BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017939
(363 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SUP7|HMGB6_ARATH High mobility group B protein 6 OS=Arabidopsis thaliana GN=HMGB6
PE=2 SV=1
Length = 456
Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust.
Identities = 211/351 (60%), Positives = 263/351 (74%), Gaps = 44/351 (12%)
Query: 13 PSKKPR-SRRALKPKNSLANEAVVMAQTPSQSPIPNPPDAGLSKENHESLSQPKKAAAKG 71
P+KKPR SR+ALK KN L +TP P+P + KG
Sbjct: 9 PTKKPRNSRKALKQKNELV-------ETP-----PSP------------------VSVKG 38
Query: 72 KAKQATKKQDTSFDKDLQEMQEMLEKMKLEKEKTEELLKEKDEMLKMKEEELELQGKEQE 131
K+ + SF++DL EMQ MLEKMK+EK+KTEELLKEKDE+L+ KEEELE + EQE
Sbjct: 39 KSAK-------SFEQDLMEMQTMLEKMKIEKDKTEELLKEKDEILRKKEEELETRDAEQE 91
Query: 132 KLHMELKKLQKMKEFKPNMTL-----PIVQCLKDKEQDRKKKGCAERKRPSPPYILWCKD 186
KL +ELKKLQKMKEFKPNMT + Q ++K +KKK C E KRPS Y+LWCKD
Sbjct: 92 KLKVELKKLQKMKEFKPNMTFACGQSSLTQAEQEKANKKKKKDCPETKRPSSSYVLWCKD 151
Query: 187 QWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKERRESEA 246
QW E KKENPEA+FKE +NILGAKWK++SAE+KKPYEE+YQ EKEAYLQV+AKE+RE EA
Sbjct: 152 QWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYEERYQVEKEAYLQVIAKEKREKEA 211
Query: 247 MKLLEEEHKQKTAMELLEQYLQFKQEADKE-NKKPKKEKDPLKPKHPVTAYFLFSSERRA 305
MKLLE++ KQ+TAMELL+QYL F QEA+++ KK KKEKDPLKPKHPV+A+ ++++ERRA
Sbjct: 212 MKLLEDDQKQRTAMELLDQYLNFVQEAEQDNKKKNKKEKDPLKPKHPVSAFLVYANERRA 271
Query: 306 ALLADNKNVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKR 356
AL +NK+V+EVAKITGEEWKN+++++K PYE++AKKNKE Y + ME YKR
Sbjct: 272 ALREENKSVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETYLQAMEEYKR 322
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 16/197 (8%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
K P ++++ ++ ++EN E+ I G +WKN+S ++K PYE+ + KE Y
Sbjct: 256 KHPVSAFLVYANERRAALREEN--KSVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETY 313
Query: 234 LQVMAKERRESEAMKLLE--------EEHKQKTAMELL---EQYLQFKQEADKENKKPKK 282
LQ M + +R E L + + HKQ+ A+++L E+ ++ KK +
Sbjct: 314 LQAMEEYKRTKEEEALSQKKEEEELLKLHKQE-ALQMLKKKEKTDNLIKKEKATKKKKNE 372
Query: 283 EKDPLKPKHPVTAYFLFSSERRAALLAD--NKNVLEVAKITGEEWKNMTEEQKRPYEEIA 340
DP KPK P ++YFLFS + R L + N V + +WK ++EE+K+ Y A
Sbjct: 373 NVDPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKA 432
Query: 341 KKNKEKYNEEMEAYKRR 357
K E Y +E+EAY ++
Sbjct: 433 AKLMEAYKKEVEAYNKK 449
>sp|Q9T012|HMG13_ARATH High mobility group B protein 13 OS=Arabidopsis thaliana GN=HMGB13
PE=2 SV=1
Length = 446
Score = 353 bits (907), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 193/283 (68%), Positives = 232/283 (81%), Gaps = 12/283 (4%)
Query: 79 KQDTSFDKDLQEMQEMLEKMKLEKEKTEELLKEKDEMLKMKEEELELQGKEQEKLHMELK 138
K+ SF+KDL EMQ MLEKMK+EKEKTE+LLKEKDE+L+ KE EQEKL ELK
Sbjct: 38 KETKSFEKDLMEMQAMLEKMKIEKEKTEDLLKEKDEILRKKE-------VEQEKLKTELK 90
Query: 139 KLQKMKEFKPNMTLPIVQCL----KDKEQDRKKKGCAERKRPSPPYILWCKDQWNEAKKE 194
KLQKMKEFKPNMT Q L ++K+ +KKK CAE KRPS PYILWCKD WNE KK+
Sbjct: 91 KLQKMKEFKPNMTFAFSQSLAQTEEEKKGKKKKKDCAETKRPSTPYILWCKDNWNEVKKQ 150
Query: 195 NPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKERRESEAMKLLEEEH 254
NPEA+FKE +NILGAKWK +SAEEKKPYEEKYQA+KEAYLQV+ KE+RE EAMKLL++E
Sbjct: 151 NPEADFKETSNILGAKWKGISAEEKKPYEEKYQADKEAYLQVITKEKREREAMKLLDDEQ 210
Query: 255 KQKTAMELLEQYLQFKQEADKEN-KKPKKEKDPLKPKHPVTAYFLFSSERRAALLADNKN 313
KQKTAMELL+QYL F QEA+ +N KK KK KDPLKPK P++AY ++++ERRAAL +NK+
Sbjct: 211 KQKTAMELLDQYLHFVQEAEHDNKKKAKKIKDPLKPKQPISAYLIYANERRAALKGENKS 270
Query: 314 VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKR 356
V+EVAK+ GEEWKN++EE+K PY+++AKKNKE Y +EME YKR
Sbjct: 271 VIEVAKMAGEEWKNLSEEKKAPYDQMAKKNKEIYLQEMEGYKR 313
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 106/200 (53%), Gaps = 22/200 (11%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
K+P Y+++ ++ K EN E+ + G +WKN+S E+K PY++ + KE Y
Sbjct: 247 KQPISAYLIYANERRAALKGENKSV--IEVAKMAGEEWKNLSEEKKAPYDQMAKKNKEIY 304
Query: 234 LQVMAKERR--ESEAMKLLEEE------HKQKTAMELL------EQYLQFKQEADKENKK 279
LQ M +R E EAM +EE HKQ+ A++LL + ++ +E K NKK
Sbjct: 305 LQEMEGYKRTKEEEAMSQKKEEEEFMKLHKQE-ALQLLKKKEKTDNIIKKTKETAK-NKK 362
Query: 280 PKKEKDPLKPKHPVTAYFLFSSERRAALLADN---KNVLEVAKITGEEWKNMTEEQKRPY 336
+ DP KPK P ++YFLF + R ++L ++ N A I+ +W + EE+K+ Y
Sbjct: 363 KNENVDPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISL-KWMELGEEEKQVY 421
Query: 337 EEIAKKNKEKYNEEMEAYKR 356
A + E Y +E+E Y +
Sbjct: 422 NSKAAELMEAYKKEVEEYNK 441
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 23/128 (17%)
Query: 110 KEKDEMLKM-KEEELELQGKEQEKLHMELKKLQKMKEFKPNMTLPIVQCLKDKEQDRKKK 168
KE++E +K+ K+E L+L LKK +K T I++ K+ +++KK
Sbjct: 324 KEEEEFMKLHKQEALQL-----------LKKKEK--------TDNIIKKTKETAKNKKKN 364
Query: 169 GCAE---RKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEK 225
+ K+P+ Y L+CKD +E+P +T + KW + EEK+ Y K
Sbjct: 365 ENVDPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEKQVYNSK 424
Query: 226 YQAEKEAY 233
EAY
Sbjct: 425 AAELMEAY 432
>sp|P26586|HMGL_TRYBR High mobility group protein homolog TDP-1 OS=Trypanosoma brucei
rhodesiense PE=2 SV=1
Length = 271
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 32/175 (18%)
Query: 180 YILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAK 239
Y+L+ DQ E K +NP + I LG W + S + K+ Y +K + +K A+
Sbjct: 125 YLLFVADQREELKAKNPGMQNTAILQTLGKMWSDASDDVKEHYRKKAEEDK-------AR 177
Query: 240 ERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKE-NKKPKKEKDPLKPKHPVTAYFL 298
RRE + ++K++ KE + K +KD PK +T++
Sbjct: 178 FRREVD----------------------EYKRQGGKEYGRGGKIKKDSNAPKRAMTSFMF 215
Query: 299 FSSERRAALLADNKNVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEA 353
FSS+ R+ + +++E++K G WK + E+++ YEE+A+K+KE+Y EM A
Sbjct: 216 FSSDFRSK--HSDLSIVEMSKAAGAAWKELGPEERKVYEEMAEKDKERYKREMAA 268
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 279 KPKKEKDPLKPKHPVTAYFLFSSERRAALLADNKNVLEVA--KITGEEWKNMTEEQKRPY 336
KPKK D PK V++Y LF +++R L A N + A + G+ W + +++ K Y
Sbjct: 110 KPKKPAD--YPKPAVSSYLLFVADQREELKAKNPGMQNTAILQTLGKMWSDASDDVKEHY 167
Query: 337 EEIAKKNKEKYNEEMEAYKR 356
+ A+++K ++ E++ YKR
Sbjct: 168 RKKAEEDKARFRREVDEYKR 187
>sp|P07746|HMGT_ONCMY High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2
