Query 017938
Match_columns 363
No_of_seqs 332 out of 1536
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:45:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1141 Predicted histone meth 100.0 1.2E-49 2.6E-54 404.7 5.8 189 14-241 615-836 (1262)
2 KOG1082 Histone H3 (Lys9) meth 100.0 1.1E-47 2.4E-52 379.5 16.5 280 55-363 50-358 (364)
3 KOG4442 Clathrin coat binding 100.0 2.3E-45 5E-50 371.8 14.6 194 150-361 67-262 (729)
4 KOG1080 Histone H3 (Lys4) meth 100.0 2.4E-30 5.3E-35 277.3 11.2 140 204-359 866-1005(1005)
5 KOG1079 Transcriptional repres 100.0 8E-30 1.7E-34 257.6 9.6 177 133-338 522-711 (739)
6 smart00317 SET SET (Su(var)3-9 99.9 1.4E-23 3E-28 172.3 13.7 116 205-335 1-116 (116)
7 KOG1083 Putative transcription 99.8 1.6E-22 3.4E-27 212.1 1.0 130 193-339 1166-1297(1306)
8 KOG1085 Predicted methyltransf 99.8 6E-21 1.3E-25 177.0 9.1 128 199-338 251-379 (392)
9 COG2940 Proteins containing SE 99.7 6.1E-18 1.3E-22 173.4 2.5 160 185-359 313-480 (480)
10 PF05033 Pre-SET: Pre-SET moti 99.7 1.1E-16 2.3E-21 130.9 6.9 100 69-196 1-103 (103)
11 smart00468 PreSET N-terminal t 99.6 1.3E-15 2.8E-20 123.6 7.0 39 67-105 1-40 (98)
12 PF00856 SET: SET domain; Int 99.5 1.6E-13 3.4E-18 117.4 10.0 54 280-336 109-162 (162)
13 KOG1141 Predicted histone meth 99.0 4.5E-10 9.8E-15 116.8 7.0 302 19-358 823-1261(1262)
14 KOG1081 Transcription factor N 99.0 2.3E-10 5E-15 116.5 2.4 150 179-360 288-438 (463)
15 KOG2589 Histone tail methylase 98.9 1.9E-09 4.2E-14 103.8 5.4 117 213-351 136-252 (453)
16 KOG2461 Transcription factor B 98.4 1.8E-07 4E-12 93.4 4.8 117 202-339 26-146 (396)
17 cd01395 HMT_MBD Methyl-CpG bin 97.3 5.9E-05 1.3E-09 55.4 -0.2 30 14-43 20-49 (60)
18 smart00508 PostSET Cysteine-ri 96.9 0.00055 1.2E-08 41.7 1.6 17 344-360 2-18 (26)
19 smart00570 AWS associated with 96.8 0.00072 1.6E-08 48.1 1.6 29 169-201 21-49 (51)
20 KOG2084 Predicted histone tail 90.9 0.41 8.8E-06 48.4 5.7 41 292-339 208-249 (482)
21 smart00391 MBD Methyl-CpG bind 90.9 0.056 1.2E-06 41.9 -0.5 31 14-44 24-54 (77)
22 cd01397 HAT_MBD Methyl-CpG bin 88.7 0.14 3.1E-06 39.2 0.2 30 14-43 21-50 (73)
23 cd00122 MBD MeCP2, MBD1, MBD2, 88.4 0.12 2.6E-06 38.2 -0.3 29 15-43 22-50 (62)
24 PF01429 MBD: Methyl-CpG bindi 82.5 0.29 6.3E-06 37.7 -0.8 31 15-45 28-58 (77)
25 KOG1337 N-methyltransferase [G 82.1 1.1 2.3E-05 46.3 2.9 41 292-338 239-279 (472)
26 PF03638 TCR: Tesmin/TSO1-like 74.7 1.3 2.9E-05 30.2 0.7 37 149-197 4-40 (42)
27 PF12937 F-box-like: F-box-lik 72.3 2.9 6.3E-05 28.4 2.0 33 29-61 5-37 (47)
28 PF00646 F-box: F-box domain; 63.9 4.7 0.0001 27.3 1.6 35 28-62 6-40 (48)
29 PF08666 SAF: SAF domain; Int 63.1 4.7 0.0001 29.0 1.6 15 318-332 3-17 (63)
30 smart00256 FBOX A Receptor for 55.4 12 0.00026 23.9 2.4 31 31-61 4-34 (41)
31 cd01396 MeCP2_MBD MeCP2, MBD1, 49.1 4.3 9.4E-05 31.3 -0.7 29 15-43 23-51 (77)
32 KOG1081 Transcription factor N 45.6 7.2 0.00016 40.3 0.1 137 211-362 120-267 (463)
33 smart00858 SAF This domain fam 36.1 24 0.00052 25.1 1.6 16 318-333 3-18 (64)
34 PF11403 Yeast_MT: Yeast metal 34.6 35 0.00076 22.1 2.0 9 149-157 22-30 (40)
35 KOG2155 Tubulin-tyrosine ligas 29.7 30 0.00064 35.5 1.6 47 290-337 205-251 (631)
36 smart00317 SET SET (Su(var)3-9 25.4 79 0.0017 24.6 3.1 16 216-231 98-113 (116)
37 PF01847 VHL: von Hippel-Linda 21.7 1E+02 0.0023 27.1 3.3 37 290-334 17-53 (156)
38 TIGR03569 NeuB_NnaB N-acetylne 21.0 52 0.0011 32.5 1.5 20 316-335 277-296 (329)
39 cd05468 pVHL von Hippel-Landau 20.1 1.4E+02 0.003 25.6 3.8 37 290-334 11-47 (141)
No 1
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-49 Score=404.68 Aligned_cols=189 Identities=22% Similarity=0.324 Sum_probs=156.4
Q ss_pred ccceeeeeeccchhhHHHHHHHHhcCCCchhhhhHHhh-------hhhhhhhcccccccccccccCCcCCCCeeeEeCCC
Q 017938 14 HKRTIEVDEEQKQNQFLQWARLILPWLTPGELANVSLT-------CRTLSQISKSITLSRSLDASRSVENFPIPFHNAAD 86 (363)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~DiS~G~E~~pI~~~N~vd 86 (363)
|++.|||.|+||||++|+.+++|..||.++++.++... ....++..+.....++.||+.|.|.+||+++|++|
T Consensus 615 ~~~~fhv~yktpcg~~lr~~~el~ryL~et~c~flf~~~f~~~~yV~~~r~~~p~kp~~~~~Di~~g~e~vpis~~neid 694 (1262)
T KOG1141|consen 615 YIRDFHVEYKTPCGMPLRMRIELYRYLVETRCKFLFVIGFDRAFYVVRHRAPNPLKPGNRCTDIPCGREHVPISEKNEID 694 (1262)
T ss_pred hhhcceeeccCCCccchHHHHHHHHHHHHhcCcEEEEeecccchheeecccCCCcCCcceeccccCCccccccceeeccc
Confidence 78999999999999999999999999999998887655 23334556666788899999999999999999999
Q ss_pred CCCCCCeEEcccCCCCCCCCCCCCCCCccccccccccccccccccccCCccccccccCCCCCCCCccCCCcCCCCCCCcc
Q 017938 87 KTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDESESGCDCEECFEVGLGDGVF 166 (363)
Q Consensus 87 ~~~~~~f~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~C~C~~~~~~~~~~~~~ 166 (363)
..++|.|.|....+.... ...+ +++++ ..+|+|..+|.+. .
T Consensus 695 s~~lpq~ay~K~~ip~~~------------nl~n--~~~~f--------------------l~scdc~~gcid~-----~ 735 (1262)
T KOG1141|consen 695 SHRLPQAAYKKHMIPTNN------------NLSN--RRKDF--------------------LQSCDCPTGCIDS-----M 735 (1262)
T ss_pred CcCCccchhheeeccCCC------------cccc--cChhh--------------------hhcCCCCcchhhh-----h
Confidence 999999999987652211 1011 12222 2679999999777 7
Q ss_pred CCCCCCC------------------------C-CccceeeecCCCCCCCC-CCCCccccCCCcccEEEEEeCCCCcceee
Q 017938 167 GCPCFSG------------------------L-EDVGIVSECGPSCGCGS-ECGNRLTQRGISVRLKIVRSVNKGWGLYA 220 (363)
Q Consensus 167 ~c~C~~~------------------------~-~~~~~i~EC~~~C~C~~-~C~Nrv~q~g~~~~leV~~t~~kGwGlrA 220 (363)
.|+|.++ . ..+..+|||+..|+|.+ .|.||++|+|.++||++|++..||||+|.
T Consensus 736 kcachQltvk~~~t~p~~~v~~t~gykyKRl~e~~ptg~yEc~k~ckc~~~~C~nrmvqhg~qvRlq~fkt~~kGWg~rc 815 (1262)
T KOG1141|consen 736 KCACHQLTVKKKTTGPNQNVASTNGYKYKRLIEIRPTGPYECLKACKCCGPDCLNRMVQHGYQVRLQRFKTIHKGWGRRC 815 (1262)
T ss_pred hhhHHHHHHHhhccCCCcccccCcchhhHHHHHhcCCCHHHHHHhhccCcHHHHHHHhhcCceeEeeeccccccccceEe
Confidence 8988854 0 11346899999999875 89999999999999999999999999999
Q ss_pred cccccCCcEEEEeeeEEeeHH
Q 017938 221 DQFIKQGQFICEYAGELLTTK 241 (363)
Q Consensus 221 ~~~I~~G~fI~eY~Gevi~~~ 241 (363)
.++|.+|.|||.|.|.++++.
