Query 017943
Match_columns 363
No_of_seqs 216 out of 1991
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:47:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00124 adenosine deaminase; 100.0 3.4E-72 7.4E-77 542.3 35.8 320 2-354 30-361 (362)
2 cd01321 ADGF Adenosine deamina 100.0 2.1E-69 4.6E-74 521.8 34.4 305 1-356 18-343 (345)
3 PF00962 A_deaminase: Adenosin 100.0 7.3E-67 1.6E-71 504.3 29.0 315 6-352 1-330 (331)
4 KOG1097 Adenine deaminase/aden 100.0 6.9E-66 1.5E-70 489.0 32.9 328 2-361 41-390 (399)
5 PRK09358 adenosine deaminase; 100.0 7.3E-65 1.6E-69 492.1 37.2 327 1-359 4-339 (340)
6 cd00443 ADA_AMPD Adenosine/AMP 100.0 3E-65 6.5E-70 487.2 33.7 293 7-353 1-304 (305)
7 COG1816 Add Adenosine deaminas 100.0 4.4E-65 9.6E-70 483.7 32.2 329 2-362 6-345 (345)
8 TIGR01430 aden_deam adenosine 100.0 6.2E-62 1.3E-66 468.7 36.5 316 7-354 1-324 (324)
9 cd01320 ADA Adenosine deaminas 100.0 3.7E-58 7.9E-63 442.6 36.3 317 6-354 1-325 (325)
10 TIGR01431 adm_rel adenosine de 100.0 2E-58 4.4E-63 460.3 35.4 332 2-360 72-473 (479)
11 cd01319 AMPD AMP deaminase (AM 100.0 4.6E-33 1E-37 276.3 22.1 311 4-354 55-464 (496)
12 PLN03055 AMP deaminase; Provis 100.0 3.1E-31 6.8E-36 266.1 23.8 309 5-353 146-553 (602)
13 TIGR01429 AMP_deaminase AMP de 100.0 2.6E-31 5.6E-36 267.6 21.7 243 72-353 273-575 (611)
14 PLN02768 AMP deaminase 100.0 1.2E-30 2.6E-35 265.8 21.4 309 5-353 379-786 (835)
15 PTZ00310 AMP deaminase; Provis 100.0 8E-29 1.7E-33 264.7 19.9 309 5-352 842-1245(1453)
16 TIGR01224 hutI imidazoloneprop 99.9 2.6E-25 5.7E-30 218.2 27.4 236 69-344 88-335 (377)
17 PTZ00310 AMP deaminase; Provis 99.9 1.3E-25 2.8E-30 240.4 24.0 135 219-355 480-619 (1453)
18 cd01296 Imidazolone-5PH Imidaz 99.9 1.5E-23 3.4E-28 205.2 27.1 234 69-344 85-331 (371)
19 PRK06886 hypothetical protein; 99.9 2.3E-22 4.9E-27 192.9 23.2 281 6-343 19-328 (329)
20 PRK09230 cytosine deaminase; P 99.9 1.3E-22 2.8E-27 202.2 22.3 277 7-344 54-365 (426)
21 PRK07213 chlorohydrolase; Prov 99.9 5.6E-21 1.2E-25 187.6 23.9 222 69-343 91-326 (375)
22 cd01305 archeal_chlorohydrolas 99.9 7E-21 1.5E-25 178.1 23.2 208 70-338 46-262 (263)
23 PRK08393 N-ethylammeline chlor 99.9 1.1E-19 2.5E-24 181.2 25.1 262 7-343 53-347 (424)
24 cd01312 Met_dep_hydrolase_D Me 99.8 2E-18 4.4E-23 169.7 27.9 259 7-342 30-335 (381)
25 TIGR03314 Se_ssnA putative sel 99.8 9.8E-19 2.1E-23 175.3 25.5 241 52-340 83-354 (441)
26 PRK06687 chlorohydrolase; Vali 99.8 1.3E-18 2.9E-23 173.2 25.7 268 7-344 57-355 (419)
27 PRK09356 imidazolonepropionase 99.8 8.6E-18 1.9E-22 166.6 29.0 237 69-344 113-361 (406)
28 PRK09228 guanine deaminase; Pr 99.8 8.1E-18 1.7E-22 168.3 28.1 267 7-344 69-369 (433)
29 PRK15493 5-methylthioadenosine 99.8 4.7E-18 1E-22 170.1 26.1 227 70-343 98-355 (435)
30 PRK07203 putative chlorohydrol 99.8 3.8E-18 8.3E-23 171.1 24.7 226 69-341 101-356 (442)
31 cd01313 Met_dep_hydrolase_E Me 99.8 1.5E-17 3.3E-22 165.6 27.3 249 53-343 69-367 (418)
32 cd01298 ATZ_TRZ_like TRZ/ATZ f 99.8 9.7E-18 2.1E-22 165.9 25.7 240 53-343 78-352 (411)
33 cd01303 GDEase Guanine deamina 99.8 2.1E-17 4.7E-22 165.1 28.2 268 7-344 64-372 (429)
34 PRK08418 chlorohydrolase; Prov 99.8 1.4E-17 3.1E-22 165.2 26.7 141 198-342 183-358 (408)
35 TIGR02022 hutF formiminoglutam 99.8 2.8E-17 6.1E-22 165.4 27.6 248 53-342 78-376 (455)
36 PRK06380 metal-dependent hydro 99.8 3.9E-17 8.4E-22 162.7 26.4 260 7-342 53-344 (418)
37 PRK12393 amidohydrolase; Provi 99.8 4E-17 8.6E-22 164.4 26.5 273 7-343 58-375 (457)
38 TIGR02967 guan_deamin guanine 99.8 4.5E-17 9.7E-22 161.3 26.3 142 199-344 180-344 (401)
39 PRK08204 hypothetical protein; 99.8 4.3E-17 9.4E-22 163.7 26.2 148 192-344 189-363 (449)
40 PRK06038 N-ethylammeline chlor 99.8 7.3E-17 1.6E-21 161.3 26.2 141 199-343 184-348 (430)
41 PRK09229 N-formimino-L-glutama 99.8 1.2E-16 2.6E-21 160.9 27.5 247 53-342 78-376 (456)
42 PRK08203 hydroxydechloroatrazi 99.8 1.6E-16 3.4E-21 159.9 27.5 151 189-343 197-371 (451)
43 cd01293 Bact_CD Bacterial cyto 99.8 2.2E-17 4.8E-22 162.5 20.2 237 68-342 88-357 (398)
44 cd01292 metallo-dependent_hydr 99.8 1.3E-16 2.8E-21 147.4 23.2 235 67-338 26-274 (275)
45 COG0402 SsnA Cytosine deaminas 99.7 2.7E-16 6E-21 156.7 24.1 241 54-342 80-355 (421)
46 PRK09045 N-ethylammeline chlor 99.7 6.3E-16 1.4E-20 155.1 26.1 142 199-344 196-361 (443)
47 PRK14085 imidazolonepropionase 99.7 9.8E-16 2.1E-20 150.9 24.9 147 193-343 195-344 (382)
48 PRK07572 cytosine deaminase; V 99.7 1.1E-15 2.3E-20 152.8 21.2 277 7-343 50-360 (426)
49 KOG1096 Adenosine monophosphat 99.7 2.8E-16 6.1E-21 156.6 15.7 309 4-352 314-722 (768)
50 PRK07583 cytosine deaminase-li 99.7 5.2E-15 1.1E-19 148.3 24.6 235 70-343 116-380 (438)
51 PRK07228 N-ethylammeline chlor 99.7 4.6E-14 1E-18 141.7 26.7 141 200-344 194-358 (445)
52 KOG3968 Atrazine chlorohydrola 99.6 1.2E-14 2.7E-19 139.0 17.7 237 54-344 97-379 (439)
53 PRK05985 cytosine deaminase; P 99.6 3.9E-13 8.5E-18 132.8 23.0 232 68-343 90-347 (391)
54 PRK06151 N-ethylammeline chlor 99.6 6.2E-13 1.3E-17 135.1 23.1 139 198-343 214-384 (488)
55 PRK06846 putative deaminase; V 99.5 6.9E-12 1.5E-16 124.7 24.1 210 72-328 110-342 (410)
56 cd01299 Met_dep_hydrolase_A Me 99.5 7.2E-13 1.6E-17 128.3 15.7 169 171-344 118-315 (342)
57 COG1228 HutI Imidazolonepropio 99.3 1.3E-10 2.8E-15 114.9 17.4 137 201-344 216-357 (406)
58 cd01300 YtcJ_like YtcJ_like me 99.2 1.9E-09 4E-14 109.4 23.1 142 202-344 292-464 (479)
59 cd01309 Met_dep_hydrolase_C Me 98.7 1.1E-07 2.4E-12 93.0 11.9 133 206-344 181-321 (359)
60 cd01306 PhnM PhnM is believed 98.7 9.9E-07 2.1E-11 84.9 16.6 132 203-343 161-293 (325)
61 PRK12394 putative metallo-depe 98.5 4.6E-06 9.9E-11 82.2 17.3 131 202-343 170-321 (379)
62 PF07969 Amidohydro_3: Amidohy 98.5 3.7E-06 7.9E-11 83.2 16.3 148 192-344 213-389 (404)
63 PRK15446 phosphonate metabolis 98.4 3.9E-06 8.5E-11 82.9 14.2 133 202-343 211-344 (383)
64 COG1574 Predicted metal-depend 98.2 1E-05 2.2E-10 82.6 12.1 137 202-342 318-486 (535)
65 PF01979 Amidohydro_1: Amidohy 98.1 2.1E-06 4.5E-11 82.2 4.3 136 199-344 138-316 (333)
66 PLN02942 dihydropyrimidinase 98.0 0.0012 2.5E-08 67.5 22.7 143 201-344 163-383 (486)
67 TIGR02318 phosphono_phnM phosp 98.0 8.1E-05 1.8E-09 73.4 13.0 132 204-343 208-340 (376)
68 TIGR00010 hydrolase, TatD fami 98.0 0.003 6.4E-08 58.1 22.5 143 188-339 84-249 (252)
69 TIGR02033 D-hydantoinase D-hyd 98.0 0.00032 7E-09 70.6 16.5 141 200-344 158-379 (454)
70 cd01314 D-HYD D-hydantoinases 97.8 0.00036 7.7E-09 70.2 14.2 143 200-343 157-376 (447)
71 cd01307 Met_dep_hydrolase_B Me 97.8 0.0014 3E-08 63.5 17.1 148 186-342 127-296 (338)
72 cd00530 PTE Phosphotriesterase 97.8 0.00034 7.4E-09 66.2 12.6 133 205-337 136-290 (293)
73 TIGR01975 isoAsp_dipep isoaspa 97.7 0.00049 1.1E-08 68.1 13.4 152 189-343 151-344 (389)
74 cd01297 D-aminoacylase D-amino 97.7 0.0015 3.3E-08 65.2 17.0 164 171-343 162-355 (415)
75 cd00854 NagA N-acetylglucosami 97.7 0.0032 7E-08 62.0 17.9 156 176-344 175-345 (374)
76 cd01310 TatD_DNAse TatD like p 97.6 0.0034 7.4E-08 57.6 16.5 126 205-339 108-249 (251)
77 COG1099 Predicted metal-depend 97.6 0.0098 2.1E-07 53.5 17.9 173 154-338 60-249 (254)
78 PRK09237 dihydroorotase; Provi 97.6 0.0027 5.9E-08 62.5 15.7 147 188-343 148-316 (380)
79 PRK08323 phenylhydantoinase; V 97.5 0.0012 2.6E-08 66.6 12.8 141 200-343 155-376 (459)
80 PRK10657 isoaspartyl dipeptida 97.5 0.0012 2.5E-08 65.2 12.3 141 201-344 167-344 (388)
81 PRK13207 ureC urease subunit a 97.5 0.0016 3.5E-08 66.9 13.4 155 189-344 213-420 (568)
82 cd01295 AdeC Adenine deaminase 97.5 0.0033 7.3E-08 62.9 15.2 144 188-342 102-254 (422)
83 PRK09357 pyrC dihydroorotase; 97.5 0.02 4.4E-07 57.2 20.7 154 188-344 143-365 (423)
84 PRK10812 putative DNAse; Provi 97.4 0.061 1.3E-06 50.4 21.9 131 205-344 111-258 (265)
85 PRK06740 histidinol-phosphatas 96.9 0.17 3.8E-06 49.0 19.6 69 254-325 243-316 (331)
86 PRK09875 putative hydrolase; P 96.4 0.12 2.6E-06 49.2 14.7 132 205-338 139-289 (292)
87 TIGR00857 pyrC_multi dihydroor 96.4 0.84 1.8E-05 45.5 21.6 179 158-343 103-351 (411)
88 TIGR03178 allantoinase allanto 96.4 0.25 5.3E-06 49.8 17.7 131 204-343 215-370 (443)
89 PRK11449 putative deoxyribonuc 96.3 0.34 7.5E-06 45.2 17.1 125 205-339 114-255 (258)
90 PRK13206 ureC urease subunit a 96.3 0.077 1.7E-06 54.7 13.4 156 188-344 218-425 (573)
91 PRK09236 dihydroorotase; Revie 96.2 0.036 7.8E-07 55.9 10.8 128 206-343 217-368 (444)
92 cd01317 DHOase_IIa Dihydroorot 96.1 0.02 4.4E-07 56.3 8.1 130 205-343 172-325 (374)
93 PRK13309 ureC urease subunit a 96.1 0.091 2E-06 54.3 12.7 156 189-345 217-425 (572)
94 TIGR01792 urease_alph urease, 96.0 0.08 1.7E-06 54.7 12.1 154 189-344 212-419 (567)
95 PRK10425 DNase TatD; Provision 95.9 1.5 3.2E-05 40.9 22.0 125 205-338 108-254 (258)
96 COG3964 Predicted amidohydrola 95.9 0.23 5E-06 46.9 13.2 148 186-343 150-320 (386)
97 PRK13985 ureB urease subunit b 95.7 0.21 4.6E-06 51.3 13.4 155 189-344 213-420 (568)
98 cd00375 Urease_alpha Urease al 95.6 0.31 6.7E-06 50.2 14.1 155 189-344 213-420 (567)
99 TIGR03217 4OH_2_O_val_ald 4-hy 95.6 0.67 1.4E-05 45.0 15.9 168 156-334 126-312 (333)
100 TIGR01178 ade adenine deaminas 95.5 0.086 1.9E-06 54.7 10.2 148 188-344 143-297 (552)
101 PRK08195 4-hyroxy-2-oxovalerat 95.5 0.73 1.6E-05 44.8 15.8 106 156-264 127-246 (337)
102 PF13147 Amidohydro_4: Amidohy 95.3 0.029 6.3E-07 51.7 5.2 77 263-343 209-289 (304)
103 PF01026 TatD_DNase: TatD rela 95.2 0.13 2.8E-06 47.8 9.4 123 205-337 111-251 (255)
104 COG0084 TatD Mg-dependent DNas 95.0 2.5 5.4E-05 39.4 17.1 125 205-339 112-252 (256)
105 TIGR03583 EF_0837 probable ami 94.9 1.7 3.7E-05 42.4 16.7 129 204-343 165-313 (365)
106 cd07948 DRE_TIM_HCS Saccharomy 94.8 2.2 4.7E-05 40.0 16.3 132 81-246 76-214 (262)
107 PRK12857 fructose-1,6-bisphosp 94.7 1.3 2.8E-05 41.9 14.8 189 171-360 27-249 (284)
108 cd00947 TBP_aldolase_IIB Tagat 94.7 1.6 3.4E-05 41.2 15.2 187 170-360 21-243 (276)
109 cd07939 DRE_TIM_NifV Streptomy 94.7 2.2 4.8E-05 39.7 16.2 132 81-245 74-211 (259)
110 PRK13308 ureC urease subunit a 94.6 0.57 1.2E-05 48.4 12.8 155 189-344 213-421 (569)
111 PRK09195 gatY tagatose-bisphos 94.6 0.96 2.1E-05 42.8 13.4 186 170-359 26-248 (284)
112 PRK05692 hydroxymethylglutaryl 94.4 3 6.5E-05 39.6 16.6 186 17-245 20-228 (287)
113 PRK06361 hypothetical protein; 94.3 0.14 3E-06 46.1 6.9 93 236-333 107-200 (212)
114 PRK06189 allantoinase; Provisi 94.3 0.23 5E-06 50.1 9.2 128 204-343 218-373 (451)
115 PRK09061 D-glutamate deacylase 94.0 4.4 9.5E-05 41.7 17.9 101 171-272 164-286 (509)
116 cd03174 DRE_TIM_metallolyase D 93.9 3.6 7.8E-05 37.9 16.0 207 15-263 11-246 (265)
117 PRK11858 aksA trans-homoaconit 93.9 3.2 6.9E-05 41.0 16.2 131 81-245 80-217 (378)
118 PRK00912 ribonuclease P protei 93.8 0.92 2E-05 41.6 11.4 98 236-333 97-206 (237)
119 PRK07114 keto-hydroxyglutarate 93.6 4.5 9.7E-05 36.9 15.3 97 197-302 91-190 (222)
120 PF02126 PTE: Phosphotriestera 93.5 0.27 6E-06 47.1 7.6 150 189-338 125-305 (308)
121 TIGR02090 LEU1_arch isopropylm 93.4 4.6 9.9E-05 39.6 16.2 134 79-246 74-214 (363)
122 TIGR01496 DHPS dihydropteroate 93.4 0.96 2.1E-05 42.2 10.9 97 170-272 20-127 (257)
123 cd01315 L-HYD_ALN L-Hydantoina 93.3 1.2 2.6E-05 44.7 12.3 142 202-343 159-373 (447)
124 TIGR00167 cbbA ketose-bisphosp 93.2 4.2 9.1E-05 38.6 15.1 186 171-359 27-252 (288)
125 cd07940 DRE_TIM_IPMS 2-isoprop 93.2 6 0.00013 37.0 16.1 149 82-263 75-245 (268)
126 cd07938 DRE_TIM_HMGL 3-hydroxy 93.2 7.3 0.00016 36.7 16.7 131 82-246 79-223 (274)
127 PRK08609 hypothetical protein; 93.0 8.3 0.00018 40.3 18.2 74 253-331 482-555 (570)
128 cd07945 DRE_TIM_CMS Leptospira 92.9 6.4 0.00014 37.2 15.7 132 81-246 79-221 (280)
129 PRK07575 dihydroorotase; Provi 92.7 0.47 1E-05 47.7 8.4 127 205-343 212-362 (438)
130 cd01302 Cyclic_amidohydrolases 92.6 4.1 9E-05 39.4 14.5 136 203-344 113-288 (337)
131 PRK12738 kbaY tagatose-bisphos 92.5 5.6 0.00012 37.7 14.7 189 170-359 26-248 (286)
132 PRK07328 histidinol-phosphatas 92.2 0.45 9.8E-06 44.6 7.1 70 253-325 180-253 (269)
133 PF01081 Aldolase: KDPG and KH 92.1 2.1 4.6E-05 38.3 10.8 90 202-302 85-178 (196)
134 TIGR02660 nifV_homocitr homoci 92.0 7.1 0.00015 38.3 15.4 132 81-245 77-214 (365)
135 PLN02303 urease 91.9 1.6 3.5E-05 46.9 11.3 154 189-345 482-690 (837)
136 PRK14042 pyruvate carboxylase 91.9 6.3 0.00014 41.3 15.5 185 16-246 19-227 (596)
137 PRK06801 hypothetical protein; 91.8 12 0.00026 35.5 16.2 186 170-359 26-249 (286)
138 PF00682 HMGL-like: HMGL-like 91.8 7.4 0.00016 35.4 14.5 190 17-246 8-211 (237)
139 PRK14041 oxaloacetate decarbox 91.7 4 8.7E-05 41.5 13.6 145 76-264 95-253 (467)
140 PRK08185 hypothetical protein; 91.7 10 0.00022 36.0 15.4 186 170-359 21-244 (283)
141 PRK08392 hypothetical protein; 91.5 0.45 9.7E-06 43.1 6.0 70 253-330 140-210 (215)
142 PRK12331 oxaloacetate decarbox 91.5 11 0.00024 38.1 16.4 145 77-265 97-255 (448)
143 cd01294 DHOase Dihydroorotase 91.5 10 0.00022 36.5 15.9 140 204-344 112-299 (335)
144 PRK06552 keto-hydroxyglutarate 91.5 4.5 9.7E-05 36.7 12.4 92 200-302 91-185 (213)
145 cd07941 DRE_TIM_LeuA3 Desulfob 91.5 11 0.00024 35.3 15.7 132 81-246 83-225 (273)
146 TIGR01182 eda Entner-Doudoroff 91.5 4.7 0.0001 36.3 12.4 89 203-302 86-178 (204)
147 cd01308 Isoaspartyl-dipeptidas 91.5 9.5 0.00021 37.4 15.9 137 205-343 169-342 (387)
148 COG0191 Fba Fructose/tagatose 91.4 8.3 0.00018 36.4 14.3 188 171-361 27-252 (286)
149 cd00452 KDPG_aldolase KDPG and 91.2 9.9 0.00021 33.5 14.3 78 208-296 87-166 (190)
150 PRK12581 oxaloacetate decarbox 91.2 11 0.00024 38.2 16.0 199 20-265 32-264 (468)
151 PRK12737 gatY tagatose-bisphos 91.1 6 0.00013 37.5 13.3 186 170-359 26-248 (284)
152 PRK08610 fructose-bisphosphate 91.0 13 0.00028 35.3 15.4 187 170-359 26-249 (286)
153 PRK06806 fructose-bisphosphate 91.0 7.9 0.00017 36.6 14.0 186 170-359 26-246 (281)
154 PLN02746 hydroxymethylglutaryl 90.7 13 0.00028 36.4 15.5 132 82-247 127-272 (347)
155 PF04909 Amidohydro_2: Amidohy 90.7 0.79 1.7E-05 42.0 7.0 159 172-333 83-263 (273)
156 PRK13404 dihydropyrimidinase; 90.6 21 0.00046 36.3 20.4 134 204-343 220-385 (477)
157 TIGR01108 oadA oxaloacetate de 90.6 12 0.00027 39.1 16.2 181 19-246 17-222 (582)
158 PRK03892 ribonuclease P protei 90.6 1.9 4E-05 38.7 8.7 132 189-331 59-203 (216)
159 cd07937 DRE_TIM_PC_TC_5S Pyruv 90.6 15 0.00033 34.5 17.0 126 77-246 92-222 (275)
160 PRK09282 pyruvate carboxylase 90.5 11 0.00025 39.4 15.9 127 76-246 96-227 (592)
161 PRK12330 oxaloacetate decarbox 90.3 18 0.0004 37.0 16.7 201 18-264 22-257 (499)
162 PRK06015 keto-hydroxyglutarate 90.3 11 0.00024 33.8 13.5 93 197-300 76-171 (201)
163 PRK07709 fructose-bisphosphate 90.2 17 0.00037 34.5 15.7 187 170-359 26-249 (285)
164 PRK08044 allantoinase; Provisi 90.1 1.7 3.6E-05 44.0 9.3 131 204-343 221-375 (449)
165 cd07944 DRE_TIM_HOA_like 4-hyd 89.9 17 0.00037 34.0 15.9 87 156-245 121-212 (266)
166 cd07943 DRE_TIM_HOA 4-hydroxy- 89.7 17 0.00037 33.8 15.9 88 156-246 124-215 (263)
167 PRK09389 (R)-citramalate synth 89.3 18 0.00039 37.0 16.0 131 82-245 79-215 (488)
168 cd01301 rDP_like renal dipepti 88.5 13 0.00028 35.7 13.5 125 205-333 154-302 (309)
169 PRK09248 putative hydrolase; V 88.3 2.2 4.7E-05 39.4 7.9 74 253-328 143-219 (246)
170 TIGR00221 nagA N-acetylglucosa 88.1 29 0.00063 34.3 16.3 155 175-343 179-349 (380)
171 PRK07945 hypothetical protein; 87.9 1.2 2.6E-05 43.2 6.2 73 253-331 248-321 (335)
172 PF03932 CutC: CutC family; I 87.4 21 0.00046 32.0 13.6 166 82-296 13-194 (201)
173 PRK07998 gatY putative fructos 87.2 27 0.00059 33.0 16.6 186 170-359 26-245 (283)
174 COG1735 Php Predicted metal-de 87.0 12 0.00026 35.6 11.9 112 189-304 135-259 (316)
175 PRK02382 dihydroorotase; Provi 86.0 5.7 0.00012 39.9 10.1 139 203-343 159-361 (443)
176 PLN02795 allantoinase 85.9 19 0.00041 37.0 13.9 26 202-227 209-234 (505)
177 PRK15108 biotin synthase; Prov 85.7 8.3 0.00018 37.6 10.7 95 170-266 76-187 (345)
178 PRK07084 fructose-bisphosphate 85.6 28 0.0006 33.6 13.9 75 170-244 32-111 (321)
179 PRK14040 oxaloacetate decarbox 85.3 53 0.0011 34.6 19.3 181 19-246 23-228 (593)
180 TIGR01858 tag_bisphos_ald clas 85.2 6.8 0.00015 37.1 9.5 185 171-359 25-246 (282)
181 PRK12344 putative alpha-isopro 85.1 36 0.00077 35.2 15.4 132 81-246 90-231 (524)
182 PRK07329 hypothetical protein; 85.0 1.5 3.3E-05 40.4 5.0 72 253-325 168-241 (246)
183 PRK07315 fructose-bisphosphate 85.0 36 0.00078 32.4 15.4 187 170-359 26-248 (293)
184 TIGR01859 fruc_bis_ald_ fructo 84.1 38 0.00083 32.0 15.1 187 170-359 24-246 (282)
185 COG5016 Pyruvate/oxaloacetate 84.0 45 0.00098 33.2 14.5 129 76-249 98-232 (472)
186 PF01116 F_bP_aldolase: Fructo 83.9 3.5 7.5E-05 39.2 6.9 187 171-361 26-253 (287)
187 PRK05718 keto-hydroxyglutarate 83.9 21 0.00046 32.2 11.7 77 208-295 98-177 (212)
188 PRK05588 histidinol-phosphatas 83.1 2.3 4.9E-05 39.5 5.3 72 253-325 169-242 (255)
189 COG1831 Predicted metal-depend 82.5 43 0.00094 31.4 18.6 153 170-338 97-277 (285)
190 PRK08123 histidinol-phosphatas 82.3 2 4.3E-05 40.3 4.6 48 253-303 200-251 (270)
191 TIGR01235 pyruv_carbox pyruvat 82.0 26 0.00056 39.8 13.8 127 76-247 625-763 (1143)
192 PRK12999 pyruvate carboxylase; 81.7 59 0.0013 37.1 16.5 127 77-246 628-764 (1146)
193 PRK07627 dihydroorotase; Provi 81.0 64 0.0014 32.3 21.6 152 188-342 145-364 (425)
194 TIGR01856 hisJ_fam histidinol 80.6 2 4.4E-05 39.8 4.0 47 253-303 188-238 (253)
195 COG2355 Zn-dependent dipeptida 80.1 23 0.00051 34.0 10.9 122 206-333 150-299 (313)
196 TIGR00856 pyrC_dimer dihydroor 79.5 26 0.00057 34.0 11.5 153 189-342 92-300 (341)
197 PRK00915 2-isopropylmalate syn 79.0 42 0.00091 34.6 13.3 186 18-245 21-225 (513)
198 PF01244 Peptidase_M19: Membra 78.9 8.1 0.00018 37.2 7.6 127 206-338 161-316 (320)
199 PRK05835 fructose-bisphosphate 78.5 14 0.0003 35.4 8.9 189 170-359 25-271 (307)
200 COG0826 Collagenase and relate 78.5 16 0.00035 35.7 9.6 96 176-274 16-124 (347)
201 PRK09059 dihydroorotase; Valid 77.1 84 0.0018 31.5 20.8 152 188-343 150-370 (429)
202 COG0119 LeuA Isopropylmalate/h 76.8 85 0.0018 31.4 18.5 139 73-245 73-220 (409)
203 COG1387 HIS2 Histidinol phosph 76.6 12 0.00026 34.4 7.8 63 253-320 150-213 (237)
204 PLN03228 methylthioalkylmalate 76.5 45 0.00097 34.3 12.5 107 105-245 200-315 (503)
205 TIGR00973 leuA_bact 2-isopropy 75.7 57 0.0012 33.5 13.1 107 105-245 108-222 (494)
206 PRK10027 cryptic adenine deami 74.8 1.1E+02 0.0023 32.3 15.0 143 188-343 178-330 (588)
207 PRK07998 gatY putative fructos 73.9 82 0.0018 29.8 15.6 92 204-303 114-232 (283)
208 PF05913 DUF871: Bacterial pro 73.1 30 0.00065 34.0 9.9 97 171-272 12-120 (357)
209 PRK07094 biotin synthase; Prov 72.5 36 0.00077 32.5 10.3 91 171-265 71-180 (323)
210 TIGR00433 bioB biotin syntheta 72.4 41 0.00089 31.5 10.6 61 205-266 98-174 (296)
211 PLN02321 2-isopropylmalate syn 71.3 77 0.0017 33.6 13.0 107 105-245 201-316 (632)
212 KOG2367 Alpha-isopropylmalate 71.2 1.1E+02 0.0023 31.3 13.0 194 16-248 72-283 (560)
213 TIGR01521 FruBisAldo_II_B fruc 70.8 34 0.00073 33.4 9.5 99 170-269 24-140 (347)
214 PRK09196 fructose-1,6-bisphosp 70.7 35 0.00076 33.3 9.6 100 170-270 26-143 (347)
215 PRK05451 dihydroorotase; Provi 70.7 26 0.00057 34.0 9.0 138 203-344 116-305 (345)
216 COG1242 Predicted Fe-S oxidore 70.6 98 0.0021 29.3 12.5 157 166-340 93-256 (312)
217 COG1001 AdeC Adenine deaminase 69.4 52 0.0011 34.3 10.8 129 205-343 189-323 (584)
218 cd00453 FTBP_aldolase_II Fruct 69.1 53 0.0011 31.9 10.3 186 171-359 22-288 (340)
219 PRK10307 putative glycosyl tra 68.8 1.1E+02 0.0023 30.0 13.0 93 204-305 244-341 (412)
220 cd03811 GT1_WabH_like This fam 68.4 42 0.0009 30.7 9.6 144 204-362 204-352 (353)
221 KOG1579 Homocysteine S-methylt 67.6 1.1E+02 0.0023 29.5 11.8 149 70-262 142-311 (317)
222 cd01311 PDC_hydrolase 2-pyrone 67.0 1.1E+02 0.0023 28.3 12.9 114 188-306 92-224 (263)
223 PRK13399 fructose-1,6-bisphosp 66.9 46 0.00099 32.5 9.5 189 170-359 26-293 (347)
224 PF02574 S-methyl_trans: Homoc 66.3 32 0.00069 32.7 8.4 42 70-122 129-172 (305)
225 cd01318 DHOase_IIb Dihydroorot 65.9 16 0.00035 35.7 6.5 90 253-343 182-307 (361)
226 cd07947 DRE_TIM_Re_CS Clostrid 65.7 1.2E+02 0.0026 28.6 15.2 134 83-246 81-233 (279)
227 TIGR03569 NeuB_NnaB N-acetylne 65.5 78 0.0017 30.7 10.9 23 202-224 73-95 (329)
228 TIGR00977 LeuA_rel 2-isopropyl 65.5 1.7E+02 0.0038 30.3 16.3 131 82-246 87-228 (526)
229 PRK11572 copper homeostasis pr 65.4 46 0.00099 30.9 8.8 114 172-296 69-193 (248)
230 PRK09197 fructose-bisphosphate 64.8 24 0.00053 34.4 7.2 190 170-359 29-295 (350)
231 TIGR00284 dihydropteroate synt 64.5 92 0.002 32.0 11.6 108 159-272 151-260 (499)
232 cd04946 GT1_AmsK_like This fam 64.1 1.2E+02 0.0026 29.9 12.4 94 205-306 246-345 (407)
233 PRK08508 biotin synthase; Prov 64.0 83 0.0018 29.5 10.6 79 170-251 40-122 (279)
234 PRK10076 pyruvate formate lyas 63.7 29 0.00064 31.3 7.2 66 170-235 19-84 (213)
235 TIGR03278 methan_mark_10 putat 63.3 82 0.0018 31.4 10.9 77 168-246 52-133 (404)
236 COG2159 Predicted metal-depend 63.1 1.4E+02 0.003 28.3 19.7 139 189-338 126-286 (293)
237 PRK11613 folP dihydropteroate 62.9 78 0.0017 30.0 10.1 137 177-319 39-202 (282)
238 PRK11170 nagA N-acetylglucosam 62.4 78 0.0017 31.3 10.5 152 177-344 179-347 (382)
239 cd00946 FBP_aldolase_IIA Class 62.0 53 0.0011 32.1 9.0 190 170-359 24-291 (345)
240 PRK13209 L-xylulose 5-phosphat 61.6 1.4E+02 0.0029 27.7 11.8 23 206-228 139-161 (283)
241 COG1180 PflA Pyruvate-formate 61.4 69 0.0015 29.8 9.5 80 189-269 83-178 (260)
242 PRK13753 dihydropteroate synth 61.4 89 0.0019 29.6 10.1 94 171-271 23-127 (279)
243 COG1603 RPP1 RNase P/RNase MRP 61.2 80 0.0017 28.9 9.4 128 203-333 62-201 (229)
244 PRK05301 pyrroloquinoline quin 60.1 1.7E+02 0.0038 28.5 13.4 52 169-224 45-96 (378)
245 PRK08417 dihydroorotase; Provi 60.0 1.2E+02 0.0026 29.8 11.5 150 189-343 117-335 (386)
246 smart00148 PLCXc Phospholipase 59.9 80 0.0017 26.2 8.7 20 81-100 33-52 (135)
247 PRK09140 2-dehydro-3-deoxy-6-p 59.6 1.3E+02 0.0029 26.9 15.4 84 208-302 94-181 (206)
248 PF01261 AP_endonuc_2: Xylose 59.4 1.2E+02 0.0025 26.2 12.9 89 173-262 71-185 (213)
249 PRK06256 biotin synthase; Vali 57.1 1E+02 0.0022 29.5 10.2 84 168-253 89-174 (336)
250 cd03820 GT1_amsD_like This fam 56.8 1.2E+02 0.0026 27.5 10.4 89 204-304 193-285 (348)
251 PLN02858 fructose-bisphosphate 56.3 55 0.0012 38.1 9.3 181 171-355 1123-1343(1378)
252 PLN02389 biotin synthase 56.3 1.4E+02 0.003 29.5 11.0 93 170-266 116-229 (379)
253 PRK08610 fructose-bisphosphate 56.0 74 0.0016 30.2 8.7 80 170-251 156-236 (286)
254 cd00423 Pterin_binding Pterin 55.7 1.1E+02 0.0025 28.2 9.9 66 205-273 62-130 (258)
255 TIGR03178 allantoinase allanto 55.4 52 0.0011 33.0 8.1 27 202-229 158-184 (443)
256 PRK09140 2-dehydro-3-deoxy-6-p 55.3 1.6E+02 0.0034 26.4 10.6 95 164-266 13-107 (206)
257 cd08207 RLP_NonPhot Ribulose b 55.1 1.1E+02 0.0024 30.6 10.1 110 69-227 156-269 (406)
258 TIGR01520 FruBisAldo_II_A fruc 55.0 1.8E+02 0.004 28.5 11.3 188 170-360 35-304 (357)
259 PLN02489 homocysteine S-methyl 54.5 2.1E+02 0.0046 27.7 16.3 141 70-261 161-329 (335)
260 PRK05265 pyridoxine 5'-phospha 54.4 53 0.0012 30.2 7.1 64 176-246 76-152 (239)
261 cd00739 DHPS DHPS subgroup of 52.7 1.3E+02 0.0029 27.9 9.8 93 177-272 25-129 (257)
262 TIGR02320 PEP_mutase phosphoen 52.0 2.1E+02 0.0047 27.0 14.1 125 163-299 82-238 (285)
263 PRK09196 fructose-1,6-bisphosp 51.9 2.4E+02 0.0052 27.6 15.7 99 205-303 123-280 (347)
264 KOG1706 Argininosuccinate synt 51.8 27 0.00059 33.4 4.9 68 206-273 99-179 (412)
265 PRK15427 colanic acid biosynth 50.9 2.6E+02 0.0055 27.6 13.8 147 204-354 237-403 (406)
266 TIGR00559 pdxJ pyridoxine 5'-p 50.9 64 0.0014 29.7 7.0 65 175-246 72-149 (237)
267 PF00977 His_biosynth: Histidi 50.2 95 0.0021 28.2 8.3 150 185-337 41-214 (229)
268 PRK04165 acetyl-CoA decarbonyl 49.9 2.9E+02 0.0064 28.0 13.0 91 203-308 139-237 (450)
269 COG1038 PycA Pyruvate carboxyl 49.5 2.1E+02 0.0046 31.3 11.3 65 178-245 696-766 (1149)
270 cd07942 DRE_TIM_LeuA Mycobacte 49.2 2.4E+02 0.0051 26.7 13.5 118 105-246 111-239 (284)
271 smart00481 POLIIIAc DNA polyme 48.9 16 0.00035 26.0 2.4 25 11-38 1-30 (67)
272 COG0800 Eda 2-keto-3-deoxy-6-p 48.3 2.1E+02 0.0046 25.9 11.9 92 165-265 17-108 (211)
273 cd00003 PNPsynthase Pyridoxine 48.3 75 0.0016 29.2 7.1 65 175-246 72-149 (234)
274 PRK09490 metH B12-dependent me 47.4 5.1E+02 0.011 30.0 15.9 145 70-261 158-326 (1229)
275 TIGR01434 glu_cys_ligase gluta 47.3 29 0.00062 35.7 4.7 31 81-111 310-341 (512)
276 COG0804 UreC Urea amidohydrola 47.2 1.3E+02 0.0027 30.2 8.8 155 155-318 187-379 (568)
277 PRK02107 glutamate--cysteine l 46.4 30 0.00066 35.6 4.7 31 81-111 314-345 (523)
278 PF03102 NeuB: NeuB family; I 45.6 66 0.0014 29.7 6.4 22 203-224 54-75 (241)
279 PRK03739 2-isopropylmalate syn 45.6 3.8E+02 0.0082 28.0 13.1 118 105-246 140-268 (552)
280 PRK09240 thiH thiamine biosynt 45.2 2.7E+02 0.0058 27.3 11.1 87 169-259 103-192 (371)
281 cd08206 RuBisCO_large_I_II_III 44.9 1.8E+02 0.0038 29.2 9.7 113 69-227 145-262 (414)
282 PF12758 DUF3813: Protein of u 44.6 1E+02 0.0022 22.2 5.8 49 308-356 2-58 (63)
283 cd08213 RuBisCO_large_III Ribu 44.6 1.6E+02 0.0035 29.5 9.4 113 69-227 144-260 (412)
284 PRK07709 fructose-bisphosphate 44.1 1.4E+02 0.003 28.3 8.5 79 171-251 157-236 (285)
285 PLN02599 dihydroorotase 44.0 1.4E+02 0.003 29.4 8.8 154 189-343 112-323 (364)
286 PRK13404 dihydropyrimidinase; 43.7 1.8E+02 0.0038 29.6 9.9 38 189-226 148-187 (477)
287 TIGR02495 NrdG2 anaerobic ribo 43.6 2.1E+02 0.0046 24.6 10.8 113 190-320 63-177 (191)
288 cd01335 Radical_SAM Radical SA 42.9 2E+02 0.0043 24.0 9.5 71 189-260 44-118 (204)
289 cd00740 MeTr MeTr subgroup of 42.2 2.7E+02 0.0059 25.8 10.1 90 180-272 30-128 (252)
290 COG3142 CutC Uncharacterized p 42.2 1.4E+02 0.003 27.4 7.7 71 203-275 102-181 (241)
291 PF04262 Glu_cys_ligase: Gluta 42.0 23 0.00049 35.0 2.9 32 80-111 310-342 (377)
292 PRK04208 rbcL ribulose bisopho 41.9 1.7E+02 0.0038 29.8 9.3 113 69-227 173-290 (468)
293 COG0646 MetH Methionine syntha 41.8 3.2E+02 0.007 26.1 13.2 30 70-99 137-168 (311)
294 COG3589 Uncharacterized conser 41.5 1.3E+02 0.0028 29.3 7.7 98 171-271 14-121 (360)
295 COG1856 Uncharacterized homolo 41.4 2.3E+02 0.005 26.1 8.9 54 176-229 42-99 (275)
296 TIGR01182 eda Entner-Doudoroff 41.3 2.7E+02 0.0058 25.0 10.4 94 164-266 11-104 (204)
297 PRK06015 keto-hydroxyglutarate 41.3 2.6E+02 0.0057 25.0 10.0 94 164-266 7-100 (201)
298 PF03740 PdxJ: Pyridoxal phosp 41.3 75 0.0016 29.3 6.0 64 176-246 74-150 (239)
299 PF02811 PHP: PHP domain; Int 41.2 19 0.00041 30.4 2.1 26 10-38 1-31 (175)
300 PRK13210 putative L-xylulose 5 41.1 2.9E+02 0.0062 25.4 10.8 21 79-99 19-39 (284)
301 PRK08645 bifunctional homocyst 40.8 4.4E+02 0.0094 27.9 12.5 29 70-98 119-149 (612)
302 TIGR01858 tag_bisphos_ald clas 40.7 1.8E+02 0.004 27.5 8.8 79 171-251 154-233 (282)
303 CHL00040 rbcL ribulose-1,5-bis 40.5 2.2E+02 0.0047 29.1 9.7 113 69-227 180-297 (475)
304 PRK09856 fructoselysine 3-epim 39.8 3E+02 0.0065 25.2 10.7 21 78-98 15-35 (275)
305 PF00388 PI-PLC-X: Phosphatidy 39.6 37 0.00081 28.3 3.6 18 81-98 31-48 (146)
306 COG5016 Pyruvate/oxaloacetate 39.6 4.1E+02 0.0088 26.7 14.6 144 167-323 92-255 (472)
307 TIGR02852 spore_dpaB dipicolin 39.3 43 0.00093 29.7 4.0 74 243-320 94-171 (187)
308 cd08209 RLP_DK-MTP-1-P-enolase 39.3 2.6E+02 0.0055 27.9 9.8 111 69-228 137-253 (391)
309 PRK14847 hypothetical protein; 38.3 3.8E+02 0.0083 26.0 13.4 116 105-246 142-270 (333)
310 TIGR02082 metH 5-methyltetrahy 38.3 5.2E+02 0.011 29.8 13.1 146 70-261 142-310 (1178)
311 TIGR03326 rubisco_III ribulose 38.0 2.6E+02 0.0055 28.1 9.7 113 69-227 157-273 (412)
312 COG0107 HisF Imidazoleglycerol 38.0 2.6E+02 0.0056 25.9 8.7 86 175-262 29-119 (256)
313 PRK06267 hypothetical protein; 37.8 1.3E+02 0.0028 29.3 7.5 125 202-332 150-300 (350)
314 TIGR02493 PFLA pyruvate format 37.0 79 0.0017 28.4 5.6 57 170-226 46-102 (235)
315 TIGR01859 fruc_bis_ald_ fructo 36.9 3.7E+02 0.0079 25.4 14.9 47 205-251 187-233 (282)
316 COG1456 CdhE CO dehydrogenase/ 36.2 4.2E+02 0.009 26.1 10.2 123 162-296 99-232 (467)
317 TIGR01435 glu_cys_lig_rel glut 35.5 53 0.0012 35.4 4.7 38 80-117 258-298 (737)
318 cd01317 DHOase_IIa Dihydroorot 35.5 1.6E+02 0.0034 28.7 7.8 37 188-225 104-140 (374)
319 TIGR02109 PQQ_syn_pqqE coenzym 35.3 4.1E+02 0.009 25.5 10.8 53 169-225 36-88 (358)
320 cd03799 GT1_amsK_like This is 35.3 3.6E+02 0.0079 24.9 13.0 98 204-305 194-295 (355)
321 COG3454 Metal-dependent hydrol 34.9 4.4E+02 0.0095 25.7 11.5 126 205-344 210-342 (377)
322 PRK07135 dnaE DNA polymerase I 34.6 30 0.00065 38.5 2.7 25 7-31 1-30 (973)
323 COG3964 Predicted amidohydrola 34.2 4.4E+02 0.0095 25.5 10.7 78 189-266 210-302 (386)
324 TIGR00542 hxl6Piso_put hexulos 34.1 3.8E+02 0.0082 24.7 11.4 23 205-227 133-155 (279)
325 cd00854 NagA N-acetylglucosami 33.9 62 0.0014 31.7 4.7 41 208-250 175-216 (374)
326 cd08208 RLP_Photo Ribulose bis 33.5 4.2E+02 0.009 26.7 10.3 109 69-226 173-285 (424)
327 cd03812 GT1_CapH_like This fam 33.3 1.8E+02 0.0038 27.2 7.7 91 204-306 207-301 (358)
328 PRK04527 argininosuccinate syn 33.2 4.8E+02 0.01 26.0 10.7 140 204-346 95-296 (400)
329 PF07287 DUF1446: Protein of u 33.1 3.3E+02 0.0072 26.8 9.4 43 283-332 149-193 (362)
330 TIGR02320 PEP_mutase phosphoen 32.8 4.3E+02 0.0094 25.0 16.0 174 53-264 62-263 (285)
331 COG0854 PdxJ Pyridoxal phospha 32.7 1.7E+02 0.0037 26.7 6.7 64 176-246 74-150 (243)
332 PRK13585 1-(5-phosphoribosyl)- 32.6 3.1E+02 0.0067 24.7 8.8 83 178-262 37-121 (241)
333 PRK07455 keto-hydroxyglutarate 32.5 3.4E+02 0.0074 23.7 14.9 82 209-302 96-182 (187)
334 TIGR00167 cbbA ketose-bisphosp 32.3 1.3E+02 0.0028 28.5 6.4 46 206-251 194-239 (288)
335 COG0191 Fba Fructose/tagatose 32.2 1.7E+02 0.0037 27.8 6.9 55 191-245 175-231 (286)
336 PF08187 Tetradecapep: Myoacti 32.0 11 0.00025 18.2 -0.4 8 242-249 7-14 (14)
337 cd06283 PBP1_RegR_EndR_KdgR_li 31.9 3.1E+02 0.0067 24.3 8.8 119 205-323 16-147 (267)
338 PRK13361 molybdenum cofactor b 31.8 4.6E+02 0.01 25.0 11.4 87 170-260 45-134 (329)
339 PRK00208 thiG thiazole synthas 31.8 4.3E+02 0.0092 24.6 10.2 129 161-301 64-205 (250)
340 COG2100 Predicted Fe-S oxidore 31.6 5E+02 0.011 25.4 12.4 115 154-271 113-263 (414)
341 PRK09195 gatY tagatose-bisphos 31.5 3.1E+02 0.0067 26.0 8.7 79 171-251 156-235 (284)
342 TIGR02351 thiH thiazole biosyn 31.4 5E+02 0.011 25.4 10.5 85 170-258 103-190 (366)
343 cd08212 RuBisCO_large_I Ribulo 31.2 3.6E+02 0.0078 27.4 9.5 114 69-228 158-275 (450)
344 KOG3020 TatD-related DNase [Re 31.1 4.1E+02 0.0089 25.4 9.4 66 206-273 136-206 (296)
345 PRK07535 methyltetrahydrofolat 31.1 4.2E+02 0.0091 24.6 9.5 90 179-271 28-124 (261)
346 COG0036 Rpe Pentose-5-phosphat 31.0 3.3E+02 0.0072 24.8 8.3 119 210-338 52-192 (220)
347 PRK05660 HemN family oxidoredu 30.9 5.2E+02 0.011 25.3 10.6 68 189-256 58-133 (378)
348 PRK07535 methyltetrahydrofolat 30.8 4.4E+02 0.0096 24.5 15.0 25 207-231 105-130 (261)
349 PRK15452 putative protease; Pr 30.6 5.8E+02 0.013 25.8 12.9 67 211-277 101-185 (443)
350 TIGR03699 mena_SCO4550 menaqui 30.5 2.3E+02 0.005 27.2 8.0 53 170-225 72-125 (340)
351 cd00137 PI-PLCc Catalytic doma 30.4 1.7E+02 0.0037 27.4 6.8 20 80-99 38-57 (274)
352 cd04734 OYE_like_3_FMN Old yel 30.4 5.1E+02 0.011 25.1 18.4 174 70-272 132-342 (343)
353 PRK07369 dihydroorotase; Provi 30.3 5.6E+02 0.012 25.5 19.7 151 189-343 148-367 (418)
354 PF03659 Glyco_hydro_71: Glyco 30.3 2.1E+02 0.0045 28.4 7.6 65 160-227 4-69 (386)
355 COG0076 GadB Glutamate decarbo 30.2 1.5E+02 0.0032 30.2 6.8 70 154-227 175-246 (460)
356 PRK14024 phosphoribosyl isomer 30.1 4.3E+02 0.0092 24.1 15.4 142 188-333 47-209 (241)
357 cd01422 MGS Methylglyoxal synt 30.0 1.5E+02 0.0032 23.9 5.5 72 246-324 27-102 (115)
358 TIGR03471 HpnJ hopanoid biosyn 29.8 4.9E+02 0.011 26.3 10.5 99 168-267 225-340 (472)
359 PF00356 LacI: Bacterial regul 29.7 1.1E+02 0.0023 20.4 3.8 38 316-356 3-40 (46)
360 TIGR03234 OH-pyruv-isom hydrox 29.7 4.2E+02 0.0091 23.9 17.9 20 206-225 124-143 (254)
361 TIGR02666 moaA molybdenum cofa 29.6 3.7E+02 0.008 25.7 9.2 76 170-249 43-120 (334)
362 PRK02797 4-alpha-L-fucosyltran 29.5 4.7E+02 0.01 25.3 9.5 94 253-360 218-320 (322)
363 COG0502 BioB Biotin synthase a 29.1 3.9E+02 0.0084 26.0 9.0 64 202-266 115-195 (335)
364 TIGR02668 moaA_archaeal probab 29.0 3.8E+02 0.0082 25.1 9.0 76 169-248 39-115 (302)
365 PRK05718 keto-hydroxyglutarate 29.0 4.3E+02 0.0093 23.8 10.0 151 164-336 18-176 (212)
366 TIGR03586 PseI pseudaminic aci 28.9 2E+02 0.0044 27.8 7.1 21 203-223 75-95 (327)
367 cd00739 DHPS DHPS subgroup of 28.8 4.7E+02 0.01 24.2 9.8 45 79-123 27-71 (257)
368 PRK12857 fructose-1,6-bisphosp 28.3 4E+02 0.0087 25.2 8.9 79 171-251 156-235 (284)
369 TIGR00970 leuA_yeast 2-isoprop 28.2 7.1E+02 0.015 26.0 14.4 119 105-246 136-267 (564)
370 COG2918 GshA Gamma-glutamylcys 27.8 78 0.0017 31.9 4.0 33 80-112 314-347 (518)
371 PRK08445 hypothetical protein; 27.7 5.1E+02 0.011 25.2 9.8 74 171-247 74-160 (348)
372 PRK07084 fructose-bisphosphate 27.6 5.7E+02 0.012 24.7 14.2 99 205-303 126-271 (321)
373 TIGR02494 PFLE_PFLC glycyl-rad 27.5 1.3E+02 0.0029 28.1 5.6 56 170-225 106-161 (295)
374 PF00764 Arginosuc_synth: Argi 27.4 1.9E+02 0.0041 28.7 6.7 140 205-346 92-291 (388)
375 COG1519 KdtA 3-deoxy-D-manno-o 27.4 6.5E+02 0.014 25.3 14.7 134 202-360 268-403 (419)
376 COG0613 Predicted metal-depend 27.3 44 0.00096 31.1 2.2 27 9-38 3-32 (258)
377 cd01541 PBP1_AraR Ligand-bindi 27.2 3.7E+02 0.008 24.1 8.4 65 205-269 16-89 (273)
378 TIGR01290 nifB nitrogenase cof 26.9 3.4E+02 0.0074 27.4 8.7 75 168-244 58-136 (442)
379 PF10566 Glyco_hydro_97: Glyco 26.9 3.2E+02 0.0069 25.8 7.8 38 188-225 118-157 (273)
380 cd08319 Death_RAIDD Death doma 26.5 2.1E+02 0.0046 21.7 5.5 47 310-362 11-57 (83)
381 PRK06552 keto-hydroxyglutarate 26.5 4.8E+02 0.01 23.5 10.7 95 164-266 16-112 (213)
382 PF13407 Peripla_BP_4: Peripla 26.3 3.5E+02 0.0077 24.0 8.1 59 156-223 27-85 (257)
383 COG0800 Eda 2-keto-3-deoxy-6-p 26.3 4.8E+02 0.011 23.6 8.5 88 203-303 23-115 (211)
384 PF01876 RNase_P_p30: RNase P 26.3 27 0.00059 29.4 0.6 82 251-332 62-146 (150)
385 PRK11145 pflA pyruvate formate 26.2 1.2E+02 0.0026 27.5 4.9 34 192-225 73-106 (246)
386 cd07937 DRE_TIM_PC_TC_5S Pyruv 26.1 5.4E+02 0.012 24.0 19.2 118 175-303 93-226 (275)
387 COG1038 PycA Pyruvate carboxyl 26.1 7E+02 0.015 27.6 10.7 139 163-324 10-159 (1149)
388 cd06270 PBP1_GalS_like Ligand 26.0 4.7E+02 0.01 23.3 8.9 64 205-269 16-84 (268)
389 TIGR01496 DHPS dihydropteroate 25.7 4.6E+02 0.01 24.2 8.7 46 78-123 25-70 (257)
390 PF10113 Fibrillarin_2: Fibril 25.6 7.1E+02 0.015 25.1 10.9 107 191-300 188-306 (505)
391 cd08148 RuBisCO_large Ribulose 25.1 6.2E+02 0.013 25.0 9.8 112 69-227 140-255 (366)
392 PRK00507 deoxyribose-phosphate 25.0 5.2E+02 0.011 23.4 14.1 125 81-247 79-207 (221)
393 PF00809 Pterin_bind: Pterin b 24.5 2.9E+02 0.0063 24.6 7.0 64 206-272 58-125 (210)
394 PRK09549 mtnW 2,3-diketo-5-met 24.3 6E+02 0.013 25.5 9.6 110 69-227 147-262 (407)
395 cd01542 PBP1_TreR_like Ligand- 24.3 4.9E+02 0.011 22.9 8.6 64 205-269 16-84 (259)
396 cd05560 Xcc1710_like Xcc1710_l 24.0 1.3E+02 0.0027 24.1 4.0 45 230-274 41-90 (109)
397 TIGR03332 salvage_mtnW 2,3-dik 23.8 5.7E+02 0.012 25.6 9.3 112 69-227 152-267 (407)
398 PRK13397 3-deoxy-7-phosphohept 23.7 6E+02 0.013 23.6 11.2 22 205-226 66-87 (250)
399 PRK12928 lipoyl synthase; Prov 23.7 6.3E+02 0.014 23.9 11.2 63 156-221 204-274 (290)
400 cd03819 GT1_WavL_like This fam 23.6 5.8E+02 0.012 23.6 9.3 92 204-306 200-299 (355)
401 COG2873 MET17 O-acetylhomoseri 23.5 2.6E+02 0.0056 27.8 6.6 83 153-247 122-204 (426)
402 COG1850 RbcL Ribulose 1,5-bisp 23.4 6.8E+02 0.015 25.0 9.5 112 69-226 168-282 (429)
403 COG0329 DapA Dihydrodipicolina 23.4 5.1E+02 0.011 24.6 8.7 90 156-245 6-103 (299)
404 TIGR02026 BchE magnesium-proto 23.3 8E+02 0.017 25.0 16.3 99 167-267 219-340 (497)
405 cd04951 GT1_WbdM_like This fam 23.3 5.9E+02 0.013 23.5 11.3 89 205-306 204-297 (360)
406 PRK15062 hydrogenase isoenzyme 23.3 5.6E+02 0.012 25.2 8.9 102 155-268 107-217 (364)
407 PLN02858 fructose-bisphosphate 22.9 1.3E+03 0.028 27.2 14.2 90 205-302 1210-1333(1378)
408 PF09278 MerR-DNA-bind: MerR, 22.8 1E+02 0.0022 21.6 3.0 18 316-333 7-24 (65)
409 cd00248 Mth938-like Mth938-lik 22.5 1.3E+02 0.0028 23.9 3.8 45 231-275 41-91 (109)
410 PLN00200 argininosuccinate syn 22.4 7.9E+02 0.017 24.6 12.9 142 203-346 98-300 (404)
411 PF13378 MR_MLE_C: Enolase C-t 22.3 1.7E+02 0.0036 22.8 4.5 36 189-227 20-55 (111)
412 TIGR00075 hypD hydrogenase exp 22.1 6.2E+02 0.013 25.0 8.9 102 155-268 113-223 (369)
413 COG1964 Predicted Fe-S oxidore 22.0 2.3E+02 0.005 28.7 6.1 52 171-223 92-144 (475)
414 cd00952 CHBPH_aldolase Trans-o 22.0 6.1E+02 0.013 24.0 9.0 71 172-245 28-107 (309)
415 PLN02446 (5-phosphoribosyl)-5- 22.0 6.6E+02 0.014 23.5 14.5 141 188-335 58-228 (262)
416 PF13918 PLDc_3: PLD-like doma 21.8 1.1E+02 0.0023 27.0 3.3 61 113-173 84-149 (177)
417 PRK13399 fructose-1,6-bisphosp 21.6 7.7E+02 0.017 24.1 15.4 100 205-304 123-281 (347)
418 PF01116 F_bP_aldolase: Fructo 21.2 3.3E+02 0.0071 25.8 6.8 79 171-251 156-238 (287)
419 PRK09485 mmuM homocysteine met 21.1 7.1E+02 0.015 23.6 16.0 141 70-261 134-300 (304)
420 COG1798 DPH5 Diphthamide biosy 20.6 3E+02 0.0064 25.7 6.1 42 176-223 67-108 (260)
421 PRK09060 dihydroorotase; Valid 20.4 8.6E+02 0.019 24.3 20.5 57 287-343 290-364 (444)
422 PRK09532 DNA polymerase III su 20.1 76 0.0016 35.1 2.6 25 7-31 1-30 (874)
423 cd06273 PBP1_GntR_like_1 This 20.0 6.1E+02 0.013 22.4 8.8 65 205-269 16-84 (268)
No 1
>PTZ00124 adenosine deaminase; Provisional
Probab=100.00 E-value=3.4e-72 Score=542.29 Aligned_cols=320 Identities=23% Similarity=0.346 Sum_probs=288.9
Q ss_pred hhhhhCCcchhccccCCCCCHHHHHHHHHHhccCCCCCccchHHHHh-----hcCCCHHHHHHhhhHHHhhcCCHHHHHH
Q 017943 2 EWFASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIM-----KSDRSLHEVFKLFDLIHVLTTDHATVTR 76 (363)
Q Consensus 2 ~f~~~lPK~eLH~HL~Gsi~~~~l~~la~~~~~~~~~~~~~~~~~~~-----~~~~~l~~f~~~f~~~~~~~~~~e~~~~ 76 (363)
+|+++|||+|||+||+||++++|+++||+ ++|+.+..+.+++.. ..+++|.+||+.|..+..++++++++++
T Consensus 30 ~~~~~lPKvELH~HLdGsi~~~tl~~La~---~~~~~~~~~~~~l~~~~~~~~~~~~L~~fl~~f~~~~~vl~t~~dl~r 106 (362)
T PTZ00124 30 KIWKRIPKCELHCHLDLCFSVDFFLSCIR---KYNLQPNLSDEEILDYYLFAKGGKSLGEFVEKAIRVADIFNDYEVIED 106 (362)
T ss_pred HHHhcCCceeEeecccCCCCHHHHHHHHH---HcCCCCCCCHHHHHHHHhcccCCCCHHHHHHHHHHHHHHhCCHHHHHH
Confidence 68999999999999999999999999998 577755434443321 2367999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEeeCCCcc-ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 017943 77 ITQEVVEDFASENIVYLELRTTPKRN-ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (363)
Q Consensus 77 ~~~~~~~~~~~~gV~y~E~r~~p~~~-~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (363)
+++++++++++|||+|+|+||+|+.+ ...|++.+++++++++|++++++ ..+
T Consensus 107 ~a~e~~~d~~~dgV~Y~Eir~~P~~~~~~~gl~~~~vv~av~~g~~~a~~---------------------------~~~ 159 (362)
T PTZ00124 107 LAKHAVFNKYKEGVVLMEFRYSPTFVAFKHNLDIDLIHQAIVKGIKEAVE---------------------------LLD 159 (362)
T ss_pred HHHHHHHHHHHcCCEEEEEEcCchhhhcCCCCCHHHHHHHHHHHHHHHHh---------------------------ccC
Confidence 99999999999999999999999764 46899999999999999998642 125
Q ss_pred CCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCCh---h
Q 017943 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNK---E 232 (363)
Q Consensus 156 ~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~---~ 232 (363)
.||.+++|+|++|+.+++.+.++++.+.++++. ||||||+|+|.. ...|.++|+.||+.|+++|+||||..++ .
T Consensus 160 ~gI~~~lI~~~~R~~~~e~a~e~~~~a~~~~~~-vvGiDLaG~E~~--~~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~ 236 (362)
T PTZ00124 160 HKIEVGLLCIGDTGHDAAPIKESADFCLKHKAD-FVGFDHAGHEVD--LKPFKDIFDYVREAGVNLTVHAGEDVTLPNLN 236 (362)
T ss_pred CCceEeEEEEecCCCCHHHHHHHHHHHHhccCC-eEEEeccCCCCC--cHHHHHHHHHHHHCCCCEEEEeCCCCCCCcch
Confidence 799999999999999999999999999998774 999999999984 3569999999999999999999997433 3
Q ss_pred hHHHHHh-cCCCeeeEeccc--CHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCC
Q 017943 233 EIQSMLD-FLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFST 309 (363)
Q Consensus 233 ~i~~~l~-~g~~rigHg~~~--~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~ 309 (363)
++++++. +|++|||||+.+ ++++++++++++|++|+|||||+.++.++++..||++.|+++|+||+||||||++|++
T Consensus 237 ~v~~ai~~l~~~RIGHG~~~~~d~~l~~~l~~~~I~lEvCPtSN~~~~~v~~~~~HPi~~l~~~Gv~v~InTDDp~~~~t 316 (362)
T PTZ00124 237 TLYSAIQVLKVKRIGHGIRVAESQELIDMVKEKDILLEVCPISNVLLNNAKSMDTHPIRKLYDAGVKVSVNSDDPGMFLT 316 (362)
T ss_pred hHHHHHHHhCCCccccccccCCCHHHHHHHHHcCCeEEECCcchhhhhcCCchhhHHHHHHHHCCCcEEEeCCCccccCC
Confidence 4566664 899999999987 6899999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 017943 310 SVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEIF 354 (363)
Q Consensus 310 ~l~~E~~~~~~~~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~ 354 (363)
+|++||..++..+|+|.+++.++++||+++||+++++|++|++++
T Consensus 317 ~l~~Ey~~~~~~~gls~~~l~~l~~nai~asF~~~~~K~~l~~~~ 361 (362)
T PTZ00124 317 NINDDYEELYTHLNFTLADFMKMNEWALEKSFLDKDIKLKIKKLY 361 (362)
T ss_pred ChhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999875
No 2
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=100.00 E-value=2.1e-69 Score=521.82 Aligned_cols=305 Identities=21% Similarity=0.323 Sum_probs=281.6
Q ss_pred ChhhhhCCc-chhccccCCCCCHHHHHHHHHHhccCCCCCccchHHHHhhcCCCHHHHHHhhhHHHhhcCCHHHHHHHHH
Q 017943 1 MEWFASMPK-VELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQ 79 (363)
Q Consensus 1 ~~f~~~lPK-~eLH~HL~Gsi~~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~f~~~~~~~~~~e~~~~~~~ 79 (363)
++|+++||| +|||+||+||++++|++++|++ +|++.|..+..+++++++++++++
T Consensus 18 ~~~~~~lPK~~eLH~Hl~Gsi~~~tl~~la~~------------------------~fl~~f~~~~~~l~~~~~~~~~~~ 73 (345)
T cd01321 18 FKIIQKMPKGALLHVHDTAMVSSDWLIKNATY------------------------RFEQIFDIIDGLLTYLPIFRDYYR 73 (345)
T ss_pred HHHHHhCCChHhhccCccccCCHHHHHHHHHH------------------------HHHHHHHHHHHHhcCHHHHHHHHH
Confidence 368999999 8999999999999999999971 799999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEeeCCCc---cccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCC
Q 017943 80 EVVEDFASENIVYLELRTTPKR---NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGK 156 (363)
Q Consensus 80 ~~~~~~~~~gV~y~E~r~~p~~---~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (363)
++++++++|||+|+|+||+|.. +...|++.+++++++.++++.+.+. .+.