Length = 204
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 36/184 (19%)
Query: 180 YILWCKDQWNEAKKENPEAE--FKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
Y + + + E KK++PEA F E + +WK +SA+EK +E+ L +
Sbjct: 15 YAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFED---------LAKL 65
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
K R E E + Y+ K E K K+ KDP PK P +A+F
Sbjct: 66 DKVRYERE-----------------MRSYIPPKGE------KKKRFKDPNAPKRPSSAFF 102
Query: 298 LFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
+F ++ R + + + +VAK GE+W N+T E K PYE+ A + KEKY +++ AY+
Sbjct: 103 IFCADFRPQVKGETPGLSIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAYR 162
Query: 356 RRMK 359
+ K
Sbjct: 163 NKGK 166
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KRPS + ++C D + K E P ++ LG KW N++AE+K PYE+K KE Y
Sbjct: 95 KRPSSAFFIFCADFRPQVKGETPGLSIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKY 154
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 14/80 (17%)
Query: 284 KDPLKPKHPVTAYFLFSSERR---------AALLADNKNVLEVAKITGEEWKNMTEEQKR 334
KDP KP+ +++Y F RR A++ N E +K E WK M+ ++K
Sbjct: 3 KDPRKPRGKMSSYAYFVQTRREEHKKKHPEASV-----NFSEFSKKCSERWKTMSAKEKG 57
Query: 335 PYEEIAKKNKEKYNEEMEAY 354
+E++AK +K +Y EM +Y
Sbjct: 58 KFEDLAKLDKVRYEREMRSY 77
>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
Length = 149
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 284 KDPLKPKHPVTAYFLFSSERRAALLAD---NKNVLEVAKITGEEWKNMTEEQKRPYEEIA 340
KDP KPK P +A+F+F ++ R D NK+V V K GEEWK+++EE+K PY + A
Sbjct: 40 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRA 99
Query: 341 KKNKEKYNEEMEAYKRRM 358
K KE+Y ++AY +++
Sbjct: 100 LKKKEEYEITLQAYNKKL 117
>sp|Q6CC79|NHP6_YARLI Non-histone chromosomal protein 6 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=NHP6 PE=3 SV=1
Length = 103
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 285 DPLKPKHPVTAYFLFSSERRAALLADNKNVL--EVAKITGEEWKNMTEEQKRPYEEIAKK 342
DP PK ++AY F+++ R A+ ADN + +V K GE+WK +T+ +K PYEE A
Sbjct: 21 DPNAPKRALSAYMFFANDNRDAIRADNPGIAFGQVGKALGEKWKTLTDAEKVPYEEKATA 80
Query: 343 NKEKYNEEMEAYKRRMKEL 361
+K++Y +E AYK E
Sbjct: 81 DKKRYEDEKAAYKANAAEF 99
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KR Y+ + D + + +NP F ++ LG KWK ++ EK PYEEK A+K+ Y
Sbjct: 26 KRALSAYMFFANDNRDAIRADNPGIAFGQVGKALGEKWKTLTDAEKVPYEEKATADKKRY 85
>sp|P11633|NHP6B_YEAST Non-histone chromosomal protein 6B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6B PE=1 SV=3
Length = 99
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 10/92 (10%)
Query: 273 ADKENKKPK--------KEKDPLKPKHPVTAYFLFSSERRAALLADNKNVL--EVAKITG 322
A KE K+PK ++KDP PK ++AY F++E R + ++N +V +V +I G
Sbjct: 3 ATKEAKQPKEPKKRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENPDVTFGQVGRILG 62
Query: 323 EEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAY 354
E WK +T E+K+PYE A+ +K++Y E E Y
Sbjct: 63 ERWKALTAEEKQPYESKAQADKKRYESEKELY 94
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 161 KEQDRKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKK 220
K R+KK KR Y+ + + + + ENP+ F ++ ILG +WK ++AEEK+
Sbjct: 15 KRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENPDVTFGQVGRILGERWKALTAEEKQ 74
Query: 221 PYEEKYQAEKEAY 233
PYE K QA+K+ Y
Sbjct: 75 PYESKAQADKKRY 87
>sp|P63159|HMGB1_RAT High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1
SV=2
Length = 215
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 180 YILWCKDQWNEAKKENPEAE--FKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
Y + + E KK++P+A F E + +WK +SA+EK +E+ +A+K Y
Sbjct: 16 YAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY---- 71
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
RE ++ Y+ K E K K KDP PK P +A+F
Sbjct: 72 ---ERE-------------------MKTYIPPKGETKK------KFKDPNAPKRPPSAFF 103
Query: 298 LFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
LF SE R + ++ + +VAK GE W N + K+PYE+ A K KEKY +++ AY+
Sbjct: 104 LFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
Query: 356 RRMK 359
+ K
Sbjct: 164 AKGK 167
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KRP + L+C + + K E+P ++ LG W N +A++K+PYE+K KE Y
Sbjct: 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
Query: 234 LQVMAKER 241
+ +A R
Sbjct: 156 EKDIAAYR 163
>sp|A9RA84|HMGB1_PAPAN High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1
Length = 215
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 180 YILWCKDQWNEAKKENPEAE--FKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
Y + + E KK++P+A F E + +WK +SA+EK +E+ +A+K Y
Sbjct: 16 YAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY---- 71
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
RE ++ Y+ K E K K KDP PK P +A+F
Sbjct: 72 ---ERE-------------------MKTYIPPKGETKK------KFKDPNAPKRPPSAFF 103
Query: 298 LFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
LF SE R + ++ + +VAK GE W N + K+PYE+ A K KEKY +++ AY+
Sbjct: 104 LFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
Query: 356 RRMK 359
+ K
Sbjct: 164 AKGK 167
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KRP + L+C + + K E+P ++ LG W N +A++K+PYE+K KE Y
Sbjct: 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
Query: 234 LQVMAKER 241
+ +A R
Sbjct: 156 EKDIAAYR 163
>sp|P63158|HMGB1_MOUSE High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2
Length = 215
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 180 YILWCKDQWNEAKKENPEAE--FKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
Y + + E KK++P+A F E + +WK +SA+EK +E+ +A+K Y
Sbjct: 16 YAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY---- 71
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
RE ++ Y+ K E K K KDP PK P +A+F
Sbjct: 72 ---ERE-------------------MKTYIPPKGETKK------KFKDPNAPKRPPSAFF 103
Query: 298 LFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
LF SE R + ++ + +VAK GE W N + K+PYE+ A K KEKY +++ AY+
Sbjct: 104 LFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
Query: 356 RRMK 359
+ K
Sbjct: 164 AKGK 167
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KRP + L+C + + K E+P ++ LG W N +A++K+PYE+K KE Y
Sbjct: 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
Query: 234 LQVMAKER 241
+ +A R
Sbjct: 156 EKDIAAYR 163