T Consensus 816 lddi~~g~fVciy~g~~l~~~ 836 (1262)
T KOG1141|consen 816 LDDITGGNFVCIYPGGALLHQ 836 (1262)
T ss_pred eeecCCceEEEEecchhhhhh
Confidence 999999999999999987654
No 2
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.1e-47 Score=379.53 Aligned_cols=280 Identities=33% Similarity=0.500 Sum_probs=197.4
Q ss_pred hhhhcccccccccccccCCcCCCCeeeEeCCCCCCCCCeEEcccCCCCCCCCCCCCCCCccccccccccccccccccccC
Q 017938 55 LSQISKSITLSRSLDASRSVENFPIPFHNAADKTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLG 134 (363)
Q Consensus 55 ~~~~~~~~~~~~~~DiS~G~E~~pI~~~N~vd~~~~~~f~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (363)
.....+..+.....||+.|.|++||+++|+||.+.+++|.|++..+++..... .+ .
T Consensus 50 ~~~~~~~~~~~~~~d~~~~~e~~~v~~~n~id~~~~~~f~y~~~~~~~~~~~~-----~~-----------~-------- 105 (364)
T KOG1082|consen 50 ANDKDKLEAKSELEDIALGSENLPVPLVNRIDEDAPLYFQYIATEIVDPGELS-----DC-----------E-------- 105 (364)
T ss_pred cccccccccccccccccCccccCceeeeeeccCCccccceeccccccCccccc-----cC-----------c--------
Confidence 33344555566789999999999999999999876589999998876553110 00 0
Q ss_pred CccccccccCCCCCC---CCccCCCcCCCCCCCccCCCCC---CCCCccceeeecCCCCCCCCCCCCccccCCCcccEEE
Q 017938 135 FDSVSLVCESDESES---GCDCEECFEVGLGDGVFGCPCF---SGLEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKI 208 (363)
Q Consensus 135 ~~~~~~~C~~~~~~~---~C~C~~~~~~~~~~~~~~c~C~---~~~~~~~~i~EC~~~C~C~~~C~Nrv~q~g~~~~leV 208 (363)
....|.|...+... .|.|..... +...+..+. .....+..+|||++.|+|++.|.|||+|+|++.+|+|
T Consensus 106 -~~~~c~C~~~~~~~~~~~C~C~~~n~----~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~nRv~q~g~~~~leI 180 (364)
T KOG1082|consen 106 -NSTGCRCCSSCSSVLPLTCLCERHNG----GLVAYTCDGDCGTLGKFKEPVFECSVACGCHPDCANRVVQKGLQFHLEV 180 (364)
T ss_pred -cccCCCccCCCCCCCCccccChHhhC----CccccccCCccccccccCccccccccCCCCCCcCcchhhccccccceEE
Confidence 00112232222111 256655331 111221111 2233456899999999999999999999999999999
Q ss_pred EEeCCCCcceeecccccCCcEEEEeeeEEeeHHHHHHHHHhhhcccCCCCCC-cceeeeeccCC----------CCCcce
Q 017938 209 VRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSPRNS-SALLVIREHLP----------SGKACL 277 (363)
Q Consensus 209 ~~t~~kGwGlrA~~~I~~G~fI~eY~Gevi~~~e~~~r~~~y~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~ 277 (363)
|+++.+|||||+++.|++|+||+||+||+++..+++.+...++.+....... ..........+ ......
T Consensus 181 frt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (364)
T KOG1082|consen 181 FRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLREYLDDDCDAYSIADREWVDESPVGNTFVAPSLPGGPGR 260 (364)
T ss_pred EecCCceeeecccccccCCCeeEEEeeEecChHHhhhccccccccccccccchhhhccccccccccccccccccccCCCc
Confidence 9999999999999999999999999999999999998854433321111100 00000000000 011123
Q ss_pred eEEEeccccCCcccccccCCCCCce-eEEEEEeCCCcccEEEEEEcCCCCCCCeEEEecCCCCC-----------CCCCc
Q 017938 278 RMNIDATRIGNIARFINHSCDGGNL-STTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRA-----------RPRGL 345 (363)
Q Consensus 278 ~~~IDa~~~GN~aRFINHSC~PNn~-~~v~~~~~~~~~p~i~~fA~rdI~~GEELT~dYg~~~~-----------~~~~~ 345 (363)
.+.|||+..||++|||||||.||.. +.|+.+..+..++|++|||+++|+||||||||||.... ...+.
T Consensus 261 ~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~~~~~~~~~~~~~~~~~ 340 (364)
T KOG1082|consen 261 ELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAYKLLVQDGANIYTPVMKK 340 (364)
T ss_pred ceEEchhhcccccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhcccccccccccccccccccch
Confidence 6899999999999999999999654 55666656677899999999999999999999996621 34677
Q ss_pred eeeeCCCCCceecCCCCC
Q 017938 346 PCYCGSTSCFGILPSENT 363 (363)
Q Consensus 346 ~C~CGs~~Crg~l~~~~~ 363 (363)
.|.||+.+||+.+....+
T Consensus 341 ~c~c~~~~cr~~~~~~~~ 358 (364)
T KOG1082|consen 341 NCNCGLEKCRGLLGSAPC 358 (364)
T ss_pred hhcCCCHHhCcccCCCcc
Confidence 899999999999987653
No 3
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-45 Score=371.80 Aligned_cols=194 Identities=35% Similarity=0.582 Sum_probs=163.5
Q ss_pred CCccCCCcCCCCCCCccCCCCCCCCCccceeeecCC-CCC-CCCCCCCccccCCCcccEEEEEeCCCCcceeecccccCC
Q 017938 150 GCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGP-SCG-CGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQG 227 (363)
Q Consensus 150 ~C~C~~~~~~~~~~~~~~c~C~~~~~~~~~i~EC~~-~C~-C~~~C~Nrv~q~g~~~~leV~~t~~kGwGlrA~~~I~~G 227 (363)
-|+|...-.++ -...|.|...--.+....||++ .|. |+..|.|+.+|+....+++||+|++|||||||.++|++|
T Consensus 67 ~Cdc~~~~~d~---~n~~~~cg~~CiNr~t~iECs~~~C~~cg~~C~NQRFQkkqyA~vevF~Te~KG~GLRA~~dI~~g 143 (729)
T KOG4442|consen 67 ICDCKPKTGDG---ANGACACGEDCINRMTSIECSDRECPRCGVYCKNQRFQKKQYAKVEVFLTEKKGCGLRAEEDIPKG 143 (729)
T ss_pred eeecccccccc---cccccccCccccchhhhcccCCccCCCccccccchhhhhhccCceeEEEecCcccceeeccccCCC
Confidence 37776544222 0123444332122356789999 798 999999999999999999999999999999999999999
Q ss_pred cEEEEeeeEEeeHHHHHHHHHhhhcccCCCCCCcceeeeeccCCCCCcceeEEEeccccCCcccccccCCCCCceeEEEE
Q 017938 228 QFICEYAGELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLV 307 (363)
Q Consensus 228 ~fI~eY~Gevi~~~e~~~r~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IDa~~~GN~aRFINHSC~PNn~~~v~~ 307 (363)
+||+||.||||+..|.++|...|+. .+..+.|++.+.. ..+|||+.+||.||||||||+| |+....|
T Consensus 144 ~FI~EY~GEVI~~~Ef~kR~~~Y~~---d~~kh~Yfm~L~~---------~e~IDAT~KGnlaRFiNHSC~P-Na~~~KW 210 (729)
T KOG4442|consen 144 QFILEYIGEVIEEKEFEKRVKRYAK---DGIKHYYFMALQG---------GEYIDATKKGNLARFINHSCDP-NAEVQKW 210 (729)
T ss_pred cEEeeeccccccHHHHHHHHHHHHh---cCCceEEEEEecC---------CceecccccCcHHHhhcCCCCC-Cceeeee
Confidence 9999999999999999999999997 3445556666554 2689999999999999999999 6766667
Q ss_pred EeCCCcccEEEEEEcCCCCCCCeEEEecCCCCCCCCCceeeeCCCCCceecCCC
Q 017938 308 RSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCFGILPSE 361 (363)
Q Consensus 308 ~~~~~~~p~i~~fA~rdI~~GEELT~dYg~~~~~~~~~~C~CGs~~Crg~l~~~ 361 (363)
.+.|. .||+|||.|.|++||||||||++.++.....+|+||+++|||||++.
