~~~i~~~~~~q~~ivig~~G~ 361 (363)
+.+... ++++... ..+ ..+....+++++|=
T Consensus 140 l~~~~~~~~~~~~g~T~~~-~~~---~~~~~~~l~DtpG~ 175 (282)
T 1puj_A 140 LAKKNIAKTGDRPGITTSQ-QWV---KVGKELELLDTPGI 175 (282)
T ss_dssp HHTSCCC-------------CCE---EETTTEEEEECCCC
T ss_pred HhcCceeecCCCCCeeeee-EEE---EeCCCEEEEECcCc
Confidence 765442 2221111 111 12457889999993
No 211
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.15 E-value=2.4e-11 Score=113.47 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=79.8
Q ss_pred EEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC------------chHHHHHHHhccc-
Q 017937 156 GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERIDEILEEGVGD- 222 (363)
Q Consensus 156 ~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~------------~~~~~~~~~~~~~- 222 (363)
..+..++..+.+|||+|. ..+.. .+..++.+++++|||+|+++.. .....++...+..
T Consensus 186 ~~~~~~~~~l~iwDt~GQ--e~~r~-------~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 186 THFTFKDLHFKMFDVGGQ--RSERK-------KWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256 (353)
T ss_dssp EEEEETTEEEEEEEECCS--GGGGG-------GGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred EEEeeCCeeEEEEeCCCc--hhhhH-------HHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence 344556789999999994 44433 3556789999999999998731 2233344444432
Q ss_pred cCCCCCEEEEEcCCCCCChh-----------------HHHHHHHHHH----hc-----CCCCcEEEcccCCCCCHHHHHH
Q 017937 223 HKDKLPILLVLNKKDLIKPG-----------------EIAKKLEWYE----KF-----TDVDEVIPVSAKYGHGVEDIRD 276 (363)
Q Consensus 223 ~~~~~piilV~NK~Dl~~~~-----------------~~~~~~~~~~----~~-----~~~~~i~~vSAk~g~gi~eL~~ 276 (363)
...+.|++||+||+|+.... ...+...++. .. .....+++|||++|.||.++|+
T Consensus 257 ~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~ 336 (353)
T 1cip_A 257 WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFD 336 (353)
T ss_dssp GGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred cccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHH
Confidence 12579999999999985221 1222223322 11 2345789999999999999999
Q ss_pred HHHhhCC
Q 017937 277 WILTKLP 283 (363)
Q Consensus 277 ~i~~~l~ 283 (363)
++.+.+.
T Consensus 337 ~v~~~i~ 343 (353)
T 1cip_A 337 AVTDVII 343 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987663
No 212
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.15 E-value=1.4e-10 Score=112.87 Aligned_cols=160 Identities=21% Similarity=0.277 Sum_probs=94.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHh------ccccceecCCCCc-----------eE--EEEEEE----------------E
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT-----------TR--HRILGI----------------C 158 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~------~~~~~~~~~~~~~-----------t~--~~~~~~----------------~ 158 (363)
+...|+++|.+||||||++++|. |.++..++..+.. ++ ..+... +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998 6665544432211 00 001110 0
Q ss_pred eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCE-EEEEcCCC
Q 017937 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKD 237 (363)
Q Consensus 159 ~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~pi-ilV~NK~D 237 (363)
...++.+.||||||...... .+...... +.. +..+|.+++|+|++.+.... .. ...+.. ..|+ ++|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~-~l~~el~~-~~~-~i~pd~vllVvDa~~g~~~~-~~-a~~~~~---~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQED-SLFEEMLQ-VAN-AIQPDNIVYVMDASIGQACE-AQ-AKAFKD---KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCH-HHHHHHHH-HHH-HHCCSEEEEEEETTCCTTHH-HH-HHHHHH---HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccch-hHHHHHHH-HHh-hhcCceEEEEEeccccccHH-HH-HHHHHh---hcCceEEEEeCCc
Confidence 11567899999999754221 12122211 112 23789999999998765422 22 222221 2574 89999999
Q ss_pred CCChhH-HHHHHHHHH-------------hcCCCCcEEEcccCCCCC-HHHHHHHHHhh
Q 017937 238 LIKPGE-IAKKLEWYE-------------KFTDVDEVIPVSAKYGHG-VEDIRDWILTK 281 (363)
Q Consensus 238 l~~~~~-~~~~~~~~~-------------~~~~~~~i~~vSAk~g~g-i~eL~~~i~~~ 281 (363)
...... .......+. ....+.+.+.+|+.+|.| +.+|++++.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 874322 111222111 111234556789999999 99999999877
No 213
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.14 E-value=9.3e-11 Score=107.47 Aligned_cols=135 Identities=19% Similarity=0.253 Sum_probs=83.8
Q ss_pred HHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCC
Q 017937 130 TLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP 209 (363)
Q Consensus 130 SLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~ 209 (363)
+|+++++...|.. .....|.-+........+ ..+.+||| ++.+..+. +.+++++|++|+|+|++++.
T Consensus 32 sl~~~~~~~~f~~-~~~~pTiGd~~~~~~~~~-~~~~iwD~----qer~~~l~-------~~~~~~ad~vilV~D~~~~~ 98 (301)
T 1u0l_A 32 ERILCKLRGKFRL-QNLKIYVGDRVEYTPDET-GSGVIENV----LHRKNLLT-------KPHVANVDQVILVVTVKMPE 98 (301)
T ss_dssp CEEEEEECGGGTT-TTCCCCTTCEEEEECCCS-SSEEEEEE----CCCSCEET-------TTTEESCCEEEEEECSSTTC
T ss_pred cEEEEEEcccccc-cCCCCCCccEEEEEEcCC-CeEEEEEE----ccccceee-------ccccccCCEEEEEEeCCCCC
Confidence 5777777666531 111112112222222222 37999999 23444442 24689999999999999764
Q ss_pred ---chHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHHHHHHHh
Q 017937 210 ---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILT 280 (363)
Q Consensus 210 ---~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL~~~i~~ 280 (363)
.....|+.. ++. .++|+++|+||+|+.+...+.+...+........++++|||++|.|+++++.++..
T Consensus 99 ~s~~~l~~~l~~-~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 99 TSTYIIDKFLVL-AEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp CCHHHHHHHHHH-HHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred CCHHHHHHHHHH-HHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 233444433 333 57999999999999876553222222222211158999999999999999998754
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.07 E-value=4.5e-11 Score=112.54 Aligned_cols=116 Identities=21% Similarity=0.201 Sum_probs=75.5
Q ss_pred HHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh----HHHHHHHHHHhcCCC--CcE
Q 017937 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEV 260 (363)
Q Consensus 187 ~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~i 260 (363)
+.+..+.+.+|++++|+|++++.......+.+.+ .++|+++|+||+|+.+.. .+.+.........+. .++
T Consensus 61 ~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v 136 (368)
T 3h2y_A 61 RILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDV 136 (368)
T ss_dssp HHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEE
T ss_pred HHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccE
Confidence 3444556788899999999874322212222222 468999999999997543 233332222222333 378
Q ss_pred EEcccCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEE
Q 017937 261 IPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSY 330 (363)
Q Consensus 261 ~~vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~ 330 (363)
+.+||++|.|+++|++.|.+..... .+...+.+++|||+++|.+..
T Consensus 137 ~~iSA~~g~gi~~L~~~l~~~~~~~------------------------~i~~vG~~nvGKStliN~L~~ 182 (368)
T 3h2y_A 137 FLISAAKGQGIAELADAIEYYRGGK------------------------DVYVVGCTNVGKSTFINRMIK 182 (368)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHTTS------------------------CEEEEEBTTSSHHHHHHHHHH
T ss_pred EEEeCCCCcCHHHHHhhhhhhcccc------------------------eEEEecCCCCChhHHHHHHHh
Confidence 9999999999999999998765320 133456777777777776654
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.05 E-value=9e-11 Score=110.58 Aligned_cols=140 Identities=20% Similarity=0.147 Sum_probs=89.5
Q ss_pred HHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChh----HHHHHHHHHHhcCCC--CcEEE
Q 017937 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEVIP 262 (363)
Q Consensus 189 ~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~i~~ 262 (363)
+..+...++++++|+|++++.......+.+.+ .++|+++|+||+|+.+.. .+.+.........+. .+++.
T Consensus 65 L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~ 140 (369)
T 3ec1_A 65 LHRIGESKALVVNIVDIFDFNGSFIPGLPRFA----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCL 140 (369)
T ss_dssp HHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEE
T ss_pred HHHhhccCcEEEEEEECCCCCCchhhHHHHHh----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEE
Confidence 44446789999999999987644333334333 368999999999997642 223332222233333 47899
Q ss_pred cccCCCCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEE-----------
Q 017937 263 VSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYK----------- 331 (363)
Q Consensus 263 vSAk~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~----------- 331 (363)
+||++|.|+++|++.|.+..... .++..+.+++|||+++|.+...
T Consensus 141 iSA~~g~gi~~L~~~I~~~~~~~------------------------~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~ 196 (369)
T 3ec1_A 141 VSAAKGIGMAKVMEAINRYREGG------------------------DVYVVGCTNVGKSTFINRIIEEATGKGNVITTS 196 (369)
T ss_dssp CBTTTTBTHHHHHHHHHHHHTTS------------------------CEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEE
T ss_pred EECCCCCCHHHHHHHHHhhcccC------------------------cEEEEcCCCCchHHHHHHHHhhccCCccceeec
Confidence 99999999999999998765321 1334567777777777666543
Q ss_pred ecCCCeeEEEEEEEEeeCCceeEEecCCC
Q 017937 332 TRPTAKDFIQVEIVVEKNSQKIILIGKVS 360 (363)
Q Consensus 332 ~~~~~~~~i~~~i~~~~~~q~~ivig~~G 360 (363)
..++++.... .+ . -.....++|++|
T Consensus 197 ~~~gtT~~~~-~~--~-~~~~~~liDtPG 221 (369)
T 3ec1_A 197 YFPGTTLDMI-EI--P-LESGATLYDTPG 221 (369)
T ss_dssp ECTTSSCEEE-EE--E-CSTTCEEEECCS
T ss_pred CCCCeEEeeE-EE--E-eCCCeEEEeCCC
Confidence 2234333321 11 2 123478999998
No 216
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.05 E-value=1.9e-10 Score=107.84 Aligned_cols=117 Identities=15% Similarity=0.059 Sum_probs=75.4
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCC---------C---chHHHHHHHhccc-c
Q 017937 157 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA---------P---ERIDEILEEGVGD-H 223 (363)
Q Consensus 157 ~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~---------~---~~~~~~~~~~~~~-~ 223 (363)
.+..++..+.+|||+|. ..+. ..+..++.+++++|||+|+++. . .....++...+.. .
