Query 017939
Match_columns 363
No_of_seqs 271 out of 1995
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 07:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yrq_A High mobility group pro 100.0 1.2E-36 4E-41 272.0 16.3 163 163-357 6-172 (173)
2 3tq6_A Transcription factor A, 100.0 1.2E-36 4E-41 281.4 11.6 180 169-361 6-185 (214)
3 3tmm_A Transcription factor A, 100.0 1.1E-36 3.7E-41 285.8 9.9 183 166-361 35-217 (238)
4 2gzk_A Sex-determining region 100.0 1.5E-34 5E-39 254.8 14.9 156 169-356 1-158 (159)
5 2eqz_A High mobility group pro 99.8 3.5E-20 1.2E-24 147.2 9.5 79 163-241 6-86 (86)
6 2co9_A Thymus high mobility gr 99.8 5.7E-20 1.9E-24 150.8 9.7 81 163-243 8-88 (102)
7 1k99_A Upstream binding factor 99.8 2.4E-20 8.1E-25 152.4 7.3 80 164-243 2-81 (99)
8 1hme_A High mobility group pro 99.8 5.6E-20 1.9E-24 142.7 7.5 75 167-241 1-75 (77)
9 2crj_A SWI/SNF-related matrix- 99.8 3.2E-19 1.1E-23 143.5 10.1 77 167-243 2-78 (92)
10 2gzk_A Sex-determining region 99.8 7.8E-19 2.7E-23 154.2 12.3 95 138-242 64-158 (159)
11 1wgf_A Upstream binding factor 99.8 7.5E-20 2.6E-24 146.7 3.4 76 163-238 11-86 (90)
12 3nm9_A HMG-D, high mobility gr 99.8 8.3E-19 2.8E-23 135.1 9.1 71 170-242 1-71 (73)
13 2cs1_A PMS1 protein homolog 1; 99.8 6.4E-19 2.2E-23 141.7 8.5 76 168-243 3-78 (92)
14 2lhj_A High mobility group pro 99.8 1.2E-19 4.1E-24 147.4 4.3 80 163-242 13-94 (97)
15 1aab_A High mobility group pro 99.8 1.3E-19 4.3E-24 142.9 4.2 76 167-242 2-79 (83)
16 2yrq_A High mobility group pro 99.8 1.6E-18 5.3E-23 154.5 11.7 96 137-242 76-171 (173)
17 2e6o_A HMG box-containing prot 99.8 3.6E-19 1.2E-23 141.8 6.2 76 165-240 10-85 (87)
18 1hry_A Human SRY; DNA, DNA-bin 99.8 3.6E-19 1.2E-23 137.8 5.8 73 169-241 1-73 (76)
19 1cg7_A Protein (NON histone pr 99.8 1.6E-19 5.6E-24 145.6 3.3 80 163-242 11-90 (93)
20 2eqz_A High mobility group pro 99.8 1.8E-18 6.3E-23 137.3 9.2 79 277-355 4-86 (86)
21 2co9_A Thymus high mobility gr 99.8 3.8E-18 1.3E-22 139.8 10.4 82 279-360 8-91 (102)
22 1ckt_A High mobility group 1 p 99.7 1.6E-18 5.5E-23 132.4 7.2 69 172-240 1-71 (71)
23 1j46_A SRY, sex-determining re 99.7 1.9E-18 6.4E-23 137.0 7.7 73 169-241 1-73 (85)
24 1wxl_A Single-strand recogniti 99.7 1.7E-18 5.7E-23 133.4 7.0 71 170-242 1-71 (73)
25 1k99_A Upstream binding factor 99.7 1.4E-18 4.8E-23 141.8 6.1 82 280-361 2-85 (99)
26 1wz6_A HMG-box transcription f 99.7 1.3E-18 4.5E-23 136.8 4.1 74 168-241 3-76 (82)
27 3f27_D Transcription factor SO 99.7 3.9E-18 1.3E-22 134.1 6.6 73 169-241 3-75 (83)
28 4a3n_A Transcription factor SO 99.7 2.6E-18 9.1E-23 130.9 5.4 70 172-241 2-71 (71)
29 4euw_A Transcription factor SO 99.7 5.1E-18 1.7E-22 140.1 7.5 77 165-241 22-98 (106)
30 1gt0_D Transcription factor SO 99.7 5.2E-18 1.8E-22 132.6 6.9 71 171-241 1-71 (80)
31 1hme_A High mobility group pro 99.7 3.9E-18 1.3E-22 132.3 5.6 73 284-356 2-76 (77)
32 1v64_A Nucleolar transcription 99.7 1.2E-17 4.2E-22 138.4 8.3 82 278-361 6-88 (108)
33 2cs1_A PMS1 protein homolog 1; 99.7 7.5E-18 2.6E-22 135.5 6.7 78 284-361 3-82 (92)
34 2crj_A SWI/SNF-related matrix- 99.7 1.7E-17 5.9E-22 133.3 8.3 76 283-358 2-79 (92)
35 1cg7_A Protein (NON histone pr 99.7 2E-18 7E-23 139.1 2.8 83 276-358 8-92 (93)
36 1v64_A Nucleolar transcription 99.7 1.7E-17 6E-22 137.5 8.0 77 163-243 7-84 (108)
37 2lhj_A High mobility group pro 99.7 3.9E-18 1.3E-22 138.4 3.9 82 277-358 11-96 (97)
38 3u2b_C Transcription factor SO 99.7 1E-17 3.6E-22 130.4 6.1 71 171-241 1-71 (79)
39 1i11_A Transcription factor SO 99.7 8.3E-18 2.8E-22 131.9 5.3 72 170-241 2-73 (81)
40 2lef_A LEF-1 HMG, protein (lym 99.7 2E-17 6.8E-22 131.2 7.4 70 172-241 2-71 (86)
41 1l8y_A Upstream binding factor 99.7 2.7E-17 9.2E-22 132.2 7.8 72 171-243 3-74 (91)
42 3fgh_A Transcription factor A, 99.7 2.2E-17 7.4E-22 124.9 6.4 66 171-240 1-66 (67)
43 1aab_A High mobility group pro 99.7 5.8E-18 2E-22 133.3 2.8 75 284-358 3-81 (83)
44 3nm9_A HMG-D, high mobility gr 99.7 4.5E-17 1.5E-21 125.3 7.5 70 286-357 1-72 (73)
45 3fgh_A Transcription factor A, 99.7 3E-17 1E-21 124.2 6.1 67 287-355 1-67 (67)
46 1l8y_A Upstream binding factor 99.7 3.8E-17 1.3E-21 131.3 6.6 76 287-362 3-79 (91)
47 1hry_A Human SRY; DNA, DNA-bin 99.7 1.9E-17 6.6E-22 128.0 4.4 72 285-356 1-74 (76)
48 2e6o_A HMG box-containing prot 99.7 2.5E-17 8.4E-22 131.1 4.5 75 281-355 10-86 (87)
49 2d7l_A WD repeat and HMG-box D 99.7 6.5E-17 2.2E-21 127.5 6.0 61 169-229 2-63 (81)
50 1v63_A Nucleolar transcription 99.7 1.6E-16 5.3E-21 130.2 8.2 77 285-361 5-81 (101)
51 1ckt_A High mobility group 1 p 99.7 6E-17 2E-21 123.6 5.3 67 288-354 1-71 (71)
52 1v63_A Nucleolar transcription 99.7 2.6E-16 9E-21 128.8 9.3 74 168-243 4-77 (101)
53 1wgf_A Upstream binding factor 99.7 2.5E-17 8.5E-22 132.0 3.0 75 278-352 10-86 (90)
54 2yuk_A Myeloid/lymphoid or mix 99.7 1.1E-17 3.9E-22 134.2 0.7 69 163-235 13-83 (90)
55 4a3n_A Transcription factor SO 99.7 5.3E-17 1.8E-21 123.7 4.4 69 287-355 1-71 (71)
56 1wxl_A Single-strand recogniti 99.6 7.7E-17 2.6E-21 124.0 4.5 70 286-357 1-72 (73)
57 1j46_A SRY, sex-determining re 99.6 1.6E-16 5.5E-21 125.8 6.2 72 286-357 2-75 (85)
58 1wz6_A HMG-box transcription f 99.6 4.9E-17 1.7E-21 127.8 2.2 74 284-357 3-78 (82)
59 1gt0_D Transcription factor SO 99.6 2.8E-16 9.7E-21 122.7 5.8 71 287-357 1-73 (80)
60 3f27_D Transcription factor SO 99.6 2E-16 6.7E-21 124.4 4.5 72 285-356 3-76 (83)
61 2lef_A LEF-1 HMG, protein (lym 99.6 3.6E-16 1.2E-20 123.9 6.0 70 287-356 1-72 (86)
62 2cto_A Novel protein; high mob 99.6 1.8E-16 6.2E-21 128.1 4.3 69 167-237 5-76 (93)
63 4euw_A Transcription factor SO 99.6 2.8E-16 9.6E-21 129.7 5.3 76 282-357 23-100 (106)
64 3u2b_C Transcription factor SO 99.6 2.4E-16 8.3E-21 122.6 4.5 70 287-356 1-72 (79)
65 1i11_A Transcription factor SO 99.6 3.6E-16 1.2E-20 122.5 3.9 72 286-357 2-75 (81)
66 3tq6_A Transcription factor A, 99.6 1.1E-14 3.8E-19 134.2 10.9 75 165-243 107-181 (214)
67 3tmm_A Transcription factor A, 99.6 1.1E-14 3.7E-19 136.3 10.4 75 165-243 139-213 (238)
68 2cto_A Novel protein; high mob 99.5 2.8E-15 9.4E-20 121.1 3.6 69 283-351 5-76 (93)
69 2d7l_A WD repeat and HMG-box D 99.5 1.7E-14 5.9E-19 113.6 4.4 59 285-343 2-63 (81)
70 2yuk_A Myeloid/lymphoid or mix 99.5 4.1E-15 1.4E-19 119.4 -0.1 68 283-350 17-84 (90)
71 3nmd_A CGMP dependent protein 86.6 1.7 5.8E-05 32.9 6.1 36 108-143 34-69 (72)
72 1zxa_A CGMP-dependent protein 64.2 7.9 0.00027 28.8 4.1 42 103-144 14-55 (67)
73 3qh9_A Liprin-beta-2; coiled-c 51.2 80 0.0027 24.1 7.8 56 83-138 23-78 (81)
74 1ic2_A Tropomyosin alpha chain 47.3 49 0.0017 24.8 6.3 44 90-133 3-46 (81)
75 3u1c_A Tropomyosin alpha-1 cha 46.9 83 0.0028 24.7 7.8 52 88-139 4-55 (101)
76 2qgu_A Probable signal peptide 46.4 21 0.00072 31.8 4.7 47 196-242 70-118 (211)
77 3u59_A Tropomyosin beta chain; 42.0 1.1E+02 0.0038 23.8 7.8 51 88-138 4-54 (101)
78 3nmd_A CGMP dependent protein 37.8 65 0.0022 24.1 5.4 37 105-141 24-60 (72)