T Consensus 211 tV~~~--lRvGiFakk~I~~GEEITFDYqf~rYGr~AQ~CyCgeanC~G~IGgk 262 (729)
T KOG4442|consen 211 TVPDE--LRVGIFAKKVIKPGEEITFDYQFDRYGRDAQPCYCGEANCRGWIGGK 262 (729)
T ss_pred eeCCe--eEEEEeEecccCCCceeeEecccccccccccccccCCcccccccCCC
Confidence 77775 49999999999999999999999998889999999999999999986
No 4
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=2.4e-30 Score=277.34 Aligned_cols=140 Identities=37% Similarity=0.674 Sum_probs=122.6
Q ss_pred ccEEEEEeCCCCcceeecccccCCcEEEEeeeEEeeHHHHHHHHHhhhcccCCCCCCcceeeeeccCCCCCcceeEEEec
Q 017938 204 VRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDA 283 (363)
Q Consensus 204 ~~leV~~t~~kGwGlrA~~~I~~G~fI~eY~Gevi~~~e~~~r~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IDa 283 (363)
..|...++..+||||||.+.|.+|++|+||+||++...-++.|+..|.. .+...+|+|.+++. ++|||
T Consensus 866 k~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~---~gi~~sYlfrid~~---------~ViDA 933 (1005)
T KOG1080|consen 866 KYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYER---MGIGDSYLFRIDDE---------VVVDA 933 (1005)
T ss_pred hhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhc---cCcccceeeecccc---------eEEec
Confidence 3467778999999999999999999999999999999999999988886 34467888888753 79999
Q ss_pred cccCCcccccccCCCCCceeEEEEEeCCCcccEEEEEEcCCCCCCCeEEEecCCCCCCCCCceeeeCCCCCceecC
Q 017938 284 TRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCFGILP 359 (363)
Q Consensus 284 ~~~GN~aRFINHSC~PNn~~~v~~~~~~~~~p~i~~fA~rdI~~GEELT~dYg~~~~~~~~~~C~CGs~~Crg~l~ 359 (363)
++.||+||||||||+| ||...++.++|.. +|++||.|||.+||||||||.+..-. .+.+|+||+++|||+|.
T Consensus 934 tk~gniAr~InHsC~P-NCyakvi~V~g~~--~IvIyakr~I~~~EElTYDYkF~~e~-~kipClCgap~Crg~~n 1005 (1005)
T KOG1080|consen 934 TKKGNIARFINHSCNP-NCYAKVITVEGDK--RIVIYSKRDIAAGEELTYDYKFPTED-DKIPCLCGAPNCRGFLN 1005 (1005)
T ss_pred cccCchhheeecccCC-CceeeEEEecCee--EEEEEEecccccCceeeeeccccccc-cccccccCCCccccccC
Confidence 9999999999999999 6766667777764 99999999999999999999976332 38899999999999973
No 5
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.96 E-value=8e-30 Score=257.63 Aligned_cols=177 Identities=36% Similarity=0.633 Sum_probs=144.8
Q ss_pred cCCccccccccCCC--CCCCCccCCCcCCCCCCCccCCCCCCCCCccceeeecCCC-CCC-C---------CCCCCcccc
Q 017938 133 LGFDSVSLVCESDE--SESGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPS-CGC-G---------SECGNRLTQ 199 (363)
Q Consensus 133 ~~~~~~~~~C~~~~--~~~~C~C~~~~~~~~~~~~~~c~C~~~~~~~~~i~EC~~~-C~C-~---------~~C~Nrv~q 199 (363)
..++..+|.|..+| ...||.|..-|. . ..|+|+. ...||.|. |.+ + -+|.|--+|
T Consensus 522 ~~~CEk~C~C~~dC~nrF~GC~Ck~QC~-t-----kqCpC~~------A~rECdPd~Cl~cg~~~~~d~~~~~C~N~~l~ 589 (739)
T KOG1079|consen 522 ETFCEKFCYCSPDCRNRFPGCRCKAQCN-T-----KQCPCYL------AVRECDPDVCLMCGNVDHFDSSKISCKNTNLQ 589 (739)
T ss_pred CcchhhcccCCHHHHhcCCCCCcccccc-c-----CcCchhh------hccccCchHHhccCcccccccCccccccchhh
Confidence 44566677775333 458999966551 2 4699976 46799976 744 3 289999999
Q ss_pred CCCcccEEEEEeCCCCcceeecccccCCcEEEEeeeEEeeHHHHHHHHHhhhcccCCCCCCcceeeeeccCCCCCcceeE
Q 017938 200 RGISVRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRM 279 (363)
Q Consensus 200 ~g~~~~leV~~t~~kGwGlrA~~~I~~G~fI~eY~Gevi~~~e~~~r~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (363)
+|.+.++.|..+...|||||+++.+.|++||.||+||+|+++||++|..+||.. .-+|+|.+.. +|
T Consensus 590 ~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~-----~cSflFnln~---------dy 655 (739)
T KOG1079|consen 590 RGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRY-----MCSFLFNLNN---------DY 655 (739)
T ss_pred hhhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhcccccccc-----cceeeeeccc---------cc
Confidence 999999999999999999999999999999999999999999999999999972 3445555543 37
Q ss_pred EEeccccCCcccccccCCCCCceeEEEEEeCCCcccEEEEEEcCCCCCCCeEEEecCCC
Q 017938 280 NIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEI 338 (363)
Q Consensus 280 ~IDa~~~GN~aRFINHSC~PNn~~~v~~~~~~~~~p~i~~fA~rdI~~GEELT~dYg~~ 338 (363)
+|||+++||.+||+|||-.||+...|+ .+.|. .||.|||+|.|.+||||||||+++
T Consensus 656 viDs~rkGnk~rFANHS~nPNCYAkvm-~V~Gd--hRIGifAkRaIeagEELffDYrYs 711 (739)
T KOG1079|consen 656 VIDSTRKGNKIRFANHSFNPNCYAKVM-MVAGD--HRIGIFAKRAIEAGEELFFDYRYS 711 (739)
T ss_pred eEeeeeecchhhhccCCCCCCcEEEEE-EecCC--cceeeeehhhcccCceeeeeeccC
Confidence 999999999999999999995444444 45554 499999999999999999999987
No 6
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.91 E-value=1.4e-23 Score=172.26 Aligned_cols=116 Identities=46% Similarity=0.772 Sum_probs=93.0
Q ss_pred cEEEEEeCCCCcceeecccccCCcEEEEeeeEEeeHHHHHHHHHhhhcccCCCCCCcceeeeeccCCCCCcceeEEEecc
Q 017938 205 RLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDAT 284 (363)
Q Consensus 205 ~leV~~t~~kGwGlrA~~~I~~G~fI~eY~Gevi~~~e~~~r~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IDa~ 284 (363)
++++++++++|+||+|+++|++|++|.+|.|.++...+...+...+.... ....+++.... .++||++
T Consensus 1 ~~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------~~~id~~ 68 (116)
T smart00317 1 KLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDG---ADSFYLFEIDS---------DLCIDAR 68 (116)
T ss_pred CcEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcC---CCCEEEEECCC---------CEEEeCC
Confidence 36788889999999999999999999999999999988877765444321 11233333221 3689999
Q ss_pred ccCCcccccccCCCCCceeEEEEEeCCCcccEEEEEEcCCCCCCCeEEEec
Q 017938 285 RIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSY 335 (363)
Q Consensus 285 ~~GN~aRFINHSC~PNn~~~v~~~~~~~~~p~i~~fA~rdI~~GEELT~dY 335 (363)
..||++|||||||.| |++...+..++. .++.++|+|||++|||||+||
T Consensus 69 ~~~~~~~~iNHsc~p-N~~~~~~~~~~~--~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 69 RKGNIARFINHSCEP-NCELLFVEVNGD--SRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred ccCcHHHeeCCCCCC-CEEEEEEEECCC--cEEEEEECCCcCCCCEEeecC
Confidence 999999999999999 676666665554 389999999999999999999
No 7
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.85 E-value=1.6e-22 Score=212.07 Aligned_cols=130 Identities=39% Similarity=0.641 Sum_probs=107.5
Q ss_pred CCCccccC-CCcccEEEEEeCCCCcceeecccccCCcEEEEeeeEEeeHHHHHHHH-HhhhcccCCCCCCcceeeeeccC
Q 017938 193 CGNRLTQR-GISVRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQ-QIYDGLASSPRNSSALLVIREHL 270 (363)
Q Consensus 193 C~Nrv~q~-g~~~~leV~~t~~kGwGlrA~~~I~~G~fI~eY~Gevi~~~e~~~r~-~~y~~~~~~~~~~~~~~~~~~~~ 270 (363)
|.|+.+|+ +.-.+|+||+.+.+||||++.++|++|+||+||+|||++.++.+.+. ..|.. ....|.+.+..
T Consensus 1166 c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~~-----d~~~~cL~I~p-- 1238 (1306)
T KOG1083|consen 1166 CSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYHN-----DDDHYCLVIDP-- 1238 (1306)
T ss_pred hhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccccccCCC-----CCcccccccCc--
Confidence 77877765 56788999999999999999999999999999999999988877661 22221 22234443332
Q ss_pred CCCCcceeEEEeccccCCcccccccCCCCCceeEEEEEeCCCcccEEEEEEcCCCCCCCeEEEecCCCC
Q 017938 271 PSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIR 339 (363)
Q Consensus 271 ~~~~~~~~~~IDa~~~GN~aRFINHSC~PNn~~~v~~~~~~~~~p~i~~fA~rdI~~GEELT~dYg~~~ 339 (363)
..+||+.++||.+|||||||.| |+..+.|.++|. .||.+||+|||.+||||||||+...