T Consensus 195 ~~~~~~~~l~i~Dt~Gq--~~~r-------~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 195 DFEIKNVPFKMVDVGGQ--RSER-------KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV 265 (362)
T ss_dssp EEEETTEEEEEEEECC----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred EeeeCCeEEEEEeccch--hhhh-------hhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence 34556789999999994 3322 3356678999999999999873 1 2233444444432 1
Q ss_pred CCCCCEEEEEcCCCCCCh------------------hHHHHHHHHH----Hhc-----CCCCcEEEcccCCCCCHHHHHH
Q 017937 224 KDKLPILLVLNKKDLIKP------------------GEIAKKLEWY----EKF-----TDVDEVIPVSAKYGHGVEDIRD 276 (363)
Q Consensus 224 ~~~~piilV~NK~Dl~~~------------------~~~~~~~~~~----~~~-----~~~~~i~~vSAk~g~gi~eL~~ 276 (363)
..+.|+|||+||+|+... ....+...++ ... .....+++|||++|.||+++|+
T Consensus 266 ~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~ 345 (362)
T 1zcb_A 266 FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFR 345 (362)
T ss_dssp GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHH
T ss_pred hCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHH
Confidence 257999999999998521 1122222222 111 1234689999999999999999
Q ss_pred HHHhhC
Q 017937 277 WILTKL 282 (363)
Q Consensus 277 ~i~~~l 282 (363)
++.+.+
T Consensus 346 ~v~~~i 351 (362)
T 1zcb_A 346 DVKDTI 351 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.03 E-value=1.9e-09 Score=97.02 Aligned_cols=132 Identities=17% Similarity=0.293 Sum_probs=76.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceec-------CCCCceEEEEEEEE-eCC--CeeEEEEeCCCCchhhh-----hh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-------NKPQTTRHRILGIC-SGP--EYQMILYDTPGIIEKKI-----HM 180 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~-------~~~~~t~~~~~~~~-~~~--~~~i~l~DtpG~~~~~~-----~~ 180 (363)
.+++++|++|+|||||+|.|.|....... ..+.++.....+.+ ... ...++++|++|+..... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 37999999999999999999985432211 11111111111211 111 23689999999743211 11
Q ss_pred HHHHHHHHHH----h----------hccccceEEEEeeCC-CCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHH
Q 017937 181 LDSMMMKNVR----S----------AGINADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (363)
Q Consensus 181 ~~~~~~~~~~----~----------~~~~ad~ii~VvD~~-~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~ 245 (363)
+......... . .+..++++++++|.. .+....+..+...+.. . .++|+|+||+|.....++.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~--~-~~vI~Vi~K~D~lt~~e~~ 159 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK--V-VNIIPVIAKADTMTLEEKS 159 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT--T-SEEEEEETTGGGSCHHHHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh--c-CcEEEEEeccccCCHHHHH
Confidence 2222211111 1 123468889999965 6667777666666654 4 8999999999999877665
Q ss_pred HHHHH
Q 017937 246 KKLEW 250 (363)
Q Consensus 246 ~~~~~ 250 (363)
.....
T Consensus 160 ~~k~~ 164 (270)
T 3sop_A 160 EFKQR 164 (270)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 218
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.01 E-value=3.8e-10 Score=106.71 Aligned_cols=118 Identities=9% Similarity=0.085 Sum_probs=77.6
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCC----------CC--chHHHHHHHhccc-c
Q 017937 157 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK----------AP--ERIDEILEEGVGD-H 223 (363)
Q Consensus 157 ~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~----------~~--~~~~~~~~~~~~~-~ 223 (363)
.+..++..+.+|||+| +..+..+ +..++++++++|||+|+++ .. .....|+...+.. .
T Consensus 211 ~~~~~~v~l~iwDtaG--Qe~~r~~-------w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 211 KFQVDKVNFHMFDVGG--QRDERRK-------WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 281 (402)
T ss_dssp EEEETTEEEEEEEECC--SGGGGGG-------GGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred EeecCCccceecccch--hhhhhhh-------hHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence 3445578999999999 4444433 5567899999999999987 21 2334455554433 1
Q ss_pred CCCCCEEEEEcCCCCCChhH--------------------------------HHHHHHHH----Hhc-------CCCCcE
Q 017937 224 KDKLPILLVLNKKDLIKPGE--------------------------------IAKKLEWY----EKF-------TDVDEV 260 (363)
Q Consensus 224 ~~~~piilV~NK~Dl~~~~~--------------------------------~~~~~~~~----~~~-------~~~~~i 260 (363)
..+.|++||+||+|+...+. ..+...++ ... .....+
T Consensus 282 ~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~ 361 (402)
T 1azs_C 282 LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP 361 (402)
T ss_dssp CSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEE
T ss_pred CCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEE
Confidence 25789999999999843211 11111111 111 112356
Q ss_pred EEcccCCCCCHHHHHHHHHhhCC
Q 017937 261 IPVSAKYGHGVEDIRDWILTKLP 283 (363)
Q Consensus 261 ~~vSAk~g~gi~eL~~~i~~~l~ 283 (363)
++|||+++.||+++|.++.+.+.
T Consensus 362 ~~TSA~d~~nV~~vF~~v~~~I~ 384 (402)
T 1azs_C 362 HFTCAVDTENIRRVFNDCRDIIQ 384 (402)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEeecCcCHHHHHHHHHHHHH
Confidence 89999999999999999876653
No 219
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.00 E-value=3e-10 Score=106.03 Aligned_cols=113 Identities=16% Similarity=0.133 Sum_probs=71.9
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCC---------CC---chHHHHHHHhcccc-CCCC
Q 017937 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK---------AP---ERIDEILEEGVGDH-KDKL 227 (363)
Q Consensus 161 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~---------~~---~~~~~~~~~~~~~~-~~~~ 227 (363)
....+.+|||+| +..+..+ +..++++++++|||+|++. .. .....++....... ..+.
T Consensus 181 ~~v~l~iwDtaG--Qe~~r~~-------~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~ 251 (354)
T 2xtz_A 181 SGEVYRLFDVGG--QRNERRK-------WIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 251 (354)
T ss_dssp ---EEEEEEECC--STTGGGG-------TGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSC
T ss_pred cceeeEEEECCC--chhhhHH-------HHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCC
Confidence 457899999999 4444433 4566899999999999871 12 22333444443321 2578
Q ss_pred CEEEEEcCCCCCChh-----------------------HHHHHHHHHHhc--------------CCCCcEEEcccCCCCC
Q 017937 228 PILLVLNKKDLIKPG-----------------------EIAKKLEWYEKF--------------TDVDEVIPVSAKYGHG 270 (363)
Q Consensus 228 piilV~NK~Dl~~~~-----------------------~~~~~~~~~~~~--------------~~~~~i~~vSAk~g~g 270 (363)
|++||+||+|+...+ ...+....+... .....+++|||+++.|
T Consensus 252 piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~n 331 (354)
T 2xtz_A 252 SFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKL 331 (354)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHH
T ss_pred eEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchh
Confidence 999999999984221 112222221210 1223468999999999
Q ss_pred HHHHHHHHHhhC
Q 017937 271 VEDIRDWILTKL 282 (363)
Q Consensus 271 i~eL~~~i~~~l 282 (363)
|+++|+++.+.+
T Consensus 332 V~~vF~~v~~~I 343 (354)
T 2xtz_A 332 VKKTFKLVDETL 343 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988655
No 220
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.98 E-value=1e-11 Score=111.42 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=88.1
Q ss_pred HHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCChhHHHHHHHHHHhcCCCCcEEEcccCC
Q 017937 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (363)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~ 267 (363)
.+...+.++|++++|+|+.++.......+. ++ ++|.++|+||+|+.+..........+... + .++ .+||++
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~~~~~~~~~~~~-g-~~v-~iSa~~ 84 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKTTKKWVEFFKKQ-G-KRV-ITTHKG 84 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHHHHHHHHHHHHT-T-CCE-EECCTT
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHHHHHHHHHHHHc-C-CeE-EEECCC
Confidence 345558999999999999987643221111 11 68999999999999876555555555442 2 367 999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec------CCCeeEEE
Q 017937 268 GHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR------PTAKDFIQ 341 (363)
Q Consensus 268 g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~------~~~~~~i~ 341 (363)
|.|+++|++.|...+ -+++..+.+++|||+++|.+.+... ++++....
T Consensus 85 ~~gi~~L~~~l~~~~--------------------------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~ 138 (262)
T 3cnl_A 85 EPRKVLLKKLSFDRL--------------------------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ 138 (262)
T ss_dssp SCHHHHHHHHCCCTT--------------------------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC
T ss_pred CcCHHHHHHHHHHhh--------------------------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE
Confidence 999999998876543 0234556788888888877654332 11111110
Q ss_pred EEEEEeeCCceeEEecCCCC
Q 017937 342 VEIVVEKNSQKIILIGKVSP 361 (363)
Q Consensus 342 ~~i~~~~~~q~~ivig~~G~ 361 (363)
.+ ..+....+++++|-
T Consensus 139 -~~---~~~~~~~l~DtpG~ 154 (262)
T 3cnl_A 139 -WF---SLENGVKILDTPGI 154 (262)
T ss_dssp -EE---ECTTSCEEESSCEE
T ss_pred -EE---EeCCCEEEEECCCc
Confidence 11 22356788999883
No 221
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.87 E-value=8.2e-09 Score=87.86 Aligned_cols=100 Identities=11% Similarity=0.044 Sum_probs=67.7
Q ss_pred HHHHHHhhccccceEEEEeeCCCCC-chHHHHH---HHhcccc--CCCCCEEEEEcCC-CCCChhHHHHHHHHHH--hcC
Q 017937 185 MMKNVRSAGINADCIVVLVDACKAP-ERIDEIL---EEGVGDH--KDKLPILLVLNKK-DLIKPGEIAKKLEWYE--KFT 255 (363)
Q Consensus 185 ~~~~~~~~~~~ad~ii~VvD~~~~~-~~~~~~~---~~~~~~~--~~~~piilV~NK~-Dl~~~~~~~~~~~~~~--~~~ 255 (363)
+...|+.|+.++|++|||||+++.. ......+ ...+... ..+.|++|++||. |+...-...++.+.+. ...
T Consensus 115 lRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~ 194 (227)
T 3l82_B 115 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLN 194 (227)
T ss_dssp --CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGC
T ss_pred HHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCC
Confidence 3445778899999999999998763 1233333 3334332 1578999999995 7764333333332221 123
Q ss_pred CCCcEEEcccCCCCCHHHHHHHHHhhCCC
Q 017937 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 256 ~~~~i~~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
..+.+..|||++|+|+.+-++||.+.+..
