Your job contains 1 sequence.
>017939
MASSDVASMAVEPSKKPRSRRALKPKNSLANEAVVMAQTPSQSPIPNPPDAGLSKENHES
LSQPKKAAAKGKAKQATKKQDTSFDKDLQEMQEMLEKMKLEKEKTEELLKEKDEMLKMKE
EELELQGKEQEKLHMELKKLQKMKEFKPNMTLPIVQCLKDKEQDRKKKGCAERKRPSPPY
ILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKE
RRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYFLFS
SERRAALLADNKNVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKRRMKE
LLV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017939
(363 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2136103 - symbol:3xHMG-box1 "3xHigh Mobility G... 559 2.0e-57 2
TAIR|locus:2128504 - symbol:3xHMG-box2 "3xHigh Mobility G... 545 5.4e-57 2
SGD|S000004676 - symbol:ABF2 "Mitochondrial DNA-binding p... 89 2.2e-05 3
UNIPROTKB|G4MS97 - symbol:MGG_04489 "Non-histone chromoso... 83 2.3e-05 2
ASPGD|ASPL0000037691 - symbol:AN2885 species:162425 "Emer... 91 0.00060 1
SGD|S000002157 - symbol:NHP6B "High-mobility group (HMG) ... 90 0.00078 1
>TAIR|locus:2136103 [details] [associations]
symbol:3xHMG-box1 "3xHigh Mobility Group-box1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
EMBL:AL161531 GO:GO:0003677 GO:GO:0003700 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AF080120 EMBL:AL049876 HSSP:P07155 EMBL:AY133687 EMBL:AJ630485
EMBL:AY568657 IPI:IPI00533286 PIR:T01926 PIR:T08187
RefSeq:NP_192846.1 UniGene:At.33587 ProteinModelPortal:Q9T012
SMR:Q9T012 EnsemblPlants:AT4G11080.1 GeneID:826709
KEGG:ath:AT4G11080 TAIR:At4g11080 HOGENOM:HOG000238964
InParanoid:Q9T012 KO:K09273 OMA:CKDQWNE PhylomeDB:Q9T012
ProtClustDB:CLSN2686000 Genevestigator:Q9T012 Uniprot:Q9T012
Length = 446
Score = 559 (201.8 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
Identities = 111/205 (54%), Positives = 136/205 (66%)
Query: 136 ELKKLQKMKEFKPNMTLPIVQCLKDKEQDRK----KKGCAERKRPSPPYILWCKDQWNEA 191
ELKKLQKMKEFKPNMT Q L E+++K KK CAE KRPS PYILWCKD WNE
Sbjct: 88 ELKKLQKMKEFKPNMTFAFSQSLAQTEEEKKGKKKKKDCAETKRPSTPYILWCKDNWNEV 147
Query: 192 KKENPEAEFKEITNILGAKWKNVSXXXXXXXXXXXXXXXXXXLQVMAKERRESEAMKLLE 251
KK+NPEA+FKE +NILGAKWK +S LQV+ KE+RE EAMKLL+
Sbjct: 148 KKQNPEADFKETSNILGAKWKGISAEEKKPYEEKYQADKEAYLQVITKEKREREAMKLLD 207
Query: 252 EEHKQKTAMELLEQYLQFXXXXXXXXXXXXXXXXXXXX-XHPVTAYFLFSSERRAALLAD 310
+E KQKTAMELL+QYL F P++AY ++++ERRAAL +
Sbjct: 208 DEQKQKTAMELLDQYLHFVQEAEHDNKKKAKKIKDPLKPKQPISAYLIYANERRAALKGE 267
Query: 311 NKNVLEVAKITGEEWKNMTEEQKRP 335
NK+V+EVAK+ GEEWKN++EE+K P
Sbjct: 268 NKSVIEVAKMAGEEWKNLSEEKKAP 292
Score = 108 (43.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 45/191 (23%), Positives = 81/191 (42%)
Query: 160 DKEQDRKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSXXXX 219
+K++ +K K + K+P Y+++ ++ K EN E+ + G +WKN+S
Sbjct: 233 NKKKAKKIKDPLKPKQPISAYLIYANERRAALKGENKSVI--EVAKMAGEEWKNLSEEKK 290