>sp|Q4R844|HMGB1_MACFA High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2
SV=3
Length = 215
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 180 YILWCKDQWNEAKKENPEAE--FKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
Y + + E KK++P+A F E + +WK +SA+EK +E+ +A+K Y
Sbjct: 16 YAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY---- 71
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
RE ++ Y+ K E K K KDP PK P +A+F
Sbjct: 72 ---ERE-------------------MKTYIPPKGETKK------KFKDPNAPKRPPSAFF 103
Query: 298 LFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
LF SE R + ++ + +VAK GE W N + K+PYE+ A K KEKY +++ AY+
Sbjct: 104 LFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
Query: 356 RRMK 359
+ K
Sbjct: 164 AKGK 167
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KRP + L+C + + K E+P ++ LG W N +A++K+PYE+K KE Y
Sbjct: 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
Query: 234 LQVMAKER 241
+ +A R
Sbjct: 156 EKDIAAYR 163
>sp|P09429|HMGB1_HUMAN High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3
Length = 215
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 180 YILWCKDQWNEAKKENPEAE--FKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
Y + + E KK++P+A F E + +WK +SA+EK +E+ +A+K Y
Sbjct: 16 YAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY---- 71
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
RE ++ Y+ K E K K KDP PK P +A+F
Sbjct: 72 ---ERE-------------------MKTYIPPKGETKK------KFKDPNAPKRPPSAFF 103
Query: 298 LFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
LF SE R + ++ + +VAK GE W N + K+PYE+ A K KEKY +++ AY+
Sbjct: 104 LFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
Query: 356 RRMK 359
+ K
Sbjct: 164 AKGK 167
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KRP + L+C + + K E+P ++ LG W N +A++K+PYE+K KE Y
Sbjct: 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
Query: 234 LQVMAKER 241
+ +A R
Sbjct: 156 EKDIAAYR 163
>sp|Q08IE6|HMGB1_HORSE High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3
Length = 215
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 180 YILWCKDQWNEAKKENPEAE--FKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
Y + + E KK++P+A F E + +WK +SA+EK +E+ +A+K Y
Sbjct: 16 YAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY---- 71
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
RE ++ Y+ K E K K KDP PK P +A+F
Sbjct: 72 ---ERE-------------------MKTYIPPKGETKK------KFKDPNAPKRPPSAFF 103
Query: 298 LFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
LF SE R + ++ + +VAK GE W N + K+PYE+ A K KEKY +++ AY+
Sbjct: 104 LFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
Query: 356 RRMK 359
+ K
Sbjct: 164 AKGK 167
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KRP + L+C + + K E+P ++ LG W N +A++K+PYE+K KE Y
Sbjct: 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
Query: 234 LQVMAKER 241
+ +A R
Sbjct: 156 EKDIAAYR 163
>sp|Q6YKA4|HMGB1_CANFA High mobility group protein B1 OS=Canis familiaris GN=HMGB1 PE=2
SV=3
Length = 215
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 180 YILWCKDQWNEAKKENPEAE--FKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
Y + + E KK++P+A F E + +WK +SA+EK +E+ +A+K Y
Sbjct: 16 YAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY---- 71
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
RE ++ Y+ K E K K KDP PK P +A+F
Sbjct: 72 ---ERE-------------------MKTYIPPKGETKK------KFKDPNAPKRPPSAFF 103
Query: 298 LFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
LF SE R + ++ + +VAK GE W N + K+PYE+ A K KEKY +++ AY+
Sbjct: 104 LFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
Query: 356 RRMK 359
+ K
Sbjct: 164 AKGK 167
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KRP + L+C + + K E+P ++ LG W N +A++K+PYE+K KE Y
Sbjct: 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
Query: 234 LQVMAKER 241
+ +A R
Sbjct: 156 EKDIAAYR 163
>sp|B1MTB0|HMGB1_CALMO High mobility group protein B1 OS=Callicebus moloch GN=HMGB1 PE=3
SV=1
Length = 215
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 180 YILWCKDQWNEAKKENPEAE--FKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
Y + + E KK++P+A F E + +WK +SA+EK +E+ +A+K Y
Sbjct: 16 YAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY---- 71
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
RE ++ Y+ K E K K KDP PK P +A+F
Sbjct: 72 ---ERE-------------------MKTYIPPKGETKK------KFKDPNAPKRPPSAFF 103
Query: 298 LFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
LF SE R + ++ + +VAK GE W N + K+PYE+ A K KEKY +++ AY+
Sbjct: 104 LFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
Query: 356 RRMK 359
+ K
Sbjct: 164 AKGK 167
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KRP + L+C + + K E+P ++ LG W N +A++K+PYE+K KE Y
Sbjct: 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
Query: 234 LQVMAKER 241
+ +A R
Sbjct: 156 EKDIAAYR 163
>sp|B0CM99|HMGB1_CALJA High mobility group protein B1 OS=Callithrix jacchus GN=HMGB1 PE=3
SV=1
Length = 215
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 180 YILWCKDQWNEAKKENPEAE--FKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
Y + + E KK++P+A F E + +WK +SA+EK +E+ +A+K Y
Sbjct: 16 YAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY---- 71
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
RE ++ Y+ K E K K KDP PK P +A+F
Sbjct: 72 ---ERE-------------------MKTYIPPKGETKK------KFKDPNAPKRPPSAFF 103
Query: 298 LFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
LF SE R + ++ + +VAK GE W N + K+PYE+ A K KEKY +++ AY+
Sbjct: 104 LFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
Query: 356 RRMK 359
+ K
Sbjct: 164 AKGK 167
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KRP + L+C + + K E+P ++ LG W N +A++K+PYE+K KE Y
Sbjct: 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
Query: 234 LQVMAKER 241
+ +A R
Sbjct: 156 EKDIAAYR 163
>sp|P10103|HMGB1_BOVIN High mobility group protein B1 OS=Bos taurus GN=HMGB1 PE=1 SV=3
Length = 215
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 36/184 (19%)
Query: 180 YILWCKDQWNEAKKENPEAE--FKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
Y + + E KK++P+A F E + +WK +SA+EK +E+ +A+K Y