79 2r2v_A GCN4 leucine zipper; co 36.9 50 0.0017 21.2 3.9 29 84-112 6-34 (34)
80 3etw_A Adhesin A; antiparallel 32.8 1.9E+02 0.0065 23.6 8.0 63 80-145 3-65 (119)
81 2xze_Q Charged multivesicular 32.2 29 0.00099 23.1 2.3 14 86-99 26-39 (40)
82 2qgu_A Probable signal peptide 31.4 25 0.00085 31.3 2.6 48 311-358 71-120 (211)
83 2v4h_A NF-kappa-B essential mo 28.0 2.4E+02 0.0081 22.7 7.6 58 83-141 35-103 (110)
84 2wq1_A General control protein 25.4 91 0.0031 19.8 3.6 27 84-110 5-31 (33)
85 3twe_A Alpha4H; unknown functi 24.7 53 0.0018 19.4 2.3 14 129-142 9-22 (27)
86 1j1d_B Troponin T, TNT; THIN f 23.0 1.9E+02 0.0065 23.1 6.2 58 299-358 29-86 (106)
87 3u1c_A Tropomyosin alpha-1 cha 22.4 2.8E+02 0.0094 21.6 8.4 53 82-134 40-92 (101)
88 1lq7_A Alpha3W; three helix bu 20.9 1.4E+02 0.0049 21.0 4.4 10 130-139 57-66 (67)
No 1
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=272.00 Aligned_cols=163 Identities=33% Similarity=0.556 Sum_probs=149.2
Q ss_pred hhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCC--CCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHH
Q 017939 163 QDRKKKGCAERKRPSPPYILWCKDQWNEAKKENPE--AEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKE 240 (363)
Q Consensus 163 ~~kk~k~p~~PKrP~say~lF~~e~r~~ik~e~P~--~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~y 240 (363)
+++.++||++||||+|||+|||.++|..|+.+||+ +++.||+++||++|++||+++|.+|.+.|..++++|..+|..|
T Consensus 6 ~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 85 (173)
T 2yrq_A 6 SGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 85 (173)
T ss_dssp CSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34567899999999999999999999999999999 5899999999999999999999999999999999999999877
Q ss_pred hhhHHHHHhhHHHHHHhhHHHHHHHHhhhhHhhhhhcCCCCCCCCCCCCCCCccccccccHHHHHHHHhhCC--ChHHHH
Q 017939 241 RRESEAMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYFLFSSERRAALLADNK--NVLEVA 318 (363)
Q Consensus 241 k~e~e~~kll~~eq~~k~~~e~~~~~~~~~~~~~~k~kkkKk~kd~~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~ 318 (363)
... .+.++++.+|++.||||+|||++||+++|..+...+| ++.+|+
T Consensus 86 ~~~--------------------------------~~~~kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~ 133 (173)
T 2yrq_A 86 IPP--------------------------------KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVA 133 (173)
T ss_dssp CCC--------------------------------CCCSSCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred hhh--------------------------------hhhhcccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 542 1123345679999999999999999999999998887 689999
Q ss_pred HHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017939 319 KITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKRR 357 (363)
Q Consensus 319 k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~~ 357 (363)
+.||.+|++||+++|++|.++|+.++++|..+|++|+.+
T Consensus 134 k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~k 172 (173)
T 2yrq_A 134 KKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 172 (173)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999865
No 2
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=281.36 Aligned_cols=180 Identities=27% Similarity=0.468 Sum_probs=153.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 017939 169 GCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKERRESEAMK 248 (363)
Q Consensus 169 ~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk~e~e~~k 248 (363)
.|++||||+|||+|||+++|..|+.+||+++++||+++||++|++||+++|.+|++.|..++++|..+|..|...
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~----- 80 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ----- 80 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhccc-----
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred hhHHHHHHhhHHHHHHHHhhhhHhhhhhcCCCCCCCCCCCCCCCccccccccHHHHHHHHhhCCChHHHHHHHHHHhccC
Q 017939 249 LLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYFLFSSERRAALLADNKNVLEVAKITGEEWKNM 328 (363)
Q Consensus 249 ll~~eq~~k~~~e~~~~~~~~~~~~~~k~kkkKk~kd~~~PKrP~SAY~lF~~e~r~~~~~e~p~~~ei~k~l~~~Wk~L 328 (363)
+++.+......++.+..+..+. .++++..+|++.||||+|||++||+++|..+...+| .+|++.||++|++|
T Consensus 81 -~tp~q~~~~~~~~~~~~~krk~-----~kkkk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p--~ei~k~lg~~Wk~l 152 (214)
T 3tq6_A 81 -LTPSQIMSLEKEIMDKHLKRKA-----MTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP--QEKLKTVKENWKNL 152 (214)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSH--HHHHHHHHHHHHTC
T ss_pred -CCHHHHHHHHHHHHHHHhhhcc-----hhhhhhhccccCcccccchhhhhHHHHHHhhccCCH--HHHHHHHHHHHHcC
Confidence 3445544333334333332211 111234578999999999999999999998765544 59999999999999
Q ss_pred ChHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 017939 329 TEEQKRPYEEIAKKNKEKYNEEMEAYKRRMKEL 361 (363)
Q Consensus 329 s~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~~~~E~ 361 (363)
|+++|++|.++|+.++++|..+|.+|..++++.
T Consensus 153 s~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~~~~~ 185 (214)
T 3tq6_A 153 SDSEKELYIQHAKEDETRYHNEMKSWEEQMIEV 185 (214)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999998764
No 3
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=285.75 Aligned_cols=183 Identities=26% Similarity=0.457 Sum_probs=156.1
Q ss_pred hccCCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHhhhHH
Q 017939 166 KKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKERRESE 245 (363)
Q Consensus 166 k~k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk~e~e 245 (363)
..++|++||+|+|||+|||+++|..|+.+||++++.||+++||++|++||++||.+|++.|..++++|..+|..|...
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~-- 112 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ-- 112 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 356889999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred HHHhhHHHHHHhhHHHHHHHHhhhhHhhhhhcCCCCCCCCCCCCCCCccccccccHHHHHHHHhhCCChHHHHHHHHHHh
Q 017939 246 AMKLLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYFLFSSERRAALLADNKNVLEVAKITGEEW 325 (363)
Q Consensus 246 ~~kll~~eq~~k~~~e~~~~~~~~~~~~~~k~kkkKk~kd~~~PKrP~SAY~lF~~e~r~~~~~e~p~~~ei~k~l~~~W 325 (363)
+++.+......++.+.++..+. .++++..+|++.||||+|||++||+++|..+...+| .+|++.||++|
T Consensus 113 ----~~p~~~~~~~~~~~~k~~krk~-----~~kkk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p--~ei~k~lg~~W 181 (238)
T 3tmm_A 113 ----LTPSQIMSLEKEIMDKHLKRKA-----MTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP--QEKLKTVKENW 181 (238)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH--HHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHhhhhhhhhc-----ccchhhhcccCCCCCCCcHHHHHHHHHHHHHhccCH--HHHHHHHHHHH
Confidence 3445544333344333333211 111234578999999999999999999998765554 59999999999
Q ss_pred ccCChHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 017939 326 KNMTEEQKRPYEEIAKKNKEKYNEEMEAYKRRMKEL 361 (363)
Q Consensus 326 k~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~~~~E~ 361 (363)
++||+++|++|.++|+.++++|..+|.+|..++++.