Query: 220 XXXXXXXXXXXXXXLQVMA--KERRESEAM--KLLEEE----HKQKTAMELLEQYLQFXX 271
LQ M K +E EAM K EEE HKQ+ A++LL++ +
Sbjct: 291 APYDQMAKKNKEIYLQEMEGYKRTKEEEAMSQKKEEEEFMKLHKQE-ALQLLKKKEKTDN 349
Query: 272 XXXXXXXXXXXXXXXXXXX-----HPVTAYFLFSSERRAALLADNKNVLEVAKITGE--- 323
P ++YFLF + R ++L ++ + + +T
Sbjct: 350 IIKKTKETAKNKKKNENVDPNKPKKPTSSYFLFCKDARKSVLEEHPGINN-STVTAHISL 408
Query: 324 EWKNMTEEQKR 334
+W + EE+K+
Sbjct: 409 KWMELGEEEKQ 419
Score = 49 (22.3 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 4 SDVASMAVEPSKKPRSRRALKPKNSLANEAVV 35
S V+S K SR+ALK KN + + V
Sbjct: 2 STVSSDPAHAKKSRNSRKALKQKNEIVESSPV 33
>TAIR|locus:2128504 [details] [associations]
symbol:3xHMG-box2 "3xHigh Mobility Group-box2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0000226 "microtubule cytoskeleton
organization" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0006084 "acetyl-CoA metabolic process"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0042127 "regulation of
cell proliferation" evidence=RCA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AL161560 EMBL:AL035394 HSSP:P07155
HOGENOM:HOG000238964 KO:K09273 ProtClustDB:CLSN2686000
EMBL:AY074353 EMBL:AY096398 EMBL:AY125491 IPI:IPI00533790
PIR:T05612 RefSeq:NP_194111.1 UniGene:At.2572 UniGene:At.71059
ProteinModelPortal:Q9SUP7 SMR:Q9SUP7 STRING:Q9SUP7 PaxDb:Q9SUP7
PRIDE:Q9SUP7 EnsemblPlants:AT4G23800.1 GeneID:828480
KEGG:ath:AT4G23800 TAIR:At4g23800 eggNOG:NOG327891
InParanoid:Q9SUP7 OMA:FCNERRA PhylomeDB:Q9SUP7
Genevestigator:Q9SUP7 Uniprot:Q9SUP7
Length = 456
Score = 545 (196.9 bits), Expect = 5.4e-57, Sum P(2) = 5.4e-57
Identities = 109/207 (52%), Positives = 139/207 (67%)
Query: 135 MELKKLQKMKEFKPNMTLP-----IVQCLKDKEQDRKKKGCAERKRPSPPYILWCKDQWN 189
+ELKKLQKMKEFKPNMT + Q ++K +KKK C E KRPS Y+LWCKDQW
Sbjct: 95 VELKKLQKMKEFKPNMTFACGQSSLTQAEQEKANKKKKKDCPETKRPSSSYVLWCKDQWT 154
Query: 190 EAKKENPEAEFKEITNILGAKWKNVSXXXXXXXXXXXXXXXXXXLQVMAKERRESEAMKL 249
E KKENPEA+FKE +NILGAKWK++S LQV+AKE+RE EAMKL
Sbjct: 155 EVKKENPEADFKETSNILGAKWKSLSAEDKKPYEERYQVEKEAYLQVIAKEKREKEAMKL 214
Query: 250 LEEEHKQKTAMELLEQYLQFXXXXXXXXXXXXXXXXXXXX-XHPVTAYFLFSSERRAALL 308
LE++ KQ+TAMELL+QYL F HPV+A+ ++++ERRAAL
Sbjct: 215 LEDDQKQRTAMELLDQYLNFVQEAEQDNKKKNKKEKDPLKPKHPVSAFLVYANERRAALR 274
Query: 309 ADNKNVLEVAKITGEEWKNMTEEQKRP 335
+NK+V+EVAKITGEEWKN+++++K P
Sbjct: 275 EENKSVVEVAKITGEEWKNLSDKKKAP 301
Score = 135 (52.6 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 50/195 (25%), Positives = 83/195 (42%)
Query: 158 LKDKEQDRKKKGCAER-----KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWK 212
+++ EQD KKK E+ K P ++++ ++ ++EN E+ I G +WK
Sbjct: 235 VQEAEQDNKKKNKKEKDPLKPKHPVSAFLVYANERRAALREENKSVV--EVAKITGEEWK 292
Query: 213 NVSXXXXXXXXXXXXXXXXXXLQVMAKERR--ESEAM--KLLEEE----HKQKTAMELL- 263
N+S LQ M + +R E EA+ K EEE HKQ+ A+++L
Sbjct: 293 NLSDKKKAPYEKVAKKNKETYLQAMEEYKRTKEEEALSQKKEEEELLKLHKQE-ALQMLK 351