Sbjct: 16 YAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY---- 71
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
RE ++ Y+ K E K K KDP PK P +A+F
Sbjct: 72 ---ERE-------------------MKTYIPPKGETKK------KFKDPNAPKRPPSAFF 103
Query: 298 LFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
LF SE R + ++ + +VAK GE W N + K+PYE+ A K KEKY +++ AY+
Sbjct: 104 LFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
Query: 356 RRMK 359
+ K
Sbjct: 164 AKGK 167
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KRP + L+C + + K E+P ++ LG W N +A++K+PYE+K KE Y
Sbjct: 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
Query: 234 LQVMAKER 241
+ +A R
Sbjct: 156 EKDIAAYR 163
>sp|P12682|HMGB1_PIG High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3
Length = 215
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 36/184 (19%)
Query: 180 YILWCKDQWNEAKKENPEAE--FKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
Y + + E KK++P+A F E + +WK +SA+EK +E+ +A+K Y + M
Sbjct: 16 YAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREM 75
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
+ Y+ K E K K KDP PK P +A+F
Sbjct: 76 --------------------------KTYIPPKGETKK------KFKDPNAPKRPPSAFF 103
Query: 298 LFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
LF SE R + ++ + +VAK GE W N + K PYE+ A K KEKY +++ AY+
Sbjct: 104 LFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKYEKDIAAYR 163
Query: 356 RRMK 359
+ K
Sbjct: 164 AKGK 167
Score = 38.9 bits (89), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KRP + L+C + + K E+P ++ LG W N +A++K PYE+K KE Y
Sbjct: 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKY 155
Query: 234 LQVMAKER 241
+ +A R
Sbjct: 156 EKDIAAYR 163
>sp|O49595|HMGB1_ARATH High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1
PE=1 SV=1
Length = 178
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 281 KKEKDPLKPKHPVTAYFLFSSERRAALLADNKNV---LEVAKITGEEWKNMTEEQKRPYE 337
K +KDP KPK +A+F+F + R +N NV V K G++WK+M++ +K PYE
Sbjct: 45 KAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYE 104
Query: 338 EIAKKNKEKYNEEMEAYKRRMKE 360
E A K K +Y ++M+AY + ++E
Sbjct: 105 EKAAKRKAEYEKQMDAYNKNLEE 127
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAE-FKEITNILGAKWKNVSAEEKKPYEEKYQAEKEA 232
KR + ++ +D KKENP + + G KWK++S EK PYEEK K
Sbjct: 54 KRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAE 113
Query: 233 YLQVM 237
Y + M
Sbjct: 114 YEKQM 118
>sp|Q969G3|SMCE1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Homo sapiens
GN=SMARCE1 PE=1 SV=2
Length = 411
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 21/158 (13%)
Query: 179 PYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM- 237
PY+ + + W++ K NP+ + EI I+G W++++ EEK+ Y +Y+AEK Y + M
Sbjct: 72 PYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMK 131
Query: 238 ---------AKERRESEAMKLLEEEHKQKTA-MELLEQYLQFKQEADKENKKPKKEKDPL 287
A +S A LEEE +Q+ + ME E Y+ + D P D
Sbjct: 132 AYHNSPAYLAYINAKSRAEAALEEESRQRQSRMEKGEPYMSIQPAED-----PDDYDDGF 186
Query: 288 KPKHPVTAYF-----LFSSERRAALLADNKNVLEVAKI 320
KH TA F L S +++ D ++V+ A++
Sbjct: 187 SMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARM 224
>sp|O54941|SMCE1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Mus musculus
GN=Smarce1 PE=1 SV=1
Length = 411
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 21/158 (13%)
Query: 179 PYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM- 237
PY+ + + W++ K NP+ + EI I+G W++++ EEK+ Y +Y+AEK Y + M
Sbjct: 72 PYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMK 131
Query: 238 ---------AKERRESEAMKLLEEEHKQKTA-MELLEQYLQFKQEADKENKKPKKEKDPL 287
A +S A LEEE +Q+ + ME E Y+ + D P D
Sbjct: 132 AYHNSPAYLAYINAKSRAEAALEEESRQRQSRMEKGEPYMSIQPAED-----PDDYDDGF 186
Query: 288 KPKHPVTAYF-----LFSSERRAALLADNKNVLEVAKI 320
KH TA F L S +++ D ++V+ A++
Sbjct: 187 SMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARM 224
>sp|Q56A18|SMCE1_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily E member 1 OS=Rattus norvegicus
GN=Smarce1 PE=1 SV=1
Length = 376
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 21/158 (13%)
Query: 179 PYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM- 237
PY+ + + W++ K NP+ + EI I+G W++++ EEK+ Y +Y+AEK Y + M
Sbjct: 37 PYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMK 96
Query: 238 ---------AKERRESEAMKLLEEEHKQKTA-MELLEQYLQFKQEADKENKKPKKEKDPL 287
A +S A LEEE +Q+ + ME E Y+ + D P D
Sbjct: 97 AYHNSPAYLAYINAKSRAEAALEEESRQRQSRMEKGEPYMSIQPAED-----PDDYDDGF 151
Query: 288 KPKHPVTAYF-----LFSSERRAALLADNKNVLEVAKI 320
KH TA F L S +++ D ++V+ A++
Sbjct: 152 SMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARM 189
>sp|P40630|TFAM_MOUSE Transcription factor A, mitochondrial OS=Mus musculus GN=Tfam PE=1
SV=2
Length = 243
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 101/190 (53%), Gaps = 17/190 (8%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
K+P Y+ + +Q + K ++P+A+ E+ + A W+ + EKK YE ++AE +AY
Sbjct: 50 KKPMSSYLRFSTEQLPKFKAKHPDAKLSELVRKIAALWRELPEAEKKVYEADFKAEWKAY 109
Query: 234 LQVMAKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPL--KPKH 291
+ ++K + +Q T +L+ + +Q K+ K+ + L KPK
Sbjct: 110 KEAVSKYK-------------EQLTPSQLMGMEKEARQRRLKKKALVKRRELILLGKPKR 156
Query: 292 PVTAYFLFSSERRAALLADNKNVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEM 351
P +AY ++ SE A + + K+ E WKN++ E+K+ Y ++AK ++ +Y+ EM
Sbjct: 157 PRSAYNIYVSESFQE--AKDDSAQGKLKLVNEAWKNLSPEEKQAYIQLAKDDRIRYDNEM 214
Query: 352 EAYKRRMKEL 361
++++ +M E+
Sbjct: 215 KSWEEQMAEV 224
>sp|Q91ZW1|TFAM_RAT Transcription factor A, mitochondrial OS=Rattus norvegicus GN=Tfam
PE=2 SV=1
Length = 244
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 105/191 (54%), Gaps = 19/191 (9%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
K+P Y+ + +Q + K ++P+A+ E+ + A W+ + EKK YE ++AE + Y
Sbjct: 50 KKPMSSYLRFSTEQLPKFKAKHPDAKVSELIRKIAAMWRELPEAEKKVYEADFKAEWKVY 109
Query: 234 LQVMAKERRESEAMKL--LEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPL-KPK 290
+ ++K + + +L LE+E +QK L++ Q K ++E L KPK
Sbjct: 110 KEAVSKYKEQLTPSQLMGLEKEARQKR----LKKKAQIK----------RRELILLGKPK 155
Query: 291 HPVTAYFLFSSERRAALLADNKNVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEE 350
