Query 017940
Match_columns 363
No_of_seqs 187 out of 2016
Neff 9.4
Searched_HMMs 13730
Date Mon Mar 25 07:22:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017940.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017940hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 78.4 18 0.0013 30.5 23.7 19 106-124 189-207 (447)
2 d1iwga8 f.35.1.1 (A:513-566,A: 35.9 86 0.0062 23.9 10.8 29 290-318 95-123 (222)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 30.7 1.3E+02 0.0096 24.4 13.4 19 193-211 68-86 (447)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 27.9 31 0.0022 16.4 2.6 17 185-201 3-19 (27)
5 d1u7ga_ f.44.1.1 (A:) Ammonium 18.2 2.5E+02 0.018 23.2 17.7 50 186-237 282-332 (383)
6 d1iwga7 f.35.1.1 (A:7-37,A:331 17.4 1E+02 0.0076 22.9 5.7 48 273-320 60-107 (199)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 14.7 85 0.0062 16.2 3.9 18 184-201 18-35 (37)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 13.5 79 0.0058 15.2 2.9 17 289-305 12-28 (30)
9 d2nr9a1 f.51.1.1 (A:4-192) Glp 5.5 4.8E+02 0.035 18.3 9.6 17 185-201 164-180 (189)
10 d1fftb2 f.17.2.1 (B:27-117) Cy 5.4 54 0.0039 21.2 -0.4 17 312-328 28-44 (91)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=78.40 E-value=18 Score=30.47 Aligned_cols=19 Identities=11% Similarity=0.198 Sum_probs=9.5
Q ss_pred cchhhHHHHHHHHHhCccc
Q 017940 106 INMVPVITFVIALPFGLET 124 (363)
Q Consensus 106 ~~~~pv~~~lla~l~~~e~ 124 (363)
.....+...++.+++.+|+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 189 PAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHHHHHHHHCCCS
T ss_pred hhhhHHHHHHHHHHhcccc
Confidence 3344445555555555544
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=35.94 E-value=86 Score=23.89 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHH
Q 017940 290 IMAAMFDIPLLHERLHIGSLLGSITVIIG 318 (363)
Q Consensus 290 v~~~~~~~~~~~e~~~~~~~~G~~li~~g 318 (363)
+.+.+.+..+.+.+++....+|.++.+.-
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 34555666678999999988887775553
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=30.68 E-value=1.3e+02 Score=24.42 Aligned_cols=19 Identities=11% Similarity=-0.027 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhhhccC
Q 017940 193 GTLLWASWFPIQSYIGKRY 211 (363)
Q Consensus 193 a~~~~a~~~i~~k~~~~~~ 211 (363)
..+.+++.....-++.++.
T Consensus 68 ~~~~~~~~~~~~G~l~Dr~ 86 (447)
T d1pw4a_ 68 ISIAYGFSKFIMGSVSDRS 86 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3444455555555555554
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=27.94 E-value=31 Score=16.42 Aligned_cols=17 Identities=29% Similarity=0.624 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHH
Q 017940 185 FGTIALTVGTLLWASWF 201 (363)
Q Consensus 185 ~G~~~~l~a~~~~a~~~ 201 (363)
.|.++.-+++++||.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 68888889999998873
No 5
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=18.23 E-value=2.5e+02 Score=23.23 Aligned_cols=50 Identities=10% Similarity=0.042 Sum_probs=28.5
Q ss_pred hHHHHHHHHHH-HHHHHHHHHhhhccCCCchhHHHHHHHHHHHHHHHHHHHhc
Q 017940 186 GTIALTVGTLL-WASWFPIQSYIGKRYPCKYSSTAILSLFGAIQAAILCLATN 237 (363)
Q Consensus 186 G~~~~l~a~~~-~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (363)
..++..++++. +-.+..+.+|+ +.+||..........+..-.+...++..
T Consensus 282 A~~iG~i~g~i~~~~~~~l~~~~--~iDD~~~~~~vHg~~Gi~G~l~~glfa~ 332 (383)
T d1u7ga_ 282 ALIIGVVAGLAGLWGVTMLKRLL--RVDDPCDVFGVHGVCGIVGCIMTGIFAA 332 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--CSCCGGGHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhccHHHHHHHHHHHhhc--ccccccceEeehhhhHHHHHHHHHHhcC
Confidence 34555554443 33333333333 2358888888887777776666666543
No 6
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=17.43 E-value=1e+02 Score=22.87 Aligned_cols=48 Identities=8% Similarity=0.101 Sum_probs=30.7
Q ss_pred cccCCcchhhhhhhhHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHhh
Q 017940 273 VKKKGPVFTAAFSPLVQIMAAMFDIPLLHERLHIGSLLGSITVIIGLY 320 (363)
Q Consensus 273 ~~~~~a~~~s~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~ 320 (363)
.+...+.....+...-.+...+....++|..++.....+..+.+....
T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~v 107 (199)
T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLV 107 (199)
T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHH
T ss_pred HhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhc
Confidence 344445555555555555566666677899999888777766665544
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.73 E-value=85 Score=16.20 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 017940 184 TFGTIALTVGTLLWASWF 201 (363)
Q Consensus 184 ~~G~~~~l~a~~~~a~~~ 201 (363)
.+|.++.+.-++.++.|.
T Consensus 18 y~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 467777777777777664
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.46 E-value=79 Score=15.19 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhCCCCc
Q 017940 289 QIMAAMFDIPLLHERLH 305 (363)
Q Consensus 289 pv~~~~~~~~~~~e~~~ 305 (363)
-+++.++-.++++|+|.
T Consensus 12 c~i~lfffaiffreppr 28 (30)
T d2axtt1 12 CIIALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 34455555566777764
No 9
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=5.52 E-value=4.8e+02 Score=18.35 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHH
Q 017940 185 FGTIALTVGTLLWASWF 201 (363)
Q Consensus 185 ~G~~~~l~a~~~~a~~~ 201 (363)
.+.+..+++++.++...
T Consensus 164 ~aHl~G~l~G~~~g~~~ 180 (189)
T d2nr9a1 164 AAHISGLIVGLIWGFID 180 (189)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67788888888876543
No 10
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.43 E-value=54 Score=21.24 Aligned_cols=17 Identities=12% Similarity=-0.062 Sum_probs=8.3
Q ss_pred HHHHHHHhhhheecccc
Q 017940 312 SITVIIGLYILLWGKNK 328 (363)
Q Consensus 312 ~~li~~g~~l~~~~~~~ 328 (363)
+.+++.|.+++...|.|
T Consensus 28 v~v~V~~~~~~~~~ryR 44 (91)
T d1fftb2 28 VVIPAILMAVGFAWKYR 44 (91)
T ss_dssp TTTHHHHHHHTTTTTTT
T ss_pred HHHHHHHHHHhhheeee
Confidence 34445555555544443
Done!