T Consensus 195 R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 195 HPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp SCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred CCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 45689999999999999999999988864
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.77 E-value=4.6e-09 Score=95.14 Aligned_cols=59 Identities=31% Similarity=0.463 Sum_probs=38.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCch
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~ 175 (363)
+..+|+++|.||||||||+|+|.+.....++..+++|++...... +..+.++||||+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGILW 177 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE---TTTEEEEECCCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe---CCCEEEEECcCcCC
Confidence 456899999999999999999999887778899999987643222 34789999999864
No 223
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.75 E-value=1.8e-08 Score=92.15 Aligned_cols=85 Identities=24% Similarity=0.361 Sum_probs=61.9
Q ss_pred hhccccceEEEEeeCCCCC-c--hHHHHHHHhccccCCCCCEEEEEcCCCCCChhH---HHHHHHHHHhcCCCCcEEEcc
Q 017937 191 SAGINADCIVVLVDACKAP-E--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVS 264 (363)
Q Consensus 191 ~~~~~ad~ii~VvD~~~~~-~--~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~i~~vS 264 (363)
.++.++|++++|+|++++. . ..+.|+. .+.. .++|+++|+||+|+.++.. ..+....+... + .+++++|
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~-~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~-g-~~~~~~S 149 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLV-VYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDA-G-YDVLKVS 149 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHH-HHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT-T-CEEEECC
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHH-HHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHC-C-CeEEEEE
Confidence 3589999999999999764 2 2234443 3333 6799999999999987653 33334444332 3 3899999
Q ss_pred cCCCCCHHHHHHHHHh
Q 017937 265 AKYGHGVEDIRDWILT 280 (363)
Q Consensus 265 Ak~g~gi~eL~~~i~~ 280 (363)
|++|.|+++|++.+..
T Consensus 150 A~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 150 AKTGEGIDELVDYLEG 165 (302)
T ss_dssp TTTCTTHHHHHHHTTT
T ss_pred CCCCCCHHHHHhhccC
Confidence 9999999999988754
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.65 E-value=2.1e-08 Score=99.25 Aligned_cols=60 Identities=30% Similarity=0.401 Sum_probs=42.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEE-------eCCCeeEEEEeCCCCch
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-------SGPEYQMILYDTPGIIE 175 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~-------~~~~~~i~l~DtpG~~~ 175 (363)
+..+|+|+|.||||||||+|+|+|..... ..+++|+....+.+ ...+..+.++||||+..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 34589999999999999999999987532 33333332222221 23567899999999864
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.65 E-value=1.1e-07 Score=90.72 Aligned_cols=147 Identities=16% Similarity=0.253 Sum_probs=80.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHh------ccccceecCCCCce-------------EEEEEEE----------------Ee
Q 017937 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-------------RHRILGI----------------CS 159 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~------~~~~~~~~~~~~~t-------------~~~~~~~----------------~~ 159 (363)
+..|+++|.+|+||||++..|. |.++..+...+... ....... ..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999886 34433322111100 0000000 01
Q ss_pred CCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC
Q 017937 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (363)
Q Consensus 160 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 239 (363)
..++.+.++||||..+.....+.+ + ..+.. ...+|.+++|+|++.+... .... ..+.. .-.+..+|+||+|..
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~e-l-~~i~~-~~~pd~vlLVvDA~~gq~a-~~~a-~~f~~--~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEE-M-KQISN-VIHPHEVILVIDGTIGQQA-YNQA-LAFKE--ATPIGSIIVTKLDGS 252 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHH-H-HHHHH-HHCCSEEEEEEEGGGGGGH-HHHH-HHHHH--SCTTEEEEEECCSSC
T ss_pred hCCCCEEEEECCCcccchHHHHHH-H-HHHHH-hhcCceEEEEEeCCCchhH-HHHH-HHHHh--hCCCeEEEEECCCCc
Confidence 134789999999965432222211 1 12222 3468999999999875432 2222 22222 234567999999987
Q ss_pred ChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHH
Q 017937 240 KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (363)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL 274 (363)
..... ....... .+ .|+..++. |+++++|
T Consensus 253 ~~gG~--~ls~~~~-~g-~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 253 AKGGG--ALSAVAA-TG-APIKFIGT--GEKIDDI 281 (443)
T ss_dssp SSHHH--HHHHHHT-TC-CCEEEEEC--SSSTTCE
T ss_pred ccccH--HHHHHHH-HC-CCEEEEEc--CCChHHh
Confidence 54322 1122222 22 36766664 8877654
No 226
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.56 E-value=1.3e-07 Score=84.48 Aligned_cols=98 Identities=11% Similarity=0.044 Sum_probs=66.6
Q ss_pred HHHHhhccccceEEEEeeCCCCCc-hHHHHHH---Hhcccc--CCCCCEEEEEcC-CCCCChhHHHHHHHHHH--hcCCC
Q 017937 187 KNVRSAGINADCIVVLVDACKAPE-RIDEILE---EGVGDH--KDKLPILLVLNK-KDLIKPGEIAKKLEWYE--KFTDV 257 (363)
Q Consensus 187 ~~~~~~~~~ad~ii~VvD~~~~~~-~~~~~~~---~~~~~~--~~~~piilV~NK-~Dl~~~~~~~~~~~~~~--~~~~~ 257 (363)
..|+.|+.++|++|||||+++... .....+. ..+... ..+.|++|++|| .|+...-...++.+.+. .....
T Consensus 202 plWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~ 281 (312)
T 3l2o_B 202 PQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHP 281 (312)
T ss_dssp HHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSC
T ss_pred HHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCc
Confidence 447788999999999999987642 1222222 233221 157899999997 58864433333333221 12245
Q ss_pred CcEEEcccCCCCCHHHHHHHHHhhCCC
Q 017937 258 DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (363)
Q Consensus 258 ~~i~~vSAk~g~gi~eL~~~i~~~l~~ 284 (363)
+.+..|||++|+|+.+-++||.+.+..
T Consensus 282 W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 282 WLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp EEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred EEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 679999999999999999999998864
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.53 E-value=2.6e-08 Score=89.24 Aligned_cols=58 Identities=36% Similarity=0.482 Sum_probs=38.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEEEEEeCCCeeEEEEeCCCCchh
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l~DtpG~~~~ 176 (363)
.+++++|.+|||||||+|+|.+.....+...+++|+...... . +..+.+|||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS--L-ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE--C-TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE--e-CCCEEEEECCCcccC
Confidence 489999999999999999999988766778888887653222 1 247899999998643
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.34 E-value=7.4e-07 Score=85.01 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=77.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHh------ccccceecCC----------------CCceEEEEE-------------EEEe
Q 017937 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNK----------------PQTTRHRIL-------------GICS 159 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~------~~~~~~~~~~----------------~~~t~~~~~-------------~~~~ 159 (363)
...|+++|.+||||||++..|. |.++..+... .+....... ....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4479999999999999999886 3333221111 011000000 0011
Q ss_pred CCCeeEEEEeCCCCch--hhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCC
Q 017937 160 GPEYQMILYDTPGIIE--KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (363)
Q Consensus 160 ~~~~~i~l~DtpG~~~--~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~D 237 (363)
..++.+.++||||..+ .....+ ..+ ..+.... .+|.+++|+|++.+... ......+ .. .-.+..+|+||+|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm-~el-~~i~~~~-~pd~vlLVlDa~~gq~a-~~~a~~f-~~--~~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLL-EEM-KEMYDVL-KPDDVILVIDASIGQKA-YDLASRF-HQ--ASPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHH-HHH-HHHHHHH-CCSEEEEEEEGGGGGGG-HHHHHHH-HH--HCSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHH-HHH-HHHHHhh-CCcceEEEEeCccchHH-HHHHHHH-hc--ccCCcEEEEeccc
Confidence 2357899999999644 222222 222 1222222 57899999999875332 2222222 21 2246789999999
Q ss_pred CCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHH
Q 017937 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (363)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~ 272 (363)
....... ....... .+ .|+..++. |++++
T Consensus 250 ~~a~~G~--als~~~~-~g-~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 250 GTAKGGG--ALSAVVA-TG-ATIKFIGT--GEKID 278 (433)
T ss_dssp GCSCHHH--HHHHHHH-HT-CEEEEEEC--CSSSS
T ss_pred ccccchH--HHHHHHH-HC-CCEEEEEC--CCChH
Confidence 8643221 1121211 12 36766664 77664
No 229
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.27 E-value=4.1e-06 Score=83.81 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=42.8
Q ss_pred eeEEEEeCCCCchhhhh----hHHHHHHHHHHhhcccc-ceEEEEeeCCCCC-chHHHHHHHhccccCCCCCEEEEEcCC
Q 017937 163 YQMILYDTPGIIEKKIH----MLDSMMMKNVRSAGINA-DCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKK 236 (363)
Q Consensus 163 ~~i~l~DtpG~~~~~~~----~~~~~~~~~~~~~~~~a-d~ii~VvD~~~~~-~~~~~~~~~~~~~~~~~~piilV~NK~ 236 (363)
..+.++|.||+...... .........+..++... .++++++++.... ......+...+.. .+.+.|+|+||.
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~--~g~rtI~VlTK~ 224 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP--EGDRTIGILTKP 224 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS--SCCSEEEEEECG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh--cCCceEEEecch
Confidence 46899999987543221 12233444555555443 5666666654332 2222334444433 578999999999
Q ss_pred CCCChh
Q 017937 237 DLIKPG 242 (363)
Q Consensus 237 Dl~~~~ 242 (363)
|+....