P +AY ++ SE A +++ K+ + WKN++ ++K+ Y ++AK ++ +Y+ E
Sbjct: 156 RPRSAYNIYVSESFQE--AKDESAQGKLKLVNQAWKNLSHDEKQAYIQLAKDDRIRYDNE 213
Query: 351 MEAYKRRMKEL 361
M++++ +M E+
Sbjct: 214 MKSWEEQMAEV 224
>sp|Q6CVH3|NHP6_KLULA Non-histone chromosomal protein 6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=NHP6 PE=3 SV=1
Length = 93
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 281 KKEKDPLKPKHPVTAYFLFSSERRAALLADNKNVL--EVAKITGEEWKNMTEEQKRPYEE 338
+K+KDP PK ++AY F++E R + A+N + +V +I GE+WK + E++K PYE
Sbjct: 10 RKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKAPYEA 69
Query: 339 IAKKNKEKYNEEMEAY 354
A+ +K++Y E E Y
Sbjct: 70 KAEADKKRYESEKELY 85
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 161 KEQDRKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKK 220
K+ RKKK KR Y+ + + + + ENP F ++ ILG KWK ++ +EK
Sbjct: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKA 65
Query: 221 PYEEK-------YQAEKEAYLQVMAK 239
PYE K Y++EKE Y+ A+
Sbjct: 66 PYEAKAEADKKRYESEKELYIATKAQ 91
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 38/184 (20%)
Query: 180 YILWCKDQWNEAKKENPEA--EFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
Y + + E KK+NPE F E + +WK +S++EK ++E +A+K Y
Sbjct: 16 YAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRY---- 71
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
+ E K + ++ +KDP PK P +A+F
Sbjct: 72 -------------DREMKDYGPAKGGKK-----------------KKDPNAPKRPPSAFF 101
Query: 298 LFSSERRAALLADNKNVL--EVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
LF SE R + + N + +VAK GE W N+++ +K+PY A K KEKY +++ YK
Sbjct: 102 LFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYK 161
Query: 356 RRMK 359
+ K
Sbjct: 162 SKGK 165
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KRP + L+C + + K NP ++ LG W N+S EK+PY K KE Y
Sbjct: 94 KRPPSAFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKY 153
>sp|P93047|HMGB3_ARATH High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3
PE=1 SV=1
Length = 141
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 284 KDPLKPKHPVTAYFLFSSERRAALLAD---NKNVLEVAKITGEEWKNMTEEQKRPYEEIA 340
KDP KPK P +A+F+F + R + NK+V V K GE+WK++++ +K PY A
Sbjct: 30 KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKA 89
Query: 341 KKNKEKYNEEMEAYKRRMKE 360
K K +Y + M+AY ++++E
Sbjct: 90 DKRKVEYEKNMKAYNKKLEE 109
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 38/184 (20%)
Query: 180 YILWCKDQWNEAKKENPEA--EFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
Y + + E KK+NPE F E + +WK +S++EK ++E +A+K Y
Sbjct: 16 YAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRY---- 71
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
+ E K + ++ +KDP PK P + +F
Sbjct: 72 -------------DREMKDYGPAKGGKK-----------------KKDPNAPKRPPSGFF 101
Query: 298 LFSSERRAALLADNKNVL--EVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
LF SE R + + N + +VAK GE W N+++ +K+PY A K KEKY +++ YK
Sbjct: 102 LFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADYK 161
Query: 356 RRMK 359
+ K
Sbjct: 162 SKGK 165
Score = 39.3 bits (90), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KRP + L+C + + K NP ++ LG W N+S EK+PY K KE Y
Sbjct: 94 KRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKY 153
>sp|P0C6E5|HMG3M_HUMAN Putative high mobility group protein B3-like protein OS=Homo
sapiens PE=5 SV=1
Length = 187
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 79/184 (42%), Gaps = 39/184 (21%)
Query: 180 YILWCKDQWNEAKKENPEA--EFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
Y + + E KK+NP+ F E + +WK +S +EK + E +A+K Y Q +
Sbjct: 16 YAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQEI 75
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
D K K+KDP PK P + +F
Sbjct: 76 K-----------------------------------DYGPAKGGKKKDPNAPKRPPSGFF 100
Query: 298 LFSSERRAALLADNKNV--LEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
LF SE + N + +VAK GE WKN+ + +K+PY A K KEKY +++ YK
Sbjct: 101 LFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYK 160
Query: 356 RRMK 359
+ K
Sbjct: 161 SKGK 164
Score = 38.9 bits (89), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPY-------EEKY 226
KRP + L+C + ++K NP ++ LG WKN++ EK+PY +EKY
Sbjct: 93 KRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKY 152
Query: 227 QAEKEAY 233
+ + Y
Sbjct: 153 EKDVAVY 159
>sp|Q5B995|NHP6_EMENI Non-histone chromosomal protein 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=nhp6 PE=3 SV=1
Length = 106
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Query: 281 KKEKDPLKPKHPVTAYFLFSSERRAALLADNKNV--LEVAKITGEEWKNMTEEQKRPYEE 338
+K+KDP PK ++AY F+++ R + +N + +V K+ GE+WK++++++++PYE+
Sbjct: 19 RKKKDPNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKMLGEKWKSLSDKERKPYED 78
Query: 339 IAKKNKEKYNEEMEAYK 355
A +K++Y +E AYK
Sbjct: 79 KAAADKKRYEDEKAAYK 95
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%)
Query: 165 RKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEE 224
RKKK KR Y+ + D ++ ++ENP F ++ +LG KWK++S +E+KPYE+
Sbjct: 19 RKKKDPNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKMLGEKWKSLSDKERKPYED 78
Query: 225 KYQAEKEAY 233
K A+K+ Y
Sbjct: 79 KAAADKKRY 87
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=nhp6
PE=3 SV=1
Length = 104
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 281 KKEKDPLKPKHPVTAYFLFSSERRAALLADNKNVL--EVAKITGEEWKNMTEEQKRPYEE 338
+K+KDP PK ++AY F++E R + +N + +V K+ GE WK +++ ++RPYEE
Sbjct: 17 RKKKDPNAPKRGLSAYMFFANENRDKVREENPGISFGQVGKMLGERWKALSDSERRPYEE 76
Query: 339 IAKKNKEKYNEEMEAY 354
A +K++Y +E +Y
Sbjct: 77 KAAADKKRYEDEKASY 92
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 158 LKDKEQDRKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAE 217
K K +RKKK KR Y+ + + ++ ++ENP F ++ +LG +WK +S
Sbjct: 10 TKTKRVERKKKDPNAPKRGLSAYMFFANENRDKVREENPGISFGQVGKMLGERWKALSDS 69
Query: 218 EKKPYEEKYQAEKEAY 233
E++PYEEK A+K+ Y
Sbjct: 70 ERRPYEEKAAADKKRY 85
>sp|Q00059|TFAM_HUMAN Transcription factor A, mitochondrial OS=Homo sapiens GN=TFAM PE=1
SV=1
Length = 246
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 103/189 (54%), Gaps = 15/189 (7%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
K+P Y+ + K+Q K +NP+A+ E+ + +W+ + +KK Y++ Y+AE + Y