T Consensus 1239 -------~l~id~~R~~n~~RfinhscKP-Nc~~qkwSVNG~--~Rv~L~A~rDi~kGEELtYDYN~ks 1297 (1306)
T KOG1083|consen 1239 -------GLFIDIPRMGNGARFINHSCKP-NCEMQKWSVNGE--YRVGLFALRDLPKGEELTYDYNFKS 1297 (1306)
T ss_pred -------cccCChhhccccccccccccCC-CCccccccccce--eeeeeeecCCCCCCceEEEeccccc
Confidence 3689999999999999999999 788888888886 6999999999999999999998753
No 8
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.84 E-value=6e-21 Score=176.95 Aligned_cols=128 Identities=35% Similarity=0.550 Sum_probs=107.0
Q ss_pred cCCCcccEEEEEeCCCCcceeecccccCCcEEEEeeeEEeeHHHHHHHHHhhhcccCCCCCCcceeeeeccCCCCCccee
Q 017938 199 QRGISVRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLR 278 (363)
Q Consensus 199 q~g~~~~leV~~t~~kGwGlrA~~~I~~G~fI~eY~Gevi~~~e~~~r~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (363)
.+|....|.+..-.+||.||+|+..+++|+||.||.|.+|.-.|+..|+..|... .....|+..+. |.. -.
T Consensus 251 l~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~D---e~~GcYMYyF~-h~s-----k~ 321 (392)
T KOG1085|consen 251 LKGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYAND---EEIGCYMYYFE-HNS-----KK 321 (392)
T ss_pred HhccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccC---cccceEEEeee-ccC-----ee
Confidence 3566677888888889999999999999999999999999999999999998763 33334443333 321 25
Q ss_pred EEEecccc-CCcccccccCCCCCceeEEEEEeCCCcccEEEEEEcCCCCCCCeEEEecCCC
Q 017938 279 MNIDATRI-GNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEI 338 (363)
Q Consensus 279 ~~IDa~~~-GN~aRFINHSC~PNn~~~v~~~~~~~~~p~i~~fA~rdI~~GEELT~dYg~~ 338 (363)
|+|||++. +-++|.||||=.+ |+++.++++.|. ||+.+.|.|||.+||||+||||+.
T Consensus 322 yCiDAT~et~~lGRLINHS~~g-Nl~TKvv~Idg~--pHLiLvA~rdIa~GEELlYDYGDR 379 (392)
T KOG1085|consen 322 YCIDATKETPWLGRLINHSVRG-NLKTKVVEIDGS--PHLILVARRDIAQGEELLYDYGDR 379 (392)
T ss_pred eeeecccccccchhhhcccccC-cceeeEEEecCC--ceEEEEeccccccchhhhhhcccc
Confidence 89999985 4579999999998 899999988876 899999999999999999999986
No 9
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.69 E-value=6.1e-18 Score=173.37 Aligned_cols=160 Identities=31% Similarity=0.536 Sum_probs=123.0
Q ss_pred CCCCCCCCCCCccccCCCcccEEEEEeCCCCcceeecccccCCcEEEEeeeEEeeHHHHHHHHHhhhcccCCCCCCccee
Q 017938 185 PSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSPRNSSALL 264 (363)
Q Consensus 185 ~~C~C~~~C~Nrv~q~g~~~~leV~~t~~kGwGlrA~~~I~~G~fI~eY~Gevi~~~e~~~r~~~y~~~~~~~~~~~~~~ 264 (363)
........+.|...+........+..+..+|||+||.+.|++|++|.+|.|+++...++..+...++.+.. ...+.
T Consensus 313 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 388 (480)
T COG2940 313 SNVSKLKELLNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGN----EFSFG 388 (480)
T ss_pred ccCccccchhhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhcccccccc----ccchh
Confidence 33333445666666667777788888999999999999999999999999999999998888776643221 11111
Q ss_pred eeeccCCCCCcceeEEEeccccCCcccccccCCCCCceeEEEEEeCCCcccEEEEEEcCCCCCCCeEEEecCCCCCC---
Q 017938 265 VIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRAR--- 341 (363)
Q Consensus 265 ~~~~~~~~~~~~~~~~IDa~~~GN~aRFINHSC~PNn~~~v~~~~~~~~~p~i~~fA~rdI~~GEELT~dYg~~~~~--- 341 (363)
.+..+ ..++|+...|+++|||||||.| |+..+.....| ..++.++|+|||.+||||++||+.....
T Consensus 389 ~~~~~--------~~~~d~~~~g~~~r~~nHS~~p-N~~~~~~~~~g--~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~ 457 (480)
T COG2940 389 LLEDK--------DKVRDSQKAGDVARFINHSCTP-NCEASPIEVNG--IFKISIYAIRDIKAGEELTYDYGPSLEDNRE 457 (480)
T ss_pred hcccc--------chhhhhhhcccccceeecCCCC-Ccceecccccc--cceeeecccccchhhhhhccccccccccchh
Confidence 12211 3579999999999999999999 67666555555 4599999999999999999999976332
Q ss_pred -----CCCceeeeCCCCCceecC
Q 017938 342 -----PRGLPCYCGSTSCFGILP 359 (363)
Q Consensus 342 -----~~~~~C~CGs~~Crg~l~ 359 (363)
.....|.||+..|++++.
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~ 480 (480)
T COG2940 458 LKKLLEKRWGCACGEDRCSHTMS 480 (480)
T ss_pred hhhhhhhhhccccCCCccCCCCC
Confidence 245789999999999873
No 10
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=99.67 E-value=1.1e-16 Score=130.89 Aligned_cols=100 Identities=31% Similarity=0.498 Sum_probs=53.5
Q ss_pred cccCCcCCCCeeeEeCCCCCCC-CCeEEcccCCCCCCCCCCCCCCCccccccccccccccccccccCCccccccccCCC-
Q 017938 69 DASRSVENFPIPFHNAADKTPY-AYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDE- 146 (363)
Q Consensus 69 DiS~G~E~~pI~~~N~vd~~~~-~~f~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~- 146 (363)
|||+|+|++||+++|+||++++ +.|+|+++++++++... ++.... ..|.|...|
T Consensus 1 Dis~g~e~~pI~~~N~vd~~~~p~~F~Yi~~~~~~~~~~~-~~~~~~-----------------------~~C~C~~~C~ 56 (103)
T PF05033_consen 1 DISRGKENVPIPVVNDVDDEPPPPNFEYIPENIYGEGVPD-IDPEFL-----------------------QGCDCSGDCS 56 (103)
T ss_dssp -TTCTSSSS-EEEEESSSS--SSTSSEE-SS-EESTTSS--TBGGGT-----------------------S----SSSST
T ss_pred CCCCCccCCCEEEEeCCCCCCCCCCeEEeeeEEcCCCccc-cccccC-----------------------ccCccCCCCC
Confidence 8999999999999999999877 68999999987765431 111111 123443333
Q ss_pred CCCCCccCCCcCCCCCCCccCCCCCCC-CCccceeeecCCCCCCCCCCCCc
Q 017938 147 SESGCDCEECFEVGLGDGVFGCPCFSG-LEDVGIVSECGPSCGCGSECGNR 196 (363)
Q Consensus 147 ~~~~C~C~~~~~~~~~~~~~~c~C~~~-~~~~~~i~EC~~~C~C~~~C~Nr 196 (363)
....|.|...... ...|..=..+ .....+||||++.|+|+..|.||
T Consensus 57 ~~~~C~C~~~~~~----~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 57 NPSNCECLQRNGG----IFAYDSNGRLRIPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp CTTTSHHHCCTSS----S-SB-TTSSBSSSSTSEEE---TTSSS-TTSTT-
T ss_pred CCCCCcCccccCc----cccccCCCcCccCCCCeEEeCCCCCCCCCCCCCC
Confidence 3455666543311 1122221111 13567899999999999999998
No 11
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=99.61 E-value=1.3e-15 Score=123.61 Aligned_cols=39 Identities=33% Similarity=0.489 Sum_probs=34.3
Q ss_pred cccccCCcCCCCeeeEeCCCCCCC-CCeEEcccCCCCCCC
Q 017938 67 SLDASRSVENFPIPFHNAADKTPY-AYFIYTPSQIIPPPC 105 (363)
Q Consensus 67 ~~DiS~G~E~~pI~~~N~vd~~~~-~~f~Y~~~~~~~~~~ 105 (363)
..|||+|+|++||++||+||++++ +.|+|+++++++.+.