T Consensus 225 Dlv~~g 230 (608)
T 3szr_A 225 DLVDKG 230 (608)
T ss_dssp GGSSSS
T ss_pred hhcCcc
Confidence 998543
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.16 E-value=5.7e-06 Score=75.22 Aligned_cols=146 Identities=18% Similarity=0.221 Sum_probs=77.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHh------ccccceecCCCCce--------------EEEEEE---------------EEe
Q 017937 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT--------------RHRILG---------------ICS 159 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~------~~~~~~~~~~~~~t--------------~~~~~~---------------~~~ 159 (363)
...|+++|.+|+||||++..|. +.+...+...+... ...+.. ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999886 33332222211100 000000 001
Q ss_pred CCCeeEEEEeCCCCch--hhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCC-EEEEEcCC
Q 017937 160 GPEYQMILYDTPGIIE--KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKK 236 (363)
Q Consensus 160 ~~~~~i~l~DtpG~~~--~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~p-iilV~NK~ 236 (363)
..++.+.++||||..+ .... +...+ ..+. ....+|.+++|+|+..+ .......... . ...| ..+|+||+
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~-l~~el-~~i~-~~~~~d~vllVvda~~g-~~~~~~~~~~-~---~~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAA-LLEEM-KNIY-EAIKPDEVTLVIDASIG-QKAYDLASKF-N---QASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHH-HHHHH-HHHH-HHHCCSEEEEEEEGGGG-GGHHHHHHHH-H---HTCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHH-HHHHH-HHHH-HHhcCCEEEEEeeCCch-HHHHHHHHHH-H---hhCCCCEEEEeCC
Confidence 1467899999999654 2111 11111 1111 23478999999999754 2222222222 1 2355 78899999
Q ss_pred CCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHH
Q 017937 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (363)
Q Consensus 237 Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL 274 (363)
|...... ..... ....+ .|+..++ +|++++++
T Consensus 250 D~~~~~g--~~~~~-~~~~~-~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 250 DGTAKGG--GALSA-VAATG-ATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GGCTTHH--HHHHH-HHTTT-CCEEEEE--CSSSTTCE
T ss_pred CCCcchH--HHHHH-HHHHC-cCEEEEe--CCCChhhc
Confidence 9864322 11222 22222 3666665 67777553
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.02 E-value=2.4e-06 Score=77.84 Aligned_cols=84 Identities=20% Similarity=0.210 Sum_probs=59.4
Q ss_pred hccccceEEEEeeCCCCCchHHHHHHHhcccc-CCCCCEEEEEcCCCCCChhH----HHHHHHHHHhcCCCCcEEEcccC
Q 017937 192 AGINADCIVVLVDACKAPERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE----IAKKLEWYEKFTDVDEVIPVSAK 266 (363)
Q Consensus 192 ~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~i~~vSAk 266 (363)
.+.++|.+++|+|+..+..... .+.+++... ..++|.+||+||+|+.++.. +..+...+... + .+++.+||+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~-g-~~v~~~sa~ 159 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI-G-YDVYLTSSK 159 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH-T-CCEEECCHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC-C-CeEEEEecC
Confidence 4789999999999987664443 344433211 15789999999999987644 34444555433 3 389999999
Q ss_pred CCCCHHHHHHHH
Q 017937 267 YGHGVEDIRDWI 278 (363)
Q Consensus 267 ~g~gi~eL~~~i 278 (363)
+|.|+++|++.+
T Consensus 160 ~~~g~~~L~~~~ 171 (307)
T 1t9h_A 160 DQDSLADIIPHF 171 (307)
T ss_dssp HHTTCTTTGGGG
T ss_pred CCCCHHHHHhhc
Confidence 999998876643
No 232
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.95 E-value=8.7e-06 Score=77.90 Aligned_cols=62 Identities=24% Similarity=0.234 Sum_probs=41.5
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhcc---------------ccceecCCCCceEEEEEEEEeC-----------CCeeEE
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQ---------------KLSIVTNKPQTTRHRILGICSG-----------PEYQMI 166 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~---------------~~~~~~~~~~~t~~~~~~~~~~-----------~~~~i~ 166 (363)
.+...|+|+|.+++|||+|+|+|++. .....+ ..++|+....+++.+ ....+.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~-~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vv 143 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS-WRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSC-SCCSSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceec-CCCCCCCceeEEEEecCccccccCCCCcceEE
Confidence 35568999999999999999999874 222222 222444444444332 246799
Q ss_pred EEeCCCCch
Q 017937 167 LYDTPGIIE 175 (363)
Q Consensus 167 l~DtpG~~~ 175 (363)
++||||+.+
T Consensus 144 llDTeG~~~ 152 (447)
T 3q5d_A 144 LMDTQGTFD 152 (447)
T ss_dssp EEEEECCCS
T ss_pred EEcCCcccc
Confidence 999999854
No 233
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.86 E-value=4.1e-05 Score=73.21 Aligned_cols=118 Identities=23% Similarity=0.221 Sum_probs=65.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHh-------ccccceecCCCCce--------------EEEEEE---------------EE
Q 017937 115 SGYVAVLGKPNVGKSTLANQMI-------GQKLSIVTNKPQTT--------------RHRILG---------------IC 158 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~-------~~~~~~~~~~~~~t--------------~~~~~~---------------~~ 158 (363)
...|+++|.+|+||||++..|. |.++..+...+... .+.+.. ..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 4479999999999999999886 54443332222110 000000 00
Q ss_pred eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCC-EEEEEcCCC
Q 017937 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKD 237 (363)
Q Consensus 159 ~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~p-iilV~NK~D 237 (363)
...++.+.++||||..+.....+ ..+ ..+ ..+..++.+++|+|+..+. ........+. ...+ .-+|+||+|
T Consensus 180 ~~~~~D~VIIDTpG~l~~~~~l~-~~L-~~~-~~~~~p~~vllVvda~~g~-~~~~~~~~f~----~~l~i~gvVlnK~D 251 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVDEAMM-DEI-KQV-HASINPVETLFVVDAMTGQ-DAANTAKAFN----EALPLTGVVLTKVD 251 (433)
T ss_dssp HHTTCSEEEEECCCCCTTCHHHH-HHH-HHH-HHHSCCSEEEEEEETTBCT-THHHHHHHHH----HHSCCCCEEEECTT
T ss_pred HhCCCCEEEEECCCcccccHHHH-HHH-HHH-HHhhcCcceeEEeecchhH-HHHHHHHHHh----ccCCCeEEEEecCC
Confidence 12467899999999644221111 111 111 2244789999999998653 3222222221 1234 347899999
Q ss_pred CCC
Q 017937 238 LIK 240 (363)
Q Consensus 238 l~~ 240 (363)
...
T Consensus 252 ~~~ 254 (433)
T 2xxa_A 252 GDA 254 (433)
T ss_dssp SSS
T ss_pred CCc
Confidence 854
No 234
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.70 E-value=9e-05 Score=68.83 Aligned_cols=109 Identities=18% Similarity=0.233 Sum_probs=68.3
Q ss_pred ccccceEEEEeeCCCCCchHHHHHHHhccc-cCCCCCEEEEEcCCCCCChhH---HHHHHHHHHhcCCCCcEEEcccCCC
Q 017937 193 GINADCIVVLVDACKAPERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVSAKYG 268 (363)
Q Consensus 193 ~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~i~~vSAk~g 268 (363)
+.++|.+++|. +..+.... ..+.+++.. ...++|.+||+||+|+.++.. +..+...+.. .+ ++++.+||++|
T Consensus 128 ~anvD~v~iv~-a~~P~~~~-~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~-~G-~~v~~~Sa~~~ 203 (358)
T 2rcn_A 128 AANIDQIVIVS-AILPELSL-NIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRN-IG-YRVLMVSSHTQ 203 (358)
T ss_dssp EECCCEEEEEE-ESTTTCCH-HHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHT-TT-CCEEECBTTTT
T ss_pred HhcCCEEEEEE-eCCCCCCH-HHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHh-CC-CcEEEEecCCC
Confidence 68999999774 44544222 233333211 014678899999999997654 3333444433 23 37999999999
Q ss_pred CCHHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCceEEEEEEEEec
Q 017937 269 HGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVNVVSYKTR 333 (363)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~eiire~i~~~~~~evp~s~~i~~~~~~~~ 333 (363)
.|+++|...+.. . .+...+.+++||||++|.+.+...
T Consensus 204 ~gl~~L~~~~~G-----~-----------------------~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 204 DGLKPLEEALTG-----R-----------------------ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp BTHHHHHHHHTT-----S-----------------------EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred cCHHHHHHhcCC-----C-----------------------EEEEECCCCccHHHHHHHHhcccc
Confidence 999998876421 0 122345677777777777766554
No 235
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.61 E-value=0.00014 Score=66.88 Aligned_cols=148 Identities=20% Similarity=0.203 Sum_probs=75.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccc------cceecCCCCc-----------eEEEEEEEE------------------
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQK------LSIVTNKPQT-----------TRHRILGIC------------------ 158 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~------~~~~~~~~~~-----------t~~~~~~~~------------------ 158 (363)
+.-.++++|++||||||+++.|.+.- +......... .+..+....
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 34489999999999999999987532 1111100000 000000000
Q ss_pred eCCCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCC
Q 017937 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (363)
Q Consensus 159 ~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl 238 (363)
...+..+.++||+|..+.....+.+ +.. ... .-.+|-.++++|+..+. .....+..+.+. . ...++++||.|-
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~e-L~~-i~r-al~~de~llvLDa~t~~-~~~~~~~~~~~~--~-~it~iilTKlD~ 280 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDE-MKK-IAR-VTKPNLVIFVGDALAGN-AIVEQARQFNEA--V-KIDGIILTKLDA 280 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHH-HHH-HHH-HHCCSEEEEEEEGGGTT-HHHHHHHHHHHH--S-CCCEEEEECGGG
T ss_pred HhccchhhHHhhccchhHHHHHHHH-HHH-HHH-HhcCCCCEEEEecHHHH-HHHHHHHHHHHh--c-CCCEEEEeCcCC
Confidence 0113457889999975433332222 111 112 22478899999987653 333333332222 1 234788999997
Q ss_pred CChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHHH
Q 017937 239 IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (363)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~eL 274 (363)
..... ......... + .|+..++ +|++++++
T Consensus 281 ~a~~G--~~l~~~~~~-~-~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 281 DARGG--AALSISYVI-D-APILFVG--VGQGYDDL 310 (328)
T ss_dssp CSCCH--HHHHHHHHH-T-CCEEEEE--CSSSTTCE
T ss_pred ccchh--HHHHHHHHH-C-CCEEEEe--CCCCcccc
Confidence 43221 112222221 2 3677666 77777543
No 236
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.52 E-value=0.00066 Score=61.75 Aligned_cols=122 Identities=18% Similarity=0.149 Sum_probs=64.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc------ccceecCCC---Cc--------eEEEEEEEEe------------------
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKP---QT--------TRHRILGICS------------------ 159 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~------~~~~~~~~~---~~--------t~~~~~~~~~------------------ 159 (363)
...|+++|++|||||||++.|.+. ++....... .. .+..+.....
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~ 181 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMK 181 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 348999999999999999998742 111111100 00 0000000000
Q ss_pred CCCeeEEEEeCCCCchhhhh---hHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCC
Q 017937 160 GPEYQMILYDTPGIIEKKIH---MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236 (363)
Q Consensus 160 ~~~~~i~l~DtpG~~~~~~~---~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~ 236 (363)
..+..+.++||+|..+.... .+.+......+......+.+++++|+..... ....+..+.+. .+ ..++++||.
T Consensus 182 ~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~-~~~~~~~~~~~--~~-~t~iivTh~ 257 (304)
T 1rj9_A 182 ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN-GLEQAKKFHEA--VG-LTGVIVTKL 257 (304)
T ss_dssp HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH-HHHHHHHHHHH--HC-CSEEEEECT
T ss_pred hCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH-HHHHHHHHHHH--cC-CcEEEEECC
Confidence 11245779999997543222 2222111122233456788899999876643 33333333222 12 347889999
Q ss_pred CCCC
Q 017937 237 DLIK 240 (363)
Q Consensus 237 Dl~~ 240 (363)
|...
T Consensus 258 d~~a 261 (304)
T 1rj9_A 258 DGTA 261 (304)
T ss_dssp TSSC
T ss_pred cccc
Confidence 8753
No 237
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.41 E-value=0.00039 Score=62.98 Aligned_cols=118 Identities=16% Similarity=0.160 Sum_probs=61.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc-------ccceecCCCCc--eE------------EEEEE---------EEeCCCee
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ-------KLSIVTNKPQT--TR------------HRILG---------ICSGPEYQ 164 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~-------~~~~~~~~~~~--t~------------~~~~~---------~~~~~~~~ 164 (363)
...|+++|.+|+||||++..|.+. ++..+...+.. .. ..... .....++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 448999999999999999987532 22211111100 00 00000 00114568
Q ss_pred EEEEeCCCCchhhhhhHHHHHHHHHHhhcc--ccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCCh
Q 017937 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (363)
Q Consensus 165 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~--~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 241 (363)
+.++||||........+ ..+...+. ..+.+++|+|++...... .+..+....-...-+|+||.|....