Sbjct: 51 KKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVY 110
Query: 234 LQVMAKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPL-KPKHP 292
+ +++ + + +++ E E+++++L+ K KKE L KPK P
Sbjct: 111 KEEISRFKEQLTPSQIMSLEK------EIMDKHLKRKAMTK------KKELTLLGKPKRP 158
Query: 293 VTAYFLFSSERRAALLADNKNVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEME 352
+AY ++ +ER D+ E K E WKN+++ +K Y + AK+++ +Y+ EM+
Sbjct: 159 RSAYNVYVAERFQEAKGDSPQ--EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMK 216
Query: 353 AYKRRMKEL 361
+++ +M E+
Sbjct: 217 SWEEQMIEV 225
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 289 PKHPVTAYFLFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEK 346
PK PV++Y FS E+ A N + E+ + + W+ + + +K+ Y++ + +
Sbjct: 50 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 109
Query: 347 YNEEMEAYKRRM 358
Y EE+ +K ++
Sbjct: 110 YKEEISRFKEQL 121
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=nhp-6 PE=3 SV=1
Length = 103
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 284 KDPLKPKHPVTAYFLFSSERRAALLADNKNV--LEVAKITGEEWKNMTEEQKRPYEEIAK 341
KDP PK ++AY F++E+R + +N V +V KI GE WK ++++Q+ PYE A
Sbjct: 21 KDPNAPKRGLSAYMFFANEQRENVREENPGVSFGQVGKILGERWKALSDKQRAPYEAKAA 80
Query: 342 KNKEKYNEEMEAY 354
+K++Y +E +AY
Sbjct: 81 ADKKRYEDEKQAY 93
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 162 EQDRKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKP 221
E+ R KK KR Y+ + +Q ++ENP F ++ ILG +WK +S +++ P
Sbjct: 15 EKRRAKKDPNAPKRGLSAYMFFANEQRENVREENPGVSFGQVGKILGERWKALSDKQRAP 74
Query: 222 YEEKYQAEKEAY 233
YE K A+K+ Y
Sbjct: 75 YEAKAAADKKRY 86
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 38/184 (20%)
Query: 180 YILWCKDQWNEAKKENPEA--EFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
Y + + E KK+NPE F E + +WK +S +EK ++E +A+K Y
Sbjct: 16 YAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRY---- 71
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
+ E K + ++ +KDP PK P + +F
Sbjct: 72 -------------DREMKDYGPAKGGKK-----------------KKDPNAPKRPPSGFF 101
Query: 298 LFSSERRAALLADNKNV--LEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
LF SE R + + N + +VAK GE W N+++ +K+PY A K KEKY +++ YK
Sbjct: 102 LFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYK 161
Query: 356 RRMK 359
+ K
Sbjct: 162 SKGK 165
Score = 38.9 bits (89), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KRP + L+C + + K NP ++ LG W N+S EK+PY K KE Y
Sbjct: 94 KRPPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKY 153
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 38/184 (20%)
Query: 180 YILWCKDQWNEAKKENPEA--EFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
Y + + E KK+NPE F E + +WK +S +EK ++E +A+K Y
Sbjct: 16 YAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRY---- 71
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
+ E K + ++ +KDP PK P + +F
Sbjct: 72 -------------DREMKDYGPAKGGKK-----------------KKDPNAPKRPPSGFF 101
Query: 298 LFSSERRAALLADNKNV--LEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
LF SE R + + N + +VAK GE W N+ + +K+PY A K KEKY +++ YK
Sbjct: 102 LFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYK 161
Query: 356 RRMK 359
+ K
Sbjct: 162 SKGK 165
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KRP + L+C + + K NP ++ LG W N++ EK+PY K KE Y
Sbjct: 94 KRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKY 153
>sp|O49596|HMGB2_ARATH High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2
PE=1 SV=1
Length = 144
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 284 KDPLKPKHPVTAYFLFSSERRAALLAD---NKNVLEVAKITGEEWKNMTEEQKRPYEEIA 340
KDP KPK P +A+F+F + R + NK+V V K G++WK++++ +K PY A
Sbjct: 33 KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92
Query: 341 KKNKEKYNEEMEAYKRRMKE 360
+K K +Y + ++AY ++++E
Sbjct: 93 EKRKVEYEKNIKAYNKKLEE 112
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEA-EFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEA 232
KRP+ + ++ +D KKENP+ + G KWK++S EK PY K + K
Sbjct: 39 KRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVE 98
Query: 233 Y 233
Y
Sbjct: 99 Y 99
>sp|Q0II87|TFAM_BOVIN Transcription factor A, mitochondrial OS=Bos taurus GN=TFAM PE=2
SV=1
Length = 246
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 102/191 (53%), Gaps = 19/191 (9%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
K+P Y+ + K+Q K +NP+A+ E+ + W+ + EKK YE+ Y+A+ + Y
Sbjct: 51 KKPMTSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELPDSEKKIYEDAYRADWQVY 110
Query: 234 LQVMAK--ERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPL-KPK 290
+ + + E+ M LE+E QK + K++A + K+E L KPK
Sbjct: 111 KEEINRIQEQLTPSQMVSLEKEIMQK----------RLKKKALIK----KRELTMLGKPK 156
Query: 291 HPVTAYFLFSSERRAALLADNKNVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEE 350
P +AY +F +ER D + +++ I E WKN++ QK+ Y ++AK +K +Y E
Sbjct: 157 RPRSAYNIFIAERFQE-ARDGTSQVKLKAIN-ENWKNLSNSQKQVYIQLAKDDKIRYYNE 214
Query: 351 MEAYKRRMKEL 361
M++++ +M E+
Sbjct: 215 MKSWEEQMMEV 225
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 289 PKHPVTAYFLFSSERRAALLADNKNV--LEVAKITGEEWKNMTEEQKRPYEEIAKKNKEK 346
PK P+T+Y FS E+ A N + E+ K + W+ + + +K+ YE+ + + +
Sbjct: 50 PKKPMTSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELPDSEKKIYEDAYRADWQV 109
Query: 347 YNEEM 351
Y EE+
Sbjct: 110 YKEEI 114
>sp|P26584|HMGB2_CHICK High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2 SV=2
Length = 207
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 39/184 (21%)
Query: 180 YILWCKDQWNEAKKENPEAE--FKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
++ C++ E KK++P++ F E + +WK +S++EK +EE + +K Y + M
Sbjct: 19 FVQTCRE---EHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAKGDKARYDREM 75
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
K + +K K+KDP PK P +A+F
Sbjct: 76 --------------------------------KNYVPPKGEKKGKKKDPNAPKRPPSAFF 103
Query: 298 LFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
LF SE R + D+ + + AK GE W + K+PYE+ A K KEKY +++ AY+
Sbjct: 104 LFCSEHRPKIKNDHPGLSIGDTAKKLGEMWSEQLAKDKQPYEQKAAKLKEKYEKDIAAYR 163
Query: 356 RRMK 359
+ K
Sbjct: 164 AKSK 167
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KRP + L+C + + K ++P + LG W A++K+PYE+K KE Y