T Consensus 74 ~~~~d~~~dgV~Y~Eir~~P~~~~~~~~~g~~~~~v~~av~~~~~~~~~~--------------------------~~~- 126 (345)
T cd01321 74 RLLEELYEDNVQYVELRSSFSPLYDLDGREYDYEETVQLLEEVVEKFKKT--------------------------HPD- 126 (345)
T ss_pred HHHHHHHHcCCEEEEEeecchHHHHccCCCCCHHHHHHHHHHHHHHHHHh--------------------------CCC-
Confidence 9999999999999999999974 3357899999999999999886531 223
Q ss_pred CcEEEEEEEeeCCCCHHHHHHHHHHHHhhC---CCceEEEecCCCCC-CCChhhHHHHHHHHHHcC--CceeeecCCCCC
Q 017943 157 KIYVRLLLSIDRRETTEAAMETVKLALEMR---DLGVVGIDLSGNPT-KGEWTTFLPALKFAREQG--LQITLHCGEIPN 230 (363)
Q Consensus 157 gi~~~li~~~~r~~~~e~~~~~~~~a~~~~---~~~vvGidl~g~e~-~~~~~~~~~~~~~A~~~g--l~~~~HagE~~~ 230 (363)
||.+++|+|++|+.+++.+.++++.+.+++ .+.|+||||+|+|. ..++..|.++|+.|++.| +++|+||||..+
T Consensus 127 ~i~v~lI~~~~R~~~~e~~~e~~~~a~~~~~~~~~~VvGidL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~ 206 (345)
T cd01321 127 FIGLKIIYATLRNFNDSEIKESMEQCLNLKKKFPDFIAGFDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNG 206 (345)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHHHHHHhCCCeEEEEecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcC
Confidence 799999999999999999999999999874 33599999999994 668899999999999999 999999999874
Q ss_pred -----hhhHHHHHhcCCCeeeEeccc--CHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCC
Q 017943 231 -----KEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDD 303 (363)
Q Consensus 231 -----~~~i~~~l~~g~~rigHg~~~--~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd 303 (363)
++++++++.+|++|||||+.+ +|++++++++++|++|+|||||+.++.++++..||++.|+++||||+|||||
T Consensus 207 ~~~~~~~~v~~al~lg~~RIGHG~~~~~dp~ll~~l~~~~I~lEvCPtSN~~~~~v~~~~~HPl~~ll~~Gv~vtinTDD 286 (345)
T cd01321 207 DGTETDENLVDALLLNTKRIGHGFALPKHPLLMDLVKKKNIAIEVCPISNQVLGLVSDLRNHPAAALLARGVPVVISSDD 286 (345)
T ss_pred CCCCChhHHHHHHHhCCCcCccccccCcCHHHHHHHHHcCCeEEECcchhhhhccccchhhChHHHHHHCCCeEEEeCCC
Confidence 467888888999999999987 5899999999999999999999999999999999999999999999999999
Q ss_pred CCccCC-ChHHHHHHHHHHCC---CCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 017943 304 SGVFST-SVSREYDLAASAFS---LGRREMFQLAKSAVKFIFANGRVKEDLKEIFDL 356 (363)
Q Consensus 304 ~~~~~~-~l~~E~~~~~~~~~---l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~ 356 (363)
|++|++ +|++||+.+...+| ++.+++.+|++||+++||+++++|++|++++++
T Consensus 287 p~~f~t~~l~~Ey~~~~~~~g~~~l~~~~l~~l~~nsi~~sF~~~~~K~~l~~~~~~ 343 (345)
T cd01321 287 PGFWGAKGLSHDFYQAFMGLAPADAGLRGLKQLAENSIRYSALSDQEKDEAVAKWEK 343 (345)
T ss_pred cchhCCCCchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999 99999999999999 999999999999999999999999999999854
No 3
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=100.00 E-value=7.3e-67 Score=504.25 Aligned_cols=315 Identities=38% Similarity=0.586 Sum_probs=273.0
Q ss_pred hCCcchhccccCCCCCHHHHHHHHHHhccCCCC-C-ccchH----HHH-hhcCCCHHHHHHhhhHHHhhcC---CHHHHH
Q 017943 6 SMPKVELHAHLNGSIRDSTLLELARVLGEKGVI-V-FSDVE----HVI-MKSDRSLHEVFKLFDLIHVLTT---DHATVT 75 (363)
Q Consensus 6 ~lPK~eLH~HL~Gsi~~~~l~~la~~~~~~~~~-~-~~~~~----~~~-~~~~~~l~~f~~~f~~~~~~~~---~~e~~~ 75 (363)
.+||+|||+||+||++++++++++++ ++.. . ..... .+. ...++++.+|+..|..+..+++ ++++++
T Consensus 1 m~pK~eLH~HL~Gsi~~~~l~ela~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~ 77 (331)
T PF00962_consen 1 MLPKAELHIHLDGSISPETLLELAKK---NNICELPADTDEELEKHLTRPENFRSLNEFLELFDIISSVLQADRTPEDLR 77 (331)
T ss_dssp TS-EEEEEEEGGGSS-HHHHHHHHHH---CTCC-TTSCSSHHHHHHHHCTSSCSSHHHHHHHHHHHHHHHTCSTSHHHHH
T ss_pred CCCEEEeeeCCccCCCHHHHHHHHHh---CCCCccccccchhhhhHHhhhhhcccHHHHHHHHHHhhhhhhhcccHHHHH
Confidence 37999999999999999999999994 5543 1 11111 111 2346799999999999999999 999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEeeCCCccccCC--CCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCC
Q 017943 76 RITQEVVEDFASENIVYLELRTTPKRNESIG--MSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGT 153 (363)
Q Consensus 76 ~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (363)
++++++++++++|||+|+|+|++|..+...+ ++.+++++++.++++++.+
T Consensus 78 ~~~~~~l~~~~~dnV~YlElr~~P~~~~~~~~~~~~~~~~~~i~~~~~~a~~---------------------------- 129 (331)
T PF00962_consen 78 RYAYEVLEDFAEDNVVYLELRFSPQFHAQLGGNLSFDEVVEAIIEGIDRAEK---------------------------- 129 (331)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEESHHHHHTTTCSSTHHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHcCCeEEEEEeccccccccCCCCCHHHHHHHHHhhhhhccc----------------------------
Confidence 9999999999999999999999999865555 8999999999999998753
Q ss_pred CCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhh
Q 017943 154 RGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEE 233 (363)
Q Consensus 154 ~~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~ 233 (363)
++++.+++|++..|+.+.+.+.+.++.+.+++++.|||||++|+|..+++..|.++|+.|+++|+++|+||||..++++
T Consensus 130 -~~~i~~~li~~~~R~~~~~~~~~~~~~~~~~~~~~vvG~dl~g~E~~~~~~~~~~~~~~a~~~gl~~t~HaGE~~~~~~ 208 (331)
T PF00962_consen 130 -EFGIKVRLIISVLRHFPDEWAEEIVELASKYPDKGVVGFDLAGDEDGGPPLKFAPAFRKAREAGLKLTVHAGETGGPEH 208 (331)
T ss_dssp -HHTTEEEEEEEEETTSTHHHHHHHHHHHHHTTTTTEEEEEEESSTTSTTGGGHHHHHHHHHHTT-EEEEEESSSSTHHH
T ss_pred -cccccccccccccccchHHHHHHHHHHHhhcccceEEEEEecCCcccCchHHHHHHHhhhcccceeecceecccCCccc
Confidence 4568999999999999999999999999999988999999999999999999999999999999999999999999998
Q ss_pred HHHHHh-cCCCeeeEeccc--CHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCC
Q 017943 234 IQSMLD-FLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTS 310 (363)
Q Consensus 234 i~~~l~-~g~~rigHg~~~--~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~ 310 (363)
+++++. +|++|||||+.+ +|++++++++++|++|+|||||+.++.+.++..||+++|+++||||+||||||++|+++
T Consensus 209 ~~~ai~~l~~~RIgHG~~~~~~p~l~~~~~~~~I~iEvcptSN~~~~~~~~~~~hP~~~~~~~gv~v~i~TDd~~~~~~~ 288 (331)
T PF00962_consen 209 IRDAILLLGADRIGHGVRLIKDPELLELLAERQIPIEVCPTSNVQLGAVPSYEEHPLRKLLDAGVPVSINTDDPGVFGTT 288 (331)
T ss_dssp HHHHHHTST-SEEEE-GGGGGSHHHHHHHHHTT-EEEE-HHHHHHTTSSSTGGG-CHHHHHHTT-EEEE--BSHHHHT-S
T ss_pred ccchhhhccceeecchhhhhhhhHHHHHHHHhCCCeeeCCCcCcccceeeecchhHHHHHHHcCCceeccCCCccccCCC
Confidence 998887 599999999987 68899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 017943 311 VSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKE 352 (363)
Q Consensus 311 l~~E~~~~~~~~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~ 352 (363)
|++||..+++.+|+|.+|+.++++||+++||+++++|++|++
T Consensus 289 l~~ey~~~~~~~~l~~~~l~~l~~nsi~~sf~~~~~K~~ll~ 330 (331)
T PF00962_consen 289 LSDEYYLAAEAFGLSLADLKQLARNSIEASFLSEEEKAELLA 330 (331)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHHCSSS-HHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHhc
Confidence 999999999999999999999999999999999999999986
No 4
>KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.9e-66 Score=489.04 Aligned_cols=328 Identities=31% Similarity=0.461 Sum_probs=297.4
Q ss_pred hhhhhC-CcchhccccCCCCCHHHHHHHHHHhccCCCCC-----ccchHHHHhhc-C-CCHHHHHH-hhhHHHhhcCCHH
Q 017943 2 EWFASM-PKVELHAHLNGSIRDSTLLELARVLGEKGVIV-----FSDVEHVIMKS-D-RSLHEVFK-LFDLIHVLTTDHA 72 (363)
Q Consensus 2 ~f~~~l-PK~eLH~HL~Gsi~~~~l~~la~~~~~~~~~~-----~~~~~~~~~~~-~-~~l~~f~~-~f~~~~~~~~~~e 72 (363)
+||++| ||+|||+||+||+++++++++++ ++|.+. +.+++.++.+. + ..+.+|++ .|..+..++.+++
T Consensus 41 ~~l~~l~pk~eLHaHl~Gsls~~~l~~L~~---r~~~~~p~~~~~~~~~~~l~~~~~~~~l~~f~~~~f~~l~~ll~~~~ 117 (399)
T KOG1097|consen 41 NFLQKLPPKVELHAHLTGSLSPDLLLDLTY---RFGIPLPKARTAEELEKVLERYKPLYPLADFLDNIFYLLHGLLIYAP 117 (399)
T ss_pred HHHHhCCCCeEEEeeccccccHHHHHHHHH---hcCCCCcccccHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHH
Confidence 689999 88999999999999999999999 466543 33455555432 2 25899999 8889999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEe-eCCCccccCC-CCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccc
Q 017943 73 TVTRITQEVVEDFASENIVYLELR-TTPKRNESIG-MSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDAC 150 (363)
Q Consensus 73 ~~~~~~~~~~~~~~~~gV~y~E~r-~~p~~~~~~g-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (363)
+++++++++++++++|||+|+|+| +.|+.+...| ++.+++++.+.++++++++
T Consensus 118 ~~~~~~y~~~eef~~dgVvY~E~Rt~~p~l~~~~G~~t~e~~v~~~~~~~e~~~~------------------------- 172 (399)
T KOG1097|consen 118 AFRDYAYEALEEFAEDGVVYLEVRTYPPQLYTADGDITPEDVVAIVIAALEKAKR------------------------- 172 (399)
T ss_pred HHHHHHHHHHHHHHHcCceEEEEEccCchhhhcCCCCCHHHHHHHHHHHHHHHHH-------------------------
Confidence 999999999999999999999999 7888888888 9999999999999998754
Q ss_pred cCCCCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhh---CCCceEEEecCCCC-CCCChhhHHHHHHHHHHcCCceeeecC
Q 017943 151 NGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEM---RDLGVVGIDLSGNP-TKGEWTTFLPALKFAREQGLQITLHCG 226 (363)
Q Consensus 151 ~~~~~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~---~~~~vvGidl~g~e-~~~~~~~~~~~~~~A~~~gl~~~~Hag 226 (363)
++||.+++|+|+.|+.+++.+.+++..+.+. .+..|+||||+|+| .++++..|.+++..+++.|+++|+|||
T Consensus 173 ----~fpI~sklI~~~~R~~~~e~~~e~v~~~~~~~~~~~~~VvGidL~G~e~~~~p~~~f~~vl~~~~~~gi~~t~HaG 248 (399)
T KOG1097|consen 173 ----DFPIKSKLIMCCIRHMPPEVAEETVSEAKELNKLFPNFVVGIDLVGQEDLGGPLSLFLEVLAKAPAKGIHLTFHAG 248 (399)
T ss_pred ----hCCCcceEEEeeccCCChHHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCCCChhhhHHHHHhhhhcCCcEEEEcc
Confidence 6779999999999999999999999988873 35679999999999 668889999999999999999999999
Q ss_pred CCC-ChhhHHHHHh-cCCCeeeEeccc--CHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCC
Q 017943 227 EIP-NKEEIQSMLD-FLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTD 302 (363)
Q Consensus 227 E~~-~~~~i~~~l~-~g~~rigHg~~~--~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TD 302 (363)
|+. +++.++++++ +|++|||||+.+ +|.++.++++++|++|+||+||+.++.+++++.||+..|+++|+|++||||
T Consensus 249 E~~~~~~~v~~~LD~l~~~RIGHG~~l~~dp~L~~~~k~~nI~lEiCP~SN~vl~~v~d~rnhp~~~~~~~~vP~vI~sD 328 (399)
T KOG1097|consen 249 ETNGGASVVKNALDLLGTERIGHGYFLTKDPELINLLKSRNIALEICPISNQVLGLVSDLRNHPVARLLAAGVPVVINSD 328 (399)
T ss_pred ccCCChHHHHHHHHhhCCccccCceeccCCHHHHHHHHhcCceEEEccchhhheeccccccccHHHHHHhCCCCEEEeCC
Confidence 994 7788899999 899999999987 578899999999999999999999999999999999999999999999999
Q ss_pred CCCccC-CChHHHHHHHHHHCC--CCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhc
Q 017943 303 DSGVFS-TSVSREYDLAASAFS--LGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEKKL 361 (363)
Q Consensus 303 d~~~~~-~~l~~E~~~~~~~~~--l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~~~ 361 (363)
||++|+ ..|+.|++.+....+ +|.++++++++||+++||+++++|++++++|...+.+|
T Consensus 329 DP~~f~~~~Lt~dfy~A~~~~~~~~~~~~l~~la~nai~~S~l~eeek~~~l~~~~~~~~~~ 390 (399)
T KOG1097|consen 329 DPGFFGAAPLTLDFYLAFLGIAPNLDLRELKRLALNAIKYSFLSEEEKNELLERVQKSWDKY 390 (399)
T ss_pred CcccccCccccHHHHHHHHhccccCCHHHHHHHHHHHhhhccCCHHHHHHHHHHHhhccccc
Confidence 999999 579999999999876 99999999999999999999999999999999887765
No 5
>PRK09358 adenosine deaminase; Provisional
Probab=100.00 E-value=7.3e-65 Score=492.13 Aligned_cols=327 Identities=34% Similarity=0.486 Sum_probs=294.6
Q ss_pred ChhhhhCCcchhccccCCCCCHHHHHHHHHHhccCCCCCcc-chHHH---H-hhcCCCHHHHHHhhhHHHhhcCCHHHHH
Q 017943 1 MEWFASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFS-DVEHV---I-MKSDRSLHEVFKLFDLIHVLTTDHATVT 75 (363)
Q Consensus 1 ~~f~~~lPK~eLH~HL~Gsi~~~~l~~la~~~~~~~~~~~~-~~~~~---~-~~~~~~l~~f~~~f~~~~~~~~~~e~~~ 75 (363)
.+|+++|||+|||+||+||++++|+++|++ ++|+.++. +.+++ . ...+.+|.+||..|.++..++.|+++++
T Consensus 4 ~~~~~~lpK~eLH~Hl~Gs~~~~~l~~l~~---~~~~~~p~~~~~~~~~~r~~~~~~~l~~~l~~~~~~~~~~~t~ed~~ 80 (340)
T PRK09358 4 LMIIRSLPKAELHLHLDGSLRPETILELAR---RNGIALPATDVEELPWVRAAYDFRDLQSFLDKYDAGVAVLQTEEDLR 80 (340)
T ss_pred hHHHhcCCceeEEecccCCCCHHHHHHHHH---HcCCCCCCCCHHHHhhhcccccCCCHHHHHHHHHHHHHHhCCHHHHH
Confidence 379999999999999999999999999999 57776542 33333 2 1235689999999999988999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 017943 76 RITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (363)
Q Consensus 76 ~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (363)
+.++..+++++++||+|+|+|++|..+...|++.++++++++++++++. .+
T Consensus 81 ~~~~~~~~e~~~~Gvty~E~~~~p~~~~~~gl~~~~~~~a~~~~~~~a~-----------------------------~~ 131 (340)
T PRK09358 81 RLAFEYLEDAAADGVVYAEIRFDPQLHTERGLPLEEVVEAVLDGLRAAE-----------------------------AE 131 (340)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeChhhhhhcCCCHHHHHHHHHHHHHHHH-----------------------------Hh
Confidence 9999999999999999999999998777789999999999999998753 45
Q ss_pred CCcEEEEEEEeeCCCCHHHHHHHHHHHHh-hCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhH
Q 017943 156 KKIYVRLLLSIDRRETTEAAMETVKLALE-MRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEI 234 (363)
Q Consensus 156 ~gi~~~li~~~~r~~~~e~~~~~~~~a~~-~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i 234 (363)
.||+++++++++|..+++.+.+.++.+.+ +.++.++|+|++|+|...+++.|.++++.|+++|+++++|+||+.++.++
T Consensus 132 ~gi~~~li~~~~r~~~~~~~~~~~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~ 211 (340)
T PRK09358 132 FGISVRLILCFMRHFGEEAAARELEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDAGLRLTAHAGEAGGPESI 211 (340)
T ss_pred cCceEEEEEEecCCCCHHHHHHHHHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHH
Confidence 79999999999998888877777777665 35567999999999888888999999999999999999999999887788
Q ss_pred HHHHh-cCCCeeeEeccc--CHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCCh
Q 017943 235 QSMLD-FLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSV 311 (363)
Q Consensus 235 ~~~l~-~g~~rigHg~~~--~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l 311 (363)
.++++ +|++|||||+++ +++++++|+++||++++||+||++++.++++..||+++|+++||||+||||||++++++|
T Consensus 212 ~~al~~lg~~ri~Hg~~l~~~~~~~~~l~~~gi~v~~cP~Sn~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~~~l 291 (340)
T PRK09358 212 WEALDELGAERIGHGVRAIEDPALMARLADRRIPLEVCPTSNVQTGAVPSLAEHPLKTLLDAGVRVTINTDDPLVFGTTL 291 (340)
T ss_pred HHHHHHcCCcccchhhhhccCHHHHHHHHHcCCeEEECCCccccccccCCcccChHHHHHHCCCEEEECCCCCcccCCCH
Confidence 88887 899999999998 477899999999999999999999998888888999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 017943 312 SREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 359 (363)
Q Consensus 312 ~~E~~~~~~~~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~ 359 (363)
++||+.+++.+|++.+++.++++||+++||+++++|++|+++++++.+
T Consensus 292 ~~e~~~~~~~~~l~~~el~~l~~nai~~sf~~~~~k~~l~~~~~~~~~ 339 (340)
T PRK09358 292 TEEYEALAEAFGLSDEDLAQLARNALEAAFLSEEEKAALLAEVDAWLA 339 (340)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998765
No 6
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=100.00 E-value=3e-65 Score=487.19 Aligned_cols=293 Identities=43% Similarity=0.665 Sum_probs=275.6
Q ss_pred CCcchhccccCCCCCHHHHHHHHHHhccCCCCCccchHHHHhhcCCCHHHHHHhhhHHHhhcCCHHHHHHHHHHHHHHHH
Q 017943 7 MPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFA 86 (363)
Q Consensus 7 lPK~eLH~HL~Gsi~~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~f~~~~~~~~~~e~~~~~~~~~~~~~~ 86 (363)
|||+|||+||+||++++|+++|+++ +|++.|..+..++++.+++++++++++++++
T Consensus 1 lPK~eLH~Hl~Gsi~~~~l~~l~~~------------------------~f~~~f~~~~~~l~~~~~l~~~~~~~~~~~~ 56 (305)
T cd00443 1 LPKVELHAHLSGSISPETLLELIKK------------------------EFFEKFLLVHNLLQKGEALARALKEVIEEFA 56 (305)
T ss_pred CCceeEEecCcCCCCHHHHHHHHHH------------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999981 7999999999999999999999999999999
Q ss_pred hcCCeEEEEeeCCCccccC-CCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC-cEEEEEE
Q 017943 87 SENIVYLELRTTPKRNESI-GMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK-IYVRLLL 164 (363)
Q Consensus 87 ~~gV~y~E~r~~p~~~~~~-g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-i~~~li~ 164 (363)
+|||+|+|+|++|+.+... |++.+++++++.++++++++ ..| |.+++|+
T Consensus 57 ~d~V~Y~E~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~I~~~lI~ 107 (305)
T cd00443 57 EDNVQYLELRTTPRLLETEKGLTKEQYWLLVIEGISEAKQ-----------------------------WFPPIKVRLIL 107 (305)
T ss_pred HcCCEEEEEEcchhhcCcccCCCHHHHHHHHHHHHHHHHH-----------------------------HcCCeeEeEEE
Confidence 9999999999999987666 99999999999999988643 345 9999999
Q ss_pred EeeCCCCHH----HHHHHHHHHHhhCCCceEEEecCCCCCCC--ChhhHHHHHHHHHHcC-CceeeecCCCCChhhHHHH
Q 017943 165 SIDRRETTE----AAMETVKLALEMRDLGVVGIDLSGNPTKG--EWTTFLPALKFAREQG-LQITLHCGEIPNKEEIQSM 237 (363)
Q Consensus 165 ~~~r~~~~e----~~~~~~~~a~~~~~~~vvGidl~g~e~~~--~~~~~~~~~~~A~~~g-l~~~~HagE~~~~~~i~~~ 237 (363)
|++|+.+++ .+.+.++++.++.+ .|+|||++|+|... ++..|.++|..|++.| +++|+|+||+++++.+.++
T Consensus 108 ~~~R~~~~~~~~~~~~~~~~l~~~~~~-~vvG~Dl~g~E~~~~~~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~~v~~~ 186 (305)
T cd00443 108 SVDRRGPYVQNYLVASEILELAKFLSN-YVVGIDLVGDESKGENPLRDFYSYYEYARRLGLLGLTLHCGETGNREELLQA 186 (305)
T ss_pred EEeCCCChhhhhhhHHHHHHHHHHhcC-CEEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCcceEEeecCCCChHHHHHH
Confidence 999999998 89999999998766 69999999999887 8899999999999999 9999999999888889998
Q ss_pred HhcCCCeeeEecccC--HHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCChHHHH
Q 017943 238 LDFLPQRIGHACCFE--EEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREY 315 (363)
Q Consensus 238 l~~g~~rigHg~~~~--~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~ 315 (363)
+.++++|||||+++. |++++++++++|++++||+||+.++.+.++..||+++|+++|+||+||||||++++++|++||
T Consensus 187 ~~~~~~RIgHg~~~~~~p~~~~~l~~~~i~ie~CP~SN~~~~~~~~~~~hP~~~~~~~G~~v~i~TDd~~~~~~~l~~E~ 266 (305)
T cd00443 187 LLLLPDRIGHGIFLLKHPELIYLVKLRNIPIEVCPTSNVVLGTVQSYEKHPFMRFFKAGLPVSLSTDDPGIFGTSLSEEY 266 (305)
T ss_pred HHhccceeeceEecCCCHHHHHHHHHcCCEEEECcchhhhhcCCCChhhChHHHHHHCCCeEEEeCCCCcccCCChHHHH
Confidence 886799999999985 599999999999999999999999998888899999999999999999999999999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 017943 316 DLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEI 353 (363)
Q Consensus 316 ~~~~~~~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~ 353 (363)
+.++..+|+|.+|+.+|++||+++||+++++|++|++.
T Consensus 267 ~~~~~~~~l~~~~l~~l~~nsi~~sf~~~~~K~~l~~~ 304 (305)
T cd00443 267 SLAAKTFGLTFEDLCELNRNSVLSSFAKDEEKKSLLEV 304 (305)
T ss_pred HHHHHHcCcCHHHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 99999999999999999999999999999999998764
No 7
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.4e-65 Score=483.73 Aligned_cols=329 Identities=31% Similarity=0.458 Sum_probs=306.5
Q ss_pred hhhhhCCcchhccccCCCCCHHHHHHHHHHhccCCCCCc------cchHHHHhh--cCCCHHHHHHhhhHHHhhcCCHHH
Q 017943 2 EWFASMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVF------SDVEHVIMK--SDRSLHEVFKLFDLIHVLTTDHAT 73 (363)
Q Consensus 2 ~f~~~lPK~eLH~HL~Gsi~~~~l~~la~~~~~~~~~~~------~~~~~~~~~--~~~~l~~f~~~f~~~~~~~~~~e~ 73 (363)
++++.+||+|||+||+|+++|++++++++ ++|+..+ ..++++... ...++++|++.|.+...+++++++
T Consensus 6 ~~~~~~pkaelH~HL~g~l~p~~v~~la~---r~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~fl~~~y~~~~v~~~~~~ 82 (345)
T COG1816 6 ELIRHLPKAELHRHLEGSLRPELVLELAR---RYGIALPPAEFDETILEELRAEYNKFNDLQEFLEKYYRGASVLRTEED 82 (345)
T ss_pred HHHhhchhhHhhhcccCCcCHHHHHHHHH---HhCccCCcccccchhHHHHHHHHhccccHHHHHHHHHHHHHhhccHHH
Confidence 57899999999999999999999999999 4777542 122333322 256999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCC
Q 017943 74 VTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGT 153 (363)
Q Consensus 74 ~~~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (363)
+++++++++++++++|++|+|+||+|+.++..|++.+.+++++.++++.+ .
T Consensus 83 ~~~la~~~~~~~~~~~~vy~Ei~f~p~~~t~~~l~~~~~~e~~~~~~~~~-----------------------------~ 133 (345)
T COG1816 83 FYRLAYEYLEDAAADNVVYAEIRFDPYLHTKRGLSVDTVVEGLIAGFRPA-----------------------------E 133 (345)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCcchhhhccCCHHHHHHHHHHHHHHH-----------------------------h
Confidence 99999999999999999999999999889999999999999999999875 3
Q ss_pred CCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhh
Q 017943 154 RGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEE 233 (363)
Q Consensus 154 ~~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~ 233 (363)
.++|+..++|+|+.|+.+++.+.+.++.+.+++.+.++|+|+.|+|...++..|..+|+.+|++|+++|.||||.++++.
T Consensus 134 ~~~gi~s~li~~~~r~~~~e~~~~~~~~a~~~~~~~~~~~~l~~~e~~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~ 213 (345)
T COG1816 134 RDFGIHSKLIVCLLRHLGFESADEELELALRYRDKLVTGVGLAGSESGYPPELFVSLFKLARDNGLKLTIHAGEAGGPES 213 (345)
T ss_pred hccCCccceEEEEEeecCHHHHHHHHHHHhhcccccCccCCCCcccccCCHHHHHHHHHHHHHcCceEEEeccccCCcHH
Confidence 57899999999999999999999999999999888788999999999999999999999999999999999999999999
Q ss_pred HHHHHh-cCCCeeeEeccc--CHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCC
Q 017943 234 IQSMLD-FLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTS 310 (363)
Q Consensus 234 i~~~l~-~g~~rigHg~~~--~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~ 310 (363)
+++++. ++++|||||+.+ +++++++++++||++++||+||++++.++++..||+++|+++||+||||||||++|+++
T Consensus 214 i~~al~~~~~~rI~HGi~~~~d~~L~~~l~~~qI~levCP~SNi~~~~v~~~~~hPf~~~~d~Gv~VsLnTDdp~~f~~~ 293 (345)
T COG1816 214 IRDALDLLGAERIGHGIRAIEDPELLYRLAERQIPLEVCPLSNIQLGVVPSLAKHPFKKLFDAGVKVSLNTDDPLYFGTP 293 (345)
T ss_pred HHHHHHHhchhhhccccccccCHHHHHHHHHhCCeeEECCcchhhcccccchhhCcHHHHHHcCCceEEcCCChhhcCCc
Confidence 999987 699999999976 68999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhcC
Q 017943 311 VSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEKKLD 362 (363)
Q Consensus 311 l~~E~~~~~~~~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~~~~ 362 (363)
+..||..++..++++.+|+.++++||++.||+++++|..|+.++.+..+++|
T Consensus 294 l~~Ey~~aa~~~~l~~~dl~~~arnav~~af~~~~~K~~ll~~~~~~~~~~~ 345 (345)
T COG1816 294 LIEEYLVAAQIYGLSREDLCELARNAVEAAFISEEEKAALLGKVLKTSIAHN 345 (345)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHHccCChHHHHHHHHHHHhhHHhcC
Confidence 9999999999999999999999999999999999999999999999887765
No 8
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=100.00 E-value=6.2e-62 Score=468.69 Aligned_cols=316 Identities=32% Similarity=0.481 Sum_probs=286.6
Q ss_pred CCcchhccccCCCCCHHHHHHHHHHhccCCCCCcc---chHHHHhh-c-CCCHHHHHHhhhHHHhhcCCHHHHHHHHHHH
Q 017943 7 MPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFS---DVEHVIMK-S-DRSLHEVFKLFDLIHVLTTDHATVTRITQEV 81 (363)
Q Consensus 7 lPK~eLH~HL~Gsi~~~~l~~la~~~~~~~~~~~~---~~~~~~~~-~-~~~l~~f~~~f~~~~~~~~~~e~~~~~~~~~ 81 (363)
|||+|||+||+|||+++|+++++++ +|+.++. +.+++... . +.+|.+|++.|.++..++.+++++++.++++
T Consensus 1 lpK~eLH~Hl~Gsi~~~~l~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~t~e~l~~~~~~~ 77 (324)
T TIGR01430 1 LPKAELHLHLEGSIRPETLLELAQK---NGIPLPADLQSGEELKEAYDKFRDLQDFLAKYDFGVEVLRTEDDFKRLAYEY 77 (324)
T ss_pred CCceeeEecccCCCCHHHHHHHHHH---cCCCCCCCcccHHHHHhhhccCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7999999999999999999999994 6665432 33444322 2 5789999999999999999999999999999
Q ss_pred HHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEE
Q 017943 82 VEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVR 161 (363)
Q Consensus 82 ~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~ 161 (363)
+++++++||+|+|+|++|..+...|++.+++++++++++++++ .+.|++++
T Consensus 78 ~~e~~~~Gv~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~-----------------------------~~~gi~~~ 128 (324)
T TIGR01430 78 VEKAAKDGVVYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAE-----------------------------RDFGIKSR 128 (324)
T ss_pred HHHHHHcCCEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHH-----------------------------HhcCCeEE
Confidence 9999999999999999998877889999999999999998764 35789999
Q ss_pred EEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHH-hc
Q 017943 162 LLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSML-DF 240 (363)
Q Consensus 162 li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l-~~ 240 (363)
+|++++|+.+++.+.+.++.+.+++.+.++|+|+.|.+...+++.+..+++.|+++|+++++|+||+.++.++..++ .+
T Consensus 129 li~~~~r~~~~~~~~~~~~~~~~~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~ 208 (324)
T TIGR01430 129 LILCGMRHKQPEAAEETLELAKPYKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDL 208 (324)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhhccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHc
Confidence 99999999999999999999998877679999999988777889999999999999999999999987776677776 48
Q ss_pred CCCeeeEeccc--CHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCChHHHHHHH
Q 017943 241 LPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLA 318 (363)
Q Consensus 241 g~~rigHg~~~--~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~ 318 (363)
|++|||||+++ +++++++|+++||++++||+||+.++.+.++..||+++|+++||||+||||||++++++|++||+.+
T Consensus 209 g~~ri~Hg~~l~~~~~~i~~l~~~gi~v~~cP~Sn~~l~~~~~~~~~pi~~l~~~Gv~v~igTD~~~~~~~~l~~e~~~a 288 (324)
T TIGR01430 209 GATRIGHGVRALEDPELLKRLAQENITLEVCPTSNVALGVVKSLAEHPLRRFLEAGVKVTLNSDDPAYFGSYLTEEYEIA 288 (324)
T ss_pred CchhcchhhhhccCHHHHHHHHHcCceEEECCcccccccccCCcccChHHHHHHCCCEEEECCCCCcccCCCHHHHHHHH
Confidence 99999999999 6789999999999999999999999987777789999999999999999999999999999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 017943 319 ASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEIF 354 (363)
Q Consensus 319 ~~~~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~ 354 (363)
.+.+|++++|+.+++.||++++|+++++|++|++++
T Consensus 289 ~~~~~l~~~el~~~~~na~~~~f~~~~~k~~l~~~~ 324 (324)
T TIGR01430 289 AKHAGLTEEELKQLARNALEGSFLSDDEKKELLAKL 324 (324)
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhhC
Confidence 999999999999999999999999999999998764
No 9
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=100.00 E-value=3.7e-58 Score=442.62 Aligned_cols=317 Identities=36% Similarity=0.532 Sum_probs=283.8
Q ss_pred hCCcchhccccCCCCCHHHHHHHHHHhccCCCCCcc-ch---HHHHh-hcCCCHHHHHHhhhHHHhhcCCHHHHHHHHHH
Q 017943 6 SMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFS-DV---EHVIM-KSDRSLHEVFKLFDLIHVLTTDHATVTRITQE 80 (363)
Q Consensus 6 ~lPK~eLH~HL~Gsi~~~~l~~la~~~~~~~~~~~~-~~---~~~~~-~~~~~l~~f~~~f~~~~~~~~~~e~~~~~~~~ 80 (363)
+|||||||+||+||++++|+++++++ +|...+. .. +.+.. ....+|.+||..|.++..+..++++++..++.
T Consensus 1 ~lpK~elH~Hl~Gs~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ed~~~~~~~ 77 (325)
T cd01320 1 NLPKAELHLHLDGSLRPETILELAKK---NGITLPASDVELLELVVAAYNFSDLQDFLAKYDFGLSVLQTEEDFERLAYE 77 (325)
T ss_pred CCCceEEeecccCCCCHHHHHHHHHH---hCCCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 58999999999999999999999994 6654432 11 11111 24568999999999998888899999999999
Q ss_pred HHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEE
Q 017943 81 VVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYV 160 (363)
Q Consensus 81 ~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 160 (363)
.+++++++||+|+|+|++|..+...|++.++++++++++++++. .+.|+++
T Consensus 78 ~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~-----------------------------~~~gi~~ 128 (325)
T cd01320 78 YLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAE-----------------------------AEFGIKA 128 (325)
T ss_pred HHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHH-----------------------------HhcCCeE
Confidence 99999999999999999998777789999999999999998864 3578999
Q ss_pred EEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHh-
Q 017943 161 RLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD- 239 (363)
Q Consensus 161 ~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~- 239 (363)
++++++.|..+++.+.+.++.+.++..+.++|+|++|.+...+++.+.++++.|+++|+++++|+||..++..+.++++
T Consensus 129 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~ 208 (325)
T cd01320 129 RLILCGLRHLSPESAQETLELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDL 208 (325)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHH
Confidence 9999999988888899999999888777799999999887678899999999999999999999999877777778887
Q ss_pred cCCCeeeEeccc--CHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCChHHHHHH
Q 017943 240 FLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDL 317 (363)
Q Consensus 240 ~g~~rigHg~~~--~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~ 317 (363)
+|++|++||+++ +++++++|+++||++++||+||+.++...++..||+++|+++||+|+||||+|++++++|++||+.
T Consensus 209 ~g~~~i~H~~~l~~~~~~~~~l~~~gi~v~~~P~sn~~l~~~~~~~~~p~~~l~~~Gv~v~lgTD~~~~~~~~~~~e~~~ 288 (325)
T cd01320 209 LGAERIGHGIRAIEDPELVKRLAERNIPLEVCPTSNVQTGAVKSLAEHPLRELLDAGVKVTINTDDPTVFGTYLTDEYEL 288 (325)
T ss_pred cCCcccchhhccCccHHHHHHHHHcCCeEEECCCccccccccCCcccChHHHHHHCCCEEEECCCCCcccCCCHHHHHHH
Confidence 899999999999 577999999999999999999999987666668999999999999999999999989999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 017943 318 AASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEIF 354 (363)
Q Consensus 318 ~~~~~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~ 354 (363)
+++.+|++++++.+++.||++++|+++++|+++++.+
T Consensus 289 ~~~~~~l~~~el~~~~~na~~~~f~~~~~k~~~~~~~ 325 (325)
T cd01320 289 LAEAFGLTEEELKKLARNAVEASFLSEEEKAELLKRI 325 (325)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhhC
Confidence 9999999999999999999999999999999998753
No 10
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=100.00 E-value=2e-58 Score=460.28 Aligned_cols=332 Identities=23% Similarity=0.263 Sum_probs=280.5
Q ss_pred hhhhhCCc-chhccccCCCCCHHHHHHHHHHh-------ccCCCCC--c--------------cchHH------------
Q 017943 2 EWFASMPK-VELHAHLNGSIRDSTLLELARVL-------GEKGVIV--F--------------SDVEH------------ 45 (363)
Q Consensus 2 ~f~~~lPK-~eLH~HL~Gsi~~~~l~~la~~~-------~~~~~~~--~--------------~~~~~------------ 45 (363)
.++++||| +-||+|+++.++.++|++-+... ..++... | ..+..
T Consensus 72 ~i~~~MPKG~~LH~H~~a~~~~d~li~~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~w~~~~~~r~~~~~~~f~~ 151 (479)
T TIGR01431 72 KIISSMPKGGALHLHDLAIVSTDWLIKNLTYRDNLWVCQGKGNKEVLRFRFPKPKPDQCDCKWELLEDVRKSHNAEEFDD 151 (479)
T ss_pred HHHHhCCCchhhccCccccCCHHHHHHHHhCCCCeEEEecCCCceeEEEEeccCCCCCCCceeeeHHHHHHhCCHHHHHH
Confidence 47899999 89999999999999999544321 1111100 0 00011
Q ss_pred -HHh------hcC--------CCHHHHHHhhhHHHhhcCCHHHHHHHHHHHHHHHHhcCCeEEEEeeCCC-ccccCC--C
Q 017943 46 -VIM------KSD--------RSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPK-RNESIG--M 107 (363)
Q Consensus 46 -~~~------~~~--------~~l~~f~~~f~~~~~~~~~~e~~~~~~~~~~~~~~~~gV~y~E~r~~p~-~~~~~g--~ 107 (363)
+.. ..+ .-|..|++.|..+..+++++++++++++++++++++|||+|+|+|++|. .+...| +
T Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~~W~~F~~~f~~~~~ll~y~p~~~~~~~~~l~d~~~DgV~Y~ElR~~p~~~~~~~G~~~ 231 (479)
T TIGR01431 152 YLRENFTLYTTVPELDYPTINEVWERFGSIFALLDGLLFYAPSWRDYYYRALEEFYADNVQYLELRSTLFILYELEGTSH 231 (479)
T ss_pred HHHHhcccCcCCcccccCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHcCCEEEEEEecCchHhhcCCCCC
Confidence 100 001 1278899999999999999999999999999999999999999999994 454555 4
Q ss_pred CHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhC-
Q 017943 108 SKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMR- 186 (363)
Q Consensus 108 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~- 186 (363)
+.+++++++.++++++++.++ .++.+++|+|.+|+.+++.+.+.++.|.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~---------------------------~fi~~rlI~~~~R~~~~~~~~~~~~~a~~~k~ 284 (479)
T TIGR01431 232 DEEDSVRIYKEVTEKFMAEHP---------------------------DFIGSKLIYSPLRNKDKEELDNYIKVAMELKE 284 (479)
T ss_pred CHHHHHHHHHHHHHHHHHhCC---------------------------CCeEEEEEEEccCCCCHHHHHHHHHHHHHHHh
Confidence 788999999999998865322 2589999999999999999999999999874
Q ss_pred --CCceEEEecCCCCC-CCChhhHHHHHHH-HHHcCCceeeecCCCC-----ChhhHHHHHhcCCCeeeEeccc--CHHH
Q 017943 187 --DLGVVGIDLSGNPT-KGEWTTFLPALKF-AREQGLQITLHCGEIP-----NKEEIQSMLDFLPQRIGHACCF--EEEE 255 (363)
Q Consensus 187 --~~~vvGidl~g~e~-~~~~~~~~~~~~~-A~~~gl~~~~HagE~~-----~~~~i~~~l~~g~~rigHg~~~--~~~~ 255 (363)
++.|+||||+|+|. +.++..|.+.|.. +++.|+++++||||+. .++++.+|+.+|++|||||+.+ +|++
T Consensus 285 ~~p~~vvGfDL~G~E~~g~pl~~f~~~~~~~~~~~gl~~t~HAGE~~~~g~~~d~nl~dAIlLg~~RIGHG~~l~~~P~l 364 (479)
T TIGR01431 285 KYPDFVAGFDLVGQEDKGRSLLDFIDALLGPSDKEKLPYFFHAGETNWQGTTVDENLIDALLLNTTRIGHGFALVKHPLV 364 (479)
T ss_pred hCCCeEEEEeccCCCCCCCCHHHHHHHHHHHHHhCCCCEEEecCCcCCCCCCchhHHHHHHHcCCccccCcccccCCHHH
Confidence 34699999999995 5688999999874 5559999999999986 2467889998899999999987 5899
Q ss_pred HHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccC-CChHHHHHHHHHHCC---CCHHHHHH
Q 017943 256 WRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASAFS---LGRREMFQ 331 (363)
Q Consensus 256 ~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~-~~l~~E~~~~~~~~~---l~~~~l~~ 331 (363)
++++++++|++|+||+||..++.++++..||++.|+++||||+||||||++++ ++|++||+.+.+.++ ++.+++++
T Consensus 365 ~~~vke~~I~lEvCP~SN~~l~~v~~~~~HPl~~lla~Gvpv~InSDDP~~~~~t~Ls~ef~~a~~~~~~~~~~l~~L~~ 444 (479)
T TIGR01431 365 LQMLKERNIAVEVNPISNQVLQLVADLRNHPCAYLFADNYPMVISSDDPAFWGATPLSHDFYIAFMGLASAKADLRTLKQ 444 (479)
T ss_pred HHHHHHhCCeEEECccchhhhcccCCcccChHHHHHHCCCcEEEeCCCccccCCCCchHHHHHHHHHhcccCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 589999999999988 79999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhh
Q 017943 332 LAKSAVKFIFANGRVKEDLKEIFDLAEKK 360 (363)
Q Consensus 332 l~~na~~~sf~~~~~K~~l~~~~~~~~~~ 360 (363)
|++|||++||+++++|++++++|+.-|.+
T Consensus 445 la~NSi~~Sfl~~~eK~~~~~~~~~~W~~ 473 (479)
T TIGR01431 445 LALNSIKYSALSEEEKRTALAKWQKQWDK 473 (479)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998887776654
No 11
>cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring. AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway.
Probab=100.00 E-value=4.6e-33 Score=276.27 Aligned_cols=311 Identities=21% Similarity=0.253 Sum_probs=215.0
Q ss_pred hhhCCcchhccccCCCCCHHHHHHHHHHh-ccCCCCC-------ccchHHHHh-----------------hcCCC---HH
Q 017943 4 FASMPKVELHAHLNGSIRDSTLLELARVL-GEKGVIV-------FSDVEHVIM-----------------KSDRS---LH 55 (363)
Q Consensus 4 ~~~lPK~eLH~HL~Gsi~~~~l~~la~~~-~~~~~~~-------~~~~~~~~~-----------------~~~~~---l~ 55 (363)
|.+.+|||.|+|+++|+....|+++.++- .+.+... ..++.+++. ....+ ++
T Consensus 55 fyn~~KVD~~vh~s~cm~~k~Ll~FI~~k~~~~pd~vv~~~~g~~~TL~e~f~~l~~~~~~ltvd~L~~~a~~~~~~rfd 134 (496)
T cd01319 55 FYNVRKVDTHVHHSACMNQKHLLRFIKKKLRTEPDEVVIFRDGKKLTLKEVFDSLKLTAYDLSVDTLDVHADRNTFHRFD 134 (496)
T ss_pred ceeCceecccccccccCCHHHHHHHHHHHHHcCCCcEEECCCCccccHHHHHHHcCCChhhCchhhcCcCCCCCcccccc
Confidence 45689999999999999999999987652 1111100 112222221 00011 11
Q ss_pred HH------------HHhhhHHHhhcCCHHHHHHHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhh
Q 017943 56 EV------------FKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAV 123 (363)
Q Consensus 56 ~f------------~~~f~~~~~~~~~~e~~~~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~ 123 (363)
.| .+.|-.+...+. =+-+.++++++++++-....+++|.|++. .|-+.+++ +-+.+=+..-
T Consensus 135 ~fn~kynp~g~~~Lr~iFLktdn~~~-G~y~Ael~k~v~~~le~~kyq~~E~rlsi-----yG~~~~Ew-~~lA~W~~~~ 207 (496)
T cd01319 135 KFNLKYNPIGESRLREIFLKTDNYIN-GRYLAEITKEVFSDLEESKYQHAEYRLSI-----YGRSKDEW-DKLASWVVDN 207 (496)
T ss_pred ccccccCccchHHHHHHHhccCCCcc-hHhHHHHHHHHHHHHHhccceeEEEEEEE-----eCCCHHHH-HHHHHHHHHc
Confidence 11 111211112222 24467899999999999999999999974 46666653 3322222111
Q ss_pred hhccccccccccccccccccccccccccCCCCCCcEEEEEEEeeCCCCHHH-------HHHHHHHHHh-h-----CC---
Q 017943 124 SAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEA-------AMETVKLALE-M-----RD--- 187 (363)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~~~r~~~~e~-------~~~~~~~a~~-~-----~~--- 187 (363)
+... -.+|+++.+.|-.+.-. -.++++.... + .+
T Consensus 208 ----------------------------~l~s--~n~rW~iqipR~y~~~~~~g~~~~Fq~~L~nIF~PLfeat~~P~~~ 257 (496)
T cd01319 208 ----------------------------DLFS--PNVRWLIQIPRLYDVYKKSGIVNSFQEMLENIFEPLFEATKDPSSH 257 (496)
T ss_pred ----------------------------CCCC--CCceEEEecchhHHHHhhcCCcCCHHHHHHHHHHHHHHHhcCcccC
Confidence 0111 25789999998654211 2233332221 0 11
Q ss_pred -------CceEEEecCCCCCCC---------Chhh----------------HHH--HH-HHHHHcC---CceeeecCCCC
Q 017943 188 -------LGVVGIDLSGNPTKG---------EWTT----------------FLP--AL-KFAREQG---LQITLHCGEIP 229 (363)
Q Consensus 188 -------~~vvGidl~g~e~~~---------~~~~----------------~~~--~~-~~A~~~g---l~~~~HagE~~ 229 (363)
..|+|||.+.+|... .|.. +.. .+ ...++.| +.++.||||.+
T Consensus 258 p~l~~fL~~v~gfd~VddEs~~~~~~~~~~p~P~~w~~~~nPpy~Yy~YY~yaNi~~LN~~R~~rglntf~~r~HaGE~g 337 (496)
T cd01319 258 PELHVFLQQVIGFDSVDDESKSERRFTRKFPKPEEWTSEENPPYSYYLYYMYANITTLNSFRKARGFNTFVLRPHCGEAG 337 (496)
T ss_pred HHHHHHHHhCCceEEEcCCCccccCCCcCCCChhcCCCCCCCCceeeHHHHHHHHHHHHHHHHHcCCCCcceeeecCCCC
Confidence 148999998776531 0110 000 11 1223444 68999999999
Q ss_pred ChhhHHHHHhcCCCeeeEeccc--CHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCcc
Q 017943 230 NKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVF 307 (363)
Q Consensus 230 ~~~~i~~~l~~g~~rigHg~~~--~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~ 307 (363)
+++++.+++ ++++|||||+.+ ++.++.++.+++|++|+||+||..+ +.++..||++.|+++|+||+||||||++|
T Consensus 338 ~~~~l~~al-L~adRIGHGv~l~~dp~L~~l~~~~qI~levCPlSN~~l--~~~~~~HP~~~~l~~Gl~VsInTDDPl~f 414 (496)
T cd01319 338 DIDHLASAF-LLAHGISHGINLRKVPVLQYLYYLTQIGIAMSPLSNNSL--FLSYEKNPFPEFFKRGLNVSLSTDDPLQF 414 (496)
T ss_pred ChHHHHHHh-hcCcccccccccCCCHHHHHHHHHcCCeEEEecCccHhh--hcCcccChHHHHHHCCCeEEEeCCCchhh
Confidence 998898888 899999999987 5677778889999999999999865 56778899999999999999999999999
Q ss_pred CC---ChHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 017943 308 ST---SVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEIF 354 (363)
Q Consensus 308 ~~---~l~~E~~~~~~~~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~ 354 (363)
++ +|++||..+++.+|+|.+|+.++++||+++||+++++|+.|+..+
T Consensus 415 ~~t~~~L~eEY~~a~~~~~Ls~~Dl~eLarNSV~~Sf~~~~~K~~~l~~~ 464 (496)
T cd01319 415 HFTKEPLMEEYSIAAQVWKLSTCDMCELARNSVLQSGFEHSIKRHWLGPN 464 (496)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 86 599999999999999999999999999999999999999999775
No 12
>PLN03055 AMP deaminase; Provisional
Probab=99.98 E-value=3.1e-31 Score=266.11 Aligned_cols=309 Identities=17% Similarity=0.210 Sum_probs=214.3
Q ss_pred hhCCcchhccccCCCCCHHHHHHHHHHh-ccCCCCC-------ccchHHHHh-----------------hcCCCHH----
Q 017943 5 ASMPKVELHAHLNGSIRDSTLLELARVL-GEKGVIV-------FSDVEHVIM-----------------KSDRSLH---- 55 (363)
Q Consensus 5 ~~lPK~eLH~HL~Gsi~~~~l~~la~~~-~~~~~~~-------~~~~~~~~~-----------------~~~~~l~---- 55 (363)
.+.=|||.|+|+++|+....|+++.++. .+.+-.. ..++.+++. ....++.
T Consensus 146 yn~rKVDthvh~s~cm~qk~LL~FIk~k~~~~pd~vV~~~~gk~~TL~evfe~l~~~~~dLtVd~Ldvha~~~~fhrfD~ 225 (602)
T PLN03055 146 YNVRKVDTHVHHSSCMNQKHLLRFIKSKLRKEPDEVVIFRDGKYLTLREVFESLDLTGYDLNVDLLDVHADKNTFHRFDK 225 (602)
T ss_pred eeeeEeeccccccccCCHHHHHHHHHHHHHcCCCcEeecCCCcchhHHHHHHHcCCCcccCcccccCccCCCCccccccc
Confidence 3456999999999999999999987652 1111100 112222221 0011111
Q ss_pred -----------HHHHhhhHHHhhcCCHHHHHHHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhh
Q 017943 56 -----------EVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVS 124 (363)
Q Consensus 56 -----------~f~~~f~~~~~~~~~~e~~~~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~ 124 (363)
+-.+.|-.+...+. -+-+.++++++++++-....+++|.|++. .|-+.+++ +.+.+=+...
T Consensus 226 fn~kynp~g~s~Lr~iFLktdN~i~-G~YlAel~k~v~~~le~skyQ~~E~rlsi-----YG~~~~EW-~kLA~W~~~~- 297 (602)
T PLN03055 226 FNLKYNPCGQSRLREIFLKQDNLIQ-GRFLAELTKEVFSDLEASKYQMAEYRISI-----YGRKQSEW-DQLASWIVNN- 297 (602)
T ss_pred ccccCCccchHHHHHHHcCcCCCcc-hhhHHHHHHHHHHHHHhccceeEEEEEEE-----eCCCHHHH-HHHHHHHHHc-
Confidence 11122222222232 35678999999999999999999999974 36665553 2222222111
Q ss_pred hccccccccccccccccccccccccccCCCCCCcEEEEEEEeeCCCCHHH-------HHHHHHHHHh------hCC----
Q 017943 125 AVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEA-------AMETVKLALE------MRD---- 187 (363)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~~~r~~~~e~-------~~~~~~~a~~------~~~---- 187 (363)
.-.--.+|+++.+.|-.+.-. -.++++.... ..+
T Consensus 298 -----------------------------~l~s~n~rW~IqiPRly~~~~~~g~v~~Fqd~L~NIF~PLFeatl~P~~hp 348 (602)
T PLN03055 298 -----------------------------RLYSENVVWLIQLPRLYNVYKEMGIVQSFQQILDNIFKPLFEVTVDPSSHP 348 (602)
T ss_pred -----------------------------CcCCCCceEEEecCcchhhhhcCCCcCCHHHHHHHHHHHHHHHHcCcccCH
Confidence 001125688888888543221 1233332221 011
Q ss_pred ------CceEEEecCCCCCCCC---------hhh-------------------HHHHHHHHHHcC---CceeeecCCCCC
Q 017943 188 ------LGVVGIDLSGNPTKGE---------WTT-------------------FLPALKFAREQG---LQITLHCGEIPN 230 (363)
Q Consensus 188 ------~~vvGidl~g~e~~~~---------~~~-------------------~~~~~~~A~~~g---l~~~~HagE~~~ 230 (363)
..|+|||.+.+|.... |.. +..+=...++.| +.++.||||.++
T Consensus 349 ~L~~fL~~v~gfD~VddEs~~e~~~~~~~~~P~~W~~~~NPpy~Yy~YY~yaNl~~LN~lR~~rglnT~~~rpHAGEag~ 428 (602)
T PLN03055 349 QLHVFLKMVVGFDMVDDESKPERRPTKHMQTPEQWDIPFNPAYSYWAYYVYANLYTLNKLRESKGLNTIKFRPHAGEAGD 428 (602)
T ss_pred HHHHHHHhcCCceeecCCCccccccccCCCChhhCcCCCCCCcchhHHHHHHHHHHHHHHHHHcCCCCCCccccCCCCCC
Confidence 1489999987765310 111 011111233445 778999999998
Q ss_pred hhhHHHHHhcCCCeeeEeccc--CHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccC
Q 017943 231 KEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS 308 (363)
Q Consensus 231 ~~~i~~~l~~g~~rigHg~~~--~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~ 308 (363)
++.+.+++ +|++|||||+.+ +|.++.++.+++|++++||+||.. .+.++..||++.|+++|++|+||||||++|+
T Consensus 429 ~~~v~~al-L~a~RIgHGi~l~~dP~L~yl~~~~qI~LevCPlSN~~--l~~~y~~HP~~~~~~~Gl~VSInTDDPl~f~ 505 (602)
T PLN03055 429 IDHLAAAF-LLAHNIAHGNNLRKSPGLQYLYYLAQIGLAMSPLSNNS--LFLDYHRNPFPMFFARGLNVSLSTDDPLQIH 505 (602)
T ss_pred HHHHHHHh-hCCceecCccccCCCHHHHHHHHHcCCeEEEccCcchh--hccchhhChHHHHHHCCCEEEEcCCCcchhc
Confidence 88888887 899999999987 689999999999999999999984 5678889999999999999999999999999
Q ss_pred C---ChHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 017943 309 T---SVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEI 353 (363)
Q Consensus 309 ~---~l~~E~~~~~~~~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~ 353 (363)
+ .|++||..+++.+++|..|+.++++||+.+||+++++|+.|+..
T Consensus 506 tT~epL~eEY~~aa~~~~LS~~DL~eLarNSV~~Sf~~~~~K~~~lg~ 553 (602)
T PLN03055 506 LTKEPLVEEYSIAAQVWKLSSCDLCEIARNSVLQSGFPHASKKHWVGD 553 (602)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCHHHHHHHhcc
Confidence 6 59999999999999999999999999999999999999999864
No 13
>TIGR01429 AMP_deaminase AMP deaminase. This model describes AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the region included in the model.
Probab=99.98 E-value=2.6e-31 Score=267.56 Aligned_cols=243 Identities=21% Similarity=0.244 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccccccc
Q 017943 72 ATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACN 151 (363)
Q Consensus 72 e~~~~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (363)
+-+.++++++++++-....+++|.|++. .|-+.+++ +.+.+=+..-
T Consensus 273 ~YfAelik~v~~~le~skyQ~~E~rlsi-----yG~~~~EW-~kLA~W~~~~---------------------------- 318 (611)
T TIGR01429 273 KYFAELVKEVFTDLEDSKYQYAEPRLSI-----YGRSPKEW-DSLARWIIDH---------------------------- 318 (611)
T ss_pred hhHHHHHHHHHHHHHhcCceeEEEEEEE-----eCCCHHHH-HHHHHHHHHc----------------------------
Confidence 3467899999999999999999999973 46666553 2222222110
Q ss_pred CCCCCCcEEEEEEEeeCCCCHHH-------HHHHHHHHHh-h------CC---------CceEEEecCCCCCCCC-----
Q 017943 152 GTRGKKIYVRLLLSIDRRETTEA-------AMETVKLALE-M------RD---------LGVVGIDLSGNPTKGE----- 203 (363)
Q Consensus 152 ~~~~~gi~~~li~~~~r~~~~e~-------~~~~~~~a~~-~------~~---------~~vvGidl~g~e~~~~----- 203 (363)
.-.--.+|+++.+.|-.+.-. -.++++.... + .. ..|+|||.+.+|....
T Consensus 319 --~l~s~n~rW~IqiPRly~v~k~~g~v~~Fq~~L~NIF~PLFeat~~P~~~p~L~~fL~~v~GfD~VddEs~~e~~~f~ 396 (611)
T TIGR01429 319 --DVFSPNVRWLIQVPRLYDVYRSKKLVPNFGDMLENVFLPLFEVTKDPSSHPELHLFLQQVTGFDSVDDESKHEDHMFS 396 (611)
T ss_pred --CCCCCCccEEEEcchhHHHHhcCCCcCCHHHHHHHHHHHHHHHhcCCccCHHHHHHHHhccceEEEcCCccccccccc
Confidence 011125688888888644311 1233332221 0 00 1489999876654321
Q ss_pred -----hhhHH-------------------HHHHHHHHcCCc---eeeecCCCCChhhHHHHHhcCCCeeeEeccc--CHH
Q 017943 204 -----WTTFL-------------------PALKFAREQGLQ---ITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEE 254 (363)
Q Consensus 204 -----~~~~~-------------------~~~~~A~~~gl~---~~~HagE~~~~~~i~~~l~~g~~rigHg~~~--~~~ 254 (363)
|..+. .+=...++.|++ ++.||||.++++.+.+++ ++++|||||+.+ ++.
T Consensus 397 ~~~~~P~~w~~~~NPpy~Yy~YY~yaNl~~LN~~R~~rGLnt~~LrpHaGEag~~e~l~~A~-L~adRIgHGi~l~~dp~ 475 (611)
T TIGR01429 397 RKFPSPDEWTSEQNPPYSYYLYYMYANIMVLNNFRRERGLNTFLLRPHCGEAGSVDHLVSAF-LTSHGINHGILLRKVPV 475 (611)
T ss_pred CCCCCcccccCCCCCCceeeHHHHHHHHHHHHHHHHHcCCCccceeecCCCCCCHHHHHHHh-hcCcccccceecCCCHH
Confidence 22111 111223455776 999999999998888887 899999999987 577
Q ss_pred HHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCC---ChHHHHHHHHHHCCCCHHHHHH
Q 017943 255 EWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFST---SVSREYDLAASAFSLGRREMFQ 331 (363)
Q Consensus 255 ~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~---~l~~E~~~~~~~~~l~~~~l~~ 331 (363)
++.++.+++|++++||+||. +.+.++..||+++|+++|++|+||||||++|++ +|++||..+++.+|++.+|+.+
T Consensus 476 L~yl~~~~qI~LevCPtSN~--~l~~~y~~HP~~~~~~~Gl~VSLsTDDPl~f~~T~epL~EEY~~aa~~~~Ls~~Dl~e 553 (611)
T TIGR01429 476 LQYLYYLTQIPIAMSPLSNN--SLFLEYSKNPLPEYLHKGLNVSLSTDDPLQFHYTKEALMEEYAIAAQVWKLSTCDMCE 553 (611)
T ss_pred HHHHHHHcCCeEEEcCCcch--hhccChhhChHHHHHHCCCeEEEcCCCchhhCCCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 88888999999999999998 456778899999999999999999999999985 6999999999999999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHH
Q 017943 332 LAKSAVKFIFANGRVKEDLKEI 353 (363)
Q Consensus 332 l~~na~~~sf~~~~~K~~l~~~ 353 (363)
|++||+.+||+++++|++|+..
T Consensus 554 LarNSV~~S~~~~~~K~~~lg~ 575 (611)
T TIGR01429 554 LARNSVLQSGFEHQVKQHWLGP 575 (611)
T ss_pred HHHHHHHHhCCCHHHHHHHhcC
Confidence 9999999999999999999864
No 14
>PLN02768 AMP deaminase
Probab=99.97 E-value=1.2e-30 Score=265.85 Aligned_cols=309 Identities=16% Similarity=0.197 Sum_probs=213.4
Q ss_pred hhCCcchhccccCCCCCHHHHHHHHHHh-ccCCCCC-------ccchHHHHhh-----------------cCCC---HHH
Q 017943 5 ASMPKVELHAHLNGSIRDSTLLELARVL-GEKGVIV-------FSDVEHVIMK-----------------SDRS---LHE 56 (363)
Q Consensus 5 ~~lPK~eLH~HL~Gsi~~~~l~~la~~~-~~~~~~~-------~~~~~~~~~~-----------------~~~~---l~~ 56 (363)
.+.=|||.|+|+.+|+....|+++.++. .+.+-.. ..++.+++.. ...+ ++.
T Consensus 379 YnvrKVDthvh~sacMnqk~LLrFIk~kl~~epd~vV~~~dGk~~TL~evFe~l~lt~ydLsVD~Ldvha~~~tfhRfDk 458 (835)
T PLN02768 379 YNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDK 458 (835)
T ss_pred eeeeEeeccchhhccCCHHHHHHHHHHHHhcCCCceeeccCCccccHHHHHHHcCCcccCCcccccccCCCccccccccc
Confidence 3466999999999999999999987652 1111000 1122333210 0001 111
Q ss_pred H------------HHhhhHHHhhcCCHHHHHHHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhh
Q 017943 57 V------------FKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVS 124 (363)
Q Consensus 57 f------------~~~f~~~~~~~~~~e~~~~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~ 124 (363)
| .+.|-.+...+. -+-+.++++++++++-....+++|+|++. .|.+.+++ +.+.+=+...
T Consensus 459 Fn~kynP~G~s~LReiFLktDN~i~-GrYfAELiK~V~~dlE~sKyQ~aE~RlsI-----YGr~~~EW-~kLA~W~v~~- 530 (835)
T PLN02768 459 FNLKYNPCGQSRLREIFLKQDNLIQ-GRFLAELTKQVFSDLEASKYQMAEYRISI-----YGRKQSEW-DQLASWIVNN- 530 (835)
T ss_pred cccccCccchHHHHHHHcCcCCCCC-hhhHHHHHHHHHHHHHhccceeeEEEEEe-----cCCCHHHH-HHHHHHHHHc-
Confidence 1 111111112222 34578899999999999999999999994 46666553 2222222110
Q ss_pred hccccccccccccccccccccccccccCCCCCCcEEEEEEEeeCCCCHHH-------HHHHHHHHHh-h-----CC----
Q 017943 125 AVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEA-------AMETVKLALE-M-----RD---- 187 (363)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~~~r~~~~e~-------~~~~~~~a~~-~-----~~---- 187 (363)
.-.--.+||++++.|-.+.-. -.++++.... + .+
T Consensus 531 -----------------------------~l~S~nvRWlIQIPRlY~i~k~~g~v~nFqd~L~NIF~PLFeATl~P~~hp 581 (835)
T PLN02768 531 -----------------------------ELYSENVVWLIQLPRLYNVYKEMGIVTSFQNILDNIFIPLFEVTVDPDSHP 581 (835)
T ss_pred -----------------------------CCCCCCceEEEEcccchhhhhcCCccCCHHHHHHHHHHHHHHHhcCCccCH
Confidence 011125788888888544221 1233332221 0 11
Q ss_pred ------CceEEEecCCCCCC-------------------CChhh-HH-------HHHHH-HHHcC---CceeeecCCCCC
Q 017943 188 ------LGVVGIDLSGNPTK-------------------GEWTT-FL-------PALKF-AREQG---LQITLHCGEIPN 230 (363)
Q Consensus 188 ------~~vvGidl~g~e~~-------------------~~~~~-~~-------~~~~~-A~~~g---l~~~~HagE~~~ 230 (363)
..|+|||.+.+|.. +||-. +. .++.. -++.| +.++.||||.++
T Consensus 582 ~L~~FL~~V~GFDsVdDESk~e~~~~~~~p~P~~W~~~~NPPyaYYlYYmyANi~~LN~lR~~rGlNTf~fRPHAGEag~ 661 (835)
T PLN02768 582 QLHVFLKQVVGLDLVDDESKPERRPTKHMPTPAQWTNVFNPAFSYYVYYCYANLYTLNKLRESKGMTTIKFRPHSGEAGD 661 (835)
T ss_pred HHHHHHHhcCCceeecCCCccccccCcCCCChhhCcCCCCCChhhhHHHHHHHHHHHHHHHHHCCCCccccccccCCCCC
Confidence 14899999876642 11110 00 01112 23444 678999999999
Q ss_pred hhhHHHHHhcCCCeeeEeccc--CHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccC
Q 017943 231 KEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS 308 (363)
Q Consensus 231 ~~~i~~~l~~g~~rigHg~~~--~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~ 308 (363)
++.+++++ ++++|||||+.+ +|.++.++..++|++++||+||. +.+.++..||+++|+++|++|+||||||.+|+
T Consensus 662 ~e~I~~Al-L~AdRIgHGv~l~kdP~LqyL~~l~qIgLevCPlSN~--~l~~~y~~HPf~~f~~~GL~VSLNTDDPL~fh 738 (835)
T PLN02768 662 IDHLAATF-LTCHNIAHGINLRKSPVLQYLYYLAQIGLAMSPLSNN--SLFLDYHRNPFPMFFLRGLNVSLSTDDPLQIH 738 (835)
T ss_pred HHHHHHHH-hcCCccCCccccCcCHHHHHHHHHcCCeEEECCCcch--hhhcchhhChHHHHHHCCCEEEEcCCCccccC
Confidence 99999988 899999999987 57888899999999999999998 46678889999999999999999999999998
Q ss_pred C---ChHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 017943 309 T---SVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEI 353 (363)
Q Consensus 309 ~---~l~~E~~~~~~~~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~ 353 (363)
+ .|.+||..+++.++++..|+.+|++||+.+||+++++|++|+..
T Consensus 739 tT~epL~EEYsvAak~~~LS~~DL~ELarNSV~aSff~~~~K~~wLg~ 786 (835)
T PLN02768 739 LTKEPLVEEYSIAASVWKLSSCDLCEIARNSVYQSGFSHALKSHWIGK 786 (835)
T ss_pred CCCCCHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 6 59999999999999999999999999999999999999999864
No 15
>PTZ00310 AMP deaminase; Provisional
Probab=99.96 E-value=8e-29 Score=264.73 Aligned_cols=309 Identities=17% Similarity=0.245 Sum_probs=216.6
Q ss_pred hhCCcchhccccCCCCCHHHHHHHHHHh-ccCCCCC-------ccchHHHHhh------------cCCCHHHHHHhhhH-
Q 017943 5 ASMPKVELHAHLNGSIRDSTLLELARVL-GEKGVIV-------FSDVEHVIMK------------SDRSLHEVFKLFDL- 63 (363)
Q Consensus 5 ~~lPK~eLH~HL~Gsi~~~~l~~la~~~-~~~~~~~-------~~~~~~~~~~------------~~~~l~~f~~~f~~- 63 (363)
.+.=|||.|+|+.+|+....|+++.++- ...+-.. .-++.+++.. ...-...+|..|+.
T Consensus 842 Yn~rKVDthih~sacm~qk~LL~FIk~kl~~~~d~vV~~~~g~~~TL~evF~~l~~t~~lsvd~L~v~ad~~~f~rfD~f 921 (1453)
T PTZ00310 842 YQAYKVDTHIHMAAGMTARQLLEFVVDKLLESGDDIAFKRGDHIVTLGQLFSKYGITPNLTVDQLNVQADHTLFERFDNF 921 (1453)
T ss_pred eeeeeeccccchhccCCHHHHHHHHHHHHhcCCCcEEEcCCCccccHHHHHHHcCCCcccchhhhccccCcchhhhhhcc
Confidence 3567999999999999999999987651 1111110 1122333210 00001122333322
Q ss_pred -----------HHhhc-CC-----HHHHHHHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhc
Q 017943 64 -----------IHVLT-TD-----HATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAV 126 (363)
Q Consensus 64 -----------~~~~~-~~-----~e~~~~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~ 126 (363)
+..++ .+ =+-|.+++++++.++-++.-+++|.|.+. .|.+.+++ +.+..=+-..
T Consensus 922 n~kynP~g~s~LreiFLktDN~i~G~YfAel~K~v~~~le~skyq~aE~RlSI-----YG~~~~EW-~kLA~W~~~~--- 992 (1453)
T PTZ00310 922 NSKYNPMENPDLRSLLLKTDNFMKGRYFAELIKDVFEQYSRDRFTYAENRLSI-----YGINVKEW-DDLAHWFDTH--- 992 (1453)
T ss_pred cccCCCcccHHHHHHHccCCCCcccHhHHHHHHHHHHHHHhccceeeeeeEee-----eCCCHHHH-HHHHHHHHHc---
Confidence 11221 11 23468899999999999999999999995 46666653 3222211110
Q ss_pred cccccccccccccccccccccccccCCCCCCcEEEEEEEeeCCCCHHHH-------HHHHHHHHh-h-----CC------
Q 017943 127 DVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAA-------METVKLALE-M-----RD------ 187 (363)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~~~r~~~~e~~-------~~~~~~a~~-~-----~~------ 187 (363)
.-..-.+||++++.|-.+.-.. .++++.... + .+
T Consensus 993 ---------------------------~l~S~nvrW~IQiPRlY~~~k~~g~v~~F~~~L~nIF~PLFeat~~P~~hp~L 1045 (1453)
T PTZ00310 993 ---------------------------GMASKHNKWMIQVPRVYKVFRAQNVIGSFGQYLDNIFQPLWEASLHPSKHPKF 1045 (1453)
T ss_pred ---------------------------CCCCCCceEEEecchhhHHHHhcCCcCCHHHHHHHHHHHhHhhhcCcccChHH
Confidence 0111258999999997543221 233332221 1 11
Q ss_pred ----CceEEEecCCCCCCCC-------hhhHH----------------H--HHH-HHHHcC---CceeeecCCCCChhhH
Q 017943 188 ----LGVVGIDLSGNPTKGE-------WTTFL----------------P--ALK-FAREQG---LQITLHCGEIPNKEEI 234 (363)
Q Consensus 188 ----~~vvGidl~g~e~~~~-------~~~~~----------------~--~~~-~A~~~g---l~~~~HagE~~~~~~i 234 (363)
..|+|||.+.+|...+ |..+. . .+. .-++.| +.++.||||.++++++
T Consensus 1046 ~~FL~~v~gfDsVddEsk~e~~~~~~~P~~W~~~~NPpy~Yy~YY~yaNi~~LN~~R~~rglnTf~~rpHAGEag~~~hI 1125 (1453)
T PTZ00310 1046 HYFLNHVSGFDSVDNEATIDLPFTDVSPWAWTSVENPPYNYYLYYLYANIRTLNEFRASRGFSTFALRPHCGESGSMDHL 1125 (1453)
T ss_pred HHHHHHhCcceEEcCCcccccccCCCChhhccCCCCCchhHhHHHHHHHHHHHHHHHHHCCCCCcCccccCCCCCCHHHH
Confidence 1589999988775421 11111 0 111 123445 5799999999999999
Q ss_pred HHHHhcCCCeeeEeccc--CHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCC--
Q 017943 235 QSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTS-- 310 (363)
Q Consensus 235 ~~~l~~g~~rigHg~~~--~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~-- 310 (363)
.+++ +|++|||||+.+ +|.++.++..++|++++||+||.. .+.++..||+++|+++|++|+||||||++|+++
T Consensus 1126 ~~Al-L~a~RIgHGi~l~~dp~L~yl~~l~qI~LevCPlSN~~--l~~sy~~hP~~~f~~~Gl~VSLnTDDPl~f~tT~E 1202 (1453)
T PTZ00310 1126 YGAF-LCANSICHGINLRNDPPMQYLYYLAQIGLHVSPLSNNA--LFLAFLENPFPVFFHRGLNVSLSTDDPLMFHQTQE 1202 (1453)
T ss_pred HHHH-hCCccccchhhhCcCHHHHHHHHHcCCeEEECCCchHh--hhhchhhCcHHHHHHCCCEEEECCCCccccCCCcc
Confidence 9988 899999999987 688999999999999999999974 567788999999999999999999999999987
Q ss_pred -hHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 017943 311 -VSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKE 352 (363)
Q Consensus 311 -l~~E~~~~~~~~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~ 352 (363)
|.+||..+++.+|+|.+|+.++++||+..|..+...|+.|+.
T Consensus 1203 pL~eEYsiaa~~~~LS~~Dl~elarNSV~~SGf~~~~K~~wlG 1245 (1453)
T PTZ00310 1203 PLIEEYSIAARVWGLSLNDLCEIARNSVLQSGFDAAFKRNAIG 1245 (1453)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCCHHHHHHhhc
Confidence 999999999999999999999999999999999999999986
No 16
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=99.95 E-value=2.6e-25 Score=218.17 Aligned_cols=236 Identities=11% Similarity=0.051 Sum_probs=180.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccc
Q 017943 69 TDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMND 148 (363)
Q Consensus 69 ~~~e~~~~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (363)
.++++++..++..++++++.||.|+|++.. .|++.++... ++++++++.