T Consensus 1 ~~Dis~G~E~~pI~~vN~vD~~~~p~~F~Yi~~~~~~~gv 40 (98)
T smart00468 1 CLDISNGKENVPVPLVNEVDEDPPPPDFEYISEYIYGQGV 40 (98)
T ss_pred CccccCCccCCCcceEecCCCCCCCCCcEECcceEcCCCc
Confidence 369999999999999999999866 689999999876654
No 12
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.49 E-value=1.6e-13 Score=117.39 Aligned_cols=54 Identities=35% Similarity=0.530 Sum_probs=40.7
Q ss_pred EEeccccCCcccccccCCCCCceeEEEEEeCCCcccEEEEEEcCCCCCCCeEEEecC
Q 017938 280 NIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYG 336 (363)
Q Consensus 280 ~IDa~~~GN~aRFINHSC~PNn~~~v~~~~~~~~~p~i~~fA~rdI~~GEELT~dYg 336 (363)
..++.....++.|+||||.| |+...+....+. ..+.|.|.|||++|||||++||
T Consensus 109 ~~~~~~l~p~~d~~NHsc~p-n~~~~~~~~~~~--~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 109 DRDGIALYPFADMLNHSCDP-NCEVSFDFDGDG--GCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEEETGGGGSEEESST-SEEEEEEEETTT--TEEEEEESS-B-TTSBEEEEST
T ss_pred cccccccCcHhHhecccccc-ccceeeEeeccc--ceEEEEECCccCCCCEEEEEEC
Confidence 45677788899999999999 555444321222 3999999999999999999998
No 13
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.01 E-value=4.5e-10 Score=116.80 Aligned_cols=302 Identities=24% Similarity=0.328 Sum_probs=210.0
Q ss_pred eeeeccchhhHHHHH------HHHhcCCCchhhhhHHhhhhhhhhhcccccccccccccCCcCCCCeeeEeCCCCCCCCC
Q 017938 19 EVDEEQKQNQFLQWA------RLILPWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAADKTPYAY 92 (363)
Q Consensus 19 ~~~~~~~~~~~~~~~------~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiS~G~E~~pI~~~N~vd~~~~~~ 92 (363)
.++|.-|+|+++.-. ++|-.||.-.|+.++.-...+-.-+.-.-.....+|.+.|.+.+|||.+|.+|+..+|.
T Consensus 823 ~fVciy~g~~l~~~~sdks~~~~~~~~~~~id~~~f~~~~dt~~~~tvD~~g~d~~d~~~g~sg~~~p~~~~~d~~~~~~ 902 (1262)
T KOG1141|consen 823 NFVCIYPGGALLHQISDKSEYIHVTRSLLTIDCFSFDARIDTATYITVDDKGLDVADFSLGTSGIPIPLVNSVDNDEPPS 902 (1262)
T ss_pred eEEEEecchhhhhhhchhhhhcccchhhhcccccchhccccccceeeccccccchhhhhccccCCCCccccccccCCCcc
Confidence 356667888888754 45556777777766655555544444444456678999999999999999999987777
Q ss_pred eEEcccCCCCCCCCCCCCCCCccccccccccccccccccccCCccccccccCCCCCCCCccCCCcCCCCCCCccCCCCCC
Q 017938 93 FIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDESESGCDCEECFEVGLGDGVFGCPCFS 172 (363)
Q Consensus 93 f~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~C~C~~~~~~~~~~~~~~c~C~~ 172 (363)
-+|......+- |.... +..+.+|+ ++|+|..++.+. ..|.|..
T Consensus 903 c~d~~~~~~~~-----------~~~~~---------s~~~~~~~------------~~~s~d~hp~d~-----~~~~~~~ 945 (1262)
T KOG1141|consen 903 CEDSKRRFQYN-----------DQVDI---------SSVSRDFC------------SGCSCDGHPSDA-----SKCECQQ 945 (1262)
T ss_pred ccccceeeccc-----------ccchh---------hhhccccc------------cccccCCCCccc-----CcccCCC
Confidence 67766443111 21111 11123332 567777666554 4555543
Q ss_pred C--------------------C-----C---ccceeeecCCCCCCCCCCCCccccCCCcccE--------EEEEeCCCCc
Q 017938 173 G--------------------L-----E---DVGIVSECGPSCGCGSECGNRLTQRGISVRL--------KIVRSVNKGW 216 (363)
Q Consensus 173 ~--------------------~-----~---~~~~i~EC~~~C~C~~~C~Nrv~q~g~~~~l--------eV~~t~~kGw 216 (363)
+ . . -....+||+..|.|...|.||++|.+.+.+. +||++...||
T Consensus 946 ~~~~~~~~cpp~~s~d~~~~~~eS~~~~ns~~~~~f~e~~~hss~~~~e~~~~v~~~~~~~me~~s~~~l~i~~~~~~~~ 1025 (1262)
T KOG1141|consen 946 LSIEAMKRCPPNLSFDGHDELYESSEKQNSFLKLFFFECNDHSSCHRKEYNRVVQNNIKYPMEVSSFNDLQIFKTAQSGW 1025 (1262)
T ss_pred CChhhhcCCCCccccCchhhhhhhhhhcchhhhccceeccccchhcccccchhhhcCCccceeeeecccccccccccccc
Confidence 2 0 0 1235789999999999999999999987764 4566778899
Q ss_pred ceeecccccCCcEEEEeeeEEeeHHHHHHHHHhhhc-------------cc-C--------CCCCC--------------
Q 017938 217 GLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDG-------------LA-S--------SPRNS-------------- 260 (363)
Q Consensus 217 GlrA~~~I~~G~fI~eY~Gevi~~~e~~~r~~~y~~-------------~~-~--------~~~~~-------------- 260 (363)
|+++..+|+.-+||++|+|...++.-+++....... +. + .+...
T Consensus 1026 ~~~edtD~~~~~~~~~~~~~ppt~~l~~~~r~aqad~~sn~~D~~~~~~l~es~~~~~T~~r~~t~~~~~~~~~d~dd~q 1105 (1262)
T KOG1141|consen 1026 GVREDTDIPQSTFICTYVGAPPTDDLADELRNAQADQYSNDLDLKDTVELEESREDHETDFRGDTSDYDDEEGSDGDDGQ 1105 (1262)
T ss_pred cccccccCCCCcccccccCCCCchhhHHHHhhhhhccccCccchhhhhhhhhcccccccccCCCCCCCcccccccCccHH
Confidence 999999999999999999999887655432211000 00 0 00000
Q ss_pred ---------------------------------------------cceeeeeccCCCCCc-----------ceeEEEecc
Q 017938 261 ---------------------------------------------SALLVIREHLPSGKA-----------CLRMNIDAT 284 (363)
Q Consensus 261 ---------------------------------------------~~~~~~~~~~~~~~~-----------~~~~~IDa~ 284 (363)
..+... +...+.+. -.-|+|||+
T Consensus 1106 ~I~k~ve~qd~~~~~~~T~~~~RQ~~~~s~k~~~~~s~~~~~~ts~~~~~~-dkges~~~~~~~~~~y~~~~~~yvIDAk 1184 (1262)
T KOG1141|consen 1106 DIMKMVERQDSSESGEETKRLTRQKRKQSKKSGKGGSVEKDDTTSRDSMEK-DKGESKDEPVFNWDKYFEPFPLYVIDAK 1184 (1262)
T ss_pred HHHHHhhcccccccccccchhhhhhhhhhhhcccCccccccccCccchhhh-ccCccCcccccchhhccCCCceEEEecc
Confidence 000000 00000000 013789999
Q ss_pred ccCCcccccccCCCCCc-eeEEEEEeCCCcccEEEEEEcCCCCCCCeEEEecCCC--CCCCCCceeeeCCCCCceec
Q 017938 285 RIGNIARFINHSCDGGN-LSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEI--RARPRGLPCYCGSTSCFGIL 358 (363)
Q Consensus 285 ~~GN~aRFINHSC~PNn-~~~v~~~~~~~~~p~i~~fA~rdI~~GEELT~dYg~~--~~~~~~~~C~CGs~~Crg~l 358 (363)
..||++||+||||+||. +|+|+|++++.++|+++|||.|-|+||+||||||++. .+..+...|+||+.+|||+|
T Consensus 1185 ~eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CGa~~CrgrL 1261 (1262)
T KOG1141|consen 1185 QEGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCGAENCRGRL 1261 (1262)
T ss_pred cccchhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecChhhhhccc
Confidence 99999999999999964 4899999999999999999999999999999999987 66888999999999999997
No 14
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=98.96 E-value=2.3e-10 Score=116.47 Aligned_cols=150 Identities=30% Similarity=0.471 Sum_probs=104.5
Q ss_pred eeeecC-CCCCCCCCCCCccccCCCcccEEEEEeCCCCcceeecccccCCcEEEEeeeEEeeHHHHHHHHHhhhcccCCC
Q 017938 179 IVSECG-PSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSP 257 (363)
Q Consensus 179 ~i~EC~-~~C~C~~~C~Nrv~q~g~~~~leV~~t~~kGwGlrA~~~I~~G~fI~eY~Gevi~~~e~~~r~~~y~~~~~~~ 257 (363)
..+||- ..|.+...|.|+-.-+..... +.+ +|..+|.+| +|++++..+...|...-.. ..