Sbjct: 96 KRPPSAFFLFCSEHRPKIKNDHPGLSIGDTAKKLGEMWSEQLAKDKQPYEQKAAKLKEKY 155
Query: 234 LQVMAKERRESEA 246
+ +A R +S++
Sbjct: 156 EKDIAAYRAKSKS 168
>sp|P40632|NHP1_BABBO High mobility group protein homolog NHP1 OS=Babesia bovis PE=1 SV=1
Length = 97
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 54/85 (63%), Gaps = 5/85 (5%)
Query: 278 KKPKK-EKDPLKPKHPVTAYFLFSSERRAALLADN----KNVLEVAKITGEEWKNMTEEQ 332
++P+K +KDP PK +++Y F+ E+R ++A+N K+V + K+ G W +++E+
Sbjct: 11 RRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEE 70
Query: 333 KRPYEEIAKKNKEKYNEEMEAYKRR 357
K+PYE ++ +++ +Y E Y +R
Sbjct: 71 KKPYERMSDEDRVRYEREKAEYAQR 95
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEA--EFKEITNILGAKWKNVSAEEKKPYEE------- 224
KR Y+ + K++ E ENPE + I ++GA W +S EEKKPYE
Sbjct: 24 KRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRV 83
Query: 225 KYQAEKEAYLQ 235
+Y+ EK Y Q
Sbjct: 84 RYEREKAEYAQ 94
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 285 DPLKPKHPVTAYFLFSSERRAALLADNKNVL--EVAKITGEEWKNMTEEQKRPYEEIAKK 342
DP PK P + +FLF SE R + + N + +VAK GE W N+++ +K+PY A K
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAK 147
Query: 343 NKEKYNEEMEAYKRRMK 359
KEKY +++ YK + K
Sbjct: 148 LKEKYEKDVADYKSKGK 164
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KRP + L+C + + K NP ++ LG W N+S EK+PY K KE Y
Sbjct: 93 KRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKY 152
>sp|Q4H2R2|SSRP1_CIOIN FACT complex subunit SSRP1 OS=Ciona intestinalis GN=SSRP1 PE=2 SV=1
Length = 704
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 281 KKEKDPLKPKHPVTAYFLFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRPYEE 338
+K+KDP PK P +AYFL+ +E R A+NK V E+ K+ G+EWK + ++K+ +E
Sbjct: 546 RKKKDPNAPKRPQSAYFLWLNENRGRFKAENKGISVTELTKLAGKEWKKIDPDEKQKFER 605
Query: 339 IAKKNKEKYNEEMEAYK 355
+ +K+K K++ M+ YK
Sbjct: 606 MYQKSKVKFDAAMKEYK 622
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%)
Query: 165 RKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEE 224
RKKK KRP Y LW + K EN E+T + G +WK + +EK+ +E
Sbjct: 546 RKKKDPNAPKRPQSAYFLWLNENRGRFKAENKGISVTELTKLAGKEWKKIDPDEKQKFER 605
Query: 225 KYQAEK 230
YQ K
Sbjct: 606 MYQKSK 611
>sp|P40644|HMGH_STRPU High mobility group protein 1 homolog OS=Strongylocentrotus
purpuratus GN=HMG1 PE=2 SV=1
Length = 200
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 180 YILWCKDQWNEAKKENPEA--EFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
Y + +D E K +P + F E + A+WK + + K + EK +K Y + M
Sbjct: 18 YAYFVQDSRAEHGKNHPNSPVRFAEFSKDCSARWKALEEKGKGVFHEKSMRDKVRYDREM 77
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
+K ++NK+ ++ KDP PK ++A+F
Sbjct: 78 Q-----------------------------SYKPPKGEKNKRRRRRKDPDAPKRNLSAFF 108
Query: 298 LFSSERRAAL--LADNKNVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
+FS E RAA+ + N +V ++AK W+ MT +K P+++ A K+KE+Y + M YK
Sbjct: 109 IFSGENRAAIKSVHPNWSVGDIAKELAVRWRAMTAGEKIPFDKGAAKDKERYIKAMAEYK 168
Query: 356 RRMKEL 361
+ K +
Sbjct: 169 AKAKPM 174
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 281 KKEKDPLKPKHPVTAYFLFSSERRAALLADNKN----VLEVAKITGEEWKNMTEEQKRPY 336
KK++D KP+ ++AY F + RA ++ N E +K WK + E+ K +
Sbjct: 3 KKDRDSSKPRGRMSAYAYFVQDSRAEHGKNHPNSPVRFAEFSKDCSARWKALEEKGKGVF 62
Query: 337 EEIAKKNKEKYNEEMEAYK 355
E + ++K +Y+ EM++YK
Sbjct: 63 HEKSMRDKVRYDREMQSYK 81
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 39/75 (52%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KR + ++ + K +P +I L +W+ ++A EK P+++ +KE Y
Sbjct: 101 KRNLSAFFIFSGENRAAIKSVHPNWSVGDIAKELAVRWRAMTAGEKIPFDKGAAKDKERY 160
Query: 234 LQVMAKERRESEAMK 248
++ MA+ + +++ MK
Sbjct: 161 IKAMAEYKAKAKPMK 175
>sp|Q09390|HMG12_CAEEL High mobility group protein 1.2 OS=Caenorhabditis elegans
GN=hmg-1.2 PE=2 SV=2
Length = 235
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 90/190 (47%), Gaps = 34/190 (17%)
Query: 177 SPPYILWCKDQWNEAKKENPE--AEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY- 233
+ PY + K + E KK+ P + EI+ KWK + +EK+ + E Q + E Y
Sbjct: 49 TSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQ 108
Query: 234 LQVMAKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPV 293
+V +AM+ K+ + +KDP PK +
Sbjct: 109 AEVSVAAYGGEDAMR-----------------------------KRKRAKKDPHAPKRAL 139
Query: 294 TAYFLFSSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEM 351
+A+F +S ++R + A + + V +VA+ G+ WK + +E K YE+ A+ +K++Y +EM
Sbjct: 140 SAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADEM 199
Query: 352 EAYKRRMKEL 361
YK M+++
Sbjct: 200 RNYKAEMQKM 209
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 165 RKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEE 224
R KK KR + + +D+ E + +P+ + ++ LG WK V E K YE+
Sbjct: 127 RAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQ 186
Query: 225 KYQAEKEAYLQVMAKERRESEAMKLLEE 252
K QA+K+ Y M + E + M ++
Sbjct: 187 KAQADKDRYADEMRNYKAEMQKMSGMDH 214
>sp|Q5D144|TFAM_PIG Transcription factor A, mitochondrial OS=Sus scrofa GN=TFAM PE=2
SV=1
Length = 246
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 99/189 (52%), Gaps = 15/189 (7%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
K+P Y+ + K+Q K +NP+A+ E+ + W+ + EKK YE+ Y+A+ + Y
Sbjct: 51 KKPMTSYVRFSKEQLPIFKAQNPDAKNSELIKKIAELWRELPDSEKKIYEDAYRADWQVY 110
Query: 234 LQVMAKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPL-KPKHP 292
E + ++E+ + L ++ +Q + K+ K+E L KPK P
Sbjct: 111 ----------KEEVNRIQEQLTPSQMVSLEKEIMQ--KRLKKKALIKKRELTMLGKPKRP 158
Query: 293 VTAYFLFSSERRAALLADNKNVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEME 352
+AY +F +ER D + +++ K E WKN++ QK+ Y ++A+ +K +Y EM+
Sbjct: 159 RSAYNIFIAERFQE-AKDGPSQVKL-KTINENWKNLSSSQKQVYIQLAEDDKVRYYNEMK 216
Query: 353 AYKRRMKEL 361
+++ +M E+
Sbjct: 217 SWEEQMVEV 225
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 289 PKHPVTAYFLFSSERRAALLADNKNV--LEVAKITGEEWKNMTEEQKRPYEEIAKKNKEK 346
PK P+T+Y FS E+ A N + E+ K E W+ + + +K+ YE+ + + +
Sbjct: 50 PKKPMTSYVRFSKEQLPIFKAQNPDAKNSELIKKIAELWRELPDSEKKIYEDAYRADWQV 109
Query: 347 YNEEM 351
Y EE+
Sbjct: 110 YKEEV 114
>sp|P07156|HMGB1_CRIGR High mobility group protein B1 (Fragment) OS=Cricetulus griseus
GN=HMGB1 PE=1 SV=1
Length = 180
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 34/162 (20%)