Query: 264 --EQYLQFXXXXXXXXXXXXXXXXXXXXXHPVTAYFLFSSERRAALLADNK--NVLEVAK 319
E+ P ++YFLFS + R L + N V
Sbjct: 352 KKEKTDNLIKKEKATKKKKNENVDPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTA 411
Query: 320 ITGEEWKNMTEEQKR 334
+ +WK ++EE+K+
Sbjct: 412 LISLKWKELSEEEKQ 426
Score = 59 (25.8 bits), Expect = 5.4e-57, Sum P(2) = 5.4e-57
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 13 PSKKPR-SRRALKPKNSL 29
P+KKPR SR+ALK KN L
Sbjct: 9 PTKKPRNSRKALKQKNEL 26
>SGD|S000004676 [details] [associations]
symbol:ABF2 "Mitochondrial DNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0090139
"mitochondrial DNA packaging" evidence=IMP] [GO:0000001
"mitochondrion inheritance" evidence=IMP] [GO:0000002
"mitochondrial genome maintenance" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0000262 "mitochondrial chromosome"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA]
InterPro:IPR009071 SGD:S000004676 Pfam:PF00505 GO:GO:0005634
EMBL:M73753 EMBL:AJ223169 EMBL:Z48952 EMBL:AY557967 EMBL:BK006946
PIR:A41302 RefSeq:NP_013788.1 ProteinModelPortal:Q02486 SMR:Q02486
DIP:DIP-5492N IntAct:Q02486 MINT:MINT-505363 STRING:Q02486
PaxDb:Q02486 PeptideAtlas:Q02486 EnsemblFungi:YMR072W GeneID:855094
KEGG:sce:YMR072W CYGD:YMR072w eggNOG:COG5648
GeneTree:ENSGT00680000100562 OMA:FHESSKP OrthoDB:EOG483HF0
NextBio:978405 Genevestigator:Q02486 GermOnline:YMR072W
GO:GO:0000262 GO:GO:0008301 GO:GO:0090139 GO:GO:0000001
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Uniprot:Q02486
Length = 183
Score = 89 (36.4 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNV 214
KRP+ Y L+ +D ++ KENP EI+ I G KW+N+
Sbjct: 44 KRPTSAYFLYLQDHRSQFVKENPTLRPAEISKIAGEKWQNL 84
Score = 57 (25.1 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 11/44 (25%), Positives = 27/44 (61%)
Query: 292 PVTAYFLFSSERRAALLADN--KNVLEVAKITGEEWKNMTEEQK 333
P + +++E R+ + A + K+ L++ KI G++W+++ + K
Sbjct: 119 PAGPFIKYANEVRSQVFAQHPDKSQLDLMKIIGDKWQSLDQSIK 162
Score = 36 (17.7 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 234 LQVMAKERRESEAMKLLEEEHKQK 257
L+ KE+ SE KL E K K
Sbjct: 84 LEADIKEKYISERKKLYSEYQKAK 107
>UNIPROTKB|G4MS97 [details] [associations]
symbol:MGG_04489 "Non-histone chromosomal protein 6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR009071 Pfam:PF00505
GO:GO:0043565 GO:GO:0006338 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CM001231
GO:GO:0031491 GO:GO:0051123 GO:GO:0032301 GO:GO:0034724
GO:GO:0070898 RefSeq:XP_003710967.1 ProteinModelPortal:G4MS97
SMR:G4MS97 EnsemblFungi:MGG_04489T0 GeneID:2678075
KEGG:mgr:MGG_04489 Uniprot:G4MS97
Length = 101
Score = 83 (34.3 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 293 VTAYFLFSSERRAALLADNKNVL--EVAKITGEEWKNMTEEQKRP 335
++AY F++E+R + +N V +V KI GE WK ++++Q+ P