T Consensus 185 lvIiDT~G~~~~~~~~~-----~el~~~l~~~~~~~~~lVl~at~~~~~~----~~~~~~~~~l~~~giVltk~D~~~~ 254 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYI-----DELKETIPFESSIQSFLVLSATAKYEDM----KHIVKRFSSVPVNQYIFTKIDETTS 254 (296)
T ss_dssp EEEEECCCCCTTSHHHH-----HHHHHHSCCCTTEEEEEEEETTBCHHHH----HHHTTTTSSSCCCEEEEECTTTCSC
T ss_pred EEEEeCCCCChhhHHHH-----HHHHHHHhhcCCCeEEEEEECCCCHHHH----HHHHHHHhcCCCCEEEEeCCCcccc
Confidence 99999999754322111 22222232 367889999987653322 2222222111223567799998643
No 238
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.39 E-value=0.00071 Score=65.22 Aligned_cols=149 Identities=17% Similarity=0.251 Sum_probs=73.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc------ccceecCCCCce-----------EEEEEEEE------------------e
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQTT-----------RHRILGIC------------------S 159 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~------~~~~~~~~~~~t-----------~~~~~~~~------------------~ 159 (363)
...|+|+|.+|||||||++.|.+. .+.......... +..+.... .
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAK 372 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHH
Confidence 347999999999999999998752 221111111100 00000010 0
Q ss_pred CCCeeEEEEeCCCCchhhhhhHHHH--HHHHHHhhc-cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCC
Q 017937 160 GPEYQMILYDTPGIIEKKIHMLDSM--MMKNVRSAG-INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236 (363)
Q Consensus 160 ~~~~~i~l~DtpG~~~~~~~~~~~~--~~~~~~~~~-~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~ 236 (363)
..++.+.++||+|..+.....+... ....++... ...+-+++|+|++.+.... ..+..+... .+. ..+|+||.
T Consensus 373 ~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al-~~ak~f~~~--~~i-tgvIlTKL 448 (503)
T 2yhs_A 373 ARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV-SQAKLFHEA--VGL-TGITLTKL 448 (503)
T ss_dssp HTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH-HHHHHHHHH--TCC-SEEEEECG
T ss_pred hcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH-HHHHHHHhh--cCC-CEEEEEcC
Confidence 1345789999999754333322211 111111111 1356789999988663222 222222222 223 35789999
Q ss_pred CCCChhHHHHHHHHHHhcCCCCcEEEcccCCCCCHHH
Q 017937 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (363)
Q Consensus 237 Dl~~~~~~~~~~~~~~~~~~~~~i~~vSAk~g~gi~e 273 (363)
|-..... ......... + .++..+ -+|+++++
T Consensus 449 D~takgG--~~lsi~~~~-~-~PI~fi--g~Ge~vdD 479 (503)
T 2yhs_A 449 DGTAKGG--VIFSVADQF-G-IPIRYI--GVGERIED 479 (503)
T ss_dssp GGCSCCT--HHHHHHHHH-C-CCEEEE--ECSSSGGG
T ss_pred CCccccc--HHHHHHHHH-C-CCEEEE--ecCCChhh
Confidence 9643221 112222221 1 255553 35777755
No 239
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.29 E-value=0.002 Score=58.94 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=39.8
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhc-----cccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcC
Q 017937 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG-----INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (363)
Q Consensus 161 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~-----~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK 235 (363)
.++.+.++||||..+.....+.. + ..+...+ ..+|.+++|+|+..+ .........+.. .-...-+|+||
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~e-L-~~~~~vi~~~~p~~~d~vllVl~a~~~-~~~l~~~~~~~~---~~~i~GvVltk 263 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAE-L-EKMNKIIQQVEKSAPHEVLLVIDATTG-QNGVIQAEEFSK---VADVSGIILTK 263 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHH-H-HHHHHHHHTTCTTCCSEEEEEEEGGGT-HHHHHHHHHHTT---TSCCCEEEEEC
T ss_pred cCCCEEEEcCCCcccccHHHHHH-H-HHHHHHHhcccCCCCceEEEEEECCCc-HHHHHHHHHHhh---cCCCcEEEEeC
Confidence 35789999999965432222211 1 1111111 347899999999854 222222222221 11234578999
Q ss_pred CCCCC
Q 017937 236 KDLIK 240 (363)
Q Consensus 236 ~Dl~~ 240 (363)
.|...
T Consensus 264 ~d~~~ 268 (320)
T 1zu4_A 264 MDSTS 268 (320)
T ss_dssp GGGCS
T ss_pred CCCCC
Confidence 99754
No 240
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.22 E-value=8.1e-05 Score=67.76 Aligned_cols=56 Identities=29% Similarity=0.303 Sum_probs=31.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhccccceecCCC-------CceEEEEEEEEeCCCeeEEEEeCCCCch
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTTRHRILGICSGPEYQMILYDTPGIIE 175 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~i~l~DtpG~~~ 175 (363)
..++++|++|||||||+|.|.+.......... .+|+.... .... ...++||||+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~~--~g~v~dtpg~~~ 236 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHTS--GGLVADTPGFSS 236 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEET--TEEEESSCSCSS
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhcC--CEEEecCCCccc
Confidence 37999999999999999999986533222211 23332211 1111 247899999743
No 241
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.18 E-value=0.00047 Score=58.44 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=44.2
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhcccc---CCCCCEEEEEcCCCC
Q 017937 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH---KDKLPILLVLNKKDL 238 (363)
Q Consensus 162 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~---~~~~piilV~NK~Dl 238 (363)
.+.+.++|||+..... ....+..+|.+++++..+... .....+.+.++.. ..+.++.+|+|++|.
T Consensus 75 ~yD~viiD~~~~~~~~-----------~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~ 142 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSVI-----------TSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIE 142 (206)
T ss_dssp TSSEEEEECCSSSSHH-----------HHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT
T ss_pred CCCEEEEECCCCCCHH-----------HHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 4789999999853211 222356799999999987655 4444444544432 235678999999996
Q ss_pred C
Q 017937 239 I 239 (363)
Q Consensus 239 ~ 239 (363)
.
T Consensus 143 ~ 143 (206)
T 4dzz_A 143 M 143 (206)
T ss_dssp T
T ss_pred C
Confidence 4
No 242
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.06 E-value=0.00018 Score=61.12 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=29.8
Q ss_pred CCCCCcEEEEEcCCCCChHHHHHHHhcccc-ceecCCCCceEEE
Q 017937 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHR 153 (363)
Q Consensus 111 ~~~~~~~i~i~G~~~~GKSSLln~l~~~~~-~~~~~~~~~t~~~ 153 (363)
|..+...|+|+|++|||||||+++|.+... ........||+..
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p 58 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPP 58 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCC
Confidence 444556899999999999999999987532 1234444555544
No 243
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.97 E-value=0.00046 Score=64.03 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKL 140 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~ 140 (363)
..++++|++|||||||+|.|.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3799999999999999999998654
No 244
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.97 E-value=0.0025 Score=60.57 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=39.9
Q ss_pred CCeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCCC
Q 017937 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (363)
Q Consensus 161 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 240 (363)
.++.+.++||||..+.....+. .. ..+.. ...+|.+++|+|+..+ .........+... . ...-+|+||.|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~-el-~~i~~-~~~pd~vlLVvDa~tg-q~av~~a~~f~~~--l-~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMG-EL-ARLKE-VLGPDEVLLVLDAMTG-QEALSVARAFDEK--V-GVTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHH-HH-HHHHH-HHCCSEEEEEEEGGGT-THHHHHHHHHHHH--T-CCCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHH-HH-HHhhh-ccCCceEEEEEeccch-HHHHHHHHHHHhc--C-CceEEEEeCcCCcc
Confidence 4567999999996432211111 11 11111 2368899999999765 3332222222211 1 23567899999753
No 245
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.96 E-value=0.00012 Score=71.03 Aligned_cols=102 Identities=12% Similarity=0.083 Sum_probs=54.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccccceecCCCCceEEEEE----EEEeCCCeeEEEEeCCCCchhhhhhHHHH---HHH
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL----GICSGPEYQMILYDTPGIIEKKIHMLDSM---MMK 187 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~~~~~~~~~~~t~~~~~----~~~~~~~~~i~l~DtpG~~~~~~~~~~~~---~~~ 187 (363)
...|+++|.+|+||||+.++|...-.. .. ..|..... ...........+||..| ...+...... ...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~---~~-~~t~~~~~d~~r~~~~g~~~~~~ifd~~g--~~~~r~re~~~~~~l~ 112 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF---IG-VPTREFNVGQYRRDMVKTYKSFEFFLPDN--EEGLKIRKQCALAALN 112 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH---TT-CCEEEEEHHHHHHHHHCSCCCGGGGCTTC--HHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc---cC-CCceEEecchhhhhhccCCCcccccCCCC--HHHHHHHHHHHHHHHH
Confidence 448999999999999999998754221 00 01111000 00001112335678887 3222111111 122
Q ss_pred HHHhhccccceEEEEeeCCCCCchHHHHHHHhccc
Q 017937 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGD 222 (363)
Q Consensus 188 ~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~ 222 (363)
....++..+.+.++|+|+++........+...++.
T Consensus 113 ~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 113 DVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHh
Confidence 33555666788899999998765444455444443
No 246
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.95 E-value=0.0038 Score=57.04 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.+.++|+|..|+|||||++.|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 457999999999999999999965
No 247
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.93 E-value=0.001 Score=60.37 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
..++++|++|||||||+|.|. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 379999999999999999998 54
No 248
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.84 E-value=0.00047 Score=62.73 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
..|+++|.+|+||||++..|.+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 3799999999999999998764
No 249
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.73 E-value=0.01 Score=55.07 Aligned_cols=121 Identities=15% Similarity=0.124 Sum_probs=62.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc------cceecCCCCc--------e---EEEEEEEEe-------------------
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK------LSIVTNKPQT--------T---RHRILGICS------------------- 159 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~------~~~~~~~~~~--------t---~~~~~~~~~------------------- 159 (363)
-.|+++|..|||||||+..|.+.- +......... + +..+.....
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~ 237 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 237 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHH
Confidence 379999999999999999987531 1111111000 0 000000110
Q ss_pred CCCeeEEEEeCCCCchhhhh---hHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCC
Q 017937 160 GPEYQMILYDTPGIIEKKIH---MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236 (363)
Q Consensus 160 ~~~~~i~l~DtpG~~~~~~~---~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~ 236 (363)
..+....++||.|..+.... .+.+......+......+-+++|+|++.+.+... ....+.+. .+. .+++++|.