T Consensus 288 ~~~~~~p~~~~~~~~~~~~~~sk~~~~e------~~~----~~~~~~~k~------vg~~i~~~e~~~~~~~~~~---~~ 348 (463)
T KOG1081|consen 288 LAYEVHPKVCSAEERCHNQQFSKESYPE------PQK----TAKADIRKG------VGEVIDDKECKARLQRVKE---SD 348 (463)
T ss_pred hhhhhcccccccccccccchhhhhcccc------cch----hhHHhhhcc------cCcccchhhheeehhhhhc---cc
Confidence 445665 459999999998774432222 222 888999999 9999998876655432221 11
Q ss_pred CCCcceeeeeccCCCCCcceeEEEeccccCCcccccccCCCCCceeEEEEEeCCCcccEEEEEEcCCCCCCCeEEEecCC
Q 017938 258 RNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGE 337 (363)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~IDa~~~GN~aRFINHSC~PNn~~~v~~~~~~~~~p~i~~fA~rdI~~GEELT~dYg~ 337 (363)
....++.++..+ ..||+...||.+||+||||.| ++....+...+. .++.++|.++|++|||||++|..
T Consensus 349 ~~~~~~~~~e~~---------~~id~~~~~n~sr~~nh~~~~-~v~~~k~~~~~~--t~~~~~a~~~i~~g~e~t~~~n~ 416 (463)
T KOG1081|consen 349 LVDFYMVFIQKD---------RIIDAGPKGNYSRFLNHSCQP-NVETEKWQVIGD--TRVGLFAPRQIEAGEELTFNYNG 416 (463)
T ss_pred hhhhhhhhhhcc---------cccccccccchhhhhcccCCC-ceeechhheecc--cccccccccccccchhhhheeec
Confidence 111122222222 269999999999999999999 554433333232 59999999999999999999996
Q ss_pred CCCCCCCceeeeCCCCCceecCC
Q 017938 338 IRARPRGLPCYCGSTSCFGILPS 360 (363)
Q Consensus 338 ~~~~~~~~~C~CGs~~Crg~l~~ 360 (363)
... ...+.|.||+.+|.++++.
T Consensus 417 ~~~-~~~~~~~~~~e~~~~~~~k 438 (463)
T KOG1081|consen 417 NCE-GNEKRCCCGSENCTETKGK 438 (463)
T ss_pred ccc-CCcceEeecccccccCCcc
Confidence 533 4667999999999998764
No 15
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.88 E-value=1.9e-09 Score=103.84 Aligned_cols=117 Identities=25% Similarity=0.373 Sum_probs=82.6
Q ss_pred CCCcceeecccccCCcEEEEeeeEEeeHHHHHHHHHhhhcccCCCCCCcceeeeeccCCCCCcceeEEEeccccCCcccc
Q 017938 213 NKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARF 292 (363)
Q Consensus 213 ~kGwGlrA~~~I~~G~fI~eY~Gevi~~~e~~~r~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IDa~~~GN~aRF 292 (363)
..|--|.+++.+.+|+-|.-.+|-|..-.+++++.-.... ++..+.+...+ ..|..+++ .-|+|
T Consensus 136 ~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~g----~nDFSvmyStR------k~caqLwL------GPaaf 199 (453)
T KOG2589|consen 136 QNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRGG----GNDFSVMYSTR------KRCAQLWL------GPAAF 199 (453)
T ss_pred CCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhcc----CCceeeeeecc------cchhhhee------ccHHh
Confidence 5677889999999999999999999877777766432221 11111111111 11222333 33799
Q ss_pred cccCCCCCceeEEEEEeCCCcccEEEEEEcCCCCCCCeEEEecCCCCCCCCCceeeeCC
Q 017938 293 INHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGS 351 (363)
Q Consensus 293 INHSC~PNn~~~v~~~~~~~~~p~i~~fA~rdI~~GEELT~dYg~~~~~~~~~~C~CGs 351 (363)
|||-|.| |+.. +.+++. ++.+.++|||+||||||--||...+......|.|-+
T Consensus 200 INHDCrp-nCkF--vs~g~~---tacvkvlRDIePGeEITcFYgs~fFG~~N~~CeC~T 252 (453)
T KOG2589|consen 200 INHDCRP-NCKF--VSTGRD---TACVKVLRDIEPGEEITCFYGSGFFGENNEECECVT 252 (453)
T ss_pred hcCCCCC-Ccee--ecCCCc---eeeeehhhcCCCCceeEEeecccccCCCCceeEEee
Confidence 9999999 5543 334433 899999999999999999999998888888888853
No 16
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=98.44 E-value=1.8e-07 Score=93.41 Aligned_cols=117 Identities=22% Similarity=0.326 Sum_probs=81.2
Q ss_pred CcccEEEEEe--CCCCcceeecccccCCcEEEEeeeEEeeHHHHHHHHHhhhcccCCCCCCcceeeeeccCCCCCcceeE
Q 017938 202 ISVRLKIVRS--VNKGWGLYADQFIKQGQFICEYAGELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRM 279 (363)
Q Consensus 202 ~~~~leV~~t--~~kGwGlrA~~~I~~G~fI~eY~Gevi~~~e~~~r~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (363)
+...|.|+.+ ...|.||++...|++|+--+-|.|+++.....+ ..+..|+..+... + ...+
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~~~~------------~~n~~y~W~I~~~--d---~~~~ 88 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASIDSK------------SANNRYMWEIFSS--D---NGYE 88 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCccccccccc------------cccCcceEEEEeC--C---CceE
Confidence 5677888876 478899999999999999999999982211100 0111122222211 0 0237
Q ss_pred EEeccc--cCCcccccccCCCCCceeEEEEEeCCCcccEEEEEEcCCCCCCCeEEEecCCCC
Q 017938 280 NIDATR--IGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIR 339 (363)
Q Consensus 280 ~IDa~~--~GN~aRFINHSC~PNn~~~v~~~~~~~~~p~i~~fA~rdI~~GEELT~dYg~~~ 339 (363)
+||++. ..||.||+|=+++. -.|+.+....+. .|.++|.|+|++||||.+.|+.++
T Consensus 89 ~iDg~d~~~sNWmRYV~~Ar~~-eeQNL~A~Q~~~---~Ifyrt~r~I~p~eELlVWY~~e~ 146 (396)
T KOG2461|consen 89 YIDGTDEEHSNWMRYVNSARSE-EEQNLLAFQIGE---NIFYRTIRDIRPNEELLVWYGSEY 146 (396)
T ss_pred EeccCChhhcceeeeecccCCh-hhhhHHHHhccC---ceEEEecccCCCCCeEEEEeccch
Confidence 899887 78999999998887 333332223333 899999999999999999999763
No 17
>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression. SETDB1 and other proteins in this group have a similar domain architecture. SETDB1 is a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.
Probab=97.26 E-value=5.9e-05 Score=55.44 Aligned_cols=30 Identities=13% Similarity=-0.031 Sum_probs=27.7
Q ss_pred ccceeeeeeccchhhHHHHHHHHhcCCCch
Q 017938 14 HKRTIEVDEEQKQNQFLQWARLILPWLTPG 43 (363)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~ 43 (363)
++...+|.|++|||+.|+.+.||..||.++
T Consensus 20 ~~~k~~V~Y~aPCGr~Lr~~~EV~~YL~~t 49 (60)
T cd01395 20 GKVKKHVIYKAPCGRSLRNMSEVHRYLRET 49 (60)
T ss_pred CCcccceEEECCcchhhhcHHHHHHHHHhc
Confidence 356789999999999999999999999988
No 18
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=96.89 E-value=0.00055 Score=41.69 Aligned_cols=17 Identities=41% Similarity=1.087 Sum_probs=15.1
Q ss_pred CceeeeCCCCCceecCC
Q 017938 344 GLPCYCGSTSCFGILPS 360 (363)
Q Consensus 344 ~~~C~CGs~~Crg~l~~ 360 (363)
.+.|+|||.+|||+|+.
T Consensus 2 ~~~C~CGs~~CRG~l~~ 18 (26)
T smart00508 2 KQPCLCGAPNCRGFLGX 18 (26)
T ss_pred CeeeeCCCccccceecc
Confidence 57999999999999954
No 19
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=96.76 E-value=0.00072 Score=48.09 Aligned_cols=29 Identities=34% Similarity=0.840 Sum_probs=24.6
Q ss_pred CCCCCCCccceeeecCCCCCCCCCCCCccccCC
Q 017938 169 PCFSGLEDVGIVSECGPSCGCGSECGNRLTQRG 201 (363)
Q Consensus 169 ~C~~~~~~~~~i~EC~~~C~C~~~C~Nrv~q~g 201 (363)
.|+++ .+.+||+..|+|+..|.||.+|+.
T Consensus 21 dClNR----~l~~EC~~~C~~G~~C~NqrFqk~ 49 (51)
T smart00570 21 DCLNR----MLLIECSSDCPCGSYCSNQRFQKR 49 (51)
T ss_pred HHHHH----HHhhhcCCCCCCCcCccCcccccC
Confidence 36664 578999888999999999999976
No 20
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=90.88 E-value=0.41 Score=48.43 Aligned_cols=41 Identities=34% Similarity=0.579 Sum_probs=30.2
Q ss_pred ccccCCCCCceeEEEEEeCCCcccEEEEEEcCCCCCCC-eEEEecCCCC
Q 017938 292 FINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGE-ELAFSYGEIR 339 (363)
Q Consensus 292 FINHSC~PNn~~~v~~~~~~~~~p~i~~fA~rdI~~GE-ELT~dYg~~~ 339 (363)
++||||.|| .. +. ..+. ..++.+.+.+.+++ ||+..|.+..