T Consensus 88 ~~~ed~~~~a~~~~~e~l~~Gvt~ve~~~~------~g~~~~~~~~-~~~a~~~~~------------------------ 136 (377)
T TIGR01224 88 ASEEELLKLALFRLKSMLRSGTTTAEVKSG------YGLDLETELK-MLRAAKALH------------------------ 136 (377)
T ss_pred CCHHHHHHHHHHHHHHHHHCCceEEEeccc------CCCCHHHHHH-HHHHHHHHH------------------------
Confidence 478999999999999999999999998743 3566655443 677776642
Q ss_pred cccCCCCCCcEEEEEEEeeCCCCHH------H-HHHHHHHHHhh-CC-CceEEEecCCCCCCCChhhHHHHHHHHHHcCC
Q 017943 149 ACNGTRGKKIYVRLLLSIDRRETTE------A-AMETVKLALEM-RD-LGVVGIDLSGNPTKGEWTTFLPALKFAREQGL 219 (363)
Q Consensus 149 ~~~~~~~~gi~~~li~~~~r~~~~e------~-~~~~~~~a~~~-~~-~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl 219 (363)
.+.|+++.++.+..+..+.+ . ..+..+.+++. .. ..+.|+++.|.+...+++.+..+++.|+++|+
T Consensus 137 -----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~A~~~g~ 211 (377)
T TIGR01224 137 -----EEQPVDVVTTFLGAHAVPPEFQGRPDDYVDGICEELIPQVAEEGLASFADVFCEAGVFSVEQSRRILQAAQEAGL 211 (377)
T ss_pred -----hhCCCceEeeeeecccCCccccCCHHHHHHHHHHHHHHHHHHhCCCCeeEEEecCCCcCHHHHHHHHHHHHHCCC
Confidence 24667777764422222211 1 11222222221 11 24788888887766778999999999999999
Q ss_pred ceeeecCCCCChhhHHHHHhcCCCeeeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEe
Q 017943 220 QITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVL 299 (363)
Q Consensus 220 ~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l 299 (363)
++++|++|......+..+..+|..+++||++++++++++++++|+.+++||+||+.++. ..+|+++++++|+++++
T Consensus 212 ~v~~H~~e~~~~~~~~~~~~~g~~~~~H~~~~~~~~l~~la~~g~~~~~~P~~~~~l~~----~~~p~~~l~~~Gv~v~l 287 (377)
T TIGR01224 212 PVKLHAEELSNLGGAELAAKLGAVSADHLEHASDAGIKALAEAGTVAVLLPGTTFYLRE----TYPPARQLIDYGVPVAL 287 (377)
T ss_pred CEEEEecCCCCCCHHHHHHHcCCCccHHHhcCCHHHHHHHHhcCCEEEECchHHHhcCC----cCccHHHHHHCCCCEEE
Confidence 99999998765555665666888999999999999999999999999999999998872 56899999999999999
Q ss_pred cCCCCC-ccC-CChHHHHHHHHHHCCCCHHHHHH-HHHHHHHHcCCCh
Q 017943 300 CTDDSG-VFS-TSVSREYDLAASAFSLGRREMFQ-LAKSAVKFIFANG 344 (363)
Q Consensus 300 ~TDd~~-~~~-~~l~~E~~~~~~~~~l~~~~l~~-l~~na~~~sf~~~ 344 (363)
|||... .+. .++..++..+....+++..++.+ ++.|+++..++++
T Consensus 288 gTD~~~~~~~~~~~~~~~~~~~~~~~ls~~eal~~~T~~~A~~lg~~~ 335 (377)
T TIGR01224 288 ATDLNPGSSPTLSMQLIMSLACRLMKMTPEEALHAATVNAAYALGLGE 335 (377)
T ss_pred ECCCCCCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 999533 444 57888887777778999999665 6799999998764
No 17
>PTZ00310 AMP deaminase; Provisional
Probab=99.94 E-value=1.3e-25 Score=240.37 Aligned_cols=135 Identities=16% Similarity=0.093 Sum_probs=119.4
Q ss_pred CceeeecCCCCChhhHHHHHhcCCCeeeEeccc--CHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCC
Q 017943 219 LQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP 296 (363)
Q Consensus 219 l~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~--~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~ 296 (363)
+.+..|+||.++.+.+..+. +-++||+||+.+ ++.+..++.+++|++++||+||..+++ .++..||+++|+++|++
T Consensus 480 f~LRPhcgeag~~dhLv~~f-LladRI~HGi~l~d~p~LqyL~~e~qI~LeVCPlSN~~l~v-~sy~~HPi~~fl~~GL~ 557 (1453)
T PTZ00310 480 LQLRPSGEKAPAYDQLISSY-LLGDVITRATSIADYPVLQYLCGLHRVGLTVSPLRDHALSI-TAYFDHPLPKFLHRCLR 557 (1453)
T ss_pred EEecCCCCCCCCHHHHHHHH-HhhccccchhccCchHHHHHHHHHcCCeEEECCCcccccCC-CchhhCcHHHHHHCCCE
Confidence 55788999999877554433 358999999987 345555556999999999999999996 78889999999999999
Q ss_pred EEecCCCCCccCCC---hHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 017943 297 LVLCTDDSGVFSTS---VSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFD 355 (363)
Q Consensus 297 v~l~TDd~~~~~~~---l~~E~~~~~~~~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~ 355 (363)
|+||||||++|+++ |.+||..+++.+|++.+|+.++++||+.+||+++++|++|+..+-
T Consensus 558 VSLNTDDPl~F~tt~EpL~EEY~iaaq~~gLS~~DL~eLarNSV~aSf~~~e~K~~lLg~l~ 619 (1453)
T PTZ00310 558 VSISTSDPLYFHHHSQPLIEEYATAMKLFSLSPLDTTELARNSVLNSSFPPEVKQQWLGERF 619 (1453)
T ss_pred EEECCCCccccCCCCccHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhCCCHHHHHHHHHHhc
Confidence 99999999999975 999999999999999999999999999999999999999998653
No 18
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=99.93 E-value=1.5e-23 Score=205.15 Aligned_cols=234 Identities=12% Similarity=0.082 Sum_probs=176.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccc
Q 017943 69 TDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMND 148 (363)
Q Consensus 69 ~~~e~~~~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (363)
.++++++..+++.+.++++.||.|+|.+.. .+++.+..++ ++++++++++
T Consensus 85 ~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~------~~~~~~~~~~-~~~a~~~~~~----------------------- 134 (371)
T cd01296 85 ASEDELFASALRRLARMLRHGTTTVEVKSG------YGLDLETELK-MLRVIRRLKE----------------------- 134 (371)
T ss_pred CCHHHHHHHHHHHHHHHHHCCceEEEeccc------CCCCHHHHHH-HHHHHHHHHh-----------------------
Confidence 368999999999999999999999998733 3455554444 5677766532
Q ss_pred cccCCCCCCcEEEEEEEee-CCCCHH-------HHHHHHHHHHhh--CCCceEEEecCCCCCCCChhhHHHHHHHHHHcC
Q 017943 149 ACNGTRGKKIYVRLLLSID-RRETTE-------AAMETVKLALEM--RDLGVVGIDLSGNPTKGEWTTFLPALKFAREQG 218 (363)
Q Consensus 149 ~~~~~~~~gi~~~li~~~~-r~~~~e-------~~~~~~~~a~~~--~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~g 218 (363)
+.++ .++.++. |...++ ......+..++. ....+.|+++.|.+...+.+.+..+++.|+++|
T Consensus 135 ------~~~~--~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g 206 (371)
T cd01296 135 ------EGPV--DLVSTFLGAHAVPPEYKGREEYIDLVIEEVLPAVAEENLADFCDVFCEKGAFSLEQSRRILEAAKEAG 206 (371)
T ss_pred ------hCCC--ceEeeeeecccCCcccCChHHHHHHHHHHHHHHHHHhCCCCEEEEeecCCccCHHHHHHHHHHHHHCC
Confidence 1122 2333333 222221 111112222221 124577888887665567889999999999999
Q ss_pred CceeeecCCCCChhhHHHHHhcCCCeeeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEE
Q 017943 219 LQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLV 298 (363)
Q Consensus 219 l~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~ 298 (363)
+++++|++|......+..+..+|..+++||+.+++++++++++.|+.+++||+||..++. ..+|+++++++|++++
T Consensus 207 ~~v~~H~~e~~~~~~~~~~~~~g~~~i~H~~~~~~~~i~~la~~g~~v~~~P~~~~~l~~----~~~~~~~l~~~Gv~v~ 282 (371)
T cd01296 207 LPVKIHADELSNIGGAELAAELGALSADHLEHTSDEGIAALAEAGTVAVLLPGTAFSLRE----TYPPARKLIDAGVPVA 282 (371)
T ss_pred CeEEEEEcCcCCCCHHHHHHHcCCCeeHHhcCCCHHHHHHHHHcCCeEEEChHHHHHhCC----CCCCHHHHHHCCCcEE
Confidence 999999999776555666667899999999999999999999999999999999998763 3689999999999999
Q ss_pred ecCCC-CCccC-CChHHHHHHHHHHCCCCHHHHH-HHHHHHHHHcCCCh
Q 017943 299 LCTDD-SGVFS-TSVSREYDLAASAFSLGRREMF-QLAKSAVKFIFANG 344 (363)
Q Consensus 299 l~TDd-~~~~~-~~l~~E~~~~~~~~~l~~~~l~-~l~~na~~~sf~~~ 344 (363)
+|||+ |..++ .++..++..+....+++.+++. .++.|+++...+++
T Consensus 283 lgsD~~p~~~~~~~l~~~~~~~~~~~~l~~~~al~~aT~~~A~~lg~~~ 331 (371)
T cd01296 283 LGTDFNPGSSPTSSMPLVMHLACRLMRMTPEEALTAATINAAAALGLGE 331 (371)
T ss_pred EecCCCCCCChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 99996 65554 4588899888888899999966 66899999988753
No 19
>PRK06886 hypothetical protein; Validated
Probab=99.91 E-value=2.3e-22 Score=192.89 Aligned_cols=281 Identities=12% Similarity=0.071 Sum_probs=193.7
Q ss_pred hCCcchhccccCCCCCHHHHHHHHHHhccCCCCCccchHHHHhhcCCCHHHHHHhhhHHHhhcCCHHHHHHHHHHHHHHH
Q 017943 6 SMPKVELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDF 85 (363)
Q Consensus 6 ~lPK~eLH~HL~Gsi~~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~f~~~~~~~~~~e~~~~~~~~~~~~~ 85 (363)
.=+.||-|+|||-++.... ..+ + . ....+|.+-++.+...+.-+ |.+|+++.+...++.+
T Consensus 19 ~~gfv~~H~HlDk~~~~~~-~~~------~-~-----------~~~g~l~e~i~~~~~~k~~~-t~~dv~~Ra~~~l~~~ 78 (329)
T PRK06886 19 KGGWVNAHAHADRAFTMTP-EKI------A-I-----------YHYANLQQKWDLVDEVKRNS-TVEDYYARFSQAIELM 78 (329)
T ss_pred hcCCccccccccccccCCC-ccc------c-c-----------cCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 3456999999999887542 000 0 0 02356777777776665555 5789999999999999
Q ss_pred HhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEEE
Q 017943 86 ASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLS 165 (363)
Q Consensus 86 ~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~ 165 (363)
++.|+.|+..+++. ....|+. .++++.+..+++ .+.++. +..++++.|+
T Consensus 79 ~~~Gtt~iRtHvdv--d~~~~l~---~~~a~~~~r~~~----~~~idl---------------q~vafPq~g~------- 127 (329)
T PRK06886 79 ISQGVTAFGTFVDI--DPICEDR---AIIAAHKAREVY----KHDIIL---------------KFANQTLKGV------- 127 (329)
T ss_pred HHcCcccEeeeecc--CCCcccc---HHHHHHHHHHHh----cCcceE---------------EEEecChhhc-------
Confidence 99999999888763 2223443 366666665554 333322 3345666665
Q ss_pred eeCCCCHHHHHHHHHHHHhhCCCceEEEecCCC-CCCCChhhHHHHHHHHHHcCCceeeecCCCCChh--hHH----HHH
Q 017943 166 IDRRETTEAAMETVKLALEMRDLGVVGIDLSGN-PTKGEWTTFLPALKFAREQGLQITLHCGEIPNKE--EIQ----SML 238 (363)
Q Consensus 166 ~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~-e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~--~i~----~~l 238 (363)
.+ ....+.++.+++. .+.+-|+.-... ....+.+.+..+|+.|+++|+++++|++|+.++. .+. ..+
T Consensus 128 -~~----~~~~~l~~~al~~-advvGGiP~~~~~~~~~~~e~l~~~~~lA~~~g~~Id~Hlde~~~~~~~~le~l~~~~~ 201 (329)
T PRK06886 128 -IE----PTAKKWFDIGSEM-VDMIGGLPYRDELDYGRGLEAMDILLDTAKSLGKMVHVHVDQFNTPKEKETEQLCDKTI 201 (329)
T ss_pred -cC----ccHHHHHHHHHHh-CCEEeCccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEEeECCCCchhHHHHHHHHHHHH
Confidence 22 1235677777766 333333522211 1234567899999999999999999999987652 222 223
Q ss_pred hcC---CCeeeEecccCH-------HHHHHHhcCCCcEEEcccccccccccc-----CCCCccHHHHHHcCCCEEecCCC
Q 017943 239 DFL---PQRIGHACCFEE-------EEWRKLKSSKIPVEICLTSNIRTETIS-----SLDIHHFVDLYKAQHPLVLCTDD 303 (363)
Q Consensus 239 ~~g---~~rigHg~~~~~-------~~~~~l~~~~i~ve~cPtSN~~l~~~~-----~~~~~pi~~l~~~Gv~v~l~TDd 303 (363)
+.| ..-++||+.+++ .++++|+++||.|++||+||++++... ..+..|+++|+++||+|++|||+
T Consensus 202 ~~Gl~grV~~sH~~~L~~~~~~~~~~~i~~La~agi~Vv~~P~snl~l~~~~~~~p~~rGv~pv~eL~~aGV~V~lGtDn 281 (329)
T PRK06886 202 EHGMQGRVVAIHGISIGAHSKEYRYRLYQKMREADMMVIACPMAWIDSNRKEDLMPFHNALTPADEMIPEGITVALGTDN 281 (329)
T ss_pred HcCCCCCEEEEEeccccCcChhhHHHHHHHHHHcCCeEEECchhhhhhccccccCcCCCCCCCHHHHHHCCCeEEEecCC
Confidence 433 345799999864 369999999999999999998765432 23568999999999999999999
Q ss_pred CC-----ccCCChHHHHHHHHHHCCC-CHHHHHH-HHHHHHHHcCCC
Q 017943 304 SG-----VFSTSVSREYDLAASAFSL-GRREMFQ-LAKSAVKFIFAN 343 (363)
Q Consensus 304 ~~-----~~~~~l~~E~~~~~~~~~l-~~~~l~~-l~~na~~~sf~~ 343 (363)
.. +.+.||+++++.++...++ +..++.. .+.|++++.-++
T Consensus 282 v~D~~~p~g~~Dmle~~~l~~~~~~~~~~~~~l~maT~~gAraLgl~ 328 (329)
T PRK06886 282 ICDYMVPLCEGDMWQELSLLAAGCRFYDLDEMVNIASINGRKVLGLE 328 (329)
T ss_pred CcccCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHHHhhhHHHHhCCC
Confidence 75 3348999999999887765 4566554 567998876543
No 20
>PRK09230 cytosine deaminase; Provisional
Probab=99.90 E-value=1.3e-22 Score=202.24 Aligned_cols=277 Identities=14% Similarity=0.133 Sum_probs=183.1
Q ss_pred CCc-chhccccCCCCCHHHHHHHHHHhccCCCCCccchHHHHhhcCCCHHHHHHhhhHHHhhcCCHHHHHHHHHHHHHHH
Q 017943 7 MPK-VELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDF 85 (363)
Q Consensus 7 lPK-~eLH~HL~Gsi~~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~f~~~~~~~~~~e~~~~~~~~~~~~~ 85 (363)
||- +|.|+|++.++..... . +. ...++.+.+..+ +......++++++..+...++++
T Consensus 54 ~PGlid~H~H~~~~~~~~~~----~---------~~--------~~~~l~~~i~~~-~~~~~~~t~ed~~~~a~~~~~e~ 111 (426)
T PRK09230 54 IPPFIEPHIHLDTTQTAGEP----N---------WN--------QSGTLFEGIERW-AERKALLTHEDVKQRAWQTLKWQ 111 (426)
T ss_pred ccceeEEEEccccceecCCC----c---------cC--------CCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHH
Confidence 676 9999999886543210 0 00 112344555554 22333457999999999999999
Q ss_pred HhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEEE
Q 017943 86 ASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLS 165 (363)
Q Consensus 86 ~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~ 165 (363)
.+.||.|+|.+++|... + ...+++++++.++++. ..++.++ +
T Consensus 112 l~~GvTtvr~~~d~~~~---~---~~~~~a~~~~~~~~~~-----------------------------~~~~~i~---a 153 (426)
T PRK09230 112 IANGIQHVRTHVDVSDP---T---LTALKAMLEVKEEVAP-----------------------------WVDLQIV---A 153 (426)
T ss_pred HHcCcccEEeccccCCc---c---hhHHHHHHHHHHHhhC-----------------------------cceEEEE---e
Confidence 99999999999987421 1 1356777777766432 1222222 2
Q ss_pred eeCC--CCHHHHHHHHHHHHhhCCCceEE-EecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhh--HHHHH--
Q 017943 166 IDRR--ETTEAAMETVKLALEMRDLGVVG-IDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEE--IQSML-- 238 (363)
Q Consensus 166 ~~r~--~~~e~~~~~~~~a~~~~~~~vvG-idl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~--i~~~l-- 238 (363)
+.+. .+.+...+.++.++++..+ ++| +...+.+...+++.+..+|+.|+++|+++++|++|..++.. ....+
T Consensus 154 ~~~~~~~~~~~~~~~l~~a~~~~~~-~vg~~p~~~~~~~~~~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~~~~~~~~~~ 232 (426)
T PRK09230 154 FPQEGILSYPNGEALLEEALRLGAD-VVGAIPHFEFTREYGVESLHKAFALAQKYDRLIDVHCDEIDDEQSRFVETVAAL 232 (426)
T ss_pred ccCccccCCccHHHHHHHHHHcCCC-EEeCCCCccccchhHHHHHHHHHHHHHHhCCCcEEEECCCCCcchHHHHHHHHH
Confidence 2222 1112345667777776543 333 22222222235788999999999999999999999876533 22222
Q ss_pred --hcC--C-CeeeEeccc-------CHHHHHHHhcCCCcEEEcccccccccccc-----CCCCccHHHHHHcCCCEEecC
Q 017943 239 --DFL--P-QRIGHACCF-------EEEEWRKLKSSKIPVEICLTSNIRTETIS-----SLDIHHFVDLYKAQHPLVLCT 301 (363)
Q Consensus 239 --~~g--~-~rigHg~~~-------~~~~~~~l~~~~i~ve~cPtSN~~l~~~~-----~~~~~pi~~l~~~Gv~v~l~T 301 (363)
..| . --++||+++ +++++++|+++|+.+++||+||++++... ..+..|+++|+++||+|+|||
T Consensus 233 ~~~~gl~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~vv~cP~sn~~l~~~~~~~p~~~g~~pi~~l~~aGv~V~lGT 312 (426)
T PRK09230 233 AHREGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGRFDTYPKRRGITRVKEMLEAGINVCFGH 312 (426)
T ss_pred HHHhCCCCCEEEEecCchhcCCHHHHHHHHHHHHHcCCeEEECcchhhhhcCCCCCCCCCCCCcCHHHHHHCCCeEEEec
Confidence 233 2 347999998 47899999999999999999999986311 124568999999999999999
Q ss_pred CCCCc----cC-CChHHHHHHHHHH---CCC-CHHHH-HHHHHHHHHHcCCCh
Q 017943 302 DDSGV----FS-TSVSREYDLAASA---FSL-GRREM-FQLAKSAVKFIFANG 344 (363)
Q Consensus 302 Dd~~~----~~-~~l~~E~~~~~~~---~~l-~~~~l-~~l~~na~~~sf~~~ 344 (363)
||+.. ++ .+|.+++..+... ++. +..++ ..++.|++++..+++
T Consensus 313 D~~~d~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~maT~~gA~alg~~~ 365 (426)
T PRK09230 313 DDVFDPWYPLGTANMLQVLHMGLHVCQLMGYGQINDGLNLITTHSARTLNLQD 365 (426)
T ss_pred CCCCCCCcCCCCCCHHHHHHHHHHHHhhCChhhHHHHHHHHhcchhHHhCCCC
Confidence 98642 23 7899988876432 222 24554 455789999887653
No 21
>PRK07213 chlorohydrolase; Provisional
Probab=99.88 E-value=5.6e-21 Score=187.63 Aligned_cols=222 Identities=17% Similarity=0.182 Sum_probs=161.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeE-EEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccc
Q 017943 69 TDHATVTRITQEVVEDFASENIVY-LELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMN 147 (363)
Q Consensus 69 ~~~e~~~~~~~~~~~~~~~~gV~y-~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (363)
.++++++..++..+.++.+.||.. .++. ..+.. .++++.++.+
T Consensus 91 ~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~-------~~~~~---~~~~~~~a~~-------------------------- 134 (375)
T PRK07213 91 CSDKELVEGMKEGLYDMYNNGIKAFCDFR-------EGGIK---GINLLKKASS-------------------------- 134 (375)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEhh-------hcChh---HHHHHHHHHH--------------------------
Confidence 478999999999999999999964 3321 01211 1233333322
Q ss_pred ccccCCCCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCC
Q 017943 148 DACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE 227 (363)
Q Consensus 148 ~~~~~~~~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE 227 (363)
..|++..++ +......++...+.++...+. ..|+++.+.. .++++.++.+++.|+++|+++++|++|
T Consensus 135 -------~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~-~~s~~~l~~~~~~A~~~g~~v~~H~~e 201 (375)
T PRK07213 135 -------DLPIKPIIL-GRPTEADENELKKEIREILKN----SDGIGLSGAN-EYSDEELKFICKECKREKKIFSIHAAE 201 (375)
T ss_pred -------cCCCceEEe-cCCCcccchhhHHHHHHHHHh----cccccccccc-cCCHHHHHHHHHHHHHcCCEEEEeeCC
Confidence 234444321 111011223344444433332 3366666543 367899999999999999999999999
Q ss_pred CCChh----------hHHHHHhcCCC--eeeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCC
Q 017943 228 IPNKE----------EIQSMLDFLPQ--RIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQH 295 (363)
Q Consensus 228 ~~~~~----------~i~~~l~~g~~--rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv 295 (363)
+..+. .+..+.++|.. .++||++++++++++|+++|+.+++||+||+.++. +.+|+++|+++||
T Consensus 202 ~~~e~~~~~~~~G~~~v~~~~~~G~~~~~i~H~~~~~~~~i~~la~~g~~v~~~P~sn~~l~~----g~~~v~~l~~~Gv 277 (375)
T PRK07213 202 HKGSVEYSLEKYGMTEIERLINLGFKPDFIVHATHPSNDDLELLKENNIPVVVCPRANASFNV----GLPPLNEMLEKGI 277 (375)
T ss_pred chhHHHHHHHHcCCChHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCcEEECCcchhhhcc----CCccHHHHHHCCC
Confidence 87542 24445566755 89999999999999999999999999999999873 5689999999999
Q ss_pred CEEecCCCCCccCCChHHHHHHHHHHCCCCHHHHHH-HHHHHHHHcCCC
Q 017943 296 PLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQ-LAKSAVKFIFAN 343 (363)
Q Consensus 296 ~v~l~TDd~~~~~~~l~~E~~~~~~~~~l~~~~l~~-l~~na~~~sf~~ 343 (363)
+|+||||+++.++.++++||+.+...+++++.++.+ .+.|+++..-++
T Consensus 278 ~v~lGTD~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~ 326 (375)
T PRK07213 278 LLGIGTDNFMANSPSIFREMEFIYKLYHIEPKEILKMATINGAKILGLI 326 (375)
T ss_pred EEEEeeCCCCCchHhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCC
Confidence 999999997766689999999998888999998665 568999887653
No 22
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=99.88 E-value=7e-21 Score=178.07 Aligned_cols=208 Identities=20% Similarity=0.308 Sum_probs=150.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeE-EEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccc
Q 017943 70 DHATVTRITQEVVEDFASENIVY-LELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMND 148 (363)
Q Consensus 70 ~~e~~~~~~~~~~~~~~~~gV~y-~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (363)
++++++..+...+.++.+.||.. ++. .+ .+. +.++++.++.++
T Consensus 46 ~~~~~~~~a~~~~~e~l~~GtTt~~d~--~~-----~~~---~~~~a~~~a~~~-------------------------- 89 (263)
T cd01305 46 DDRELAEAMRKVLRDMRETGIGAFADF--RE-----GGV---EGIELLRRALGK-------------------------- 89 (263)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEc--cC-----cch---hHHHHHHHHHHh--------------------------
Confidence 68999999999999999999964 332 10 111 235666665544
Q ss_pred cccCCCCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCC
Q 017943 149 ACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEI 228 (363)
Q Consensus 149 ~~~~~~~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~ 228 (363)
.|++++.++. +....+.. +...+ ...+++..+ +...+ ++++++.|+++|+++++|++|.
T Consensus 90 -------~g~r~~~~~~--~~~~~~~~----~~~~~----~~~~~~~~~-~~~~~---l~~~~~~A~~~g~~v~~H~~e~ 148 (263)
T cd01305 90 -------LPVPFEVILG--RPTEPDDP----EILLE----VADGLGLSS-ANDVD---LEDILELLRRRGKLFAIHASET 148 (263)
T ss_pred -------cCCCceEEec--cCCcchHH----HHHHh----hcccccCCC-CCccC---HHHHHHHHHHCCCeeEEecCCC
Confidence 3444333332 22221111 11111 112333332 22222 9999999999999999999998
Q ss_pred CCh---hhHHHHHhcCCCeeeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCC
Q 017943 229 PNK---EEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSG 305 (363)
Q Consensus 229 ~~~---~~i~~~l~~g~~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~ 305 (363)
..+ ..+..++++++++++||++++++++++|+++|+.+++||+||..++. +.+|+++|+++||+|++|||++.
T Consensus 149 ~~~~g~~~i~~~~~~~~~~i~H~~~l~~~~~~~la~~g~~v~~~P~sn~~l~~----g~~p~~~l~~~Gv~v~lGtD~~~ 224 (263)
T cd01305 149 RESVGMTDIERALDLEPDLLVHGTHLTDEDLELVRENGVPVVLCPRSNLYFGV----GIPPVAELLKLGIKVLLGTDNVM 224 (263)
T ss_pred CCCCCchhHHHHHhCCCCEEEEcCCCCHHHHHHHHHcCCcEEEChhhHHHhCC----CCCCHHHHHHCCCcEEEECCCCc
Confidence 652 34666677799999999999999999999999999999999998763 56899999999999999999987
Q ss_pred ccCCChHHHHHHHHHHCCC----CHHHHHH-HHHHHHH
Q 017943 306 VFSTSVSREYDLAASAFSL----GRREMFQ-LAKSAVK 338 (363)
Q Consensus 306 ~~~~~l~~E~~~~~~~~~l----~~~~l~~-l~~na~~ 338 (363)
.++.++++||+.++...++ +..++.+ .+.||++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~ 262 (263)
T cd01305 225 VNEPDMWAEMEFLAKYSRLQGYLSPLEILRMATVNAAE 262 (263)
T ss_pred cCCCCHHHHHHHHHHHhcccccCCHHHHHHHHhhcccc
Confidence 7778999999999987776 8888554 5577653
No 23
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=99.86 E-value=1.1e-19 Score=181.20 Aligned_cols=262 Identities=14% Similarity=0.101 Sum_probs=177.1
Q ss_pred CCc-chhccccCCCCCHHHHHHHHHHhccCCCCCccchHHHHhhcCCCHHHHHHhhhHHHhhcCCHHHHHHHHHHHHHHH
Q 017943 7 MPK-VELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDF 85 (363)
Q Consensus 7 lPK-~eLH~HL~Gsi~~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~f~~~~~~~~~~e~~~~~~~~~~~~~ 85 (363)
+|- +|+|+|++.+.-.. .. ...++.+|+..+.+......++++++..++..+.++
T Consensus 53 ~Pg~vd~H~H~~~~~~rg-------------~~-----------~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~e~ 108 (424)
T PRK08393 53 SPGFINAHTHSPMVLLRG-------------LA-----------DDVPLMEWLQNYIWPRERKLKRKDIYWGAYLGLLEM 108 (424)
T ss_pred ccCeeeeccCcchHhhhh-------------cc-----------CCCCHHHHHHhhhccccccCCHHHHHHHHHHHHHHH
Confidence 565 99999998663111 00 123677777766544333446889999999999999
Q ss_pred HhcCC-eEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEE
Q 017943 86 ASENI-VYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLL 164 (363)
Q Consensus 86 ~~~gV-~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~ 164 (363)
.+.|| .++|..+.| +++.++.. +.|++..+.+
T Consensus 109 l~~GvTtv~d~~~~~--------------~~~~~a~~---------------------------------~~G~r~~~~~ 141 (424)
T PRK08393 109 IKSGTTTFVDMYFHM--------------EEVAKATL---------------------------------EVGLRGYLSY 141 (424)
T ss_pred HhcCceEEeccccCH--------------HHHHHHHH---------------------------------HhCCeEEEec
Confidence 99999 677775431 23333332 2355555554
Q ss_pred EeeCCCCHHHHHHHHHHHHhh----C--CCceEEEecC-CCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhh----
Q 017943 165 SIDRRETTEAAMETVKLALEM----R--DLGVVGIDLS-GNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEE---- 233 (363)
Q Consensus 165 ~~~r~~~~e~~~~~~~~a~~~----~--~~~vvGidl~-g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~---- 233 (363)
++.+..+++...+.++.+.++ . ..+.+...++ ..+..++++.++.+++.|+++|+++++|++|...+..
T Consensus 142 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~ 221 (424)
T PRK08393 142 GMVDLGDEEKREKEIKETEKLMEFIEKLNSPRVHFVFGPHAPYTCSLALLKWVREKAREWNKLITIHLSETMDEIKQIRE 221 (424)
T ss_pred eEecCCCccchHHHHHHHHHHHHHHhcCCCCceEEEEeCCcCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHH
Confidence 444333332222333322221 1 1222333332 2355578899999999999999999999999764311
Q ss_pred ------HHHHHhc---CCC-eeeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCC
Q 017943 234 ------IQSMLDF---LPQ-RIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDD 303 (363)
Q Consensus 234 ------i~~~l~~---g~~-rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd 303 (363)
+..+.++ +++ .++||++++++++++|+++|+.+++||.||..++. +..|+++++++|++|++|||+
T Consensus 222 ~~g~~~~~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~g~~v~~~P~sn~~lg~----g~~~~~~~~~~Gv~v~lGtD~ 297 (424)
T PRK08393 222 KYGKSPVVLLDEIGFLNEDVIAAHGVWLSSRDIRILASAGVTVAHNPASNMKLGS----GVMPLRKLLNAGVNVALGTDG 297 (424)
T ss_pred HhCcCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHhcCCEEEECHHHHHhhcc----CCCCHHHHHHCCCcEEEecCC
Confidence 1112223 444 48999999999999999999999999999999873 568999999999999999999
Q ss_pred CCccC-CChHHHHHHHHHH---CC-----CCHHH-HHHHHHHHHHHcCCC
Q 017943 304 SGVFS-TSVSREYDLAASA---FS-----LGRRE-MFQLAKSAVKFIFAN 343 (363)
Q Consensus 304 ~~~~~-~~l~~E~~~~~~~---~~-----l~~~~-l~~l~~na~~~sf~~ 343 (363)
+..++ .++.+|++.+... .+ ++..+ ++.++.|+.+...++
T Consensus 298 ~~~~~~~d~~~~~~~a~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lg~~ 347 (424)
T PRK08393 298 AASNNNLDMLREMKLAALLHKVHNLDPTIADAETVFRMATQNGAKALGLK 347 (424)
T ss_pred CccCCchhHHHHHHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHHHhCCC
Confidence 87665 6999999976522 12 34556 566789999887754
No 24
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.84 E-value=2e-18 Score=169.75 Aligned_cols=259 Identities=13% Similarity=0.055 Sum_probs=174.7
Q ss_pred CCc-chhccccCCCCCHHHHHHHHHHhccCCCCCccchHHHHhhcCCCHHHHHHhhhHHHhhcCCHHHHHHHHHHHHHHH
Q 017943 7 MPK-VELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDF 85 (363)
Q Consensus 7 lPK-~eLH~HL~Gsi~~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~f~~~~~~~~~~e~~~~~~~~~~~~~ 85 (363)
||- |+.|+|+..+.-... + ....+.+++..+......+ ++++.+..++..+.++
T Consensus 30 ~PGlVnaH~H~~~~~~rg~----~--------------------~~~~~~~wl~~~~~~~~~~-~~e~~~~~a~~~~~E~ 84 (381)
T cd01312 30 LPGLINAHTHLEFSANVAQ----F--------------------TYGRFRAWLLSVINSRDEL-LKQPWEEAIRQGIRQM 84 (381)
T ss_pred ecCccccccccchhccccc----c--------------------CCCchHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHH
Confidence 676 999999876633210 0 0123445554433333333 6789999999999999
Q ss_pred HhcCCe-EEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEE
Q 017943 86 ASENIV-YLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLL 164 (363)
Q Consensus 86 ~~~gV~-y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~ 164 (363)
++.||. ..++... . + +.++++ +.|+++.+..
T Consensus 85 l~~G~Tt~~d~~~~----------~----~-~~~a~~---------------------------------~~GiR~~~~~ 116 (381)
T cd01312 85 LESGTTSIGAISSD----------G----S-LLPALA---------------------------------SSGLRGVFFN 116 (381)
T ss_pred HHhCCeEEEEecCC----------H----H-HHHHHH---------------------------------HcCCcEEEEE
Confidence 999994 5543211 1 1 233332 3677777766
Q ss_pred EeeCCCCH---HHHHHHHHHHHhhC--CCceEEEecC-CCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhh-H---
Q 017943 165 SIDRRETT---EAAMETVKLALEMR--DLGVVGIDLS-GNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEE-I--- 234 (363)
Q Consensus 165 ~~~r~~~~---e~~~~~~~~a~~~~--~~~vvGidl~-g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~-i--- 234 (363)
.+....+. +...+.++...++. .++.+.+.++ ..+...+++.++.+++.|+++|+++++|++|+..+.. +
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~a~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~ 196 (381)
T cd01312 117 EVIGSNPSAIDFKGETFLERFKRSKSFESQLFIPAISPHAPYSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEES 196 (381)
T ss_pred eeECCCCchhhhhHHHHHHHHHHhhccCccceEEEECCCCCcccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHh
Confidence 55422211 11222333333321 1222333333 2456678899999999999999999999999753311 0
Q ss_pred -----------------------HHHHh-c---CC-CeeeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCCcc
Q 017943 235 -----------------------QSMLD-F---LP-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHH 286 (363)
Q Consensus 235 -----------------------~~~l~-~---g~-~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~p 286 (363)
.+.++ + ++ ..++||++++++++++|+++|+.+++||+||..++. +..|
T Consensus 197 ~g~~~~~~~~~~~~~~~~~g~~pv~~l~~~g~L~~~~~~~H~~~l~~~~~~~l~~~g~~v~~~P~sn~~lg~----g~~p 272 (381)
T cd01312 197 KGWFKHFWESFLKLPKPKKLATAIDFLDMLGGLGTRVSFVHCVYANLEEAEILASRGASIALCPRSNRLLNG----GKLD 272 (381)
T ss_pred ccchhhHhhhhcccccccCCCCHHHHHHHcCCCCCCcEEEECCcCCHHHHHHHHHcCCeEEECcchhhhhcC----CCcC
Confidence 01222 2 33 458999999999999999999999999999998874 4589
Q ss_pred HHHHHHcCCCEEecCCCCCccC-CChHHHHHHHHHHCC-----CCHHH-HHHHHHHHHHHcCC
Q 017943 287 FVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASAFS-----LGRRE-MFQLAKSAVKFIFA 342 (363)
Q Consensus 287 i~~l~~~Gv~v~l~TDd~~~~~-~~l~~E~~~~~~~~~-----l~~~~-l~~l~~na~~~sf~ 342 (363)
+++|+++|++|+||||+++.++ .+|++||+.+..... ++..+ +...+.|++++..+
T Consensus 273 ~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg~ 335 (381)
T cd01312 273 VSELKKAGIPVSLGTDGLSSNISLSLLDELRALLDLHPEEDLLELASELLLMATLGGARALGL 335 (381)
T ss_pred HHHHHHCCCcEEEeCCCCccCCCCCHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999987766 699999999987543 45666 55667899988765
No 25
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=99.83 E-value=9.8e-19 Score=175.27 Aligned_cols=241 Identities=13% Similarity=0.066 Sum_probs=160.1
Q ss_pred CCHHHHHHhhhHHHhhcCCHHHHHHHHHHHHHHHHhcCC-eEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccc
Q 017943 52 RSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENI-VYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDF 130 (363)
Q Consensus 52 ~~l~~f~~~f~~~~~~~~~~e~~~~~~~~~~~~~~~~gV-~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~ 130 (363)
.++.+++....+...-.-++++++..++..+.++++.|| ..++..++|... .+ ..+++.++.++
T Consensus 83 ~~~~~~l~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~--~~-----~~~~~~~a~~~-------- 147 (441)
T TIGR03314 83 PDFISILKNLWWRLDRALTLEDVYYSGLICSLDAIKSGCTTVIDHHASPNAI--TG-----SLSTIRKAADE-------- 147 (441)
T ss_pred CCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHcCCeEEEecccccccc--cc-----hHHHHHHHHHH--------
Confidence 356666654333322334688999999988999999999 466665544321 11 24555555443
Q ss_pred cccccccccccccccccccccCCCCCCcEEEEEEEeeCCCCHHHHH----HHHHHHHhhCC--CceE--EEecCCCCCCC
Q 017943 131 ASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTEAAM----ETVKLALEMRD--LGVV--GIDLSGNPTKG 202 (363)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~~~r~~~~e~~~----~~~~~a~~~~~--~~vv--Gidl~g~e~~~ 202 (363)
.|+++.+...+....+++... +..+...++.. .+.+ ++... .+..+
T Consensus 148 -------------------------~GiR~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~p~-~~~t~ 201 (441)
T TIGR03314 148 -------------------------AGLRTMLCYETSDRDGGKEMQEGVEENIAFIKKSSGKEPYLVEAHIGAH-APFTV 201 (441)
T ss_pred -------------------------hCCeEEEeeeeecCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecC-CCCCC
Confidence 577776665544322111122 22222223322 2223 34433 35567
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCChhh-H--------HHHH-hc---CC-CeeeEecccCHHHHHHHhcCCCcEEE
Q 017943 203 EWTTFLPALKFAREQGLQITLHCGEIPNKEE-I--------QSML-DF---LP-QRIGHACCFEEEEWRKLKSSKIPVEI 268 (363)
Q Consensus 203 ~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~-i--------~~~l-~~---g~-~rigHg~~~~~~~~~~l~~~~i~ve~ 268 (363)
+++.++.+.+.|+++|+++++|++|+..+.. . .+.+ ++ |+ .-++||++++++++++|+++|+.+++
T Consensus 202 s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~~~g~~~~~~l~~~G~l~~~~~~~H~~~~~~~d~~~la~~g~~v~~ 281 (441)
T TIGR03314 202 SDAGLEMCREAVQATGRGFHIHVAEDIYDVEDSHHKYGKDIVERLADFGLLGSKTLAAHCIYLSDREIELLNETDTFVVH 281 (441)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHcCCCHHHHHHHCCCCCCCeEEEEEecCCHHHHHHHHHcCCcEEE
Confidence 8899999999999999999999999763311 1 1222 23 33 33799999999999999999999999
Q ss_pred ccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCChHHHHHHHHHHCCC-------CHHH-HHHHHHHHHHHc
Q 017943 269 CLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSL-------GRRE-MFQLAKSAVKFI 340 (363)
Q Consensus 269 cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~~~l-------~~~~-l~~l~~na~~~s 340 (363)
||+||+.++. +..|+++|+++||+|+||||+. ..||++||+.++..... ...+ +...+.||.++.
T Consensus 282 cP~sn~~l~~----G~~p~~~~~~~Gv~v~LGtD~~---~~d~~~em~~a~~~~~~~~~~~~~~~~~~~~~aT~~ga~al 354 (441)
T TIGR03314 282 NPESNMGNAV----GYNPVLRMFKNGILLGLGTDGY---TSDMFESLKFANFKHKDAGGDLNAAWPESPAMLFENNNEIA 354 (441)
T ss_pred CHHHHhhhcc----CCCCHHHHHHCCCEEEEcCCCC---CcCHHHHHHHHHHHhccccCCCCccHHHHHHHHHHHHHHHH
Confidence 9999999873 5689999999999999999974 36999999998764321 2344 445567877765
No 26
>PRK06687 chlorohydrolase; Validated
Probab=99.83 E-value=1.3e-18 Score=173.21 Aligned_cols=268 Identities=17% Similarity=0.187 Sum_probs=172.3
Q ss_pred CCc-chhccccCCCCCHHHHHHHHHHhccCCCCCccchHHHHhhcCCCHHHHHHhhhHHHhhcCCHHHHHHHHHHHHHHH
Q 017943 7 MPK-VELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDF 85 (363)
Q Consensus 7 lPK-~eLH~HL~Gsi~~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~f~~~~~~~~~~e~~~~~~~~~~~~~ 85 (363)
||- |+.|+|+.-+.-... . ...++.+++..+.+...-..++++.+..++..+.++
T Consensus 57 ~PGlIn~H~H~~~~~~rg~----~--------------------~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~ 112 (419)
T PRK06687 57 MPGLVNCHTHSAMTGLRGI----R--------------------DDSNLHEWLNDYIWPAESEFTPDMTTNAVKEALTEM 112 (419)
T ss_pred ccceeeeccCCCccccccc----c--------------------CCCCHHHHHHhhhccccccCCHHHHHHHHHHHHHHH
Confidence 676 999999877654321 0 011334444433221111235788889999999999
Q ss_pred HhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEEE
Q 017943 86 ASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLS 165 (363)
Q Consensus 86 ~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~ 165 (363)
.+.||.-+--..++ .+.. .+++.++.++ .|+++.+...
T Consensus 113 l~~GvTTv~d~~~~-----~~~~----~~~~~~a~~~---------------------------------~Gir~~~~~~ 150 (419)
T PRK06687 113 LQSGTTTFNDMYNP-----NGVD----IQQIYQVVKT---------------------------------SKMRCYFSPT 150 (419)
T ss_pred HhcCcceeehhhcc-----cccc----HHHHHHHHHH---------------------------------hCCceEeccc
Confidence 99999765433332 1222 2333444433 3444444332
Q ss_pred eeCC--CCHHHHH-HHHHHHHhhCC--CceEEEecCC-CCCCCChhhHHHHHHHHHHcCCceeeecCCCCChh-hHH---
Q 017943 166 IDRR--ETTEAAM-ETVKLALEMRD--LGVVGIDLSG-NPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKE-EIQ--- 235 (363)
Q Consensus 166 ~~r~--~~~e~~~-~~~~~a~~~~~--~~vvGidl~g-~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~-~i~--- 235 (363)
+... .+.+... +..+...++.. ...+.+.++. .+..++++.+..+++.|+++|+++++|++|..... .+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~ 230 (419)
T PRK06687 151 LFSSETETTAETISRTRSIIDEILKYKNPNFKVMVAPHSPYSCSRDLLEASLEMAKELNIPLHVHVAETKEESGIILKRY 230 (419)
T ss_pred cccCCcccHHHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHH
Confidence 2211 1122211 22222222221 1223333332 35567889999999999999999999999986331 111
Q ss_pred -----HHH-hcC---C-CeeeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCC
Q 017943 236 -----SML-DFL---P-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSG 305 (363)
Q Consensus 236 -----~~l-~~g---~-~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~ 305 (363)
+.+ ++| + ..++||++++++++++|+++|+.+.+||+||..++. +..|+++|+++|++|+||||+++
T Consensus 231 g~~~~~~l~~~g~l~~~~~~~H~~~~~~~~~~~la~~g~~v~~~P~sn~~l~~----g~~p~~~~~~~Gv~v~lGtD~~~ 306 (419)
T PRK06687 231 GKRPLAFLEELGYLDHPSVFAHGVELNEREIERLASSQVAIAHNPISNLKLAS----GIAPIIQLQKAGVAVGIATDSVA 306 (419)
T ss_pred CcCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeEEECcHHhhhhcc----CCCcHHHHHHCCCeEEEeCCCCC
Confidence 112 233 3 458999999999999999999999999999998873 56899999999999999999976
Q ss_pred ccC-CChHHHHHHHHHHC--------CCCHHHHHH-HHHHHHHHcCCCh
Q 017943 306 VFS-TSVSREYDLAASAF--------SLGRREMFQ-LAKSAVKFIFANG 344 (363)
Q Consensus 306 ~~~-~~l~~E~~~~~~~~--------~l~~~~l~~-l~~na~~~sf~~~ 344 (363)
.++ .++++|++.++... .++..++.+ ++.|++++..+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~~ 355 (419)
T PRK06687 307 SNNNLDMFEEGRTAALLQKMKSGDASQFPIETALKVLTIEGAKALGMEN 355 (419)
T ss_pred CCCChhHHHHHHHHHHHhccccCCCccCCHHHHHHHHhHHHHHHcCCCC
Confidence 665 79999999875432 378888554 5689999887654
No 27
>PRK09356 imidazolonepropionase; Validated
Probab=99.82 E-value=8.6e-18 Score=166.59 Aligned_cols=237 Identities=12% Similarity=0.079 Sum_probs=160.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccc
Q 017943 69 TDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMND 148 (363)
Q Consensus 69 ~~~e~~~~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (363)
.++++++..+...+.++.+.||.+++.+.. .+++.+.... .+++++++..
T Consensus 113 ~~~e~~~~~a~~~~~~~l~~GvTtv~~~~~------~~~~~~~~~~-~~~~~~~~~~----------------------- 162 (406)
T PRK09356 113 ASEEELFAQALPRLDALLAEGVTTVEIKSG------YGLDLETELK-MLRVARRLGE----------------------- 162 (406)
T ss_pred CCHHHHHHHHHHHHHHHHhcCceEEEeecc------CCCCHHHHHH-HHHHHHHHhh-----------------------
Confidence 468899999999999999999999986643 2344333222 3445544321
Q ss_pred cccCCCCCCcEEEEEEEeeCCCC------HHH-HHHHHHHHHhh--CCCceEEEecCCCCCCCChhhHHHHHHHHHHcCC
Q 017943 149 ACNGTRGKKIYVRLLLSIDRRET------TEA-AMETVKLALEM--RDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL 219 (363)
Q Consensus 149 ~~~~~~~~gi~~~li~~~~r~~~------~e~-~~~~~~~a~~~--~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl 219 (363)
+.++++.......+.++ .+. .....+..++. ....+.+++..+.+...+++.+..+++.|+++|+
T Consensus 163 ------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~A~~~g~ 236 (406)
T PRK09356 163 ------EHPVDVVTTFLGAHAVPPEYKGRPDAYIDLVCEEMLPAVAEEGLADAVDVFCETGAFSVEQSERVLEAAKALGL 236 (406)
T ss_pred ------hCCCceEeeeeecccCCccccCCHHHHHHHHHHHHhHHHHhcCCcceEEEEecCCCCCHHHHHHHHHHHHHCCC
Confidence 22333222111111111 111 11111211211 1123455554444455678999999999999999
Q ss_pred ceeeecCCCCChhhHHHHHhcCCCeeeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEe
Q 017943 220 QITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVL 299 (363)
Q Consensus 220 ~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l 299 (363)
++++|+.|......+..+.++|..++.|++.+++++++++++.|+.+++||.+|..++. ...+|+++|+++|+++++
T Consensus 237 ~v~~H~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~la~~g~~~~~~P~~~~~l~~---~~~~~~~~l~~~Gi~v~l 313 (406)
T PRK09356 237 PVKIHAEQLSNLGGAELAAEYGALSADHLEYLDEAGIAAMAEAGTVAVLLPGAFYFLRE---TQYPPARLLRDAGVPVAL 313 (406)
T ss_pred CEEEEEecccCCCHHHHHHHcCCcEehHhhcCCHHHHHHHHHhCCEEEECccchhhcCc---ccCchHHHHHHCCCeEEE
Confidence 99999998654444555556788899999999999999999999999999999987753 145899999999999999
Q ss_pred cCCCCC-ccC-CChHHHHHHHHHHCCCCHHHH-HHHHHHHHHHcCCCh
Q 017943 300 CTDDSG-VFS-TSVSREYDLAASAFSLGRREM-FQLAKSAVKFIFANG 344 (363)
Q Consensus 300 ~TDd~~-~~~-~~l~~E~~~~~~~~~l~~~~l-~~l~~na~~~sf~~~ 344 (363)
|||++. ... .++..++..+....+++..++ ...+.|+++...+++
T Consensus 314 gtD~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~T~~~A~~~g~~~ 361 (406)
T PRK09356 314 ATDFNPGSSPTESLLLAMNMACTLFRLTPEEALAAVTINAARALGRQD 361 (406)
T ss_pred eCCCCCCCChhHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 999743 332 456666655555679999985 566799999988754
No 28
>PRK09228 guanine deaminase; Provisional
Probab=99.82 E-value=8.1e-18 Score=168.27 Aligned_cols=267 Identities=16% Similarity=0.166 Sum_probs=176.0
Q ss_pred CCc-chhccccCCCCCHHHHHHHHHHhccCCCCCccchHHHHhhcCCCHHHHHHhhhHH-HhhcCCHHHHHHHHHHHHHH
Q 017943 7 MPK-VELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLI-HVLTTDHATVTRITQEVVED 84 (363)
Q Consensus 7 lPK-~eLH~HL~Gsi~~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~f~~~-~~~~~~~e~~~~~~~~~~~~ 84 (363)
||- |+.|.|+..+.-.. . ...++.+++..+.+. ...+.++++.+..+...+.+
T Consensus 69 ~PGlVn~H~H~~~~~~~g-------------~------------~~~~l~~wl~~~~~~~e~~~~~~~~~~~~a~~~~~e 123 (433)
T PRK09228 69 LPGFIDTHIHYPQTDMIA-------------S------------YGEQLLDWLNTYTFPEERRFADPAYAREVAEFFLDE 123 (433)
T ss_pred ecceecccccccchhhcc-------------C------------CchHHHHHHHhhhhHHHHHhCCHHHHHHHHHHHHHH
Confidence 676 99999998773211 0 001344455443222 22234788889999999999
Q ss_pred HHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEE
Q 017943 85 FASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLL 164 (363)
Q Consensus 85 ~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~ 164 (363)
+.+.||..+=-..+ ..+ ...+++.++.+ +.|+++.+..
T Consensus 124 ~l~~G~Ttv~d~~~--------~~~-~~~~~~~~a~~---------------------------------~~GiR~~~~~ 161 (433)
T PRK09228 124 LLRNGTTTALVFGT--------VHP-QSVDALFEAAE---------------------------------ARNMRMIAGK 161 (433)
T ss_pred HHhCCceEEEeccc--------cCH-HHHHHHHHHHH---------------------------------HcCCeEEeee
Confidence 99999976621111 111 12455555443 2566665544
Q ss_pred EeeCC-C------CHHHHH-HHHHHHHhhCCCceEEEecCC-CCCCCChhhHHHHHHHHHHc-CCceeeecCCCCChh-h
Q 017943 165 SIDRR-E------TTEAAM-ETVKLALEMRDLGVVGIDLSG-NPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNKE-E 233 (363)
Q Consensus 165 ~~~r~-~------~~e~~~-~~~~~a~~~~~~~vvGidl~g-~e~~~~~~~~~~~~~~A~~~-gl~~~~HagE~~~~~-~ 233 (363)
.+... . ..+... +..+...++..++.+++.++. .+..++++.++.+++.|+++ |+++++|++|+..+. .
T Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~ 241 (433)
T PRK09228 162 VLMDRNAPDGLRDTAESGYDDSKALIERWHGKGRLLYAITPRFAPTSTPEQLEAAGALAREHPDVWIQTHLSENLDEIAW 241 (433)
T ss_pred eeecCCCCcccccCHHHHHHHHHHHHHHHhCCCCceEEEECCcCCcCCHHHHHHHHHHHHHCCCCceEEeecCChhHHHH
Confidence 43311 1 122222 222333333333334444332 24456789999999999998 999999999987542 1
Q ss_pred HH----------HHH-hcC---C-CeeeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEE
Q 017943 234 IQ----------SML-DFL---P-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLV 298 (363)
Q Consensus 234 i~----------~~l-~~g---~-~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~ 298 (363)
+. +.+ ++| + ..++||++++++++++|+++|+.+.+||+||+.++. +..|+++++++|++++
T Consensus 242 ~~~~~g~~~~~~~~l~~~G~l~~~~~~~H~~~l~~~~~~~la~~g~~v~~~P~sn~~lg~----g~~~~~~~~~~Gv~v~ 317 (433)
T PRK09228 242 VKELFPEARDYLDVYERYGLLGPRAVFAHCIHLEDRERRRLAETGAAIAFCPTSNLFLGS----GLFDLKRADAAGVRVG 317 (433)
T ss_pred HHHHcCCCCCHHHHHHHcCCCCCCeEEEeccCCCHHHHHHHHHcCCeEEECCccHHhhcC----CCcCHHHHHHCCCeEE
Confidence 11 112 233 3 357999999999999999999999999999998873 5689999999999999
Q ss_pred ecCCCCCccCCChHHHHHHHHHH-----CCCCHHHHH-HHHHHHHHHcCCCh
Q 017943 299 LCTDDSGVFSTSVSREYDLAASA-----FSLGRREMF-QLAKSAVKFIFANG 344 (363)
Q Consensus 299 l~TDd~~~~~~~l~~E~~~~~~~-----~~l~~~~l~-~l~~na~~~sf~~~ 344 (363)
||||.+.....++.++|+.+... .+++.+++. ..+.|+.+...+++
T Consensus 318 lGtD~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~~A~~lg~~~ 369 (433)
T PRK09228 318 LGTDVGGGTSFSMLQTMNEAYKVQQLQGYRLSPFQAFYLATLGGARALGLDD 369 (433)
T ss_pred EecCCCCCCCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHhHHHHHHhCCCC
Confidence 99998764557999999887653 467888855 45689999888753
No 29
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=99.82 E-value=4.7e-18 Score=170.08 Aligned_cols=227 Identities=14% Similarity=0.146 Sum_probs=154.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCe-EEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccc
Q 017943 70 DHATVTRITQEVVEDFASENIV-YLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMND 148 (363)
Q Consensus 70 ~~e~~~~~~~~~~~~~~~~gV~-y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (363)
++++.+..++..+.++.+.||. .+++... .+... +++.++.++
T Consensus 98 ~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~------~~~~~----~~~~~a~~~-------------------------- 141 (435)
T PRK15493 98 TPELAVASTELGLLEMVKSGTTSFSDMFNP------IGVDQ----DAIMETVSR-------------------------- 141 (435)
T ss_pred CHHHHHHHHHHHHHHHHhCCccEEEccccc------cccCH----HHHHHHHHH--------------------------
Confidence 5889999999999999999994 5554321 12222 233444432
Q ss_pred cccCCCCCCcEEEEEEEeeCCC---CHHHH-HHHHHHHHhhCC-CceEEEecC-CCCCCCChhhHHHHHHHHHHcCCcee
Q 017943 149 ACNGTRGKKIYVRLLLSIDRRE---TTEAA-METVKLALEMRD-LGVVGIDLS-GNPTKGEWTTFLPALKFAREQGLQIT 222 (363)
Q Consensus 149 ~~~~~~~~gi~~~li~~~~r~~---~~e~~-~~~~~~a~~~~~-~~vvGidl~-g~e~~~~~~~~~~~~~~A~~~gl~~~ 222 (363)
.|+++.+...+.... +.+.. .+..+...++.. ...+.+.++ ..+..++++.++.+++.|+++|++++
T Consensus 142 -------~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~t~s~e~l~~~~~~A~~~g~~v~ 214 (435)
T PRK15493 142 -------SGMRAAVSRTLFSFGTKEDEKKAIEEAEKYVKRYYNESGMLTTMVAPHSPYTCSTELLEECARIAVENQTMVH 214 (435)
T ss_pred -------cCCcEEEeeeecCCCCCccHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCcCCHHHHHHHHHHHHHcCCcEE
Confidence 466654443322211 11221 122222233322 122333333 24566788999999999999999999
Q ss_pred eecCCCCChh-h---------HHHHHhcC---C-CeeeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCCccHH
Q 017943 223 LHCGEIPNKE-E---------IQSMLDFL---P-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFV 288 (363)
Q Consensus 223 ~HagE~~~~~-~---------i~~~l~~g---~-~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~ 288 (363)
+|++|+.... . +....++| + ..+.||++++++++++|+++|+.+++||.||+.++. +..|++
T Consensus 215 ~H~~e~~~e~~~~~~~~g~~~~~~l~~~Gll~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~l~~----g~~p~~ 290 (435)
T PRK15493 215 IHLSETEREVRDIEAQYGKRPVEYAASCGLFKRPTVIAHGVVLNDNERAFLAEHDVRVAHNPNSNLKLGS----GIANVK 290 (435)
T ss_pred EEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCcEEEEeecCCHHHHHHHHHcCCeEEEChHHHHHHhc----CcccHH
Confidence 9999975321 1 11111233 2 358999999999999999999999999999998873 568999
Q ss_pred HHHHcCCCEEecCCCCCccC-CChHHHHHHHHHH--------CCCCHHHHHH-HHHHHHHHcCCC
Q 017943 289 DLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASA--------FSLGRREMFQ-LAKSAVKFIFAN 343 (363)
Q Consensus 289 ~l~~~Gv~v~l~TDd~~~~~-~~l~~E~~~~~~~--------~~l~~~~l~~-l~~na~~~sf~~ 343 (363)
+|+++|++|+||||++..++ .+|++|++.+... ..++.+++.+ ++.|+++...++
T Consensus 291 ~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~ 355 (435)
T PRK15493 291 AMLEAGIKVGIATDSVASNNNLDMFEEMRIATLLQKGIHQDATALPVETALTLATKGAAEVIGMK 355 (435)
T ss_pred HHHHCCCeEEEccCccccCCCcCHHHHHHHHHHHHhhccCCCCcCCHHHHHHHHhHHHHHHcCCC
Confidence 99999999999999876655 7999999976542 2578888655 468899887764
No 30
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=99.82 E-value=3.8e-18 Score=171.09 Aligned_cols=226 Identities=15% Similarity=0.115 Sum_probs=150.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEE-EEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccc
Q 017943 69 TDHATVTRITQEVVEDFASENIVYL-ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMN 147 (363)
Q Consensus 69 ~~~e~~~~~~~~~~~~~~~~gV~y~-E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (363)
-++++++..++..+.++++.||..+ +...+|.. . +..++++.++.+
T Consensus 101 ~t~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~-----~--~~~~~~~~~a~~-------------------------- 147 (442)
T PRK07203 101 LTLEDVYYSALICSLEAIKNGVTTVFDHHASPNY-----I--GGSLFTIADAAK-------------------------- 147 (442)
T ss_pred CCHHHHHHHHHHHHHHHHHcCceEEEcccccccc-----c--cchHHHHHHHHH--------------------------
Confidence 3688999999999999999999654 43323211 1 112344444443
Q ss_pred ccccCCCCCCcEEEEEEEeeCCCCHHHHHHHH----HHHHhhCC--CceEEEecC-CCCCCCChhhHHHHHHHHHHcCCc
Q 017943 148 DACNGTRGKKIYVRLLLSIDRRETTEAAMETV----KLALEMRD--LGVVGIDLS-GNPTKGEWTTFLPALKFAREQGLQ 220 (363)
Q Consensus 148 ~~~~~~~~~gi~~~li~~~~r~~~~e~~~~~~----~~a~~~~~--~~vvGidl~-g~e~~~~~~~~~~~~~~A~~~gl~ 220 (363)
+.|+++.+...+......+...+.+ +....+.. ...+...++ ..+..++++.++.+++.|+++|++
T Consensus 148 -------~~GiR~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~lA~~~g~~ 220 (442)
T PRK07203 148 -------KVGLRAMLCYETSDRDGEKELQEGVEENIRFIKHIDEAKDDMVEAMFGLHASFTLSDATLEKCREAVKETGRG 220 (442)
T ss_pred -------HhCCeEEEecccccCCcchhHHHHHHHHHHHHHHhcCCCCCceEEEEccCCCcCcCHHHHHHHHHHHHHcCCc
Confidence 3566665543332211222222222 22222322 224444433 234557889999999999999999
Q ss_pred eeeecCCCCChhh-HH--------HHH-hc---CC-CeeeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCCcc
Q 017943 221 ITLHCGEIPNKEE-IQ--------SML-DF---LP-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHH 286 (363)
Q Consensus 221 ~~~HagE~~~~~~-i~--------~~l-~~---g~-~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~p 286 (363)
+++|++|+..+.. +. +.+ ++ ++ .-++||++++++++++|+++|+.+++||.||+.++. +..|
T Consensus 221 i~~H~~E~~~e~~~~~~~~g~~~v~~l~~~Gll~~~~~~~H~~~~~~~d~~~la~~g~~v~~~P~sn~~l~~----g~~p 296 (442)
T PRK07203 221 YHIHVAEGIYDVSDSHKKYGKDIVERLADFGLLGEKTLAAHCIYLSDEEIDLLKETDTFVVHNPESNMGNAV----GYNP 296 (442)
T ss_pred EEEEecCChHHHHHHHHHcCCCHHHHHHhCCCCCCCcEEEEeecCCHHHHHHHHhcCCeEEECchhhhhccc----CCCC
Confidence 9999999875421 11 112 22 33 347999999999999999999999999999998873 5689
Q ss_pred HHHHHHcCCCEEecCCCCCccCCChHHHHHHHHHHC----C---CCHHHHH-HHHHHHHHHcC
Q 017943 287 FVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAF----S---LGRREMF-QLAKSAVKFIF 341 (363)
Q Consensus 287 i~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~~----~---l~~~~l~-~l~~na~~~sf 341 (363)
+++|+++||+|+||||+. ..||++||+.+.... + .+..++. +++.|++++.-
T Consensus 297 ~~~~~~~Gv~v~lGtD~~---~~d~~~~~~~a~~~~~~~~~~~~~~~~~~~~~aT~~gA~~lg 356 (442)
T PRK07203 297 VLEMIKNGILLGLGTDGY---TSDMFESYKVANFKHKHAGGDPNVGWPESPAMLFENNNKIAE 356 (442)
T ss_pred HHHHHHCCCeEEEcCCCC---CccHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999974 369999999875432 1 2245644 55688887764
No 31
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.81 E-value=1.5e-17 Score=165.61 Aligned_cols=249 Identities=14% Similarity=0.116 Sum_probs=163.6
Q ss_pred CHHHHHHhhhHHHhhcCCHHHHHHHHHHHHHHHHhcCCeEEEEeeCCCcc-ccCCC-CHHHHHHHHHHHHHhhhhccccc
Q 017943 53 SLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRN-ESIGM-SKRSYMDAVVEGLRAVSAVDVDF 130 (363)
Q Consensus 53 ~l~~f~~~f~~~~~~~~~~e~~~~~~~~~~~~~~~~gV~y~E~r~~p~~~-~~~g~-~~~~~~~~v~~~~~~~~~~~~~~ 130 (363)
++.+++..+...... .++++++..++..+.++.+.||..+.-...+... ...+. +.....+++.++.++
T Consensus 69 ~l~~w~~~~~~~~~~-~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~~-------- 139 (418)
T cd01313 69 SFWTWRELMYRFAAR-LTPEQIEAIARQLYIEMLLAGITAVGEFHYVHHDPDGTPYADPAELAQRVIAAASD-------- 139 (418)
T ss_pred ChhhHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHhCCCEEEEeeeeccCCCCCccCChhhhHHHHHHHHHH--------
Confidence 455555433323333 4799999999999999999999888755431110 00111 223334555555543
Q ss_pred cccccccccccccccccccccCCCCCCcEEEEEEEee-CC----CC-----------HHHHHHHHHHHHh-hCCC--ceE
Q 017943 131 ASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSID-RR----ET-----------TEAAMETVKLALE-MRDL--GVV 191 (363)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~~~-r~----~~-----------~e~~~~~~~~a~~-~~~~--~vv 191 (363)
.|+++.+...+. +. .. .+...+.++.+++ +... ..+
T Consensus 140 -------------------------~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (418)
T cd01313 140 -------------------------AGIGITLLPVLYARAGFGGPAPNPGQRRFINGYEDFLGLLEKALRAVKEHAAARI 194 (418)
T ss_pred -------------------------hCCeEEeeeeEEeccCCCCCCCchhhhhhcccHHHHHHHHHHHhhhhccCCceEE
Confidence 456665543322 11 00 1122222333222 1222 234
Q ss_pred EEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChh-h---------HHHHHhc---CC-CeeeEecccCHHHHH
Q 017943 192 GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKE-E---------IQSMLDF---LP-QRIGHACCFEEEEWR 257 (363)
Q Consensus 192 Gidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~-~---------i~~~l~~---g~-~rigHg~~~~~~~~~ 257 (363)
|+...+ +..++++.++.+++.|++ |+++++|++|..... . +..+.+. ++ ..++||+++++++++
T Consensus 195 ~~~p~~-~~~~s~e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~~~~g~~~i~~l~~~g~l~~~~~~~H~~~l~~~~~~ 272 (418)
T cd01313 195 GVAPHS-LRAVPAEQLAALAALASE-KAPVHIHLAEQPKEVDDCLAAHGRRPVELLLDHGHLDARWCLVHATHLTDNETL 272 (418)
T ss_pred EEccCC-CCCCCHHHHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCEEEEeCCCCCHHHHH
Confidence 454443 455788999999999999 999999999875321 1 1111122 33 358999999999999
Q ss_pred HHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCChHHHHHHHHHH--------------CC
Q 017943 258 KLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASA--------------FS 323 (363)
Q Consensus 258 ~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~--------------~~ 323 (363)
+|+++|+.+.+||+||+.++. +..|+++|+++||+|+||||.+. ..+++++|+.+... ..
T Consensus 273 ~la~~g~~v~~~P~sn~~lg~----g~~p~~~l~~~Gv~v~lGtD~~~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (418)
T cd01313 273 LLGRSGAVVGLCPTTEANLGD----GIFPAAALLAAGGRIGIGSDSNA--RIDLLEELRQLEYSQRLRDRARNVLATAGG 346 (418)
T ss_pred HHHHcCCEEEECCCchhhccC----CCCCHHHHHHCCCcEEEecCCCC--CcCHHHHHHHHHHHHHHHhcccccccccCC
Confidence 999999999999999998873 56899999999999999999642 36899998887531 26
Q ss_pred CCHHH-HHHHHHHHHHHcCCC
Q 017943 324 LGRRE-MFQLAKSAVKFIFAN 343 (363)
Q Consensus 324 l~~~~-l~~l~~na~~~sf~~ 343 (363)
++..+ +...+.|++++..++
T Consensus 347 ~~~~~~l~~~T~~gA~alg~~ 367 (418)
T cd01313 347 SSARALLDAALAGGAQALGLA 367 (418)
T ss_pred CCHHHHHHHHHHHHHHHhCCC
Confidence 78877 556689999988764
No 32
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=99.81 E-value=9.7e-18 Score=165.87 Aligned_cols=240 Identities=19% Similarity=0.132 Sum_probs=162.1
Q ss_pred CHHHHHHhhhHHHhhcCCHHHHHHHHHHHHHHHHhcCCeE-EEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccc
Q 017943 53 SLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVY-LELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFA 131 (363)
Q Consensus 53 ~l~~f~~~f~~~~~~~~~~e~~~~~~~~~~~~~~~~gV~y-~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~ 131 (363)
++.+|+..+.+......++++++..++..+.++.+.||.. .++...+. +...++.++
T Consensus 78 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-------------~~~~~~~~~--------- 135 (411)
T cd01298 78 PLMEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADMYFFYP-------------DAVAEAAEE--------- 135 (411)
T ss_pred CHHHHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEECccccch-------------HHHHHHHHH---------
Confidence 4667777666555556678999999999999999999975 44333211 222333322
Q ss_pred ccccccccccccccccccccCCCCCCcEEEEEEEeeCCCC------HHHHHHHHHHHHhhCC---Cc-eEEEecCCCCCC
Q 017943 132 SRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRET------TEAAMETVKLALEMRD---LG-VVGIDLSGNPTK 201 (363)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~~~r~~~------~e~~~~~~~~a~~~~~---~~-vvGidl~g~e~~ 201 (363)
.|+++.+..++.+..+ .....+..+...++.. +. .+++++.+ +..
T Consensus 136 ------------------------~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~ 190 (411)
T cd01298 136 ------------------------LGIRAVLGRGIMDLGTEDVEETEEALAEAERLIREWHGAADGRIRVALAPHA-PYT 190 (411)
T ss_pred ------------------------hCCeEEEEcceecCCCcccccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCC-Ccc
Confidence 2344444444333221 1112222232223222 12 23444443 334
Q ss_pred CChhhHHHHHHHHHHcCCceeeecCCCCChhh----------HHHHHhcC---C-CeeeEecccCHHHHHHHhcCCCcEE
Q 017943 202 GEWTTFLPALKFAREQGLQITLHCGEIPNKEE----------IQSMLDFL---P-QRIGHACCFEEEEWRKLKSSKIPVE 267 (363)
Q Consensus 202 ~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~----------i~~~l~~g---~-~rigHg~~~~~~~~~~l~~~~i~ve 267 (363)
.+++.+.++++.|+++|+++++|++|...... +..+.+.| + .++.||++++++.+++++++|+.++
T Consensus 191 ~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~~~l~~~~~~~l~~~gi~~~ 270 (411)
T cd01298 191 CSDELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKRPVEYLEELGLLGPDVVLAHCVWLTDEEIELLAETGTGVA 270 (411)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCCeEE
Confidence 67889999999999999999999988753311 11112223 2 2689999999999999999999999
Q ss_pred EccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccC-CChHHHHHHHHHH--------CCCCHHHHHH-HHHHHH
Q 017943 268 ICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASA--------FSLGRREMFQ-LAKSAV 337 (363)
Q Consensus 268 ~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~-~~l~~E~~~~~~~--------~~l~~~~l~~-l~~na~ 337 (363)
+||.+|..++. ...|+++++++|+++++|||++..++ .+++.|++.+... .++++.++.+ .+.|++
T Consensus 271 ~~p~~~~~~~~----~~~~~~~~~~~Gv~~~~GsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~~A 346 (411)
T cd01298 271 HNPASNMKLAS----GIAPVPEMLEAGVNVGLGTDGAASNNNLDMFEEMRLAALLQKLAHGDPTALPAEEALEMATIGGA 346 (411)
T ss_pred EChHHhhhhhh----CCCCHHHHHHCCCcEEEeCCCCccCCCcCHHHHHHHHHHHhccccCCCCcCCHHHHHHHHHhhHH
Confidence 99999987752 45799999999999999999987654 7899998876543 2589888555 568999
Q ss_pred HHcCCC
Q 017943 338 KFIFAN 343 (363)
Q Consensus 338 ~~sf~~ 343 (363)
+...++
T Consensus 347 ~~lg~~ 352 (411)
T cd01298 347 KALGLD 352 (411)
T ss_pred HHhCCc
Confidence 988765
No 33
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=99.81 E-value=2.1e-17 Score=165.06 Aligned_cols=268 Identities=17% Similarity=0.144 Sum_probs=172.9
Q ss_pred CCc-chhccccCCCCCHHHHHHHHHHhccCCCCCccchHHHHhhcCCCHHHHHHhhhHHH-hhcCCHHHHHHHHHHHHHH
Q 017943 7 MPK-VELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIH-VLTTDHATVTRITQEVVED 84 (363)
Q Consensus 7 lPK-~eLH~HL~Gsi~~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~f~~~~-~~~~~~e~~~~~~~~~~~~ 84 (363)
||- |+.|+|+..++... .. ...++.+++..+.+.. ..+.++++.+..+...+.+
T Consensus 64 ~PGlVn~H~Hl~~~~~rg-------------~~-----------~~~~l~~wl~~~~~~~e~~~~~~~~~~~~a~~~~~e 119 (429)
T cd01303 64 LPGFIDTHIHAPQYANIG-------------SG-----------LGEPLLDWLETYTFPEEAKFADPAYAREVYGRFLDE 119 (429)
T ss_pred ecceeeeeeccccccccc-------------cc-----------CCCcHHHHHHhhhhHHHHhcCCHHHHHHHHHHHHHH
Confidence 676 99999996654211 10 0124555555433322 2235678888889999999
Q ss_pred HHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEE
Q 017943 85 FASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLL 164 (363)
Q Consensus 85 ~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~ 164 (363)
+.+.||..+=-..+ .. .+..++++++.++ .|+++.+..
