BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017939
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GZK|A Chain A, Structure Of A Complex Of Tandem Hmg Boxes And Dna
Length = 159
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 62/164 (37%), Gaps = 34/164 (20%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSXXXXXXXXXXXXXXXXXX 233
KRP +I+W +DQ + ENP EI+ LG +WK ++
Sbjct: 6 KRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT-----EAEKWPFFQEAQK 60
Query: 234 LQVMAKERRESEAMKLLEEEHKQKTAMELLEQYLQFXXXXXXXXXXXXXXXXXXXXXHPV 293
LQ M +E+ + + E + K K P
Sbjct: 61 LQAMHREKYPNYKYRKGETKKKFKDP---------------------------NAPKRPP 93
Query: 294 TAYFLFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRP 335
+A+FLF SE R + ++ + +VAK GE W N + K+P
Sbjct: 94 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 137
>pdb|2LHJ|A Chain A, Nmr Structure Of The High Mobility Group Protein-Like
Protein Nhp1 From Babesia Bovis T2bo (Baboa.00841.A)
Length = 97
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 293 VTAYFLFSSERRAALLADN----KNVLEVAKITGEEWKNMTEEQKRP 335
+++Y F+ E+R ++A+N K+V + K+ G W +++E+K+P
Sbjct: 27 LSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKP 73
>pdb|2CO9|A Chain A, Solution Structure Of The Hmg_box Domain Of Thymus High
Mobility Group Box Protein Tox From Mouse
Length = 102
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 292 PVTAYFLFSSERRAALLADNKNVL--EVAKITGEEWKNMTEEQKR 334
PV+AY LF + +AA+ N N EV+KI W + EEQK+
Sbjct: 21 PVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQ 65
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 172 ERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVS 215
E ++P Y L+ +D K +NP A F E++ I+ + W +
Sbjct: 17 EPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLG 60
>pdb|2YQI|A Chain A, Solution Structure Of The Second Hmg-Box Domain From High
Mobility Group Protein B3
Length = 81
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 292 PVTAYFLFSSERRAALLADNKNV--LEVAKITGEEWKNMTEEQKRP 335
P + +FLF SE R + + N + +VAK GE W N+ + +K+P
Sbjct: 13 PPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQP 58
>pdb|1O4X|B Chain B, Ternary Complex Of The Dna Binding Domains Of The Oct1 And
Sox2 Transcription Factors With A 19mer Oligonucleotide
From The Hoxb1 Regulatory Element
Length = 88
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVS 215
KRP +++W + Q + +ENP+ EI+ LGA+WK +S
Sbjct: 9 KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLS 50
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 292 PVTAYFLFSSERRAALLADNKNVL--EVAKITGEEWKNMTEEQKRP 335
P+ A+ ++S +R + +N + E++K G EWK ++E +KRP
Sbjct: 11 PMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRP 56
>pdb|2LE4|A Chain A, Solution Structure Of The Hmg Box Dna-Binding Domain Of
Human Stem Cell Transcription Factor Sox2
Length = 81
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVS 215
KRP +++W + Q + +ENP+ EI+ LGA+WK +S
Sbjct: 5 KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLS 46
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 292 PVTAYFLFSSERRAALLADNKNVL--EVAKITGEEWKNMTEEQKRP 335
P+ A+ ++S +R + +N + E++K G EWK ++E +KRP
Sbjct: 7 PMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRP 52
>pdb|1GT0|D Chain D, Crystal Structure Of A PouHMGDNA TERNARY COMPLEX
Length = 80
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVS 215
KRP +++W + Q + +ENP+ EI+ LGA+WK +S
Sbjct: 4 KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLS 45
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 292 PVTAYFLFSSERRAALLADNKNVL--EVAKITGEEWKNMTEEQKRP 335
P+ A+ ++S +R + +N + E++K G EWK ++E +KRP
Sbjct: 6 PMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRP 51
>pdb|1J5N|A Chain A, Solution Structure Of The Non-Sequence-Specific Hmgb
Protein Nhp6a In Complex With Sry Dna
pdb|1LWM|A Chain A, Solution Structure Of The Sequence-Non-Specific Hmgb
Protein Nhp6a
Length = 93
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 293 VTAYFLFSSERRAALLADNKNVL--EVAKITGEEWKNMTEEQKRP 335
++AY F++E R + ++N ++ +V K GE+WK +T E+K+P
Sbjct: 25 LSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQP 69
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVS 215
KR Y+ + + + + ENP+ F ++ LG KWK ++
Sbjct: 22 KRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALT 63
>pdb|1CG7|A Chain A, Hmg Protein Nhp6a From Saccharomyces Cerevisiae
Length = 93
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 293 VTAYFLFSSERRAALLADNKNVL--EVAKITGEEWKNMTEEQKRP 335
++AY F++E R + ++N ++ +V K GE+WK +T E+K+P
Sbjct: 25 LSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQP 69
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVS 215
KR Y+ + + + + ENP+ F ++ LG KWK ++
Sbjct: 22 KRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALT 63
>pdb|2YRQ|A Chain A, Solution Structure Of The Tandem Hmg Box Domain From Human
High Mobility Group Protein B1
Length = 173
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 292 PVTAYFLFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRP 335
P +A+FLF SE R + ++ + +VAK GE W N + K+P
Sbjct: 105 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 150
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVS 215
KRP + L+C + + K E+P ++ LG W N +
Sbjct: 103 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 144
>pdb|1HSM|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
pdb|1HSN|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
Length = 79
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 292 PVTAYFLFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRP 335
P +A+FLF SE R + ++ + +VAK GE W N + K+P
Sbjct: 6 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 51
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVS 215
KRP + L+C + + K E+P ++ LG W N +
Sbjct: 4 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 45
>pdb|1NHM|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
