Query 017940
Match_columns 363
No_of_seqs 187 out of 2016
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 07:22:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.1 1.5E-10 5E-15 91.6 6.0 70 257-326 35-105 (137)
2 3b5d_A Multidrug transporter E 98.7 1.5E-07 5E-12 71.8 10.3 100 9-151 3-103 (110)
3 3b5d_A Multidrug transporter E 98.7 5.7E-08 2E-12 74.0 7.9 70 257-326 35-105 (110)
4 2i68_A Protein EMRE; transmemb 98.7 3.1E-08 1.1E-12 78.2 6.4 70 77-152 34-104 (137)
5 3rko_J NADH-quinone oxidoreduc 61.1 64 0.0022 26.1 12.2 32 293-324 127-160 (184)
6 2jo1_A Phospholemman; FXYD1, N 45.3 7 0.00024 26.0 0.9 18 309-326 22-39 (72)
7 2zxe_G FXYD10, phospholemman-l 44.0 12 0.00043 25.0 2.0 20 309-328 25-44 (74)
8 3l1l_A Arginine/agmatine antip 37.0 60 0.002 29.7 6.4 23 307-329 409-431 (445)
9 1pw4_A Glycerol-3-phosphate tr 35.5 2.4E+02 0.0082 25.1 23.1 20 107-126 193-212 (451)
10 2jp3_A FXYD domain-containing 27.4 26 0.00088 23.0 1.4 20 309-328 23-42 (67)
11 4djk_A Probable glutamate/gamm 24.6 4.1E+02 0.014 24.4 10.6 14 310-323 450-463 (511)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.07 E-value=1.5e-10 Score=91.62 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhhhhcccCCcchhhhh-hhhHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHhhhheecc
Q 017940 257 AGIVGSGLCYVGLTWCVKKKGPVFTAAF-SPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK 326 (363)
Q Consensus 257 ~g~~~~~~~~~~~~~a~~~~~a~~~s~~-~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 326 (363)
+++++++++|.++.+++++.+++.+..+ ..+.|+++.+++++++||++++.+++|++++++|+++.+..+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5566788999999999999999999998 899999999999999999999999999999999999997644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.68 E-value=1.5e-07 Score=71.75 Aligned_cols=100 Identities=16% Similarity=0.275 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHHHHHHHH
Q 017940 9 PLIAMIAVEFGFATVNIFLKKVLEEGMNELVFITCRLLVATILLAPIGYFWERNSRPKLTLRILFCLFFSAIVGTSLTQY 88 (363)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (363)
.+++++++.++-.......|.. + +.. +.+. .+.+++...+++.
T Consensus 3 ~~l~l~~a~~~e~~~~~~lK~s-~-~~~---------------------------------~~~~--~~~~~~~~~~~~~ 45 (110)
T 3b5d_A 3 PYIYLGGAILAEVIGTTLMKFS-E-GFT---------------------------------RLWP--SVGTIICYCASFW 45 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-c-Ccc---------------------------------hHHH--HHHHHHHHHHHHH
Confidence 5677777777777777777753 1 110 1111 2455566789999
Q ss_pred HHHHHhhccCccchhhh-cchhhHHHHHHHHHhCccccccccccCccceehhhHHHHhHHHhhh
Q 017940 89 FFLLGIQYTSATFACAF-INMVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTL 151 (363)
Q Consensus 89 ~~~~al~~~~~~~~~ii-~~~~pv~~~lla~l~~~e~~~~~~~~~~~~~~gi~~~~~Gv~l~~~ 151 (363)
++..++++.|.+.+..+ .++.|+++.+++++++||+++..+ ++|+.+++.|+.++..