T Consensus 182 k~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k~~~~ 217 (238)
T 3tmm_A 182 KNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEV 217 (238)
T ss_dssp HTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999998764
No 4
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=100.00 E-value=1.5e-34 Score=254.76 Aligned_cols=156 Identities=35% Similarity=0.577 Sum_probs=143.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 017939 169 GCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKERRESEAMK 248 (363)
Q Consensus 169 ~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk~e~e~~k 248 (363)
+++.||||+++||+|+.+.+..|..+||++++.||+++||++|++||+++|.+|.+.|..+++.|..++..|...
T Consensus 1 g~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~----- 75 (159)
T 2gzk_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR----- 75 (159)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCC-----
T ss_pred CcCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccc-----
Confidence 467899999999999999999999999999999999999999999999999999999999999999988766421
Q ss_pred hhHHHHHHhhHHHHHHHHhhhhHhhhhhcCCCCCCCCCCCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhc
Q 017939 249 LLEEEHKQKTAMELLEQYLQFKQEADKENKKPKKEKDPLKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWK 326 (363)
Q Consensus 249 ll~~eq~~k~~~e~~~~~~~~~~~~~~k~kkkKk~kd~~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk 326 (363)
.+++++..+|++.||+|+|||++||+++|..+..+|| ++.+|++.||++|+
T Consensus 76 ---------------------------k~~~kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk 128 (159)
T 2gzk_A 76 ---------------------------KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWN 128 (159)
T ss_dssp ---------------------------CCCCGGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHH
T ss_pred ---------------------------cccccccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 1233445789999999999999999999999998887 68999999999999
Q ss_pred cCChHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 017939 327 NMTEEQKRPYEEIAKKNKEKYNEEMEAYKR 356 (363)
Q Consensus 327 ~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~ 356 (363)
+||+++|++|.+.|..++++|..+|.+|.+
T Consensus 129 ~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 129 NTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999985
No 5
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=3.5e-20 Score=147.25 Aligned_cols=79 Identities=27% Similarity=0.406 Sum_probs=74.5
Q ss_pred hhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCCC--HHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHH
Q 017939 163 QDRKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAE--FKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKE 240 (363)
Q Consensus 163 ~~kk~k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s--~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~y 240 (363)
+++.++||++||||+|||+|||.++|..|+.+||+++ +.||+++||++|++||+++|.+|++.|..++++|..+|..|
T Consensus 6 ~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 85 (86)
T 2eqz_A 6 SGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDY 85 (86)
T ss_dssp SSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456789999999999999999999999999999986 69999999999999999999999999999999999999887
Q ss_pred h
Q 017939 241 R 241 (363)
Q Consensus 241 k 241 (363)
+
T Consensus 86 ~ 86 (86)
T 2eqz_A 86 G 86 (86)
T ss_dssp C
T ss_pred C
Confidence 3
No 6
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=5.7e-20 Score=150.78 Aligned_cols=81 Identities=32% Similarity=0.600 Sum_probs=76.9
Q ss_pred hhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 017939 163 QDRKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKERR 242 (363)
Q Consensus 163 ~~kk~k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk~ 242 (363)
++++++||++||||+|||+|||.++|..|+.+||++++.+|+++||++|++||+++|.+|.+.|..++++|..+|..|..
T Consensus 8 ~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~ 87 (102)
T 2co9_A 8 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRA 87 (102)
T ss_dssp SCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred h
Q 017939 243 E 243 (363)
Q Consensus 243 e 243 (363)
.
T Consensus 88 ~ 88 (102)
T 2co9_A 88 S 88 (102)
T ss_dssp H
T ss_pred h
Confidence 3
No 7
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.81 E-value=2.4e-20 Score=152.37 Aligned_cols=80 Identities=26% Similarity=0.432 Sum_probs=76.6
Q ss_pred hhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 017939 164 DRKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKERRE 243 (363)
Q Consensus 164 ~kk~k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk~e 243 (363)
+++++||++||||+|||+|||.++|..|+.+||+++++||+++||++|++||+++|++|.+.|..++++|..+|..|...
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~ 81 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRED 81 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999988764
No 8
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.80 E-value=5.6e-20 Score=142.74 Aligned_cols=75 Identities=32% Similarity=0.579 Sum_probs=72.7
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHh
Q 017939 167 KKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKER 241 (363)
Q Consensus 167 ~k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk 241 (363)
++||++||||+|||+|||.++|..|+.+||++++++|+++||++|++||+++|.+|.+.|..++.+|..+|..|+
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 75 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 75 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999999999999999999999999999999999999999998875
No 9
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.79 E-value=3.2e-19 Score=143.48 Aligned_cols=77 Identities=26% Similarity=0.558 Sum_probs=74.5
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 017939 167 KKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKERRE 243 (363)
Q Consensus 167 ~k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk~e 243 (363)
.+||++||||+|||+|||.++|..|+.+||++++.+|+++||++|++||+++|.+|.+.|..++++|..+|..|+..
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~ 78 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQS 78 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999764
No 10
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.78 E-value=7.8e-19 Score=154.16 Aligned_cols=95 Identities=28% Similarity=0.485 Sum_probs=85.7
Q ss_pred HHHhhhhccCCCCCCcccccchhhhhhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChh
Q 017939 138 KKLQKMKEFKPNMTLPIVQCLKDKEQDRKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAE 217 (363)
Q Consensus 138 ~k~r~mk~~~p~~~~p~~~~~~~k~~~kk~k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~e 217 (363)
+..++|..|.+..+. ++++.+||+.||||+|||+|||.++|..|+.+||++++++|+++||++|++||++
T Consensus 64 ~y~~~~~~y~~~k~~----------~kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~ 133 (159)
T 2gzk_A 64 MHREKYPNYKYRKGE----------TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD 133 (159)
T ss_dssp HHHHHCSSCSCCCCC----------CGGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHhhcccccccc----------ccccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHH
Confidence 445678888776442 3456789999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhh
Q 017939 218 EKKPYEEKYQAEKEAYLQVMAKERR 242 (363)
Q Consensus 218 EK~~Y~~~a~~~Ke~Y~ke~~~yk~ 242 (363)
+|++|.+.|..++++|..+|..|+.
T Consensus 134 eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 134 DKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999863
No 11
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.77 E-value=7.5e-20 Score=146.72 Aligned_cols=76 Identities=24% Similarity=0.433 Sum_probs=71.7
Q ss_pred hhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHH
Q 017939 163 QDRKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMA 238 (363)
Q Consensus 163 ~~kk~k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~ 238 (363)
++++++||++||||+|||+|||.++|..|+.+||++++.||+++||++|++||+++|++|++.|..++++|..+|.
T Consensus 11 ~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 11 QEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp SCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred cCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999987653
No 12
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.77 E-value=8.3e-19 Score=135.07 Aligned_cols=71 Identities=25% Similarity=0.482 Sum_probs=68.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 017939 170 CAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKERR 242 (363)
Q Consensus 170 p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk~ 242 (363)
.++||||+|||+|||+++|..|+.+||+++++||+++||++|++||+ |.+|++.|..++++|..+|..|+.
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~ 71 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEA 71 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999999999999999999999998 999999999999999999999864
No 13
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=6.4e-19 Score=141.75 Aligned_cols=76 Identities=29% Similarity=0.443 Sum_probs=73.1
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 017939 168 KGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKERRE 243 (363)
Q Consensus 168 k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk~e 243 (363)
.+|++||||+|||+|||.++|..|+.+||++++.||+++||++|++||+++|.+|.+.|..++++|..+|..|+..
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~ 78 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQ 78 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999988753
No 14
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.77 E-value=1.2e-19 Score=147.40 Aligned_cols=80 Identities=31% Similarity=0.514 Sum_probs=76.4
Q ss_pred hhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCCC--HHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHH
Q 017939 163 QDRKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAE--FKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKE 240 (363)
Q Consensus 163 ~~kk~k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s--~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~y 240 (363)
++++++||+.||||+|||+|||.++|..|+.+||+++ +.+|+++||++|++||+++|.+|++.|..++++|..+|..|
T Consensus 13 ~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y 92 (97)
T 2lhj_A 13 PRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAEY 92 (97)
T ss_dssp TTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457789999999999999999999999999999999 99999999999999999999999999999999999999998
Q ss_pred hh
Q 017939 241 RR 242 (363)
Q Consensus 241 k~ 242 (363)
..
T Consensus 93 ~~ 94 (97)
T 2lhj_A 93 AQ 94 (97)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 15
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.77 E-value=1.3e-19 Score=142.91 Aligned_cols=76 Identities=26% Similarity=0.444 Sum_probs=72.3
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHHHHCCCCC--HHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 017939 167 KKGCAERKRPSPPYILWCKDQWNEAKKENPEAE--FKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKERR 242 (363)
Q Consensus 167 ~k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s--~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk~ 242 (363)
++||++||||+|||+|||.++|..|+.+||+++ +.||+++||++|++||+++|.+|.+.|..++++|..+|..|..