pdb|1NHN|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna
Length = 81
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 292 PVTAYFLFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRP 335
P +A+FLF SE R + ++ + +VAK GE W N + K+P
Sbjct: 8 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 53
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVS 215
KRP + L+C + + K E+P ++ LG W N +
Sbjct: 6 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 47
>pdb|1HME|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
pdb|1HMF|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
Length = 77
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 292 PVTAYFLFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRP 335
P +A+FLF SE R + ++ + +VAK GE W N + K+P
Sbjct: 10 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 55
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVS 215
KRP + L+C + + K E+P ++ LG W N +
Sbjct: 8 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 49
>pdb|2YUL|A Chain A, Solution Structure Of The Hmg Box Of Human Transcription
Factor Sox-17
Length = 82
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 169 GCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVS 215
G + +RP +++W KD+ ++NP+ E++ +LG WK ++
Sbjct: 4 GSSGIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 50
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 292 PVTAYFLFSSERRAALLADNKNV--LEVAKITGEEWKNMTEEQKRP 335
P+ A+ +++ + R L N ++ E++K+ G+ WK +T +KRP
Sbjct: 11 PMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRP 56
>pdb|1J46|A Chain A, 3d Solution Nmr Structure Of The Wild Type Hmg-Box Domain
Of The Human Male Sex Determining Factor Sry Complexed
To Dna
Length = 85
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVS 215
KRP +I+W +DQ + ENP EI+ LG +WK ++
Sbjct: 6 KRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 292 PVTAYFLFSSERRAALLADNKNVL--EVAKITGEEWKNMTEEQKRP 335
P+ A+ ++S ++R + +N + E++K G +WK +TE +K P
Sbjct: 8 PMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWP 53
>pdb|1J47|A Chain A, 3d Solution Nmr Structure Of The M9i Mutant Of The Hmg-Box
Domain Of The Human Male Sex Determining Factor Sry
Complexed To Dna
Length = 85
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVS 215
KRP +I+W +DQ + ENP EI+ LG +WK ++
Sbjct: 6 KRPINAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 292 PVTAYFLFSSERRAALLADNKNVL--EVAKITGEEWKNMTEEQKRP 335
P+ A+ ++S ++R + +N + E++K G +WK +TE +K P
Sbjct: 8 PINAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWP 53
>pdb|1HRZ|A Chain A, The 3d Structure Of The Human Sry-Dna Complex Solved By
Multi-Dimensional Heteronuclear-Edited And-Filtered Nmr
pdb|1HRY|A Chain A, The 3d Structure Of The Human Sry-Dna Complex Solved By
Multid-Dimensional Heteronuclear-Edited And-Filtered Nmr
Length = 76
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVS 215
KRP +I+W +DQ + ENP EI+ LG +WK ++
Sbjct: 6 KRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 292 PVTAYFLFSSERRAALLADNKNVL--EVAKITGEEWKNMTEEQKRP 335
P+ A+ ++S ++R + +N + E++K G +WK +TE +K P
Sbjct: 8 PMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWP 53
>pdb|3F27|D Chain D, Structure Of Sox17 Bound To Dna
Length = 83
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVS 215
+RP +++W KD+ ++NP+ E++ +LG WK ++
Sbjct: 8 RRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 49
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 292 PVTAYFLFSSERRAALLADNKNV--LEVAKITGEEWKNMTEEQKRP 335
P+ A+ +++ + R L N ++ E++K+ G+ WK +T +KRP
Sbjct: 10 PMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRP 55
>pdb|4A3N|A Chain A, Crystal Structure Of Hmg-Box Of Human Sox17
Length = 71
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVS 215
+RP +++W KD+ ++NP+ E++ +LG WK ++
Sbjct: 4 RRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 45
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 292 PVTAYFLFSSERRAALLADNKNV--LEVAKITGEEWKNMTEEQKRP 335
P+ A+ +++ + R L N ++ E++K+ G+ WK +T +KRP
Sbjct: 6 PMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRP 51
>pdb|1I11|A Chain A, Solution Structure Of The Dna Binding Domain, Sox-5 Hmg
Box From Mouse
Length = 81
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 169 GCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVS 215
G KRP +++W KD+ + + P+ I+ ILG++WK ++
Sbjct: 1 GSPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMT 47
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 292 PVTAYFLFS-SERRAALLA--DNKNVLEVAKITGEEWKNMTEEQKRP 335
P+ A+ +++ ERR L A D N ++KI G WK MT +K+P
Sbjct: 8 PMNAFMVWAKDERRKILQAFPDMHNS-NISKILGSRWKAMTNLEKQP 53
>pdb|2CRJ|A Chain A, Solution Structure Of The Hmg Domain Of Mouse Hmg Domain
Protein Hmgx2
Length = 92
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 169 GCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNV 214
G + K P Y+ + ++ + + +P+ F EIT +LGA+W +
Sbjct: 4 GSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKL 49
>pdb|1WXL|A Chain A, Solution Structure Of The Hmg-Box Domain In The Ssrp1
Subunit Of Fact
Length = 73
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNV 214
KR + ++LW D K+ENP + EI G WK +
Sbjct: 5 KRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL 45
>pdb|1K99|A Chain A, Solution Structure Of The First Hmg Box In Human Upstream
Binding Factor
Length = 99
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 292 PVTAYFLFSSERRA--ALLADNKNVLEVAKITGEEWKNMTEEQK 333
P+T YF F E+RA A L + L++ KI +++K + E++K
Sbjct: 14 PLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKK 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.125 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,545,571
Number of Sequences: 62578
Number of extensions: 183065
Number of successful extensions: 419
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 69
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)