T Consensus 120 ~l~~GvTtv~d~~~--------~~-~~~~~~~~~a~~~---------------------------------~G~R~~~~~ 157 (429)
T cd01303 120 LLRNGTTTACYFAT--------IH-PESTEALFEEAAK---------------------------------RGQRAIAGK 157 (429)
T ss_pred HHhCCceEEEeecc--------cC-hhHHHHHHHHHHH---------------------------------hCCeEEEee
Confidence 99999976621111 01 1123444444432 455554443
Q ss_pred EeeCCC-------CHHH-HHHHHHHHHhhCC-CceEEEecC-CCCCCCChhhHHHHHHHHHHcC-CceeeecCCCCCh-h
Q 017943 165 SIDRRE-------TTEA-AMETVKLALEMRD-LGVVGIDLS-GNPTKGEWTTFLPALKFAREQG-LQITLHCGEIPNK-E 232 (363)
Q Consensus 165 ~~~r~~-------~~e~-~~~~~~~a~~~~~-~~vvGidl~-g~e~~~~~~~~~~~~~~A~~~g-l~~~~HagE~~~~-~ 232 (363)
...... .... ..+..+...++.. .+.+...++ ..+...+++.++.+++.|+++| +++++|++|+..+ +
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~ 237 (429)
T cd01303 158 VCMDRNAPEYYRDTAESSYRDTKRLIERWHGKSGRVKPAITPRFAPSCSEELLAALGKLAKEHPDLHIQTHISENLDEIA 237 (429)
T ss_pred eeecCCCCcccccCHHHHHHHHHHHHHHHhCcCCceEEEEecCcCCcCCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHH
Confidence 332211 1111 1122222222322 133333333 2345677899999999999999 9999999987543 1
Q ss_pred hHH----------HHH-hc---CC-CeeeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCE
Q 017943 233 EIQ----------SML-DF---LP-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPL 297 (363)
Q Consensus 233 ~i~----------~~l-~~---g~-~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v 297 (363)
.+. +.+ ++ |+ ..++||++++++++++++++|+.+.+||+||+.++. +..|+++|+++|++|
T Consensus 238 ~~~~~~g~~~~p~~~l~~~G~l~~~~~l~H~~~l~~~~~~~l~~~g~~v~~~P~sn~~l~~----g~~~~~~~~~~Gv~v 313 (429)
T cd01303 238 WVKELFPGARDYLDVYDKYGLLTEKTVLAHCVHLSEEEFNLLKERGASVAHCPTSNLFLGS----GLFDVRKLLDAGIKV 313 (429)
T ss_pred HHHHHcCCCCCHHHHHHHCCCCCCCcEEEeCCCCCHHHHHHHHHcCCEEEECccchhhhcc----CCCCHHHHHHCCCeE
Confidence 111 112 22 33 358999999999999999999999999999998873 567999999999999
Q ss_pred EecCCCCCccCCChHHHHHHHHHH-----------CCCCHHHHHH-HHHHHHHHcCCCh
Q 017943 298 VLCTDDSGVFSTSVSREYDLAASA-----------FSLGRREMFQ-LAKSAVKFIFANG 344 (363)
Q Consensus 298 ~l~TDd~~~~~~~l~~E~~~~~~~-----------~~l~~~~l~~-l~~na~~~sf~~~ 344 (363)
++|||+++.++.+|+++++.+... .+++..++.+ .+.|++++..+++
T Consensus 314 ~lGtD~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~aT~~gA~~lg~~~ 372 (429)
T cd01303 314 GLGTDVGGGTSFSMLDTLRQAYKVSRLLGYELGGHAKLSPAEAFYLATLGGAEALGLDD 372 (429)
T ss_pred EEeccCCCCCCccHHHHHHHHHHHHHhhccccCCcCCCCHHHHHHHHhhHHHHHcCCCC
Confidence 999999866668999999887642 1357778555 5689999988754
No 34
>PRK08418 chlorohydrolase; Provisional
Probab=99.81 E-value=1.4e-17 Score=165.20 Aligned_cols=141 Identities=20% Similarity=0.160 Sum_probs=112.5
Q ss_pred CCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhh-H------------------------HHHH-hcC-C-CeeeEec
Q 017943 198 NPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEE-I------------------------QSML-DFL-P-QRIGHAC 249 (363)
Q Consensus 198 ~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~-i------------------------~~~l-~~g-~-~rigHg~ 249 (363)
.++.++++.++.+.+.|+++|+++++|++|+..+.. + .+.+ .+| + ..++||+
T Consensus 183 ~~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~~~~~~~~~~~~~~~~~pv~~l~~~g~~~~~~~H~~ 262 (408)
T PRK08418 183 SPYSVHPILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWFKKFFEKFLKEPKPLYTPKEFLELFKGLRTLFTHCV 262 (408)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCchhhhhhhhcccccccCCHHHHHHHhCCCCeEEEecc
Confidence 356688999999999999999999999999753311 1 1111 233 2 3479999
Q ss_pred ccCHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccC-CChHHHHHHHHHHC-CC---
Q 017943 250 CFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASAF-SL--- 324 (363)
Q Consensus 250 ~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~-~~l~~E~~~~~~~~-~l--- 324 (363)
+++++++++|+++|+.+.+||+||+.++. +..|+++|+++|++|+||||+++.++ .++++||+.+.... +.
T Consensus 263 ~~~~~di~~la~~g~~v~~cP~sn~~lg~----g~~p~~~~~~~Gi~v~lGtD~~~~~~~~~~~~em~~~~~~~~~~~~~ 338 (408)
T PRK08418 263 YASEEELEKIKSKNASITHCPFSNRLLSN----KALDLEKAKKAGINYSIATDGLSSNISLSLLDELRAALLTHANMPLL 338 (408)
T ss_pred cCCHHHHHHHHHcCCcEEECHhHHHHhcC----CCccHHHHHhCCCeEEEeCCCCCCCCCcCHHHHHHHHHHHhccCCcc
Confidence 99999999999999999999999999884 46899999999999999999877665 89999999877532 22
Q ss_pred -CHHH-HHHHHHHHHHHcCC
Q 017943 325 -GRRE-MFQLAKSAVKFIFA 342 (363)
Q Consensus 325 -~~~~-l~~l~~na~~~sf~ 342 (363)
+.++ +...+.|++++..+
T Consensus 339 ~~~~~~l~~aT~~gA~alg~ 358 (408)
T PRK08418 339 ELAKILLLSATRYGAKALGL 358 (408)
T ss_pred ccHHHHHHHHHHHHHHHhCC
Confidence 2455 55668999998775
No 35
>TIGR02022 hutF formiminoglutamate deiminase. In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate.
Probab=99.80 E-value=2.8e-17 Score=165.35 Aligned_cols=248 Identities=13% Similarity=0.087 Sum_probs=160.1
Q ss_pred CHHHHHHhhhHHHhhcCCHHHHHHHHHHHHHHHHhcCCeEEEEeeCCCcc-ccCCCC-HHHHHHHHHHHHHhhhhccccc
Q 017943 53 SLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRN-ESIGMS-KRSYMDAVVEGLRAVSAVDVDF 130 (363)
Q Consensus 53 ~l~~f~~~f~~~~~~~~~~e~~~~~~~~~~~~~~~~gV~y~E~r~~p~~~-~~~g~~-~~~~~~~v~~~~~~~~~~~~~~ 130 (363)
++.+++..+...... .++++++..++..+.++++.||..+.-....... ...+++ ..+..+++.++.++
T Consensus 78 ~l~~w~~~~~~~~~~-~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e-------- 148 (455)
T TIGR02022 78 SFWTWRELMYRFVDR-LTPEQLQAIARQLYVEMLEAGFTRVGEFHYLHHAPDGTPYADPAEMAERIAAAAAD-------- 148 (455)
T ss_pred CHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHhCCCEEEeeeeecccCCCccccchhhhHHHHHHHHHH--------
Confidence 344444433222333 4789999999999999999999888765432110 011221 12335666666654
Q ss_pred cccccccccccccccccccccCCCCCCcEEEEEEEeeC-C---------------CCHHHHHHHHHHHHh-hCC--CceE
Q 017943 131 ASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDR-R---------------ETTEAAMETVKLALE-MRD--LGVV 191 (363)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~~~r-~---------------~~~e~~~~~~~~a~~-~~~--~~vv 191 (363)
.|+++.+...+.. . ..++...+.++...+ +.. ...+
T Consensus 149 -------------------------~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (455)
T TIGR02022 149 -------------------------AGIGLTLLPVFYAHSGFGGAAPNPGQRRFIHDVERFARLVEVLRRELAAQPAAVL 203 (455)
T ss_pred -------------------------hCCeEEeeeeeeecCCCCCCCCcccchhhccCHHHHHHHHHHHHHHhccCCceEE
Confidence 3455444322110 0 011222222222221 111 2344
Q ss_pred EEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChh-h---------HHHHHhcC---C-CeeeEecccCHHHHH
Q 017943 192 GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKE-E---------IQSMLDFL---P-QRIGHACCFEEEEWR 257 (363)
Q Consensus 192 Gidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~-~---------i~~~l~~g---~-~rigHg~~~~~~~~~ 257 (363)
|+... .+..++++.+..+++ |+++|+++++|++|+..+. . +....++| + ..++||+++++++++
T Consensus 204 ~~~p~-~~~~~s~e~l~~~~~-a~~~g~~v~~H~~e~~~e~~~~~~~~G~~~v~~l~~~g~l~~~~~~~H~~~l~~~d~~ 281 (455)
T TIGR02022 204 GLAPH-SLRAVTPEQLAAVLQ-ASDRQAPVHIHVAEQQKEVDDCLAWSGRRPVEWLLDHGPVDARWCLVHATHLTDEETA 281 (455)
T ss_pred EEecC-CCCcCCHHHHHHHHH-HHhCCCceEEEECCChHHHHHHHHHhCCCHHHHHHHcCCCCCCEEEEEeecCCHHHHH
Confidence 55554 344578899999999 8899999999999875431 1 11122233 3 258999999999999
Q ss_pred HHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCChHHHHHHHHHHC---------------
Q 017943 258 KLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAF--------------- 322 (363)
Q Consensus 258 ~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~~--------------- 322 (363)
+|++.|+.+.+||+||+.++. +..|+++|+++|++|+||||+. ...++++||+.+....
T Consensus 282 ~la~~g~~v~~~P~sn~~lg~----g~~pi~~l~~~Gv~v~lGTD~~--~~~d~~~~m~~a~~~~~~~~~~~~~~~~~~~ 355 (455)
T TIGR02022 282 LLARSGAVAGLCPTTEANLGD----GIFPAVDFVAAGGRFGIGSDSH--VVIDVAEELRQLEYGQRLRDRARNVLAAGPG 355 (455)
T ss_pred HHHHcCCeEEEChhhhccccC----CCCCHHHHHHCCCeEEEECCCC--CCCCHHHHHHHHHHHHHHHhcccccccCCcc
Confidence 999999999999999998873 5689999999999999999963 2469999999875421
Q ss_pred CCCHHH-HHHHHHHHHHHcCC
Q 017943 323 SLGRRE-MFQLAKSAVKFIFA 342 (363)
Q Consensus 323 ~l~~~~-l~~l~~na~~~sf~ 342 (363)
.++.++ +...+.||+++..+
T Consensus 356 ~~~~~~~l~~aT~~gAralg~ 376 (455)
T TIGR02022 356 PSVGRALYDAALLGGAQALGL 376 (455)
T ss_pred cchHHHHHHHHHHHHHHHhCC
Confidence 234556 56778999998875
No 36
>PRK06380 metal-dependent hydrolase; Provisional
Probab=99.79 E-value=3.9e-17 Score=162.66 Aligned_cols=260 Identities=15% Similarity=0.137 Sum_probs=167.9
Q ss_pred CCc-chhccccCCCCCHHHHHHHHHHhccCCCCCccchHHHHhhcCCCHHHHHHhhhHHHhhcCCHHHHHHHHHHHHHHH
Q 017943 7 MPK-VELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDF 85 (363)
Q Consensus 7 lPK-~eLH~HL~Gsi~~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~f~~~~~~~~~~e~~~~~~~~~~~~~ 85 (363)
+|- |+.|+|+..+.... .. ...++.+|+..+..... ..++++++..+...+.++
T Consensus 53 ~PG~Vd~H~Hl~~~~~rg-------------~~-----------~~~~l~~~~~~~~~~~~-~~~~e~~~~~~~~~~~e~ 107 (418)
T PRK06380 53 MPGLINTHAHVGMTASKG-------------LF-----------DDVDLEEFLMKTFKYDS-KRTREGIYNSAKLGMYEM 107 (418)
T ss_pred ccCEEeeccCCCccccCC-------------cc-----------cCCCHHHHHHHHHhhhh-cCCHHHHHHHHHHHHHHH
Confidence 676 99999997764321 10 11244555554322222 347899999999999999
Q ss_pred HhcCCeEE-EEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEE
Q 017943 86 ASENIVYL-ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLL 164 (363)
Q Consensus 86 ~~~gV~y~-E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~ 164 (363)
.+.||..+ ++.+ + .+++.++.++ .|+++.+..
T Consensus 108 l~~G~Tt~~d~~~----------~----~~~~~~a~~~---------------------------------~G~r~~~~~ 140 (418)
T PRK06380 108 INSGITAFVDLYY----------S----EDIIAKAAEE---------------------------------LGIRAFLSW 140 (418)
T ss_pred HhcCCeEEEcccc----------C----hHHHHHHHHH---------------------------------hCCeEEEec
Confidence 99999754 2211 1 1333344332 445544433
Q ss_pred EeeC-CCCH---HHHHHHHHHHHhhCCCc--eEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhh-----
Q 017943 165 SIDR-RETT---EAAMETVKLALEMRDLG--VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEE----- 233 (363)
Q Consensus 165 ~~~r-~~~~---e~~~~~~~~a~~~~~~~--vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~----- 233 (363)
.... .... ....+..+...++.... ..+++..|. ..++++.++.+++.|+++|+++++|++|+..+-.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~ 219 (418)
T PRK06380 141 AVLDEEITTQKGDPLNNAENFIREHRNEELVTPSIGVQGI-YVANDETYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKR 219 (418)
T ss_pred ccccCCcccccchHHHHHHHHHHHhcCCCCeEEEEECCCC-ccCCHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHH
Confidence 2221 1100 01111122222222222 234555443 4578899999999999999999999999643210
Q ss_pred -----HHHHHhc---CC-CeeeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCC
Q 017943 234 -----IQSMLDF---LP-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDS 304 (363)
Q Consensus 234 -----i~~~l~~---g~-~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~ 304 (363)
+.....+ ++ ..++||++++++++++++++|+.+.+||.||..++. -+..|+++++++||+|++|||++
T Consensus 220 ~g~~~ie~~~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~l~~---~g~~p~~~~~~~Gv~v~lGTD~~ 296 (418)
T PRK06380 220 TGERPVEHLEKIGFLNSKLIAAHCVWATYHEIKLLSKNGVKVSWNSVSNFKLGT---GGSPPIPEMLDNGINVTIGTDSN 296 (418)
T ss_pred hCCCHHHHHHHCCCCCCCeEEEEeecCCHHHHHHHHHcCCEEEECHHHHHhhcc---CCCCcHHHHHHCCCeEEEcCCCC
Confidence 1111122 23 247999999999999999999999999999998763 13579999999999999999997
Q ss_pred CccC-CChHHHHHHHHHHC--------CCCHHHHH-HHHHHHHHHcCC
Q 017943 305 GVFS-TSVSREYDLAASAF--------SLGRREMF-QLAKSAVKFIFA 342 (363)
Q Consensus 305 ~~~~-~~l~~E~~~~~~~~--------~l~~~~l~-~l~~na~~~sf~ 342 (363)
+.++ .+++.+++.+.... .++..++. ..+.|+++...+
T Consensus 297 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~lg~ 344 (418)
T PRK06380 297 GSNNSLDMFEAMKFSALSVKNERWDASIIKAQEILDFATINAAKALEL 344 (418)
T ss_pred cCCCCcCHHHHHHHHHHHhhhccCCCCcCCHHHHHHHHHHHHHHHhCC
Confidence 7655 79999998775421 26777754 556899988765
No 37
>PRK12393 amidohydrolase; Provisional
Probab=99.79 E-value=4e-17 Score=164.41 Aligned_cols=273 Identities=15% Similarity=0.106 Sum_probs=174.3
Q ss_pred CCc-chhccccCCCCCHHHHHHHHHHhccCCCCCccchHHHHhhcCCCHHHHHHhhhHHHhhcCCHHHHHHHHHHHHHHH
Q 017943 7 MPK-VELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDF 85 (363)
Q Consensus 7 lPK-~eLH~HL~Gsi~~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~f~~~~~~~~~~e~~~~~~~~~~~~~ 85 (363)
+|- |+.|+|+..++-... .. + ...++.+|+..+.+...-..++++++..++..+.++
T Consensus 58 ~PG~VnaH~Hl~~~~~rg~----~~-----~-------------~~~~~~~wl~~~~~~~~~~~~~~~~~~~a~~~~~e~ 115 (457)
T PRK12393 58 YPGWVNTHHHLFQSLLKGV----PA-----G-------------INQSLTAWLAAVPYRFRARFDEDLFRLAARIGLVEL 115 (457)
T ss_pred ecCEeecccCccccccccc----cc-----c-------------cCCchHHHhhhCcchhhhhCCHHHHHHHHHHHHHHH
Confidence 566 999999887753311 00 0 012344555443322222347899999999999999
Q ss_pred HhcCCeEE-EEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEE
Q 017943 86 ASENIVYL-ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLL 164 (363)
Q Consensus 86 ~~~gV~y~-E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~ 164 (363)
.+.||..+ +..+. . + .+.. .+..+++.++.++ .|+++.+..
T Consensus 116 l~~G~Ttv~d~~~~-~-~--~~~~-~~~~~~~~~a~~~---------------------------------~G~R~~~~~ 157 (457)
T PRK12393 116 LRSGCTTVADHHYL-Y-H--PGMP-FDTGDILFDEAEA---------------------------------LGMRFVLCR 157 (457)
T ss_pred HhCCccEeecchhh-c-c--cccc-cchHHHHHHHHHH---------------------------------cCCeEEEEc
Confidence 99999655 32211 0 0 1111 1234555555443 456655543
Q ss_pred EeeC-----------C---CCHHHHHHHHHHHH-hhCC---CceEE--EecCCCCCCCChhhHHHHHHHHHHcCCceeee
Q 017943 165 SIDR-----------R---ETTEAAMETVKLAL-EMRD---LGVVG--IDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (363)
Q Consensus 165 ~~~r-----------~---~~~e~~~~~~~~a~-~~~~---~~vvG--idl~g~e~~~~~~~~~~~~~~A~~~gl~~~~H 224 (363)
.... . ...+.+.+..+... .+.. ...+. +...+.....+++.+..+++.|+++|+++++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~a~~~g~~~~~H 237 (457)
T PRK12393 158 GGATQTRGDHPGLPTALRPETLDQMLADVERLVSRYHDASPDSLRRVVVAPTTPTFSLPPELLREVARAARGMGLRLHSH 237 (457)
T ss_pred cccccccccCCCCCCcccccCHHHHHHHHHHHHHHhcCCCcCCceEEEEcCCCCCCCcCHHHHHHHHHHHHHcCCeEEEE
Confidence 3221 0 11122222222222 2221 12333 33333325678899999999999999999999
Q ss_pred cCCCCChh-hHH--------HHH-h---cCC-CeeeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHH
Q 017943 225 CGEIPNKE-EIQ--------SML-D---FLP-QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDL 290 (363)
Q Consensus 225 agE~~~~~-~i~--------~~l-~---~g~-~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l 290 (363)
++|+..+. ... +.+ . +++ .+++||+++++++++++++.|+.+.+||+||..++. +..|+++|
T Consensus 238 ~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~v~~~P~sn~~lg~----g~~~~~~~ 313 (457)
T PRK12393 238 LSETVDYVDFCREKYGMTPVQFVAEHDWLGPDVWFAHLVKLDAEEIALLAQTGTGIAHCPQSNGRLGS----GIAPALAM 313 (457)
T ss_pred eCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCeEEECchhhhhhcc----cCCCHHHH
Confidence 99875321 110 111 2 233 358999999999999999999999999999998873 46899999
Q ss_pred HHcCCCEEecCCCCCccC-CChHHHHHHHHHHC-------CCCHHHHH-HHHHHHHHHcCCC
Q 017943 291 YKAQHPLVLCTDDSGVFS-TSVSREYDLAASAF-------SLGRREMF-QLAKSAVKFIFAN 343 (363)
Q Consensus 291 ~~~Gv~v~l~TDd~~~~~-~~l~~E~~~~~~~~-------~l~~~~l~-~l~~na~~~sf~~ 343 (363)
+++|++|++|||++..++ .|++.+++.+.... .++.+++. .++.|+.+...++
T Consensus 314 ~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~T~~~A~~l~~~ 375 (457)
T PRK12393 314 EAAGVPVSLGVDGAASNESADMLSEAHAAWLLHRAEGGADATTVEDVVHWGTAGGARVLGLD 375 (457)
T ss_pred HHCCCeEEEecCCcccCCCccHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHhHHHHHHhCCC
Confidence 999999999999987655 89999998765432 26777754 5578899888764
No 38
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=99.79 E-value=4.5e-17 Score=161.33 Aligned_cols=142 Identities=16% Similarity=0.162 Sum_probs=113.1
Q ss_pred CCCCChhhHHHHHHHHHHc-CCceeeecCCCCChh-hHH----------HHH-hc---CCC-eeeEecccCHHHHHHHhc
Q 017943 199 PTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNKE-EIQ----------SML-DF---LPQ-RIGHACCFEEEEWRKLKS 261 (363)
Q Consensus 199 e~~~~~~~~~~~~~~A~~~-gl~~~~HagE~~~~~-~i~----------~~l-~~---g~~-rigHg~~~~~~~~~~l~~ 261 (363)
+...+++.++.+++.|+++ |+++++|++|...+. .+. +.+ ++ |++ .++||+++++++++++++
T Consensus 180 ~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~g~lg~~~~~~H~~~~~~~~~~~l~~ 259 (401)
T TIGR02967 180 APTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHYGLLGRRSVFAHCIHLSDEECQRLAE 259 (401)
T ss_pred CCcCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHCCCCCCCeEEEecccCCHHHHHHHHH
Confidence 3456789999999999999 999999999876431 111 112 22 343 369999999999999999
Q ss_pred CCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCChHHHHHHHHHH-----CCCCHHHHHH-HHHH
Q 017943 262 SKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASA-----FSLGRREMFQ-LAKS 335 (363)
Q Consensus 262 ~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~-----~~l~~~~l~~-l~~n 335 (363)
+|+.+.+||+||+.++. ...|+++|+++|++|++|||.+.....++.++++.+... .+++..++.+ .+.|
T Consensus 260 ~g~~v~~~P~~~~~~~~----g~~~~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~ 335 (401)
T TIGR02967 260 TGAAIAHCPTSNLFLGS----GLFNLKKALEHGVRVGLGTDVGGGTSFSMLQTLREAYKVSQLQGARLSPFEAFYLATLG 335 (401)
T ss_pred cCCeEEEChHHHHHhcc----CCCCHHHHHHCCCeEEEecCCCCCCCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 99999999999998773 568999999999999999998754457899999887654 4689988655 4689
Q ss_pred HHHHcCCCh
Q 017943 336 AVKFIFANG 344 (363)
Q Consensus 336 a~~~sf~~~ 344 (363)
++++..+++
T Consensus 336 ~A~~lg~~~ 344 (401)
T TIGR02967 336 GARALDLDD 344 (401)
T ss_pred HHHHhCCcC
Confidence 999887653
No 39
>PRK08204 hypothetical protein; Provisional
Probab=99.79 E-value=4.3e-17 Score=163.73 Aligned_cols=148 Identities=17% Similarity=0.179 Sum_probs=116.9
Q ss_pred EEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCC---hhhHHHHHhcCC----CeeeEecccCHHHHHHHhcCCC
Q 017943 192 GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPN---KEEIQSMLDFLP----QRIGHACCFEEEEWRKLKSSKI 264 (363)
Q Consensus 192 Gidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~---~~~i~~~l~~g~----~rigHg~~~~~~~~~~l~~~~i 264 (363)
|+...+ +...+++.+..+++.|+++|+++++|+.|... ...+..+.+.|. ..+.||++++++++++|+++|+
T Consensus 189 ~~~~~~-~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~l~~~g~~~~~~~i~H~~~~~~~~~~~la~~g~ 267 (449)
T PRK08204 189 GLAIRG-PEFSSWEVARADFRLARELGLPISMHQGFGPWGATPRGVEQLHDAGLLGPDLNLVHGNDLSDDELKLLADSGG 267 (449)
T ss_pred EEecCC-cccCCHHHHHHHHHHHHHcCCcEEEEEcCCCcccCCCHHHHHHHCCCCCCCeEEEecCCCCHHHHHHHHHcCC
Confidence 344444 34457788999999999999999999988643 223444444443 3699999999999999999999
Q ss_pred cEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCChHHHHHHHHHH-------------------CCCC
Q 017943 265 PVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASA-------------------FSLG 325 (363)
Q Consensus 265 ~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~-------------------~~l~ 325 (363)
.+++||.||..++. ...|+++++++||+|++|||.+...+.+++.+++.+... .+++
T Consensus 268 ~v~~~P~~~~~~g~----~~~~~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (449)
T PRK08204 268 SFSVTPEIEMMMGH----GYPVTGRLLAHGVRPSLGVDVVTSTGGDMFTQMRFALQAERARDNAVHLREGGMPPPRLTLT 343 (449)
T ss_pred CEEEChHHHhhhcC----CCCcHHHHHhcCCceeeccccCCCCCcCHHHHHHHHHHHHHhhcccccccccccCCCcCCCC
Confidence 99999999987763 467999999999999999998766668999999887642 3578
Q ss_pred HHH-HHHHHHHHHHHcCCCh
Q 017943 326 RRE-MFQLAKSAVKFIFANG 344 (363)
Q Consensus 326 ~~~-l~~l~~na~~~sf~~~ 344 (363)
..+ ++..+.|+++..++++
T Consensus 344 ~~~al~~~T~~gA~~lg~~~ 363 (449)
T PRK08204 344 ARQVLEWATIEGARALGLED 363 (449)
T ss_pred HHHHHHHHhHHHHHHcCCCC
Confidence 877 5566789999988754
No 40
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=99.78 E-value=7.3e-17 Score=161.32 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=111.1
Q ss_pred CCCCChhhHHHHHHHHHHcCCceeeecCCCCChhh----------HHHHHhc---CC-CeeeEecccCHHHHHHHhcCCC
Q 017943 199 PTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEE----------IQSMLDF---LP-QRIGHACCFEEEEWRKLKSSKI 264 (363)
Q Consensus 199 e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~----------i~~~l~~---g~-~rigHg~~~~~~~~~~l~~~~i 264 (363)
+..++++.++.+++.|+++|+++++|+.|...... +....+. ++ ..+.||++++++++++|+++|+
T Consensus 184 ~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G~~~i~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~ 263 (430)
T PRK06038 184 PYTCSEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYGMCSVNYLDDIGFLGPDVLAAHCVWLSDGDIEILRERGV 263 (430)
T ss_pred CccCCHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEecCCHHHHHHHHhcCC
Confidence 44577899999999999999999999999753211 1111122 33 3469999999999999999999
Q ss_pred cEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccC-CChHHHHHHHHHH--------CCCCHHHHH-HHHH
Q 017943 265 PVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASA--------FSLGRREMF-QLAK 334 (363)
Q Consensus 265 ~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~-~~l~~E~~~~~~~--------~~l~~~~l~-~l~~ 334 (363)
.+++||.||..++. +..|+++|+++||+|++|||++...+ .|++++++.+... .++++.++. ..+.
T Consensus 264 ~v~~~P~~n~~~~~----~~~p~~~~~~~Gv~v~lGtD~~~~~~~~d~~~~~~~a~~~~~~~~~~~~~~~~~~al~~aT~ 339 (430)
T PRK06038 264 NVSHNPVSNMKLAS----GIAPVPKLLERGVNVSLGTDGCASNNNLDMFEEMKTAALLHKVNTMDPTALPARQVLEMATV 339 (430)
T ss_pred EEEEChHHhhhhcc----CCCCHHHHHHCCCeEEEeCCCCccCCCcCHHHHHHHHHHHhhhccCCCCcCCHHHHHHHHhH
Confidence 99999999998763 45799999999999999999876654 7999999887532 256778854 5567
Q ss_pred HHHHHcCCC
Q 017943 335 SAVKFIFAN 343 (363)
Q Consensus 335 na~~~sf~~ 343 (363)
|+.+....+
T Consensus 340 ~gA~~lg~~ 348 (430)
T PRK06038 340 NGAKALGIN 348 (430)
T ss_pred HHHHHhCCC
Confidence 999988763
No 41
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=99.78 E-value=1.2e-16 Score=160.92 Aligned_cols=247 Identities=13% Similarity=0.089 Sum_probs=158.4
Q ss_pred CHHHHHHhhhHHHhhcCCHHHHHHHHHHHHHHHHhcCCeEEEEeeCC--CccccCCC-CHHHHHHHHHHHHHhhhhcccc
Q 017943 53 SLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTP--KRNESIGM-SKRSYMDAVVEGLRAVSAVDVD 129 (363)
Q Consensus 53 ~l~~f~~~f~~~~~~~~~~e~~~~~~~~~~~~~~~~gV~y~E~r~~p--~~~~~~g~-~~~~~~~~v~~~~~~~~~~~~~ 129 (363)
++.+++..+..... ..++++++..++..+.++.+.||..+.-.... ... ...+ +..+..+++.++.++
T Consensus 78 ~l~~w~~~~~~~~~-~~~~e~~~~~a~~~~~e~L~~G~Ttv~d~~~~~~~~~-~~~~~~~~~~~~a~~~a~~e------- 148 (456)
T PRK09229 78 SFWSWRELMYRFAL-RLTPDQLEAIARQLYVEMLEAGYTSVGEFHYLHHDPD-GTPYADPAEMALRIVAAARA------- 148 (456)
T ss_pred ChHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhhCCcEEEeeeeeccCCC-CCccCChHHHHHHHHHHHHH-------
Confidence 44455543322222 35789999999999999999999777544321 111 0111 122344666666554
Q ss_pred ccccccccccccccccccccccCCCCCCcEEEEEEEee-CC---------------CCHHHHHHHHHHHHh-hCCCc--e
Q 017943 130 FASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSID-RR---------------ETTEAAMETVKLALE-MRDLG--V 190 (363)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~~~-r~---------------~~~e~~~~~~~~a~~-~~~~~--v 190 (363)
.|+++.+...+. +. ...+...+.++...+ +...+ .
T Consensus 149 --------------------------~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (456)
T PRK09229 149 --------------------------AGIGLTLLPVLYAHSGFGGQPPNPGQRRFINDPDGFLRLLEALRRALAALPGAR 202 (456)
T ss_pred --------------------------cCCEEEeceeeeecCCCCCCCCchhhcccccCHHHHHHHHHHHHHhhcCCCceE
Confidence 455544432111 10 011222222222222 22222 2
Q ss_pred EEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChh-hH--------HHHH-hc---CC-CeeeEecccCHHHH
Q 017943 191 VGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKE-EI--------QSML-DF---LP-QRIGHACCFEEEEW 256 (363)
Q Consensus 191 vGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~-~i--------~~~l-~~---g~-~rigHg~~~~~~~~ 256 (363)
+|+...+ +..++++.++.+++.| ++|+++++|++|+.... .+ .+.+ +. ++ ..++||++++++++
T Consensus 203 ~~~~p~~-~~~~s~e~l~~~~~~A-~~g~~i~~H~~e~~~e~~~~~~~~g~~~~~~l~~~g~l~~~~~l~H~~~l~~~d~ 280 (456)
T PRK09229 203 LGLAPHS-LRAVTPDQLAAVLALA-APDGPVHIHIAEQTKEVDDCLAWSGARPVEWLLDHAPVDARWCLVHATHLTDAET 280 (456)
T ss_pred EEEeCCC-CCCCCHHHHHHHHHHh-cCCCceEEEeCCCHHHHHHHHHHcCCCHHHHHHHcCCCCCCeEEEeeccCCHHHH
Confidence 3444443 4457889999999999 99999999999875321 11 1112 22 33 36899999999999
Q ss_pred HHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCChHHHHHHHHHH---------------
Q 017943 257 RKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASA--------------- 321 (363)
Q Consensus 257 ~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~--------------- 321 (363)
++|++.|+.+.+||+||+.++. +..|+++|+++|++|+||||.+. +.+++.+++.+...
T Consensus 281 ~~la~~g~~v~~~P~sn~~lg~----g~~p~~~l~~~Gv~v~lGtD~~~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (456)
T PRK09229 281 ARLARSGAVAGLCPTTEANLGD----GIFPAVDYLAAGGRFGIGSDSHV--SIDLVEELRLLEYGQRLRDRRRNVLAAAA 354 (456)
T ss_pred HHHHHcCCeEEECchhhhhhcC----CCCCHHHHHHCCCeEEEecCCCC--CCCHHHHHHHHHHHHHHhhcCCccccccc
Confidence 9999999999999999998873 56899999999999999999643 46899999887632
Q ss_pred CCCCHHHH-HHHHHHHHHHcCC
Q 017943 322 FSLGRREM-FQLAKSAVKFIFA 342 (363)
Q Consensus 322 ~~l~~~~l-~~l~~na~~~sf~ 342 (363)
..++..++ ...+.||+++..+
T Consensus 355 ~~~~~~~~l~~aT~~gA~alg~ 376 (456)
T PRK09229 355 QPSVGRRLFDAALAGGAQALGR 376 (456)
T ss_pred ccchHHHHHHHHHHHHHHHhCC
Confidence 12356664 5667999988765
No 42
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=99.77 E-value=1.6e-16 Score=159.86 Aligned_cols=151 Identities=20% Similarity=0.252 Sum_probs=117.3
Q ss_pred ceEEEecCC-CCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhh----------HHHHHhcC---C-CeeeEecccCH
Q 017943 189 GVVGIDLSG-NPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEE----------IQSMLDFL---P-QRIGHACCFEE 253 (363)
Q Consensus 189 ~vvGidl~g-~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~----------i~~~l~~g---~-~rigHg~~~~~ 253 (363)
..+.+.+++ .+...+++.+..+++.|+++|+++++|++|...... +....+.| + .++.||+++++
T Consensus 197 ~~i~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~~~~~~H~~~l~~ 276 (451)
T PRK08203 197 AMLRIALAPCSPFSVSRELMRESAALARRLGVRLHTHLAETLDEEAFCLERFGMRPVDYLEDLGWLGPDVWLAHCVHLDD 276 (451)
T ss_pred CeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEEeCCCH
Confidence 355555543 345577899999999999999999999998764311 11111233 3 35899999999
Q ss_pred HHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccC-CChHHHHHHHHHHC-------CCC
Q 017943 254 EEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASAF-------SLG 325 (363)
Q Consensus 254 ~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~-~~l~~E~~~~~~~~-------~l~ 325 (363)
+++++|+++|+.+.+||+||..++. ...|++.++++|++|++|||++..++ .+++.|++.+.... .++
T Consensus 277 ~~~~~la~~g~~v~~~P~~~~~l~~----~~~~~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 352 (451)
T PRK08203 277 AEIARLARTGTGVAHCPCSNMRLAS----GIAPVRELRAAGVPVGLGVDGSASNDGSNLIGEARQALLLQRLRYGPDAMT 352 (451)
T ss_pred HHHHHHHhcCCeEEECcHHhhhhcc----CCCCHHHHHHCCCeEEEecCCCccCCCcCHHHHHHHHHHHhhcccCCCCCC
Confidence 9999999999999999999998763 56899999999999999999987665 79999998765322 278
Q ss_pred HHH-HHHHHHHHHHHcCCC
Q 017943 326 RRE-MFQLAKSAVKFIFAN 343 (363)
Q Consensus 326 ~~~-l~~l~~na~~~sf~~ 343 (363)
..+ +..++.|+.+...++
T Consensus 353 ~~~~l~~~T~~~A~~lg~~ 371 (451)
T PRK08203 353 AREALEWATLGGARVLGRD 371 (451)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 888 455679999988764
No 43
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=99.77 E-value=2.2e-17 Score=162.48 Aligned_cols=237 Identities=17% Similarity=0.133 Sum_probs=157.1
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccc
Q 017943 68 TTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMN 147 (363)
Q Consensus 68 ~~~~e~~~~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (363)
..++++++..+...+.++.+.||.+++.++++... .+. ..++++.+..+++..
T Consensus 88 ~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~--~~~---~~~~~~~~~~~~~~~---------------------- 140 (398)
T cd01293 88 LLTAEDVKERAERALELAIAHGTTAIRTHVDVDPA--AGL---KALEALLELREEWAD---------------------- 140 (398)
T ss_pred ccChHHHHHHHHHHHHHHHHcChhheeeeeccccc--ccc---hHHHHHHHHHHHhhc----------------------
Confidence 45799999999999999999999999887764421 111 123444443333210
Q ss_pred ccccCCCCCCcEEEEEEEeeCC--CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeec
Q 017943 148 DACNGTRGKKIYVRLLLSIDRR--ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 225 (363)
Q Consensus 148 ~~~~~~~~~gi~~~li~~~~r~--~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~Ha 225 (363)
.+... +.++.+. ...+.+.+.++.+.+.....+.|++..+ ....+++.+.++++.|+++|+++++|+
T Consensus 141 ---------~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~-~~~~s~e~l~~~~~~A~~~g~~v~~H~ 209 (398)
T cd01293 141 ---------LIDLQ-IVAFPQHGLLSTPGGEELMREALKMGADVVGGIPPAE-IDEDGEESLDTLFELAQEHGLDIDLHL 209 (398)
T ss_pred ---------cceEE-EEeccCccccCCCCHHHHHHHHHHhCCCEEeCCCCCc-CCccHHHHHHHHHHHHHHhCCCCEEEe
Confidence 01111 1111111 1114556677777664332222333332 234567899999999999999999999
Q ss_pred CCCCCh--hhHH----HHHhcCC---CeeeEecccCH-------HHHHHHhcCCCcEEEcccccccccccc-----CCCC
Q 017943 226 GEIPNK--EEIQ----SMLDFLP---QRIGHACCFEE-------EEWRKLKSSKIPVEICLTSNIRTETIS-----SLDI 284 (363)
Q Consensus 226 gE~~~~--~~i~----~~l~~g~---~rigHg~~~~~-------~~~~~l~~~~i~ve~cPtSN~~l~~~~-----~~~~ 284 (363)
+|..++ ..+. .+.+.|. ..++||+++++ +++++|+++|+.+++||+||..++... ....
T Consensus 210 ~e~~~~~~~~~~~~~~~~~~~g~~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~~p~s~~~l~~~~~~~~~~~~~ 289 (398)
T cd01293 210 DETDDPGSRTLEELAEEAERRGMQGRVTCSHATALGSLPEAEVSRLADLLAEAGISVVSLPPINLYLQGREDTTPKRRGV 289 (398)
T ss_pred CCCCCcchhHHHHHHHHHHHhCCCCCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEEeCCCcchhhcccccCCCCCCCC
Confidence 987653 1222 2223453 46899998752 569999999999999999998773221 1245
Q ss_pred ccHHHHHHcCCCEEecCCCCC----cc-CCChHHHHHHHHHHCCCCH----HH-HHHHHHHHHHHcCC
Q 017943 285 HHFVDLYKAQHPLVLCTDDSG----VF-STSVSREYDLAASAFSLGR----RE-MFQLAKSAVKFIFA 342 (363)
Q Consensus 285 ~pi~~l~~~Gv~v~l~TDd~~----~~-~~~l~~E~~~~~~~~~l~~----~~-l~~l~~na~~~sf~ 342 (363)
.|+++|+++||+|++|||+++ .+ ..++.++++.++...+++. .+ +...+.|++++..+
T Consensus 290 ~~~~~~~~~Gv~v~lGTD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lg~ 357 (398)
T cd01293 290 TPVKELRAAGVNVALGSDNVRDPWYPFGSGDMLEVANLAAHIAQLGTPEDLALALDLITGNAARALGL 357 (398)
T ss_pred CcHHHHHHCCCeEEECCCCCCCCCcCCCCCCHHHHHHHHHHHHcCCChhhHHHHHHhcChhhhhhcCC
Confidence 899999999999999999842 22 3689999998877677743 34 45566899888875
No 44
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=99.77 E-value=1.3e-16 Score=147.37 Aligned_cols=235 Identities=21% Similarity=0.254 Sum_probs=167.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccc
Q 017943 67 LTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNM 146 (363)
Q Consensus 67 ~~~~~e~~~~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (363)
-..++++++......++++.+.||.++..+.++.... .. .+.++.+.++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~---~~-~~~~~~~~~~~~~~----------------------- 78 (275)
T cd01292 26 EELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPT---TT-KAAIEAVAEAARAS----------------------- 78 (275)
T ss_pred cccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCcc---cc-chHHHHHHHHHHHh-----------------------
Confidence 3457899999999999999999999998877644311 11 22345555544331
Q ss_pred cccccCCCCCCcEEEEEEEeeCCCCH--H-HHHHHHHHHHhhCCCceEEEecCCCCCCC--ChhhHHHHHHHHHHcCCce
Q 017943 147 NDACNGTRGKKIYVRLLLSIDRRETT--E-AAMETVKLALEMRDLGVVGIDLSGNPTKG--EWTTFLPALKFAREQGLQI 221 (363)
Q Consensus 147 ~~~~~~~~~~gi~~~li~~~~r~~~~--e-~~~~~~~~a~~~~~~~vvGidl~g~e~~~--~~~~~~~~~~~A~~~gl~~ 221 (363)
.|+++.++.++.+.... + ......+...+....+++|+++.+..... +.+.+.++++.|+++|+++
T Consensus 79 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i 149 (275)
T cd01292 79 ---------AGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGLKLAGPYTATGLSDESLRRVLEEARKLGLPV 149 (275)
T ss_pred ---------cCeeeEEeccCCCCccccchhHHHHHHHHHHHHHhcCCeeEeeCCCCCCCCCCcHHHHHHHHHHHHcCCeE
Confidence 16666666666554321 1 11122222222222368899988765432 6789999999999999999
Q ss_pred eeecCCCCCh-hhHHHHHhc----CCCeeeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCC
Q 017943 222 TLHCGEIPNK-EEIQSMLDF----LPQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP 296 (363)
Q Consensus 222 ~~HagE~~~~-~~i~~~l~~----g~~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~ 296 (363)
++|+++...+ ..+..+++. +...++|+...+++.++.++++|+.+++||.+|..++ .......|++++++.|++
T Consensus 150 ~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~ 228 (275)
T cd01292 150 VIHAGELPDPTRALEDLVALLRLGGRVVIGHVSHLDPELLELLKEAGVSLEVCPLSNYLLG-RDGEGAEALRRLLELGIR 228 (275)
T ss_pred EEeeCCcccCccCHHHHHHHHhcCCCEEEECCccCCHHHHHHHHHcCCeEEECCccccccc-CCcCCcccHHHHHHCCCc
Confidence 9999987642 223444432 3567999999999999999999999999999998763 111246899999999999
Q ss_pred EEecCCCCCc-cCCChHHHHHHHHHHCC--CCHHHHHHH-HHHHHH
Q 017943 297 LVLCTDDSGV-FSTSVSREYDLAASAFS--LGRREMFQL-AKSAVK 338 (363)
Q Consensus 297 v~l~TDd~~~-~~~~l~~E~~~~~~~~~--l~~~~l~~l-~~na~~ 338 (363)
+++|||.+.. ...++..+++.+....+ ++..++.++ +.|+++
T Consensus 229 ~~lgTD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~n~a~ 274 (275)
T cd01292 229 VTLGTDGPPHPLGTDLLALLRLLLKVLRLGLSLEEALRLATINPAR 274 (275)
T ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHhccccC
Confidence 9999999887 45899999999877554 699997766 777764
No 45
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=99.75 E-value=2.7e-16 Score=156.74 Aligned_cols=241 Identities=18% Similarity=0.119 Sum_probs=160.8
Q ss_pred HHHHHHhhhH-HHhhcCCHHHHHHHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccc
Q 017943 54 LHEVFKLFDL-IHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFAS 132 (363)
Q Consensus 54 l~~f~~~f~~-~~~~~~~~e~~~~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~ 132 (363)
+.+++....+ ....+.++++++..+...+.++++.|+.. +++.+.... ....+..+++.+
T Consensus 80 l~~wl~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~t~--~~~~~~~~~-------~~~~~~~~a~~~---------- 140 (421)
T COG0402 80 LLEWLERYVWPREARLLTEEDLYARALLALLEMLRNGTTT--ARTHVDVVA-------ESADAAFEAALE---------- 140 (421)
T ss_pred hHHHHHHHHhHHHhhcCCHHHHHHHHHHHHHHHHhcCccc--cccccchhh-------hhHHHHHHHHHH----------
Confidence 3344444322 23334679999999999999999999998 355433211 112223334433
Q ss_pred cccccccccccccccccccCCCCCCcEEEEEEEeeCC-CC-------H--HHHHHHHHHHHhhCCCceEEEecCCCCCCC
Q 017943 133 RSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRR-ET-------T--EAAMETVKLALEMRDLGVVGIDLSGNPTKG 202 (363)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~~~r~-~~-------~--e~~~~~~~~a~~~~~~~vvGidl~g~e~~~ 202 (363)
.|+++.+...+... ++ + +.+.+.++.+.... ...+|+.... +..+
T Consensus 141 -----------------------~g~r~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~-~~~~ 195 (421)
T COG0402 141 -----------------------VGLRAVLGPVLQDVAFPDPGAETDEELEETEELLREAHGLG-RDVVGLAPHF-PYTV 195 (421)
T ss_pred -----------------------hCCeeEeeeccccCCCCcccccchHHHHHHHHHHHHHhcCC-CeeEEEecCC-CCCC
Confidence 33444333333221 11 1 11333333333221 1234444332 3457
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCChhh-HHH--------HHh-cC----CCeeeEecccCHHHHHHHhcCCCcEEE
Q 017943 203 EWTTFLPALKFAREQGLQITLHCGEIPNKEE-IQS--------MLD-FL----PQRIGHACCFEEEEWRKLKSSKIPVEI 268 (363)
Q Consensus 203 ~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~-i~~--------~l~-~g----~~rigHg~~~~~~~~~~l~~~~i~ve~ 268 (363)
+++.++.+.+.++++|+++++|++|+..+.. ..+ .++ .| ..-+.||++++++++++++++|+.+.+
T Consensus 196 ~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~~~~~~~~g~l~~~~~~~H~~~~~~~e~~~l~~~g~~v~~ 275 (421)
T COG0402 196 SPELLESLDELARKYGLPVHIHLAETLDEVERVLEPYGARPVERLDLLGLLGSHTLLAHCVHLSEEELELLAESGASVVH 275 (421)
T ss_pred CHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcCCCHHHHHHHcCCCCCCeEEEEeccCCHHHHHHHhhCCCeEEE
Confidence 8899999999999999999999999886521 111 111 22 234789999999999999999999999
Q ss_pred ccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccC-CChHHHHHHHHHHCCC------CHH---HHHHHHHHHHH
Q 017943 269 CLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASAFSL------GRR---EMFQLAKSAVK 338 (363)
Q Consensus 269 cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~-~~l~~E~~~~~~~~~l------~~~---~l~~l~~na~~ 338 (363)
||+||++++. +..|+++++++|+++++|||+.+..+ .|+++||..+.+.... +.. -+..++.|+++
T Consensus 276 cP~sN~~L~s----G~~p~~~~~~~gv~v~~gTD~~~~~~~~d~l~~~~~a~~l~~~~~~~~~~~~~~~~l~~aT~~gA~ 351 (421)
T COG0402 276 CPRSNLKLGS----GIAPVRRLLERGVNVALGTDGAASNNVLDMLREMRTADLLQKLAGGLLAAQLPGEALDMATLGGAK 351 (421)
T ss_pred CcchhccccC----CCCCHHHHHHcCCCEEEecCCccccChHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHHhhHHH
Confidence 9999999985 47899999999999999999999988 8999999998764211 111 26777899998
Q ss_pred HcCC
Q 017943 339 FIFA 342 (363)
Q Consensus 339 ~sf~ 342 (363)
+.-+
T Consensus 352 alg~ 355 (421)
T COG0402 352 ALGL 355 (421)
T ss_pred HcCC
Confidence 8764
No 46
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=99.75 E-value=6.3e-16 Score=155.13 Aligned_cols=142 Identities=16% Similarity=0.133 Sum_probs=111.3
Q ss_pred CCCCChhhHHHHHHHHHHcCCceeeecCCCCChh-hH---------HHHHhcC---C-CeeeEecccCHHHHHHHhcCCC
Q 017943 199 PTKGEWTTFLPALKFAREQGLQITLHCGEIPNKE-EI---------QSMLDFL---P-QRIGHACCFEEEEWRKLKSSKI 264 (363)
Q Consensus 199 e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~-~i---------~~~l~~g---~-~rigHg~~~~~~~~~~l~~~~i 264 (363)
+...+++.++.+++.|+++|+++++|++|..... .. ....++| + .++.||++++++++++++++|+
T Consensus 196 ~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~l~~r~~~~H~~~l~~~~~~~la~~g~ 275 (443)
T PRK09045 196 PYTVSDENLERIRTLAEQLDLPIHIHLHETAQEIADSLKQHGQRPLARLARLGLLGPRLIAVHMTQLTDAEIALLAETGC 275 (443)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHhCCCHHHHHHHcCCCCCCeEEEEecCCCHHHHHHHHHcCC
Confidence 4556789999999999999999999999865321 11 1111222 2 3478999999999999999999
Q ss_pred cEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccC-CChHHHHHHHHHH--------CCCCHHHHH-HHHH
Q 017943 265 PVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASA--------FSLGRREMF-QLAK 334 (363)
Q Consensus 265 ~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~-~~l~~E~~~~~~~--------~~l~~~~l~-~l~~ 334 (363)
.+.+||+||+.++. ...|+++++++|+++++|||++..++ .+++.|++.+... .+++.+++. .++.
T Consensus 276 ~i~~~P~~~~~~~~----~~~~~~~l~~~Gv~v~lGtD~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~al~~~T~ 351 (443)
T PRK09045 276 SVVHCPESNLKLAS----GFCPVAKLLQAGVNVALGTDGAASNNDLDLFGEMRTAALLAKAVAGDATALPAHTALRMATL 351 (443)
T ss_pred eEEECHHHHhhhcc----CCCcHHHHHHCCCeEEEecCCCCCCCCccHHHHHHHHHHHHhhccCCCCcCCHHHHHHHHhH
Confidence 99999999987652 45899999999999999999987655 7999999876431 247888855 5568
Q ss_pred HHHHHcCCCh
Q 017943 335 SAVKFIFANG 344 (363)
Q Consensus 335 na~~~sf~~~ 344 (363)
|+++..++++
T Consensus 352 ~~A~~lg~~~ 361 (443)
T PRK09045 352 NGARALGLDD 361 (443)
T ss_pred HHHHHcCCCC
Confidence 9999887653
No 47
>PRK14085 imidazolonepropionase; Provisional
Probab=99.73 E-value=9.8e-16 Score=150.89 Aligned_cols=147 Identities=13% Similarity=0.119 Sum_probs=117.7
Q ss_pred EecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEecccCHHHHHHHhcCCCcEEEcccc
Q 017943 193 IDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVEICLTS 272 (363)
Q Consensus 193 idl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~~~~~~~~l~~~~i~ve~cPtS 272 (363)
+++...+...+++.++.+++.|+++|+++++|+.+......+..++++|..+++||++++++++++++++|+.+++||.+
T Consensus 195 idi~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~v~~~~~~g~~~i~H~~~l~~~~~~~la~~gv~~~~~P~~ 274 (382)
T PRK14085 195 IDVFCERGAFDEDQSRRVLTAGRAAGLGLRVHGNQLGPGPGVRLAVELGAASVDHCTYLTDADVDALAGSGTVATLLPGA 274 (382)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEeCcccCChHHHHHHHcCCCcHHHhCCCCHHHHHHHHHcCCEEEECcHH
Confidence 44443333467889999999999999999999988654455777788899999999999999999999999999999999
Q ss_pred ccccccccCCCCccHHHHHHcCCCEEecCCCCCcc--CCChHHHHHHHHHHCCCCHHHHH-HHHHHHHHHcCCC
Q 017943 273 NIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVF--STSVSREYDLAASAFSLGRREMF-QLAKSAVKFIFAN 343 (363)
Q Consensus 273 N~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~--~~~l~~E~~~~~~~~~l~~~~l~-~l~~na~~~sf~~ 343 (363)
|+..+. ...|+++++++||+|++|||.+... +..+..++..+....+++..++. .++.|+.+...++
T Consensus 275 ~~~~~~----~~~~~~~l~~aGv~v~lgsD~~~~~~~~~~~~~~~~~~~~~~~l~~~~al~~aT~~~A~~lg~~ 344 (382)
T PRK14085 275 EFSTRQ----PYPDARRLLDAGVTVALASDCNPGSSYTSSMPFCVALAVRQMGMTPAEAVWAATAGGARALRRD 344 (382)
T ss_pred HHhcCC----CCchHHHHHHCCCcEEEEeCCCCCCChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 986652 3579999999999999999975322 23455555555556799999955 5678999988775
No 48
>PRK07572 cytosine deaminase; Validated
Probab=99.71 E-value=1.1e-15 Score=152.76 Aligned_cols=277 Identities=13% Similarity=0.120 Sum_probs=166.7
Q ss_pred CCc-chhccccCCCCCHHHHHHHHHHhccCCCCCccchHHHHhhcCCCHHHHHHhhhHHHhhcCCHHHHHHHHHHHHHHH
Q 017943 7 MPK-VELHAHLNGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDF 85 (363)
Q Consensus 7 lPK-~eLH~HL~Gsi~~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~f~~~~~~~~~~e~~~~~~~~~~~~~ 85 (363)
+|- +|+|+|++.++.... .. . ....++.+++..+..... ..++++++..+...++++
T Consensus 50 ~PG~id~h~h~~~~~~~~~----~~----~-------------~~~g~l~e~l~~~~~~~~-~~t~edl~~~a~~~~~e~ 107 (426)
T PRK07572 50 SPPFVDPHFHMDATLSYGL----PR----V-------------NASGTLLEGIALWGELKP-LLTQEALVERALRYCDWA 107 (426)
T ss_pred cccceehhhCcchhhccCC----CC----C-------------CCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 566 999999976542210 00 0 011345555554443333 347899999999999999
Q ss_pred HhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEEE
Q 017943 86 ASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLS 165 (363)
Q Consensus 86 ~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~ 165 (363)
.+.|+.++--.++.. ..++ ..++++.+ ++.. ....+. .+..+.++.|.
T Consensus 108 l~~G~Ttvrd~~d~~---~~~~---~~~~a~~~-~~~~---~~~~~~---------------~~~~a~~~~g~------- 155 (426)
T PRK07572 108 VARGLLAIRSHVDVC---DPRL---LAVEALLE-VRER---VAPYLD---------------LQLVAFPQDGV------- 155 (426)
T ss_pred HHcCcccEeeccccC---CCcc---cHHHHHHH-HHHH---hhccce---------------EEEEeccChhh-------
Confidence 999999886665421 0111 12333333 2211 111110 00011222221
Q ss_pred eeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCC--hhhHHHHHHHHHHcCCceeeecCCCCChhh--H----HHH
Q 017943 166 IDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGE--WTTFLPALKFAREQGLQITLHCGEIPNKEE--I----QSM 237 (363)
Q Consensus 166 ~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~--~~~~~~~~~~A~~~gl~~~~HagE~~~~~~--i----~~~ 237 (363)
.+. +...+.++.+++... .++|.. ...+...+ .+.++.+++.|+++|+++++|++|...+.. + ...
T Consensus 156 -~~~---~~~~~~~~~~l~~g~-d~iGg~-p~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~ 229 (426)
T PRK07572 156 -LRS---PGAVDNLERALDMGV-DVVGGI-PHFERTMADGAESVRLLCEIAAERGLRVDMHCDESDDPLSRHIETLAAET 229 (426)
T ss_pred -ccC---ccHHHHHHHHHHcCC-CEEeCC-CCCccccchHHHHHHHHHHHHHHcCCCeEEEECCCCChhHHHHHHHHHHH
Confidence 011 123345555555321 233311 11222222 378999999999999999999999775421 1 112
Q ss_pred HhcCCC-e--eeEecccCH-------HHHHHHhcCCCcEEEccccccccccccC-----CCCccHHHHHHcCCCEEecCC
Q 017943 238 LDFLPQ-R--IGHACCFEE-------EEWRKLKSSKIPVEICLTSNIRTETISS-----LDIHHFVDLYKAQHPLVLCTD 302 (363)
Q Consensus 238 l~~g~~-r--igHg~~~~~-------~~~~~l~~~~i~ve~cPtSN~~l~~~~~-----~~~~pi~~l~~~Gv~v~l~TD 302 (363)
.+.|.. + ++||+++++ +++++|+++|+.+++||+||+.++...+ .+..|+++|+++||+|++|||
T Consensus 230 ~~~G~~~~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv~~P~~n~~l~~~~~~~~~~~g~~~v~~l~~~GV~v~lGtD 309 (426)
T PRK07572 230 QRLGLQGRVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAIANPLINITLQGRHDTYPKRRGMTRVPELMAAGINVAFGHD 309 (426)
T ss_pred HHhCCCCCEEEEccchhhcCCHHHHHHHHHHHHHcCCeEEECchhhhhhcCCCCCCCCCCCCcCHHHHHHCCCcEEEecC
Confidence 234542 2 589987653 6799999999999999999998753211 245789999999999999999
Q ss_pred CCC----cc-CCChHHHHHHHHHHCCCCHHH-H----HHHHHHHHHHcCCC
Q 017943 303 DSG----VF-STSVSREYDLAASAFSLGRRE-M----FQLAKSAVKFIFAN 343 (363)
Q Consensus 303 d~~----~~-~~~l~~E~~~~~~~~~l~~~~-l----~~l~~na~~~sf~~ 343 (363)
++. .+ +.++.++++.+....+++..+ + ..++.|+.++.-++
T Consensus 310 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~~l~~aT~~~A~~lgl~ 360 (426)
T PRK07572 310 CVMDPWYSLGSGDMLEVAHMGLHVAQMTGQDAMRACFDAVTVNPARIMGLE 360 (426)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcchHHhhCCC
Confidence 852 23 378998888766666665443 2 35678888887664
No 49
>KOG1096 consensus Adenosine monophosphate deaminase [Nucleotide transport and metabolism]
Probab=99.70 E-value=2.8e-16 Score=156.60 Aligned_cols=309 Identities=21% Similarity=0.249 Sum_probs=202.3
Q ss_pred hhhCCcchhccccCCCCCHHHHHHHHHHh----------ccCCCCC-----c--------c-chHHHHh-----------
Q 017943 4 FASMPKVELHAHLNGSIRDSTLLELARVL----------GEKGVIV-----F--------S-DVEHVIM----------- 48 (363)
Q Consensus 4 ~~~lPK~eLH~HL~Gsi~~~~l~~la~~~----------~~~~~~~-----~--------~-~~~~~~~----------- 48 (363)
|.+.=|||+|+|+.||+.-.-|+++.++- .+.|-.+ | + ++..+..
T Consensus 314 FYNvRKVDthih~SaCmnQkhLlrFIk~klr~epdrvV~~~~g~~lTLrevF~~l~L~~yDlsvd~ldvha~~~tfHrfd 393 (768)
T KOG1096|consen 314 FYNVRKVDTHIHASACMNQKHLLRFIKKKLRKEPDRVVIQRDGRKLTLREVFKSLGLTAYDLSVDTLDVHADRNTFHRFD 393 (768)
T ss_pred ccccchhcchhhHhhhcCHHHHHHHHHHHhhcCCceEEEecCCceeeHHHHHHHcCCceeccchhHHHhhhchhhhhccc
Confidence 34677999999999999999999887641 0111110 0 0 1111110
Q ss_pred -----hcCCCHHHHHHhhhHHHhhcCCHHHHHHHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhh
Q 017943 49 -----KSDRSLHEVFKLFDLIHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAV 123 (363)
Q Consensus 49 -----~~~~~l~~f~~~f~~~~~~~~~~e~~~~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~ 123 (363)
..+-+-.+.-+.|-.+...++ -+-+.+++++++.++....-+++|.|.+.+ |.+.+++-.- ..=+-..
T Consensus 394 kfn~Kynp~g~s~LR~iFLktDNyI~-GeYlAei~Kev~~dleeSKYQ~ae~rlsiy-----grs~~EW~kl-A~W~v~~ 466 (768)
T KOG1096|consen 394 KFNAKYNPVGESRLREIFLKTDNYIN-GEYLAEILKEVLSDLEESKYQLAEPRLSIY-----GRSRDEWDKL-ASWLVDN 466 (768)
T ss_pred hhhhhcCCccHHHHHHHHHhhccccc-hhhHHHHHHHHHhhHHHhhhhhcceeEEEe-----eeCHHHHHHH-HHHHHHc
Confidence 011122222233433334443 356789999999999999999999999954 5666664321 1111110
Q ss_pred hhccccccccccccccccccccccccccCCCCCCcEEEEEEEeeCCCCHH-------HHHHHHHHHHh-h------CC--
Q 017943 124 SAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTE-------AAMETVKLALE-M------RD-- 187 (363)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~~~r~~~~e-------~~~~~~~~a~~-~------~~-- 187 (363)
.-..-.+||++.+.|-.+.- .-.++++.... + ..
T Consensus 467 ------------------------------~v~S~NvRWlIQipRiydvy~~~g~v~nFqe~L~nIF~PLFeat~~p~~h 516 (768)
T KOG1096|consen 467 ------------------------------KVFSPNVRWLIQIPRLYDVYRKKGIVKNFQEMLDNIFLPLFEATKDPSSH 516 (768)
T ss_pred ------------------------------cccCCCeeEEEecchHhHHHHhcCchhhHHHHHHHHhhhhhhcccCCCcc
Confidence 11122578888888865532 22344444331 1 01
Q ss_pred -------CceEEEecCCCCCCCC----------hhh----------------HH---HHHHHHHHcC---CceeeecCCC
Q 017943 188 -------LGVVGIDLSGNPTKGE----------WTT----------------FL---PALKFAREQG---LQITLHCGEI 228 (363)
Q Consensus 188 -------~~vvGidl~g~e~~~~----------~~~----------------~~---~~~~~A~~~g---l~~~~HagE~ 228 (363)
+.|+|||++.+|.... |.. ++ .+=..-++.| +-+.-||||.
T Consensus 517 p~Lh~FL~~V~gfDsVdDesk~~~~~Ft~~sp~P~~Wt~~~NPpysyYlYY~YaNl~~LN~lR~~rg~nTf~LRphCgea 596 (768)
T KOG1096|consen 517 PELHVFLQQVSGFDSVDDESKYEWKNFTRKSPKPKEWTAEDNPPYSYYLYYMYANLAKLNHLRRARGQNTFTLRPHCGEA 596 (768)
T ss_pred hHHHHHHHHhcCcccccccccccccccccCCCCchhccccCCCchhhhHHHHHHHHHHHHHHHHHcCCceEEecCCCCCc
Confidence 1589999987665422 111 01 1111223445 4567799999
Q ss_pred CChhhHHHHHhcCCCeeeEecccC-HHHHHHH-hcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCc
Q 017943 229 PNKEEIQSMLDFLPQRIGHACCFE-EEEWRKL-KSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGV 306 (363)
Q Consensus 229 ~~~~~i~~~l~~g~~rigHg~~~~-~~~~~~l-~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~ 306 (363)
+..+.+..+.. -++-|.||+.+. .-.+++| -=.+|++.+.|.||..+. -++...|+.+++++|++|+|+||||..
T Consensus 597 g~~~hLvsafL-la~gIshg~Llrk~PvLQYLyYL~QIpIamSPLSnnslf--l~Y~kNPf~~~f~~GL~VSLSTddpLq 673 (768)
T KOG1096|consen 597 GDIEHLVSAFL-LAHGISHGILLRKVPVLQYLYYLAQIPIAMSPLSNNSLF--LSYHKNPFPEYFKRGLNVSLSTDDPLQ 673 (768)
T ss_pred CCHHHHHHHHH-HhccccchhhhccchHHHHHHHHHhcchhhccccccccc--cccccCchHHHHHhhceeeeccCCchh
Confidence 98766655432 234499998763 2234433 457899999999998654 346789999999999999999999998
Q ss_pred cC---CChHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 017943 307 FS---TSVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKE 352 (363)
Q Consensus 307 ~~---~~l~~E~~~~~~~~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~ 352 (363)
|. -.|.+||..|+..+.++.-|+-.+++||+-.|..+.+.|..|+.
T Consensus 674 f~yTkEPLiEEYSIAAqiykLss~DmCELaRNSVlqSGfs~~~K~hWlG 722 (768)
T KOG1096|consen 674 FHYTKEPLIEEYSIAAQVYKLSSCDMCELARNSVLQSGFSHQLKSHWLG 722 (768)
T ss_pred hhcccchHHHHHHHHHHHHhcccccHHHHHhhhhhhhcchHHhhhhhcc
Confidence 87 48999999999999999999999999999999999999999874
No 50
>PRK07583 cytosine deaminase-like protein; Validated
Probab=99.69 E-value=5.2e-15 Score=148.31 Aligned_cols=235 Identities=13% Similarity=0.124 Sum_probs=148.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccccc
Q 017943 70 DHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDA 149 (363)
Q Consensus 70 ~~e~~~~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (363)
+.+++.+.+...++.++..|+.+++...+.... ..+. .++.+.+..++.. +.+.
T Consensus 116 ~~~~~~~r~~~~~~~a~~~Gtt~vRt~vd~~~~-~~~~----~~~~i~~~~~~~~----~~~~----------------- 169 (438)
T PRK07583 116 SAEDLYRRMEFGLRCAYAHGTSAIRTHLDSFAP-QAAI----SWEVFAELREAWA----GRIA----------------- 169 (438)
T ss_pred CHHHHHHHHHHHHHHHHHhChhhEEeeeccCCC-Cccc----HHHHHHHHHHHhh----ccCe-----------------
Confidence 367788888999999999999999888774211 0121 2444444444331 1110
Q ss_pred ccCCCCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCC
Q 017943 150 CNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIP 229 (363)
Q Consensus 150 ~~~~~~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~ 229 (363)
+.+.-.+...-. ..++..++.+.+.+. .+++|+-.. ... ...+.+.++|+.|+++|+++.+|++|..
T Consensus 170 --------~~~v~~~p~~~~-~~~~~~eL~~~v~~~--~gv~g~~~~-~~~-~~d~~l~~i~~lA~~~G~~v~vH~~E~~ 236 (438)
T PRK07583 170 --------LQAVSLVPLDAY-LTDAGERLADLVAEA--GGLLGGVTY-MNP-DLDAQLDRLFRLARERGLDLDLHVDETG 236 (438)
T ss_pred --------EEEEEecChhhc-cCchHHHHHHHHHHc--CCEEeCCCC-CCC-CHHHHHHHHHHHHHHhCCCcEEeECCCC
Confidence 000000000000 011223444333333 246663211 111 2346799999999999999999999977
Q ss_pred Chhh--HH----HHHhcC---CCeeeEecccC-------HHHHHHHhcCCCcEEEccccccccccccC------CCCccH
Q 017943 230 NKEE--IQ----SMLDFL---PQRIGHACCFE-------EEEWRKLKSSKIPVEICLTSNIRTETISS------LDIHHF 287 (363)
Q Consensus 230 ~~~~--i~----~~l~~g---~~rigHg~~~~-------~~~~~~l~~~~i~ve~cPtSN~~l~~~~~------~~~~pi 287 (363)
.+.. +. .+.+.| ..+++||+.++ ++++++|+++|+.+++||++|+.+..... ....|+
T Consensus 237 ~~~~~~l~~~~~~~~~~G~~~~v~i~H~~~l~~~~~~~~~~~i~~la~~gv~vv~~P~~~~~l~~~~~~~~p~~~~~~~v 316 (438)
T PRK07583 237 DPASRTLKAVAEAALRNGFEGKVTCGHCCSLAVQPEEQAQATIALVAEAGIAIVSLPMCNLYLQDRQPGRTPRWRGVTLV 316 (438)
T ss_pred CchHHHHHHHHHHHHHhCCCCCEEEEeccchhcCCHHHHHHHHHHHHHcCCeEEECcchhhhhcCCCcCCCCCCCCcchH
Confidence 5522 21 222333 45799999875 47899999999999999999987753211 134789
Q ss_pred HHHHHcCCCEEecCCCCC----ccC-CChHHHHHHHHHHC--CCCHHHH-HHHHHHHHHHcCCC
Q 017943 288 VDLYKAQHPLVLCTDDSG----VFS-TSVSREYDLAASAF--SLGRREM-FQLAKSAVKFIFAN 343 (363)
Q Consensus 288 ~~l~~~Gv~v~l~TDd~~----~~~-~~l~~E~~~~~~~~--~l~~~~l-~~l~~na~~~sf~~ 343 (363)
++|+++||+|++|||+.. .++ .++.+.+..+.... +.+..++ ..++.|+++...++
T Consensus 317 ~~l~~aGV~valGtD~~~d~~~p~g~~~~~~~~~~a~~~~~~~~~~~~al~~~T~~~A~~lg~~ 380 (438)
T PRK07583 317 HELKAAGIPVAVASDNCRDPFYAYGDHDMLEVFREAVRILHLDHPYDDWPAAVTTTPADIMGLP 380 (438)
T ss_pred HHHHHCCCeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHhcCCcHHHHHHHHhHHHHHHcCCC
Confidence 999999999999999842 123 68888888776543 5677774 45678998887765
No 51
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=99.66 E-value=4.6e-14 Score=141.67 Aligned_cols=141 Identities=19% Similarity=0.182 Sum_probs=109.6
Q ss_pred CCCChhhHHHHHHHHHHcCCceeeecCCCCChh-hHHH--------HH-hc---C-CCeeeEecccCHHHHHHHhcCCCc
Q 017943 200 TKGEWTTFLPALKFAREQGLQITLHCGEIPNKE-EIQS--------ML-DF---L-PQRIGHACCFEEEEWRKLKSSKIP 265 (363)
Q Consensus 200 ~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~-~i~~--------~l-~~---g-~~rigHg~~~~~~~~~~l~~~~i~ 265 (363)
...+++.+..+++.|+++|+++++|+.|....- .+.. .+ .+ + ..++.||++++++.++++++.|+.
T Consensus 194 ~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~l~~~g~~~~~~~l~H~~~~~~~~~~~~~~~g~~ 273 (445)
T PRK07228 194 VSCTEELLRGVRDLADEYGVRIHTHASENRGEIETVEEETGMRNIHYLDEVGLTGEDLILAHCVWLDEEEREILAETGTH 273 (445)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCHHHHHHHCCCCCCCcEEEEEecCCHHHHHHHHHcCCe
Confidence 346788999999999999999999998865321 1111 11 12 2 246899999999999999999999
Q ss_pred EEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccC-CChHHHHHHHHHH--------CCCCHHHHH-HHHHH
Q 017943 266 VEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASA--------FSLGRREMF-QLAKS 335 (363)
Q Consensus 266 ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~-~~l~~E~~~~~~~--------~~l~~~~l~-~l~~n 335 (363)
+++||+||+.++. +..|+++++++|+++++|||.+...+ .+++.+++.+... -.++..++. .++.|
T Consensus 274 v~~~P~~~~~~~~----~~~p~~~~~~~Gv~v~lGtD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~al~~~T~~ 349 (445)
T PRK07228 274 VTHCPSSNLKLAS----GIAPVPDLLERGINVALGADGAPCNNTLDPFTEMRQAALIQKVDRLGPTAMPARTVFEMATLG 349 (445)
T ss_pred EEEChHHhhhccc----ccCcHHHHHHCCCeEEEcCCCCccCCCccHHHHHHHHHHHhhhccCCCcccCHHHHHHHHHHH
Confidence 9999999997752 45799999999999999999876544 6899998876432 147888855 55689
Q ss_pred HHHHcCCCh
Q 017943 336 AVKFIFANG 344 (363)
Q Consensus 336 a~~~sf~~~ 344 (363)
+++...+++
T Consensus 350 ~A~~lg~~~ 358 (445)
T PRK07228 350 GAKAAGFED 358 (445)
T ss_pred HHHHhCCCC
Confidence 999887643
No 52
>KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.63 E-value=1.2e-14 Score=139.01 Aligned_cols=237 Identities=18% Similarity=0.159 Sum_probs=153.8
Q ss_pred HHHHHHhhhH-HHhhcCCHHHHHHHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccc
Q 017943 54 LHEVFKLFDL-IHVLTTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFAS 132 (363)
Q Consensus 54 l~~f~~~f~~-~~~~~~~~e~~~~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~ 132 (363)
+.+++..+.+ +..-++..++.+++...+++++.+.|+.-+|-.-+.. .+. -..++++..+
T Consensus 97 ll~wl~~~~f~le~~~~~~e~~~q~~~~vv~~mL~~GTTt~~~f~~~~--------~~s-~~ll~~~~~~---------- 157 (439)
T KOG3968|consen 97 LLQWLGKYTFPLEATFTNEEDARQVYQRVVKEMLRAGTTTVEYFSTLH--------LDS-ELLLARAAIR---------- 157 (439)
T ss_pred HHHHhhcceeecchhhhhHHHHHHHHHHHHHHHHHcCceehhhhhccC--------chh-HHHHHHHHHH----------
Confidence 4445554432 3344455899999999999999999998887655322 111 1122222222
Q ss_pred cccccccccccccccccccCCCCCCcEEEEEEE-eeCC--CC---HHHHHHHHHHHH-------hhCCCc-----eEEEe
Q 017943 133 RSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLS-IDRR--ET---TEAAMETVKLAL-------EMRDLG-----VVGID 194 (363)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~-~~r~--~~---~e~~~~~~~~a~-------~~~~~~-----vvGid 194 (363)
.|+++-+--+ +++. .+ .+..++.++... +.+.++ ..+|+
T Consensus 158 -----------------------~G~R~~igkv~m~~~~~~~p~~~~~~E~si~~t~~~i~~~~~~~~~~~~~~vt~~fa 214 (439)
T KOG3968|consen 158 -----------------------AGQRALIGKVCMDCNAHAVPKGVETTEESIESTEDLIPKLEKLKREKVNPIVTPRFA 214 (439)
T ss_pred -----------------------hCCceeeeeehhccCCCCCCccchhHHHHHHHHHHHHHHHHhhccCCCCCccccccc
Confidence 2333332222 2222 11 122233332222 222222 22344
Q ss_pred cCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChh-hH----------HHHHh----cCC-CeeeEecccCHHHHHH
Q 017943 195 LSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKE-EI----------QSMLD----FLP-QRIGHACCFEEEEWRK 258 (363)
Q Consensus 195 l~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~-~i----------~~~l~----~g~-~rigHg~~~~~~~~~~ 258 (363)
+. ++...+....++|+.++++++.|..|...+- .+ .++.+ +++ .-+.|+++++++.++.