Sbjct: 28 LSAYMFFANEQRDNVREENPGVTFGQVGKILGERWKALSDKQRAP 72
Score = 38 (18.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 10 AVEPSKKPRSRRALK----PKNSLA 30
A + S KP RRA K PK L+
Sbjct: 5 ATKKSAKPEKRRAKKDPMAPKRGLS 29
>ASPGD|ASPL0000037691 [details] [associations]
symbol:AN2885 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0070898 "RNA
polymerase III transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005694 GO:GO:0006355 GO:GO:0043565 GO:GO:0006281
EMBL:BN001306 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AACD01000051 GO:GO:0031491 HOGENOM:HOG000197861 GO:GO:0051123
GO:GO:0032301 OMA:FFANDNR OrthoDB:EOG4S7P0P GO:GO:0034724
GO:GO:0070898 RefSeq:XP_660489.1 ProteinModelPortal:Q5B995
SMR:Q5B995 STRING:Q5B995 EnsemblFungi:CADANIAT00010204
GeneID:2874036 KEGG:ani:AN2885.2 Uniprot:Q5B995
Length = 106
Score = 91 (37.1 bits), Expect = 0.00060, P = 0.00060
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 165 RKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVS 215
RKKK KR Y+ + D ++ ++ENP F ++ +LG KWK++S
Sbjct: 19 RKKKDPNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKMLGEKWKSLS 69
>SGD|S000002157 [details] [associations]
symbol:NHP6B "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI] [GO:0070898 "RNA polymerase III
transcriptional preinitiation complex assembly" evidence=IGI;IDA]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=ISS] InterPro:IPR009071
SGD:S000002157 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0043565 GO:GO:0006281 EMBL:BK006936
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006366
EMBL:X78993 GO:GO:0031491 GeneTree:ENSGT00560000076898
HOGENOM:HOG000197861 OMA:LANPNNK OrthoDB:EOG4S7P0P GO:GO:0070898
EMBL:X15318 EMBL:Z35957 EMBL:Z35959 EMBL:AY558566 EMBL:EF123125
PIR:S78076 RefSeq:NP_009647.2 ProteinModelPortal:P11633 SMR:P11633
DIP:DIP-6748N IntAct:P11633 MINT:MINT-615533 STRING:P11633
PaxDb:P11633 PeptideAtlas:P11633 EnsemblFungi:YBR089C-A
GeneID:852386 KEGG:sce:YBR089C-A CYGD:YBR089c-a NextBio:971195
Genevestigator:P11633 GermOnline:YBR089C-A Uniprot:P11633
Length = 99
Score = 90 (36.7 bits), Expect = 0.00078, P = 0.00078
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 293 VTAYFLFSSERRAALLADNKNVL--EVAKITGEEWKNMTEEQKRP 335
++AY F++E R + ++N +V +V +I GE WK +T E+K+P
Sbjct: 31 LSAYMFFANENRDIVRSENPDVTFGQVGRILGERWKALTAEEKQP 75
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.125 0.354 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 363 243 0.00097 113 3 11 23 0.38 34
32 0.45 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 611 (65 KB)
Total size of DFA: 189 KB (2107 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.24u 0.27s 20.51t Elapsed: 00:00:05
Total cpu time: 20.24u 0.27s 20.51t Elapsed: 00:00:06
Start: Fri May 10 06:51:31 2013 End: Fri May 10 06:51:37 2013