Query: 200 FKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKERRESEAMKLLEEEHKQKTA 259
F E + +WK +SA+EK +E+ +A+K Y E + KT
Sbjct: 3 FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY-------------------EREMKT- 42
Query: 260 MELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYFLFSSERRAALLADNKN--VLEV 317
Y+ K E KK KDP PK P +A+FLF SE R + ++ + +V
Sbjct: 43 ------YIPPKGETK------KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDV 90
Query: 318 AKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKRRMK 359
AK GE W N + K+PYE+ A K KEKY +++ AY+ + K
Sbjct: 91 AKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGK 132
Score = 38.5 bits (88), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KRP + L+C + + K E+P ++ LG W N +A++K+PYE+K KE Y
Sbjct: 61 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 120
Query: 234 LQVMAKER 241
+ +A R
Sbjct: 121 EKDIAAYR 128
Score = 35.4 bits (80), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 313 NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAY 354
N E +K E WK M+ ++K +E++AK +K +Y EM+ Y
Sbjct: 2 NFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 43
>sp|B2RPK0|HGB1A_HUMAN Putative high mobility group protein B1-like 1 OS=Homo sapiens
GN=HMGB1P1 PE=5 SV=1
Length = 211
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 35/182 (19%)
Query: 180 YILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAK 239
++ C+++ ++ K + F E +N +WK +SA+EK +E+ +A+K Y
Sbjct: 19 FVQTCREE-HKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMAKADKTHY------ 71
Query: 240 ERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYFLF 299
ER+ ++ Y+ K E K K KDP PK P +A+FLF
Sbjct: 72 ERQ--------------------MKTYIPPKGETKK------KFKDPNAPKRPPSAFFLF 105
Query: 300 SSERRAALLADNKN--VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKRR 357
SE + ++ + +VAK GE W N + K+P E+ A K KEKY +++ AY+ +
Sbjct: 106 CSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEKDIAAYQAK 165
Query: 358 MK 359
K
Sbjct: 166 GK 167
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKP 221
KRP + L+C + + K E+P ++ LG W N +A++K+P
Sbjct: 96 KRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 143
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 284 KDPLKPKHPVTAYFLFSSERRAALLADNKNV--LEVAKITGEEWKNMTEEQKRPYEEIAK 341
KDP PK ++AY F++E+R + +N + +V K+ GE WK + E+Q+ PYE A
Sbjct: 19 KDPNAPKRGLSAYMFFANEQRENVREENPGISFGQVGKLLGERWKALNEKQRAPYEAKAA 78
Query: 342 KNKEKYNEEMEAY 354
+K++Y +E +AY
Sbjct: 79 ADKKRYEDEKQAY 91
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KR Y+ + +Q ++ENP F ++ +LG +WK ++ +++ PYE K A+K+ Y
Sbjct: 25 KRGLSAYMFFANEQRENVREENPGISFGQVGKLLGERWKALNEKQRAPYEAKAAADKKRY 84
>sp|Q8WW32|HMGB4_HUMAN High mobility group protein B4 OS=Homo sapiens GN=HMGB4 PE=2 SV=2
Length = 186
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 36/164 (21%)
Query: 195 NPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKERRESEAMKLLEEEH 254
N FKE + KW+++S EK YE L + K R + E M + +
Sbjct: 33 NTYVGFKEFSRKCSEKWRSISKHEKAKYEA---------LAKLDKARYQEEMMNYVGKRK 83
Query: 255 KQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYFLFSSERRAALLADNKN- 313
K++ +DP +P+ P +++ LF + A L +N N
Sbjct: 84 KRRK-------------------------RDPQEPRRPPSSFLLFCQDHYAQLKRENPNW 118
Query: 314 -VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKR 356
V++VAK TG+ W T+ +K PYE+ + KY EE+E Y++
Sbjct: 119 SVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYRK 162
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
+RP ++L+C+D + + K+ENP ++ G W + EK PYE++ + Y
Sbjct: 94 RRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKY 153
Query: 234 LQVMAKERRESEAMK 248
+ + R++ A K
Sbjct: 154 FEELELYRKQCNARK 168
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 287 LKPKHPVTAYFLFSSERRAALLADNKNVL----EVAKITGEEWKNMTEEQKRPYEEIAKK 342
LKPK V++Y F R N E ++ E+W+++++ +K YE +AK
Sbjct: 7 LKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKL 66
Query: 343 NKEKYNEEMEAY 354
+K +Y EEM Y
Sbjct: 67 DKARYQEEMMNY 78
>sp|P26585|HMGL_SOYBN HMG1/2-like protein OS=Glycine max PE=2 SV=1
Length = 152
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 273 ADKENKKPKKEKDPLKPKHPVTAYFLFSSERRAAL---LADNKNVLEVAKITGEEWKNMT 329
A K K K KDP KPK P +A+F+F E R +NK V V K G +WK M+
Sbjct: 28 ARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMS 87
Query: 330 EEQKRPYEEIAKKNKEKYNEEMEAYKRRMKE 360
+ +K PY ++K K +Y + M AY ++ E
Sbjct: 88 DAEKAPYVAKSEKRKVEYEKNMRAYNKKQAE 118
>sp|Q24537|HMG2_DROME High mobility group protein DSP1 OS=Drosophila melanogaster GN=Dsp1
PE=2 SV=1
Length = 393
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 33/180 (18%)
Query: 180 YILWCKDQWNEAKKENPE--AEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237
++ C++ E KK++P+ F E + +WK + +EKK + E AEK+
Sbjct: 189 FVQTCRE---EHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHE--MAEKD------ 237
Query: 238 AKERRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYF 297
K+R E+E ++ Y+ K KK K+ KDP PK ++A+F
Sbjct: 238 -KQRYEAE-----------------MQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFF 279
Query: 298 LFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355
F ++ R + A N V ++AK G +W ++ E K+ YE +A+++K +Y EM YK
Sbjct: 280 WFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYK 339
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 174 KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAY 233
KR + +C D+ N+ K NPE +I LG KW +V E K+ YE + +K Y
Sbjct: 272 KRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAERDKARY 331
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.122 0.330
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,562,892
Number of Sequences: 539616
Number of extensions: 6114256
Number of successful extensions: 70616
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 3299
Number of HSP's that attempted gapping in prelim test: 41099
Number of HSP's gapped (non-prelim): 17724
length of query: 363
length of database: 191,569,459
effective HSP length: 119
effective length of query: 244
effective length of database: 127,355,155
effective search space: 31074657820
effective search space used: 31074657820
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 62 (28.5 bits)