T Consensus 215 ~~-----c~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff~~~~~y~~~yd~~~lL~~ktvlaH~~hl~d~ei~~ 289 (439)
T KOG3968|consen 215 AS-----CSKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFFPEKLSYTDVYDKGGLLTEKTVLAHLEHLSDEEIEL 289 (439)
T ss_pred CC-----CcchhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHhhhhcccchHHHHHhcccchHhHhhhheecCchhHHH
Confidence 33 3446677777889999999999998876331 11 12222 343 4579999999999999
Q ss_pred HhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCChHHHHHHHHH----------HCCCCHHH
Q 017943 259 LKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAAS----------AFSLGRRE 328 (363)
Q Consensus 259 l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~----------~~~l~~~~ 328 (363)
|+++|..+.+||+||..++. +.+|+++|++.||.|+||||-.+ .++..+|+.+.. ..+++.++
T Consensus 290 l~k~g~svshCP~Sn~~L~s----G~~~vr~lL~~~v~VgLGtDv~~---~s~l~a~r~A~~~s~hL~~~~~~~~Ls~~e 362 (439)
T KOG3968|consen 290 LAKRGCSVSHCPTSNSILGS----GIPRVRELLDIGVIVGLGTDVSG---CSILNALRQAMPMSMHLACVLDVMKLSMEE 362 (439)
T ss_pred HHhcCCceEECCcchhhhcc----CCccHHHHHhcCceEeecCCccc---cccHHHHHHHHHHHHHHHhccCcccCCHHH
Confidence 99999999999999999984 67899999999999999999765 666777766653 15789999
Q ss_pred HHHH-HHHHHHHcCCCh
Q 017943 329 MFQL-AKSAVKFIFANG 344 (363)
Q Consensus 329 l~~l-~~na~~~sf~~~ 344 (363)
+..+ +.||+++.-.++
T Consensus 363 ~L~lATi~GA~aLg~d~ 379 (439)
T KOG3968|consen 363 ALYLATIGGAKALGRDD 379 (439)
T ss_pred HHHHHhccchhhccCCC
Confidence 5554 699999987766
No 53
>PRK05985 cytosine deaminase; Provisional
Probab=99.58 E-value=3.9e-13 Score=132.78 Aligned_cols=232 Identities=11% Similarity=0.096 Sum_probs=146.0
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccc
Q 017943 68 TTDHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMN 147 (363)
Q Consensus 68 ~~~~e~~~~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (363)
..+.++++..+...+.++.+.|+.++.-+++.. ...++. .++++.++.+..+. .++
T Consensus 90 ~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~~~~--~~~~~~---~~~~~~~~~~~~~~----~~~--------------- 145 (391)
T PRK05985 90 AASGHPAAERALALARAAAAAGTTAMRSHVDVD--PDAGLR---HLEAVLAARETLRG----LID--------------- 145 (391)
T ss_pred ccchhHHHHHHHHHHHHHHhcCcceEEeeEccC--CCcccc---hHHHHHHHHHHhhC----ccc---------------
Confidence 346778999999999999999999997766522 111221 24455555443321 000
Q ss_pred ccccCCCCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCC
Q 017943 148 DACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE 227 (363)
Q Consensus 148 ~~~~~~~~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE 227 (363)
.+..+.++.|.. .+ ....+.++.+++.....+.|++.. .....+.+.+..+++.|+++|+++++|+.|
T Consensus 146 ~~~v~~~~~g~~-------~~----~~~~~ll~~~l~~g~~~~gg~~p~-~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e 213 (391)
T PRK05985 146 IQIVAFPQSGVL-------SR----PGTAELLDAALRAGADVVGGLDPA-GIDGDPEGQLDIVFGLAERHGVGIDIHLHE 213 (391)
T ss_pred EEEEeccCcccc-------CC----cCHHHHHHHHHHcCCCEEeCCCCC-CcCCCHHHHHHHHHHHHHHhCCCcEEeeCC
Confidence 000111222210 11 123456676666543222223222 223355688999999999999999999999
Q ss_pred CCChh--hHHHH----HhcCC---CeeeEeccc---CH----HHHHHHhcCCCcEEEccccccccccccCCCCccHHHHH
Q 017943 228 IPNKE--EIQSM----LDFLP---QRIGHACCF---EE----EEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLY 291 (363)
Q Consensus 228 ~~~~~--~i~~~----l~~g~---~rigHg~~~---~~----~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~ 291 (363)
..+.. .+..+ ...|. ..++|+..+ ++ +++++++++|+.+.+||.+. .+..|+++|+
T Consensus 214 ~~d~~~~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~~~~~~--------~~~~~~~~l~ 285 (391)
T PRK05985 214 PGELGAFQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMTNAPGS--------VPVPPVAALR 285 (391)
T ss_pred CCCccHHHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEEeCCCC--------CCCCCHHHHH
Confidence 87542 22222 23453 468999865 33 56899999999999996542 1457999999
Q ss_pred HcCCCEEecCCCCC----ccC-CChHHHHHHHHHHCCCCH----HH-HHHHHHHHHHHcCCC
Q 017943 292 KAQHPLVLCTDDSG----VFS-TSVSREYDLAASAFSLGR----RE-MFQLAKSAVKFIFAN 343 (363)
Q Consensus 292 ~~Gv~v~l~TDd~~----~~~-~~l~~E~~~~~~~~~l~~----~~-l~~l~~na~~~sf~~ 343 (363)
++|++|++|||++. .++ .++..+++.++...++.. .+ +...+.|++++..++
T Consensus 286 ~~Gv~v~lGtD~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~ 347 (391)
T PRK05985 286 AAGVTVFGGNDGIRDTWWPYGNGDMLERAMLIGYRSGFRTDDELAAALDCVTHGGARALGLE 347 (391)
T ss_pred HCCCeEEEecCCCCCCCcCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHcchhHHHhCCc
Confidence 99999999999863 223 688888887665555532 34 445567998888764
No 54
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=99.56 E-value=6.2e-13 Score=135.10 Aligned_cols=139 Identities=15% Similarity=0.155 Sum_probs=107.4
Q ss_pred CCCCCChhhHHHHHHHHHHcCCceeeecCCCCChh-hHH--------H-HHhcC---C-CeeeEecccCH---------H
Q 017943 198 NPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKE-EIQ--------S-MLDFL---P-QRIGHACCFEE---------E 254 (363)
Q Consensus 198 ~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~-~i~--------~-~l~~g---~-~rigHg~~~~~---------~ 254 (363)
.+...+++.+..+++.|+++|+++++|+.|..... .+. + ..+.| + .++.||+++++ +
T Consensus 214 ~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~g~l~~r~~l~H~~~l~~~~~~~~~~~~ 293 (488)
T PRK06151 214 RIETCTVDLLRRTAAAARELGCPVRLHCAQGVLEVETVRRLHGTTPLEWLADVGLLGPRLLIPHATYISGSPRLNYSGGD 293 (488)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCcEEEEECCchHHHHHHHHHcCCCHHHHHHHcCCCCCCcEEEEEEEcCCccccccCCHH
Confidence 34457889999999999999999999998864321 111 1 11233 2 46899999998 9
Q ss_pred HHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCChHHHHHHHHHH--------CCCCH
Q 017943 255 EWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASA--------FSLGR 326 (363)
Q Consensus 255 ~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~--------~~l~~ 326 (363)
++++|+++|+.+.+||++|..++. ...|+++|+++|++|++|||+. ..+++.+++.+... ..++.
T Consensus 294 ~~~~la~~g~~v~~~P~~~~~~g~----~~~p~~~l~~~Gv~v~lGtD~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (488)
T PRK06151 294 DLALLAEHGVSIVHCPLVSARHGS----ALNSFDRYREAGINLALGTDTF---PPDMVMNMRVGLILGRVVEGDLDAASA 366 (488)
T ss_pred HHHHHHhcCCEEEECchhhhhhcc----ccccHHHHHHCCCcEEEECCCC---CccHHHHHHHHHHHHHHhcCCCCCCCH
Confidence 999999999999999999987763 4689999999999999999972 35888888776532 12577
Q ss_pred HH-HHHHHHHHHHHcCCC
Q 017943 327 RE-MFQLAKSAVKFIFAN 343 (363)
Q Consensus 327 ~~-l~~l~~na~~~sf~~ 343 (363)
.+ +..++.|+.+...++
T Consensus 367 ~~al~~aT~~~A~~lg~~ 384 (488)
T PRK06151 367 ADLFDAATLGGARALGRD 384 (488)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 77 456679999888764
No 55
>PRK06846 putative deaminase; Validated
Probab=99.49 E-value=6.9e-12 Score=124.75 Aligned_cols=210 Identities=13% Similarity=0.143 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccccccc
Q 017943 72 ATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACN 151 (363)
Q Consensus 72 e~~~~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (363)
++..+.+..+++.+.+.|+.++-.+++.. ...+++. ++++.+.+++.+.
T Consensus 110 ~~~~~~a~~~l~~~~~~Gtt~~r~~v~~~--~~~~~~~---~~a~~e~l~e~~~-------------------------- 158 (410)
T PRK06846 110 PTTQERAEKLIELLQSKGATHIRSHCNID--PVIGLKN---LENLQAALERYKD-------------------------- 158 (410)
T ss_pred HHHHHHHHHHHHHHHhCCccEEEEEEeeC--cccccch---HHHHHHHHHHhhC--------------------------
Confidence 45556666889999999999986666521 1222221 4455555554321
Q ss_pred CCCCCCcEEEEEEEeeCCC-CHHHHHHHHHHHHhhCCCceEEEecCC-CCCCCChhhHHHHHHHHHHcCCceeeecCCCC
Q 017943 152 GTRGKKIYVRLLLSIDRRE-TTEAAMETVKLALEMRDLGVVGIDLSG-NPTKGEWTTFLPALKFAREQGLQITLHCGEIP 229 (363)
Q Consensus 152 ~~~~~gi~~~li~~~~r~~-~~e~~~~~~~~a~~~~~~~vvGidl~g-~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~ 229 (363)
.+...+.. +.-+. ......+.++.+++.... ++| ++.. .....+++.+..+++.|+++|+++++|+.|..
T Consensus 159 -----~v~~~~~a-~~~~g~~~~~~~~lL~~al~~Ga~-~i~-gl~p~~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~ 230 (410)
T PRK06846 159 -----GFTYEIVA-FPQHGLLRSNSEPLMREAMKMGAH-LVG-GVDPASVDGAIEKSLDTMFQIAVDFNKGVDIHLHDTG 230 (410)
T ss_pred -----cceEEEEe-ccCcccCCccHHHHHHHHHHcCCC-EEe-CCCCccCCcCHHHHHHHHHHHHHHhCCCcEEEECCCC
Confidence 01111110 11100 002335667777766433 333 2211 12235568899999999999999999999877
Q ss_pred Chh--hHHHH----HhcC---CCeeeEeccc---CHHH----HHHHhcCCCcEEEccccccccccccCCCCccHHHHHHc
Q 017943 230 NKE--EIQSM----LDFL---PQRIGHACCF---EEEE----WRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKA 293 (363)
Q Consensus 230 ~~~--~i~~~----l~~g---~~rigHg~~~---~~~~----~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~ 293 (363)
.+. .+... .+.| ..-++||+.+ +++. +++++++|+.+.+|+. ++ .+..|+++|+++
T Consensus 231 ~~~~~~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~e~~~li~~la~~g~~v~~~~~----~~----~g~~p~~~l~~~ 302 (410)
T PRK06846 231 PLGVATIKYLVETTEEAQWKGKVTISHAFALGDLNEEEVEELAERLAAQGISITSTVP----IG----RLHMPIPLLHDK 302 (410)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCEEEEecchhhcCCHHHHHHHHHHHHHcCCeEEEeCC----CC----CCCCCHHHHHhC
Confidence 542 12211 1233 2347899875 5544 5689999999987643 22 145899999999
Q ss_pred CCCEEecCCCCC----ccC-CChHHHHHHHHHHCCCCHHH
Q 017943 294 QHPLVLCTDDSG----VFS-TSVSREYDLAASAFSLGRRE 328 (363)
Q Consensus 294 Gv~v~l~TDd~~----~~~-~~l~~E~~~~~~~~~l~~~~ 328 (363)
|++|++|||++. .++ .||++|+..++...+++..+
T Consensus 303 Gv~v~lGtD~~~~~~~p~~~~d~~~~~~~~~~~~~~~~~~ 342 (410)
T PRK06846 303 GVKVSLGTDSVIDHWSPFGTGDMLEKANLLAELYRWSDER 342 (410)
T ss_pred CCeEEEecCCCCCCCcCCCCCCHHHHHHHHHHHhcCCCHH
Confidence 999999999862 333 68999999988766776554
No 56
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.48 E-value=7.2e-13 Score=128.28 Aligned_cols=169 Identities=16% Similarity=0.090 Sum_probs=126.5
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCC---C------CCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcC
Q 017943 171 TTEAAMETVKLALEMRDLGVVGIDLSGN---P------TKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFL 241 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvGidl~g~---e------~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g 241 (363)
+++++.+.++...+...+.|--+ +.|. + ...+++.+..+++.|+++|+++++|+.+ ...+..+++.|
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~-~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~---~~~i~~~l~~G 193 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIM-ATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYG---AEAIRRAIRAG 193 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEe-ccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcC
Confidence 46777777777766533322211 1111 1 1256788999999999999999999964 34567788899
Q ss_pred CCeeeEecccCHHHHHHHhcCCCcEEEccccccccc---cccC--------------CCCccHHHHHHcCCCEEecCCCC
Q 017943 242 PQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTE---TISS--------------LDIHHFVDLYKAQHPLVLCTDDS 304 (363)
Q Consensus 242 ~~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~---~~~~--------------~~~~pi~~l~~~Gv~v~l~TDd~ 304 (363)
.++|.||..++++++++|+++|+.++.||.++..+. .... ....|+++++++||+|++|||.+
T Consensus 194 ~~~i~H~~~~~~~~~~~l~~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~GTD~~ 273 (342)
T cd01299 194 VDTIEHGFLIDDETIELMKEKGIFLVPTLATYEALAAEGAAPGLPADSAEKVALVLEAGRDALRRAHKAGVKIAFGTDAG 273 (342)
T ss_pred CCEEeecCCCCHHHHHHHHHCCcEEeCcHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 999999999999999999999999999999876430 0000 12368999999999999999998
Q ss_pred C--ccCCChHHHHHHHHHHCCCCHHHHH-HHHHHHHHHcCCCh
Q 017943 305 G--VFSTSVSREYDLAASAFSLGRREMF-QLAKSAVKFIFANG 344 (363)
Q Consensus 305 ~--~~~~~l~~E~~~~~~~~~l~~~~l~-~l~~na~~~sf~~~ 344 (363)
. ..+.++..|+..+.. .+++..++. ..+.|+.+...+++
T Consensus 274 ~~~~~~~~~~~e~~~~~~-~~~~~~~al~~~T~~~a~~~g~~~ 315 (342)
T cd01299 274 FPVPPHGWNARELELLVK-AGGTPAEALRAATANAAELLGLSD 315 (342)
T ss_pred CCCCchhHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHhCccC
Confidence 5 344688899988765 689999855 45689998877653
No 57
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.29 E-value=1.3e-10 Score=114.87 Aligned_cols=137 Identities=16% Similarity=0.103 Sum_probs=113.9
Q ss_pred CCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEecccCHHHHHHHhc--CCCc-EEEccccccccc
Q 017943 201 KGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKS--SKIP-VEICLTSNIRTE 277 (363)
Q Consensus 201 ~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~~~~~~~~l~~--~~i~-ve~cPtSN~~l~ 277 (363)
.+++++.+++++.|++.|+++.+||.+.. .+.-++++|++.+.|++.++++..+.|++ .|++ -++-|.....+.
T Consensus 216 ~fs~~e~~~~l~~a~~~g~~v~~HA~~~~---g~~~A~~~g~~s~~H~~~ld~~~~~~~a~~~~g~~~~~l~p~~~~~l~ 292 (406)
T COG1228 216 QFSPEEIRAVLAAALKAGIPVKAHAHGAD---GIKLAIRLGAKSAEHGTLLDHETAALLAEKGAGTPVPVLLPRTKFELR 292 (406)
T ss_pred ccCHHHHHHHHHHHHHCCCceEEEecccc---hHHHHHHhCcceehhhhhcCHhHHHHHhhccCCCccccccchhhhhhh
Confidence 46788899999999999999999997765 57778889999999999999999999999 7764 245555444443
Q ss_pred cccCCCCccHHHHHHcCCCEEecCCCCCcc-CCChHHHHHHHHHHCCCCHHH-HHHHHHHHHHHcCCCh
Q 017943 278 TISSLDIHHFVDLYKAQHPLVLCTDDSGVF-STSVSREYDLAASAFSLGRRE-MFQLAKSAVKFIFANG 344 (363)
Q Consensus 278 ~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~-~~~l~~E~~~~~~~~~l~~~~-l~~l~~na~~~sf~~~ 344 (363)
- ....|++.++++||+|+|+||.+... ..++..+|..+++.+ +|++| |...+.|++++.-+.+
T Consensus 293 e---~~~~~~~~l~~~GV~vai~TD~~~~~~~~~l~~~m~l~~~~g-mtp~EaL~a~T~naA~alG~~~ 357 (406)
T COG1228 293 E---LDYKPARKLIDAGVKVAIGTDHNPGTSHGSLALEMALAVRLG-MTPEEALKAATINAAKALGLAD 357 (406)
T ss_pred c---ccchhHHHHHHCCCEEEEEcCCCCCchhhHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcc
Confidence 2 23467999999999999999977666 589999999999866 99999 6778899999987664
No 58
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=99.23 E-value=1.9e-09 Score=109.43 Aligned_cols=142 Identities=15% Similarity=0.078 Sum_probs=104.9
Q ss_pred CChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHh-----cC----CCeeeEecccCHHHHHHHhcCCCcEEEcccc
Q 017943 202 GEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-----FL----PQRIGHACCFEEEEWRKLKSSKIPVEICLTS 272 (363)
Q Consensus 202 ~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~-----~g----~~rigHg~~~~~~~~~~l~~~~i~ve~cPtS 272 (363)
.+++.+..+++.|+++|+++++|+........+.++++ .| ..+|.||..++++.++++++.|+.+++||.+
T Consensus 292 ~~~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~~l~~~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~~~gv~~~~~P~~ 371 (479)
T cd01300 292 ISPEELEELVRAADEAGLQVAIHAIGDRAVDTVLDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFAKLGVIASVQPNH 371 (479)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHHHHHhcCCCCCCceeeecccCCHHHHHHHHHcCCceEeCccc
Confidence 36788999999999999999999963221111222221 12 3679999999999999999999999999998
Q ss_pred ccccccc---------cCCCCccHHHHHHcCCCEEecCCCCCccCCChHHHHHHHHH------------HCCCCHHH-HH
Q 017943 273 NIRTETI---------SSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAAS------------AFSLGRRE-MF 330 (363)
Q Consensus 273 N~~l~~~---------~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~------------~~~l~~~~-l~ 330 (363)
+...+.. ..-...|++.++++|+++++|||.|.. ..+++.+++.+.. ..++|..+ +.
T Consensus 372 ~~~~~~~~~~~~lg~~~~~~~~p~~~~~~~Gv~v~lGSD~~~~-~~~p~~~~~~av~~~~~~~~~~~~~~~~ls~~~al~ 450 (479)
T cd01300 372 LYSDGDAAEDRRLGEERAKRSYPFRSLLDAGVPVALGSDAPVA-PPDPLLGIWAAVTRKTPGGGVLGNPEERLSLEEALR 450 (479)
T ss_pred ccCchHHHHHhcccHHHHhcCchHHHHHHCCCeeeccCCCCCC-CCCHHHHHHHHheeeCCCCCCCCCccccCCHHHHHH
Confidence 7643211 011347899999999999999999754 3667777776653 13568888 55
Q ss_pred HHHHHHHHHcCCCh
Q 017943 331 QLAKSAVKFIFANG 344 (363)
Q Consensus 331 ~l~~na~~~sf~~~ 344 (363)
..+.|+++..++++
T Consensus 451 ~~T~~~A~~lg~e~ 464 (479)
T cd01300 451 AYTIGAAYAIGEED 464 (479)
T ss_pred HHHHHHHHHhcccc
Confidence 66799999888753
No 59
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=98.71 E-value=1.1e-07 Score=93.00 Aligned_cols=133 Identities=15% Similarity=0.146 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHcCCceeeecCCCCChhhHHHHH----hcCCC-eeeEecccCHHHHHHHhcCCCcEEEccccccccccc-
Q 017943 206 TFLPALKFAREQGLQITLHCGEIPNKEEIQSML----DFLPQ-RIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETI- 279 (363)
Q Consensus 206 ~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l----~~g~~-rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~- 279 (363)
.+..+++.++.. +++.+|+.+.. .+..++ ++|.+ .+.||... .+++++|++.|+++.+||+.|.....-
T Consensus 181 ~l~~l~~~~~~~-~~v~vHa~~~~---~i~~~l~~~~e~g~~~~i~H~~~~-~~~~~~la~~gv~v~~~P~~~~~~~~~~ 255 (359)
T cd01309 181 KLEALLPVLKGE-IPVRIHAHRAD---DILTAIRIAKEFGIKITIEHGAEG-YKLADELAKHGIPVIYGPTLTLPKKVEE 255 (359)
T ss_pred cHHHHHHHHcCC-eeEEEEeCCHH---HHHHHHHHHHHcCCCEEEECchhH-HHHHHHHHHcCCCEEECccccccccHHH
Confidence 355555555533 99999997533 344333 35765 78999877 778999999999999999988644310
Q ss_pred cCCCCccHHHHHHcC-CCEEecCCCCCccCCChHHHHHHHHHHCCCCHHH-HHHHHHHHHHHcCCCh
Q 017943 280 SSLDIHHFVDLYKAQ-HPLVLCTDDSGVFSTSVSREYDLAASAFSLGRRE-MFQLAKSAVKFIFANG 344 (363)
Q Consensus 280 ~~~~~~pi~~l~~~G-v~v~l~TDd~~~~~~~l~~E~~~~~~~~~l~~~~-l~~l~~na~~~sf~~~ 344 (363)
......|+..|+++| |+|+++||.|......+..++..+. ..|++.++ +..++.|+.+...+++
T Consensus 256 ~~~~~~~~~~l~~aGGv~valgsD~~~~~~~~l~~~~~~a~-~~gl~~~~al~~~T~n~A~~lg~~~ 321 (359)
T cd01309 256 VNDAIDTNAYLLKKGGVAFAISSDHPVLNIRNLNLEAAKAV-KYGLSYEEALKAITINPAKILGIED 321 (359)
T ss_pred hhcchhhHHHHHHcCCceEEEECCCCCccchhHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 011346889999998 9999999997654456666666554 47999988 5566799998877654
No 60
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=98.67 E-value=9.9e-07 Score=84.90 Aligned_cols=132 Identities=11% Similarity=-0.000 Sum_probs=101.8
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEecccCHHHHHHHhcCCCcEEEccccccccccccCC
Q 017943 203 EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSL 282 (363)
Q Consensus 203 ~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~ 282 (363)
+.+..+.+++.|+++|+++..|++++. +.+..+.+.|+.-+.|. .+.+.++.++++|+.+.+|+.+.+..+. ..
T Consensus 161 ~~~~~~~iv~~A~~~gl~vasH~d~~~--~~v~~a~~~Gv~~~E~p--~t~e~a~~a~~~G~~vv~gapn~lrg~s--~~ 234 (325)
T cd01306 161 APANRSELAALARARGIPLASHDDDTP--EHVAEAHELGVVISEFP--TTLEAAKAARELGLQTLMGAPNVVRGGS--HS 234 (325)
T ss_pred CHHHHHHHHHHHHHCCCcEEEecCCCh--HHHHHHHHCCCeeccCC--CCHHHHHHHHHCCCEEEecCcccccCcc--cc
Confidence 457899999999999999999998653 56777888898888776 5788999999999999998764433331 12
Q ss_pred CCccHHHHHHcCCCEEecCCCCCccCCChHHHHHHHHHHCCCCHHHHH-HHHHHHHHHcCCC
Q 017943 283 DIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMF-QLAKSAVKFIFAN 343 (363)
Q Consensus 283 ~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~~~l~~~~l~-~l~~na~~~sf~~ 343 (363)
+..+++++++.|++++||||... .++..-...++...++++.+.+ ..+.|+++...++
T Consensus 235 g~~~~~~ll~~Gv~~al~SD~~p---~sll~~~~~la~~~gl~l~eAl~~aT~nPA~~lGl~ 293 (325)
T cd01306 235 GNVSARELAAHGLLDILSSDYVP---ASLLHAAFRLADLGGWSLPEAVALVSANPARAVGLT 293 (325)
T ss_pred ccHhHHHHHHCCCeEEEEcCCCc---HhHHHHHHHHHHHcCCCHHHHHHHHhHHHHHHcCCC
Confidence 34689999999999999999842 2333333444456799999955 5568999998875
No 61
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=98.52 E-value=4.6e-06 Score=82.21 Aligned_cols=131 Identities=11% Similarity=0.078 Sum_probs=93.6
Q ss_pred CChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHh-cC-CCeeeEeccc------C-----HHHHHHHhcCCCcE-E
Q 017943 202 GEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FL-PQRIGHACCF------E-----EEEWRKLKSSKIPV-E 267 (363)
Q Consensus 202 ~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~-~g-~~rigHg~~~------~-----~~~~~~l~~~~i~v-e 267 (363)
.+++.+....+.|+++|+++++|++|...+ ..+.+. ++ .+.+.||++. + .+.+..++++|+.+ .
T Consensus 170 ~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~--~~~~~~~l~~g~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 247 (379)
T PRK12394 170 YGLKPLTETLRIANDLRCPVAVHSTHPVLP--MKELVSLLRRGDIIAHAFHGKGSTILTEEGAVLAEVRQARERGVIFDA 247 (379)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEeCCCCcc--HHHHHHhcCCCCEEEecCCCCCCCcCCCCCCChHHHHHHHhCCeEEEe
Confidence 457889999999999999999999986532 233333 22 2467888762 2 24678899999887 8
Q ss_pred EccccccccccccCCCCccHHHHHHcCC-CEEecCCCCCccC-----CChHHHHHHHHHHCCCCHHHHHHH-HHHHHHHc
Q 017943 268 ICLTSNIRTETISSLDIHHFVDLYKAQH-PLVLCTDDSGVFS-----TSVSREYDLAASAFSLGRREMFQL-AKSAVKFI 340 (363)
Q Consensus 268 ~cPtSN~~l~~~~~~~~~pi~~l~~~Gv-~v~l~TDd~~~~~-----~~l~~E~~~~~~~~~l~~~~l~~l-~~na~~~s 340 (363)
.||.||.-.. -..+++++|+ +++||||++...+ .+|...+..+. ..+++++++.++ +.|++++.
T Consensus 248 ~~g~s~~~~~--------~~~~~l~~G~~~~~lgTD~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~at~~~a~~~ 318 (379)
T PRK12394 248 ANGRSHFDMN--------VARRAIANGFLPDIISSDLSTITKLAWPVYSLPWVLSKYL-ALGMALEDVINACTHTPAVLM 318 (379)
T ss_pred cCCccccchH--------HHHHHHHCCCCceEEECCCCCCCcccCccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHh
Confidence 8888875222 2458999995 9999999977543 23444444433 468999996655 79999987
Q ss_pred CCC
Q 017943 341 FAN 343 (363)
Q Consensus 341 f~~ 343 (363)
.++
T Consensus 319 g~~ 321 (379)
T PRK12394 319 GMA 321 (379)
T ss_pred CCC
Confidence 764
No 62
>PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ]. Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A ....
Probab=98.51 E-value=3.7e-06 Score=83.18 Aligned_cols=148 Identities=17% Similarity=0.175 Sum_probs=98.9
Q ss_pred EEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHH---HHh-cCCC-eeeEecccCHHHHHHHhcCCCcE
Q 017943 192 GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQS---MLD-FLPQ-RIGHACCFEEEEWRKLKSSKIPV 266 (363)
Q Consensus 192 Gidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~---~l~-~g~~-rigHg~~~~~~~~~~l~~~~i~v 266 (363)
..+..|... .+++.+.++.+.|++.|+++++|+- +...+.. +++ .+.. ++.|+...++++++++++.++.+
T Consensus 213 ~~~~~g~~~-~~~~~l~~~v~~a~~~g~~v~vHa~---gd~a~~~~l~a~~~~~~~~~i~h~~~~~~~~~~~~~~l~~~~ 288 (404)
T PF07969_consen 213 PVHISGLPS-FDPEELEELVRAAREAGLQVAVHAI---GDRAIDEALDAIEAARARGRIEHAELIDPDDIERMAELGVTA 288 (404)
T ss_dssp EEEETC--S-SSHHHHHHHHHHHHHCT-EEEEEEE---SHHHHHHHHHHHHHHTCCHEEEEHCBCCHHHHHHHHHHTTEE
T ss_pred ccccccccc-ccchhHHHHHHHHHhcCCeeEEEEc---CCchHHhHHHHHHhhcccceeeccccCCHHHHHHHHHhCCcc
Confidence 344555443 4556689999999999999999993 3333433 333 3444 99999999999999999999999
Q ss_pred EEccc---------cccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCChHHHHHHHHH----H----------CC
Q 017943 267 EICLT---------SNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAAS----A----------FS 323 (363)
Q Consensus 267 e~cPt---------SN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~----~----------~~ 323 (363)
++.|. ....++........|++.++++|++|+++||.|. +..+.+.-+..+.. . -.
T Consensus 289 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~gsD~p~-~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (404)
T PF07969_consen 289 SVQPHFLFSWGGEWYEERLGPERARRIYPIRSLLDAGVRVALGSDAPV-SPPNPFRGIWAAVTRQMAGERSGPVLGPEQR 367 (404)
T ss_dssp EECCTHHHHETEETHHHHHHHHCGGGBTHHHHHHHCTTEEEE--TTTT-SSCCHHHHHHHHHHHHHCHHTHHHCCGGTGS
T ss_pred ccChhHhhhccchhhhhhhhhHHHHHHhHHHHHHhccCceecCcCCcc-cccCcchhhhhhhcccccccccccccccccc
Confidence 99991 0001111111134799999999999999999986 33444443333331 1 35
Q ss_pred CCHHH-HHHHHHHHHHHcCCCh
Q 017943 324 LGRRE-MFQLAKSAVKFIFANG 344 (363)
Q Consensus 324 l~~~~-l~~l~~na~~~sf~~~ 344 (363)
+|.++ ++.++.|+++..++++
T Consensus 368 ls~~eAl~~~T~~~A~~~g~~~ 389 (404)
T PF07969_consen 368 LSLEEALRAYTSNPARALGLED 389 (404)
T ss_dssp SHHHHHHHHTTHHHHHHTT-TT
T ss_pred CCHHHHHHHHhHHHHHHcCCCC
Confidence 88888 7788899999988765
No 63
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=98.44 E-value=3.9e-06 Score=82.87 Aligned_cols=133 Identities=14% Similarity=0.025 Sum_probs=101.3
Q ss_pred CChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEecccCHHHHHHHhcCCCcEEEccccccccccccC
Q 017943 202 GEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISS 281 (363)
Q Consensus 202 ~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~ 281 (363)
++.+.++.+++.|+++|+++..|+++.. +.+..+.+.|++-+.|. .+.+..+.++++|+.+..|+.+++..+. .
T Consensus 211 ~~~e~i~~~v~~A~~~g~~v~sH~~~~~--~~i~~a~~~Gv~~~e~~--~~~e~~~~~~~~g~~v~~~~p~~~r~~~--~ 284 (383)
T PRK15446 211 YAPPNRRAIAALARARGIPLASHDDDTP--EHVAEAHALGVAIAEFP--TTLEAARAARALGMSVLMGAPNVVRGGS--H 284 (383)
T ss_pred cCHHHHHHHHHHHHHCCCceeecCCCCH--HHHHHHHHcCCceeeCC--CcHHHHHHHHHCCCEEEeCCcccccCCc--c
Confidence 5678899999999999999999997643 56777888898888764 4667889999999999988764443221 1
Q ss_pred CCCccHHHHHHcCCCEEecCCCCCccCCChHHHHHHHHHHCCCCHHHHH-HHHHHHHHHcCCC
Q 017943 282 LDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMF-QLAKSAVKFIFAN 343 (363)
Q Consensus 282 ~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~~~l~~~~l~-~l~~na~~~sf~~ 343 (363)
....++.+++++|++++||||... .++.......+...++++.++. .++.|+++...++
T Consensus 285 ~~~~~~~~~~~~Gv~~~lgSD~~p---~~~~~~~~~~~~~~gls~~~al~~~T~npA~~lgl~ 344 (383)
T PRK15446 285 SGNVSALDLAAAGLLDILSSDYYP---ASLLDAAFRLADDGGLDLPQAVALVTANPARAAGLD 344 (383)
T ss_pred cchHhHHHHHHCCCcEEEEcCCCh---hhHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHcCCC
Confidence 134678999999999999999732 2455555555566799999955 5679999998875
No 64
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=98.24 E-value=1e-05 Score=82.55 Aligned_cols=137 Identities=16% Similarity=0.073 Sum_probs=104.4
Q ss_pred CChhhHHHHHHHHHHcCCceeeecCCCCChhhHH---HHHh-----c---C-CCeeeEecccCHHHHHHHhcCCCcEEEc
Q 017943 202 GEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQ---SMLD-----F---L-PQRIGHACCFEEEEWRKLKSSKIPVEIC 269 (363)
Q Consensus 202 ~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~---~~l~-----~---g-~~rigHg~~~~~~~~~~l~~~~i~ve~c 269 (363)
.+++.|.++.+.|.++|+++.+|+ -+...+. ++++ . + ..||.|.-.++|+.++++++-|+.+.+.
T Consensus 318 ~~~e~l~~~v~~a~~~gl~v~vHA---iGD~Av~~~LdafE~~~~~~~~~~~r~rieH~~~v~~~~i~R~~~Lgv~~svQ 394 (535)
T COG1574 318 LTEEELEELVRAADERGLPVAVHA---IGDGAVDAALDAFEKARKKNGLKGLRHRIEHAELVSPDQIERFAKLGVIASVQ 394 (535)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEEE---echHHHHHHHHHHHHHhhhcCCccCCceeeeeeecCHhHHHHHHhcCceEeec
Confidence 567889999999999999999999 2333333 3332 1 2 3789999999999999999999999999
Q ss_pred ccccccc-cccc-------CCCCccHHHHHHcCCCEEecCCCCCccCCChHHHHHHHHHHC-----------CCCHHH-H
Q 017943 270 LTSNIRT-ETIS-------SLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAF-----------SLGRRE-M 329 (363)
Q Consensus 270 PtSN~~l-~~~~-------~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~~-----------~l~~~~-l 329 (363)
|.==..- ..+. .....|++.|+++|++++.|||.|- ...+.+.-++.++..- .+|..+ |
T Consensus 395 P~f~~~~~~~~~~rlG~~r~~~~~p~~~ll~~G~~la~gSD~Pv-~~~dP~~~i~~AVtr~~~~g~~~~~~~~L~~~eAL 473 (535)
T COG1574 395 PNFLFSDGEWYVDRLGEERASRSYPFRSLLKAGVPLAGGSDAPV-EPYDPWLGIYAAVTRKTPGGRVLGPEERLTREEAL 473 (535)
T ss_pred cccccccchHHHHhhhhhhhhccCcHHHHHHCCCeEeccCCCCC-CCCChHHHHHHHHcCCCCCCCCCccccccCHHHHH
Confidence 8421111 1111 1135799999999999999999987 5578888888887621 488888 6
Q ss_pred HHHHHHHHHHcCC
Q 017943 330 FQLAKSAVKFIFA 342 (363)
Q Consensus 330 ~~l~~na~~~sf~ 342 (363)
+..++||..++|.
T Consensus 474 ~~yT~~~A~a~~~ 486 (535)
T COG1574 474 RAYTEGGAYASGA 486 (535)
T ss_pred HHHhhhhHHhhhc
Confidence 6779999999997
No 65
>PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily []. The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: N-acetyl-D-glucosamine 6-phosphate + H2O = D-glucosamine 6-phosphate + acetateThis family includes dihydroorotase and urease which belong to MEROPS peptidase family M38 (beta-aspartyl dipeptidase, clan MJ), where they are classified as non-peptidase homologs. ; GO: 0016787 hydrolase activity; PDB: 1O12_A 2KAU_C 1FWD_C 1A5M_C 1FWC_C 1FWI_C 1EJV_C 1FWH_C 1A5L_C 1KRA_C ....
Probab=98.13 E-value=2.1e-06 Score=82.20 Aligned_cols=136 Identities=21% Similarity=0.233 Sum_probs=98.5
Q ss_pred CCCCChhhHHHHHHHHHH-----c-CCceeeecCCCCChh----h------H---------HHHHhcCCCeeeEecccCH
Q 017943 199 PTKGEWTTFLPALKFARE-----Q-GLQITLHCGEIPNKE----E------I---------QSMLDFLPQRIGHACCFEE 253 (363)
Q Consensus 199 e~~~~~~~~~~~~~~A~~-----~-gl~~~~HagE~~~~~----~------i---------~~~l~~g~~rigHg~~~~~ 253 (363)
....+.+.+...++.+++ . ++++++|+.|..... . + ...+.-+.+.+.||+++++
T Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 217 (333)
T PF01979_consen 138 PYTVSDEELREAVELAKEFLAAEKLGIPVHIHVAEGTGEVEAMTHLYGMSPIEALDHLGLLEEAIDDGVDLIAHGTHLSD 217 (333)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTHEEEEEESSSHHHHCCCHHHHSHHHHHHHHHHHSCHHHHHHHCEEEEEHTTSEH
T ss_pred cccchhhhhhhHHhhhhhHHHHHhhcccceeeeccCcccceeEeeeeeccchhhhccchhhhhhcccccceeeccccCCH
Confidence 344566778888988888 4 999999999875430 0 0 1222235788999999999
Q ss_pred HHHHHHhcCCCcEEEccccccccc----------c-c---cCC--CCccHHHHHHc-CCCEEecCCCCCccCCChHHHHH
Q 017943 254 EEWRKLKSSKIPVEICLTSNIRTE----------T-I---SSL--DIHHFVDLYKA-QHPLVLCTDDSGVFSTSVSREYD 316 (363)
Q Consensus 254 ~~~~~l~~~~i~ve~cPtSN~~l~----------~-~---~~~--~~~pi~~l~~~-Gv~v~l~TDd~~~~~~~l~~E~~ 316 (363)
+.+++|++.++.+..||++|.... . . ..+ ...++..+++. |++ +|||+ .. +||+
T Consensus 218 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~--lgtDg--~~-----~~l~ 288 (333)
T PF01979_consen 218 EEIELLKETGIGIIHCPISNDSAPHKPGKAIMMDGTAEGIYGLGSGGAPLFRMLDKMGVN--LGTDG--VA-----EELK 288 (333)
T ss_dssp HHHHHHHHHTHEEEEEHHHHHHHHHHTTHHSETTBSBTSBSCTTHHHHHHHHHHHCTTHE--ETTCT--TC-----HHHH
T ss_pred HHhhhhhccCCccccccchhhhhccccccccccchhccccccccccccchhhhhhhcccc--ccccc--cc-----cccc
Confidence 999999999999999999998710 0 0 001 12456666676 988 99992 22 8888
Q ss_pred HHHHHCCCCHHHHH-HHHHHHHHHcCCCh
Q 017943 317 LAASAFSLGRREMF-QLAKSAVKFIFANG 344 (363)
Q Consensus 317 ~~~~~~~l~~~~l~-~l~~na~~~sf~~~ 344 (363)
.+.+ +++++.++. .++.|+++..-+++
T Consensus 289 ~~~~-~~~~~~~~l~~aT~n~Ak~lg~~~ 316 (333)
T PF01979_consen 289 LFVR-LGISPEEALKMATINPAKILGLDD 316 (333)
T ss_dssp HHHH-HHSHHHHHHHHHTHHHHHHTTSTT
T ss_pred cccc-ccccccccccccchhHHHHcCCCC
Confidence 8876 469999955 55699999887743
No 66
>PLN02942 dihydropyrimidinase
Probab=98.05 E-value=0.0012 Score=67.46 Aligned_cols=143 Identities=13% Similarity=0.018 Sum_probs=92.8
Q ss_pred CCChhhHHHHHHHHHHcCCceeeecCCCCCh-hh----------------------------HHHHHh----cCC-Ceee
Q 017943 201 KGEWTTFLPALKFAREQGLQITLHCGEIPNK-EE----------------------------IQSMLD----FLP-QRIG 246 (363)
Q Consensus 201 ~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~-~~----------------------------i~~~l~----~g~-~rig 246 (363)
..+.+.+.++++.|++.|+++++| .|.... .. +..++. +|+ --+.
T Consensus 163 ~~~~~~l~~~~~~a~~~~~~v~~H-aE~~~~~~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~i~ 241 (486)
T PLN02942 163 MVTDELLLEGFKRCKSLGALAMVH-AENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVV 241 (486)
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEE-cCCHHHHHHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEEEE
Confidence 346788999999999999999999 565321 00 111111 233 3478
Q ss_pred EecccCH-HHHHHHhcCCCcEEEcccc-cccccc---------c-cCCC-CccH---------HHHHHcCCCEEecCCCC
Q 017943 247 HACCFEE-EEWRKLKSSKIPVEICLTS-NIRTET---------I-SSLD-IHHF---------VDLYKAQHPLVLCTDDS 304 (363)
Q Consensus 247 Hg~~~~~-~~~~~l~~~~i~ve~cPtS-N~~l~~---------~-~~~~-~~pi---------~~l~~~Gv~v~l~TDd~ 304 (363)
|++.... ++++.++++|+.|++||++ ++.+.. . +.+. .+|+ .++++.|+.++||||-.
T Consensus 242 H~s~~~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G~i~~igTDh~ 321 (486)
T PLN02942 242 HVMSIDAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKALQAALSSGILQLVGTDHC 321 (486)
T ss_pred ECCCHHHHHHHHHHHHCCCcEEEEECchhheeCHHHhcCcccccCcceEECCCCCCHHHHHHHHHHhcCCceEEEECCCC
Confidence 8888777 8999999999999988885 333220 0 0001 3576 48999999999999965
Q ss_pred CccC-CChH--------------HHHH------HHHHHCCCCHHHHHH-HHHHHHHHcCCCh
Q 017943 305 GVFS-TSVS--------------REYD------LAASAFSLGRREMFQ-LAKSAVKFIFANG 344 (363)
Q Consensus 305 ~~~~-~~l~--------------~E~~------~~~~~~~l~~~~l~~-l~~na~~~sf~~~ 344 (363)
.... ..+. -|+. .+.....++..++.+ ++.|+++...+++
T Consensus 322 p~~~~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~i~~~~~l~~~t~~pA~~lgl~~ 383 (486)
T PLN02942 322 PFNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISPTDYVRVTSTECAKIFNIYP 383 (486)
T ss_pred CCChHHhhcccCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCC
Confidence 4332 1111 1322 233334589999665 5689999887753
No 67
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=98.01 E-value=8.1e-05 Score=73.35 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=96.9
Q ss_pred hhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEecccCHHHHHHHhcCCCcEEEccccccccccccCCC
Q 017943 204 WTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLD 283 (363)
Q Consensus 204 ~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~ 283 (363)
.+.+..+.+.|++.|++++.|+.|+. +.+..+.+.|..-+.|. ++.+..+.++++|+.+..|.. |...+. ....
T Consensus 208 ~e~i~~~v~~A~~~G~~v~sH~~~~~--e~i~~a~~~Gv~~~E~~--~t~e~a~~~~~~G~~v~~~~p-~~~r~~-~~~~ 281 (376)
T TIGR02318 208 LANRSEIAALARARGIPLASHDDDTP--EHVAEAHDLGVTISEFP--TTLEAAKEARSLGMQILMGAP-NIVRGG-SHSG 281 (376)
T ss_pred HHHHHHHHHHHHHCCCeEEEecCCCH--HHHHHHHHCCCChhccC--CCHHHHHHHHHcCCeEEECCc-cccccc-cccc
Confidence 57899999999999999999997653 56777777888777775 577889999999999988843 332222 1113
Q ss_pred CccHHHHHHcCCCEEecCCCCCccCCChHHHHHHHHHHCCCCHHHHH-HHHHHHHHHcCCC
Q 017943 284 IHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMF-QLAKSAVKFIFAN 343 (363)
Q Consensus 284 ~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~~~l~~~~l~-~l~~na~~~sf~~ 343 (363)
..++.++++.|+..++|||... ...+...+..+....++++.++. .++.|+++...++
T Consensus 282 ~~~l~~~~~~G~~~~l~SD~~p--~~~l~~~~~~~~~~~gl~~~~al~~~T~npA~~lgl~ 340 (376)
T TIGR02318 282 NLSARELAHEGLLDVLASDYVP--ASLLLAAFQLADDVEGIPLPQAVKMVTKNPARAVGLS 340 (376)
T ss_pred hHHHHHHHHCCCcEEEEcCCCc--HHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHcCCC
Confidence 4578899999999999999832 12233333333333588999955 5579999998875
No 68
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=97.99 E-value=0.003 Score=58.06 Aligned_cols=143 Identities=18% Similarity=0.188 Sum_probs=91.8
Q ss_pred CceEEEecCCCCCC---C----ChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHh-cC--CCeeeEecccCHHHHH
Q 017943 188 LGVVGIDLSGNPTK---G----EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FL--PQRIGHACCFEEEEWR 257 (363)
Q Consensus 188 ~~vvGidl~g~e~~---~----~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~-~g--~~rigHg~~~~~~~~~ 257 (363)
..++|++-.|-... . ..+.|.+.++.|+++|+++.+|++... ..+.+++. .+ ..-+.|+..-+.+.+.
T Consensus 84 ~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~--~~~~~~l~~~~~~~~~i~H~~~~~~~~~~ 161 (252)
T TIGR00010 84 PKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARDAE--EDVLDILREEKPKVGGVLHCFTGDAELAK 161 (252)
T ss_pred CCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecCcc--HHHHHHHHhcCCCCCEEEEccCCCHHHHH
Confidence 35677755543221 1 125688889999999999999997533 33444443 44 3458899866678888
Q ss_pred HHhcCCCcEEEccccccccccccCCCCccHHHHHHcC--CCEEecCCCCCcc---------C-CChHHHHHHHHHHCCCC
Q 017943 258 KLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQ--HPLVLCTDDSGVF---------S-TSVSREYDLAASAFSLG 325 (363)
Q Consensus 258 ~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~G--v~v~l~TDd~~~~---------~-~~l~~E~~~~~~~~~l~ 325 (363)
.+.++|+.+.+++.++.. ...-++++.+.. =++.++||.|-.. + ..+..-+..++...|++
T Consensus 162 ~~~~~g~~~~~~~~~~~~-------~~~~~~~~i~~~~~dril~~TD~p~~~~~~~~~~~~~p~~i~~~~~~~a~~~g~~ 234 (252)
T TIGR00010 162 KLLDLGFYISISGIVTFK-------NAKSLREVVRKIPLERLLVETDSPYLAPVPYRGKRNEPAFVRYTVEAIAEIKGMD 234 (252)
T ss_pred HHHHCCCeEeeceeEecC-------CcHHHHHHHHhCCHHHeEecccCCCCCCCCCCCCCCCChhHHHHHHHHHHHhCcC
Confidence 888899999998754321 111255666654 2699999987432 1 13333344455556999
Q ss_pred HHHHHHHH-HHHHHH
Q 017943 326 RREMFQLA-KSAVKF 339 (363)
Q Consensus 326 ~~~l~~l~-~na~~~ 339 (363)
.+++.+++ .|+.+.
T Consensus 235 ~~~~~~~~~~N~~~~ 249 (252)
T TIGR00010 235 VEELAQITTKNAKRL 249 (252)
T ss_pred HHHHHHHHHHHHHHH
Confidence 99987765 777654
No 69
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=97.96 E-value=0.00032 Score=70.58 Aligned_cols=141 Identities=11% Similarity=0.010 Sum_probs=89.0
Q ss_pred CCCChhhHHHHHHHHHHcCCceeeecCCCCChh--hH---------------------------HHHHh----cCCCeee
Q 017943 200 TKGEWTTFLPALKFAREQGLQITLHCGEIPNKE--EI---------------------------QSMLD----FLPQRIG 246 (363)
Q Consensus 200 ~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~--~i---------------------------~~~l~----~g~~rig 246 (363)
...+.+.+.++++.|+++|+++++|+ |..... .+ ..++. +|+. -
T Consensus 158 ~~~~~~~l~~~~~~a~~~~~~v~~H~-E~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~~~~~~--~ 234 (454)
T TIGR02033 158 LMVDDEELFEILKRAKELGALLQVHA-ENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAALANAP--L 234 (454)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEc-CCHHHHHHHHHHHHHcCCCChhHhhhcCCHHHHHHHHHHHHHHHHHhCCC--E
Confidence 34677889999999999999999997 654210 00 00111 1211 2
Q ss_pred EecccC----HHHHHHHhcCC--CcEEEccccccccccc---------cCCCCcc---------HHHHHHcCCCEEecCC
Q 017943 247 HACCFE----EEEWRKLKSSK--IPVEICLTSNIRTETI---------SSLDIHH---------FVDLYKAQHPLVLCTD 302 (363)
Q Consensus 247 Hg~~~~----~~~~~~l~~~~--i~ve~cPtSN~~l~~~---------~~~~~~p---------i~~l~~~Gv~v~l~TD 302 (363)
|.++++ -++++.+++.| +.+++||.+|+..+.- ...-.+| +.++++.|+..+||||
T Consensus 235 ~i~H~s~~~~~~~i~~~~~~g~~vt~e~~p~~l~~~~~~~~~~~~~~~~~~~~pPlr~~~~~~~l~~~l~~G~i~~igtD 314 (454)
T TIGR02033 235 YVVHVSTASAVDEIAEAREKGQPVYGETCPQYLLLDDTIYDKPGFEGAKYVCSPPLREKEDQDALWSALSSGALQTVGSD 314 (454)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEcCchheeecHHHhcCcccccceeEECCCCCChhhHHHHHHHhhcCCeEEEECC
Confidence 455543 35788888888 6678999998533210 0001257 5599999999999999
Q ss_pred CCCcc-----------------CCChHHHHHHHHH------HCCCCHHHHHH-HHHHHHHHcCCCh
Q 017943 303 DSGVF-----------------STSVSREYDLAAS------AFSLGRREMFQ-LAKSAVKFIFANG 344 (363)
Q Consensus 303 d~~~~-----------------~~~l~~E~~~~~~------~~~l~~~~l~~-l~~na~~~sf~~~ 344 (363)
..... +.+.. |+.+... .-.++.+++.+ ++.|+++...+++
T Consensus 315 h~p~~~~~k~~~~~~~~~~~~~G~~g~-e~~l~~l~~~~v~~~~~~~~~~~~~~t~~pa~~~gl~~ 379 (454)
T TIGR02033 315 HCPFNFAQKKAIGKDDFTKIPNGGPGV-EERMTLLFDEGVATGRITLEKFVELTSTNPAKIFNMYP 379 (454)
T ss_pred CCCCCHHHhhhcccCCHhhCCCCCchH-HhHHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHcCCCC
Confidence 75543 11122 5443322 23589888654 5799999988743
No 70
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=97.83 E-value=0.00036 Score=70.24 Aligned_cols=143 Identities=15% Similarity=0.112 Sum_probs=88.5
Q ss_pred CCCChhhHHHHHHHHHHcCCceeeecCCCCCh-hhH----------------------------HHHHh----cCCC-ee
Q 017943 200 TKGEWTTFLPALKFAREQGLQITLHCGEIPNK-EEI----------------------------QSMLD----FLPQ-RI 245 (363)
Q Consensus 200 ~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~-~~i----------------------------~~~l~----~g~~-ri 245 (363)
...+.+.+..+++.|++.|+++++|+ |.... ... ..++. +++. -+
T Consensus 157 ~~~s~~~l~~~~~~a~~~g~~v~~H~-E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~~~~ 235 (447)
T cd01314 157 LMVDDEELLDVLKRAKELGALVMVHA-ENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYI 235 (447)
T ss_pred CCCCHHHHHHHHHHHHhcCCeEEEEc-CCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 34578899999999999999999996 65321 000 00111 2322 13
Q ss_pred eEecccC-HHHHHHHhcCCCcE--EEcccccccccc-c-----cC--C-CCccH---------HHHHHcCCCEEecCCCC
Q 017943 246 GHACCFE-EEEWRKLKSSKIPV--EICLTSNIRTET-I-----SS--L-DIHHF---------VDLYKAQHPLVLCTDDS 304 (363)
Q Consensus 246 gHg~~~~-~~~~~~l~~~~i~v--e~cPtSN~~l~~-~-----~~--~-~~~pi---------~~l~~~Gv~v~l~TDd~ 304 (363)
.|..... -++++.++++|+.+ ++||.+++.... + .+ + -.+|+ .++++.|+..+||||..
T Consensus 236 ~H~s~~~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~~~g~~~~~~pplr~~~~~~~l~~~l~~G~i~~igsDh~ 315 (447)
T cd01314 236 VHVSSKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRPKEDQEALWDGLSSGTLQTVGSDHC 315 (447)
T ss_pred EeCCCHHHHHHHHHHHHCCCeEEEecCchhheeCHHHhccccccccceEECCCCCChHHHHHHHHHHhCCCeeEEECCCC
Confidence 4444321 24688888888655 899999554321 1 00 0 12454 49999999999999987
Q ss_pred CccC-CChHH--------------HHHHHHH------HCCCCHHHHHH-HHHHHHHHcCCC
Q 017943 305 GVFS-TSVSR--------------EYDLAAS------AFSLGRREMFQ-LAKSAVKFIFAN 343 (363)
Q Consensus 305 ~~~~-~~l~~--------------E~~~~~~------~~~l~~~~l~~-l~~na~~~sf~~ 343 (363)
.... ..+.. |+++... .-.++.+++.+ ++.|+++...+.
T Consensus 316 ~~~~~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~ 376 (447)
T cd01314 316 PFNFAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITLEKFVELTSTNPAKIFGLY 376 (447)
T ss_pred CCCHHHhhcccCCHhhCCCCCchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCC
Confidence 6543 23322 5543322 23589999665 569999887763
No 71
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=97.79 E-value=0.0014 Score=63.55 Aligned_cols=148 Identities=14% Similarity=0.142 Sum_probs=95.2
Q ss_pred CCCceEEEecC-CCCC--CCChhhHHHHHHHHHHcCCceeeecCCCCCh-hhHHHHHhcCCCeeeEecccCH--------
Q 017943 186 RDLGVVGIDLS-GNPT--KGEWTTFLPALKFAREQGLQITLHCGEIPNK-EEIQSMLDFLPQRIGHACCFEE-------- 253 (363)
Q Consensus 186 ~~~~vvGidl~-g~e~--~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~-~~i~~~l~~g~~rigHg~~~~~-------- 253 (363)
..++++||-.. +.+. ..+...+...++.|++.|+++.+|+++.... ..+...++.| .-+.|++.-+.
T Consensus 127 ~~~gi~gik~~~~~~~~~~~~~~~l~~~~~~a~~~~~pi~vH~~~~~~~~~~~~~~l~~g-~~~~H~~~g~~~~~~~~~~ 205 (338)
T cd01307 127 YPDVIVGLKARASKSVVGEWGIKPLELAKKIAKEADLPLMVHIGSPPPILDEVVPLLRRG-DVLTHCFNGKPNGIVDEEG 205 (338)
T ss_pred CcCcEEEEEEEeecccccccCCcHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHhcCC-CEEEeccCCCCCCCCCCCC
Confidence 34578887542 1111 1234558889999999999999999876532 2233333334 46789887532
Q ss_pred ---HHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCC-CEEecCCCCCcc---C--CChHHHHHHHHHHCCC
Q 017943 254 ---EEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQH-PLVLCTDDSGVF---S--TSVSREYDLAASAFSL 324 (363)
Q Consensus 254 ---~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv-~v~l~TDd~~~~---~--~~l~~E~~~~~~~~~l 324 (363)
+.+..+.++|+.+.++-... .+...+..++++.|+ +.+++||-+.-. . ..+...+..+ ...|+
T Consensus 206 ~~~~~~~~~~~~G~~~d~~~G~~-------~~~~~~~~~l~~~G~~~~~lstD~~~~~~~~~p~~~l~~~l~~l-~~~gi 277 (338)
T cd01307 206 EVLPLVRRARERGVIFDVGHGTA-------SFSFRVARAAIAAGLLPDTISSDIHGRNRTNGPVYALATTLSKL-LALGM 277 (338)
T ss_pred cHHHHHHHHHhCCEEEEeCCCCC-------chhHHHHHHHHHCCCCCeeecCCccccCCCCCccccHHHHHHHH-HHcCC
Confidence 57788888998876552110 011235678899997 678999975421 1 2355666666 45799
Q ss_pred CHHHHHHH-HHHHHHHcCC
Q 017943 325 GRREMFQL-AKSAVKFIFA 342 (363)
Q Consensus 325 ~~~~l~~l-~~na~~~sf~ 342 (363)
+.+++.++ +.|+.+..-+
T Consensus 278 ~~ee~~~~~T~NpA~~lgl 296 (338)
T cd01307 278 PLEEVIEAVTANPARMLGL 296 (338)
T ss_pred CHHHHHHHHHHHHHHHcCC
Confidence 99996655 6888887665
No 72
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=97.78 E-value=0.00034 Score=66.22 Aligned_cols=133 Identities=13% Similarity=0.011 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCC-ChhhHHHHH-hcCC--C--eeeEecc-cCHHHHHHHhcCCCcEEEccccccccc
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIP-NKEEIQSML-DFLP--Q--RIGHACC-FEEEEWRKLKSSKIPVEICLTSNIRTE 277 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~-~~~~i~~~l-~~g~--~--rigHg~~-~~~~~~~~l~~~~i~ve~cPtSN~~l~ 277 (363)
+.|+...+.|++.|+|+++|+.+.. ....+.+.+ +.|. . -+.|+.. -+.+.++.+.+.|..+.++..+-....
T Consensus 136 ~~f~~~~~lA~~~~~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~~G~~i~~~~~~~~~~~ 215 (293)
T cd00530 136 KVLRAAARAQKETGVPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRNDDPDYLLKIAALGAYLEFDGIGKDKIF 215 (293)
T ss_pred HHHHHHHHHHHHHCCeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCCCHHHHHHHHhCCCEEEeCCCCccccc
Confidence 4688899999999999999998741 122333333 3453 3 3789984 467889999999999888754321100
Q ss_pred cccC--CCCccHHHHHHcCC--CEEecCCCCCccC----------CChHHHHHHHHHHCCCCHHHHHHHH-HHHH
Q 017943 278 TISS--LDIHHFVDLYKAQH--PLVLCTDDSGVFS----------TSVSREYDLAASAFSLGRREMFQLA-KSAV 337 (363)
Q Consensus 278 ~~~~--~~~~pi~~l~~~Gv--~v~l~TDd~~~~~----------~~l~~E~~~~~~~~~l~~~~l~~l~-~na~ 337 (363)
...+ -...-++++.+.|. ++.|+||.|.... ..+...+...++..|++.+++.+++ .|+.
T Consensus 216 ~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~i~~~~~~N~~ 290 (293)
T cd00530 216 GYPSDETRADAVKALIDEGYGDRLLLSHDVFRKSYLEKRYGGHGYDYILTRFIPRLRERGVTEEQLDTILVENPA 290 (293)
T ss_pred CCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCchhhhhhccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHCHH
Confidence 0000 01123778888887 7899999876432 1234555556667899999988775 5543
No 73
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=97.75 E-value=0.00049 Score=68.08 Aligned_cols=152 Identities=12% Similarity=0.111 Sum_probs=94.7
Q ss_pred ceEEEe-cC--CCCC-CCChhhHHHHHHHHHHcC----Cc--eeeecCCCCCh-hhHHHHHhcC--CCeeeEecccC---
Q 017943 189 GVVGID-LS--GNPT-KGEWTTFLPALKFAREQG----LQ--ITLHCGEIPNK-EEIQSMLDFL--PQRIGHACCFE--- 252 (363)
Q Consensus 189 ~vvGid-l~--g~e~-~~~~~~~~~~~~~A~~~g----l~--~~~HagE~~~~-~~i~~~l~~g--~~rigHg~~~~--- 252 (363)
.|+|++ ++ ..-. ..+.+.+..+.+.||..| .+ +++|.|..... +.+.++++-+ +...=|+++++
T Consensus 151 ~iiG~~~ia~sd~r~~~~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~~~~l~~l~~~~~~~di~~~~f~pth~~r~~ 230 (389)
T TIGR01975 151 KVIGVGEIAISDHRSAQPTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDSKRALQPIYELVENTDVPITQFLPTHINRNV 230 (389)
T ss_pred hhcccceEEEccCcCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCchhhHHHHHHHHHhcCCChhheecCccCCCH
Confidence 477875 43 2221 234578899999999987 99 99999964422 3455554422 12222233342
Q ss_pred ---HHHHHHHhcCCCcEEEccccccccccccCCCCcc---HHHHHHcCCCE---EecCCCCCccC-C-------------
Q 017943 253 ---EEEWRKLKSSKIPVEICLTSNIRTETISSLDIHH---FVDLYKAQHPL---VLCTDDSGVFS-T------------- 309 (363)
Q Consensus 253 ---~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~p---i~~l~~~Gv~v---~l~TDd~~~~~-~------------- 309 (363)
++.++.+++.++.-..+|.+-..+.. . ...| ++.++++|+++ +++||..+... .
T Consensus 231 ~l~~~~i~~~~~gg~iDv~~~~~~~~l~~-~--~~~~~~~~~~~~~~Gv~~~~i~isSD~~gs~p~~~~~g~~~~~g~g~ 307 (389)
T TIGR01975 231 PLFEAGLEFAKKGGTIDLTSSIDPQFRKE-G--EVAPAEGIKKALEAGVPLEKVTFSSDGNGSQPFFDENGELTGLGVGS 307 (389)
T ss_pred HHHHHHHHHHHhCCcEEEeCCCCccchhc-c--ccChHHHHHHHHHcCCCcceEEEEeCCCCCCCccccccccccCCcCc
Confidence 45677777766543444433222221 0 1123 58999999985 99999754322 1
Q ss_pred --ChHHHHHHHHHHCCCCHHH-HHHHHHHHHHHcCCC
Q 017943 310 --SVSREYDLAASAFSLGRRE-MFQLAKSAVKFIFAN 343 (363)
Q Consensus 310 --~l~~E~~~~~~~~~l~~~~-l~~l~~na~~~sf~~ 343 (363)
+|..+++.+....++++++ +..++.|+++..-++
T Consensus 308 ~~sl~~~~~~lv~~g~ls~~eal~~~T~npA~~Lgl~ 344 (389)
T TIGR01975 308 FETLFEEVREAVKDGDVPLEKALRVITSNVAGVLNLT 344 (389)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCCC
Confidence 5788999888877799999 456678999887664
No 74
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=97.74 E-value=0.0015 Score=65.15 Aligned_cols=164 Identities=12% Similarity=0.078 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCC--CC-CCCChhhHHHHHHHHHHcCCceeeecCCCCCh--hhHHHHHh----cC
Q 017943 171 TTEAAMETVKLALEMRDLGVVGIDLSG--NP-TKGEWTTFLPALKFAREQGLQITLHCGEIPNK--EEIQSMLD----FL 241 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvGidl~g--~e-~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~--~~i~~~l~----~g 241 (363)
.+++..++.++..+....|++||.... .+ ...+...+.++++.|+++|..+.+|+-+.... ..+..++. .|
T Consensus 162 ~~~~~~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~e~~av~~~~~~a~~~g 241 (415)
T cd01297 162 TEEELAKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEGDSILEALDELLRLGRETG 241 (415)
T ss_pred CHHHHHHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECcccccHHHHHHHHHHHHHHhC
Confidence 334444444433232234778876543 22 13467889999999999999999999644322 22333333 34
Q ss_pred -CCeeeEecccCH----------HHHHHHhcCCC--cEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCc--
Q 017943 242 -PQRIGHACCFEE----------EEWRKLKSSKI--PVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGV-- 306 (363)
Q Consensus 242 -~~rigHg~~~~~----------~~~~~l~~~~i--~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~-- 306 (363)
+-.|.|...... +.++..+++|+ ..++||..-. + ..++..+++. +.++++||.+..
T Consensus 242 ~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~-~-------~~~~~~l~~~-~~~~i~SDh~~~~~ 312 (415)
T cd01297 242 RPVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAG-S-------EDDVRRIMAH-PVVMGGSDGGALGK 312 (415)
T ss_pred CCEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCC-c-------HHHHHHHHcC-CCceeeeCCCcCCC
Confidence 356899876543 45666666654 4568884211 1 4678889888 899999997552
Q ss_pred --cC--CChHHHHHHHHHHC-CCCHHHHH-HHHHHHHHHcCCC
Q 017943 307 --FS--TSVSREYDLAASAF-SLGRREMF-QLAKSAVKFIFAN 343 (363)
Q Consensus 307 --~~--~~l~~E~~~~~~~~-~l~~~~l~-~l~~na~~~sf~~ 343 (363)
.. ..+..-+......- .++++++. .++.|+++...+.
T Consensus 313 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~ 355 (415)
T cd01297 313 PHPRSYGDFTRVLGHYVRERKLLSLEEAVRKMTGLPARVFGLA 355 (415)
T ss_pred CCcchhCCHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhCCC
Confidence 21 22332222222222 48998855 4578999987764
No 75
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=97.67 E-value=0.0032 Score=61.99 Aligned_cols=156 Identities=11% Similarity=0.011 Sum_probs=99.9
Q ss_pred HHHHHHHHhhCCCceEEEecC-CCCCCCChhhHHHHHHHHHHcCCceeeecCCCCCh------hhHHHHHhc---CCCee
Q 017943 176 METVKLALEMRDLGVVGIDLS-GNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNK------EEIQSMLDF---LPQRI 245 (363)
Q Consensus 176 ~~~~~~a~~~~~~~vvGidl~-g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~------~~i~~~l~~---g~~ri 245 (363)
.+.++.+.+. |+-++ |.-. .+... +..|.+.|+....|..-...+ ..+..+++. .+.-|
T Consensus 175 ~~~i~~~~~~------gi~v~~GH~~-a~~~~----~~~a~~~G~~~~tH~~n~m~~~~~r~~~~~~a~l~~~~~~~~li 243 (374)
T cd00854 175 LELIRYLVER------GIIVSIGHSD-ATYEQ----AVAAFEAGATHVTHLFNAMSPLHHREPGVVGAALSDDDVYAELI 243 (374)
T ss_pred HHHHHHHHHC------CeEEEeeCCc-CCHHH----HHHHHHcCCCeeeECCCCCCCcCCCCCcHHHHhhcCCCCeEEEE
Confidence 6777777665 44442 3221 12222 344556799999998522111 123444442 24578
Q ss_pred eEecccCHHHHHHHhcCC--CcEEEccccccccccccCCCCccHHHH--HHcCCCEEecCCCCCccCCChHHHHHHHHHH
Q 017943 246 GHACCFEEEEWRKLKSSK--IPVEICLTSNIRTETISSLDIHHFVDL--YKAQHPLVLCTDDSGVFSTSVSREYDLAASA 321 (363)
Q Consensus 246 gHg~~~~~~~~~~l~~~~--i~ve~cPtSN~~l~~~~~~~~~pi~~l--~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~ 321 (363)
.||++++++.++++.+.. -.+.+||-||...|..+ +..|+... ...+-.+.+++|.-+.+..+|.++++.+.+.
T Consensus 244 ~dg~Hv~~~~~~~~~r~~g~~~~~lvtD~~~~~G~~~--g~y~~~~~~~~~~~~~~~~~~g~laG~~~~l~~~~~~l~~~ 321 (374)
T cd00854 244 ADGIHVHPAAVRLAYRAKGADKIVLVTDAMAAAGLPD--GEYELGGQTVTVKDGVARLADGTLAGSTLTMDQAVRNMVKW 321 (374)
T ss_pred cCCCcCCHHHHHHHHHhcCCCcEEEEeccccccCCCC--CeEEECCEEEEEECCEEEcCCCCeeehHhhHHHHHHHHHHh
Confidence 999999999999988774 56889999999887422 22333221 1123355666665554458899999999888
Q ss_pred CCCCHHHHHH-HHHHHHHHcCCCh
Q 017943 322 FSLGRREMFQ-LAKSAVKFIFANG 344 (363)
Q Consensus 322 ~~l~~~~l~~-l~~na~~~sf~~~ 344 (363)
.++++.++.+ .+.|+.+...+++
T Consensus 322 ~~l~~~~al~~aT~npA~~lg~~~ 345 (374)
T cd00854 322 GGCPLEEAVRMASLNPAKLLGLDD 345 (374)
T ss_pred hCCCHHHHHHHHhHHHHHHcCCCC
Confidence 7899999665 5689999887753
No 76
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=97.63 E-value=0.0034 Score=57.57 Aligned_cols=126 Identities=17% Similarity=0.246 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHh-cC--CCeeeEecccCHHHHHHHhcCCCcEEEccccccccccccC
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FL--PQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISS 281 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~-~g--~~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~ 281 (363)
..|.+.++.|++.|+++.+|++.. +..+.+.+. ++ ..-+.|+..-+.+.++.+.+.|+.+.+++..+..
T Consensus 108 ~~~~~~~~~a~e~~~pv~iH~~~~--~~~~~~l~~~~~~~~~~i~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~------ 179 (251)
T cd01310 108 EVFRAQLELAKELNLPVVIHSRDA--HEDVLEILKEYGPPKRGVFHCFSGSAEEAKELLDLGFYISISGIVTFK------ 179 (251)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeCc--hHHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHHcCCEEEeeeeeccC------
Confidence 458889999999999999999854 344444443 55 3457898865667888888899999988764210
Q ss_pred CCCccHHHHHHcC--CCEEecCCCCCccC----------CChHHHHHHHHHHCCCCHHHHHHH-HHHHHHH
Q 017943 282 LDIHHFVDLYKAQ--HPLVLCTDDSGVFS----------TSVSREYDLAASAFSLGRREMFQL-AKSAVKF 339 (363)
Q Consensus 282 ~~~~pi~~l~~~G--v~v~l~TDd~~~~~----------~~l~~E~~~~~~~~~l~~~~l~~l-~~na~~~ 339 (363)
...-++++.+.+ -++.++||.|.... ..+..-+..++...|++.+++.++ ..|+.+.