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 79 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIP 79 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999999999986 5999999999999999999999999999999999999988754
No 16
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=154.46 Aligned_cols=96 Identities=29% Similarity=0.511 Sum_probs=87.9
Q ss_pred HHHHhhhhccCCCCCCcccccchhhhhhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCCh
Q 017939 137 LKKLQKMKEFKPNMTLPIVQCLKDKEQDRKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSA 216 (363)
Q Consensus 137 l~k~r~mk~~~p~~~~p~~~~~~~k~~~kk~k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~ 216 (363)
.+..++|..|.+..+. ++++.+||+.||||+|||+|||.++|..|+.+||++++++|+++||++|++||+
T Consensus 76 ~~y~~e~~~y~~~~~~----------~kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~ 145 (173)
T 2yrq_A 76 ARYEREMKTYIPPKGE----------TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAA 145 (173)
T ss_dssp HHTHHHHHHCCCCCCC----------SSCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCG
T ss_pred HHHHHHhhhhhhhhhh----------hcccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCH
Confidence 4567789999887653 345678999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhh
Q 017939 217 EEKKPYEEKYQAEKEAYLQVMAKERR 242 (363)
Q Consensus 217 eEK~~Y~~~a~~~Ke~Y~ke~~~yk~ 242 (363)
++|++|.+.|..++++|..+|..|+.
T Consensus 146 ~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 146 DDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999864
No 17
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-19 Score=141.81 Aligned_cols=76 Identities=24% Similarity=0.365 Sum_probs=72.3
Q ss_pred hhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHH
Q 017939 165 RKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKE 240 (363)
Q Consensus 165 kk~k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~y 240 (363)
+..+||+.||||+|||||||.++|..|+.+||++++.||+++||++|++||+++|++|++.|..++++|..++..|
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Y 85 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDC 85 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999876555
No 18
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.76 E-value=3.6e-19 Score=137.85 Aligned_cols=73 Identities=27% Similarity=0.440 Sum_probs=68.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHh
Q 017939 169 GCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKER 241 (363)
Q Consensus 169 ~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk 241 (363)
||+.||||+|||+|||+++|..|+.+||++++++|+++||++|++||+++|.+|.+.|..++++|..++..|+
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yk 73 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYK 73 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999887664
No 19
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.76 E-value=1.6e-19 Score=145.58 Aligned_cols=80 Identities=34% Similarity=0.576 Sum_probs=76.3
Q ss_pred hhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 017939 163 QDRKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKERR 242 (363)
Q Consensus 163 ~~kk~k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk~ 242 (363)
++++++||+.||||+|||+|||.++|..|+.+||++++.||+++||++|++||+++|.+|.+.|..++++|..+|..|..
T Consensus 11 ~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~~ 90 (93)
T 1cg7_A 11 TTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNA 90 (93)
T ss_dssp CCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHHH
T ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999865
No 20
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=137.30 Aligned_cols=79 Identities=32% Similarity=0.547 Sum_probs=73.4
Q ss_pred cCCCCCCCCCCCCCCCccccccccHHHHHHHHhhCCC----hHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHH
Q 017939 277 NKKPKKEKDPLKPKHPVTAYFLFSSERRAALLADNKN----VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEME 352 (363)
Q Consensus 277 ~kkkKk~kd~~~PKrP~SAY~lF~~e~r~~~~~e~p~----~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~ 352 (363)
|++++..+||+.||+|+|||++||+++|..+...||+ +.+|++.||++|++||+++|.+|.++|+.++++|..+|.
T Consensus 4 g~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~ 83 (86)
T 2eqz_A 4 GSSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMK 83 (86)
T ss_dssp CCSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667899999999999999999999999999873 599999999999999999999999999999999999999
Q ss_pred HHH
Q 017939 353 AYK 355 (363)
Q Consensus 353 ~yk 355 (363)
+|+
T Consensus 84 ~Y~ 86 (86)
T 2eqz_A 84 DYG 86 (86)
T ss_dssp HHC
T ss_pred HcC
Confidence 994
No 21
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=3.8e-18 Score=139.83 Aligned_cols=82 Identities=37% Similarity=0.629 Sum_probs=76.4
Q ss_pred CCCCCCCCCCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 017939 279 KPKKEKDPLKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKR 356 (363)
Q Consensus 279 kkKk~kd~~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~ 356 (363)
++++.+||+.||+|+|||||||+++|..+...|| ++.+|++.||.+|++||+++|++|.++|+.++++|..+|.+|+.
T Consensus 8 ~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~ 87 (102)
T 2co9_A 8 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRA 87 (102)
T ss_dssp SCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999999998887 68999999999999999999999999999999999999999998
Q ss_pred hhhh
Q 017939 357 RMKE 360 (363)
Q Consensus 357 ~~~E 360 (363)
+...
T Consensus 88 ~~~~ 91 (102)
T 2co9_A 88 SLVS 91 (102)
T ss_dssp HHTS
T ss_pred hccc
Confidence 8754
No 22
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.75 E-value=1.6e-18 Score=132.36 Aligned_cols=69 Identities=26% Similarity=0.466 Sum_probs=65.5
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHCCCCCH--HHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHH
Q 017939 172 ERKRPSPPYILWCKDQWNEAKKENPEAEF--KEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKE 240 (363)
Q Consensus 172 ~PKrP~say~lF~~e~r~~ik~e~P~~s~--~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~y 240 (363)
.||||+|||++||.++|..|+.+||++++ +||+++||++|++||+++|.+|.+.|..++++|..+|..|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999999999999999999999964 9999999999999999999999999999999999998654
No 23
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.75 E-value=1.9e-18 Score=136.97 Aligned_cols=73 Identities=27% Similarity=0.439 Sum_probs=70.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHh
Q 017939 169 GCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKER 241 (363)
Q Consensus 169 ~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk 241 (363)
.|+.||||+|||+|||.++|..|+.+||+++++||+++||++|++||+++|.+|.+.|..++++|..++..|+
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk 73 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYK 73 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999988774
No 24
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.74 E-value=1.7e-18 Score=133.36 Aligned_cols=71 Identities=27% Similarity=0.530 Sum_probs=68.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 017939 170 CAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKERR 242 (363)
Q Consensus 170 p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk~ 242 (363)
|++||||+|||++||.++|..|+.+||+++++||+++||++|++| ++|.+|.+.|..++++|..+|..|+.
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~ 71 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKP 71 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTT
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 689999999999999999999999999999999999999999999 89999999999999999999988864
No 25
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.74 E-value=1.4e-18 Score=141.84 Aligned_cols=82 Identities=27% Similarity=0.495 Sum_probs=76.6
Q ss_pred CCCCCCCCCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017939 280 PKKEKDPLKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKRR 357 (363)
Q Consensus 280 kKk~kd~~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~~ 357 (363)
+++.+||+.||+|+||||+||++.|..+..++| ++.+|++.||++|++||+++|++|.++|+.++++|..+|.+|..+
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~ 81 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRED 81 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345679999999999999999999999999887 689999999999999999999999999999999999999999998
Q ss_pred hhhh
Q 017939 358 MKEL 361 (363)
Q Consensus 358 ~~E~ 361 (363)
+++.
T Consensus 82 ~P~~ 85 (99)
T 1k99_A 82 HPDL 85 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8754
No 26
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.73 E-value=1.3e-18 Score=136.77 Aligned_cols=74 Identities=24% Similarity=0.529 Sum_probs=70.9
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHh
Q 017939 168 KGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKER 241 (363)
Q Consensus 168 k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk 241 (363)
.+++.||||+|||+|||+++|..|+.+||++++.+|+++||++|++||+++|++|.+.|..++++|..++..|+
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk 76 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYR 76 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999998887765
No 27
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.73 E-value=3.9e-18 Score=134.15 Aligned_cols=73 Identities=23% Similarity=0.520 Sum_probs=67.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHh
Q 017939 169 GCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKER 241 (363)
Q Consensus 169 ~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk 241 (363)
.++.||||+|||+|||+++|..|+.+||++++++|+++||++|++||+++|.+|.+.|..+++.|..++..|+
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yk 75 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 75 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCe
Confidence 4678999999999999999999999999999999999999999999999999999999999999999988774
No 28
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.73 E-value=2.6e-18 Score=130.89 Aligned_cols=70 Identities=24% Similarity=0.564 Sum_probs=63.0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHh
Q 017939 172 ERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKER 241 (363)
Q Consensus 172 ~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk 241 (363)
.||||+|||+|||+++|..|+.+||++++++|+++||++|++||+++|.+|.+.|..++++|..++..|+
T Consensus 2 k~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 2 SIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 5899999999999999999999999999999999999999999999999999999999999998887663
No 29
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.72 E-value=5.1e-18 Score=140.14 Aligned_cols=77 Identities=18% Similarity=0.396 Sum_probs=69.6
Q ss_pred hhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHh
Q 017939 165 RKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKER 241 (363)
Q Consensus 165 kk~k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk 241 (363)
...++++.||||+|||+|||+++|..|+.+||++++++|+++||++|++||+++|++|.+.|..++++|..++..|+
T Consensus 22 ~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yk 98 (106)
T 4euw_A 22 QSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYK 98 (106)
T ss_dssp ------CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred hccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999998875
No 30
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.72 E-value=5.2e-18 Score=132.64 Aligned_cols=71 Identities=27% Similarity=0.538 Sum_probs=68.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHh
Q 017939 171 AERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKER 241 (363)
Q Consensus 171 ~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk 241 (363)
+.||||+|||+|||+++|..|+.+||++++++|+++||++|++||+++|.+|.+.|..++++|..++..|+
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk 71 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYK 71 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999988774
No 31
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.72 E-value=3.9e-18 Score=132.33 Aligned_cols=73 Identities=44% Similarity=0.778 Sum_probs=69.8
Q ss_pred CCCCCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 017939 284 KDPLKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKR 356 (363)
Q Consensus 284 kd~~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~ 356 (363)
+||+.||||+|||++|++++|..+...+| ++.+|++.||.+|++||+++|.+|.++|+.++++|..+|++|++
T Consensus 2 kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 2 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999998887 68999999999999999999999999999999999999999865
No 32
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.71 E-value=1.2e-17 Score=138.45 Aligned_cols=82 Identities=22% Similarity=0.385 Sum_probs=75.6
Q ss_pred CCCCCCCCCCCC-CCCccccccccHHHHHHHHhhCCChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 017939 278 KKPKKEKDPLKP-KHPVTAYFLFSSERRAALLADNKNVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKR 356 (363)
Q Consensus 278 kkkKk~kd~~~P-KrP~SAY~lF~~e~r~~~~~e~p~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~ 356 (363)
.+.++.+|++.| |||+|||++||+++|..+. +.++.+|++.||++|++||+++|.+|.++|+.++++|..+|.+|..