T Consensus 208 ~~~hsC~pn-~~-~~--~~~~---~~~~~~~~~~~~~~~~l~~~y~~~~ 249 (482)
T KOG2084|consen 208 LFNHSCFPN-IS-VI--FDGR---GLALLVPAGIDAGEEELTISYTDPL 249 (482)
T ss_pred hcccCCCCC-eE-EE--ECCc---eeEEEeecccCCCCCEEEEeecccc
Confidence 789999994 44 22 2232 67788888888887 9999998663
No 21
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=90.88 E-value=0.056 Score=41.88 Aligned_cols=31 Identities=10% Similarity=-0.003 Sum_probs=27.8
Q ss_pred ccceeeeeeccchhhHHHHHHHHhcCCCchh
Q 017938 14 HKRTIEVDEEQKQNQFLQWARLILPWLTPGE 44 (363)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~ 44 (363)
.....+|.|.+|||+-||.+.+|..||....
T Consensus 24 ~~~~~dV~Y~sP~GkklRs~~ev~~YL~~~~ 54 (77)
T smart00391 24 SAGKFDVYYISPCGKKLRSKSELARYLHKNG 54 (77)
T ss_pred CCCcccEEEECCCCCeeeCHHHHHHHHHhCC
Confidence 4567999999999999999999999998764
No 22
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity. The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.
Probab=88.66 E-value=0.14 Score=39.20 Aligned_cols=30 Identities=13% Similarity=0.032 Sum_probs=26.2
Q ss_pred ccceeeeeeccchhhHHHHHHHHhcCCCch
Q 017938 14 HKRTIEVDEEQKQNQFLQWARLILPWLTPG 43 (363)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~ 43 (363)
....-||.|.+|||+-|+...+|.+||...
T Consensus 21 ~~~~~dV~Y~aPcGKklRs~~ev~~yL~~~ 50 (73)
T cd01397 21 GRIQGEVAYYAPCGKKLRQYPEVIKYLSKN 50 (73)
T ss_pred CCccceEEEECCCCcccccHHHHHHHHHhC
Confidence 345668999999999999999999999863
No 23
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=88.45 E-value=0.12 Score=38.16 Aligned_cols=29 Identities=10% Similarity=-0.074 Sum_probs=26.8
Q ss_pred cceeeeeeccchhhHHHHHHHHhcCCCch
Q 017938 15 KRTIEVDEEQKQNQFLQWARLILPWLTPG 43 (363)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~~ 43 (363)
....+|.|.+|||+-||.+.+|..||..+
T Consensus 22 ~~k~dv~Y~sP~Gk~~Rs~~ev~~yL~~~ 50 (62)
T cd00122 22 AGKGDVYYYSPCGKKLRSKPEVARYLEKT 50 (62)
T ss_pred CCcceEEEECCCCceecCHHHHHHHHHhC
Confidence 56789999999999999999999999875
No 24
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=82.51 E-value=0.29 Score=37.73 Aligned_cols=31 Identities=6% Similarity=-0.002 Sum_probs=27.7
Q ss_pred cceeeeeeccchhhHHHHHHHHhcCCCchhh
Q 017938 15 KRTIEVDEEQKQNQFLQWARLILPWLTPGEL 45 (363)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 45 (363)
....+|.|.+|+|+-++.+.+|+.||..+..
T Consensus 28 ~~~~dv~Y~sP~Gk~~RS~~eV~~yL~~~~~ 58 (77)
T PF01429_consen 28 AGKKDVYYYSPCGKRFRSKKEVVRYLKENPS 58 (77)
T ss_dssp TTSEEEEEEETTSEEESSHHHHHHHHTTSS-
T ss_pred CCceEEEEECCCCCEEeCHHHHHHHHHhCCC
Confidence 3579999999999999999999999998764
No 25
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=82.13 E-value=1.1 Score=46.35 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=31.5
Q ss_pred ccccCCCCCceeEEEEEeCCCcccEEEEEEcCCCCCCCeEEEecCCC
Q 017938 292 FINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEI 338 (363)
Q Consensus 292 FINHSC~PNn~~~v~~~~~~~~~p~i~~fA~rdI~~GEELT~dYg~~ 338 (363)
+.||++.+ ....+...+ +.+.+++.++|.+|||+++.||..
T Consensus 239 ~~NH~~~~---~~~~~~~~d---~~~~l~~~~~v~~geevfi~YG~~ 279 (472)
T KOG1337|consen 239 LLNHSPEV---IKAGYNQED---EAVELVAERDVSAGEEVFINYGPK 279 (472)
T ss_pred hhccCchh---ccccccCCC---CcEEEEEeeeecCCCeEEEecCCC
Confidence 57999987 222333333 389999999999999999999964
No 26
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=74.71 E-value=1.3 Score=30.18 Aligned_cols=37 Identities=32% Similarity=0.924 Sum_probs=26.1
Q ss_pred CCCccCCCcCCCCCCCccCCCCCCCCCccceeeecCCCCCCCCCCCCcc
Q 017938 149 SGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSECGNRL 197 (363)
Q Consensus 149 ~~C~C~~~~~~~~~~~~~~c~C~~~~~~~~~i~EC~~~C~C~~~C~Nrv 197 (363)
.+|.|...-... .||.|+.. ...|++.|.| ..|.|+.
T Consensus 4 ~gC~Ckks~Clk-----~YC~Cf~~------g~~C~~~C~C-~~C~N~~ 40 (42)
T PF03638_consen 4 KGCNCKKSKCLK-----LYCECFQA------GRFCTPNCKC-QNCKNTE 40 (42)
T ss_pred CCCcccCcChhh-----hhCHHHHC------cCcCCCCccc-CCCCCcC
Confidence 578886433223 68999863 4589999999 5788864
No 27
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=72.29 E-value=2.9 Score=28.45 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCchhhhhHHhhhhhhhhhccc
Q 017938 29 FLQWARLILPWLTPGELANVSLTCRTLSQISKS 61 (363)
Q Consensus 29 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~ 61 (363)
+-+...+|+.||.+.|+.+++.+|+.+.++...
T Consensus 5 P~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~ 37 (47)
T PF12937_consen 5 PDEILLEIFSYLDPRDLLRLSLVCRRWRRIAND 37 (47)
T ss_dssp -HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCC
Confidence 345678899999999999999999999877643
No 28
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=63.93 E-value=4.7 Score=27.27 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=27.6
Q ss_pred hHHHHHHHHhcCCCchhhhhHHhhhhhhhhhcccc
Q 017938 28 QFLQWARLILPWLTPGELANVSLTCRTLSQISKSI 62 (363)
Q Consensus 28 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 62 (363)
.+.+.+++|+.+|.+.|+.+++.+|+.+.++.+..
T Consensus 6 LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 6 LPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp S-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred CCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence 34568899999999999999999999998876654
No 29
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=63.13 E-value=4.7 Score=28.97 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=11.4
Q ss_pred EEEEcCCCCCCCeEE
Q 017938 318 CFFASKDIKEGEELA 332 (363)
Q Consensus 318 ~~fA~rdI~~GEELT 332 (363)
.++|.|||++|+.|+
T Consensus 3 vvVA~~di~~G~~i~ 17 (63)
T PF08666_consen 3 VVVAARDIPAGTVIT 17 (63)
T ss_dssp EEEESSTB-TT-BEC
T ss_pred EEEEeCccCCCCEEc
Confidence 478999999999995
No 30
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=55.36 E-value=12 Score=23.91 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCchhhhhHHhhhhhhhhhccc
Q 017938 31 QWARLILPWLTPGELANVSLTCRTLSQISKS 61 (363)
Q Consensus 31 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~ 61 (363)
+...+|+.+|.+.|+..+...|+.+..+.+.
T Consensus 4 ~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 4 EILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 4567899999999999999999999876554
No 31
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=49.06 E-value=4.3 Score=31.34 Aligned_cols=29 Identities=7% Similarity=-0.006 Sum_probs=26.4
Q ss_pred cceeeeeeccchhhHHHHHHHHhcCCCch
Q 017938 15 KRTIEVDEEQKQNQFLQWARLILPWLTPG 43 (363)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~~ 43 (363)
....+|.|.+|+|.-+|...+|..||...
T Consensus 23 ~~k~DvyY~sP~Gkk~RS~~ev~~yL~~~ 51 (77)
T cd01396 23 AGKFDVYYISPTGKKFRSKVELARYLEKN 51 (77)
T ss_pred CCcceEEEECCCCCEEECHHHHHHHHHhC
Confidence 46789999999999999999999999874
No 32
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=45.62 E-value=7.2 Score=40.33 Aligned_cols=137 Identities=9% Similarity=-0.038 Sum_probs=76.8
Q ss_pred eCCCCcc---eeecccccCCcEEEEeeeEEeeHHH--HHHHHHhhhcccCCCCCCcceeeeeccCCCCCcceeEEEeccc
Q 017938 211 SVNKGWG---LYADQFIKQGQFICEYAGELLTTKE--ARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDATR 285 (363)
Q Consensus 211 t~~kGwG---lrA~~~I~~G~fI~eY~Gevi~~~e--~~~r~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IDa~~ 285 (363)
.+..+|+ .+|.+.+..|++|+.++|+.....- ...+ .+... .....-.+..... ......++..