T Consensus 238 ~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~-~~~~~~~~--~g~-t~iiiThl 313 (359)
T 2og2_A 238 EEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP-QAREFNEV--VGI-TGLILTKL 313 (359)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH-HHHHHHHH--TCC-CEEEEESC
T ss_pred hCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH-HHHHHHHh--cCC-eEEEEecC
Confidence 01234678999997543222 2222221222233456777899999766544332 22222222 233 46778998
Q ss_pred CCCC
Q 017937 237 DLIK 240 (363)
Q Consensus 237 Dl~~ 240 (363)
|-..
T Consensus 314 D~~~ 317 (359)
T 2og2_A 314 DGSA 317 (359)
T ss_dssp TTCS
T ss_pred cccc
Confidence 8753
No 250
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.72 E-value=0.0011 Score=60.19 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQKL 140 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~~ 140 (363)
..++++|++|+|||||+|.|.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3799999999999999999998654
No 251
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.42 E-value=0.0018 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..++|+|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999874
No 252
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.39 E-value=0.13 Score=45.28 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 253
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.38 E-value=0.0029 Score=54.01 Aligned_cols=68 Identities=15% Similarity=0.105 Sum_probs=41.8
Q ss_pred CCeeEEEEeCCCC-chhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCCC
Q 017937 161 PEYQMILYDTPGI-IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (363)
Q Consensus 161 ~~~~i~l~DtpG~-~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 239 (363)
..+.+.++|||+. .... ....+..+|.+|+++..+...-.....+.+.++.. .+.++.+|+|++|..
T Consensus 66 ~~yD~viiD~p~~~~~~~-----------~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDED-----------LEALADGCDLLVIPSTPDALALDALMLTIETLQKL-GNNRFRILLTIIPPY 133 (209)
T ss_dssp GGCSEEEEEEECCCSSSH-----------HHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHT-CSSSEEEEECSBCCT
T ss_pred hcCCEEEEeCCCCcCcHH-----------HHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhc-cCCCEEEEEEecCCc
Confidence 3478999999984 3221 12235689999999987643222222233333331 156789999999976
Q ss_pred C
Q 017937 240 K 240 (363)
Q Consensus 240 ~ 240 (363)
.
T Consensus 134 ~ 134 (209)
T 3cwq_A 134 P 134 (209)
T ss_dssp T
T ss_pred c
Confidence 4
No 254
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.31 E-value=0.002 Score=53.73 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
+++++|++|+|||||++.|.+.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999988753
No 255
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.29 E-value=0.00095 Score=56.05 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=25.4
Q ss_pred EEEEcCCCCChHHHHHHHhcccc-ceecCCCCceEEE
Q 017937 118 VAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHR 153 (363)
Q Consensus 118 i~i~G~~~~GKSSLln~l~~~~~-~~~~~~~~~t~~~ 153 (363)
|+|+|++|||||||+++|+.... ......+.||+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 89999999999999999986431 1223444555543
No 256
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.26 E-value=0.013 Score=52.90 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=38.5
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhcccc--CCCCCEE-EEEcCCCC
Q 017937 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH--KDKLPIL-LVLNKKDL 238 (363)
Q Consensus 162 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~--~~~~pii-lV~NK~Dl 238 (363)
.+.++++|||+...... +...+..||.+|+|+......-.....+.+.++.. ..+.+++ +|+|+++.
T Consensus 156 ~yD~ViiD~p~~~~~~~----------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG----------FAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCGG----------GGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchHH----------HHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 47899999987432110 11236789999999986532212222223333321 1345544 89999984
No 257
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.24 E-value=0.0077 Score=57.33 Aligned_cols=23 Identities=35% Similarity=0.323 Sum_probs=19.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHh
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMI 136 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~ 136 (363)
+...|+|+|..++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 33478999999999999999654
No 258
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.14 E-value=0.0024 Score=54.06 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.++|+|++|+|||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999874
No 259
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.94 E-value=0.012 Score=48.41 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..+.+.|++|+|||+|+.++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999988754
No 260
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.90 E-value=0.0045 Score=52.70 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
...|+|+|++|+|||||++.|.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999998874
No 261
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.89 E-value=0.0046 Score=52.12 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.++++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 7999999999999999999875
No 262
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.89 E-value=0.004 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++|+|++|||||||++.|.|-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 79999999999999999998753
No 263
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.88 E-value=0.005 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..|+++|++|+|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999875
No 264
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.86 E-value=0.0039 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++|+|++|||||||++.|.+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998643
No 265
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.79 E-value=0.0065 Score=49.93 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+...|+++|.+|+||||+++.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 344799999999999999999865
No 266
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.78 E-value=0.0044 Score=53.31 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..++|+|++|+|||||++.|.+.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37999999999999999999874
No 267
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.77 E-value=0.0052 Score=52.92 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
..++|+|++|||||||++.|.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 379999999999999999998854
No 268
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.063 Score=50.37 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
-|.+.|+||+|||+|+.++.+.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 5999999999999999999874
No 269
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.70 E-value=0.0065 Score=51.71 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
..|+|+|++|||||||++.|.+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 379999999999999999998753
No 270
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.68 E-value=0.0058 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..|+|+|.+|+|||||++.|.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 271
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.66 E-value=0.0059 Score=53.19 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
-.++|+|+.|+|||||++.|.|-.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 379999999999999999998853
No 272
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.058 Score=51.28 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
-|.+.|+||+|||+|+.++.+.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 6999999999999999999874
No 273
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.60 E-value=0.0059 Score=50.26 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.++++|++|+|||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 799999999999999998654
No 274
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.14 Score=48.87 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
-|.+.|+||+|||+|+.++.+.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHhc
Confidence 6999999999999999999864
No 275
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.56 E-value=0.0066 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|+.|+|||||++.+.|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998853
No 276
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.53 E-value=0.0072 Score=49.21 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|+.|+|||||++.|.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 79999999999999999998754
No 277
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.51 E-value=0.0081 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
..|+|+|++||||||+++.|.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 379999999999999999998653
No 278
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.067 Score=50.73 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
-|.+.|+||+|||+|+.++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999864
No 279
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.44 E-value=0.008 Score=52.53 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
-.++++|+.|+|||||++.+.|-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999853
No 280
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.43 E-value=0.0084 Score=50.59 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
...|+|+|.+|+|||||++.|.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 347999999999999999998753
No 281
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.43 E-value=0.0079 Score=52.43 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
-.++|+|+.|+|||||++.|.|-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999998854
No 282
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.083 Score=49.89 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
-|.+.|+||+|||+|+.++.+.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHH
Confidence 6999999999999999999874
No 283
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.36 E-value=0.0087 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+.++++|.+|+|||||+++|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 47999999999999999999864
No 284
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.35 E-value=0.0086 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++|+|+.|+|||||++.|.|-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998853
No 285
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.35 E-value=0.0087 Score=52.55 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++|+|+.|+|||||++.|.|-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998853
No 286
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.35 E-value=0.0085 Score=53.50 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++|+|+.|+|||||++.|.|--
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 79999999999999999999853
No 287
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.35 E-value=0.0085 Score=53.09 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++|+|+.|+|||||++.|.|-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
No 288
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.34 E-value=0.0097 Score=52.71 Aligned_cols=25 Identities=40% Similarity=0.493 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+...++|+|++|+|||||++.+.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 3447999999999999999999874
No 289
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.33 E-value=0.0089 Score=52.81 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|+.|+|||||++.+.|-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998853
No 290
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.33 E-value=0.012 Score=48.88 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+...|+++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4558999999999999999998764
No 291
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.33 E-value=0.0087 Score=53.16 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|+.|+|||||++.|.|-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999999853
No 292
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.32 E-value=0.01 Score=51.85 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 017937 116 GYVAVLGKPNVGKSTLANQMI 136 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~ 136 (363)
..|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999998
No 293
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.31 E-value=0.0091 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
-.++|+|+.|+|||||++.|.|-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999853
No 294
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.31 E-value=0.0086 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|+.|+|||||++.|.|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999998853
No 295
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.27 E-value=0.008 Score=51.31 Aligned_cols=22 Identities=36% Similarity=0.265 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.++++|+.|+|||||++.+.|-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999986
No 296
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.27 E-value=0.0082 Score=49.08 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.|+++|.+|+||||+.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 297
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.24 E-value=0.0099 Score=50.31 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
...|+|+|++|||||||+++|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346999999999999999999753
No 298
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.23 E-value=0.0099 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
-.++|+|+.|+|||||++.|.|-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 37999999999999999999984
No 299
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.23 E-value=0.01 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|+.|+|||||++.|.|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 300
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.22 E-value=0.0099 Score=52.69 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.++|+|+.|+|||||++.|.|-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 7999999999999999999885
No 301
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.21 E-value=0.0087 Score=50.25 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998874
No 302
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.19 E-value=0.01 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|+.|+|||||++.|.|-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
No 303
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.18 E-value=0.011 Score=52.01 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.++|+|+.|+|||||++.|.|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
No 304
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.17 E-value=0.011 Score=52.28 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++|+|+.|+|||||++.|.|-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
No 305
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.16 E-value=0.011 Score=53.43 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.-.++|+|++|+|||||++.|.+-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 338999999999999999998863
No 306
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.16 E-value=0.011 Score=52.73 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
-.++|+|+.|+|||||++.|.|-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999853
No 307
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.16 E-value=0.011 Score=48.01 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHH
Q 017937 117 YVAVLGKPNVGKSTLANQM 135 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l 135 (363)
.|+++|.+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6999999999999999999
No 308
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.13 E-value=0.015 Score=49.09 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 445899999999999999999864
No 309
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.13 E-value=0.011 Score=52.46 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.++|+|+.|+|||||++.|.|-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
No 310
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.12 E-value=0.011 Score=49.19 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.++++|++|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999975
No 311
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.11 E-value=0.011 Score=52.87 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++|+|+.|+|||||++.|.|-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
No 312
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.03 E-value=0.0061 Score=50.35 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.++|+|.+|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999874
No 313
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.02 E-value=0.012 Score=51.80 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|+.|+|||||++.+.|-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 314
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.01 E-value=0.013 Score=52.12 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|+.|+|||||++.|.|-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999998853
No 315
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.00 E-value=0.21 Score=43.42 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..|.+.|+||+|||+|+.++...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998763
No 316
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.98 E-value=0.014 Score=49.14 Aligned_cols=24 Identities=33% Similarity=0.281 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
...|+|+|.+|+||||+++.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998764
No 317
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.97 E-value=0.15 Score=44.89 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
...+.+.|++|+|||+|+.++...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 347999999999999999998764
No 318
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.97 E-value=0.013 Score=47.59 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 319
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.95 E-value=0.063 Score=48.20 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.+.+.|+||+|||+|+.++...