T Consensus 180 -~~~~~~~~~~~~~~dril~~TD~p~~~~~~~~~~~~~~~~~~~~~~~la~~~gl~~e~~~~~~~~N~~~l 249 (251)
T cd01310 180 -NANELREVVKEIPLERLLLETDSPYLAPVPFRGKRNEPAYVKHVAEKIAELKGISVEEVAEVTTENAKRL 249 (251)
T ss_pred -CCHHHHHHHHhCChHHEEEcccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 111255666555 36999999875321 223334454555579999997654 5777653
No 77
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=97.60 E-value=0.0098 Score=53.46 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=108.8
Q ss_pred CCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhh-CCCceEEEecCCCCCCCC--hhhHHHHHHHHHHcCCceeeecCCCCC
Q 017943 154 RGKKIYVRLLLSIDRRETTEAAMETVKLALEM-RDLGVVGIDLSGNPTKGE--WTTFLPALKFAREQGLQITLHCGEIPN 230 (363)
Q Consensus 154 ~~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~-~~~~vvGidl~g~e~~~~--~~~~~~~~~~A~~~gl~~~~HagE~~~ 230 (363)
.+.|++++..+++.-..-|.+..+.++....+ ..++||+||=-|-+...+ .+.|+.-.++|+++++|+.+|.-....
T Consensus 60 ~~~Gl~~~vavGvHPr~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr~nK 139 (254)
T COG1099 60 EKAGLKLKVAVGVHPRAIPPELEEVLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELARELDVPVIVHTPRRNK 139 (254)
T ss_pred HhhCceeeEEeccCCCCCCchHHHHHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCcc
Confidence 46788888887775444444455555555543 345799988666544322 356888999999999999999977766
Q ss_pred hhhHHHHHh----cC--CCe--eeEecccCHHHHHHHhcCC--CcEEEccccccccccccCCCCccHHHHHHcC-CCEEe
Q 017943 231 KEEIQSMLD----FL--PQR--IGHACCFEEEEWRKLKSSK--IPVEICLTSNIRTETISSLDIHHFVDLYKAQ-HPLVL 299 (363)
Q Consensus 231 ~~~i~~~l~----~g--~~r--igHg~~~~~~~~~~l~~~~--i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~G-v~v~l 299 (363)
.+.....++ .| +++ |.|.. .+.++.+.+++ +++++.|. ++... --+.-..++| -++.+
T Consensus 140 ~e~t~~ildi~~~~~l~~~lvvIDH~N---~etv~~vld~e~~vGlTvqPg---Klt~~-----eAveIV~ey~~~r~il 208 (254)
T COG1099 140 KEATSKILDILIESGLKPSLVVIDHVN---EETVDEVLDEEFYVGLTVQPG---KLTVE-----EAVEIVREYGAERIIL 208 (254)
T ss_pred hhHHHHHHHHHHHcCCChhheehhccc---HHHHHHHHhccceEEEEecCC---cCCHH-----HHHHHHHHhCcceEEE
Confidence 554333222 33 443 57754 56777666665 67788883 33311 1233344566 67999
Q ss_pred cCCC-CCccC-CChHHHHHHHHHHCCCCHHHHHHHH-HHHHH
Q 017943 300 CTDD-SGVFS-TSVSREYDLAASAFSLGRREMFQLA-KSAVK 338 (363)
Q Consensus 300 ~TDd-~~~~~-~~l~~E~~~~~~~~~l~~~~l~~l~-~na~~ 338 (363)
|||- .+..+ ..+.+--..+ +.-|++.+++.+.+ .||.+
T Consensus 209 nSD~~s~~sd~lavprtal~m-~~~gv~~~~i~kV~~~NA~~ 249 (254)
T COG1099 209 NSDAGSAASDPLAVPRTALEM-EERGVGEEEIEKVVRENALS 249 (254)
T ss_pred ecccccccccchhhhHHHHHH-HHhcCCHHHHHHHHHHHHHH
Confidence 9994 33444 4444433333 44699999998887 45543
No 78
>PRK09237 dihydroorotase; Provisional
Probab=97.57 E-value=0.0027 Score=62.51 Aligned_cols=147 Identities=16% Similarity=0.096 Sum_probs=92.4
Q ss_pred CceEEEecC-CCCCC--CChhhHHHHHHHHHHcCCceeeecCCCCCh-hhHHHHHhcCCCeeeEecccCH----------
Q 017943 188 LGVVGIDLS-GNPTK--GEWTTFLPALKFAREQGLQITLHCGEIPNK-EEIQSMLDFLPQRIGHACCFEE---------- 253 (363)
Q Consensus 188 ~~vvGidl~-g~e~~--~~~~~~~~~~~~A~~~gl~~~~HagE~~~~-~~i~~~l~~g~~rigHg~~~~~---------- 253 (363)
++++|+... ..+.. .+++........+++.|+++.+|+++.... ..+...+..| +.+.||+..++
T Consensus 148 ~~v~glk~~~~~~v~~~~~~~~~~~~~~~a~~~g~~v~~H~~~~~~~~~~l~~~l~~g-~~~~H~~~~~~~~~~~~~~~~ 226 (380)
T PRK09237 148 DFIVGIKARMSSSVVGDNGIEPLELAKAIAAEANLPLMVHIGNPPPSLEEILELLRPG-DILTHCFNGKPNRILDEDGEL 226 (380)
T ss_pred CcEEEEEEEEecccccccCCchHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHhhccCC-CEEEecCCCCCCCccCCCCcc
Confidence 468887643 11111 122445555666778999999999775422 3333333334 56899997654
Q ss_pred -HHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCC-CEEecCCCCCcc---C--CChHHHHHHHHHHCCCCH
Q 017943 254 -EEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQH-PLVLCTDDSGVF---S--TSVSREYDLAASAFSLGR 326 (363)
Q Consensus 254 -~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv-~v~l~TDd~~~~---~--~~l~~E~~~~~~~~~l~~ 326 (363)
+......++|..+.++..|-. +...+..++.++|+ +.+++||..... + .++...+..+.+ .|+++
T Consensus 227 ~~~a~~~l~~G~~~~ig~g~~~-------~~~~~~~~l~~~g~~~~~l~tD~~~~~~~~~~~~~l~~~~~~~~~-~g~~~ 298 (380)
T PRK09237 227 RPSVLEALERGVRLDVGHGTAS-------FSFKVAEAAIAAGILPDTISTDIYCRNRINGPVYSLATVMSKFLA-LGMPL 298 (380)
T ss_pred hHHHHHHHHCCEEEEecCCCCc-------ccHHHHHHHHHCCCCceEEECCCCCCCcccchHhHHHHHHHHHHH-hCCCH
Confidence 456666777888776543211 11234567889996 679999964322 2 346777777664 69999
Q ss_pred HHHH-HHHHHHHHHcCCC
Q 017943 327 REMF-QLAKSAVKFIFAN 343 (363)
Q Consensus 327 ~~l~-~l~~na~~~sf~~ 343 (363)
+++. ..+.|++++..++
T Consensus 299 ~~al~~aT~n~A~~lgl~ 316 (380)
T PRK09237 299 EEVIAAVTKNAADALRLP 316 (380)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 9955 5568999887763
No 79
>PRK08323 phenylhydantoinase; Validated
Probab=97.52 E-value=0.0012 Score=66.65 Aligned_cols=141 Identities=13% Similarity=-0.005 Sum_probs=88.2
Q ss_pred CCCChhhHHHHHHHHHHcCCceeeecCCCCCh-h----------------------------hHHHHHh----cCCCeee
Q 017943 200 TKGEWTTFLPALKFAREQGLQITLHCGEIPNK-E----------------------------EIQSMLD----FLPQRIG 246 (363)
Q Consensus 200 ~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~-~----------------------------~i~~~l~----~g~~rig 246 (363)
...+.+.+.++++.|+++|+++++|+ |.... . .+..+++ .|+ + .
T Consensus 155 ~~~s~~~l~~~~~~a~~~g~~v~~H~-e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a~~~~~-~-~ 231 (459)
T PRK08323 155 LMLDDDELLRALQRAAELGALPMVHA-ENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGA-P-L 231 (459)
T ss_pred CCCCHHHHHHHHHHHHhcCCEEEEEc-CChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHHHHHHHHHhCC-C-E
Confidence 34677889999999999999999996 54311 0 0111222 232 1 2
Q ss_pred EecccC----HHHHHHHhcCCCc--EEEccc------cccccccc-cCC---CCcc---------HHHHHHcCCCEEecC
Q 017943 247 HACCFE----EEEWRKLKSSKIP--VEICLT------SNIRTETI-SSL---DIHH---------FVDLYKAQHPLVLCT 301 (363)
Q Consensus 247 Hg~~~~----~~~~~~l~~~~i~--ve~cPt------SN~~l~~~-~~~---~~~p---------i~~l~~~Gv~v~l~T 301 (363)
|.++++ -++++.++++|+. +++||. ||+..+.. .+. -.+| +.++++.|+..+|+|
T Consensus 232 ~i~H~s~~~~~~~i~~ak~~g~~vt~e~~p~~l~l~~~~~~~~~~~~g~~~k~~pPlr~~~~~~~l~~~l~~G~i~~i~s 311 (459)
T PRK08323 232 YIVHVSCKEALEAIRRARARGQRVFGETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDALWRGLQDGDLQVVAT 311 (459)
T ss_pred EEEeCCCHHHHHHHHHHHHCCCeEEEEcCccceeecHHHhcCCccccccceEECCCCCChHHHHHHHHHhhcCCeeEEEC
Confidence 444443 2467778888855 679999 88765320 000 0234 669999999999999
Q ss_pred CCCCccC-CChH---------------HHHHHHH------HHCCCCHHHHHH-HHHHHHHHcCCC
Q 017943 302 DDSGVFS-TSVS---------------REYDLAA------SAFSLGRREMFQ-LAKSAVKFIFAN 343 (363)
Q Consensus 302 Dd~~~~~-~~l~---------------~E~~~~~------~~~~l~~~~l~~-l~~na~~~sf~~ 343 (363)
|...... .++. .|++... ....++.+++.+ ++.|+++...+.
T Consensus 312 Dh~p~~~~~~~~~~~~~~~~~p~G~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~lgl~ 376 (459)
T PRK08323 312 DHCPFCFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTGRITLNRFVELTSTNPAKIFGLY 376 (459)
T ss_pred CCCCCChHHhcccccCCHhhCCCCcchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCC
Confidence 9866543 2221 3332222 223589888655 579999988763
No 80
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=97.51 E-value=0.0012 Score=65.17 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=88.1
Q ss_pred CCChhhHHHHHHHHHHcCC------ceeeecCCCCCh-hhHHHHH-hcCCC--e--eeEecc---cCHHHHHHHhcCCCc
Q 017943 201 KGEWTTFLPALKFAREQGL------QITLHCGEIPNK-EEIQSML-DFLPQ--R--IGHACC---FEEEEWRKLKSSKIP 265 (363)
Q Consensus 201 ~~~~~~~~~~~~~A~~~gl------~~~~HagE~~~~-~~i~~~l-~~g~~--r--igHg~~---~~~~~~~~l~~~~i~ 265 (363)
..+.+.+..+.+.++..+. ++++|++|+... +.+.+.+ +.|.. + .+|... ..++.+++++ +|..
T Consensus 167 ~~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~~~~l~~v~~~l~~~Gv~~~~~~~~H~~~~~~~~~~~~~~~~-~G~~ 245 (388)
T PRK10657 167 QPTVEELARLAAEARVGGLLSGKAGIVHVHMGDGKKGLQPLFELLENTDIPISQFLPTHVNRNEPLFEQALEFAK-KGGV 245 (388)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHhcCCCcceeeCcccCCCHHHHHHHHHHHH-cCCe
Confidence 3456777777777765444 899999975422 3333444 45642 2 567665 3345566666 4555
Q ss_pred EEEc-cccccccccccCC-CCccHHHHHHcCC---CEEecCCCCCcc---------------C-CChHHHHHHHHHHCCC
Q 017943 266 VEIC-LTSNIRTETISSL-DIHHFVDLYKAQH---PLVLCTDDSGVF---------------S-TSVSREYDLAASAFSL 324 (363)
Q Consensus 266 ve~c-PtSN~~l~~~~~~-~~~pi~~l~~~Gv---~v~l~TDd~~~~---------------~-~~l~~E~~~~~~~~~l 324 (363)
+.+. +.+++... .+. ...++.++++.|+ ++++|||..+.. + .+|..++..+....|+
T Consensus 246 ~~v~~~~~~~~~~--~~~~~~~~l~~~~~~G~~~d~v~l~tD~~~~~~~~~~~g~~~~~g~~~~~~l~~~~~~~~~~~gi 323 (388)
T PRK10657 246 IDLTTSDPDFLGE--GEVAPAEALKRALEAGVPLSRVTLSSDGNGSLPKFDEDGNLVGLGVGSVESLLEEVRELVKDEGL 323 (388)
T ss_pred EEEecCCCccccc--CccCHHHHHHHHHHcCCChhheEEECCCCCCCceeccCCCEeccCcCchhhHHHHHHHHHHhcCC
Confidence 5333 44443221 111 1245789999999 899999942211 1 3588899988877899
Q ss_pred CHHHHH-HHHHHHHHHcCCCh
Q 017943 325 GRREMF-QLAKSAVKFIFANG 344 (363)
Q Consensus 325 ~~~~l~-~l~~na~~~sf~~~ 344 (363)
+++++. .++.|+++...+++
T Consensus 324 s~~~~l~~aT~npA~~lg~~~ 344 (388)
T PRK10657 324 PLEDALKPLTSNVARFLKLNG 344 (388)
T ss_pred CHHHHHHHHHHHHHHHhCCCC
Confidence 999965 55699998876643
No 81
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=97.50 E-value=0.0016 Score=66.89 Aligned_cols=155 Identities=11% Similarity=0.055 Sum_probs=106.6
Q ss_pred ceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEeccc-------CHHHHHHHhc
Q 017943 189 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF-------EEEEWRKLKS 261 (363)
Q Consensus 189 ~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~-------~~~~~~~l~~ 261 (363)
+++||-+..+ +..++..+..+++.|+++|+++.+|+.-......+..+++.+.+|.-|.++. .|+.++.+++
T Consensus 213 GA~gfKi~~d-~g~t~~~l~~aL~~A~~~gv~V~iHa~tlne~G~~e~t~~a~~g~~iH~~H~egaggghapdii~~~~~ 291 (568)
T PRK13207 213 GAIGLKLHED-WGATPAAIDNCLSVADEYDVQVAIHTDTLNESGFVEDTIAAFKGRTIHTFHTEGAGGGHAPDIIKVAGE 291 (568)
T ss_pred CCCEEeecCC-CCCCHHHHHHHHHHHHHhCCEEEEeCCCcccchHHHHHHHhcCCCEEEEEeecCCCcCCchHHHHHhhc
Confidence 6778876643 2346788999999999999999999964332233455788899999999874 3789999999
Q ss_pred CCCcE-EEccccccccccccC--------------------CCCccH--------HHHHHcCCCEEecCCCCCccC--CC
Q 017943 262 SKIPV-EICLTSNIRTETISS--------------------LDIHHF--------VDLYKAQHPLVLCTDDSGVFS--TS 310 (363)
Q Consensus 262 ~~i~v-e~cPtSN~~l~~~~~--------------------~~~~pi--------~~l~~~Gv~v~l~TDd~~~~~--~~ 310 (363)
.++.- ..+||--...+.+.. +....| .-|+++|+.+++|||.|.+.. .+
T Consensus 292 ~~v~p~st~pt~p~~~~~~~e~~~m~m~~h~l~~~~~~d~~~a~srir~~t~~ae~~l~d~Ga~~~~~SD~p~~~~~~~~ 371 (568)
T PRK13207 292 PNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPSIPEDVAFAESRIRRETIAAEDILHDLGAISMISSDSQAMGRVGEV 371 (568)
T ss_pred CCCccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhccceeecccchhhhCCCEEEecCCcccccccccc
Confidence 99643 455654332222111 011111 236799999999999998854 66
Q ss_pred hHHHHHHHHHHC---CCCHH------------HHHHHHHHHHHHcCCCh
Q 017943 311 VSREYDLAASAF---SLGRR------------EMFQLAKSAVKFIFANG 344 (363)
Q Consensus 311 l~~E~~~~~~~~---~l~~~------------~l~~l~~na~~~sf~~~ 344 (363)
.+.-++.+.+.- |.-.+ .|...+.|++.+.++++
T Consensus 372 ~~r~~q~A~~r~~~~G~~~~d~~~~~n~ri~~~l~~~T~npA~alG~~~ 420 (568)
T PRK13207 372 IIRTWQTAHKMKVQRGPLPGDSGRNDNFRVKRYIAKYTINPAIAHGISH 420 (568)
T ss_pred hhHHHHHHHHHHHccCCCCcccccCccchHHHHHHHHhHHHHHHcCCCc
Confidence 777777777532 32211 17788899999998765
No 82
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=97.47 E-value=0.0033 Score=62.89 Aligned_cols=144 Identities=17% Similarity=0.142 Sum_probs=92.6
Q ss_pred CceEEEecC-CCC-CCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEecccCHHHHHHHhcCCCc
Q 017943 188 LGVVGIDLS-GNP-TKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIP 265 (363)
Q Consensus 188 ~~vvGidl~-g~e-~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~~~~~~~~l~~~~i~ 265 (363)
++++|++-. .-+ .....+.+...++.|++.|+++..|+-... ...+...+..|+ +..|+....++.++++ ++|+.
T Consensus 102 ~~vvglgE~md~~~v~~~~~~l~~~i~~A~~~g~~v~~Ha~g~~-~~~L~a~l~aGi-~~dH~~~~~eea~e~l-~~G~~ 178 (422)
T cd01295 102 PEVVGLGEVMDFPGVIEGDDEMLAKIQAAKKAGKPVDGHAPGLS-GEELNAYMAAGI-STDHEAMTGEEALEKL-RLGMY 178 (422)
T ss_pred CCCcEEEEeccCccccCCcHHHHHHHHHHHhCCCEEEEeCCCCC-HHHHHHHHHcCC-CCCcCCCcHHHHHHHH-HCCCE
Confidence 368887643 211 122446788899999999999999994433 233555555564 3368777777777777 68999
Q ss_pred EEEccccccccccccCCCCccHHHHH--HcCCCEEecCCCCCccC----CChHHHHHHHHHHCCCCHHHHHH-HHHHHHH
Q 017943 266 VEICLTSNIRTETISSLDIHHFVDLY--KAQHPLVLCTDDSGVFS----TSVSREYDLAASAFSLGRREMFQ-LAKSAVK 338 (363)
Q Consensus 266 ve~cPtSN~~l~~~~~~~~~pi~~l~--~~Gv~v~l~TDd~~~~~----~~l~~E~~~~~~~~~l~~~~l~~-l~~na~~ 338 (363)
+.+.|.+-.. ++ ..+.+.+ +.|.+++++||++...+ ..+...++.+ ...|++++++.+ .+.|+++
T Consensus 179 i~i~~g~~~~-----~~--~~~~~~l~~~~~~~i~l~TD~~~~~~~~~~g~~~~v~r~a-~~~g~s~~eal~~aT~n~A~ 250 (422)
T cd01295 179 VMLREGSIAK-----NL--EALLPAITEKNFRRFMFCTDDVHPDDLLSEGHLDYIVRRA-IEAGIPPEDAIQMATINPAE 250 (422)
T ss_pred EEEECcccHh-----hH--HHHHHhhhhccCCeEEEEcCCCCchhhhhcchHHHHHHHH-HHcCCCHHHHHHHHhHHHHH
Confidence 9888765310 00 0111111 25799999999974322 3444455544 447999999665 5689998
Q ss_pred HcCC
Q 017943 339 FIFA 342 (363)
Q Consensus 339 ~sf~ 342 (363)
...+
T Consensus 251 ~~gl 254 (422)
T cd01295 251 CYGL 254 (422)
T ss_pred HcCC
Confidence 8876
No 83
>PRK09357 pyrC dihydroorotase; Validated
Probab=97.47 E-value=0.02 Score=57.17 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=92.8
Q ss_pred CceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChh-------------------------hHHHHHh---
Q 017943 188 LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKE-------------------------EIQSMLD--- 239 (363)
Q Consensus 188 ~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~-------------------------~i~~~l~--- 239 (363)
.++.+|...+ ....+++.+..+++.|+++|+++++|+.|..-.. .+..++.
T Consensus 143 ~gv~~~~~~~-~~~~~~~~l~~~~~~a~~~g~~v~iH~ee~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~ 221 (423)
T PRK09357 143 AGVVAFSDDG-IPVQDARLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAE 221 (423)
T ss_pred CCcEEEECCC-cccCCHHHHHHHHHHHHhcCCEEEEeCCCHHHhhcccccCChhhHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 3577776543 3345678899999999999999999998753110 0112221
Q ss_pred -cCC-CeeeEecccC-HHHHHHHhcCC--CcEEEcc-------------ccccccccccCCC----CccHHHHHHcCCCE
Q 017943 240 -FLP-QRIGHACCFE-EEEWRKLKSSK--IPVEICL-------------TSNIRTETISSLD----IHHFVDLYKAQHPL 297 (363)
Q Consensus 240 -~g~-~rigHg~~~~-~~~~~~l~~~~--i~ve~cP-------------tSN~~l~~~~~~~----~~pi~~l~~~Gv~v 297 (363)
.|+ -++.|..... -+.++..+++| |..++|| .++.++. +.++ ..++.++++.|+..
T Consensus 222 ~~g~~~hi~H~s~~~~~~~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~~~~~~k~~--Pplr~~~~~~~l~~~l~~G~~~ 299 (423)
T PRK09357 222 ATGARVHICHVSTAGSVELIRWAKALGIKVTAEVTPHHLLLTDEDLLTYDPNYKVN--PPLRTEEDREALIEGLKDGTID 299 (423)
T ss_pred HHCCcEEEEeCCCHHHHHHHHHHHHcCCCEEEEechHHheEcHHHHhCcCCceEEC--CCCCCHHHHHHHHHHHHcCCCe
Confidence 232 2455655432 34566666666 5567999 3333222 2121 34688899999999
Q ss_pred EecCCCCCccCC----Ch--------HHHHHH------HHHHCCCCHHHHHH-HHHHHHHHcCCCh
Q 017943 298 VLCTDDSGVFST----SV--------SREYDL------AASAFSLGRREMFQ-LAKSAVKFIFANG 344 (363)
Q Consensus 298 ~l~TDd~~~~~~----~l--------~~E~~~------~~~~~~l~~~~l~~-l~~na~~~sf~~~ 344 (363)
+||||-+..... ++ .-|+.. +...-+++.+++.+ ++.|+++...+++
T Consensus 300 ~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~A~~~g~~~ 365 (423)
T PRK09357 300 AIATDHAPHAREEKECEFEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKMTINPARILGLPA 365 (423)
T ss_pred EEecCCCCCChHHccCCHhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCC
Confidence 999997654321 11 012211 22223689999665 5799999887643
No 84
>PRK10812 putative DNAse; Provisional
Probab=97.41 E-value=0.061 Score=50.45 Aligned_cols=131 Identities=13% Similarity=0.130 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHh-cCC---CeeeEecccCHHHHHHHhcCCCcEEEcccccccccccc
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FLP---QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETIS 280 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~-~g~---~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~ 280 (363)
.-|+...+.|+++|+|+.+|+-... +.+.+.+. .+. .-+.|++.=+.+.++.+.+.|..+.+.+.... .
T Consensus 111 ~vf~~ql~lA~e~~~Pv~iH~r~a~--~~~l~iL~~~~~~~~~~v~H~fsG~~~~a~~~~~~G~~is~~g~~t~--~--- 183 (265)
T PRK10812 111 ESFRHHIQIGRELNKPVIVHTRDAR--ADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTF--R--- 183 (265)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeCch--HHHHHHHHhhcCCCCCEEEEeecCCHHHHHHHHHCCCEEEECeeeec--C---
Confidence 4577788889999999999985433 34455554 333 24889997678899999999998887643211 0
Q ss_pred CCCCccHHHHHHcC--CCEEecCCCCCcc---------C-CChHHHHHHHHHHCCCCHHHHHHHH-HHHHHHcCCCh
Q 017943 281 SLDIHHFVDLYKAQ--HPLVLCTDDSGVF---------S-TSVSREYDLAASAFSLGRREMFQLA-KSAVKFIFANG 344 (363)
Q Consensus 281 ~~~~~pi~~l~~~G--v~v~l~TDd~~~~---------~-~~l~~E~~~~~~~~~l~~~~l~~l~-~na~~~sf~~~ 344 (363)
...-++++.+.+ =++.+.||.|-.. . ..+..-+..+++..|++.+++.+.+ .|+.+.-.++.
T Consensus 184 --~~~~~~~~~~~ipldrlLlETD~P~~~p~~~~g~~n~P~~i~~v~~~ia~l~g~~~eei~~~~~~N~~~lf~~~~ 258 (265)
T PRK10812 184 --NAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVSVEELAQVTTDNFARLFHIDA 258 (265)
T ss_pred --ccHHHHHHHHhCChhhEEEecCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCh
Confidence 123466777665 3689999998652 1 3344545666667799999987665 67766654533
No 85
>PRK06740 histidinol-phosphatase; Validated
Probab=96.87 E-value=0.17 Score=48.98 Aligned_cols=69 Identities=17% Similarity=0.104 Sum_probs=44.4
Q ss_pred HHHHHHhcCCCcEEEccccccccccccCCCCcc----HHHHHHcCCCEEecCCCCCccC-CChHHHHHHHHHHCCCC
Q 017943 254 EEWRKLKSSKIPVEICLTSNIRTETISSLDIHH----FVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASAFSLG 325 (363)
Q Consensus 254 ~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~p----i~~l~~~Gv~v~l~TDd~~~~~-~~l~~E~~~~~~~~~l~ 325 (363)
+.++.++++|+.+|++-.+...-+ .. ...| ++.+.+.|+|++||||.=.... ....++...+++.+|++
T Consensus 243 ~I~~a~~~~g~~lEINt~~~~r~~-~~--e~yP~~~il~~~~e~Gv~~tlgSDAH~p~~VG~~~~~a~~~l~~~G~~ 316 (331)
T PRK06740 243 EIARALVETNTATEINAGLYYRYP-VR--EMCPSPLFLQVLAKHEVPITLSSDAHYPNDLGKYVEENVKTLRNHGVT 316 (331)
T ss_pred HHHHHHHHcCCEEEEECccccCCC-CC--CCCcCHHHHHHHHHCCCeEEEeeCCCCHHHHHhHHHHHHHHHHHcCCc
Confidence 456889999999999876422211 11 1234 4677889999999999633333 23334555566667764
No 86
>PRK09875 putative hydrolase; Provisional
Probab=96.42 E-value=0.12 Score=49.19 Aligned_cols=132 Identities=11% Similarity=0.061 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCC-ChhhHHHHHhcCC--Ce--eeEecc-cCHHHHHHHhcCCCcEEEcccccccccc
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIP-NKEEIQSMLDFLP--QR--IGHACC-FEEEEWRKLKSSKIPVEICLTSNIRTET 278 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~-~~~~i~~~l~~g~--~r--igHg~~-~~~~~~~~l~~~~i~ve~cPtSN~~l~~ 278 (363)
..|+.+.+.+++.|.|+++|.+-.. +.+.+.-+.+.|+ +| |+|.-. .+.+.+..++++|+.+++|-..-. ..
T Consensus 139 kvl~Aaa~a~~~TG~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~~--~~ 216 (292)
T PRK09875 139 KVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKN--SY 216 (292)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCCc--cc
Confidence 4577777778889999999976432 2222332334565 66 689853 477899999999999999732100 00
Q ss_pred ccC-CCCccHHHHHHcC--CCEEecCCCCCcc--------C-CChHHHHHHHHHHCCCCHHHHHHHH-HHHHH
Q 017943 279 ISS-LDIHHFVDLYKAQ--HPLVLCTDDSGVF--------S-TSVSREYDLAASAFSLGRREMFQLA-KSAVK 338 (363)
Q Consensus 279 ~~~-~~~~pi~~l~~~G--v~v~l~TDd~~~~--------~-~~l~~E~~~~~~~~~l~~~~l~~l~-~na~~ 338 (363)
.++ -..--+..+.++| =+|.|++|-.... + +.+...+.-..+..|+|.+++.+|. .|..+
T Consensus 217 ~pd~~r~~~i~~L~~~Gy~drilLS~D~~~~~~~~~~gg~G~~~i~~~~ip~L~~~Gvse~~I~~m~~~NP~r 289 (292)
T PRK09875 217 YPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGYDYLLTTFIPQLRQSGFSQADVDVMLRENPSQ 289 (292)
T ss_pred CCHHHHHHHHHHHHhcCCCCeEEEeCCCCCcccccccCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHCHHH
Confidence 110 0112356677887 3699999942221 1 3566777666677899999999886 45444
No 87
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=96.41 E-value=0.84 Score=45.50 Aligned_cols=179 Identities=17% Similarity=0.188 Sum_probs=96.1
Q ss_pred cEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEE--EecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCC-----
Q 017943 158 IYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVG--IDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPN----- 230 (363)
Q Consensus 158 i~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvG--idl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~----- 230 (363)
+...+...+.+....+...+..++ ...+++| |...+.+. .+...+.++|+.++++|+++.+|+-+..-
T Consensus 103 vd~~~~~~~~~~~~~~~l~e~~~l----~~~Gv~g~~f~~~~~~~-~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~ 177 (411)
T TIGR00857 103 VDVHLYGGVTQGNQGKELTEAYEL----KEAGAVGRMFTDDGSEV-QDILSMRRALEYAAIAGVPIALHAEDPDLIYGGV 177 (411)
T ss_pred ccEEEEEEEecCCccccHHHHHHH----HHCCcEEEEEEeCCccc-CCHHHHHHHHHHHHHcCCEEEEecCCHHHHhhhh
Confidence 444555556554333233333222 2336888 66544332 35678999999999999999999754310
Q ss_pred ---------------hh-----hHHHHHhc----CCCeeeEecccC-H---HHHHHHhcCC--CcEEEccccccccc---
Q 017943 231 ---------------KE-----EIQSMLDF----LPQRIGHACCFE-E---EEWRKLKSSK--IPVEICLTSNIRTE--- 277 (363)
Q Consensus 231 ---------------~~-----~i~~~l~~----g~~rigHg~~~~-~---~~~~~l~~~~--i~ve~cPtSN~~l~--- 277 (363)
|. .+..++.+ ++. -|-.+++ . +.++..+++| |..|+||-.-+...
T Consensus 178 ~~~g~~~~~~~~~~~p~~aE~~ai~~~~~la~~~~~~--~~i~Hvs~~~~l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~ 255 (411)
T TIGR00857 178 MHEGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCP--VHICHISTKESLELIVKAKSQGIKITAEVTPHHLLLSEEDV 255 (411)
T ss_pred hcCCcccHhhCCCCCCHHHHHHHHHHHHHHHHHHCCC--EEEEeCCCHHHHHHHHHHHHcCCcEEEeechhhheecHHHH
Confidence 10 11222222 321 2444442 3 4455556665 77799994322111
Q ss_pred --------cccCCC----CccHHHHHHcCCCEEecCCCCCccC--------------CChHH---HHHHHHHHCCCCHHH
Q 017943 278 --------TISSLD----IHHFVDLYKAQHPLVLCTDDSGVFS--------------TSVSR---EYDLAASAFSLGRRE 328 (363)
Q Consensus 278 --------~~~~~~----~~pi~~l~~~Gv~v~l~TDd~~~~~--------------~~l~~---E~~~~~~~~~l~~~~ 328 (363)
..+.++ ..++.+.+..|+-.+|+||-..... ..+-. -+.......++++++
T Consensus 256 ~~~~~~~k~~Pplr~~~~~~~L~~~l~~g~i~~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~ 335 (411)
T TIGR00857 256 ARLDGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLEEKTKEFAAAPPGIPGLETALPLLLQLLVKGLISLKD 335 (411)
T ss_pred hCCCccEEEcCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCChHHccCCHhhCCCCceeHHHHHHHHHHHHHhCCCCHHH
Confidence 011111 1236677889999999999643321 01101 111122223689998
Q ss_pred HHH-HHHHHHHHcCCC
Q 017943 329 MFQ-LAKSAVKFIFAN 343 (363)
Q Consensus 329 l~~-l~~na~~~sf~~ 343 (363)
+.+ ++.|+.+...++
T Consensus 336 ~~~~~t~~pa~~~g~~ 351 (411)
T TIGR00857 336 LIRMLSINPARIFGLP 351 (411)
T ss_pred HHHHHhHHHHHHhCCC
Confidence 665 578998887764
No 88
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=96.38 E-value=0.25 Score=49.78 Aligned_cols=131 Identities=12% Similarity=0.048 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHHcCCceee-ecCCCCChhhHHHHHhcCCC----eeeEecccCHHHHHHHhcCCCcEEEcccccccccc
Q 017943 204 WTTFLPALKFAREQGLQITL-HCGEIPNKEEIQSMLDFLPQ----RIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTET 278 (363)
Q Consensus 204 ~~~~~~~~~~A~~~gl~~~~-HagE~~~~~~i~~~l~~g~~----rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~ 278 (363)
......++++|++.|+++++ |.+-....+.+..+-..|.. -.-|...++++.++ +.+..+.++|.. ...
T Consensus 215 ~~~~~~~~~la~~~g~~vhi~Hiss~~~~~~i~~~~~~g~~it~e~~ph~l~l~~~~~~---~~~~~~~~~Ppl--r~~- 288 (443)
T TIGR03178 215 VEAIRRTLALAKVTGCRVHVVHLSSAEAVELITEAKQEGLDVTVETCPHYLTLTAEEVP---DGGTLAKCAPPI--RDL- 288 (443)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEECccceEecHHHhh---CcCcceEEcCCC--CCh-
Confidence 35678889999999998844 77421112223333334532 23566677776653 457778888842 211
Q ss_pred ccCCCCccHHHHHHcCCCEEecCCC-CCcc-------------C-----CChHHHHHHHHHHCCCCHHHHHH-HHHHHHH
Q 017943 279 ISSLDIHHFVDLYKAQHPLVLCTDD-SGVF-------------S-----TSVSREYDLAASAFSLGRREMFQ-LAKSAVK 338 (363)
Q Consensus 279 ~~~~~~~pi~~l~~~Gv~v~l~TDd-~~~~-------------~-----~~l~~E~~~~~~~~~l~~~~l~~-l~~na~~ 338 (363)
. ....+.+.++.|+..+|+||- |... + +.+..-+..+....+++++++.+ ++.|+++
T Consensus 289 -~--~~~~l~~~l~~G~i~~i~SDh~p~~~~~K~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~pA~ 365 (443)
T TIGR03178 289 -A--NQEGLWEALLNGLIDCVVSDHSPCTPDLKRAGDFFKAWGGIAGLQSTLDVMFDEAVQKRGLPLEDIARLMATNPAK 365 (443)
T ss_pred -H--HHHHHHHHHHcCCccEEeCCCCCCChHHcCcCChhhCCCCeeEHHHhHHHHHHHHHHhcCCCHHHHHHHHhHHHHH
Confidence 1 124466778889999999996 4331 1 11222223343456899999665 5789999
Q ss_pred HcCCC
Q 017943 339 FIFAN 343 (363)
Q Consensus 339 ~sf~~ 343 (363)
...++
T Consensus 366 ~~g~~ 370 (443)
T TIGR03178 366 RFGLA 370 (443)
T ss_pred HcCCC
Confidence 98873
No 89
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=96.33 E-value=0.34 Score=45.19 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHh-cCC--CeeeEecccCHHHHHHHhcCCCcEEEccccccccccccC
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FLP--QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISS 281 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~-~g~--~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~ 281 (363)
+.|...++.|+++++|+.+|+=.. .+.+.+.+. .+. ..+-||+.=+.+.++.+.+.|..+.+.+..+..
T Consensus 114 ~vf~~ql~lA~~~~~Pv~iH~r~a--~~~~~~il~~~~~~~~~i~H~fsG~~~~a~~~l~~G~~iS~~g~it~~------ 185 (258)
T PRK11449 114 WLLDEQLKLAKRYDLPVILHSRRT--HDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYP------ 185 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCc--cHHHHHHHHhcCCCCCeEEEcCCCCHHHHHHHHHCCCEEEeCcccccc------
Confidence 457778889999999999999532 234555554 343 348899877888999999999888776654321
Q ss_pred CCCccHHHHHHcCC---CEEecCCCCCcc----------CCChHHHHHHHHHHCCCCHHHHHHH-HHHHHHH
Q 017943 282 LDIHHFVDLYKAQH---PLVLCTDDSGVF----------STSVSREYDLAASAFSLGRREMFQL-AKSAVKF 339 (363)
Q Consensus 282 ~~~~pi~~l~~~Gv---~v~l~TDd~~~~----------~~~l~~E~~~~~~~~~l~~~~l~~l-~~na~~~ 339 (363)
....++++.+ .+ ++.+.||.|-+. ...+..-+..++...+.+.+++.+. ..|+.+.
T Consensus 186 -~~~~~~~~~~-~ipldriL~ETD~P~l~p~~~~~~~n~p~~~~~~~~~ia~l~~~~~~el~~~~~~N~~~l 255 (258)
T PRK11449 186 -RASKTRDVIA-KLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFDVLCELRPEPADEIAEVLLNNTYTL 255 (258)
T ss_pred -CcHHHHHHHH-hCChhhEEEecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1123455443 23 489999998543 1345555666677778999887654 4666543
No 90
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=96.27 E-value=0.077 Score=54.72 Aligned_cols=156 Identities=12% Similarity=0.045 Sum_probs=97.6
Q ss_pred CceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEecccC-------HHHHHHHh
Q 017943 188 LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFE-------EEEWRKLK 260 (363)
Q Consensus 188 ~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~~-------~~~~~~l~ 260 (363)
.+++||-+.++. ..++..+..+++.|+++|+++.+|+.-......+...+..-..|--|-++.+ |+.++...
T Consensus 218 aGA~GfKi~~d~-g~t~~~i~~aL~~A~~~gv~V~iHadtlne~g~~E~t~aa~~gr~iH~~H~egaggghapd~~~~~~ 296 (573)
T PRK13206 218 GGAGGFKLHEDW-GSTPAAIDACLRVADAAGVQVALHSDTLNEAGFVEDTLAAIAGRSIHAYHTEGAGGGHAPDIITVAS 296 (573)
T ss_pred CCCcEEeecCcc-CCCHHHHHHHHHHHHHhCCEEEEECCCccccchhhHHHHHhcCCeEEEEeccCCCcCcccHHHHhcC
Confidence 378899877532 3577899999999999999999999643322222333333234656666542 68888888
Q ss_pred cCCCc-EEEccccccccccccC--------------------CCCccH--------HHHHHcCCCEEecCCCCCccC---
Q 017943 261 SSKIP-VEICLTSNIRTETISS--------------------LDIHHF--------VDLYKAQHPLVLCTDDSGVFS--- 308 (363)
Q Consensus 261 ~~~i~-ve~cPtSN~~l~~~~~--------------------~~~~pi--------~~l~~~Gv~v~l~TDd~~~~~--- 308 (363)
+.+|. -..+||--...+.+.. +....| ..|.+.|+.++++||.|.+..
T Consensus 297 ~~n~lp~stnpt~p~~~nt~~e~~~m~m~~h~l~~~~~~d~~fa~srir~~ti~ae~~l~d~G~~~~~~SDs~~~~~~~e 376 (573)
T PRK13206 297 HPNVLPSSTNPTRPHTVNTLDEHLDMLMVCHHLNPAVPEDLAFAESRIRPSTIAAEDVLHDMGAISMIGSDSQAMGRIGE 376 (573)
T ss_pred CCCCcCCCCCCCCCCcccchhhhhCeEEeeccCCCCCcchhhhhhhhccceeeccCchHhhCCcEEeccCCccccccccc
Confidence 88863 2445553332222111 011111 247899999999999998654
Q ss_pred --CChHHHHHHHHHHCC----------CCHHH-HHHHHHHHHHHcCCCh
Q 017943 309 --TSVSREYDLAASAFS----------LGRRE-MFQLAKSAVKFIFANG 344 (363)
Q Consensus 309 --~~l~~E~~~~~~~~~----------l~~~~-l~~l~~na~~~sf~~~ 344 (363)
.+.++....+...-+ ++.++ |...+.|++.+.+++.
T Consensus 377 ~~~~~~q~a~~~~~rr~~l~g~~~~~~~~v~~al~~yT~nPA~alG~~~ 425 (573)
T PRK13206 377 VVLRTWQTAHVMKRRRGALPGDGRADNNRARRYVAKYTICPAVAHGIDH 425 (573)
T ss_pred hhhhHHHHHHHHHhccCCCCCCCcccchhHHHHHHHHHHHHHHHhCCCc
Confidence 455555555544322 44555 5567899999888764
No 91
>PRK09236 dihydroorotase; Reviewed
Probab=96.24 E-value=0.036 Score=55.87 Aligned_cols=128 Identities=9% Similarity=0.079 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHcCCceeeecCCCCCh-hhHHHHHhcCCC----eeeEecccCHHHHHHHhcCCCcEEEcccccccccccc
Q 017943 206 TFLPALKFAREQGLQITLHCGEIPNK-EEIQSMLDFLPQ----RIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETIS 280 (363)
Q Consensus 206 ~~~~~~~~A~~~gl~~~~HagE~~~~-~~i~~~l~~g~~----rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~ 280 (363)
....+.++|++.|.++++|..++... +.+..+-..|.+ ---|.+++++++++. .+..+.+||. +....
T Consensus 217 av~~~~~la~~~~~~~hi~h~st~~~~~~i~~~~~~g~~vt~e~~~H~l~l~~~~~~~---~~~~~~~~Pp--lr~~~-- 289 (444)
T PRK09236 217 SSSLAVSLAKKHGTRLHVLHISTAKELSLFENGPLAEKRITAEVCVHHLWFDDSDYAR---LGNLIKCNPA--IKTAS-- 289 (444)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHHCCCCEEEEEchhhhhcCHHHHhc---cCceEEECCC--CCCHH--
Confidence 35678888999999999977654321 122222222322 235788888887763 4888999995 43331
Q ss_pred CCCCccHHHHHHcCCCEEecCCCCCcc-------------CCChHHH-----HHHHHHHCCCCHHHHH-HHHHHHHHHcC
Q 017943 281 SLDIHHFVDLYKAQHPLVLCTDDSGVF-------------STSVSRE-----YDLAASAFSLGRREMF-QLAKSAVKFIF 341 (363)
Q Consensus 281 ~~~~~pi~~l~~~Gv~v~l~TDd~~~~-------------~~~l~~E-----~~~~~~~~~l~~~~l~-~l~~na~~~sf 341 (363)
...++.++++.|+..+||||..... +.+..+. +. .....+++++++. .++.|+++...
T Consensus 290 --~~~~l~~~l~~G~i~~igtDh~p~~~~~k~~~~~~~~~G~~~~e~~l~~l~~-~v~~~~~~~~~~~~~~t~~pA~~lg 366 (444)
T PRK09236 290 --DREALRQALADDRIDVIATDHAPHTWEEKQGPYFQAPSGLPLVQHALPALLE-LVHEGKLSLEKVVEKTSHAPAILFD 366 (444)
T ss_pred --HHHHHHHHHhCCCCcEEECCCCCCCHHHhcCCcccCCCCcccHHHHHHHHHH-HHHhcCCCHHHHHHHHHHhHHHhcC
Confidence 3468999999999999999975431 1112222 22 2223579999955 56789998877
Q ss_pred CC
Q 017943 342 AN 343 (363)
Q Consensus 342 ~~ 343 (363)
++
T Consensus 367 l~ 368 (444)
T PRK09236 367 IK 368 (444)
T ss_pred CC
Confidence 64
No 92
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=96.11 E-value=0.02 Score=56.28 Aligned_cols=130 Identities=12% Similarity=0.075 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHHcCCceee-ecCCCCChhhHHHHHhcCCC----eeeEecccCHHHHHHHhcCCCcEEEccccccccccc
Q 017943 205 TTFLPALKFAREQGLQITL-HCGEIPNKEEIQSMLDFLPQ----RIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETI 279 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~-HagE~~~~~~i~~~l~~g~~----rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~ 279 (363)
.....+.++|+++|.++++ |+.-....+.+..+-+.|.. -..|.+.++++.+.. .+..+-+||.. +.-
T Consensus 172 ~~v~~~~~la~~~~~~i~i~h~ss~~~l~~i~~~~~~G~~~~~e~~~h~L~ld~~~~~~---~~~~~k~~Ppl----r~~ 244 (374)
T cd01317 172 IMVARDLELAEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALES---YDTNAKVNPPL----RSE 244 (374)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCCEEEEecHHHHhcCHHHHhc---cCCceEEcCCC----CCH
Confidence 4567888999999999988 65311111233333334532 235777888776543 46667788842 210
Q ss_pred cCCCCccHHHHHHcCCCEEecCCCCCccC-CCh--HH---------HHH------HHHHHCCCCHHHHHH-HHHHHHHHc
Q 017943 280 SSLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSV--SR---------EYD------LAASAFSLGRREMFQ-LAKSAVKFI 340 (363)
Q Consensus 280 ~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~-~~l--~~---------E~~------~~~~~~~l~~~~l~~-l~~na~~~s 340 (363)
-...++.++++.|+.++||||...... ..+ +. |+. .+.+...++.+++.+ ++.|+++..
T Consensus 245 --~~~~~l~~~~~~G~i~~igsDh~p~~~~~k~~~~~~~~~Gi~g~e~~l~~~~~~~~~~~~~~~~~~~~~~t~npA~~l 322 (374)
T cd01317 245 --EDREALIEALKDGTIDAIASDHAPHTDEEKDLPFAEAPPGIIGLETALPLLWTLLVKGGLLTLPDLIRALSTNPAKIL 322 (374)
T ss_pred --HHHHHHHHHHhcCCceEEEcCCCCCCHHHccCCHhhCCCcHhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 124689999999999999999866543 111 11 222 222333579998664 569999988
Q ss_pred CCC
Q 017943 341 FAN 343 (363)
Q Consensus 341 f~~ 343 (363)
.++
T Consensus 323 gl~ 325 (374)
T cd01317 323 GLP 325 (374)
T ss_pred CCC
Confidence 765
No 93
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=96.05 E-value=0.091 Score=54.34 Aligned_cols=156 Identities=12% Similarity=0.020 Sum_probs=95.4
Q ss_pred ceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeec---CCCCChhhHHHHHhcCCCeeeEeccc----CHHHHHHHhc
Q 017943 189 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC---GEIPNKEEIQSMLDFLPQRIGHACCF----EEEEWRKLKS 261 (363)
Q Consensus 189 ~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~Ha---gE~~~~~~i~~~l~~g~~rigHg~~~----~~~~~~~l~~ 261 (363)
+++||.+..+. ..++..+..+++.|+++|+++.+|+ .|.+..+.+.++....+-.+-|-... .|+.++....
T Consensus 217 Ga~gfk~~~d~-g~t~~~L~~aLe~A~~~gv~VaiH~d~lnE~g~vE~~~aa~~grpih~~H~~Gaggghapd~~~~~~~ 295 (572)
T PRK13309 217 GVAGYKVHEDW-GATAAALRHALRVADEVDIQVAVHTDSLNECGYVEDTIDAFEGRTIHTFHTEGAGGGHAPDIIKVASQ 295 (572)
T ss_pred CcEEEEecCcC-CcCHHHHHHHHHHHHhcCCEEEEeCCccccchhHHHHHHHhCCCceeeeeccCcccCCchhHHHhcCC
Confidence 78888876432 3477889999999999999999994 55422222222221112222232211 3677777777
Q ss_pred CCCc-EEEcccccccccccc-----------------C--------C---CCccHHHHHHcCCCEEecCCCCCcc--CCC
Q 017943 262 SKIP-VEICLTSNIRTETIS-----------------S--------L---DIHHFVDLYKAQHPLVLCTDDSGVF--STS 310 (363)
Q Consensus 262 ~~i~-ve~cPtSN~~l~~~~-----------------~--------~---~~~pi~~l~~~Gv~v~l~TDd~~~~--~~~ 310 (363)
.+|. -..+||--...+.+. . + ...+.+.|+++|+.+++|||.|.+. +.+
T Consensus 296 ~~~~~~st~pt~p~~~~~~~e~~~m~m~~h~l~~~~~~D~~~a~srig~e~~~a~~~l~daGa~~~~gSD~pv~gr~~~~ 375 (572)
T PRK13309 296 TNVLPSSTNPTLPYGVNSQAELFDMIMVCHNLNPNVPADVAFAESRVRPETIAAENVLHDMGVISMFSSDSQAMGRVGEN 375 (572)
T ss_pred CCcccCCCCCCCCCcccchHhhhchhhhhccCCCCCCCChhHHHHhhCchhhcchhHHHhCCCEEEEcCCCCcccCCccc
Confidence 7753 244554332222111 0 1 2367889999999999999999864 356
Q ss_pred hHHHHHHHHHH----CC----------CCHHH-HHHHHHHHHHHcCCChH
Q 017943 311 VSREYDLAASA----FS----------LGRRE-MFQLAKSAVKFIFANGR 345 (363)
Q Consensus 311 l~~E~~~~~~~----~~----------l~~~~-l~~l~~na~~~sf~~~~ 345 (363)
.+.-++.+... -+ ++..+ |...+.|++.+.+.++.
T Consensus 376 p~~~iq~Av~rk~~~g~l~~~~~~~~~~~v~~aL~~yT~n~A~a~g~e~~ 425 (572)
T PRK13309 376 WLRAIQTADAMKAARGKLPEDAAGNDNFRVLRYVAKITINPAITQGVSHV 425 (572)
T ss_pred HHHHHHHHHHHHhccCCCCccCCCcccccHHHHHHHHhHHHHHHcCcccC
Confidence 66666666632 11 23334 66788999999887653
No 94
>TIGR01792 urease_alph urease, alpha subunit. This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor.
Probab=96.03 E-value=0.08 Score=54.66 Aligned_cols=154 Identities=12% Similarity=0.049 Sum_probs=94.7
Q ss_pred ceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChh-hHHHHHhcCCCeeeEec-------ccCHHHHHHHh
Q 017943 189 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKE-EIQSMLDFLPQRIGHAC-------CFEEEEWRKLK 260 (363)
Q Consensus 189 ~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~-~i~~~l~~g~~rigHg~-------~~~~~~~~~l~ 260 (363)
+++||.+.. .+..+++.+..+++.|+++|+++++|+ |+.++. .+.+.++.--.|--|-+ .-.|+.++...
T Consensus 212 Ga~gfK~h~-~y~~s~e~L~~al~~A~e~gv~V~iH~-ET~~E~g~ve~t~~a~g~rpIh~~H~~G~g~ghapdi~~~~~ 289 (567)
T TIGR01792 212 GACGLKVHE-DWGATPAAIDNALSVADEYDVQVAVHT-DTLNESGFVEDTIAAFKGRTIHTYHTEGAGGGHAPDIIVVVG 289 (567)
T ss_pred CCcEEEeCC-CCCCCHHHHHHHHHHHHHcCCEEEEeC-CCcccchHHHHHHHHHCCCcchhHhhcCCCCCcHHHHHHHcC
Confidence 567887653 445788999999999999999999999 877652 23334432122322221 11377888888
Q ss_pred cCCCc-EEEccccccccccccC--------------------CCCccH--------HHHHHcCCCEEecCCCCCccC---
Q 017943 261 SSKIP-VEICLTSNIRTETISS--------------------LDIHHF--------VDLYKAQHPLVLCTDDSGVFS--- 308 (363)
Q Consensus 261 ~~~i~-ve~cPtSN~~l~~~~~--------------------~~~~pi--------~~l~~~Gv~v~l~TDd~~~~~--- 308 (363)
+.+|. -..+||--...+.+.. +....| ..|.+.|+..+++||++++..
T Consensus 290 ~~~~~~~st~pt~p~~~~~~~e~~~m~~~~h~l~~~~~~d~~~a~~r~r~~t~~ae~~l~d~G~~~~~~sDs~~mgr~~~ 369 (567)
T TIGR01792 290 YNNILPSSTNPTLPYTVNTIDEHLDMLMVCHHLNPKIPEDVAFAESRIRKETIAAEDVLQDMGAISMISSDSQAMGRIGE 369 (567)
T ss_pred CCCcccCCCCCCCCCccCchhhhcCeEEEeccCCCCCcccchhhhhhccceeccccchhhhCCcEEEecCCchhhCcccc
Confidence 87763 2445553332222111 001111 246799999999999987753
Q ss_pred --CChHHHHHHHHHHCCC----C---HHH-----HHHHHHHHHHHcCCCh
Q 017943 309 --TSVSREYDLAASAFSL----G---RRE-----MFQLAKSAVKFIFANG 344 (363)
Q Consensus 309 --~~l~~E~~~~~~~~~l----~---~~~-----l~~l~~na~~~sf~~~ 344 (363)
..++++-..+.+..|. + ..+ |...+.|++.+.+.++
T Consensus 370 ~~~r~~q~a~k~~~~~g~~~~~~~~~~~~rl~r~L~~yT~n~A~a~g~~~ 419 (567)
T TIGR01792 370 VVTRCWQTADKMKKQRGPLPGDSPGNDNNRVKRYVAKYTINPAITHGISD 419 (567)
T ss_pred eeechHHHHHHHHHhcCCCcccccCChhhhHHHHHHHHhHHHHHHcCccc
Confidence 3555555555443333 1 111 7888999999998765
No 95
>PRK10425 DNase TatD; Provisional
Probab=95.90 E-value=1.5 Score=40.92 Aligned_cols=125 Identities=17% Similarity=0.157 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHh-cC---CCeeeEecccCHHHHHHHhcCCCcEEEcccccccccccc
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FL---PQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETIS 280 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~-~g---~~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~ 280 (363)
+.|....+.|+++++|+.+|+=+.. +.+.+.+. .. +..+-||+.=+.+.++.+.+.|..+.+.+..... .
T Consensus 108 ~vF~~ql~lA~~~~~Pv~iH~r~a~--~~~l~iL~~~~~~~~~~i~H~fsG~~~~~~~~l~~G~~~si~g~i~~~-~--- 181 (258)
T PRK10425 108 RAFVAQLAIAAELNMPVFMHCRDAH--ERFMALLEPWLDKLPGAVLHCFTGTREEMQACLARGLYIGITGWVCDE-R--- 181 (258)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCch--HHHHHHHHHhccCCCCeEEEecCCCHHHHHHHHHCCCEEEECceeecc-c---
Confidence 4477777889999999999996433 34445454 21 2457899887888999999999888876632110 0
Q ss_pred CCCCccHHHHHHcCC---CEEecCCCCCcc------------C--CChHHHHHHHHHHCCCCHHHHHHHH-HHHHH
Q 017943 281 SLDIHHFVDLYKAQH---PLVLCTDDSGVF------------S--TSVSREYDLAASAFSLGRREMFQLA-KSAVK 338 (363)
Q Consensus 281 ~~~~~pi~~l~~~Gv---~v~l~TDd~~~~------------~--~~l~~E~~~~~~~~~l~~~~l~~l~-~na~~ 338 (363)
....++++.+ .+ ++.+-||.|-+. + ..+..-+..+++..|++.+++.+.+ .|+.+
T Consensus 182 --~~~~~~~~~~-~ipldrlLlETDaP~l~P~~~~~~~~~~~n~P~~i~~v~~~iA~l~~~~~~~v~~~~~~N~~~ 254 (258)
T PRK10425 182 --RGLELRELLP-LIPAERLLLETDAPYLLPRDLTPKPASRRNEPAFLPHILQRIAHWRGEDAAWLAATTDANART 254 (258)
T ss_pred --ccHHHHHHHH-hCChHHEEEeccCCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1123444443 23 479999998542 1 3455556777777899999977554 55544
No 96
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=95.87 E-value=0.23 Score=46.88 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=95.2
Q ss_pred CCCceEEEecC-CCCCCCC--hhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHh-cCC-CeeeEeccc-------CH
Q 017943 186 RDLGVVGIDLS-GNPTKGE--WTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FLP-QRIGHACCF-------EE 253 (363)
Q Consensus 186 ~~~~vvGidl~-g~e~~~~--~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~-~g~-~rigHg~~~-------~~ 253 (363)
..+.++|+-+- +.+..++ ...+....+.|+..++|+.+|.||.... ..+.++ +++ +-|.||+.= ++
T Consensus 150 h~d~ivGlKvR~s~~~~g~~GitPl~la~~ia~~~klPlmvHigePp~~--~dEvlerL~~GDIitHcfngkpn~~l~~d 227 (386)
T COG3964 150 HRDVIVGLKVRVSTEDIGEYGITPLTLALRIANDLKLPLMVHIGEPPVL--MDEVLERLRRGDIITHCFNGKPNTILTDD 227 (386)
T ss_pred CcCcEEEEEEEeeeccccccCCchHHHHHHHHhhcCCceEEecCCCCcc--HHHHHHhccCCceeeeeccCCCCCccccc
Confidence 34468888763 2222221 2346666788889999999999995432 334444 453 889999852 11
Q ss_pred ----HHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCC-CEEecCCCCCcc--C---CChHHHHHHHHHHCC
Q 017943 254 ----EEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQH-PLVLCTDDSGVF--S---TSVSREYDLAASAFS 323 (363)
Q Consensus 254 ----~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv-~v~l~TDd~~~~--~---~~l~~E~~~~~~~~~ 323 (363)
..+++.+++||.+.+-- | ..++...-.+++...|+ |-+|+||=-+.. + .+|..-|... ...|
T Consensus 228 g~vr~~vrra~erGV~fD~gh------G-~asfsf~vAr~aia~GllP~~ISSDlh~~~~~n~Pv~dla~~mSKl-lalg 299 (386)
T COG3964 228 GVVRAEVRRARERGVIFDAGH------G-RASFSFNVARRAIANGLLPDIISSDLHTITKLNGPVYDLAWIMSKL-LALG 299 (386)
T ss_pred hhHHHHHHHHHhcceEEEccC------C-cceeeHHHHHHHHhcCCCcceeeccceeeeecCchHHHHHHHHHHH-HHcC
Confidence 36788899999886421 1 12233345678889996 789999965544 1 3555555444 2479
Q ss_pred CCHHHHH-HHHHHHHHHcCCC
Q 017943 324 LGRREMF-QLAKSAVKFIFAN 343 (363)
Q Consensus 324 l~~~~l~-~l~~na~~~sf~~ 343 (363)
++..++. .++.|.+...-++
T Consensus 300 mpl~~Vi~avT~npA~~i~l~ 320 (386)
T COG3964 300 MPLTDVINAVTHNPAVLIGLA 320 (386)
T ss_pred CcHHHHHHHHhcCHHHHhCcc
Confidence 9999955 5568887776655
No 97
>PRK13985 ureB urease subunit beta; Provisional
Probab=95.70 E-value=0.21 Score=51.27 Aligned_cols=155 Identities=12% Similarity=0.086 Sum_probs=100.4
Q ss_pred ceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEecccC-------HHHHHHHhc
Q 017943 189 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFE-------EEEWRKLKS 261 (363)
Q Consensus 189 ~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~~-------~~~~~~l~~ 261 (363)
+++||.+... +..++..+..+++.|+++|+++.+|+........+...++.-..|--|-++++ |+.++....
T Consensus 213 GA~GfK~~ed-~g~t~~~I~~aL~vA~~~dv~V~iHtdtlne~g~~E~t~aa~~gr~iH~~H~egaggghapdi~~~~~~ 291 (568)
T PRK13985 213 GAIGFKIHED-WGTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGE 291 (568)
T ss_pred CCEEEEECCc-cCCCHHHHHHHHHHHHHcCCEEEEeCCCCCCchhhHHHHHHhcCCeEEEEeccCCCccchhhHHHHcCC
Confidence 6888886543 23567889999999999999999999765533334444443345666666653 788888888
Q ss_pred CCCc-EEEccccccccccccC--------------------CCCccH--------HHHHHcCCCEEecCCCCCccC----
Q 017943 262 SKIP-VEICLTSNIRTETISS--------------------LDIHHF--------VDLYKAQHPLVLCTDDSGVFS---- 308 (363)
Q Consensus 262 ~~i~-ve~cPtSN~~l~~~~~--------------------~~~~pi--------~~l~~~Gv~v~l~TDd~~~~~---- 308 (363)
.+|. -..+||--...+.+.. +....| .-|.+.|+-..++||+.++..
T Consensus 292 ~nvlp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~ed~afa~srir~~tiaaed~l~d~G~~s~~~SDs~~mgr~ge~ 371 (568)
T PRK13985 292 HNILPASTNPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTLHDMGIFSITSSDSQAMGRVGEV 371 (568)
T ss_pred CCcccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhccccccccCchhhhCCcEEEEeccchhhCcccce
Confidence 8763 3455553332222111 011111 136789999999999998775
Q ss_pred -CChHHHHHHHHHHCC-C----------CHHH-HHHHHHHHHHHcCCCh
Q 017943 309 -TSVSREYDLAASAFS-L----------GRRE-MFQLAKSAVKFIFANG 344 (363)
Q Consensus 309 -~~l~~E~~~~~~~~~-l----------~~~~-l~~l~~na~~~sf~~~ 344 (363)
.-+++|...+.+..| + +.++ |...+.|++.+.++++
T Consensus 372 ~~r~~q~a~k~~~~~g~l~~~~~~~dnl~v~eAL~~yTin~A~A~G~e~ 420 (568)
T PRK13985 372 ITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISE 420 (568)
T ss_pred eeehHHHHHHHHHhcCCCCCccccccccCHHHHHHHHhHHHHHHcCccc
Confidence 356666655554232 3 3445 7778999999998865
No 98
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=95.58 E-value=0.31 Score=50.23 Aligned_cols=155 Identities=10% Similarity=0.046 Sum_probs=97.5
Q ss_pred ceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEecccC-------HHHHHHHhc
Q 017943 189 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFE-------EEEWRKLKS 261 (363)
Q Consensus 189 ~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~~-------~~~~~~l~~ 261 (363)
+++||-+..+ +..++..+..+++.|+++|+++.+|+.-......+...+..-..|--|-++.+ |+.++...+
T Consensus 213 GA~GfK~~eD-~g~t~~~i~~aL~~A~~~dv~VaiHadtlne~g~~E~t~aa~~gr~iH~~H~egaggghapdi~~~~~~ 291 (567)
T cd00375 213 GACGLKLHED-WGATPAAIDTCLSVADEYDVQVAIHTDTLNESGFVEDTIAAIKGRTIHTYHTEGAGGGHAPDIIKVAGH 291 (567)
T ss_pred CCEEEEecCC-CCCCHHHHHHHHHHHHhhCCEEEEECCCCCcchHHHHHHHHhcCCeEEEEecCCCCcccchHHHHhcCC
Confidence 6788886632 23467889999999999999999999643322223333433335666666552 678888888
Q ss_pred CCCc-EEEccccccccccccC--------------------CCCccH--------HHHHHcCCCEEecCCCCCccC----
Q 017943 262 SKIP-VEICLTSNIRTETISS--------------------LDIHHF--------VDLYKAQHPLVLCTDDSGVFS---- 308 (363)
Q Consensus 262 ~~i~-ve~cPtSN~~l~~~~~--------------------~~~~pi--------~~l~~~Gv~v~l~TDd~~~~~---- 308 (363)
.+|. -..+||--...+.+.. +....| .-|.+.|+-..++||+.++..
T Consensus 292 ~nvlp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~~d~~fa~srir~~ti~ae~~l~d~G~~s~~~sDs~~mgr~ge~ 371 (567)
T cd00375 292 PNVLPSSTNPTRPFTVNTLDEHLDMLMVCHHLDPNIPEDVAFAESRIRAETIAAEDVLHDLGAISIMSSDSQAMGRVGEV 371 (567)
T ss_pred CCcccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhccchhhccchhhhccCcEEEEccchhhcCcccee
Confidence 7763 2445553332222111 011111 235789999999999987765
Q ss_pred -CChHHHHHHHHHHCCCCHHH------------HHHHHHHHHHHcCCCh
Q 017943 309 -TSVSREYDLAASAFSLGRRE------------MFQLAKSAVKFIFANG 344 (363)
Q Consensus 309 -~~l~~E~~~~~~~~~l~~~~------------l~~l~~na~~~sf~~~ 344 (363)
..++++-..+.+..|..+.+ +...+.|++.+.+.++
T Consensus 372 ~~r~~q~a~k~~~~~g~~~~~~~~~~n~r~~~~L~~~Tin~A~alG~~~ 420 (567)
T cd00375 372 ILRTWQTAHKMKAQRGPLPEDSGDADNFRVKRYIAKYTINPAIAHGISH 420 (567)
T ss_pred eechHHHHHHHHHhcCCCCcccccCchHHHHHHHHHhhHHHHHHcCccc
Confidence 35556655555545644322 6678899999888754
No 99
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=95.57 E-value=0.67 Score=44.98 Aligned_cols=168 Identities=13% Similarity=0.052 Sum_probs=90.4
Q ss_pred CCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C--CceeeecCCCCCh-
Q 017943 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G--LQITLHCGEIPNK- 231 (363)
Q Consensus 156 ~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~-g--l~~~~HagE~~~~- 231 (363)
.|+.+...+...-..+++...+.++.+.++..+.|.=.|..|. ..|....+.+...++. + +++-+|+..+.+-
T Consensus 126 ~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~---~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla 202 (333)
T TIGR03217 126 LGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGA---MLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLA 202 (333)
T ss_pred cCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCC---CCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchH
Confidence 3555443333333356777777777777765443433455553 4577888888887654 4 8888898776653
Q ss_pred -hhHHHHHhcCCCeeeEec---------ccCHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecC
Q 017943 232 -EEIQSMLDFLPQRIGHAC---------CFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCT 301 (363)
Q Consensus 232 -~~i~~~l~~g~~rigHg~---------~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~T 301 (363)
.+...+++.|+++|.=.+ .-.+.++..+.+.|+..-+ |+ ..+.+....-++.+++. |+.+-.
T Consensus 203 ~ANslaAi~aGa~~iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~~tgi----dl--~~l~~~a~~~v~p~~~~--~~~~~~ 274 (333)
T TIGR03217 203 VANSIAAIEAGATRIDASLRGLGAGAGNAPLEVFVAVLDRLGWNTGC----DL--FKLMDAAEDIVRPLMDR--PVRVDR 274 (333)
T ss_pred HHHHHHHHHhCCCEEEeecccccccccCccHHHHHHHHHhcCCCCCc----CH--HHHHHHHHHHHHhhccC--CCcCCh
Confidence 355677888999874322 1234566666655543111 11 10000011122223333 233333
Q ss_pred CC--CCccC--CChHHHHHHHHHHCCCCHHHH-HHHHH
Q 017943 302 DD--SGVFS--TSVSREYDLAASAFSLGRREM-FQLAK 334 (363)
Q Consensus 302 Dd--~~~~~--~~l~~E~~~~~~~~~l~~~~l-~~l~~ 334 (363)
|. .|+.+ .+...-.+.+++.+|++..++ ..+.+
T Consensus 275 ~~~~~Gyag~~s~~~~~~~~~~~~~~~~~~~i~~~~~~ 312 (333)
T TIGR03217 275 ETLTLGYAGVYSSFLLHAERAAAKYGVDARDILVELGR 312 (333)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHhCCCHHHHHHHHhc
Confidence 32 23333 344444566667899999984 45544
No 100
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=95.53 E-value=0.086 Score=54.66 Aligned_cols=148 Identities=17% Similarity=0.183 Sum_probs=83.2
Q ss_pred CceEEEecC-CCCC-CCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEecccCHHHHHHHhcCCCc
Q 017943 188 LGVVGIDLS-GNPT-KGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIP 265 (363)
Q Consensus 188 ~~vvGidl~-g~e~-~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~~~~~~~~l~~~~i~ 265 (363)
++|+|+... .-+. ........+.++.+++.|..+..|+.... ...+...+..| ....|.....++.+ .=.+.|..
T Consensus 143 ~~V~glke~m~~~~v~~~d~~~l~~i~~a~~~g~~I~gHap~l~-~~eL~~~~~aG-i~~dHe~~s~~ea~-e~~~~Gm~ 219 (552)
T TIGR01178 143 DEVLGLAEVMDYPGVINADIEMLNKINSARKRNKVIDGHCPGLS-GKLLNKYISAG-ISNDHESTSIEEAR-EKLRLGMK 219 (552)
T ss_pred CCccEEEEEecchhhcCCCHHHHHHHHHHHhCCCEEEecCCCCC-HHHHHHHHHcC-CCCCcCcCCHHHHH-HHHHCCCE
Confidence 468887754 1121 11223344444788899999999985332 23333333333 44677654333333 34456777
Q ss_pred EEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCc---cC-CChHHHHHHHHHHCCCCHHHHHH-HHHHHHHHc
Q 017943 266 VEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGV---FS-TSVSREYDLAASAFSLGRREMFQ-LAKSAVKFI 340 (363)
Q Consensus 266 ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~---~~-~~l~~E~~~~~~~~~l~~~~l~~-l~~na~~~s 340 (363)
+.+.-.|-..- .. ...|+... ..+.++++|||+... +. ..|..-++.+.. .|+++.+..+ .+.|++++.