T Consensus 46 ~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 99999999999999888 799999999999999999999999 9999999999999875
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.68 E-value=5.7e-08 Score=74.04 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhhhhcccCCcchhhhh-hhhHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHhhhheecc
Q 017940 257 AGIVGSGLCYVGLTWCVKKKGPVFTAAF-SPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLYILLWGK 326 (363)
Q Consensus 257 ~g~~~~~~~~~~~~~a~~~~~a~~~s~~-~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 326 (363)
.++++.+.++.++.+++++.+.+.+..+ ..+.|+.+.+++++++||++++.+++|+.+++.|+++....+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4455677899999999999999999888 899999999999999999999999999999999999987644
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.67 E-value=3.1e-08 Score=78.23 Aligned_cols=70 Identities=14% Similarity=0.314 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCccchhhh-cchhhHHHHHHHHHhCccccccccccCccceehhhHHHHhHHHhhhh
Q 017940 77 FSAIVGTSLTQYFFLLGIQYTSATFACAF-INMVPVITFVIALPFGLETVDIKGISGKAKVVGTLVCIGGAMLLTLY 152 (363)
Q Consensus 77 ~~g~~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pv~~~lla~l~~~e~~~~~~~~~~~~~~gi~~~~~Gv~l~~~~ 152 (363)
+.+++.+.+++.++..++++++++.+..+ .++.|+++.++++++++|+++..+ ++|+++++.|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhcC
Confidence 45666678999999999999999999998 899999999999999999999999 99999999999999764
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=61.13 E-value=64 Score=26.06 Aligned_cols=32 Identities=9% Similarity=-0.044 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHH--Hhhhhee
Q 017940 293 AMFDIPLLHERLHIGSLLGSITVII--GLYILLW 324 (363)
Q Consensus 293 ~~~~~~~~~e~~~~~~~~G~~li~~--g~~l~~~ 324 (363)
--+|..++++..-+.+..+.+|.++ |.+...+
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLar 160 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR 160 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577888999999999999887644 4444443
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=45.26 E-value=7 Score=25.95 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhheecc
Q 017940 309 LLGSITVIIGLYILLWGK 326 (363)
Q Consensus 309 ~~G~~li~~g~~l~~~~~ 326 (363)
++++++.++|++++...+
T Consensus 22 ifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 456667777777776544
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=43.97 E-value=12 Score=25.01 Aligned_cols=20 Identities=35% Similarity=0.715 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhhheecccc
Q 017940 309 LLGSITVIIGLYILLWGKNK 328 (363)
Q Consensus 309 ~~G~~li~~g~~l~~~~~~~ 328 (363)
++++++.++|++++..+|-|
T Consensus 25 ifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC--
T ss_pred hhHHHHHHHHHHHHHcCccc
Confidence 45677778888887765544
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=37.00 E-value=60 Score=29.71 Aligned_cols=23 Identities=9% Similarity=0.082 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHhhhheeccccc
Q 017940 307 GSLLGSITVIIGLYILLWGKNKE 329 (363)
Q Consensus 307 ~~~~G~~li~~g~~l~~~~~~~~ 329 (363)
..+.|..+++.|+.++.+.++|+
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 34567888888888776655443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=35.49 E-value=2.4e+02 Score=25.10 Aligned_cols=20 Identities=10% Similarity=0.217 Sum_probs=10.8
Q ss_pred chhhHHHHHHHHHhCccccc
Q 017940 107 NMVPVITFVIALPFGLETVD 126 (363)
Q Consensus 107 ~~~pv~~~lla~l~~~e~~~ 126 (363)
....+...++..++.+|+..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 193 AFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHhhccCCHh
Confidence 33344445555666776554
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=27.41 E-value=26 Score=23.05 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhheecccc
Q 017940 309 LLGSITVIIGLYILLWGKNK 328 (363)
Q Consensus 309 ~~G~~li~~g~~l~~~~~~~ 328 (363)
++++++.++|++++...+-|
T Consensus 23 ifA~vLfi~GI~iilS~kcr 42 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSGKCK 42 (67)
T ss_dssp HHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHHHHHHcCccc
Confidence 45667777788777655433
No 11
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=24.64 E-value=4.1e+02 Score=24.40 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhhhe
Q 017940 310 LGSITVIIGLYILL 323 (363)
Q Consensus 310 ~G~~li~~g~~l~~ 323 (363)
.+..+++.++..+.
T Consensus 450 ~~~~~~~~~i~~~~ 463 (511)
T 4djk_A 450 VVSFLVVLALPFIL 463 (511)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
Done!