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5777799999999999998753
No 320
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.95 E-value=0.014 Score=53.15 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+...|+|+|++|+|||||++.|.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 3447999999999999999998874
No 321
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.88 E-value=0.017 Score=47.33 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.|++.|.+||||||+.+.|..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999875
No 322
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.86 E-value=0.033 Score=44.22 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.|.+.|++|+|||++..++...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 6999999999999999998653
No 323
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.85 E-value=0.012 Score=48.50 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..++++|++|+|||||++++.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998874
No 324
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.84 E-value=0.015 Score=51.57 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|+.|+|||||++.|.|-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999854
No 325
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.83 E-value=0.011 Score=51.07 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=15.7
Q ss_pred cEEEEEcCCCCChHHHHHHHh-cc
Q 017937 116 GYVAVLGKPNVGKSTLANQMI-GQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~-~~ 138 (363)
..++|+|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 379999999999999999998 64
No 326
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.83 E-value=0.016 Score=48.00 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 327
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.83 E-value=0.016 Score=47.43 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.|++.|.||+||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999976
No 328
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.81 E-value=0.017 Score=47.55 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+.++++|.+|+|||||+.+|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 329
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.78 E-value=0.018 Score=48.69 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+...|+|.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999874
No 330
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.76 E-value=0.02 Score=47.19 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+...|+++|.+|+||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 344799999999999999999863
No 331
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.75 E-value=0.015 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
-.++|+|++|+|||||++.|.+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999874
No 332
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.74 E-value=0.017 Score=53.58 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
....|+|+|++|+|||||++.+++.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3448999999999999999999864
No 333
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.74 E-value=0.017 Score=48.55 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..|+|+|.+|+||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998653
No 334
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.74 E-value=0.017 Score=49.50 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
..|+|+|.+|+||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999865
No 335
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.73 E-value=0.01 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
-.++|+|++|+|||||++.|.|-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 38999999999999999999874
No 336
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.69 E-value=0.018 Score=48.38 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
..|+++|.+||||||+...|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999874
No 337
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.68 E-value=0.024 Score=47.90 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..|+|+|.+|+||||+++.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999999875
No 338
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.67 E-value=0.016 Score=46.53 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999874
No 339
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.66 E-value=0.017 Score=48.65 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
+|+|+|.+||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999976
No 340
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.64 E-value=0.024 Score=47.67 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+...|+|+|.+|+||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 444899999999999999998864
No 341
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.63 E-value=0.02 Score=48.23 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999865
No 342
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.61 E-value=0.021 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
-.++|+|+.|+|||||++.|.|-.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 379999999999999999998853
No 343
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.61 E-value=0.021 Score=47.46 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
..|++.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 344
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.60 E-value=0.018 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|++|||||||++.+.|-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 79999999999999999999854
No 345
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.58 E-value=0.021 Score=51.73 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+...|+|+|.+|+|||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3348999999999999999998873
No 346
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.58 E-value=0.02 Score=47.50 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
...|++.|.+||||||+...|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
No 347
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.54 E-value=0.024 Score=47.82 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
...|+|+|.+|+|||||++.|.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999876
No 348
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.54 E-value=0.17 Score=46.69 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..+.|.|++|+|||+|++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 349
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.51 E-value=0.022 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..|+|+|+.|+|||||++.|.+.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998763
No 350
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.49 E-value=0.024 Score=51.00 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+...|+|+|.+|+|||||++.|.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999998865
No 351
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.48 E-value=0.023 Score=47.59 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+...|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4458999999999999999998764
No 352
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.46 E-value=0.11 Score=43.51 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.+.+.|++|+|||+|+..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
No 353
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.46 E-value=0.021 Score=53.04 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
-.++|+|++|+|||||++.+.|-.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 379999999999999999998853
No 354
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.44 E-value=0.021 Score=52.84 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|++|+|||||++.|.|-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999998854
No 355
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.43 E-value=0.022 Score=47.19 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 356
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.43 E-value=0.035 Score=48.09 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
.-.++++|++|+|||||++.+.+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 33799999999999999999884
No 357
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.41 E-value=0.023 Score=47.60 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 699999999999999999875
No 358
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.40 E-value=0.025 Score=51.56 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+...|+|+|.+|||||||++.|.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3447999999999999999988653
No 359
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.39 E-value=0.022 Score=47.03 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
..|+++|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 360
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.39 E-value=0.023 Score=47.89 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.|+++|.+||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999976
No 361
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.38 E-value=0.033 Score=46.78 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=20.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+...|+|.|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 334799999999999999998864
No 362
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.37 E-value=0.022 Score=52.79 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|++|+|||||++.|.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 79999999999999999998853
No 363
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.34 E-value=0.32 Score=44.15 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+++.+.|.|+||+|||++++.++..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999999998753
No 364
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.32 E-value=0.023 Score=52.77 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
-.++++|++|+|||||++.|.|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 379999999999999999998853
No 365
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.32 E-value=0.02 Score=52.44 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.++++|++|+|||||++.|.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999885
No 366
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.32 E-value=0.03 Score=46.36 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+...|+++|.+|+||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3447999999999999999998653
No 367
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.32 E-value=0.12 Score=48.96 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
...|+++|.+|+||||+.++|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 347999999999999999998753
No 368
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.31 E-value=0.023 Score=53.05 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|++|+|||||++.|.|-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 79999999999999999998854
No 369
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.31 E-value=0.16 Score=44.98 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..+.+.|+||+|||+|+.++...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 36999999999999999998753
No 370
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.30 E-value=0.022 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..++|+|++|+|||||++.|.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999884
No 371
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.27 E-value=0.028 Score=46.71 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
...|++.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999998864
No 372
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.27 E-value=0.025 Score=48.86 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+...|+|.|..|+|||||++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3447999999999999999998875
No 373
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.26 E-value=0.024 Score=52.85 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
...|+|+|++|+|||||++.|.+.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999874
No 374
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.26 E-value=0.027 Score=46.52 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
..|+++|.+||||||+...|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999863
No 375
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.26 E-value=0.029 Score=47.05 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
...|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 347999999999999999998754
No 376
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.25 E-value=0.018 Score=53.55 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
..+++|+|++|+|||||++.|.|..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998753
No 377
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.25 E-value=0.024 Score=52.82 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|++|+|||||++.|.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 79999999999999999998854
No 378
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.24 E-value=0.028 Score=47.99 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
...|+++|.+||||||+...|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999998864
No 379
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.21 E-value=0.025 Score=52.73 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
-.++++|++|+|||||++.|.|-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 379999999999999999998753
No 380
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.17 E-value=0.035 Score=45.87 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 381
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.09 E-value=0.022 Score=46.89 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=16.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+...|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 334799999999999999999863
No 382
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.09 E-value=0.033 Score=48.84 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMI 136 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~ 136 (363)
...|+|+|++|+||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3489999999999999999998
No 383
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.08 E-value=0.028 Score=47.74 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999854
No 384
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.08 E-value=0.032 Score=50.04 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
...|+++|.+||||||+..+|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999975
No 385
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.05 E-value=0.029 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+...|+|+|++|+|||||++.+++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 3447999999999999999999874
No 386
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.04 E-value=0.025 Score=50.40 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
-++++|++|+|||||++++.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999874
No 387
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.03 E-value=0.031 Score=48.00 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
...|+|.|.+||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998863
No 388
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.97 E-value=0.029 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
-.++|+|++|+|||||++.|.|-
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 37999999999999999999874
No 389
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.94 E-value=0.031 Score=47.50 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
+|+|+|.+||||||+...|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999854
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.94 E-value=0.033 Score=45.79 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
...|+++|.+|+||||+.+.|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999876
No 391
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.92 E-value=0.21 Score=44.62 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=19.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
...+.|.|+||+|||+++.++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999987654
No 392
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.86 E-value=0.29 Score=44.47 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..|.+.|+||+|||+|+.++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 36999999999999999998764
No 393
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.82 E-value=0.021 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|++|+|||||++.|.|-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 79999999999999999999854
No 394
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.82 E-value=0.029 Score=49.01 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.++++|++|+|||||++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999874
No 395
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.79 E-value=0.09 Score=49.91 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.|.+.|+||+|||+|+.++.+.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHH
Confidence 6999999999999999999874
No 396
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.78 E-value=0.035 Score=47.48 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 397
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.77 E-value=0.041 Score=45.31 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
...+|+|+.|+|||||+.+|..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999864
No 398
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.77 E-value=0.034 Score=50.24 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
-.++++|+.||||||+++.|.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999875
No 399
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.76 E-value=0.031 Score=54.41 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.++|+|++|+|||||+++|++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999874
No 400
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.65 E-value=0.034 Score=45.84 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.|+|+|.+|+||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988854
No 401
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.61 E-value=0.041 Score=47.91 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+..+|+|.|.+||||||+...|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344899999999999999999864
No 402
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.60 E-value=0.035 Score=45.49 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
+|+|+|.+|+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 403
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.56 E-value=0.044 Score=45.66 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
..|++.|.+|+||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 404
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.56 E-value=0.13 Score=45.94 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..+.+.|+||+|||+|+.++.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 37999999999999999998763
No 405
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.54 E-value=0.041 Score=44.53 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 406
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.54 E-value=0.17 Score=45.52 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.|.+.|++|+|||+|+.++.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 6999999999999999998864
No 407
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.51 E-value=0.021 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|++|+|||||++.|.|-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999998854
No 408
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.50 E-value=0.19 Score=45.51 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..|.+.|+||+|||+|+.++...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 37999999999999999998754
No 409
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.48 E-value=0.033 Score=48.83 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+...|+++|.+|+||||+...|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999999865
No 410
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.46 E-value=0.038 Score=47.18 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
-.++++|++|+|||||+..+.+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999999864
No 411
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.42 E-value=0.037 Score=53.08 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+..+++|+|+.|+|||||++.|.|-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3448999999999999999999874
No 412
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.40 E-value=0.045 Score=46.51 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 413
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.39 E-value=0.039 Score=47.04 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 414
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.33 E-value=0.063 Score=45.99 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=19.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
...|.|+|+|||||+|....|..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 33577899999999999988864
No 415
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.32 E-value=0.048 Score=46.37 Aligned_cols=22 Identities=41% Similarity=0.412 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 416
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.29 E-value=0.27 Score=44.16 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+.+.+.|++|+|||+++.++...
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999988754
No 417
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.29 E-value=0.047 Score=45.20 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 418
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.29 E-value=0.021 Score=48.29 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.|+|.|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 419
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.27 E-value=0.2 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
-|.+.|+||+|||+|+.++.+.
T Consensus 240 GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999864
No 420
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.26 E-value=0.04 Score=50.48 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 6999999999999999998864
No 421
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.25 E-value=0.041 Score=48.87 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.|+++|++|+|||||++++.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999874
No 422
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.23 E-value=0.05 Score=47.55 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+...|+|.|.+|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999998865
No 423
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.22 E-value=0.041 Score=49.31 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
-.++|+|++|+|||||+..+.+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 37999999999999999998875
No 424
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.21 E-value=0.049 Score=45.24 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998653
No 425
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.12 E-value=0.056 Score=45.79 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
...|+++|.+|+||||+.+.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998865
No 426
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.10 E-value=0.048 Score=44.32 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 427
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.08 E-value=0.046 Score=47.99 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.|+|+|++|+|||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999864
No 428
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.07 E-value=0.052 Score=50.06 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
+.-+++|+|+.|+|||||++.|.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999998853
No 429
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.04 E-value=0.4 Score=43.25 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=17.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.+.+.|++|+|||+++.++...