T Consensus 220 ~~ir~gs~~~n--~~--~~~~~~~~-~~~~~~~l~TD~~~~~~~~~~g~l~~~v~~ai~-~g~~~~~Al~maT~npA~~l 293 (552)
T TIGR01178 220 LMIREGSAAKN--LE--ALHPLINE-KNCRSLMLCTDDRHVNDILNEGHINHIVRRAIE-HGVDPFDALQMASINPAEHF 293 (552)
T ss_pred EEEeCCccccC--HH--HHHHHHhh-cCCceEEEEeCCCChhHHHhcCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHc
Confidence 76644432210 00 01222211 467899999995322 22 456666777654 7999999655 568999998
Q ss_pred CCCh
Q 017943 341 FANG 344 (363)
Q Consensus 341 f~~~ 344 (363)
-+++
T Consensus 294 gl~~ 297 (552)
T TIGR01178 294 GIDV 297 (552)
T ss_pred CCCC
Confidence 7753
No 101
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=95.47 E-value=0.73 Score=44.76 Aligned_cols=106 Identities=14% Similarity=-0.015 Sum_probs=66.4
Q ss_pred CCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc---CCceeeecCCCCCh-
Q 017943 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ---GLQITLHCGEIPNK- 231 (363)
Q Consensus 156 ~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~---gl~~~~HagE~~~~- 231 (363)
.|+.+...++..-..+++...+.++.+.++..+.|.=.|..| ...|......+...++. ++++-+|+..+.+-
T Consensus 127 ~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G---~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla 203 (337)
T PRK08195 127 LGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAG---ALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLG 203 (337)
T ss_pred CCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCC---CCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchH
Confidence 455555444444345677777777777776544333345555 24578888888887764 68899998877654
Q ss_pred -hhHHHHHhcCCCeeeEec---------ccCHHHHHHHhcCCC
Q 017943 232 -EEIQSMLDFLPQRIGHAC---------CFEEEEWRKLKSSKI 264 (363)
Q Consensus 232 -~~i~~~l~~g~~rigHg~---------~~~~~~~~~l~~~~i 264 (363)
.+...+++.|+++|.=.+ ...+.++..+.+.|+
T Consensus 204 ~ANslaAi~aGa~~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~ 246 (337)
T PRK08195 204 VANSLAAVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLDRMGW 246 (337)
T ss_pred HHHHHHHHHhCCCEEEecChhhcccccCccHHHHHHHHHhcCC
Confidence 455677888998864222 223556666665554
No 102
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=95.25 E-value=0.029 Score=51.75 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=55.2
Q ss_pred CCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCc---cCCChHHHHHHHHHHCCCCHHHHH-HHHHHHHH
Q 017943 263 KIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGV---FSTSVSREYDLAASAFSLGRREMF-QLAKSAVK 338 (363)
Q Consensus 263 ~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~---~~~~l~~E~~~~~~~~~l~~~~l~-~l~~na~~ 338 (363)
++.+..||..+.... ....+++.++++|++++++||.+.. ...++..+.......+|++++++. .++.|+++
T Consensus 209 ~~~~~~~p~~~~~~~----~~~~~~~~l~~~Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~~~~gl~~~~al~~~T~~pA~ 284 (304)
T PF13147_consen 209 GIRFKVLPPLRLDLR----EDRAALRELLEAGVPVALGSDHAPSSTEGSGDLLHEAMRLAVRAGLSPEEALRAATSNPAR 284 (304)
T ss_dssp GGGGEESSCHHHHTH----HHHHHHHHHHHTTSSEEEEE-BBTTTTTCTTTHHHHHHHHHHHTSSTHHHHHHHHTHHHHH
T ss_pred CceeeeCCCccccch----hhhHHHHHHHhCCCeEEEEcCCcccccccccccchhhhhHHhhcCCCHHHHHHHHHHHHHH
Confidence 888888888764311 1235788999999999999998764 445555655555566999999855 55699998
Q ss_pred HcCCC
Q 017943 339 FIFAN 343 (363)
Q Consensus 339 ~sf~~ 343 (363)
..-++
T Consensus 285 ~lgl~ 289 (304)
T PF13147_consen 285 ILGLD 289 (304)
T ss_dssp HTTBT
T ss_pred HhCCC
Confidence 87664
No 103
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=95.22 E-value=0.13 Score=47.83 Aligned_cols=123 Identities=21% Similarity=0.278 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHh-cCC---CeeeEecccCHHHHHHHhcCCCcEEEcccccccccccc
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FLP---QRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETIS 280 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~-~g~---~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~ 280 (363)
+.|...+++|+++++|+.+|+-- ..+.+.+.+. .+. .-+-|++.-+.+.++.+.+.|..+.+.+..+...
T Consensus 111 ~vF~~ql~lA~~~~~pv~iH~r~--a~~~~l~il~~~~~~~~~~i~H~f~g~~~~~~~~~~~g~~~S~~~~~~~~~---- 184 (255)
T PF01026_consen 111 EVFERQLELAKELNLPVSIHCRK--AHEELLEILKEYGPPNLRVIFHCFSGSPEEAKKFLDLGCYFSFSGAITFKN---- 184 (255)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEES--HHHHHHHHHHHTTGGTSEEEETT--S-HHHHHHHHHTTEEEEEEGGGGSTT----
T ss_pred HHHHHHHHHHHHhCCcEEEecCC--cHHHHHHHHHhccccceeEEEecCCCCHHHHHHHHhcCceEEecccccccc----
Confidence 45788888999999999999842 1234455554 442 3478998888888888889999999888654321
Q ss_pred CCCCccHHHHHHcCC---CEEecCCCCCcc---------C-CChHHHHHHHHHHCCCCHHHHHHHH-HHHH
Q 017943 281 SLDIHHFVDLYKAQH---PLVLCTDDSGVF---------S-TSVSREYDLAASAFSLGRREMFQLA-KSAV 337 (363)
Q Consensus 281 ~~~~~pi~~l~~~Gv---~v~l~TDd~~~~---------~-~~l~~E~~~~~~~~~l~~~~l~~l~-~na~ 337 (363)
..-.+++.+. + ++.|-||.|-.. . .++.+-+..+++.-+++.+++.+.+ .|+.
T Consensus 185 ---~~~~~~~~~~-ip~drillETD~P~~~~~~~~~~~~~p~~i~~~~~~la~~~~~~~e~~~~~~~~N~~ 251 (255)
T PF01026_consen 185 ---SKKVRELIKA-IPLDRILLETDAPYLAPDPYRGKPNEPSNIPKVAQALAEIKGISLEELAQIIYENAK 251 (255)
T ss_dssp ---SHHHHHHHHH-S-GGGEEEE-BTTSSECTTSTTSE--GGGHHHHHHHHHHHHTSTHHHHHHHHHHHHH
T ss_pred ---cHHHHHHHhc-CChhhEEEcCCCCcCCccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1224444432 3 489999987431 1 4566677777787899999988776 4443
No 104
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=94.97 E-value=2.5 Score=39.43 Aligned_cols=125 Identities=19% Similarity=0.202 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHh-cC--CCeeeEecccCHHHHHHHhcCCCcEEEccccccccccccC
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FL--PQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISS 281 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~-~g--~~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~ 281 (363)
+.|+.-+++|++.++|+.+|+=+.. +.+.+.+. .+ ..-|-||+.=+.+..+.+.+.|..+.+.++.+..-
T Consensus 112 ~~F~~ql~lA~~~~lPviIH~R~A~--~d~~~iL~~~~~~~~gi~HcFsGs~e~a~~~~d~G~yisisG~itfk~----- 184 (256)
T COG0084 112 EVFEAQLELAKELNLPVIIHTRDAH--EDTLEILKEEGAPVGGVLHCFSGSAEEARKLLDLGFYISISGIVTFKN----- 184 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccH--HHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHHcCeEEEECceeecCC-----
Confidence 4577788889999999999995432 34555554 44 34488999888899999999998888877765432
Q ss_pred CCCccHHHHHHcCCC---EEecCCCCCccC----------CChHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 017943 282 LDIHHFVDLYKAQHP---LVLCTDDSGVFS----------TSVSREYDLAASAFSLGRREMFQLAKSAVKF 339 (363)
Q Consensus 282 ~~~~pi~~l~~~Gv~---v~l~TDd~~~~~----------~~l~~E~~~~~~~~~l~~~~l~~l~~na~~~ 339 (363)
...+++..+. +| +-+=||.|-+.. ..+..-...+++.-|++.+++.+.+.+-++.
T Consensus 185 --a~~~~ev~~~-iPldrLL~ETDsPyl~P~p~rGkrNeP~~v~~v~~~iAelk~~~~eeva~~t~~N~~~ 252 (256)
T COG0084 185 --AEKLREVARE-LPLDRLLLETDAPYLAPVPYRGKRNEPAYVRHVAEKLAELKGISAEEVAEITTENAKR 252 (256)
T ss_pred --cHHHHHHHHh-CCHhHeEeccCCCCCCCcCCCCCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1233433322 43 689999986632 2333445666666799999988776444433
No 105
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=94.90 E-value=1.7 Score=42.45 Aligned_cols=129 Identities=14% Similarity=0.116 Sum_probs=75.5
Q ss_pred hhhHHHHHHHHHHcCCceeeecCCCCCh-hhHHHHHhcCCCeeeEecccCH-----------HHHHHHhcCCCcEEEc-c
Q 017943 204 WTTFLPALKFAREQGLQITLHCGEIPNK-EEIQSMLDFLPQRIGHACCFEE-----------EEWRKLKSSKIPVEIC-L 270 (363)
Q Consensus 204 ~~~~~~~~~~A~~~gl~~~~HagE~~~~-~~i~~~l~~g~~rigHg~~~~~-----------~~~~~l~~~~i~ve~c-P 270 (363)
+..+......+ +.|+++.+|++++... ..+...+..| +.+-|++.-.+ +.+....+.|+.+.++ .
T Consensus 165 ~~~~~~~l~~~-~~~~pv~vH~~~a~~~~~~i~~~~~~g-~~~~H~fng~~~~~~r~~g~~~~~~~~~l~~G~i~d~~hg 242 (365)
T TIGR03583 165 PLEIAKQIQQE-NLELPLMVHIGSAPPELDEILALMEKG-DVLTHCFNGKPNGILRETGEVKPSVLEAYNRGVILDVGHG 242 (365)
T ss_pred HHHHHHHHHHh-cCCCcEEEEeCCCccCHHHHHHHhcCC-CeeeeeecCCCCCCCCCcchHHHHHHHHHhCeEEEEeCCC
Confidence 44455444444 6899999999987632 3344444446 57899875432 4455556667666543 1
Q ss_pred ccccccccccCCCCccHHHHHHcC-CCEEecCCCCCc---cC--CChHHHHHHHHHHCCCCHHHHHH-HHHHHHHHcCCC
Q 017943 271 TSNIRTETISSLDIHHFVDLYKAQ-HPLVLCTDDSGV---FS--TSVSREYDLAASAFSLGRREMFQ-LAKSAVKFIFAN 343 (363)
Q Consensus 271 tSN~~l~~~~~~~~~pi~~l~~~G-v~v~l~TDd~~~---~~--~~l~~E~~~~~~~~~l~~~~l~~-l~~na~~~sf~~ 343 (363)
...... .-...+...+ +.++++||-+.- .+ .+|..-++.++ ..|++++++.+ .+.|+++...++
T Consensus 243 ~~~~~~--------~~~~~~~~~~~~~~td~~d~~~~~~~~gp~~~l~~~~~~~~-~~g~~~~ea~~~~t~npa~~~gl~ 313 (365)
T TIGR03583 243 TASFSF--------HVAEKAKRAGIFPDTISTDIYIRNRINGPVYSLATVMSKFL-ALGYSLEEVIEKVTKNAAEILKLT 313 (365)
T ss_pred CCCchH--------HHHHHHHhCCCCCcccccccccCCCccCccccHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCCC
Confidence 111000 0112333344 346666765322 12 25788888877 47999999665 568999888775
No 106
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=94.77 E-value=2.2 Score=39.95 Aligned_cols=132 Identities=15% Similarity=0.035 Sum_probs=84.2
Q ss_pred HHHHHHhcCCeEEEEeeCCCc-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC
Q 017943 81 VVEDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK 157 (363)
Q Consensus 81 ~~~~~~~~gV~y~E~r~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 157 (363)
-++.+.+.|+..+.+.++.+. + ...+.+.++.++.+.+.++.+++ .|
T Consensus 76 di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~------------------------------~G 125 (262)
T cd07948 76 DARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKS------------------------------KG 125 (262)
T ss_pred HHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------CC
Confidence 355566779988777665332 1 23467888888888888877643 45
Q ss_pred cEEEEEEE-eeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCCh--hh
Q 017943 158 IYVRLLLS-IDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNK--EE 233 (363)
Q Consensus 158 i~~~li~~-~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~-~gl~~~~HagE~~~~--~~ 233 (363)
+.+.+.+. ..| .+++...+.++.+.+...+.+.=-|..| ...|.....++...++ .++++.+|+..+.+- .+
T Consensus 126 ~~v~~~~eda~r-~~~~~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an 201 (262)
T cd07948 126 IEVRFSSEDSFR-SDLVDLLRVYRAVDKLGVNRVGIADTVG---IATPRQVYELVRTLRGVVSCDIEFHGHNDTGCAIAN 201 (262)
T ss_pred CeEEEEEEeeCC-CCHHHHHHHHHHHHHcCCCEEEECCcCC---CCCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHH
Confidence 66665543 444 4567777777777666433232234444 3456777777776655 478888888766653 45
Q ss_pred HHHHHhcCCCeee
Q 017943 234 IQSMLDFLPQRIG 246 (363)
Q Consensus 234 i~~~l~~g~~rig 246 (363)
...+++.|++++.
T Consensus 202 ~~~a~~aG~~~vd 214 (262)
T cd07948 202 AYAALEAGATHID 214 (262)
T ss_pred HHHHHHhCCCEEE
Confidence 5677888988754
No 107
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.74 E-value=1.3 Score=41.92 Aligned_cols=189 Identities=7% Similarity=-0.016 Sum_probs=119.2
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHH-HHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeee-Ee
Q 017943 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG-HA 248 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~-~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rig-Hg 248 (363)
+.+.+...++-|.+.+.+.|+.+.-....+ ...+.+.. +...|++..+|+.+|..-..+.+.+..+++.|-+.+= =|
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~~~~-~g~~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~~ai~~GftSVM~Dg 105 (284)
T PRK12857 27 NMEIVQAIVAAAEAEKSPVIIQASQGAIKY-AGIEYISAMVRTAAEKASVPVALHLDHGTDFEQVMKCIRNGFTSVMIDG 105 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEechhHhhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEEeC
Confidence 457888889988888877777765432222 23344555 4556888999999999887777888889998866531 12
Q ss_pred cccC--------HHHHHHHhcCCCcEEEcccccc--ccc---c-ccCCCCcc--HHHHHH-cCC---CEEecCCC-----
Q 017943 249 CCFE--------EEEWRKLKSSKIPVEICLTSNI--RTE---T-ISSLDIHH--FVDLYK-AQH---PLVLCTDD----- 303 (363)
Q Consensus 249 ~~~~--------~~~~~~l~~~~i~ve~cPtSN~--~l~---~-~~~~~~~p--i~~l~~-~Gv---~v~l~TDd----- 303 (363)
..++ .+.+++....|+.||.-.-.=- .-+ . -...-+.| ..++.+ -|+ -|++||==
T Consensus 106 S~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~ 185 (284)
T PRK12857 106 SKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKG 185 (284)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCC
Confidence 2232 3567777889999975332100 000 0 00111234 456654 365 36777632
Q ss_pred CCccCCChHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhh
Q 017943 304 SGVFSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEKK 360 (363)
Q Consensus 304 ~~~~~~~l~~E~~~~~~~-------~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~~ 360 (363)
..-.+.++.+|++..... -|++.++++++..+++.-.=+.-+.|..+.+.+.++.++
T Consensus 186 ~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~~~~ 249 (284)
T PRK12857 186 EPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNIREAFVARLREVLEK 249 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHh
Confidence 122335666677665431 367888899999999888888888888877777776543
No 108
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=94.74 E-value=1.6 Score=41.25 Aligned_cols=187 Identities=11% Similarity=0.032 Sum_probs=119.3
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHH-HHHHHcCCceeeecCCCCChhhHHHHHhcCCCeee-E
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPAL-KFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG-H 247 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~-~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rig-H 247 (363)
.+.+.+...++-|.+.+.+.|+.+.-....+ .+.+.+..+. ..|++..+|+.+|+.-..+.+.+..+++.|-+.+= =
T Consensus 21 ~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~-~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD 99 (276)
T cd00947 21 NNLETLKAILEAAEETRSPVILQISEGAIKY-AGLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGFSSVMID 99 (276)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEeC
Confidence 3457888889988888877666654332222 3345555554 45777899999999888778888899998866541 1
Q ss_pred ecccC--------HHHHHHHhcCCCcEEEcccccccccccc-------CCCCcc--HHHHHHc-CC---CEEecCCCCC-
Q 017943 248 ACCFE--------EEEWRKLKSSKIPVEICLTSNIRTETIS-------SLDIHH--FVDLYKA-QH---PLVLCTDDSG- 305 (363)
Q Consensus 248 g~~~~--------~~~~~~l~~~~i~ve~cPtSN~~l~~~~-------~~~~~p--i~~l~~~-Gv---~v~l~TDd~~- 305 (363)
|..++ .+..++....|+.||..+-. +++.. ..-..| ..++.+. |+ -|++||==..
T Consensus 100 ~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~---i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y 176 (276)
T cd00947 100 GSHLPFEENVAKTKEVVELAHAYGVSVEAELGR---IGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAY 176 (276)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEee---ecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCcccccc
Confidence 22222 35678888899999866542 11111 112345 5666654 65 3566664211
Q ss_pred -----ccCCChHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhh
Q 017943 306 -----VFSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEKK 360 (363)
Q Consensus 306 -----~~~~~l~~E~~~~~~~-------~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~~ 360 (363)
-.+.++..++...... -|++.+++.++..+++.-.=+.-+.+....+.+.+..++
T Consensus 177 ~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~ 243 (276)
T cd00947 177 KGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRLAFTAALREYLAE 243 (276)
T ss_pred CCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHHHh
Confidence 2234556666665431 367888899999888888777777777777776666543
No 109
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=94.68 E-value=2.2 Score=39.69 Aligned_cols=132 Identities=11% Similarity=0.067 Sum_probs=82.6
Q ss_pred HHHHHHhcCCeEEEEeeCCCc-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC
Q 017943 81 VVEDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK 157 (363)
Q Consensus 81 ~~~~~~~~gV~y~E~r~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 157 (363)
-++.+...|+..+.+-++... + ..-+.+.++.++.+.+.++.+++ .|
T Consensus 74 ~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~------------------------------~G 123 (259)
T cd07939 74 DIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKD------------------------------RG 123 (259)
T ss_pred HHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------CC
Confidence 345566778887777654332 1 23467888888888888887643 35
Q ss_pred cEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCCh--hhH
Q 017943 158 IYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNK--EEI 234 (363)
Q Consensus 158 i~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~-~gl~~~~HagE~~~~--~~i 234 (363)
+.+.+-....-..+++...+.++.+.+...+.|.=.|..| ...|..+...+...++ .++++-+|+.-+.+- .+.
T Consensus 124 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~An~ 200 (259)
T cd07939 124 LFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVG---ILDPFTTYELIRRLRAATDLPLEFHAHNDLGLATANT 200 (259)
T ss_pred CeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCC---CCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHH
Confidence 5554333222224567777777777666433222234444 3467788888887664 468888888766553 355
Q ss_pred HHHHhcCCCee
Q 017943 235 QSMLDFLPQRI 245 (363)
Q Consensus 235 ~~~l~~g~~ri 245 (363)
..+++.|++++
T Consensus 201 laAi~aG~~~v 211 (259)
T cd07939 201 LAAVRAGATHV 211 (259)
T ss_pred HHHHHhCCCEE
Confidence 67788898876
No 110
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=94.63 E-value=0.57 Score=48.36 Aligned_cols=155 Identities=14% Similarity=0.125 Sum_probs=95.8
Q ss_pred ceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEeccc-------CHHHHHHHhc
Q 017943 189 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF-------EEEEWRKLKS 261 (363)
Q Consensus 189 ~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~-------~~~~~~~l~~ 261 (363)
+++||-+..+ +..++..+..+++.|+++|+++.+|+........+...++.-..|--|-+++ .|+.++.+.+
T Consensus 213 GA~GfKi~ed-~g~t~~~i~~aL~~A~~~dv~VaiHadtlne~g~~E~t~~a~~gr~iH~~H~egaggghapd~l~~~~~ 291 (569)
T PRK13308 213 GACGLKIHED-WGAMPAAIDTCLEVADEYDFQVQLHTDTLNESGFVEDTLAAIGGRTIHMYHTEGAGGGHAPDIIRVVGE 291 (569)
T ss_pred CCCEEeecCC-CCCCHHHHHHHHHHHHhcCCEEEEeCCCcCcchHHHHHHHHhcCCeEEEEeccCCccCchhHHHHHhCC
Confidence 6788887643 2346788999999999999999999965433223333333322455565554 2788888888
Q ss_pred CCCcE-EEccccccccccccC--------------------CCCccH--------HHHHHcCCCEEecCCCCCccC--CC
Q 017943 262 SKIPV-EICLTSNIRTETISS--------------------LDIHHF--------VDLYKAQHPLVLCTDDSGVFS--TS 310 (363)
Q Consensus 262 ~~i~v-e~cPtSN~~l~~~~~--------------------~~~~pi--------~~l~~~Gv~v~l~TDd~~~~~--~~ 310 (363)
.+|.- ..+||--...+.+.. +....| .-|.+.|+-..++||+.++.. -.
T Consensus 292 ~n~lp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~~d~afa~srir~~ti~ae~~l~d~g~~s~~~sds~~mgr~~e~ 371 (569)
T PRK13308 292 PHCLPSSTNPTNPYTVNTFDEHLDMTMVCHHLNPDVPEDVAFAESRIRAQTIAAEDVLHDIGAISMLGSDSQGMGRIAEV 371 (569)
T ss_pred CCccCCCCCCCCCCccCchhhhcCeEEEecCCCCCCcchhhhhhhhccceeeccCchhhcCCcEEEEecchHHHhHHHHH
Confidence 88633 455553332222111 011111 135789999999999998876 23
Q ss_pred hHHHHHHHHHH---C-CCCHHH------------HHHHHHHHHHHcCCCh
Q 017943 311 VSREYDLAASA---F-SLGRRE------------MFQLAKSAVKFIFANG 344 (363)
Q Consensus 311 l~~E~~~~~~~---~-~l~~~~------------l~~l~~na~~~sf~~~ 344 (363)
+..-++.+.+. . .++.++ +...+.|++.+.+++.
T Consensus 372 i~r~~q~a~~~~~~~g~l~~~~~~~~dn~rv~r~L~~~T~npA~alGi~~ 421 (569)
T PRK13308 372 IARTWQLASKMKDQRGPLPEDRGTFADNARIKRYIAKYTINPAITFGIDD 421 (569)
T ss_pred HHHHHHHHHHHhhcCCCCCcccccCCchhhhhHHHHHHhHHHHHHcCCCC
Confidence 33334443331 2 344443 7788899999988764
No 111
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=94.59 E-value=0.96 Score=42.83 Aligned_cols=186 Identities=10% Similarity=0.000 Sum_probs=116.5
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHH-HHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeee-E
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPA-LKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG-H 247 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~-~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rig-H 247 (363)
.+.+.+...++-|.+.+.+.|+.+.-....+ ...+.+..+ ...|++..+|+.+|..-..+.+.+..++++|-+.+= =
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~~~~~~~~-~g~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~D 104 (284)
T PRK09195 26 HNLETMQVVVETAAELHSPVIIAGTPGTFSY-AGTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRSGVRSVMID 104 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcChhHHhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEeC
Confidence 3568888899999888877777665432222 233445544 446888999999999887778888899998866541 1
Q ss_pred eccc--------CHHHHHHHhcCCCcEEEccccccccccccC---------CCCcc--HHHHHH-cCC---CEEecCCCC
Q 017943 248 ACCF--------EEEEWRKLKSSKIPVEICLTSNIRTETISS---------LDIHH--FVDLYK-AQH---PLVLCTDDS 304 (363)
Q Consensus 248 g~~~--------~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~---------~~~~p--i~~l~~-~Gv---~v~l~TDd~ 304 (363)
|..+ +.+..++....|+.||--.-. +++..+ .-..| ..+|.+ -|| -|++||=-.
T Consensus 105 gS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~---vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG 181 (284)
T PRK09195 105 GSHLPFAQNISLVKEVVDFCHRFDVSVEAELGR---LGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHG 181 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEec---ccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCcccc
Confidence 2222 235677888889998753321 111000 11233 456665 466 356666422
Q ss_pred Cc-----cCCChHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 017943 305 GV-----FSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 359 (363)
Q Consensus 305 ~~-----~~~~l~~E~~~~~~~-------~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~ 359 (363)
.+ .+.++..+++..... -|++.++++++..+++.-.=+.-+.+..+.+.+.+..+
T Consensus 182 ~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 248 (284)
T PRK09195 182 MYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVATELKIAFSQALKNYLT 248 (284)
T ss_pred ccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 21 234566666655431 36788888888888888877777777777666666544
No 112
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=94.42 E-value=3 Score=39.56 Aligned_cols=186 Identities=13% Similarity=0.076 Sum_probs=103.4
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCcc-----chHHHHhhcCCCHHHHHHhhhHH-----HhhcCCHHHHHHHHHHHHHHHH
Q 017943 17 NGSIRDSTLLELARVLGEKGVIVFS-----DVEHVIMKSDRSLHEVFKLFDLI-----HVLTTDHATVTRITQEVVEDFA 86 (363)
Q Consensus 17 ~Gsi~~~~l~~la~~~~~~~~~~~~-----~~~~~~~~~~~~l~~f~~~f~~~-----~~~~~~~e~~~~~~~~~~~~~~ 86 (363)
.-.++.+.-.++++.+.+-|+.... +++ +++. ..+-.+.+...... ..+..+.+++ +.+.
T Consensus 20 ~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~-~~p~-~~d~~e~~~~l~~~~~~~~~~l~~~~~~i--------e~A~ 89 (287)
T PRK05692 20 KRFIPTADKIALIDRLSAAGLSYIEVASFVSPK-WVPQ-MADAAEVMAGIQRRPGVTYAALTPNLKGL--------EAAL 89 (287)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcc-cccc-cccHHHHHHhhhccCCCeEEEEecCHHHH--------HHHH
Confidence 4458888889999887777764311 100 0000 01112222222110 1112233443 5556
Q ss_pred hcCCeEEEEeeCCCc-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEE
Q 017943 87 SENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLL 163 (363)
Q Consensus 87 ~~gV~y~E~r~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li 163 (363)
+.|+..+.+.++... + ...+.+.+++++.+.+.++.+++ .|+.+...
T Consensus 90 ~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~------------------------------~g~~v~~~ 139 (287)
T PRK05692 90 AAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQ------------------------------AGVRVRGY 139 (287)
T ss_pred HcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------cCCEEEEE
Confidence 778988877765432 2 23467888888888888877643 34444432
Q ss_pred EE--eeC----CCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C-CceeeecCCCCCh--hh
Q 017943 164 LS--IDR----RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G-LQITLHCGEIPNK--EE 233 (363)
Q Consensus 164 ~~--~~r----~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~-g-l~~~~HagE~~~~--~~ 233 (363)
++ +.- ..+++...+.++.+.+. ++..|.+...-....|.....+++..++. + +++.+|+..+.+- .+
T Consensus 140 i~~~~~~~~~~~~~~~~~~~~~~~~~~~---G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN 216 (287)
T PRK05692 140 VSCVLGCPYEGEVPPEAVADVAERLFAL---GCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALAN 216 (287)
T ss_pred EEEEecCCCCCCCCHHHHHHHHHHHHHc---CCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHH
Confidence 22 211 13456666777776665 33344333211124677787777776653 4 7888888766654 45
Q ss_pred HHHHHhcCCCee
Q 017943 234 IQSMLDFLPQRI 245 (363)
Q Consensus 234 i~~~l~~g~~ri 245 (363)
...+++.|++++
T Consensus 217 ~laA~~aG~~~i 228 (287)
T PRK05692 217 IYASLEEGITVF 228 (287)
T ss_pred HHHHHHhCCCEE
Confidence 667888898876
No 113
>PRK06361 hypothetical protein; Provisional
Probab=94.26 E-value=0.14 Score=46.08 Aligned_cols=93 Identities=18% Similarity=0.072 Sum_probs=63.4
Q ss_pred HHHhcC-CCeeeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCChHHH
Q 017943 236 SMLDFL-PQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSRE 314 (363)
Q Consensus 236 ~~l~~g-~~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E 314 (363)
.+++.+ .+-++|--.+..+.++.++++++.+|++...+. ......-++...+.|+|+++|||--...+..-.++
T Consensus 107 ~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~lEin~~~~~-----~~~~~~~l~~a~~~gi~vv~~SDaH~~~d~~~~~~ 181 (212)
T PRK06361 107 AAIECEDVDILAHPGLITEEEAELAAENGVFLEITARKGH-----SLTNGHVARIAREAGAPLVINTDTHAPSDLITYEF 181 (212)
T ss_pred HHHhCCCCcEecCcchhhHHHHHHHHHcCeEEEEECCCCc-----ccchHHHHHHHHHhCCcEEEECCCCCHHHHHHHHH
Confidence 355555 577888765667789999999999999863221 10111223455678999999999653333223577
Q ss_pred HHHHHHHCCCCHHHHHHHH
Q 017943 315 YDLAASAFSLGRREMFQLA 333 (363)
Q Consensus 315 ~~~~~~~~~l~~~~l~~l~ 333 (363)
+..++...|++.+++..+.
T Consensus 182 ~~~i~~~~gl~~~~v~~~~ 200 (212)
T PRK06361 182 ARKVALGAGLTEKELEEAL 200 (212)
T ss_pred HHHHHcCCCCCHHHHHHHH
Confidence 7777788999999977664
No 114
>PRK06189 allantoinase; Provisional
Probab=94.25 E-value=0.23 Score=50.11 Aligned_cols=128 Identities=13% Similarity=0.056 Sum_probs=76.7
Q ss_pred hhhHHHHHHHHHHcCCce-eeecCCCCChhhHHH---HHhcCCCee----eEecccCHHHHHHHhcCCCcEEEccccccc
Q 017943 204 WTTFLPALKFAREQGLQI-TLHCGEIPNKEEIQS---MLDFLPQRI----GHACCFEEEEWRKLKSSKIPVEICLTSNIR 275 (363)
Q Consensus 204 ~~~~~~~~~~A~~~gl~~-~~HagE~~~~~~i~~---~l~~g~~ri----gHg~~~~~~~~~~l~~~~i~ve~cPtSN~~ 275 (363)
......+..+|++.|.++ ..|.. ..+.+.. +-..|++-- -|...++++.++.+ +...-++| ++.
T Consensus 218 ~~~v~~~l~la~~~g~~~hi~HiS---t~~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~~---~~~~~~~P--plr 289 (451)
T PRK06189 218 LEAVQRALLYAQETGCPLHFVHIS---SGKAVALIAEAKKRGVDVSVETCPHYLLFTEEDFERI---GAVAKCAP--PLR 289 (451)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECC---CHHHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhCc---CCceEEeC--CCC
Confidence 345667888999999987 45553 3333332 222344321 27777887766543 44555666 233
Q ss_pred cccccCCCCccHHHHHHcCCCEEecCCCCCccC-----CChH--------------HHHHHHHHHCCCCHHHHH-HHHHH
Q 017943 276 TETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-----TSVS--------------REYDLAASAFSLGRREMF-QLAKS 335 (363)
Q Consensus 276 l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~-----~~l~--------------~E~~~~~~~~~l~~~~l~-~l~~n 335 (363)
.. -...++.++++.|+..+|+||...... .++. --+..+....+++.+++. .++.|
T Consensus 290 ~~----~~~~~L~~~l~~G~i~~i~sDh~p~~~~~K~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~n 365 (451)
T PRK06189 290 SR----SQKEELWRGLLAGEIDMISSDHSPCPPELKEGDDFFLVWGGISGGQSTLLVMLTEGYIERGIPLETIARLLATN 365 (451)
T ss_pred Ch----hhHHHHHHHHhCCCceEEECCCCCCCHHHcCcCCcccCCCCceeHHHHHHHHHHHHHhcCCCCHHHHHHHHhhh
Confidence 22 123578899999999999999744321 1111 111222234578999955 66799
Q ss_pred HHHHcCCC
Q 017943 336 AVKFIFAN 343 (363)
Q Consensus 336 a~~~sf~~ 343 (363)
+++...++
T Consensus 366 pA~~lgl~ 373 (451)
T PRK06189 366 PAKRFGLP 373 (451)
T ss_pred HHHHhCCC
Confidence 99998874
No 115
>PRK09061 D-glutamate deacylase; Validated
Probab=93.98 E-value=4.4 Score=41.67 Aligned_cols=101 Identities=19% Similarity=0.219 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecC--CCCCCCChhhHHHHHHHHHHcCCceeeecCCCCC--h----hhHHHHHh---
Q 017943 171 TTEAAMETVKLALEMRDLGVVGIDLS--GNPTKGEWTTFLPALKFAREQGLQITLHCGEIPN--K----EEIQSMLD--- 239 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvGidl~--g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~--~----~~i~~~l~--- 239 (363)
++++..++.++..+--..|++||... +.+ ..+.+.+..+++.|+++|.++++|+-+... + ..+.++++
T Consensus 164 t~~el~~m~~ll~~al~~Ga~gis~~~~y~p-~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~ 242 (509)
T PRK09061 164 TPAELAEILELLEQGLDEGALGIGIGAGYAP-GTGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAA 242 (509)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEecCCccCC-CCCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHHHHHHHHHHHH
Confidence 34554444433332222367787642 323 246788999999999999999999976431 1 22334333
Q ss_pred -cCC-CeeeEecccC----H---HHHHHHhcCCCcE--EEcccc
Q 017943 240 -FLP-QRIGHACCFE----E---EEWRKLKSSKIPV--EICLTS 272 (363)
Q Consensus 240 -~g~-~rigHg~~~~----~---~~~~~l~~~~i~v--e~cPtS 272 (363)
.|. --|.|...+. + +.++..++.|+.+ ++||..
T Consensus 243 ~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 243 ETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred HhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 353 3477876532 2 4577778888666 899876
No 116
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=93.95 E-value=3.6 Score=37.95 Aligned_cols=207 Identities=15% Similarity=0.127 Sum_probs=121.3
Q ss_pred ccCCCCCHHHHHHHHHHhccCCCCCc-----cchHHHHhhcCCCHHHHHHhhhHHH------hhcCCHHHHHHHHHHHHH
Q 017943 15 HLNGSIRDSTLLELARVLGEKGVIVF-----SDVEHVIMKSDRSLHEVFKLFDLIH------VLTTDHATVTRITQEVVE 83 (363)
Q Consensus 15 HL~Gsi~~~~l~~la~~~~~~~~~~~-----~~~~~~~~~~~~~l~~f~~~f~~~~------~~~~~~e~~~~~~~~~~~ 83 (363)
+....++.+..+++++.+.+.|+... ...+.. ....+..+.++...... .+.++ ..+.++
T Consensus 11 ~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~--p~~~~~~~~i~~l~~~~~~~~~~~l~~~-------~~~~i~ 81 (265)
T cd03174 11 SEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV--PQMEDDWEVLRAIRKLVPNVKLQALVRN-------REKGIE 81 (265)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc--ccCCCHHHHHHHHHhccCCcEEEEEccC-------chhhHH
Confidence 34567889999998887666666421 111000 01123333333322111 11111 155677
Q ss_pred HHHhcCCeEEEEeeCCCc-cc--cCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEE
Q 017943 84 DFASENIVYLELRTTPKR-NE--SIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYV 160 (363)
Q Consensus 84 ~~~~~gV~y~E~r~~p~~-~~--~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 160 (363)
.+.+.|+..+-+.++... |. ..+.+.++.++.+.+.++.++ +.|+.+
T Consensus 82 ~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~------------------------------~~G~~v 131 (265)
T cd03174 82 RALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAK------------------------------EAGLEV 131 (265)
T ss_pred HHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH------------------------------HCCCeE
Confidence 777888888777665432 21 124566677888888887764 356777
Q ss_pred EEEE-EeeC-CCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C-CceeeecCCCCCh--hhH
Q 017943 161 RLLL-SIDR-RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G-LQITLHCGEIPNK--EEI 234 (363)
Q Consensus 161 ~li~-~~~r-~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~-g-l~~~~HagE~~~~--~~i 234 (363)
.+.+ .+.| ..+++...+.++.+.+...+.|.=.|..|. ..|+.+..++...++. + +++.+|+..+.+- .+.
T Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~ 208 (265)
T cd03174 132 EGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGL---ATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANS 208 (265)
T ss_pred EEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCC---cCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHH
Confidence 7776 4555 156777888888888775443333344452 4677888888776653 3 8888888766553 455
Q ss_pred HHHHhcCCCeeeEec---------ccCHHHHHHHhcCC
Q 017943 235 QSMLDFLPQRIGHAC---------CFEEEEWRKLKSSK 263 (363)
Q Consensus 235 ~~~l~~g~~rigHg~---------~~~~~~~~~l~~~~ 263 (363)
..|++.|+++|.=.+ ...++++..+...+
T Consensus 209 laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~~~ 246 (265)
T cd03174 209 LAALEAGADRVDGSVNGLGERAGNAATEDLVAALEGLG 246 (265)
T ss_pred HHHHHcCCCEEEeccccccccccCccHHHHHHHHHhcC
Confidence 677888988863211 11345666676665
No 117
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=93.93 E-value=3.2 Score=41.01 Aligned_cols=131 Identities=14% Similarity=0.124 Sum_probs=85.1
Q ss_pred HHHHHHhcCCeEEEEeeCCCc-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC
Q 017943 81 VVEDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK 157 (363)
Q Consensus 81 ~~~~~~~~gV~y~E~r~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 157 (363)
-++.+.+.|+..+.+.++... + ..-+.+.+++++.+.+.++.+++ .|
T Consensus 80 di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~------------------------------~G 129 (378)
T PRK11858 80 DIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKD------------------------------HG 129 (378)
T ss_pred HHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------CC
Confidence 355666778888877665432 1 23477889999998888887643 45
Q ss_pred cEEEEEE-EeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCCh--hh
Q 017943 158 IYVRLLL-SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNK--EE 233 (363)
Q Consensus 158 i~~~li~-~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~-gl~~~~HagE~~~~--~~ 233 (363)
+.+.+.. ...| .+++...+.++.+.+...+.|.=.|..| ...|..+..++...++. ++++.+|+.-+.+- .+
T Consensus 130 ~~v~~~~ed~~r-~~~~~l~~~~~~~~~~Ga~~I~l~DT~G---~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN 205 (378)
T PRK11858 130 LYVSFSAEDASR-TDLDFLIEFAKAAEEAGADRVRFCDTVG---ILDPFTMYELVKELVEAVDIPIEVHCHNDFGMATAN 205 (378)
T ss_pred CeEEEEeccCCC-CCHHHHHHHHHHHHhCCCCEEEEeccCC---CCCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHH
Confidence 5555543 2334 4567777788777766443333335455 34577788877776553 88899998766553 34
Q ss_pred HHHHHhcCCCee
Q 017943 234 IQSMLDFLPQRI 245 (363)
Q Consensus 234 i~~~l~~g~~ri 245 (363)
...+++.|++++
T Consensus 206 ~laAv~aGa~~v 217 (378)
T PRK11858 206 ALAGIEAGAKQV 217 (378)
T ss_pred HHHHHHcCCCEE
Confidence 566778898876
No 118
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=93.79 E-value=0.92 Score=41.64 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=62.4
Q ss_pred HHHh-cCCCeeeEecc------cCHHHHHHHhcCCCcEEEcccccccccccc-CCCCcc----HHHHHHcCCCEEecCCC
Q 017943 236 SMLD-FLPQRIGHACC------FEEEEWRKLKSSKIPVEICLTSNIRTETIS-SLDIHH----FVDLYKAQHPLVLCTDD 303 (363)
Q Consensus 236 ~~l~-~g~~rigHg~~------~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~-~~~~~p----i~~l~~~Gv~v~l~TDd 303 (363)
.+++ .+++-|+|-.. +.+.+++..+++|+.+|+|-++-....... .....| ++...+.|+|++||||-
T Consensus 97 ~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdA 176 (237)
T PRK00912 97 AACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGA 176 (237)
T ss_pred HHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Confidence 3444 34566666432 346788999999999999876522211000 000112 34556789999999996
Q ss_pred CCccCCChHHHHHHHHHHCCCCHHHHHHHH
Q 017943 304 SGVFSTSVSREYDLAASAFSLGRREMFQLA 333 (363)
Q Consensus 304 ~~~~~~~l~~E~~~~~~~~~l~~~~l~~l~ 333 (363)
-......-.++...+++.+|++.++++...
T Consensus 177 h~~~~l~~~~~~~~l~~~~Gl~~~~~~~~~ 206 (237)
T PRK00912 177 MSCYDLRSPREMIALAELFGMEEDEALKAL 206 (237)
T ss_pred CcccccCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555553455666777788999999987654
No 119
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.59 E-value=4.5 Score=36.92 Aligned_cols=97 Identities=9% Similarity=-0.009 Sum_probs=59.8
Q ss_pred CCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCee--eEecccCHHHHHHHhcCCCcEEEcccccc
Q 017943 197 GNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI--GHACCFEEEEWRKLKSSKIPVEICLTSNI 274 (363)
Q Consensus 197 g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~ri--gHg~~~~~~~~~~l~~~~i~ve~cPtSN~ 274 (363)
|.....+|..-..+.+.|+++|+++..=+ ..+.++..++++|++.+ =.+-...+.-++-|+.==-.+.+|||.
T Consensus 91 GA~FiVsP~~~~~v~~~~~~~~i~~iPG~---~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ikal~~p~p~i~~~ptG-- 165 (222)
T PRK07114 91 GANFIVTPLFNPDIAKVCNRRKVPYSPGC---GSLSEIGYAEELGCEIVKLFPGSVYGPGFVKAIKGPMPWTKIMPTG-- 165 (222)
T ss_pred CCCEEECCCCCHHHHHHHHHcCCCEeCCC---CCHHHHHHHHHCCCCEEEECcccccCHHHHHHHhccCCCCeEEeCC--
Confidence 34444455555678889999999987644 35778999999998753 222233455555555432345567764
Q ss_pred ccccccCCCCccHHHHHHcCCC-EEecCC
Q 017943 275 RTETISSLDIHHFVDLYKAQHP-LVLCTD 302 (363)
Q Consensus 275 ~l~~~~~~~~~pi~~l~~~Gv~-v~l~TD 302 (363)
+++. ....+.+|+++|+. |++||.
T Consensus 166 ---GV~~-~~~n~~~yl~aGa~avg~Gs~ 190 (222)
T PRK07114 166 ---GVEP-TEENLKKWFGAGVTCVGMGSK 190 (222)
T ss_pred ---CCCc-chhcHHHHHhCCCEEEEEChh
Confidence 3210 01479999999964 445555
No 120
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=93.50 E-value=0.27 Score=47.09 Aligned_cols=150 Identities=18% Similarity=0.189 Sum_probs=84.2
Q ss_pred ceEEEecCCCCCC-CChhhHHHHHHHHHHcCCceeeecCCCC-ChhhHHHHH-hcC--CCe--eeEecc-cCHHHHHHHh
Q 017943 189 GVVGIDLSGNPTK-GEWTTFLPALKFAREQGLQITLHCGEIP-NKEEIQSML-DFL--PQR--IGHACC-FEEEEWRKLK 260 (363)
Q Consensus 189 ~vvGidl~g~e~~-~~~~~~~~~~~~A~~~gl~~~~HagE~~-~~~~i~~~l-~~g--~~r--igHg~~-~~~~~~~~l~ 260 (363)
++++......+.. .....|+.+...+++.|+++++|.+-.. ....+.+.+ +.| ++| ++|.=. .+.+-+..++
T Consensus 125 G~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~~~~~e~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la 204 (308)
T PF02126_consen 125 GIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRGTRMGLEQLDILEEEGVDPSRVVIGHMDRNPDLDYHRELA 204 (308)
T ss_dssp SEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTTGTCHHHHHHHHHHTT--GGGEEETSGGGST-HHHHHHHH
T ss_pred hheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCCcCHHHHHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHH
Confidence 5677654432221 1123466666667888999999997654 333333433 356 455 688653 3456788999
Q ss_pred cCCCcEEEccc--------cccccccccC-CCCccHHHHHHcCC--CEEecCCCCC---c--c---C---CChHHHHHHH
Q 017943 261 SSKIPVEICLT--------SNIRTETISS-LDIHHFVDLYKAQH--PLVLCTDDSG---V--F---S---TSVSREYDLA 318 (363)
Q Consensus 261 ~~~i~ve~cPt--------SN~~l~~~~~-~~~~pi~~l~~~Gv--~v~l~TDd~~---~--~---~---~~l~~E~~~~ 318 (363)
++|+.++.--. .|-..+..++ ....-+..|.++|. .|.||+|-.. + . + ..+.+.+.=.
T Consensus 205 ~~G~~l~~D~~g~~~~g~~~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~~~~~~gg~g~~~~~i~~~fiP~ 284 (308)
T PF02126_consen 205 DRGVYLEFDTIGREFSGKDKNPRVGYPPDEERIELLKELIEEGYADQILLSHDIGRKSRLYRYGGGGYGYIYILTRFIPR 284 (308)
T ss_dssp HTT-EEEETTTT-B-TTTTTCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHESEEGSSSCCHHHHTTTHHHHTHHHH
T ss_pred hcCCEEEecCCcccccCcccCccCCCCCHHHHHHHHHHHHHcCCcCcEEEeccccccccccccCCCCccHHHHHHHHHHH
Confidence 99999987322 1111111110 01123678888887 5999999432 1 1 1 1244555555
Q ss_pred HHHCCCCHHHHHHHH-HHHHH
Q 017943 319 ASAFSLGRREMFQLA-KSAVK 338 (363)
Q Consensus 319 ~~~~~l~~~~l~~l~-~na~~ 338 (363)
.+..|+|.+++.+|. .|..+
T Consensus 285 L~~~Gv~~~~i~~ilv~NP~r 305 (308)
T PF02126_consen 285 LKERGVSEEDIDKILVENPAR 305 (308)
T ss_dssp HHHTTS-HHHHHHHHTHHHHH
T ss_pred HHHcCCCHHHHHHHHHHCHHH
Confidence 567799999998886 55544
No 121
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=93.40 E-value=4.6 Score=39.65 Aligned_cols=134 Identities=12% Similarity=0.079 Sum_probs=85.8
Q ss_pred HHHHHHHHhcCCeEEEEeeCCCc-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 017943 79 QEVVEDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (363)
Q Consensus 79 ~~~~~~~~~~gV~y~E~r~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (363)
.+-++.+.+.|+..+.+.++-+. + ..-+.+.++.++.+.+.++.+++
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~------------------------------ 123 (363)
T TIGR02090 74 KKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKE------------------------------ 123 (363)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------
Confidence 34456667789888777655332 1 12367888889988888887643
Q ss_pred CCcEEEEEE-EeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCCh--
Q 017943 156 KKIYVRLLL-SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNK-- 231 (363)
Q Consensus 156 ~gi~~~li~-~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~-~gl~~~~HagE~~~~-- 231 (363)
.|+.+.+.+ ...| .+++...+.++.+.+...+.|.=.|..| ...|..+..+++..++ .++++.+|+.-+.+-
T Consensus 124 ~G~~v~~~~eda~r-~~~~~l~~~~~~~~~~g~~~i~l~DT~G---~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~ 199 (363)
T TIGR02090 124 HGLIVEFSAEDATR-TDIDFLIKVFKRAEEAGADRINIADTVG---VLTPQKMEELIKKLKENVKLPISVHCHNDFGLAT 199 (363)
T ss_pred cCCEEEEEEeecCC-CCHHHHHHHHHHHHhCCCCEEEEeCCCC---ccCHHHHHHHHHHHhcccCceEEEEecCCCChHH
Confidence 455555554 3334 4567777777777766443333335455 2457778888877765 368888888766553
Q ss_pred hhHHHHHhcCCCeee
Q 017943 232 EEIQSMLDFLPQRIG 246 (363)
Q Consensus 232 ~~i~~~l~~g~~rig 246 (363)
.+...+++.|++++.
T Consensus 200 AN~laA~~aGa~~vd 214 (363)
T TIGR02090 200 ANSIAGVKAGAEQVH 214 (363)
T ss_pred HHHHHHHHCCCCEEE
Confidence 355667778988753
No 122
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=93.39 E-value=0.96 Score=42.21 Aligned_cols=97 Identities=18% Similarity=0.189 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCC---CCC--CCh-hh---HHHHHHHHHHc-CCceeeecCCCCChhhHHHHHh
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGN---PTK--GEW-TT---FLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLD 239 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~---e~~--~~~-~~---~~~~~~~A~~~-gl~~~~HagE~~~~~~i~~~l~ 239 (363)
.+++.+.+.++...+ .|..-||+.|. +.. .++ ++ +.++.+.+++. ++++.+|. ..++.+..+++
T Consensus 20 ~~~~~~~~~a~~~~~---~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT---~~~~vi~~al~ 93 (257)
T TIGR01496 20 LSVDKAVAHAERMLE---EGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDT---YRAEVARAALE 93 (257)
T ss_pred CCHHHHHHHHHHHHH---CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeC---CCHHHHHHHHH
Confidence 345555555444433 34455666542 111 122 23 67777888876 99999997 56777888998
Q ss_pred cCCCeeeEeccc-CHHHHHHHhcCCCcEEEcccc
Q 017943 240 FLPQRIGHACCF-EEEEWRKLKSSKIPVEICLTS 272 (363)
Q Consensus 240 ~g~~rigHg~~~-~~~~~~~l~~~~i~ve~cPtS 272 (363)
.|++-|-|.... +++.++.+++.|.++.+++..
T Consensus 94 ~G~~iINsis~~~~~~~~~l~~~~~~~vV~m~~~ 127 (257)
T TIGR01496 94 AGADIINDVSGGQDPAMLEVAAEYGVPLVLMHMR 127 (257)
T ss_pred cCCCEEEECCCCCCchhHHHHHHcCCcEEEEeCC
Confidence 999999998766 778999999999999998864
No 123
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=93.25 E-value=1.2 Score=44.70 Aligned_cols=142 Identities=13% Similarity=0.074 Sum_probs=80.2
Q ss_pred CChhhHHHHHHHHHHcCCceeeecCCCCC-----------------------h-----hhHHHHHh----cCCC-eeeEe
Q 017943 202 GEWTTFLPALKFAREQGLQITLHCGEIPN-----------------------K-----EEIQSMLD----FLPQ-RIGHA 248 (363)
Q Consensus 202 ~~~~~~~~~~~~A~~~gl~~~~HagE~~~-----------------------~-----~~i~~~l~----~g~~-rigHg 248 (363)
.+.+.+.++++.|+++|+++.+|+....- | ..+..++. .|+. -+.|.
T Consensus 159 ~~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~ihi~h~ 238 (447)
T cd01315 159 VDDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRLHIVHL 238 (447)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 35577999999999999999999854210 0 01122222 2422 24453
Q ss_pred ccc-CHHHHHHHhcCC--CcEEEcccccccccc-ccC----C-CCcc---------HHHHHHcCCCEEecCCC-CCcc--
Q 017943 249 CCF-EEEEWRKLKSSK--IPVEICLTSNIRTET-ISS----L-DIHH---------FVDLYKAQHPLVLCTDD-SGVF-- 307 (363)
Q Consensus 249 ~~~-~~~~~~~l~~~~--i~ve~cPtSN~~l~~-~~~----~-~~~p---------i~~l~~~Gv~v~l~TDd-~~~~-- 307 (363)
... .-+.++..+.+| +.+++||-....... +.. + -.+| +.+.++.|...+|+||- |...
T Consensus 239 s~~~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~~~~~~~~~Pplr~~~~~~~l~~~l~~g~i~~i~SDh~p~~~~~ 318 (447)
T cd01315 239 SSAEAVPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPIRDAANQEQLWEALENGDIDMVVSDHSPCTPEL 318 (447)
T ss_pred CCHHHHHHHHHHHHCCCceEEEeccccEEEcHHHccCCCCceEECCCCCChHHHHHHHHHHhCCceeEEeCCCCCCCHHH
Confidence 321 123455555555 666788853322110 000 0 0123 33467789999999994 3221
Q ss_pred ----------------C--CChHHHHHHHHHHCCCCHHHHH-HHHHHHHHHcCCC
Q 017943 308 ----------------S--TSVSREYDLAASAFSLGRREMF-QLAKSAVKFIFAN 343 (363)
Q Consensus 308 ----------------~--~~l~~E~~~~~~~~~l~~~~l~-~l~~na~~~sf~~ 343 (363)
+ +.|..-+..+....+++++++. .++.|+++...++
T Consensus 319 k~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~ 373 (447)
T cd01315 319 KLLGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLEDIARLMCENPAKLFGLS 373 (447)
T ss_pred hccCCCChhhCCCCeeEHHHhHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCC
Confidence 1 1233333444556789999966 4568999998875
No 124
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=93.23 E-value=4.2 Score=38.60 Aligned_cols=186 Identities=8% Similarity=-0.005 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHH-HHHHHc--CCceeeecCCCCChhhHHHHHhcCCCeee-
Q 017943 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPAL-KFAREQ--GLQITLHCGEIPNKEEIQSMLDFLPQRIG- 246 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~-~~A~~~--gl~~~~HagE~~~~~~i~~~l~~g~~rig- 246 (363)
+.+.+...++-|.+.+.+.|+.+.-....+....+.+..+. ..|++. .+|+.+|..-..+.+.+..+++.|-+.+=
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMi 106 (288)
T TIGR00167 27 NLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAGFSSVMI 106 (288)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcCCCEEEe
Confidence 46788888988888887766665433323212345555544 457777 89999999888777888899998866531
Q ss_pred EecccC--------HHHHHHHhcCCCcEEEcccccccccccc---------CCCCcc--HHHHHHc-CC---CEEecCCC
Q 017943 247 HACCFE--------EEEWRKLKSSKIPVEICLTSNIRTETIS---------SLDIHH--FVDLYKA-QH---PLVLCTDD 303 (363)
Q Consensus 247 Hg~~~~--------~~~~~~l~~~~i~ve~cPtSN~~l~~~~---------~~~~~p--i~~l~~~-Gv---~v~l~TDd 303 (363)
=|..++ .+.+++....|+.||...-. +++.. ..-+.| ..+|.+. |+ -|++||==
T Consensus 107 DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~---vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~H 183 (288)
T TIGR00167 107 DGSHEPFEENIELTKKVVERAHKMGVSVEAELGT---LGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVH 183 (288)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee---ccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccc
Confidence 122222 35677778889999865431 11100 111233 4566653 65 35666532
Q ss_pred CC-----c-cCCChHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 017943 304 SG-----V-FSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 359 (363)
Q Consensus 304 ~~-----~-~~~~l~~E~~~~~~~-------~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~ 359 (363)
.. - .+.++..|++..... -|++.+++.++..+++.-.=+.-+.+....+.+.+..+
T Consensus 184 G~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 252 (288)
T TIGR00167 184 GVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQIAFAAAVRNYYA 252 (288)
T ss_pred cccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHHHHHHHHHHHHHH
Confidence 11 1 345566666665431 36788889988888888887777777777777766654
No 125
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=93.21 E-value=6 Score=36.98 Aligned_cols=149 Identities=14% Similarity=0.111 Sum_probs=86.7
Q ss_pred HHHHHhcC----CeEEEEeeCCCc-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCC
Q 017943 82 VEDFASEN----IVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTR 154 (363)
Q Consensus 82 ~~~~~~~g----V~y~E~r~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (363)
++.+.+.| +..+.+.++-.. + ..-+.+.++.++.+.+.++.+++
T Consensus 75 v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~----------------------------- 125 (268)
T cd07940 75 IDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKS----------------------------- 125 (268)
T ss_pred HHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-----------------------------
Confidence 34444445 766666543221 1 12367777888888888877643
Q ss_pred CCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C---CceeeecCCCCC
Q 017943 155 GKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G---LQITLHCGEIPN 230 (363)
Q Consensus 155 ~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~-g---l~~~~HagE~~~ 230 (363)
.|+.+.+-..-.-..+++...+.++.+.+...+.|.=-|..| ...|..+..++...++. + +++.+|+.-+.+
T Consensus 126 -~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~G 201 (268)
T cd07940 126 -HGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVG---YLTPEEFGELIKKLKENVPNIKVPISVHCHNDLG 201 (268)
T ss_pred -cCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC---CCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcc
Confidence 345554432222224566667777777766333222224444 34678888888887764 4 788888876665
Q ss_pred h--hhHHHHHhcCCCeeeEe---------cccCHHHHHHHhcCC
Q 017943 231 K--EEIQSMLDFLPQRIGHA---------CCFEEEEWRKLKSSK 263 (363)
Q Consensus 231 ~--~~i~~~l~~g~~rigHg---------~~~~~~~~~~l~~~~ 263 (363)
- .+...+++.|+++|.=. ....++++..+...+
T Consensus 202 lA~An~laAi~aG~~~iD~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 202 LAVANSLAAVEAGARQVECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred hHHHHHHHHHHhCCCEEEEEeeccccccccccHHHHHHHHHhcc
Confidence 3 35567788898886321 122356666676554
No 126
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=93.21 E-value=7.3 Score=36.67 Aligned_cols=131 Identities=14% Similarity=0.069 Sum_probs=81.6
Q ss_pred HHHHHhcCCeEEEEeeCCCc-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc
Q 017943 82 VEDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI 158 (363)
Q Consensus 82 ~~~~~~~gV~y~E~r~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 158 (363)
++.+.+.|+..+-+.++.+. + ..-+.+.++.++.+.+.++.+++ .|+
T Consensus 79 v~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~------------------------------~G~ 128 (274)
T cd07938 79 AERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKA------------------------------AGL 128 (274)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHH------------------------------CCC
Confidence 56667788888777665442 1 23467778888888888877643 344
Q ss_pred EEEE--EEEee-----CCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc--CCceeeecCCCC
Q 017943 159 YVRL--LLSID-----RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ--GLQITLHCGEIP 229 (363)
Q Consensus 159 ~~~l--i~~~~-----r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~--gl~~~~HagE~~ 229 (363)
.+.. ..++. | .+++...+.++.+.+...+.|.=-|..|. ..|..+..++...++. ++++.+|+.-+.
T Consensus 129 ~v~~~i~~~f~~~~~~~-~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~ 204 (274)
T cd07938 129 RVRGYVSTAFGCPYEGE-VPPERVAEVAERLLDLGCDEISLGDTIGV---ATPAQVRRLLEAVLERFPDEKLALHFHDTR 204 (274)
T ss_pred eEEEEEEeEecCCCCCC-CCHHHHHHHHHHHHHcCCCEEEECCCCCc---cCHHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence 4443 33332 2 25666667777776653322222244442 4677888888877664 488888887665
Q ss_pred Ch--hhHHHHHhcCCCeee
Q 017943 230 NK--EEIQSMLDFLPQRIG 246 (363)
Q Consensus 230 ~~--~~i~~~l~~g~~rig 246 (363)
+- .+...+++.|++++.
T Consensus 205 GlA~AN~laA~~aGa~~id 223 (274)
T cd07938 205 GQALANILAALEAGVRRFD 223 (274)
T ss_pred ChHHHHHHHHHHhCCCEEE
Confidence 53 455677888988764
No 127
>PRK08609 hypothetical protein; Provisional
Probab=93.00 E-value=8.3 Score=40.30 Aligned_cols=74 Identities=15% Similarity=0.092 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCChHHHHHHHHHHCCCCHHHHHH
Q 017943 253 EEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQ 331 (363)
Q Consensus 253 ~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~~~l~~~~l~~ 331 (363)
++.++.++++|+.+|++-.+- ... ....-++.+.+.|++++||||.=......-.++-..+++..|++++++..
T Consensus 482 ~~i~~~a~~~G~~lEINa~~~-r~~----~~~~~~~~~~e~Gv~i~igSDAH~~~~l~~~~~~v~~ar~~~~~~~~v~N 555 (570)
T PRK08609 482 DQLIELAKETNTALELNANPN-RLD----LSAEHLKKAQEAGVKLAINTDAHHTEMLDDMKYGVATARKGWIQKDRVIN 555 (570)
T ss_pred HHHHHHHHHhCCEEEEcCCcc-ccC----ccHHHHHHHHHcCCEEEEECCCCChhhhCcHHHHHHHHHHcCCCHHHccc
Confidence 456788899999999986542 111 12345788899999999999964334423344445555678998888643
No 128
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=92.86 E-value=6.4 Score=37.21 Aligned_cols=132 Identities=12% Similarity=0.060 Sum_probs=83.2
Q ss_pred HHHHHHhcCCeEEEEeeCCCc-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC
Q 017943 81 VVEDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK 157 (363)
Q Consensus 81 ~~~~~~~~gV~y~E~r~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 157 (363)
-++.+.+-|+..+-+.++-+. + ...+.+.++.++.+.+.++.+++ .|
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~------------------------------~G 128 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIK------------------------------NG 128 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHh------------------------------CC
Confidence 356667778887777664322 2 12357888888888888876542 45
Q ss_pred cEEEEEEEe-e---CCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc--CCceeeecCCCCCh
Q 017943 158 IYVRLLLSI-D---RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ--GLQITLHCGEIPNK 231 (363)
Q Consensus 158 i~~~li~~~-~---r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~--gl~~~~HagE~~~~ 231 (363)
+.+.+.+.- . | .+++...+.++.+.+...+.|.=-|..| ...|.....++...++. ++++.+|+.-+.+-
T Consensus 129 ~~v~~~~~d~~~~~r-~~~~~~~~~~~~~~~~G~~~i~l~DT~G---~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gl 204 (280)
T cd07945 129 IEVNIYLEDWSNGMR-DSPDYVFQLVDFLSDLPIKRIMLPDTLG---ILSPFETYTYISDMVKRYPNLHFDFHAHNDYDL 204 (280)
T ss_pred CEEEEEEEeCCCCCc-CCHHHHHHHHHHHHHcCCCEEEecCCCC---CCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCH
Confidence 555554442 1 3 3577777777777766333222224444 34677788888776653 58888888766654
Q ss_pred --hhHHHHHhcCCCeee
Q 017943 232 --EEIQSMLDFLPQRIG 246 (363)
Q Consensus 232 --~~i~~~l~~g~~rig 246 (363)
.+...+++.|++++.
T Consensus 205 a~AN~laA~~aGa~~vd 221 (280)
T cd07945 205 AVANVLAAVKAGIKGLH 221 (280)
T ss_pred HHHHHHHHHHhCCCEEE
Confidence 456677888988764
No 129
>PRK07575 dihydroorotase; Provisional
Probab=92.74 E-value=0.47 Score=47.74 Aligned_cols=127 Identities=9% Similarity=0.030 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHcCCceee-ecCCCCChhhHHHHHhc-C----CCeeeEecccCHHHHHHHhcCCCcEEEcccccccccc
Q 017943 205 TTFLPALKFAREQGLQITL-HCGEIPNKEEIQSMLDF-L----PQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTET 278 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~-HagE~~~~~~i~~~l~~-g----~~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~ 278 (363)
..+..+.++|++.|.++++ |++ .++.+..+... + ++-.-|=++++++++. +.+...-+||. +...
T Consensus 212 ~av~~~~~la~~~g~~lhi~HiS---t~~~v~~i~~~k~~~vt~ev~phhL~l~~~~~~---~~~~~~k~~PP--LR~~- 282 (438)
T PRK07575 212 LATRLALKLSKKYQRRLHILHLS---TAIEAELLRQDKPSWVTAEVTPQHLLLNTDAYE---RIGTLAQMNPP--LRSP- 282 (438)
T ss_pred HHHHHHHHHHHHHCCCEEEEECC---CHHHHHHHHHhcCCCEEEEEchhhheeCHHHHh---CCCceEEEeCC--CCCH-
Confidence 4567888999999999999 996 23333322222 1 2222233677777654 35777788996 3332
Q ss_pred ccCCCCccHHHHHHcCCCEEecCCCCCccC-----------CCh-HHHHHHHH-----HHCCCCHHHHHHH-HHHHHHHc
Q 017943 279 ISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-----------TSV-SREYDLAA-----SAFSLGRREMFQL-AKSAVKFI 340 (363)
Q Consensus 279 ~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~-----------~~l-~~E~~~~~-----~~~~l~~~~l~~l-~~na~~~s 340 (363)
+ ..-++.++++.|+..+|+||...... .++ ..|+.+.. ...+++.+++.++ +.|+++..
T Consensus 283 -~--d~~~L~~~l~~G~id~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~l~~l~~~~~~~~lsl~~~~~~~s~npAk~l 359 (438)
T PRK07575 283 -E--DNEALWQALRDGVIDFIATDHAPHTLEEKAQPYPNSPSGMPGVETSLPLMLTAAMRGKCTVAQVVRWMSTAVARAY 359 (438)
T ss_pred -H--HHHHHHHHHhCCCCCEEecCCCCCCHHHccCCcccCCCCcccHHHHHHHHHHHHhcCCCCHHHHHHHHhhhHHHHc
Confidence 1 24678899999999999999654431 222 33333322 1236899996554 69999887
Q ss_pred CCC
Q 017943 341 FAN 343 (363)
Q Consensus 341 f~~ 343 (363)
-++
T Consensus 360 gl~ 362 (438)
T PRK07575 360 GIP 362 (438)
T ss_pred CCC
Confidence 663
No 130
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=92.61 E-value=4.1 Score=39.38 Aligned_cols=136 Identities=11% Similarity=0.056 Sum_probs=80.1
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCC-eeeEeccc-CHHHHHHHhcCC--CcEEEccccccccc-
Q 017943 203 EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQ-RIGHACCF-EEEEWRKLKSSK--IPVEICLTSNIRTE- 277 (363)
Q Consensus 203 ~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~-rigHg~~~-~~~~~~~l~~~~--i~ve~cPtSN~~l~- 277 (363)
+...+.++++.+++.|+++.+|+. ..+.-+...|+. -|.|.... .-+.++..+++| |..|+||..=....
T Consensus 113 ~~~~l~~~~~~~~~~g~~v~~H~E-----r~~~la~~~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ev~ph~L~l~~~ 187 (337)
T cd01302 113 DDGTLMRTFLEIASRGGPVMVHAE-----RAAQLAEEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDES 187 (337)
T ss_pred CHHHHHHHHHHHHhcCCeEEEeHH-----HHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCcEEEEcChhhheeCHH
Confidence 456788899999999999999995 222222234654 36676532 225666667776 55689998422110
Q ss_pred cc---cCC--CCcc---------HHHHHHcCCCEEecCCCCCcc---------------C-CC----hHHHHHHHHHHCC
Q 017943 278 TI---SSL--DIHH---------FVDLYKAQHPLVLCTDDSGVF---------------S-TS----VSREYDLAASAFS 323 (363)
Q Consensus 278 ~~---~~~--~~~p---------i~~l~~~Gv~v~l~TDd~~~~---------------~-~~----l~~E~~~~~~~~~ 323 (363)
.+ ..+ -.+| +.+.++.|+.-+|+||-.... | .. +...+..+. ..+
T Consensus 188 ~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~id~i~sDh~p~~~~~k~~~~~~~~a~~G~~g~e~~l~~~~~~~~-~~~ 266 (337)
T cd01302 188 MLRLNGAWGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESGKDIWKAPPGFPGLETRLPILLTEGV-KRG 266 (337)
T ss_pred HhhCCCceEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHhccCCCcccCCCCcccHHHHHHHHHHHHH-hcC
Confidence 00 000 0133 345567899999999964331 1 11 222222222 358
Q ss_pred CCHHHHHH-HHHHHHHHcCCCh
Q 017943 324 LGRREMFQ-LAKSAVKFIFANG 344 (363)
Q Consensus 324 l~~~~l~~-l~~na~~~sf~~~ 344 (363)
++++++.+ ++.|+++..-+++
T Consensus 267 i~~~~~~~~~s~~pA~~~gl~~ 288 (337)
T cd01302 267 LSLETLVEILSENPARIFGLYP 288 (337)
T ss_pred CCHHHHHHHHHHHHHHHcCCCC
Confidence 99999664 5688888876643
No 131
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=92.51 E-value=5.6 Score=37.72 Aligned_cols=189 Identities=9% Similarity=-0.007 Sum_probs=108.2
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHH-HHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeee-E
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG-H 247 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~-~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rig-H 247 (363)
.+.+.+...++-|.+.+.+.|+.+.-..-.. .+.+.+.. +...|++.++|+.+|..-..+.+.+..+++.|-+.+= =
T Consensus 26 ~n~e~~~avi~AAee~~sPvIlq~s~~~~~~-~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~D 104 (286)
T PRK12738 26 HNAETIQAILEVCSEMRSPVILAGTPGTFKH-IALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMID 104 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCcchhhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEeec
Confidence 3468888899999888877676654322222 23344443 4455788899999999887777888888888765531 1
Q ss_pred eccc--------CHHHHHHHhcCCCcEEEcccc----ccc--cccccCCCCcc--HHHHHH-cCCC---EEecCCCCCc-
Q 017943 248 ACCF--------EEEEWRKLKSSKIPVEICLTS----NIR--TETISSLDIHH--FVDLYK-AQHP---LVLCTDDSGV- 306 (363)
Q Consensus 248 g~~~--------~~~~~~~l~~~~i~ve~cPtS----N~~--l~~~~~~~~~p--i~~l~~-~Gv~---v~l~TDd~~~- 306 (363)
|..+ +.+.+++....|+.||.-.-. +-- ...-..+-+.| ..++.+ -|+- |++||==..+
T Consensus 105 gS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~ 184 (286)
T PRK12738 105 GSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYS 184 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCC
Confidence 2222 235677777788888743321 000 00000011234 445554 3653 4555532111
Q ss_pred ----cCCChHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 017943 307 ----FSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 359 (363)
Q Consensus 307 ----~~~~l~~E~~~~~~~-------~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~ 359 (363)
.+.++.+|++..... -|++.++++++..+++.-.=+.-+.+....+.+.++.+
T Consensus 185 ~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~ 248 (286)
T PRK12738 185 KTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFA 248 (286)
T ss_pred CCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 223455555544321 25677777777777777766666666666666665543
No 132
>PRK07328 histidinol-phosphatase; Provisional
Probab=92.25 E-value=0.45 Score=44.58 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=43.2
Q ss_pred HHHHHHHhcCCCcEEEccccccccccccC-CCC-ccHHHHHHcCCCEEecCCC--CCccCCChHHHHHHHHHHCCCC
Q 017943 253 EEEWRKLKSSKIPVEICLTSNIRTETISS-LDI-HHFVDLYKAQHPLVLCTDD--SGVFSTSVSREYDLAASAFSLG 325 (363)
Q Consensus 253 ~~~~~~l~~~~i~ve~cPtSN~~l~~~~~-~~~-~pi~~l~~~Gv~v~l~TDd--~~~~~~~l~~E~~~~~~~~~l~ 325 (363)
++.++.++++|+.+|++-.+-.+ + ... +.. .-++.+.+.|+|++||||. |.-.+.+. ++...+++..|++
T Consensus 180 ~~il~~~~~~g~~lEiNt~~~r~-~-~~~~yp~~~il~~~~~~g~~itigSDAH~~~~vg~~~-~~a~~~l~~~G~~ 253 (269)
T PRK07328 180 EEALDVIAAAGLALEVNTAGLRK-P-VGEIYPSPALLRACRERGIPVVLGSDAHRPEEVGFGF-AEALALLKEVGYT 253 (269)
T ss_pred HHHHHHHHHcCCEEEEEchhhcC-C-CCCCCCCHHHHHHHHHcCCCEEEeCCCCCHHHHhccH-HHHHHHHHHcCCc
Confidence 46789999999999998753222 1 111 111 1246778899999999995 32222233 4445555556764
No 133
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=92.13 E-value=2.1 Score=38.26 Aligned_cols=90 Identities=13% Similarity=0.016 Sum_probs=56.3
Q ss_pred CChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCee--eEecccC-HHHHHHHhcCCCcEEEcccccccccc
Q 017943 202 GEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI--GHACCFE-EEEWRKLKSSKIPVEICLTSNIRTET 278 (363)
Q Consensus 202 ~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~ri--gHg~~~~-~~~~~~l~~~~i~ve~cPtSN~~l~~ 278 (363)
.+|..-.++.+.|+++|+++..=+ ..+.++..++++|++-+ =.+-.+- +.-++.++.-=-.+-+|||. +
T Consensus 85 vSP~~~~~v~~~~~~~~i~~iPG~---~TptEi~~A~~~G~~~vK~FPA~~~GG~~~ik~l~~p~p~~~~~ptG-----G 156 (196)
T PF01081_consen 85 VSPGFDPEVIEYAREYGIPYIPGV---MTPTEIMQALEAGADIVKLFPAGALGGPSYIKALRGPFPDLPFMPTG-----G 156 (196)
T ss_dssp EESS--HHHHHHHHHHTSEEEEEE---SSHHHHHHHHHTT-SEEEETTTTTTTHHHHHHHHHTTTTT-EEEEBS-----S
T ss_pred ECCCCCHHHHHHHHHcCCcccCCc---CCHHHHHHHHHCCCCEEEEecchhcCcHHHHHHHhccCCCCeEEEcC-----C
Confidence 344455677889999999988765 35778899999997653 2233334 56666666532335667763 3
Q ss_pred ccCCCCccHHHHHHcCCC-EEecCC
Q 017943 279 ISSLDIHHFVDLYKAQHP-LVLCTD 302 (363)
Q Consensus 279 ~~~~~~~pi~~l~~~Gv~-v~l~TD 302 (363)
+ ....+.+|+++|.- +++||.