T Consensus 120 ~~~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c~vc~~~--~~~~~---~~~~~~~f~~~~~------~~~~~~~~~~ 188 (463)
T KOG1081|consen 120 LEKCSKRCTDCRAFKKREVGDLVWSKVGEYPWWPCMVCHDP--LLPKG---MKHDHVNFFGCYA------WTHEKRVFPY 188 (463)
T ss_pred CcccccCCcceeeeccccceeEEeEEcCcccccccceecCc--ccchh---hccccceeccchh------hHHHhhhhhc
Confidence 3455565 8888899999999999999876541 0100 00000 0000001110000 1112345555
Q ss_pred cCCcccccccCCCCCceeEEEEEeCCCcccEEEEEEcCCCCCCCe------EEEecCCCCCCCCCceeeeCCCCCceecC
Q 017938 286 IGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEE------LAFSYGEIRARPRGLPCYCGSTSCFGILP 359 (363)
Q Consensus 286 ~GN~aRFINHSC~PNn~~~v~~~~~~~~~p~i~~fA~rdI~~GEE------LT~dYg~~~~~~~~~~C~CGs~~Crg~l~ 359 (363)
.|+..++++|++.|+-......... .+++..++.+.++.++- ++.+|....+ .....+.+.+..|...+.
T Consensus 189 ~g~~~~~l~~~~~~~s~~~~~~~~~---~~r~~~~~~q~~~~~~~~e~k~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~ 264 (463)
T KOG1081|consen 189 EGQSSKLIPHSKKPASTMSEKIKEA---KARFGKLKAQWEAGIKQKELKPEEYKRIKVVCP-IGDQQIYSAAVSCIKKLL 264 (463)
T ss_pred cchHHHhhhhccccchhhhhhhhcc---cchhhhcccchhhccchhhcccccccccccccC-cCcccccchhhhhhhhcc
Confidence 9999999999999964333222221 24777777777777765 5555554322 233347777777776665
Q ss_pred CCC
Q 017938 360 SEN 362 (363)
Q Consensus 360 ~~~ 362 (363)
...
T Consensus 265 ~~~ 267 (463)
T KOG1081|consen 265 AKP 267 (463)
T ss_pred ccc
Confidence 543
No 33
>smart00858 SAF This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.
Probab=36.13 E-value=24 Score=25.07 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=13.8
Q ss_pred EEEEcCCCCCCCeEEE
Q 017938 318 CFFASKDIKEGEELAF 333 (363)
Q Consensus 318 ~~fA~rdI~~GEELT~ 333 (363)
.+.|.++|++|+.|+-
T Consensus 3 v~va~~~i~~G~~i~~ 18 (64)
T smart00858 3 VVVAARDLPAGEVITA 18 (64)
T ss_pred EEEEeCccCCCCCcch
Confidence 4678999999999984
No 34
>PF11403 Yeast_MT: Yeast metallothionein; InterPro: IPR022710 Metallothioneins are characterised by an abundance of cysteine residues and a lack of generic secondary structure motifs. This protein functions in primary metal storage, transport and detoxification []. For the first 40 residues in the protein the polypeptide wraps around the metal by forming two large parallel loops separated by a deep cleft containing the metal cluster []. ; PDB: 1AQS_A 1AQR_A 1RJU_V 1FMY_A 1AOO_A 1AQQ_A.
Probab=34.64 E-value=35 Score=22.07 Aligned_cols=9 Identities=22% Similarity=0.763 Sum_probs=4.0
Q ss_pred CCCccCCCc
Q 017938 149 SGCDCEECF 157 (363)
Q Consensus 149 ~~C~C~~~~ 157 (363)
..|+|..+|
T Consensus 22 kscscptgc 30 (40)
T PF11403_consen 22 KSCSCPTGC 30 (40)
T ss_dssp TS-SS-TTT
T ss_pred hcCCCCCCC
Confidence 456666555
No 35
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.66 E-value=30 Score=35.50 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=31.6
Q ss_pred ccccccCCCCCceeEEEEEeCCCcccEEEEEEcCCCCCCCeEEEecCC
Q 017938 290 ARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGE 337 (363)
Q Consensus 290 aRFINHSC~PNn~~~v~~~~~~~~~p~i~~fA~rdI~~GEELT~dYg~ 337 (363)
+.-+.||-+| |+..+.....-....--.++-+|+...|||+|-|+..
T Consensus 205 GsrvrHsdeP-nf~~aPf~fmPq~vaYsimwp~k~~~tgeE~trDfas 251 (631)
T KOG2155|consen 205 GSRVRHSDEP-NFRIAPFMFMPQNVAYSIMWPTKPVNTGEEITRDFAS 251 (631)
T ss_pred hhhhccCCCC-cceeeeheecchhcceeEEeeccCCCCchHHHHHHhh
Confidence 3447999999 5544332222222335568899999999999988754
No 36
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=25.39 E-value=79 Score=24.60 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=13.9
Q ss_pred cceeecccccCCcEEE
Q 017938 216 WGLYADQFIKQGQFIC 231 (363)
Q Consensus 216 wGlrA~~~I~~G~fI~ 231 (363)
..++|+++|++|+=|.
T Consensus 98 ~~~~a~r~I~~GeEi~ 113 (116)
T smart00317 98 IVIFALRDIKPGEELT 113 (116)
T ss_pred EEEEECCCcCCCCEEe
Confidence 6889999999999764
No 37
>PF01847 VHL: von Hippel-Lindau disease tumour suppressor protein; InterPro: IPR022772 Von Hippel-Lindau disease tumor suppressor (VHL) has two domains: a roughly 100-residue N-terminal domain rich in beta sheet (beta domain) and a smaller alpha-helical domain (alpha domain), held together by two linkers and a polar interface. A large portion of the alpha domain surface, and a small portion of the beta domain, interact with ElonginC. About half of the tumorigenic mutations map to the alpha domain and its residues that contact ElonginC. The remaining mutations map to the beta domain, and significantly, to a beta domain surface patch uninvolved in ElonginC binding. This suggests that two intact macromolecular binding sites may be required for the tumor suppressor effects of VHL []. This entry represents both beta and alpha domains of VHL.; PDB: 3ZRF_L 3ZRC_C 1LM8_V 1LQB_C 1VCB_F.
Probab=21.67 E-value=1e+02 Score=27.11 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=20.0
Q ss_pred ccccccCCCCCceeEEEEEeCCCcccEEEEEEcCCCCCCCeEEEe
Q 017938 290 ARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFS 334 (363)
Q Consensus 290 aRFINHSC~PNn~~~v~~~~~~~~~p~i~~fA~rdI~~GEELT~d 334 (363)
.+|+|+|..+ +..++++..|. -..| ..|+||++..++
T Consensus 17 V~F~N~s~r~--V~v~Wldy~G~----~~~Y--~~L~Pg~~~~~~ 53 (156)
T PF01847_consen 17 VRFVNRSPRT--VDVYWLDYDGK----PVPY--GTLKPGQGRRQN 53 (156)
T ss_dssp EEEEE-SSS---EEEEEE-TTS-----EEE-----B-TTEEEEEE
T ss_pred EEEEECCCCE--EEEEEEcCCCc----Eeec--cccCCCCeEEcc
Confidence 5899998775 56666777664 3334 448888887643
No 38
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=20.96 E-value=52 Score=32.48 Aligned_cols=20 Identities=40% Similarity=0.499 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCCCCeEEEec
Q 017938 316 RLCFFASKDIKEGEELAFSY 335 (363)
Q Consensus 316 ~i~~fA~rdI~~GEELT~dY 335 (363)
|-.++|.+||++||.||.+-
T Consensus 277 rrsl~a~~di~~G~~lt~~~ 296 (329)
T TIGR03569 277 RKSLVAAKDIKKGEIFTEDN 296 (329)
T ss_pred ceEEEEccCcCCCCEecHHh
Confidence 66799999999999999754
No 39
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=20.14 E-value=1.4e+02 Score=25.60 Aligned_cols=37 Identities=16% Similarity=0.324 Sum_probs=24.5
Q ss_pred ccccccCCCCCceeEEEEEeCCCcccEEEEEEcCCCCCCCeEEEe
Q 017938 290 ARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFS 334 (363)
Q Consensus 290 aRFINHSC~PNn~~~v~~~~~~~~~p~i~~fA~rdI~~GEELT~d 334 (363)
.+|+|++-.+ ++..+++..|. ...|+ .|+||++.+.+
T Consensus 11 v~F~N~t~~~--v~~~Wid~~G~----~~~Y~--~l~pg~~~~~~ 47 (141)
T cd05468 11 VRFVNRTDRP--VELYWIDYDGK----PVSYG--TLQPGETVRQN 47 (141)
T ss_pred EEEEeCCCCe--EEEEEECCCCC----EEEee--eeCCCCEEeec
Confidence 3789998654 56666776664 33444 48888887654
Done!