T Consensus 6 ~~~kk~kd~~~P~KrP~say~lF~~e~r~~~k--~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~ 83 (108)
T 1v64_A 6 SGQLKDKFDGRPTKPPPNSYSLYCAELMANMK--DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLE 83 (108)
T ss_dssp SCCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667899999 9999999999999999876 7899999999999999999999999999999999999999999999
Q ss_pred hhhhh
Q 017939 357 RMKEL 361 (363)
Q Consensus 357 ~~~E~ 361 (363)
++.++
T Consensus 84 ~~~~~ 88 (108)
T 1v64_A 84 SLPEE 88 (108)
T ss_dssp HSCHH
T ss_pred hCCHH
Confidence 87653
No 33
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7.5e-18 Score=135.47 Aligned_cols=78 Identities=29% Similarity=0.474 Sum_probs=73.5
Q ss_pred CCCCCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 017939 284 KDPLKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKRRMKEL 361 (363)
Q Consensus 284 kd~~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~~~~E~ 361 (363)
.+++.||||+|||++|++++|..+..+|| ++.+|++.||++|++||+++|++|.++|+.++++|..+|.+|..++.+.
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~~~ 82 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQM 82 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46889999999999999999999999987 6799999999999999999999999999999999999999999987654
No 34
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.71 E-value=1.7e-17 Score=133.34 Aligned_cols=76 Identities=32% Similarity=0.559 Sum_probs=71.9
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017939 283 EKDPLKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKRRM 358 (363)
Q Consensus 283 ~kd~~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~~~ 358 (363)
.+||+.||||+|||++|++++|..+...+| ++.+|++.||.+|++||+++|++|.++|+.++++|..+|.+|+.+.
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~ 79 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSE 79 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 368999999999999999999999998887 6899999999999999999999999999999999999999998754
No 35
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.71 E-value=2e-18 Score=139.12 Aligned_cols=83 Identities=36% Similarity=0.702 Sum_probs=76.5
Q ss_pred hcCCCCCCCCCCCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHH
Q 017939 276 ENKKPKKEKDPLKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEA 353 (363)
Q Consensus 276 k~kkkKk~kd~~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~ 353 (363)
++++++..+|++.|++|+|||+|||+++|..+..+|| ++.+|++.||.+|++||+++|.+|.++|+.++++|..+|.+
T Consensus 8 k~~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~ 87 (93)
T 1cg7_A 8 KKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKEL 87 (93)
T ss_dssp CCCCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHH
T ss_pred CcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566789999999999999999999999988887 68999999999999999999999999999999999999999
Q ss_pred HHhhh
Q 017939 354 YKRRM 358 (363)
Q Consensus 354 yk~~~ 358 (363)
|..+.
T Consensus 88 Y~~~~ 92 (93)
T 1cg7_A 88 YNATL 92 (93)
T ss_dssp HHHHT
T ss_pred HHHcc
Confidence 99864
No 36
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.70 E-value=1.7e-17 Score=137.49 Aligned_cols=77 Identities=23% Similarity=0.352 Sum_probs=72.6
Q ss_pred hhhhccCCCCC-CCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHh
Q 017939 163 QDRKKKGCAER-KRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKER 241 (363)
Q Consensus 163 ~~kk~k~p~~P-KrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk 241 (363)
+.++.+|++.| |||+|||+|||.++|..|+ ++++.||++.||++|++||+++|.+|.+.|..++++|..+|..|.
T Consensus 7 ~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~ 82 (108)
T 1v64_A 7 GQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFL 82 (108)
T ss_dssp CCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999 9999999999999999887 789999999999999999999999999999999999999999998
Q ss_pred hh
Q 017939 242 RE 243 (363)
Q Consensus 242 ~e 243 (363)
..
T Consensus 83 ~~ 84 (108)
T 1v64_A 83 ES 84 (108)
T ss_dssp HH
T ss_pred hh
Confidence 74
No 37
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.70 E-value=3.9e-18 Score=138.44 Aligned_cols=82 Identities=30% Similarity=0.741 Sum_probs=75.6
Q ss_pred cCCCCCCCCCCCCCCCccccccccHHHHHHHHhhCC--C--hHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHH
Q 017939 277 NKKPKKEKDPLKPKHPVTAYFLFSSERRAALLADNK--N--VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEME 352 (363)
Q Consensus 277 ~kkkKk~kd~~~PKrP~SAY~lF~~e~r~~~~~e~p--~--~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~ 352 (363)
+++++..+|++.|++|+|||+|||+++|..+...|| + +.+|++.||.+|++||+++|.+|.++|+.++++|..+|.
T Consensus 11 ~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 90 (97)
T 2lhj_A 11 RRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKA 90 (97)
T ss_dssp CCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566789999999999999999999999998887 4 789999999999999999999999999999999999999
Q ss_pred HHHhhh
Q 017939 353 AYKRRM 358 (363)
Q Consensus 353 ~yk~~~ 358 (363)
+|..+.
T Consensus 91 ~y~~~~ 96 (97)
T 2lhj_A 91 EYAQRK 96 (97)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999864
No 38
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.70 E-value=1e-17 Score=130.37 Aligned_cols=71 Identities=18% Similarity=0.424 Sum_probs=67.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHh
Q 017939 171 AERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKER 241 (363)
Q Consensus 171 ~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk 241 (363)
+.||||+|||+|||+++|..|+.+||++++++|+++||++|++||+++|.+|.+.|..+++.|..++..|+
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yk 71 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYK 71 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCe
Confidence 36899999999999999999999999999999999999999999999999999999999999999987764
No 39
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.70 E-value=8.3e-18 Score=131.87 Aligned_cols=72 Identities=26% Similarity=0.532 Sum_probs=67.8
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHh
Q 017939 170 CAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKER 241 (363)
Q Consensus 170 p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk 241 (363)
++.||||+|||||||+++|..|+.+||+++++||+++||++|++||+++|.+|.+.|..+++.|..++..|+
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 73 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYK 73 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC-
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCe
Confidence 578999999999999999999999999999999999999999999999999999999999999999887764
No 40
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.70 E-value=2e-17 Score=131.20 Aligned_cols=70 Identities=26% Similarity=0.414 Sum_probs=67.8
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHh
Q 017939 172 ERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKER 241 (363)
Q Consensus 172 ~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk 241 (363)
.|+||+|||||||+++|..|+.+||++++++|+++||++|++||+++|.+|.+.|..++++|..++..|+
T Consensus 2 ~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk 71 (86)
T 2lef_A 2 HIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWS 71 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999988775
No 41
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.70 E-value=2.7e-17 Score=132.18 Aligned_cols=72 Identities=13% Similarity=0.231 Sum_probs=69.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 017939 171 AERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKERRE 243 (363)
Q Consensus 171 ~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk~e 243 (363)
+.||||+|||++|+++.|..++..||+ +++||++.||++|++||+++|.+|++.|..++++|+++|..|...
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~ 74 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAP 74 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 579999999999999999999999999 999999999999999999999999999999999999999998753
No 42
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.69 E-value=2.2e-17 Score=124.94 Aligned_cols=66 Identities=27% Similarity=0.524 Sum_probs=62.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHH
Q 017939 171 AERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKE 240 (363)
Q Consensus 171 ~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~y 240 (363)
+.||||+|||++||+++|..++..|| ++|++.||++|++||+++|.+|.+.|..++++|..+|..|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999987665 7999999999999999999999999999999999999876
No 43
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.69 E-value=5.8e-18 Score=133.34 Aligned_cols=75 Identities=29% Similarity=0.562 Sum_probs=70.3
Q ss_pred CCCCCCCCCccccccccHHHHHHHHhhCCC----hHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017939 284 KDPLKPKHPVTAYFLFSSERRAALLADNKN----VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKRRM 358 (363)
Q Consensus 284 kd~~~PKrP~SAY~lF~~e~r~~~~~e~p~----~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~~~ 358 (363)
+||+.||+|+|||++||+++|..+...||+ +.+|++.||.+|++||+++|.+|.++|..++++|..+|.+|....