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHHH
Confidence 3555677999999999998653
No 430
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.01 E-value=0.068 Score=47.68 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+...|+|.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999999873
No 431
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.01 E-value=0.062 Score=46.31 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
...|+|+|.+|+||||+...|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999998864
No 432
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.00 E-value=0.051 Score=47.67 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
...|+|+|.+|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998865
No 433
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.89 E-value=0.19 Score=46.88 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..|.|.|++|+|||+|+.++...
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999998653
No 434
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.89 E-value=0.061 Score=45.67 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
+|+++|+|||||+|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 435
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.86 E-value=0.067 Score=52.37 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|+.|+|||||++.|.|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999999853
No 436
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.85 E-value=0.25 Score=45.71 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 017937 116 GYVAVLGKPNVGKSTLANQMI 136 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~ 136 (363)
+..+|+|+.|+|||||+++++
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 367899999999999999986
No 437
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.83 E-value=0.068 Score=45.20 Aligned_cols=23 Identities=35% Similarity=0.180 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
...++++|++|+|||||+..+.+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 33799999999999999999987
No 438
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.83 E-value=0.06 Score=46.11 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 439
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.81 E-value=0.065 Score=45.83 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
...+.|.|++|+|||+|+..+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998753
No 440
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.80 E-value=0.073 Score=45.94 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+...|+|.|.+|+||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3447999999999999999998753
No 441
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.77 E-value=0.065 Score=46.43 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=20.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+...|+|.|++|+||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999998863
No 442
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.73 E-value=0.053 Score=44.26 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
...+.+.|++|+|||+|+.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999988654
No 443
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.73 E-value=0.21 Score=48.65 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..+.|.|++|+|||+++.++...
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 444
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.71 E-value=0.056 Score=52.04 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
-.++|+|+.|+|||||++.|.|
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4799999999999999999875
No 445
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.70 E-value=0.059 Score=52.83 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|+.|+|||||++.|.|..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999853
No 446
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.67 E-value=0.068 Score=44.75 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..+.+.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998763
No 447
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.60 E-value=0.058 Score=46.40 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
...++|+|++|+|||||+..+.+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 347999999999999999999874
No 448
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.59 E-value=0.077 Score=42.44 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 017937 116 GYVAVLGKPNVGKSTLANQMI 136 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~ 136 (363)
+..+|+|+.|+|||||+.++.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999975
No 449
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.56 E-value=0.077 Score=45.83 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+...|+|+|.+|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999998864
No 450
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.55 E-value=0.17 Score=48.86 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
..|.|.|+||+|||+++.++..
T Consensus 239 ~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHHH
Confidence 3699999999999999999865
No 451
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.50 E-value=0.07 Score=46.64 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.|.++|++|+|||+|+.++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999999764
No 452
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.48 E-value=0.073 Score=43.12 Aligned_cols=21 Identities=29% Similarity=0.331 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.|+|.|.+||||||+...|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998854
No 453
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.47 E-value=0.073 Score=50.72 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCChHHHHHHHhccc
Q 017937 113 HKSGYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 113 ~~~~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.+.-+++|+|++|+|||||++.|.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 345589999999999999999998853
No 454
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.46 E-value=0.073 Score=52.72 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
-.++++|++|+|||||++.|.|-.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 389999999999999999998853
No 455
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.38 E-value=0.078 Score=49.45 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
..++++|++|+|||||++.|.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999999986
No 456
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.34 E-value=0.22 Score=45.98 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..|.|.|++|+|||+|+.++...
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998753
No 457
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.13 E-value=0.083 Score=52.31 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
-.++++|++|+|||||++.|.|-.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 389999999999999999998853
No 458
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.12 E-value=0.072 Score=52.89 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
-.++++|++|+|||||++.|.|-.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 389999999999999999998853
No 459
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.11 E-value=0.3 Score=50.64 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..++++|+||+|||+|+..+...
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999998764
No 460
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.09 E-value=0.077 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++++|+.|+|||||++.|.|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 89999999999999999999854
No 461
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.98 E-value=0.08 Score=52.60 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.-.++++|++|+|||||++.|.|-.
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3389999999999999999998853
No 462
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.89 E-value=0.097 Score=43.86 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
...|+++|.+||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 447999999999999999988653
No 463
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.82 E-value=0.085 Score=52.46 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
-.++++|+.|+|||||++.|.|.-
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 389999999999999999999854
No 464
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.80 E-value=0.1 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
.+.|+|+|++|||||+|...|..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 34689999999999999999864
No 465
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.75 E-value=0.088 Score=51.55 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++|+|+.|+|||||++.|.|-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999854
No 466
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.59 E-value=0.07 Score=52.81 Aligned_cols=24 Identities=38% Similarity=0.339 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.-.++++|++|+|||||++.+.|-
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 338999999999999999998875
No 467
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.57 E-value=0.083 Score=44.76 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.+++.|+||+|||+++.+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999998887764
No 468
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.51 E-value=0.14 Score=43.20 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
..|+|+|++|+|||+|...|...-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 369999999999999999997643
No 469
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.49 E-value=0.099 Score=51.20 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhccc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
-.++|+|+.|+|||||++.|.|..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 470
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.46 E-value=0.12 Score=43.29 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 471
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.36 E-value=0.14 Score=45.89 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..+.++|++|+|||+++.++.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999988753
No 472
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.33 E-value=0.089 Score=52.15 Aligned_cols=23 Identities=48% Similarity=0.554 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
-.++++|++|+|||||++.|.|-
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999874
No 473
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.33 E-value=0.12 Score=45.89 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+.-.++|+|++|+|||||+..+.+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 334799999999999999999886
No 474
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.25 E-value=0.58 Score=44.48 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..|.+.|+||+|||+|+.++...
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998764
No 475
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.24 E-value=0.12 Score=46.27 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.|+++|.+|+||||+.++|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 476
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.17 E-value=0.12 Score=43.78 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.+.|.|++|+|||+|+..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 477
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.10 E-value=0.15 Score=41.82 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKL 140 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~ 140 (363)
-|+|.|++|+||||+.-.|.....
T Consensus 18 gvli~G~SGaGKStlal~L~~rG~ 41 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDRGH 41 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHcCC
Confidence 599999999999999999876443
No 478
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.07 E-value=0.13 Score=44.37 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..|++.|..|+||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 479
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.04 E-value=0.12 Score=51.46 Aligned_cols=23 Identities=22% Similarity=0.580 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++|+|+.|+|||||++.|.|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999854
No 480
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=90.95 E-value=0.13 Score=46.54 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..+.+.|++|+|||+|+.++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 36999999999999999998764
No 481
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.95 E-value=0.098 Score=47.91 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 017937 117 YVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~ 137 (363)
.+.+.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999876
No 482
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.94 E-value=0.091 Score=47.11 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=17.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999865
No 483
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.93 E-value=0.81 Score=43.57 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+.+.|.|+||+|||+|+..+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999999998764
No 484
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.86 E-value=0.12 Score=47.72 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~ 138 (363)
.++|.|++|+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998764
No 485
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.74 E-value=0.13 Score=47.25 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 017937 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
...++|.|++|+|||||++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998764
No 486
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.60 E-value=0.13 Score=50.98 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQKL 140 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~~ 140 (363)
.++|+|+.|+|||||++.|.|-..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 589999999999999999998643
No 487
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.49 E-value=0.16 Score=42.74 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 017937 116 GYVAVLGKPNVGKSTLANQMI 136 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~ 136 (363)
...+|+|+.|+||||++.++.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 478999999999999999874
No 488
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.44 E-value=0.17 Score=43.79 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+...|+|.|.+|+||||+++.|..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 455899999999999999999864
No 489
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.42 E-value=0.18 Score=45.45 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
..|+|+|++|||||+|...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4689999999999999999864
No 490
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.42 E-value=0.14 Score=43.94 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
..++++|++|+|||||+..+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999887764
No 491
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.38 E-value=0.18 Score=42.98 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+...|+|.|.+|+||||+++.|..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 455799999999999999998853
No 492
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.36 E-value=0.11 Score=45.57 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhcc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
+...|+|.|.+|+||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3458999999999999999988653
No 493
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.34 E-value=0.19 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~~ 138 (363)
..|+|+|++|+|||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
No 494
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.34 E-value=0.023 Score=49.06 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 017937 117 YVAVLGKPNVGKSTLANQMIGQK 139 (363)
Q Consensus 117 ~i~i~G~~~~GKSSLln~l~~~~ 139 (363)
.++|+|++|+|||||++++.+--
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 57899999999999999998753
No 495
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.30 E-value=0.15 Score=43.87 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=17.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+...|+|.|.+|+||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 455899999999999999998864
No 496
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.29 E-value=0.19 Score=43.11 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhc
Q 017937 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l~~ 137 (363)
+...|++.|.+|+||||+++.|..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 555899999999999999998764
No 497
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.28 E-value=0.46 Score=41.54 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=42.5
Q ss_pred CeeEEEEeCCCCchhhhhhHHHHHHHHHHhhccccceEEEEeeCCCCCchHHHHHHHhccccCCCCCEEEEEcCCCC
Q 017937 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (363)
Q Consensus 162 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ad~ii~VvD~~~~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl 238 (363)
.+.+.++|||+..... ....+..||.+|+++............+.+.++....+.++.+|+|+++.
T Consensus 144 ~yD~viiD~pp~~~~~-----------~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDVT-----------LKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp TCSEEEEEECSSCSHH-----------HHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CCCEEEEECcCCccHH-----------HHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 4679999999843211 22335679999999988654322233444455544346788899999953
No 498
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.23 E-value=0.15 Score=43.10 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 017937 116 GYVAVLGKPNVGKSTLANQMIG 137 (363)
Q Consensus 116 ~~i~i~G~~~~GKSSLln~l~~ 137 (363)
..|+++|.+|+||||+...|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988754
No 499
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=90.13 E-value=0.18 Score=46.70 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHH
Q 017937 114 KSGYVAVLGKPNVGKSTLANQM 135 (363)
Q Consensus 114 ~~~~i~i~G~~~~GKSSLln~l 135 (363)
+..+|+++|.+++|||||+..+
T Consensus 32 ~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHH
Confidence 4559999999999999999886
No 500
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.11 E-value=0.39 Score=41.17 Aligned_cols=22 Identities=14% Similarity=0.027 Sum_probs=17.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHh
Q 017937 115 SGYVAVLGKPNVGKSTLANQMI 136 (363)
Q Consensus 115 ~~~i~i~G~~~~GKSSLln~l~ 136 (363)
...+.+.|++|+||||++-.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~ 33 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRL 33 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHH
Confidence 3468888999999999876654
Done!