T Consensus 3 kdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 81 (83)
T 1aab_A 3 GDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPK 81 (83)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 689999999999999999999999998873 499999999999999999999999999999999999999997653
No 44
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.68 E-value=4.5e-17 Score=125.31 Aligned_cols=70 Identities=34% Similarity=0.616 Sum_probs=66.4
Q ss_pred CCCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017939 286 PLKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKRR 357 (363)
Q Consensus 286 ~~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~~ 357 (363)
++.||||+|||++||+++|..+..+|| ++.+|++.||++|++||+ |++|.++|..++++|..+|++|+.+
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 368999999999999999999999987 689999999999999998 9999999999999999999999875
No 45
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.68 E-value=3e-17 Score=124.17 Aligned_cols=67 Identities=33% Similarity=0.579 Sum_probs=62.6
Q ss_pred CCCCCCccccccccHHHHHHHHhhCCChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHH
Q 017939 287 LKPKHPVTAYFLFSSERRAALLADNKNVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355 (363)
Q Consensus 287 ~~PKrP~SAY~lF~~e~r~~~~~e~p~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk 355 (363)
|.||||+|||++||+++|..+...+| .+|++.||++|++||+++|.+|.++|..++++|..+|.+|.
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p--~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~ 67 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP--QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWA 67 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH--HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57999999999999999999876665 79999999999999999999999999999999999999983
No 46
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.68 E-value=3.8e-17 Score=131.31 Aligned_cols=76 Identities=18% Similarity=0.276 Sum_probs=71.7
Q ss_pred CCCCCCccccccccHHHHHHHHhhCC-ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 017939 287 LKPKHPVTAYFLFSSERRAALLADNK-NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKRRMKELL 362 (363)
Q Consensus 287 ~~PKrP~SAY~lF~~e~r~~~~~e~p-~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~~~~E~~ 362 (363)
+.|+||+|||++|+++.|..+...++ ++.+|++.||++|++||+++|++|+++|..++++|..+|.+|..+..+..
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~~~ 79 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATN 79 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTSTHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 58999999999999999999999887 78999999999999999999999999999999999999999998877644
No 47
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.67 E-value=1.9e-17 Score=128.04 Aligned_cols=72 Identities=28% Similarity=0.451 Sum_probs=66.7
Q ss_pred CCCCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 017939 285 DPLKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKR 356 (363)
Q Consensus 285 d~~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~ 356 (363)
||+.||||+|||++|++++|..+..++| ++.+|++.||.+|++||+++|++|.++|+.++++|..++++|+-
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 74 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 5789999999999999999999998887 68999999999999999999999999999999999999998863
No 48
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-17 Score=131.11 Aligned_cols=75 Identities=25% Similarity=0.362 Sum_probs=70.4
Q ss_pred CCCCCCCCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHH
Q 017939 281 KKEKDPLKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355 (363)
Q Consensus 281 Kk~kd~~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk 355 (363)
+..+|++.||||+||||||++++|..+...+| ++.+|+++||++|++||+++|++|.++|+.++++|..++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 45679999999999999999999999999887 6899999999999999999999999999999999999998874
No 49
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6.5e-17 Score=127.49 Aligned_cols=61 Identities=20% Similarity=0.393 Sum_probs=59.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHCCCCC-HHHHHHHHhhccccCChhhhhhhHHHHHHH
Q 017939 169 GCAERKRPSPPYILWCKDQWNEAKKENPEAE-FKEITNILGAKWKNVSAEEKKPYEEKYQAE 229 (363)
Q Consensus 169 ~p~~PKrP~say~lF~~e~r~~ik~e~P~~s-~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~ 229 (363)
+++.||||+|||+|||+++|..|+.+||+++ ++||+++||++|++||+++|++|++.|..+
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999998 999999999999999999999999999776
No 50
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.66 E-value=1.6e-16 Score=130.21 Aligned_cols=77 Identities=18% Similarity=0.352 Sum_probs=67.4
Q ss_pred CCCCCCCCccccccccHHHHHHHHhhCCChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 017939 285 DPLKPKHPVTAYFLFSSERRAALLADNKNVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKRRMKEL 361 (363)
Q Consensus 285 d~~~PKrP~SAY~lF~~e~r~~~~~e~p~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~~~~E~ 361 (363)
..++||||+|||++||++++......+.++.||++.||++|++||+++|++|.++|+.++++|..+|.+|..++.++
T Consensus 5 ~~~~PKrP~say~lF~~e~~~~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~~ 81 (101)
T 1v63_A 5 SSGPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQ 81 (101)
T ss_dssp CCSSCCCCSSSHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCCCCCCCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 46789999999999999997632222346899999999999999999999999999999999999999999987653
No 51
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.66 E-value=6e-17 Score=123.57 Aligned_cols=67 Identities=30% Similarity=0.600 Sum_probs=63.3
Q ss_pred CCCCCccccccccHHHHHHHHhhCCC----hHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHH
Q 017939 288 KPKHPVTAYFLFSSERRAALLADNKN----VLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAY 354 (363)
Q Consensus 288 ~PKrP~SAY~lF~~e~r~~~~~e~p~----~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~y 354 (363)
+||||+|||++|++++|..+...||+ +.+|++.||++|++||+++|.+|.++|+.++++|..+|.+|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 49999999999999999999998873 49999999999999999999999999999999999999876
No 52
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.66 E-value=2.6e-16 Score=128.84 Aligned_cols=74 Identities=16% Similarity=0.304 Sum_probs=66.8
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 017939 168 KGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKERRE 243 (363)
Q Consensus 168 k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk~e 243 (363)
....+||||+|||+|||++++. ...+++++++||++.||++|++||++||++|++.|..++++|..+|..|...
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~ 77 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKS 77 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567899999999999999974 3345668999999999999999999999999999999999999999999875
No 53
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.65 E-value=2.5e-17 Score=131.96 Aligned_cols=75 Identities=24% Similarity=0.454 Sum_probs=69.0
Q ss_pred CCCCCCCCCCCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHH
Q 017939 278 KKPKKEKDPLKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEME 352 (363)
Q Consensus 278 kkkKk~kd~~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~ 352 (363)
++.++.+||+.||+|+|||||||+++|..+...|| ++.+|++.||++|++||+++|++|.++|+.++++|..+|.
T Consensus 10 k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 10 SQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp CSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999999999987 6899999999999999999999999999999999987764
No 54
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-17 Score=134.25 Aligned_cols=69 Identities=22% Similarity=0.332 Sum_probs=65.1
Q ss_pred hhhhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCCC--HHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHH
Q 017939 163 QDRKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAE--FKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQ 235 (363)
Q Consensus 163 ~~kk~k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s--~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~k 235 (363)
..+.++||++||||+|||||||+++|+.|+.+||+++ ++||+ ++|++|++++|++|++.|+.+++.|..
T Consensus 13 ~~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~ 83 (90)
T 2yuk_A 13 TLKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRI 83 (90)
T ss_dssp HHHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999999999999999999 99998 999999999999999999999998864
No 55
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.65 E-value=5.3e-17 Score=123.66 Aligned_cols=69 Identities=26% Similarity=0.520 Sum_probs=60.3
Q ss_pred CCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHH
Q 017939 287 LKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYK 355 (363)
Q Consensus 287 ~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk 355 (363)
|.||||+|||++|+++.|..+...+| ++.+|++.||++|++||+++|.+|.++|+.++++|..++++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 57899999999999999999998887 6899999999999999999999999999999999999999985
No 56
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.64 E-value=7.7e-17 Score=124.01 Aligned_cols=70 Identities=36% Similarity=0.675 Sum_probs=66.3
Q ss_pred CCCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017939 286 PLKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKRR 357 (363)
Q Consensus 286 ~~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~~ 357 (363)
|+.||||+|||++|++++|..+...|| ++.+|++.||.+|++| ++|.+|.++|+.++++|..+|.+|+++
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 678999999999999999999999987 6799999999999999 999999999999999999999999764
No 57
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.64 E-value=1.6e-16 Score=125.76 Aligned_cols=72 Identities=29% Similarity=0.487 Sum_probs=68.2
Q ss_pred CCCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017939 286 PLKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKRR 357 (363)
Q Consensus 286 ~~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~~ 357 (363)
|+.|+||+||||+||+++|..+...+| ++.+|++.||.+|++||+++|++|.++|+.++++|..++++|+.+
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 75 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccC
Confidence 688999999999999999999998887 689999999999999999999999999999999999999998753
No 58
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.63 E-value=4.9e-17 Score=127.76 Aligned_cols=74 Identities=19% Similarity=0.443 Sum_probs=69.3
Q ss_pred CCCCCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017939 284 KDPLKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKRR 357 (363)
Q Consensus 284 kd~~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~~ 357 (363)
.+++.||||+|||++|++++|..+..++| ++.+|++.||.+|++||+++|++|.++|+.++++|..++++|+.+
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~ 78 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSG 78 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcC
Confidence 46889999999999999999999999887 689999999999999999999999999999999999999988654
No 59
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.62 E-value=2.8e-16 Score=122.70 Aligned_cols=71 Identities=31% Similarity=0.531 Sum_probs=66.7
Q ss_pred CCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017939 287 LKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKRR 357 (363)
Q Consensus 287 ~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~~ 357 (363)
+.|++|+|||++|++++|..+...+| ++.+|++.||.+|++||+++|++|.++|+.++++|..++++|+.+
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~ 73 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYR 73 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccC
Confidence 46999999999999999999998887 689999999999999999999999999999999999999998753
No 60
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.62 E-value=2e-16 Score=124.37 Aligned_cols=72 Identities=25% Similarity=0.492 Sum_probs=65.2
Q ss_pred CCCCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 017939 285 DPLKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKR 356 (363)
Q Consensus 285 d~~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~ 356 (363)
.++.||||+|||||||+++|..+...+| ++.+|++.||++|++||+++|++|.++|+.++++|..++++|+-
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 76 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKY 76 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 3568999999999999999999999887 68999999999999999999999999999999999999999864
No 61
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.62 E-value=3.6e-16 Score=123.93 Aligned_cols=70 Identities=23% Similarity=0.518 Sum_probs=66.4
Q ss_pred CCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 017939 287 LKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKR 356 (363)
Q Consensus 287 ~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~ 356 (363)
+.|++|+||||||++++|..+..++| ++.+|++.||.+|++||+++|++|.++|+.++++|..++++|..
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~ 72 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSA 72 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccC
Confidence 46999999999999999999998887 68999999999999999999999999999999999999999963
No 62
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-16 Score=128.07 Aligned_cols=69 Identities=17% Similarity=0.335 Sum_probs=65.7
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH---hhccccCChhhhhhhHHHHHHHHHHHHHHH
Q 017939 167 KKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNIL---GAKWKNVSAEEKKPYEEKYQAEKEAYLQVM 237 (363)
Q Consensus 167 ~k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~l---ge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~ 237 (363)
..+++.||||+|||+|||+++|+.|+.+ +++++||+++| |++|++||++||++|++.|..+++.|.+++
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 4688999999999999999999999998 89999999999 999999999999999999999999999875
No 63
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.62 E-value=2.8e-16 Score=129.68 Aligned_cols=76 Identities=24% Similarity=0.461 Sum_probs=67.3
Q ss_pred CCCCCCCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017939 282 KEKDPLKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKRR 357 (363)
Q Consensus 282 k~kd~~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~~ 357 (363)
..++++.||||+|||+|||++.|..+...+| ++.+|++.||++|++||+++|++|.++|+.++++|..++++|+-+
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~ 100 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQ 100 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC-
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcC
Confidence 4567899999999999999999999998887 689999999999999999999999999999999999999998653
No 64
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.61 E-value=2.4e-16 Score=122.61 Aligned_cols=70 Identities=23% Similarity=0.426 Sum_probs=66.4
Q ss_pred CCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 017939 287 LKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKR 356 (363)
Q Consensus 287 ~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~ 356 (363)
|.||||+|||+|||+++|..+..++| ++.+|++.||++|++||+++|++|.++|+.++++|..++++|+-
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky 72 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKY 72 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 57899999999999999999998887 68999999999999999999999999999999999999998864
No 65
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.60 E-value=3.6e-16 Score=122.50 Aligned_cols=72 Identities=26% Similarity=0.483 Sum_probs=65.3
Q ss_pred CCCCCCCccccccccHHHHHHHHhhCC--ChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017939 286 PLKPKHPVTAYFLFSSERRAALLADNK--NVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKRR 357 (363)
Q Consensus 286 ~~~PKrP~SAY~lF~~e~r~~~~~e~p--~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~~ 357 (363)
.+.||||+||||||++++|..+...+| ++.+|++.||.+|++||+++|++|.+.|+.++++|..++++|+-+
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~ 75 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYK 75 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC---
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeec
Confidence 468999999999999999999998887 689999999999999999999999999999999999999988754
No 66
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=134.15 Aligned_cols=75 Identities=24% Similarity=0.455 Sum_probs=69.2
Q ss_pred hhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 017939 165 RKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKERRE 243 (363)
Q Consensus 165 kk~k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk~e 243 (363)
+..+||+.||||+|||+|||+++|..|++.|| ++|++.||++|++||+++|++|++.|..++++|..+|..|...
T Consensus 107 k~~kdp~~PKrP~say~lF~~e~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~ 181 (214)
T 3tq6_A 107 KELTLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 181 (214)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCcccccchhhhhHHHHHHhhccCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34679999999999999999999998876555 5999999999999999999999999999999999999999875
No 67
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=136.33 Aligned_cols=75 Identities=24% Similarity=0.455 Sum_probs=69.3
Q ss_pred hhccCCCCCCCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhccccCChhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 017939 165 RKKKGCAERKRPSPPYILWCKDQWNEAKKENPEAEFKEITNILGAKWKNVSAEEKKPYEEKYQAEKEAYLQVMAKERRE 243 (363)
Q Consensus 165 kk~k~p~~PKrP~say~lF~~e~r~~ik~e~P~~s~~Ei~K~lge~Wk~LS~eEK~~Y~~~a~~~Ke~Y~ke~~~yk~e 243 (363)
+..+||++||||+|||+|||+++|..|+..|| ++|++.||++|++||+++|++|++.|..++++|..+|..|+..
T Consensus 139 k~~kdp~~PKrP~say~lF~~e~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k 213 (238)
T 3tmm_A 139 KELTLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 213 (238)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH----HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCCCCCcHHHHHHHHHHHHHhccCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34689999999999999999999999886655 4999999999999999999999999999999999999999875
No 68
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.8e-15 Score=121.15 Aligned_cols=69 Identities=23% Similarity=0.379 Sum_probs=64.6
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHhhCCChHHHHHHH---HHHhccCChHHhHHHHHHHHHHHHHHHHHH
Q 017939 283 EKDPLKPKHPVTAYFLFSSERRAALLADNKNVLEVAKIT---GEEWKNMTEEQKRPYEEIAKKNKEKYNEEM 351 (363)
Q Consensus 283 ~kd~~~PKrP~SAY~lF~~e~r~~~~~e~p~~~ei~k~l---~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~ 351 (363)
..+++.||||+||||+||+++|..+..++.++.+|++.| |++|++|+++||++|.++|.+++++|..++
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRRGLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHHTCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 356789999999999999999999988888999999999 999999999999999999999999999875
No 69
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.7e-14 Score=113.59 Aligned_cols=59 Identities=19% Similarity=0.338 Sum_probs=55.8
Q ss_pred CCCCCCCCccccccccHHHHHHHHhhCC--C-hHHHHHHHHHHhccCChHHhHHHHHHHHHH
Q 017939 285 DPLKPKHPVTAYFLFSSERRAALLADNK--N-VLEVAKITGEEWKNMTEEQKRPYEEIAKKN 343 (363)
Q Consensus 285 d~~~PKrP~SAY~lF~~e~r~~~~~e~p--~-~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ 343 (363)
+++.||||+||||+||+++|..+..+|| + +.+|++.||++|++||+++|++|.++|..+
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999987 4 899999999999999999999999999876
No 70
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.46 E-value=4.1e-15 Score=119.36 Aligned_cols=68 Identities=16% Similarity=0.266 Sum_probs=61.2
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHhhCCChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHH
Q 017939 283 EKDPLKPKHPVTAYFLFSSERRAALLADNKNVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEE 350 (363)
Q Consensus 283 ~kd~~~PKrP~SAY~lF~~e~r~~~~~e~p~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E 350 (363)
.+||+.||||+|||||||++.|..+..+||+..+....|+++|++|++++|++|.+.|++++++|..+
T Consensus 17 ~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIse~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 17 EKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIAKLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999999999999999986655556669999999999999999999999999753
No 71
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=86.60 E-value=1.7 Score=32.86 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=32.0
Q ss_pred HhhhhHHHhhhhHHHHHhhhHHHHHHHHHHHHHhhh
Q 017939 108 LLKEKDEMLKMKEEELELQGKEQEKLHMELKKLQKM 143 (363)
Q Consensus 108 ~~~e~~~~l~~k~~e~~~~~~~~~~lq~~l~k~r~m 143 (363)
-+..+|++|+..+.++..++.+...|+.+|-|+|-+
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 367888899999999999999999999999998753
No 72
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=64.20 E-value=7.9 Score=28.79 Aligned_cols=42 Identities=29% Similarity=0.328 Sum_probs=31.9
Q ss_pred HHHHHHhhhhHHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhh
Q 017939 103 EKTEELLKEKDEMLKMKEEELELQGKEQEKLHMELKKLQKMK 144 (363)
Q Consensus 103 e~~e~~~~e~~~~l~~k~~e~~~~~~~~~~lq~~l~k~r~mk 144 (363)
|..-++++.+|+.+..-+.++..++.+...|+..|.|++-+-
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444567788888888888889999999999999999998774
No 73
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=51.18 E-value=80 Score=24.15 Aligned_cols=56 Identities=23% Similarity=0.362 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHhhhhHHHhhhhHHHHHhhhHHHHHHHHHHH
Q 017939 83 SFDKDLQEMQEMLEKMKLEKEKTEELLKEKDEMLKMKEEELELQGKEQEKLHMELK 138 (363)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~e~~e~~~~e~~~~l~~k~~e~~~~~~~~~~lq~~l~ 138 (363)
.|-.||..|+-+++.|.-|+-..|.-|+-=-+.|-.--..++.++.+.++||.+|.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 56677778888888777766666666644433344455568888889999998873
No 74
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=47.29 E-value=49 Score=24.85 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhhhHHHHHHhhhhHHHhhhhHHHHHhhhHHHHHH
Q 017939 90 EMQEMLEKMKLEKEKTEELLKEKDEMLKMKEEELELQGKEQEKL 133 (363)
Q Consensus 90 ~~~~~l~~~~~~~e~~e~~~~e~~~~l~~k~~e~~~~~~~~~~l 133 (363)
.+++++..|+++.+.+.+-+..=...++..+......+.+...|
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L 46 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVAL 46 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45666666666666665554444443444444333333333333
No 75
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=46.94 E-value=83 Score=24.68 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhhhHHHhhhhHHHHHhhhHHHHHHHHHHHH
Q 017939 88 LQEMQEMLEKMKLEKEKTEELLKEKDEMLKMKEEELELQGKEQEKLHMELKK 139 (363)
Q Consensus 88 ~~~~~~~l~~~~~~~e~~e~~~~e~~~~l~~k~~e~~~~~~~~~~lq~~l~k 139 (363)
++.+++++.-|+++++.+.+-...=..-++..+.+....+.+...|+..+..
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~ 55 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRV 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5778889999999999888777666555555555555555555555544443
No 76
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=46.39 E-value=21 Score=31.79 Aligned_cols=47 Identities=23% Similarity=0.518 Sum_probs=35.5
Q ss_pred CCCCHHHHHH-HHhhccccCChhhhhhhHHHHHHHHHH-HHHHHHHHhh
Q 017939 196 PEAEFKEITN-ILGAKWKNVSAEEKKPYEEKYQAEKEA-YLQVMAKERR 242 (363)
Q Consensus 196 P~~s~~Ei~K-~lge~Wk~LS~eEK~~Y~~~a~~~Ke~-Y~ke~~~yk~ 242 (363)
|-.++..+++ .||.-|+.+|+++++.|.+.+.....+ |-..+..|..
T Consensus 70 p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~ 118 (211)
T 2qgu_A 70 PRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRN 118 (211)
T ss_dssp GGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred hhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4556777766 469999999999999999888775544 7666665543
No 77
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=41.99 E-value=1.1e+02 Score=23.83 Aligned_cols=51 Identities=22% Similarity=0.351 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhhhHHHhhhhHHHHHhhhHHHHHHHHHHH
Q 017939 88 LQEMQEMLEKMKLEKEKTEELLKEKDEMLKMKEEELELQGKEQEKLHMELK 138 (363)
Q Consensus 88 ~~~~~~~l~~~~~~~e~~e~~~~e~~~~l~~k~~e~~~~~~~~~~lq~~l~ 138 (363)
++.+.+++.-|+++++.+.+-...=..-++.-+.+....+.+...|+-.+.
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq 54 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLK 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567788888888888888877766555555555554445555555544444
No 78
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=37.82 E-value=65 Score=24.15 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=20.8
Q ss_pred HHHHhhhhHHHhhhhHHHHHhhhHHHHHHHHHHHHHh
Q 017939 105 TEELLKEKDEMLKMKEEELELQGKEQEKLHMELKKLQ 141 (363)
Q Consensus 105 ~e~~~~e~~~~l~~k~~e~~~~~~~~~~lq~~l~k~r 141 (363)
.++++..+++-|..+++.++..+.+......+|+.++
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566566666665555555555555555553
No 79
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=36.88 E-value=50 Score=21.15 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhhhh
Q 017939 84 FDKDLQEMQEMLEKMKLEKEKTEELLKEK 112 (363)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~e~~e~~~~e~ 112 (363)
|++++++|=.+...+..|-....+||.+|
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~lLg~r 34 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAKLLGER 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCC
Confidence 45666666666666666666666666553
No 80
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=32.84 E-value=1.9e+02 Score=23.60 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=41.6
Q ss_pred cCCcHHHHHHHHHHHHHHhhhhhHHHHHHhhhhHHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhhc
Q 017939 80 QDTSFDKDLQEMQEMLEKMKLEKEKTEELLKEKDEMLKMKEEELELQGKEQEKLHMELKKLQKMKE 145 (363)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~e~~e~~~~e~~~~l~~k~~e~~~~~~~~~~lq~~l~k~r~mk~ 145 (363)
.++|++-.|..|...|++|. ..+ +.+..++...-+.-...|.....-...++..|.++..+..
T Consensus 3 ~a~~i~~~l~~Leae~q~L~--~~E-~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~ 65 (119)
T 3etw_A 3 DAASLVGELQALDAEYQNLA--NQE-EARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEAN 65 (119)
T ss_dssp -CHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35788889999999888883 222 2334444444455555566677777788888888877763
No 81
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=32.18 E-value=29 Score=23.15 Aligned_cols=14 Identities=29% Similarity=0.518 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhh
Q 017939 86 KDLQEMQEMLEKMK 99 (363)
Q Consensus 86 ~~~~~~~~~l~~~~ 99 (363)
++|++||..|+-||
T Consensus 26 edi~~MqsRLaALR 39 (40)
T 2xze_Q 26 EALEAMQSRLATLR 39 (40)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 57899999998875
No 82
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=31.37 E-value=25 Score=31.33 Aligned_cols=48 Identities=17% Similarity=0.294 Sum_probs=36.3
Q ss_pred CCChHHHHHH-HHHHhccCChHHhHHHHHHHHH-HHHHHHHHHHHHHhhh
Q 017939 311 NKNVLEVAKI-TGEEWKNMTEEQKRPYEEIAKK-NKEKYNEEMEAYKRRM 358 (363)
Q Consensus 311 ~p~~~ei~k~-l~~~Wk~Ls~eEK~~Y~~~Ae~-~ke~Y~~E~~~yk~~~ 358 (363)
+.++..+++. +|..|+.+|+++++.|.+.... +...|-..+..|..+.
T Consensus 71 ~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~q~ 120 (211)
T 2qgu_A 71 RADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRNQT 120 (211)
T ss_dssp GBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCE
T ss_pred hcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 3466666554 5899999999999999988877 4566887787776543
No 83
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=27.98 E-value=2.4e+02 Score=22.75 Aligned_cols=58 Identities=26% Similarity=0.381 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHhhhhHHHhhhhHHH--------HHhhh---HHHHHHHHHHHHHh
Q 017939 83 SFDKDLQEMQEMLEKMKLEKEKTEELLKEKDEMLKMKEEE--------LELQG---KEQEKLHMELKKLQ 141 (363)
Q Consensus 83 ~~~~~~~~~~~~l~~~~~~~e~~e~~~~e~~~~l~~k~~e--------~~~~~---~~~~~lq~~l~k~r 141 (363)
+.++-|.+++....+|+.+.++.++.+ |+-.+|+.+-+. ..-++ .+.+.|+..|..++
T Consensus 35 ~AEeaL~~Kq~~idelk~ei~q~~~~l-E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 35 QAEEALVAKQELIDKLKEEAEQHKIVM-ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHH
Confidence 444555555555555555444433322 445555555432 22222 23556777776664
No 84
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=25.42 E-value=91 Score=19.78 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhh
Q 017939 84 FDKDLQEMQEMLEKMKLEKEKTEELLK 110 (363)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~e~~e~~~~ 110 (363)
|++.++++-..-..|..|=+...+|+.
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 334444444444444333334444433
No 85
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.71 E-value=53 Score=19.40 Aligned_cols=14 Identities=50% Similarity=0.674 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhh
Q 017939 129 EQEKLHMELKKLQK 142 (363)
Q Consensus 129 ~~~~lq~~l~k~r~ 142 (363)
+.+-||..|+++|.
T Consensus 9 eledlqerlrklrk 22 (27)
T 3twe_A 9 ELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46677888888764
No 86
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=23.05 E-value=1.9e+02 Score=23.06 Aligned_cols=58 Identities=22% Similarity=0.403 Sum_probs=45.0
Q ss_pred ccHHHHHHHHhhCCChHHHHHHHHHHhccCChHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017939 299 FSSERRAALLADNKNVLEVAKITGEEWKNMTEEQKRPYEEIAKKNKEKYNEEMEAYKRRM 358 (363)
Q Consensus 299 F~~e~r~~~~~e~p~~~ei~k~l~~~Wk~Ls~eEK~~Y~~~Ae~~ke~Y~~E~~~yk~~~ 358 (363)
|+.+++.-+...|.+..++...|.+.|..+..-|=+.|.-.....+..| ++.+...+.
T Consensus 29 iLaER~kpL~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~y--EI~eL~~rV 86 (106)
T 1j1d_B 29 ILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKY--EINVLRNRI 86 (106)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhH--HHHHHHHHH
Confidence 7778887777778888889999999999998888888988777777777 455554443
No 87
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=22.38 E-value=2.8e+02 Score=21.57 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=34.6
Q ss_pred CcHHHHHHHHHHHHHHhhhhhHHHHHHhhhhHHHhhhhHHHHHhhhHHHHHHH
Q 017939 82 TSFDKDLQEMQEMLEKMKLEKEKTEELLKEKDEMLKMKEEELELQGKEQEKLH 134 (363)
Q Consensus 82 ~~~~~~~~~~~~~l~~~~~~~e~~e~~~~e~~~~l~~k~~e~~~~~~~~~~lq 134 (363)
.-++.+|..|+.++..+..+-+++++-|.+=-..|+..+.-...-+-+-..|.
T Consensus 40 ~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~ 92 (101)
T 3u1c_A 40 KQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLN 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999888888887776555555555443333333333333
No 88
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=20.94 E-value=1.4e+02 Score=21.01 Aligned_cols=10 Identities=50% Similarity=0.604 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 017939 130 QEKLHMELKK 139 (363)
Q Consensus 130 ~~~lq~~l~k 139 (363)
-.+|..+|++
T Consensus 57 vkkleeeikk 66 (67)
T 1lq7_A 57 VKKLEEEIKK 66 (67)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 4455555544
Done!