T Consensus 157 V---~~~N~~~~l~ag~~~vg~Gs~ 178 (196)
T PF01081_consen 157 V---NPDNLAEYLKAGAVAVGGGSW 178 (196)
T ss_dssp -----TTTHHHHHTSTTBSEEEESG
T ss_pred C---CHHHHHHHHhCCCEEEEECch
Confidence 2 34579999999953 555553
No 134
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=92.00 E-value=7.1 Score=38.34 Aligned_cols=132 Identities=9% Similarity=0.034 Sum_probs=80.4
Q ss_pred HHHHHHhcCCeEEEEeeCCCc-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC
Q 017943 81 VVEDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK 157 (363)
Q Consensus 81 ~~~~~~~~gV~y~E~r~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 157 (363)
-++.+...|+..+-+.++... + ..-+.+.++.++.+.+.++.+++ .|
T Consensus 77 di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~------------------------------~g 126 (365)
T TIGR02660 77 DIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARD------------------------------RG 126 (365)
T ss_pred HHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHh------------------------------CC
Confidence 345566678866666554322 1 22367788888888888876543 34
Q ss_pred cEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCCh--hhH
Q 017943 158 IYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNK--EEI 234 (363)
Q Consensus 158 i~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~-~gl~~~~HagE~~~~--~~i 234 (363)
+.+.+-+.-.-..+++...+.++.+.+...+.|.=-|..| ...|..+..++...++ .++++.+|+.-..+- .+.
T Consensus 127 ~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ANa 203 (365)
T TIGR02660 127 LFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADTVG---ILDPFSTYELVRALRQAVDLPLEMHAHNDLGMATANT 203 (365)
T ss_pred CEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCC---CCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHH
Confidence 4444433222223567777777777766433222224444 3467788888877655 478888888765543 345
Q ss_pred HHHHhcCCCee
Q 017943 235 QSMLDFLPQRI 245 (363)
Q Consensus 235 ~~~l~~g~~ri 245 (363)
..|+..|++++
T Consensus 204 laA~~aGa~~v 214 (365)
T TIGR02660 204 LAAVRAGATHV 214 (365)
T ss_pred HHHHHhCCCEE
Confidence 66778898886
No 135
>PLN02303 urease
Probab=91.91 E-value=1.6 Score=46.91 Aligned_cols=154 Identities=14% Similarity=0.074 Sum_probs=92.9
Q ss_pred ceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChh-hHHHHHh-cCCCeeeEecc---c----CHHHHHHH
Q 017943 189 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKE-EIQSMLD-FLPQRIGHACC---F----EEEEWRKL 259 (363)
Q Consensus 189 ~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~-~i~~~l~-~g~~rigHg~~---~----~~~~~~~l 259 (363)
+++||-..++ +..++..+..+++.|+++|+++++| .|..++. .+.+.++ +| .|--|-++ + .|+.++..
T Consensus 482 Ga~GfK~h~d-~gvTpelL~raLe~AkelGVpVaIH-AEdLnE~G~vE~t~~a~G-~RpIh~~h~~Ga~gghapdi~~~~ 558 (837)
T PLN02303 482 GAMGLKLHED-WGTTPAAIDNCLDVAEEYDIQVTIH-TDTLNESGCVEHSIAAFK-GRTIHTYHSEGAGGGHAPDIIKVC 558 (837)
T ss_pred CcEEEEECCC-CCCCHHHHHHHHHHHHHcCCEEEEe-cCcccccchHHHHHHHHC-CChHHHHHhcCCCCCCCcHHHHhc
Confidence 7888886643 3456788999999999999999999 5654331 1333333 22 22222111 1 36777777
Q ss_pred hcCCCc-EEEccccccccccccC--------------------CCCccH--------HHHHHcCCCEEecCCCCCccC--
Q 017943 260 KSSKIP-VEICLTSNIRTETISS--------------------LDIHHF--------VDLYKAQHPLVLCTDDSGVFS-- 308 (363)
Q Consensus 260 ~~~~i~-ve~cPtSN~~l~~~~~--------------------~~~~pi--------~~l~~~Gv~v~l~TDd~~~~~-- 308 (363)
.+.+|. -..+||--...+.+.. +....| .-|.+.|+-..++||+.++..
T Consensus 559 ~~~nvlpsstnpt~p~t~nt~~e~~dm~m~~h~l~~~~~edvafa~srir~~tiaaed~l~d~G~~s~~~SDs~amgr~g 638 (837)
T PLN02303 559 GVKNVLPSSTNPTRPYTKNTIDEHLDMLMVCHHLDKNIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIG 638 (837)
T ss_pred CCCCccCCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhhhhccchhhccchhhhccCCEEEEeccchhhCccc
Confidence 777753 2444543332221110 011111 235789999999999998774
Q ss_pred ---CChHHHHHHHHHH-CCC----------CHHH-HHHHHHHHHHHcCCChH
Q 017943 309 ---TSVSREYDLAASA-FSL----------GRRE-MFQLAKSAVKFIFANGR 345 (363)
Q Consensus 309 ---~~l~~E~~~~~~~-~~l----------~~~~-l~~l~~na~~~sf~~~~ 345 (363)
.-+++|...+... .++ +.++ |...+.|++.+.++++.
T Consensus 639 e~i~r~~q~A~k~~~~~g~l~~~~~~~dn~rv~~aL~~~TiN~A~AlG~~~~ 690 (837)
T PLN02303 639 EVITRTWQTAHKMKSQRGALEPRGADNDNFRIKRYIAKYTINPAIAHGMSHF 690 (837)
T ss_pred ceeeehHHHHHHHHHhcCCCCCccccccccCHHHHHHHHhHHHHHHCCcccC
Confidence 4566666555432 223 3344 78889999999988753
No 136
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=91.90 E-value=6.3 Score=41.30 Aligned_cols=185 Identities=11% Similarity=0.079 Sum_probs=101.5
Q ss_pred cCCCCCHHHHHHHHHHhccCCCCCcc-----chHHHHhhcCCCHHHHHHhhhHH------Hh------h--cCCHHHHHH
Q 017943 16 LNGSIRDSTLLELARVLGEKGVIVFS-----DVEHVIMKSDRSLHEVFKLFDLI------HV------L--TTDHATVTR 76 (363)
Q Consensus 16 L~Gsi~~~~l~~la~~~~~~~~~~~~-----~~~~~~~~~~~~l~~f~~~f~~~------~~------~--~~~~e~~~~ 76 (363)
+.--++.+.++.++..+.+.|+..+. .+...+....++-++.++.+... .. + +.+.+| .
T Consensus 19 ~atr~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d--~ 96 (596)
T PRK14042 19 IATRMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYAD--D 96 (596)
T ss_pred hhcCCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCCh--H
Confidence 44456777888888776555543210 11111111223444555555421 11 1 112222 5
Q ss_pred HHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCC
Q 017943 77 ITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGK 156 (363)
Q Consensus 77 ~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (363)
+++..++.+++.|+..+.+.-+.+ .++.+..+++.+++ .
T Consensus 97 vv~~~v~~a~~~Gidv~Rifd~ln-----------d~~n~~~~i~~~k~------------------------------~ 135 (596)
T PRK14042 97 VVRAFVKLAVNNGVDVFRVFDALN-----------DARNLKVAIDAIKS------------------------------H 135 (596)
T ss_pred HHHHHHHHHHHcCCCEEEEcccCc-----------chHHHHHHHHHHHH------------------------------c
Confidence 677789999999999987754422 13333444444332 3
Q ss_pred CcEEE--EEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCCh--
Q 017943 157 KIYVR--LLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNK-- 231 (363)
Q Consensus 157 gi~~~--li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~-~gl~~~~HagE~~~~-- 231 (363)
|..+. ++++.+--..++.-.+.++.+.+...+.|.=-|.+| ...|.....++...++ .++++.+|+.-+.+-
T Consensus 136 G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG---~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~ 212 (596)
T PRK14042 136 KKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAG---LLTPTVTVELYAGLKQATGLPVHLHSHSTSGLAS 212 (596)
T ss_pred CCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCccc---CCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHH
Confidence 44443 444444334556555666665555332222224555 2456777777776654 589999999877664
Q ss_pred hhHHHHHhcCCCeee
Q 017943 232 EEIQSMLDFLPQRIG 246 (363)
Q Consensus 232 ~~i~~~l~~g~~rig 246 (363)
.+...|++.|+++|.
T Consensus 213 an~laAieaGad~iD 227 (596)
T PRK14042 213 ICHYEAVLAGCNHID 227 (596)
T ss_pred HHHHHHHHhCCCEEE
Confidence 345677888998864
No 137
>PRK06801 hypothetical protein; Provisional
Probab=91.80 E-value=12 Score=35.51 Aligned_cols=186 Identities=8% Similarity=-0.024 Sum_probs=107.8
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHH-HHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeE-
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH- 247 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~-~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigH- 247 (363)
.+.+.+...++-|.+.+.+.|+.+.-....+ .+.+.+.. +...|++..+|+.+|..-....+.+..+++.|.+.+--
T Consensus 26 ~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~-~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D 104 (286)
T PRK06801 26 LDSHFLRALFAAAKQERSPFIINIAEVHFKY-ISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSSVMFD 104 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEeCcchhhc-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcEEEEc
Confidence 3568888889988888877677665432222 33444544 44557888999999998877777888888888765421
Q ss_pred ecccC--------HHHHHHHhcCCCcEEEcccccccccccc----------CCCCcc--HHHHH-HcCCC---EEecCCC
Q 017943 248 ACCFE--------EEEWRKLKSSKIPVEICLTSNIRTETIS----------SLDIHH--FVDLY-KAQHP---LVLCTDD 303 (363)
Q Consensus 248 g~~~~--------~~~~~~l~~~~i~ve~cPtSN~~l~~~~----------~~~~~p--i~~l~-~~Gv~---v~l~TDd 303 (363)
|-.++ .+..++....|+.||.-.-. +|+.. +....| ..++. +-|+- +++||=-
T Consensus 105 ~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~---vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~H 181 (286)
T PRK06801 105 GSTLEYEENVRQTREVVKMCHAVGVSVEAELGA---VGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNAH 181 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCc---ccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCCC
Confidence 11122 24566677888888654432 11100 001122 34555 55653 2333321
Q ss_pred C---C--ccCCChHHHHHHHHH-----H--CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 017943 304 S---G--VFSTSVSREYDLAAS-----A--FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 359 (363)
Q Consensus 304 ~---~--~~~~~l~~E~~~~~~-----~--~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~ 359 (363)
. + -.+.++..+++.... + -|++.+++.++...++.-.-+..+.+....+.+.++.+
T Consensus 182 g~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T~~~~a~~~~~~~~~~ 249 (286)
T PRK06801 182 GKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRAIELGIHKINFYTGMSQAALAAVEQRMT 249 (286)
T ss_pred CCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEehhHHHHHHHHHHHHHHH
Confidence 1 1 112344444443322 1 14777888888877777776666666666666665543
No 138
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=91.78 E-value=7.4 Score=35.39 Aligned_cols=190 Identities=14% Similarity=0.104 Sum_probs=102.9
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCccchHHHHhhcCCCHHHHHHhhh-HHH-----hh-cCCHHHHHHHHHHHHHHHHhcC
Q 017943 17 NGSIRDSTLLELARVLGEKGVIVFSDVEHVIMKSDRSLHEVFKLFD-LIH-----VL-TTDHATVTRITQEVVEDFASEN 89 (363)
Q Consensus 17 ~Gsi~~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~f~-~~~-----~~-~~~~e~~~~~~~~~~~~~~~~g 89 (363)
...++.+...++++.+.+.|+....-- +.....+..+.++... ... .+ ....++++..+ +.+...|
T Consensus 8 ~~~~~~~~k~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~g 80 (237)
T PF00682_consen 8 GVAFSTEEKLEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPNARLQALCRANEEDIERAV----EAAKEAG 80 (237)
T ss_dssp STT--HHHHHHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHH----HHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcccccceeeeehHHHHHHHH----HhhHhcc
Confidence 456888999998887666666431100 0000011111122211 111 11 22344444433 3445578
Q ss_pred CeEEEEeeCCCc---cccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEEEe
Q 017943 90 IVYLELRTTPKR---NESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSI 166 (363)
Q Consensus 90 V~y~E~r~~p~~---~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~~ 166 (363)
+..+.+.++... ....+.+.++.++.+.+.++.+++ .|+.+.+-...
T Consensus 81 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~------------------------------~g~~v~~~~~~ 130 (237)
T PF00682_consen 81 IDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKE------------------------------LGYEVAFGCED 130 (237)
T ss_dssp SSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHH------------------------------TTSEEEEEETT
T ss_pred CCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHh------------------------------cCCceEeCccc
Confidence 877766655332 123467778888888777776643 45555444322
Q ss_pred eCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cC-CceeeecCCCCCh--hhHHHHHhcCC
Q 017943 167 DRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QG-LQITLHCGEIPNK--EEIQSMLDFLP 242 (363)
Q Consensus 167 ~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~-~g-l~~~~HagE~~~~--~~i~~~l~~g~ 242 (363)
.-..+++...+.++.+.+...+.|.=-|..|. ..|.....++...++ .+ +++.+|+.-..+- .+...+++.|+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa 207 (237)
T PF00682_consen 131 ASRTDPEELLELAEALAEAGADIIYLADTVGI---MTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGA 207 (237)
T ss_dssp TGGSSHHHHHHHHHHHHHHT-SEEEEEETTS----S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-
T ss_pred cccccHHHHHHHHHHHHHcCCeEEEeeCccCC---cCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCC
Confidence 22246777888888887775443333455653 467788888887765 34 7777777655443 45567788899
Q ss_pred Ceee
Q 017943 243 QRIG 246 (363)
Q Consensus 243 ~rig 246 (363)
++|.
T Consensus 208 ~~id 211 (237)
T PF00682_consen 208 DRID 211 (237)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9974
No 139
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=91.74 E-value=4 Score=41.45 Aligned_cols=145 Identities=10% Similarity=0.052 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 017943 76 RITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (363)
Q Consensus 76 ~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (363)
.+.+..++.+++.|+..+.+..+.+. ++.+..+++.++ +
T Consensus 95 Dvv~~fv~~A~~~Gvd~irif~~lnd-----------~~n~~~~i~~ak------------------------------~ 133 (467)
T PRK14041 95 DVVELFVKKVAEYGLDIIRIFDALND-----------IRNLEKSIEVAK------------------------------K 133 (467)
T ss_pred hhhHHHHHHHHHCCcCEEEEEEeCCH-----------HHHHHHHHHHHH------------------------------H
Confidence 45666788888999998877665321 333444454443 2
Q ss_pred CCcEEEEEEEeeCC--CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCCh-
Q 017943 156 KKIYVRLLLSIDRR--ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNK- 231 (363)
Q Consensus 156 ~gi~~~li~~~~r~--~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~-~gl~~~~HagE~~~~- 231 (363)
.|..+...+|.... .+++...+.++.+.+...+.|.=-|.+| ...|.....++...++ .++++.+|+.-+.+-
T Consensus 134 ~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G---~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA 210 (467)
T PRK14041 134 HGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAG---LLTPKRAYELVKALKKKFGVPVEVHSHCTTGLA 210 (467)
T ss_pred CCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCccC---CcCHHHHHHHHHHHHHhcCCceEEEecCCCCcH
Confidence 34444433333322 2344445555555544222222224445 2456777777776654 479999998876654
Q ss_pred -hhHHHHHhcCCCeeeEecc---------cCHHHHHHHhcCCC
Q 017943 232 -EEIQSMLDFLPQRIGHACC---------FEEEEWRKLKSSKI 264 (363)
Q Consensus 232 -~~i~~~l~~g~~rigHg~~---------~~~~~~~~l~~~~i 264 (363)
.+...|++.|++++.=.+. ..++++..|...|+
T Consensus 211 ~AN~laAieaGad~vD~sv~~~g~gagN~atE~lv~~L~~~g~ 253 (467)
T PRK14041 211 SLAYLAAVEAGADMFDTAISPFSMGTSQPPFESMYYAFRENGK 253 (467)
T ss_pred HHHHHHHHHhCCCEEEeeccccCCCCCChhHHHHHHHHHhcCC
Confidence 4556788889888643221 12455666665543
No 140
>PRK08185 hypothetical protein; Provisional
Probab=91.71 E-value=10 Score=35.99 Aligned_cols=186 Identities=10% Similarity=-0.033 Sum_probs=114.2
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeee-Ee
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG-HA 248 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rig-Hg 248 (363)
.+.+.+...++-|.+.+.+.|+.+.-....+ .+.....-+...|++..+|+.+|+.-..+.+.+..+++.|.+.+- =|
T Consensus 21 ~n~e~~~avi~AAee~~sPvIl~~~~~~~~~-~~~~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~ 99 (283)
T PRK08185 21 ADSCFLRAVVEEAEANNAPAIIAIHPNELDF-LGDNFFAYVRERAKRSPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDG 99 (283)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCcchhhh-ccHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeC
Confidence 3568888899999988887777765433222 122333334456888999999999887777888889988865431 12
Q ss_pred cccC--------HHHHHHHhcCCCcEEEccccccccccc--------cC-CCCcc--HHHHHHc-CCC---EEecCCCCC
Q 017943 249 CCFE--------EEEWRKLKSSKIPVEICLTSNIRTETI--------SS-LDIHH--FVDLYKA-QHP---LVLCTDDSG 305 (363)
Q Consensus 249 ~~~~--------~~~~~~l~~~~i~ve~cPtSN~~l~~~--------~~-~~~~p--i~~l~~~-Gv~---v~l~TDd~~ 305 (363)
-.++ .+..++....|+++|.-.-. ++.. ++ +-..| ..++.+. |+- +++||=-..
T Consensus 100 S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~---vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~ 176 (283)
T PRK08185 100 SLLPYEENVALTKEVVELAHKVGVSVEGELGT---IGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGI 176 (283)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEee---ccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCC
Confidence 2222 24567778889999754422 1211 00 01133 3667766 764 455554322
Q ss_pred cc-------CCChHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 017943 306 VF-------STSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 359 (363)
Q Consensus 306 ~~-------~~~l~~E~~~~~~~-------~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~ 359 (363)
+- +.++..+++..... -|++.++++++..+++.-.=+.-+.+....+.+.+..+
T Consensus 177 y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~ 244 (283)
T PRK08185 177 YPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGKINISSDMKYAFFKKVREILS 244 (283)
T ss_pred cCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHH
Confidence 21 12334444433221 25678889888888888887777777777777766654
No 141
>PRK08392 hypothetical protein; Provisional
Probab=91.52 E-value=0.45 Score=43.06 Aligned_cols=70 Identities=9% Similarity=-0.015 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccC-CChHHHHHHHHHHCCCCHHHHH
Q 017943 253 EEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASAFSLGRREMF 330 (363)
Q Consensus 253 ~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~-~~l~~E~~~~~~~~~l~~~~l~ 330 (363)
++.++.++++|+.+|++- + ...++ ..-++.+.+.|+|+++|||.=.... .. .++...+++.+|++.+++.
T Consensus 140 ~~i~~~~~~~g~~lEiNt-~----~~~p~--~~~l~~~~~~G~~~~igSDAH~~~~vg~-~~~a~~~~~~~g~~~~~~~ 210 (215)
T PRK08392 140 KEILDLAEAYGKAFEISS-R----YRVPD--LEFIRECIKRGIKLTFASDAHRPEDVGN-VSWSLKVFKKAGGKKEDLL 210 (215)
T ss_pred HHHHHHHHHhCCEEEEeC-C----CCCCC--HHHHHHHHHcCCEEEEeCCCCChHHCCc-HHHHHHHHHHcCCCHHHee
Confidence 356899999999999983 1 11111 1225677889999999999533333 23 5667777788999998854
No 142
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=91.52 E-value=11 Score=38.14 Aligned_cols=145 Identities=12% Similarity=0.040 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCC
Q 017943 77 ITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGK 156 (363)
Q Consensus 77 ~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (363)
+..+.++.+++.|+..+.+..+.+.. +.+.+.++.++ +.
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~-----------~n~~~~v~~ak------------------------------~~ 135 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDV-----------RNLETAVKATK------------------------------KA 135 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH-----------HHHHHHHHHHH------------------------------Hc
Confidence 56678888899999998887664321 12333444332 23
Q ss_pred CcEEEEEEEeeC--CCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCCh--
Q 017943 157 KIYVRLLLSIDR--RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNK-- 231 (363)
Q Consensus 157 gi~~~li~~~~r--~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~-~gl~~~~HagE~~~~-- 231 (363)
|..+...+|..- ..+++...+.++.+.+...+.|.=-|.+| ...|.....++...++ .++++.+|+.-+.+-
T Consensus 136 G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G---~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~ 212 (448)
T PRK12331 136 GGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAG---ILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAE 212 (448)
T ss_pred CCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHH
Confidence 445443333322 13445555555555554332222234455 2456777777777655 479999998776653
Q ss_pred hhHHHHHhcCCCeeeEecc---------cCHHHHHHHhcCCCc
Q 017943 232 EEIQSMLDFLPQRIGHACC---------FEEEEWRKLKSSKIP 265 (363)
Q Consensus 232 ~~i~~~l~~g~~rigHg~~---------~~~~~~~~l~~~~i~ 265 (363)
.+...|++.|++++.=++. ..++++..|...|+.
T Consensus 213 AN~laAieaGad~vD~sv~glg~gaGN~~tE~lv~~L~~~g~~ 255 (448)
T PRK12331 213 MTYLKAIEAGADIIDTAISPFAGGTSQPATESMVAALQDLGYD 255 (448)
T ss_pred HHHHHHHHcCCCEEEeeccccCCCcCCHhHHHHHHHHHhcCCC
Confidence 4566788889888643221 124555566555543
No 143
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=91.51 E-value=10 Score=36.53 Aligned_cols=140 Identities=13% Similarity=0.059 Sum_probs=74.7
Q ss_pred hhhHHHHHHHHHHcCCceeeecCCCCCh--------hhHHHHHhc---CCCeeeEeccc-CHHHHHHHhcC--CCcEEEc
Q 017943 204 WTTFLPALKFAREQGLQITLHCGEIPNK--------EEIQSMLDF---LPQRIGHACCF-EEEEWRKLKSS--KIPVEIC 269 (363)
Q Consensus 204 ~~~~~~~~~~A~~~gl~~~~HagE~~~~--------~~i~~~l~~---g~~rigHg~~~-~~~~~~~l~~~--~i~ve~c 269 (363)
...+.++++.+++.|+++.+|++...-. +.+..++.+ -++-=-|..++ +.+.++.+++. +|..|+|
T Consensus 112 ~~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~~~~~~~~lA~~~p~~~v~i~Hvst~~~~~~i~~ak~~vt~Et~ 191 (335)
T cd01294 112 LEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVLEPLAQRFPKLKIVLEHITTADAVEYVKSCNENVAATIT 191 (335)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCcccccchhhHHHHHHHHHHHHHHcCCCeEEEecccHHHHHHHHHhCCCCcEEEEc
Confidence 3578999999999999999999653211 111112211 12211344444 35556666543 6999999
Q ss_pred cccccccc-cc------cCCC-CccHH---------HHHHcCCCE-EecCCCCCc-----------cC-CCh---HHHHH
Q 017943 270 LTSNIRTE-TI------SSLD-IHHFV---------DLYKAQHPL-VLCTDDSGV-----------FS-TSV---SREYD 316 (363)
Q Consensus 270 PtSN~~l~-~~------~~~~-~~pi~---------~l~~~Gv~v-~l~TDd~~~-----------~~-~~l---~~E~~ 316 (363)
|--=.... .+ +.+. .+|+| +.++.|.-= .|+||-... .| .++ .--+.
T Consensus 192 ph~L~l~~~~~~~~~~g~~~k~~PPlR~~~d~~~L~~~l~~G~id~~i~SDHaP~~~~~K~~~~g~~Gi~~~~~~l~~~~ 271 (335)
T cd01294 192 PHHLLLTRDDLLGGGLNPHLYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHPKSNKESSCGCAGIFSAPIALPYLA 271 (335)
T ss_pred hhHheeeHHHhcCCCCCCCeEEcCCCCCHHHHHHHHHHHHcCCCCeEEECCCCCCCCccccCCCCCccccCHHHHHHHHH
Confidence 95211111 00 0011 24543 334556443 699996322 23 221 11121
Q ss_pred HHHHHCCCCHHHHHHH-HHHHHHHcCCCh
Q 017943 317 LAASAFSLGRREMFQL-AKSAVKFIFANG 344 (363)
Q Consensus 317 ~~~~~~~l~~~~l~~l-~~na~~~sf~~~ 344 (363)
...+. +++.+++.++ +.|.++---+.+
T Consensus 272 ~~~~~-~l~l~~~v~~~s~nPA~i~gl~~ 299 (335)
T cd01294 272 EVFEE-HNALDKLEAFASDNGPNFYGLPP 299 (335)
T ss_pred HHHhc-cCCHHHHHHHHHhHHHHHhCCCC
Confidence 22333 8999997655 588888776644
No 144
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.49 E-value=4.5 Score=36.66 Aligned_cols=92 Identities=11% Similarity=0.079 Sum_probs=60.9
Q ss_pred CCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeE--ecccCHHHHHHHhcCCCcEEEccccccccc
Q 017943 200 TKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH--ACCFEEEEWRKLKSSKIPVEICLTSNIRTE 277 (363)
Q Consensus 200 ~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigH--g~~~~~~~~~~l~~~~i~ve~cPtSN~~l~ 277 (363)
...+|..-.++.+.|+++|+++..=+ ..+.++..+++.|++-+.= .-.+.++.++.++..--.+-+||+..+
T Consensus 91 FivsP~~~~~v~~~~~~~~i~~iPG~---~T~~E~~~A~~~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~atGGI--- 164 (213)
T PRK06552 91 FIVSPSFNRETAKICNLYQIPYLPGC---MTVTEIVTALEAGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMVTGGV--- 164 (213)
T ss_pred EEECCCCCHHHHHHHHHcCCCEECCc---CCHHHHHHHHHcCCCEEEECCcccCCHHHHHHHhhhCCCCEEEEECCC---
Confidence 33345555677888999999987643 3567788888899988762 112345667777654333556776432
Q ss_pred cccCCCCccHHHHHHcCC-CEEecCC
Q 017943 278 TISSLDIHHFVDLYKAQH-PLVLCTD 302 (363)
Q Consensus 278 ~~~~~~~~pi~~l~~~Gv-~v~l~TD 302 (363)
....+.+++++|+ -+++||.
T Consensus 165 -----~~~N~~~~l~aGa~~vavgs~ 185 (213)
T PRK06552 165 -----NLDNVKDWFAAGADAVGIGGE 185 (213)
T ss_pred -----CHHHHHHHHHCCCcEEEEchH
Confidence 3467999999995 4677765
No 145
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=91.49 E-value=11 Score=35.29 Aligned_cols=132 Identities=12% Similarity=0.086 Sum_probs=82.7
Q ss_pred HHHHHHhcCCeEEEEeeCCCc-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC
Q 017943 81 VVEDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK 157 (363)
Q Consensus 81 ~~~~~~~~gV~y~E~r~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 157 (363)
-++.+...|+..+.+.++... + ..-|.+.++.++.+.+.++.+++ .|
T Consensus 83 ~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~------------------------------~G 132 (273)
T cd07941 83 NLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKS------------------------------HG 132 (273)
T ss_pred HHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH------------------------------cC
Confidence 456677789988877666442 1 23467888888888888887653 34
Q ss_pred cEEEEEE-Ee---eCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C-CceeeecCCCCCh
Q 017943 158 IYVRLLL-SI---DRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G-LQITLHCGEIPNK 231 (363)
Q Consensus 158 i~~~li~-~~---~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~-g-l~~~~HagE~~~~ 231 (363)
+.+.+.. .+ .| .+++...+.++.+.+...+.|.=.|..| ...|..+...++..++. + +++.+|+.-+.+-
T Consensus 133 ~~v~~~~~~~~d~~~-~~~~~~~~~~~~~~~~g~~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gl 208 (273)
T cd07941 133 REVIFDAEHFFDGYK-ANPEYALATLKAAAEAGADWLVLCDTNG---GTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGL 208 (273)
T ss_pred CeEEEeEEeccccCC-CCHHHHHHHHHHHHhCCCCEEEEecCCC---CCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCc
Confidence 5554421 11 24 3566666777776665433333335555 34677888888876653 4 7788888765543
Q ss_pred --hhHHHHHhcCCCeee
Q 017943 232 --EEIQSMLDFLPQRIG 246 (363)
Q Consensus 232 --~~i~~~l~~g~~rig 246 (363)
.+...+++.|++++.
T Consensus 209 a~An~laA~~aGa~~id 225 (273)
T cd07941 209 AVANSLAAVEAGATQVQ 225 (273)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 455667788988764
No 146
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=91.48 E-value=4.7 Score=36.29 Aligned_cols=89 Identities=17% Similarity=0.056 Sum_probs=54.6
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCee--eEecccC-HHHHHHHhcCCCcEEEccccccccccc
Q 017943 203 EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI--GHACCFE-EEEWRKLKSSKIPVEICLTSNIRTETI 279 (363)
Q Consensus 203 ~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~ri--gHg~~~~-~~~~~~l~~~~i~ve~cPtSN~~l~~~ 279 (363)
+|..-.++.+.|+++|+++..=+ ..+.++..++++|++-+ =.+-.+. +.-++-|+.-=-.+.++||. ++
T Consensus 86 sP~~~~~v~~~~~~~~i~~iPG~---~TptEi~~A~~~Ga~~vKlFPA~~~GG~~yikal~~plp~i~~~ptG-----GV 157 (204)
T TIGR01182 86 SPGLTPELAKHAQDHGIPIIPGV---ATPSEIMLALELGITALKLFPAEVSGGVKMLKALAGPFPQVRFCPTG-----GI 157 (204)
T ss_pred CCCCCHHHHHHHHHcCCcEECCC---CCHHHHHHHHHCCCCEEEECCchhcCCHHHHHHHhccCCCCcEEecC-----CC
Confidence 33344577889999999987632 35678888999997653 2333332 45555555422234456653 32
Q ss_pred cCCCCccHHHHHHcCCC-EEecCC
Q 017943 280 SSLDIHHFVDLYKAQHP-LVLCTD 302 (363)
Q Consensus 280 ~~~~~~pi~~l~~~Gv~-v~l~TD 302 (363)
....+.+|+++|.- +++||+
T Consensus 158 ---~~~N~~~~l~aGa~~vg~Gs~ 178 (204)
T TIGR01182 158 ---NLANVRDYLAAPNVACGGGSW 178 (204)
T ss_pred ---CHHHHHHHHhCCCEEEEEChh
Confidence 33578999999964 344443
No 147
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=91.48 E-value=9.5 Score=37.38 Aligned_cols=137 Identities=10% Similarity=0.081 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHcCC------ceeeecCCCCCh-hhHHHHHhc-CC--CeeeEecc-cCHH----HHHHHhcCCCcEEEc
Q 017943 205 TTFLPALKFAREQGL------QITLHCGEIPNK-EEIQSMLDF-LP--QRIGHACC-FEEE----EWRKLKSSKIPVEIC 269 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl------~~~~HagE~~~~-~~i~~~l~~-g~--~rigHg~~-~~~~----~~~~l~~~~i~ve~c 269 (363)
..+.++...++..+. .+++|.++.... +.+.+++.- |. .++-|+.. .+.+ .++ ..++|..+.+.
T Consensus 169 ~~~~~~~~~a~~~~~~~~~~~~~~vh~~~~~~~~~~i~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~v~i~ 247 (387)
T cd01308 169 EELARIAAEARVGGLLGGKAGIVHIHLGDGKRALSPIFELIEETEIPITQFLPTHINRTAPLFEQGVE-FAKMGGTIDLT 247 (387)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEeCCchHHHHHHHHHHHhcCCCcceeECCcccCCHHHHHHHHH-HHHcCCcEEEE
Confidence 455566666654332 488889876321 233343432 54 34444432 2333 334 44466655443
Q ss_pred c-ccccccccccCCC-CccHHHHHHcCCC---EEecCCC----CCcc-----------C-CChHHHHHHHHHHCCCCHHH
Q 017943 270 L-TSNIRTETISSLD-IHHFVDLYKAQHP---LVLCTDD----SGVF-----------S-TSVSREYDLAASAFSLGRRE 328 (363)
Q Consensus 270 P-tSN~~l~~~~~~~-~~pi~~l~~~Gv~---v~l~TDd----~~~~-----------~-~~l~~E~~~~~~~~~l~~~~ 328 (363)
- ++...... +.+. ...++.+++.|++ ++++||- |... + .++..++..+....++++++
T Consensus 248 ~~~~~~~~~~-~~~~~~~~l~~~~~~g~~~d~i~l~TD~~~~~p~~~~~g~~~~~g~~~~~~~~~~~~~~v~~~~i~~~~ 326 (387)
T cd01308 248 SSIDPQFRKE-GEVRPSEALKRLLEQGVPLERITFSSDGNGSLPKFDENGNLVGLGVGSVDTLLREVREAVKCGDIPLEV 326 (387)
T ss_pred CCCCcccccc-CccChHHHHHHHHHhCCCCCcEEEEECCCCCcccCccCCeEEecCcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 2 22222210 0001 1335688899973 8999993 2111 1 24667777776666799999
Q ss_pred HHHH-HHHHHHHcCCC
Q 017943 329 MFQL-AKSAVKFIFAN 343 (363)
Q Consensus 329 l~~l-~~na~~~sf~~ 343 (363)
+.++ +.|+++..-++
T Consensus 327 al~~~T~npA~~lg~~ 342 (387)
T cd01308 327 ALRVITSNVARILKLR 342 (387)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 6654 58999887665
No 148
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=91.43 E-value=8.3 Score=36.39 Aligned_cols=188 Identities=11% Similarity=0.000 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCC-ChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCee----
Q 017943 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKG-EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI---- 245 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~-~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~ri---- 245 (363)
+.|.....++.|.+.+.+.|+++.-.+..+.+ ......-+-..|+++++|+.+|..-..+.+.+.++++.|-..+
T Consensus 27 nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~ai~~GFsSvMiDg 106 (286)
T COG0191 27 NLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHGASFEDCKQAIRAGFSSVMIDG 106 (286)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHhcCCceEEecC
Confidence 45888889999988888888887765544443 2233444566789999999999987767778888888775442
Q ss_pred eEec-----ccCHHHHHHHhcCCCcEEEccccccccccccC---------CCCcc--HHHHHHcC----CCEEecCCCCC
Q 017943 246 GHAC-----CFEEEEWRKLKSSKIPVEICLTSNIRTETISS---------LDIHH--FVDLYKAQ----HPLVLCTDDSG 305 (363)
Q Consensus 246 gHg~-----~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~---------~~~~p--i~~l~~~G----v~v~l~TDd~~ 305 (363)
.|-- .++.+.+++....|+.||.-.- .+|+..+ .-..| ..++.+.+ +-++|||==..
T Consensus 107 S~~~~eENi~~tkevv~~ah~~gvsVEaElG---~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~ 183 (286)
T COG0191 107 SHLPFEENIAITKEVVEFAHAYGVSVEAELG---TLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGV 183 (286)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCcEEEEec---cccCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccC
Confidence 1221 1235788999999999986443 1222222 01233 34555554 35677775322
Q ss_pred cc------CCChHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhc
Q 017943 306 VF------STSVSREYDLAAS-------AFSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEKKL 361 (363)
Q Consensus 306 ~~------~~~l~~E~~~~~~-------~~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~~~ 361 (363)
+- +.+...+.+.... .-|.+.+|+++....++.-.=++-+.+......+.++.+++
T Consensus 184 Yk~~~p~L~~~~L~~i~~~~~~PlVlHGgSGip~~eI~~aI~~GV~KvNi~Td~~~A~~~avr~~~~~~ 252 (286)
T COG0191 184 YKPGNPKLDFDRLKEIQEAVSLPLVLHGGSGIPDEEIREAIKLGVAKVNIDTDLQLAFTAAVREYLAEN 252 (286)
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHhCceEEeeCcHHHHHHHHHHHHHHHhC
Confidence 21 2344455555443 13778899999999999988888888888888888887665
No 149
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=91.25 E-value=9.9 Score=33.51 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeE--ecccCHHHHHHHhcCCCcEEEccccccccccccCCCCc
Q 017943 208 LPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH--ACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIH 285 (363)
Q Consensus 208 ~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigH--g~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~ 285 (363)
.++.+.++++|.++.. +..+++++..+++.|++-++= .....++.++.+++.-..+-+|++. ++ ...
T Consensus 87 ~~~~~~~~~~~~~~i~---gv~t~~e~~~A~~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p~~a~G-----GI---~~~ 155 (190)
T cd00452 87 PEVVKAANRAGIPLLP---GVATPTEIMQALELGADIVKLFPAEAVGPAYIKALKGPFPQVRFMPTG-----GV---SLD 155 (190)
T ss_pred HHHHHHHHHcCCcEEC---CcCCHHHHHHHHHCCCCEEEEcCCcccCHHHHHHHHhhCCCCeEEEeC-----CC---CHH
Confidence 4567778888888765 233567778888899988762 1112345666665432224445543 22 335
Q ss_pred cHHHHHHcCCC
Q 017943 286 HFVDLYKAQHP 296 (363)
Q Consensus 286 pi~~l~~~Gv~ 296 (363)
.+.++++.|+.
T Consensus 156 n~~~~~~~G~~ 166 (190)
T cd00452 156 NAAEWLAAGVV 166 (190)
T ss_pred HHHHHHHCCCE
Confidence 78999999965
No 150
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=91.24 E-value=11 Score=38.24 Aligned_cols=199 Identities=15% Similarity=0.116 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHhccCCCCCc-----cchHHHHhhcCCCHHHHHHhhhHH------H------hhc---CCHHHHHHHHH
Q 017943 20 IRDSTLLELARVLGEKGVIVF-----SDVEHVIMKSDRSLHEVFKLFDLI------H------VLT---TDHATVTRITQ 79 (363)
Q Consensus 20 i~~~~l~~la~~~~~~~~~~~-----~~~~~~~~~~~~~l~~f~~~f~~~------~------~~~---~~~e~~~~~~~ 79 (363)
++.+.++.+|..+.+.|+... +++...+....++-.+.++.+... . .++ .+++| +.+
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypdd---vv~ 108 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADD---IVD 108 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcch---HHH
Confidence 788888888887666665421 122221111223444445544321 1 111 12334 555
Q ss_pred HHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcE
Q 017943 80 EVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIY 159 (363)
Q Consensus 80 ~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 159 (363)
.+++.+++.|+..+.+.-..+ .++.+..+++.++ +.|..
T Consensus 109 ~fv~~a~~~Gidi~Rifd~ln-----------d~~n~~~ai~~ak------------------------------~~G~~ 147 (468)
T PRK12581 109 KFISLSAQNGIDVFRIFDALN-----------DPRNIQQALRAVK------------------------------KTGKE 147 (468)
T ss_pred HHHHHHHHCCCCEEEEcccCC-----------CHHHHHHHHHHHH------------------------------HcCCE
Confidence 678899999999986654422 1333444444433 23444
Q ss_pred EEEEEEeeCC--CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCCh--hhH
Q 017943 160 VRLLLSIDRR--ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNK--EEI 234 (363)
Q Consensus 160 ~~li~~~~r~--~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~-~gl~~~~HagE~~~~--~~i 234 (363)
+...+|..-+ ...+-..+.++.+.+...+.|.=-|.+| ...|.....++...++ .++++.+|+.-+.+- .+.
T Consensus 148 ~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG---~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~ 224 (468)
T PRK12581 148 AQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAG---ILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTY 224 (468)
T ss_pred EEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCC---CcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHH
Confidence 4444443322 2223344445555444322222224444 3456777777777665 368999998776654 456
Q ss_pred HHHHhcCCCeeeEecc-c--------CHHHHHHHhcCCCc
Q 017943 235 QSMLDFLPQRIGHACC-F--------EEEEWRKLKSSKIP 265 (363)
Q Consensus 235 ~~~l~~g~~rigHg~~-~--------~~~~~~~l~~~~i~ 265 (363)
..|++.|++++.=++. + .++++..|...|+.
T Consensus 225 laAieAGad~vD~ai~g~g~gagN~~tE~lv~~L~~~g~~ 264 (468)
T PRK12581 225 LAAVEAGADRIDTALSPFSEGTSQPATESMYLALKEAGYD 264 (468)
T ss_pred HHHHHcCCCEEEeeccccCCCcCChhHHHHHHHHHhcCCC
Confidence 6788889888643321 1 13455556555543
No 151
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=91.13 E-value=6 Score=37.48 Aligned_cols=186 Identities=10% Similarity=0.004 Sum_probs=113.7
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHH-HHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeee-E
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG-H 247 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~-~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rig-H 247 (363)
.+.+.+...++-|.+.+.+.|+.+.-....+ .+.+.+.. +...|++.++|+.+|..-..+.+.+..+++.|-+.+= =
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~~~~~~~~-~g~~~~~~~~~~~a~~~~VPValHLDH~~~~e~i~~ai~~GftSVMiD 104 (284)
T PRK12737 26 HNLETLQVVVETAAELRSPVILAGTPGTFSY-AGTDYIVAIAEVAARKYNIPLALHLDHHEDLDDIKKKVRAGIRSVMID 104 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCccHHhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEec
Confidence 3458888899999888877677654332222 23344555 4556788899999999877777888888988866531 1
Q ss_pred eccc--------CHHHHHHHhcCCCcEEEcccccccccccc---------CCCCcc--HHHHHH-cCC---CEEecCCCC
Q 017943 248 ACCF--------EEEEWRKLKSSKIPVEICLTSNIRTETIS---------SLDIHH--FVDLYK-AQH---PLVLCTDDS 304 (363)
Q Consensus 248 g~~~--------~~~~~~~l~~~~i~ve~cPtSN~~l~~~~---------~~~~~p--i~~l~~-~Gv---~v~l~TDd~ 304 (363)
|..+ +.+..++....|+.||.-.-. +++.. ..-+.| ..+|.+ -|| -|++||==.
T Consensus 105 gS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~---igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG 181 (284)
T PRK12737 105 GSHLSFEENIAIVKEVVEFCHRYDASVEAELGR---LGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHG 181 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee---ccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCcccc
Confidence 2222 235677888889998743321 11100 111234 345553 555 356666321
Q ss_pred Cc-----cCCChHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 017943 305 GV-----FSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 359 (363)
Q Consensus 305 ~~-----~~~~l~~E~~~~~~~-------~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~ 359 (363)
.+ .+.++..|++..... -|++.++++++..+++.-.=+.-+.|....+.+.+..+
T Consensus 182 ~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 248 (284)
T PRK12737 182 LYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVNVATELKIAFSDAVKKYFY 248 (284)
T ss_pred ccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 11 223456666655431 26788888888888888877777777666666665543
No 152
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=91.01 E-value=13 Score=35.31 Aligned_cols=187 Identities=9% Similarity=0.033 Sum_probs=112.1
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHH-HHHHcC--CceeeecCCCCChhhHHHHHhcCCCee-
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQG--LQITLHCGEIPNKEEIQSMLDFLPQRI- 245 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~-~A~~~g--l~~~~HagE~~~~~~i~~~l~~g~~ri- 245 (363)
.+.+.+...++-|.+.+.+.|+.+.-....+..+.+.+..+.. .|++.. +|+.+|..-..+.+.+..++++|-+.+
T Consensus 26 ~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~GftSVM 105 (286)
T PRK08610 26 NNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGFTSVM 105 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 3567888888888888877676665432232223454555554 466666 899999988777788888898886653
Q ss_pred eEecccC--------HHHHHHHhcCCCcEEEccccccccccccC-------CCCcc--HHHHHHc-CC---CEEecCCCC
Q 017943 246 GHACCFE--------EEEWRKLKSSKIPVEICLTSNIRTETISS-------LDIHH--FVDLYKA-QH---PLVLCTDDS 304 (363)
Q Consensus 246 gHg~~~~--------~~~~~~l~~~~i~ve~cPtSN~~l~~~~~-------~~~~p--i~~l~~~-Gv---~v~l~TDd~ 304 (363)
-=|..++ .+.+++....|+.||.-.-. +++..+ .-+.| ..+|.+. || -|++||=-.
T Consensus 106 ~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~---vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG 182 (286)
T PRK08610 106 IDASHSPFEENVATTKKVVEYAHEKGVSVEAELGT---VGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHG 182 (286)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEec---cCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeecccccc
Confidence 1122222 35677777889998753321 111110 11234 4566643 66 356666432
Q ss_pred Cc-----cCCChHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 017943 305 GV-----FSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 359 (363)
Q Consensus 305 ~~-----~~~~l~~E~~~~~~~-------~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~ 359 (363)
.+ .+.++..|++..... -|++.+++.++..++|.-.=+.-+.+....+.+.+..+
T Consensus 183 ~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~ 249 (286)
T PRK08610 183 PYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQIASAKAVRDVLN 249 (286)
T ss_pred ccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHHHHHHHHHHHHHHH
Confidence 22 123445555444321 26677888888888887777777777776666666543
No 153
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=90.97 E-value=7.9 Score=36.64 Aligned_cols=186 Identities=11% Similarity=0.005 Sum_probs=110.1
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHH-HHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeee--
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFL-PALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG-- 246 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~-~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rig-- 246 (363)
.+.+.+...++-|.+.+.+.|+.+.-..-.+ .+.+.+. -+...|++..+|+.+|..-..+.+.+..+++.|.+.+-
T Consensus 26 ~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~-~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d 104 (281)
T PRK06806 26 ANMEMVMGAIKAAEELNSPIILQIAEVRLNH-SPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFD 104 (281)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhcc-CChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEc
Confidence 3568888889988888877666654322222 2333344 34456888999999999887777778889988876532
Q ss_pred --Eec-----ccCHHHHHHHhcCCCcEEEcccccccccccc------CCC-Ccc--HHHHHH-cCCC-EEe--cCCCC--
Q 017943 247 --HAC-----CFEEEEWRKLKSSKIPVEICLTSNIRTETIS------SLD-IHH--FVDLYK-AQHP-LVL--CTDDS-- 304 (363)
Q Consensus 247 --Hg~-----~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~------~~~-~~p--i~~l~~-~Gv~-v~l--~TDd~-- 304 (363)
|.. .+..+..++..+.|++++.-.. .+|... +.. ..| ..++.+ .|+- +++ ||==+
T Consensus 105 ~s~~~~~eni~~t~~v~~~a~~~gv~veaE~g---hlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~ 181 (281)
T PRK06806 105 GSHLPLEENIQKTKEIVELAKQYGATVEAEIG---RVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMY 181 (281)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEee---eECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCC
Confidence 211 1123567788888998863221 122111 111 122 345543 3664 333 44311
Q ss_pred ---CccCCChHHHHHHHHH-----HC--CCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 017943 305 ---GVFSTSVSREYDLAAS-----AF--SLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 359 (363)
Q Consensus 305 ---~~~~~~l~~E~~~~~~-----~~--~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~ 359 (363)
...+.+...++..... +- |++.+++.++..+++...-+..+.+....+.+.++.+
T Consensus 182 ~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~i~~a~~~a~~~~~~ 246 (281)
T PRK06806 182 NGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKINVATATFNSVITAVNNLVL 246 (281)
T ss_pred CCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHHHHHHHHHHHHHHHH
Confidence 1233455566655432 23 7899999998888887766666666566665555544
No 154
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=90.75 E-value=13 Score=36.36 Aligned_cols=132 Identities=15% Similarity=0.051 Sum_probs=80.5
Q ss_pred HHHHHhcCCeEEEEeeCCCc-cc--cCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc
Q 017943 82 VEDFASENIVYLELRTTPKR-NE--SIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI 158 (363)
Q Consensus 82 ~~~~~~~gV~y~E~r~~p~~-~~--~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 158 (363)
++.+.+-|+..+-+.++... +. ..+.+.+++++.+.+.++.+++ .|+
T Consensus 127 ie~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~------------------------------~Gl 176 (347)
T PLN02746 127 FEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKK------------------------------HSI 176 (347)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------cCC
Confidence 33445568887777765432 22 2468888889888888876643 455
Q ss_pred EEEEEEEe-------eCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C-CceeeecCCCC
Q 017943 159 YVRLLLSI-------DRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G-LQITLHCGEIP 229 (363)
Q Consensus 159 ~~~li~~~-------~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~-g-l~~~~HagE~~ 229 (363)
.++.-++. .| .+++...+.++.+.+...+.|.=-|..| ...|.....+++..++. + .++.+|+..+.
T Consensus 177 ~v~~~is~~fg~p~~~r-~~~~~l~~~~~~~~~~Gad~I~l~DT~G---~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~ 252 (347)
T PLN02746 177 PVRGYVSCVVGCPIEGP-VPPSKVAYVAKELYDMGCYEISLGDTIG---VGTPGTVVPMLEAVMAVVPVDKLAVHFHDTY 252 (347)
T ss_pred eEEEEEEeeecCCccCC-CCHHHHHHHHHHHHHcCCCEEEecCCcC---CcCHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 55533332 22 3566677777777665332222224444 24577787877776653 4 46888887665
Q ss_pred Ch--hhHHHHHhcCCCeeeE
Q 017943 230 NK--EEIQSMLDFLPQRIGH 247 (363)
Q Consensus 230 ~~--~~i~~~l~~g~~rigH 247 (363)
+- .+...+++.|++++.=
T Consensus 253 GlA~AN~lAA~~aGa~~vd~ 272 (347)
T PLN02746 253 GQALANILVSLQMGISTVDS 272 (347)
T ss_pred ChHHHHHHHHHHhCCCEEEE
Confidence 53 4567788889887643
No 155
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=90.68 E-value=0.79 Score=42.04 Aligned_cols=159 Identities=21% Similarity=0.167 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhhCCCceEEEecCCCCC---CCChhhHHHHHHHHHHcCCceeeecCCCCCh---------hhHHHHHh
Q 017943 172 TEAAMETVKLALEMRDLGVVGIDLSGNPT---KGEWTTFLPALKFAREQGLQITLHCGEIPNK---------EEIQSMLD 239 (363)
Q Consensus 172 ~e~~~~~~~~a~~~~~~~vvGidl~g~e~---~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~---------~~i~~~l~ 239 (363)
++.+.+.++.+.. ..+++|+-+..... ..++....++++.|.++|+++.+|+|-...+ ..+..++.
T Consensus 83 ~~~~~~~l~~~~~--~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~~~~~~~~~~~~~~~~ 160 (273)
T PF04909_consen 83 PEDAVEELERALQ--ELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLIHTGMTGFPDAPSDPADPEELEELLE 160 (273)
T ss_dssp HHHHHHHHHHHHH--TTTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEEEESHTHHHHHHHHHHHHHHHTTHHH
T ss_pred chhHHHHHHHhcc--ccceeeeEecCCCCccccccHHHHHHHHHHHHhhccceeeeccccchhhhhHHHHHHHHHHHHHH
Confidence 5555555555552 23687887653221 2233334599999999999999998611111 11112222
Q ss_pred cCCC-e--eeEeccc---CHHHHHHHhcC-CCcEEEcccc-ccccccccCCCCccHHHHHHc-CC-CEEecCCCCCccCC
Q 017943 240 FLPQ-R--IGHACCF---EEEEWRKLKSS-KIPVEICLTS-NIRTETISSLDIHHFVDLYKA-QH-PLVLCTDDSGVFST 309 (363)
Q Consensus 240 ~g~~-r--igHg~~~---~~~~~~~l~~~-~i~ve~cPtS-N~~l~~~~~~~~~pi~~l~~~-Gv-~v~l~TDd~~~~~~ 309 (363)
-.|+ | +.|+-.. -.+.++++.+. ++.+.++-.. +...... ......+..+++. |. +|..|||-|.....
T Consensus 161 ~~P~l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~s~~~~~~~~~~~-~~~~~~l~~~~~~~g~drilfGSD~P~~~~~ 239 (273)
T PF04909_consen 161 RFPDLRIILAHLGGPFPWWEEALRLLDRFPNVYVDLSGIPPFWYFWPP-SFDRPFLRRAVDEFGPDRILFGSDYPHPDGA 239 (273)
T ss_dssp HSTTSEEEESGGGTTHHHHHHHHHHHHHHTTEEEECHSHHSSEEEETT-HHCHHHHHHHHHHHTGGGEEEE--TTSSTHH
T ss_pred HhcCCeEEEecCcccchhHHHHHHHHHhCCcccccccccccccccCcc-cccHHHHHHHHHHhCCceEEecCCCCCCCcc
Confidence 2343 4 4676544 23556655543 4554432210 0000000 0012334554433 33 69999998876653
Q ss_pred ChHHHHHHHHHHCCCCHHHHHHHH
Q 017943 310 SVSREYDLAASAFSLGRREMFQLA 333 (363)
Q Consensus 310 ~l~~E~~~~~~~~~l~~~~l~~l~ 333 (363)
.-............++.++..++.
T Consensus 240 ~~~~~~~~~~~~~~l~~~~~~~i~ 263 (273)
T PF04909_consen 240 SPYEYIWEAYFLDDLSEEEREKIL 263 (273)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHH
T ss_pred ccHHHHHHhhhccCCCHHHHHHHH
Confidence 222332222221124555555543
No 156
>PRK13404 dihydropyrimidinase; Provisional
Probab=90.64 E-value=21 Score=36.30 Aligned_cols=134 Identities=10% Similarity=-0.020 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHHcCCce-eeecCCCCChhhHHHHHhcCCCeee----EecccCHHHHHHHhcCCCcEEEcccccccccc
Q 017943 204 WTTFLPALKFAREQGLQI-TLHCGEIPNKEEIQSMLDFLPQRIG----HACCFEEEEWRKLKSSKIPVEICLTSNIRTET 278 (363)
Q Consensus 204 ~~~~~~~~~~A~~~gl~~-~~HagE~~~~~~i~~~l~~g~~rig----Hg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~ 278 (363)
......++.+|++.|.++ .+|++=....+.+..+-..|..-.. |-..++++.+......|..+-++|.. ...
T Consensus 220 ~~~v~~~~~la~~~g~~~hi~Hvs~~~~~~~i~~~k~~g~~vt~e~~ph~L~l~~~~~~~~~~~g~~~k~~Ppl--r~~- 296 (477)
T PRK13404 220 REATHRAIALAELVDVPILIVHVSGREAAEQIRRARGRGLKIFAETCPQYLFLTAEDLDRPGMEGAKYICSPPP--RDK- 296 (477)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEChhhhccCHHHhcCccccCCceEECCCC--CCh-
Confidence 345777888999999998 6688521111223333334543322 45566776654333357777778742 111
Q ss_pred ccCCCCccHHHHHHcCCCEEecCCCCCccC------------CChH--------HHHH------HHHHHCCCCHHHHHH-
Q 017943 279 ISSLDIHHFVDLYKAQHPLVLCTDDSGVFS------------TSVS--------REYD------LAASAFSLGRREMFQ- 331 (363)
Q Consensus 279 ~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~------------~~l~--------~E~~------~~~~~~~l~~~~l~~- 331 (363)
-....+.+.+..|.--+|+||-....- .++. -|+. .+....+++.+++.+
T Consensus 297 ---~d~~aL~~~l~~G~id~i~sDHap~~~~eK~~~~~~~~~~~~~~~~~G~~gie~~l~~ll~~~v~~~~ls~~~~~~~ 373 (477)
T PRK13404 297 ---ANQEAIWNGLADGTFEVFSSDHAPFRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVVKGRISLNRFVAL 373 (477)
T ss_pred ---HHHHHHHHHHhCCCceEEecCCCCCCcccchhhhhccCCCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 122457778889999999999543320 0111 1221 222234689999655
Q ss_pred HHHHHHHHcCCC
Q 017943 332 LAKSAVKFIFAN 343 (363)
Q Consensus 332 l~~na~~~sf~~ 343 (363)
++.|+++...+.
T Consensus 374 ~t~~pA~~lgl~ 385 (477)
T PRK13404 374 TSTNPAKLYGLY 385 (477)
T ss_pred HHHHHHHHhCCC
Confidence 568999987763
No 157
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=90.63 E-value=12 Score=39.11 Aligned_cols=181 Identities=13% Similarity=0.133 Sum_probs=99.5
Q ss_pred CCCHHHHHHHHHHhccCCCCCcc-----chHHHHhhcCCCHHHHHHhhhH-H-----Hhhc---------CCHHHHHHHH
Q 017943 19 SIRDSTLLELARVLGEKGVIVFS-----DVEHVIMKSDRSLHEVFKLFDL-I-----HVLT---------TDHATVTRIT 78 (363)
Q Consensus 19 si~~~~l~~la~~~~~~~~~~~~-----~~~~~~~~~~~~l~~f~~~f~~-~-----~~~~---------~~~e~~~~~~ 78 (363)
.++.+..+.++..+.+.|+.... ++...+....++-.+.++.+.. + ..++ .+++ .+.
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypd---dvv 93 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYAD---DVV 93 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCch---hhH
Confidence 58888899998877666664211 1111111111222333443321 1 0111 1232 456
Q ss_pred HHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc
Q 017943 79 QEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI 158 (363)
Q Consensus 79 ~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 158 (363)
+..++.+++.|+..+.+..+.+. .+.+..+++.++ +.|.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd-----------~~n~~~~i~~ak------------------------------~~G~ 132 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALND-----------PRNLQAAIQAAK------------------------------KHGA 132 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCc-----------HHHHHHHHHHHH------------------------------HcCC
Confidence 67888889999998877655331 123344444432 2455
Q ss_pred EEEEEEEeeCC--CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCCh--hh
Q 017943 159 YVRLLLSIDRR--ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNK--EE 233 (363)
Q Consensus 159 ~~~li~~~~r~--~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~-~gl~~~~HagE~~~~--~~ 233 (363)
.+...+|...+ .+++...+.++.+.+...+.|.=-|.+| ...|.....++...++ .++++.+|+.-+.+- .+
T Consensus 133 ~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G---~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An 209 (582)
T TIGR01108 133 HAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAG---ILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMA 209 (582)
T ss_pred EEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC---CcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHH
Confidence 55544443332 3456666666666655333222235555 2456777777777655 478899998876654 45
Q ss_pred HHHHHhcCCCeee
Q 017943 234 IQSMLDFLPQRIG 246 (363)
Q Consensus 234 i~~~l~~g~~rig 246 (363)
...|++.|++.+.
T Consensus 210 ~laAveaGa~~vd 222 (582)
T TIGR01108 210 LLKAIEAGADGID 222 (582)
T ss_pred HHHHHHhCCCEEE
Confidence 5677888988764
No 158
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=90.63 E-value=1.9 Score=38.72 Aligned_cols=132 Identities=10% Similarity=0.030 Sum_probs=85.5
Q ss_pred ceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEecc------cCHHHHHHHhcC
Q 017943 189 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACC------FEEEEWRKLKSS 262 (363)
Q Consensus 189 ~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~------~~~~~~~~l~~~ 262 (363)
+++|+-+.. ..|...+.....- .+--+.+|.|. ..-.+.+++.+++-+.|-.. ++--+.+..+++
T Consensus 59 g~~gv~i~~----~np~~l~~~V~k~--~~~vv~V~GGd---~~vNR~AvE~~VDVL~~P~~~Rkd~g~dHVLAKlAa~n 129 (216)
T PRK03892 59 GKVAILLVT----PKPSLIREVKQRF--LNYLIYVQGGD---LRVNRYAIERGVDAIISPWVGRKDPGIDHVLARMAAKR 129 (216)
T ss_pred CcceEEEec----CCHHHHHHHHHhc--cceEEEEECCc---HHHHHHHHhcccceeecccccCcCCCccHHHHHHHHHc
Confidence 355766653 2345555444433 24556677753 23335566657777666542 344577888999
Q ss_pred CCcEEEccccccccccccCCCCccHHHH-------HHcCCCEEecCCCCCccCCChHHHHHHHHHHCCCCHHHHHH
Q 017943 263 KIPVEICLTSNIRTETISSLDIHHFVDL-------YKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQ 331 (363)
Q Consensus 263 ~i~ve~cPtSN~~l~~~~~~~~~pi~~l-------~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~~~l~~~~l~~ 331 (363)
++.+++|...=+...+.. +..-+..| .+.++|+.|+|+-...++.--.+|+..+...+|++.++++.
T Consensus 130 ~VAIe~~L~plL~~~G~~--Rar~L~~~r~~l~L~rKYd~P~VISS~A~s~~~lRsPRdl~aL~~~iGme~~ea~~ 203 (216)
T PRK03892 130 GVAIGFSLSPLLRANPYE--RANILRFMMKAWQLVNKYKVPRFITSSAESKWEVRGPRDLMSLGINIGMEIPQAKA 203 (216)
T ss_pred CeEEEEecHHHHhhCchh--HHHHHHHHHHHHHHHHHcCCCEEEecCcchhccCCCHHHHHHHHHHhCCCHHHHHH
Confidence 999999987544443221 11222222 36899999999999999977778899999999999998653
No 159
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=90.60 E-value=15 Score=34.49 Aligned_cols=126 Identities=15% Similarity=0.081 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCC
Q 017943 77 ITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGK 156 (363)
Q Consensus 77 ~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (363)
+..+.++.+.+.|+..+.+.+.... ++.+.+.++.++ +.
T Consensus 92 ~~~~di~~~~~~g~~~iri~~~~~~-----------~~~~~~~i~~ak------------------------------~~ 130 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFDALND-----------VRNLEVAIKAVK------------------------------KA 130 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEeecCCh-----------HHHHHHHHHHHH------------------------------HC
Confidence 3566677777889988877443221 444555555543 24
Q ss_pred CcEEEEEEEe--eCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCCh--
Q 017943 157 KIYVRLLLSI--DRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNK-- 231 (363)
Q Consensus 157 gi~~~li~~~--~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~-~gl~~~~HagE~~~~-- 231 (363)
|+.+.+.++. .-..+++...+.++.+.+...+.|.=-|..| ...|..+..++...++ .++++.+|+..+.+-
T Consensus 131 G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~ 207 (275)
T cd07937 131 GKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAG---LLTPYAAYELVKALKKEVGLPIHLHTHDTSGLAV 207 (275)
T ss_pred CCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhCCCeEEEEecCCCChHH
Confidence 5555554433 1124566677777777766433222234444 3467888888887765 478888898766653
Q ss_pred hhHHHHHhcCCCeee
Q 017943 232 EEIQSMLDFLPQRIG 246 (363)
Q Consensus 232 ~~i~~~l~~g~~rig 246 (363)
.+...+++.|++.+.
T Consensus 208 aN~laA~~aGa~~vd 222 (275)
T cd07937 208 ATYLAAAEAGVDIVD 222 (275)
T ss_pred HHHHHHHHhCCCEEE
Confidence 355667788988753
No 160
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=90.52 E-value=11 Score=39.43 Aligned_cols=127 Identities=17% Similarity=0.082 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 017943 76 RITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (363)
Q Consensus 76 ~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (363)
.+.+..++.+++.|+..+.+..+.+. ++.+..+++.++ +
T Consensus 96 ~vv~~~v~~A~~~Gvd~irif~~lnd-----------~~n~~~~i~~ak------------------------------~ 134 (592)
T PRK09282 96 DVVEKFVEKAAENGIDIFRIFDALND-----------VRNMEVAIKAAK------------------------------K 134 (592)
T ss_pred hhhHHHHHHHHHCCCCEEEEEEecCh-----------HHHHHHHHHHHH------------------------------H
Confidence 35667788888999998877665331 233444444433 2
Q ss_pred CCcEEEEEEEeeCC--CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCCh-
Q 017943 156 KKIYVRLLLSIDRR--ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNK- 231 (363)
Q Consensus 156 ~gi~~~li~~~~r~--~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~-~gl~~~~HagE~~~~- 231 (363)
.|..+...+|.... .+++...+.++.+.+...+.|.=-|..| ...|.....++...++ .++++.+|+.-+.+-
T Consensus 135 ~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G---~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla 211 (592)
T PRK09282 135 AGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAG---LLTPYAAYELVKALKEEVDLPVQLHSHCTSGLA 211 (592)
T ss_pred cCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCC---CcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcH
Confidence 34555544444332 2345555666665554333222234455 3457777777777665 478888998766653
Q ss_pred -hhHHHHHhcCCCeee
Q 017943 232 -EEIQSMLDFLPQRIG 246 (363)
Q Consensus 232 -~~i~~~l~~g~~rig 246 (363)
.+...|++.|++.+.
T Consensus 212 ~An~laAv~aGad~vD 227 (592)
T PRK09282 212 PMTYLKAVEAGVDIID 227 (592)
T ss_pred HHHHHHHHHhCCCEEE
Confidence 456678888988764
No 161
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=90.33 E-value=18 Score=37.05 Aligned_cols=201 Identities=12% Similarity=0.123 Sum_probs=106.4
Q ss_pred CCCCHHHHHHHHHHhccCCCCCc-----cchHHHHhhcCCCHHHHHHhhhHH------Hhhc--------CCHHHHHHHH
Q 017943 18 GSIRDSTLLELARVLGEKGVIVF-----SDVEHVIMKSDRSLHEVFKLFDLI------HVLT--------TDHATVTRIT 78 (363)
Q Consensus 18 Gsi~~~~l~~la~~~~~~~~~~~-----~~~~~~~~~~~~~l~~f~~~f~~~------~~~~--------~~~e~~~~~~ 78 (363)
=.++.+.++.+|..+.+-|+... .++...+....++-.+.++.+... ..++ ...+| .+.
T Consensus 22 tr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~d--dvv 99 (499)
T PRK12330 22 TRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYED--EVV 99 (499)
T ss_pred ccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcch--hHH
Confidence 35778888888887766665321 122221111223333444444321 1111 12222 467
Q ss_pred HHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc
Q 017943 79 QEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI 158 (363)
Q Consensus 79 ~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 158 (363)
...++.+++.|+-.+.+....+ --..++..++.+++ .|.
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~ln--------dv~nl~~ai~~vk~---------------------------------ag~ 138 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALN--------DPRNLEHAMKAVKK---------------------------------VGK 138 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecCC--------hHHHHHHHHHHHHH---------------------------------hCC
Confidence 7788889999999987755422 11223333333332 233
Q ss_pred EE--EEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc---CCceeeecCCCCCh--
Q 017943 159 YV--RLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ---GLQITLHCGEIPNK-- 231 (363)
Q Consensus 159 ~~--~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~---gl~~~~HagE~~~~-- 231 (363)
.+ .+.++++-...++...+.++.+.+...+.|.=-|.+| ...|.....++...++. ++++.+|+.-+.+-
T Consensus 139 ~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaG---ll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~ 215 (499)
T PRK12330 139 HAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMAA---LLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTL 215 (499)
T ss_pred eEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcc---CCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHH
Confidence 33 3333333334455555555555554322222224444 34577777777777664 69999999876654
Q ss_pred hhHHHHHhcCCCeeeEecc---------cCHHHHHHHhcCCC
Q 017943 232 EEIQSMLDFLPQRIGHACC---------FEEEEWRKLKSSKI 264 (363)
Q Consensus 232 ~~i~~~l~~g~~rigHg~~---------~~~~~~~~l~~~~i 264 (363)
.+...|++.|++++.=.+. ..++++..|...|.
T Consensus 216 An~laAieAGad~vDtai~Glg~~aGn~atE~vv~~L~~~g~ 257 (499)
T PRK12330 216 VSLMKAIEAGVDVVDTAISSMSLGPGHNPTESLVEMLEGTGY 257 (499)
T ss_pred HHHHHHHHcCCCEEEeecccccccccchhHHHHHHHHHhcCC
Confidence 4566788899988643321 12455666665543
No 162
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.30 E-value=11 Score=33.85 Aligned_cols=93 Identities=13% Similarity=0.009 Sum_probs=59.1
Q ss_pred CCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCee--eEeccc-CHHHHHHHhcCCCcEEEccccc
Q 017943 197 GNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI--GHACCF-EEEEWRKLKSSKIPVEICLTSN 273 (363)
Q Consensus 197 g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~ri--gHg~~~-~~~~~~~l~~~~i~ve~cPtSN 273 (363)
|.....+|..-.++.+.|+++|+++..=+ ..+.++..++++|++.+ =.+-.+ -+.-++.++.-=-.+.+|||.
T Consensus 76 GA~FivSP~~~~~vi~~a~~~~i~~iPG~---~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yikal~~plp~~~l~ptG- 151 (201)
T PRK06015 76 GSRFIVSPGTTQELLAAANDSDVPLLPGA---ATPSEVMALREEGYTVLKFFPAEQAGGAAFLKALSSPLAGTFFCPTG- 151 (201)
T ss_pred CCCEEECCCCCHHHHHHHHHcCCCEeCCC---CCHHHHHHHHHCCCCEEEECCchhhCCHHHHHHHHhhCCCCcEEecC-
Confidence 34444455566678889999999987644 35778889999998653 333333 245555554322234456753
Q ss_pred cccccccCCCCccHHHHHHcCCCEEec
Q 017943 274 IRTETISSLDIHHFVDLYKAQHPLVLC 300 (363)
Q Consensus 274 ~~l~~~~~~~~~pi~~l~~~Gv~v~l~ 300 (363)
++ ....+.+|+++|.-++.+
T Consensus 152 ----GV---~~~n~~~~l~ag~~~~~g 171 (201)
T PRK06015 152 ----GI---SLKNARDYLSLPNVVCVG 171 (201)
T ss_pred ----CC---CHHHHHHHHhCCCeEEEE
Confidence 32 335789999997666666
No 163
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=90.19 E-value=17 Score=34.46 Aligned_cols=187 Identities=10% Similarity=0.040 Sum_probs=113.8
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHH-HHHHcC--CceeeecCCCCChhhHHHHHhcCCCee-
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQG--LQITLHCGEIPNKEEIQSMLDFLPQRI- 245 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~-~A~~~g--l~~~~HagE~~~~~~i~~~l~~g~~ri- 245 (363)
.+.+.++..++-|.+.+.+.|+.+.-..-.+..+.+.+..+.. .|++.. +|+.+|..-..+.+.+..+++.|-+.+
T Consensus 26 ~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVM 105 (285)
T PRK07709 26 NNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVM 105 (285)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 3568888899999888877677664332222123445555554 355665 899999988777788888999886653
Q ss_pred eEeccc--------CHHHHHHHhcCCCcEEEccccccccccccC-------CCCcc--HHHHHH-cCC---CEEecCCCC
Q 017943 246 GHACCF--------EEEEWRKLKSSKIPVEICLTSNIRTETISS-------LDIHH--FVDLYK-AQH---PLVLCTDDS 304 (363)
Q Consensus 246 gHg~~~--------~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~-------~~~~p--i~~l~~-~Gv---~v~l~TDd~ 304 (363)
-=|..+ +.+..++....|+.||.-.-. +++..+ +-+.| ..+|.+ -|+ -|+|||=-.
T Consensus 106 ~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~---igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG 182 (285)
T PRK07709 106 IDASHHPFEENVETTKKVVEYAHARNVSVEAELGT---VGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHG 182 (285)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEec---cCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeeccccc
Confidence 112222 235677778889999753321 111111 11344 455554 465 356666422
Q ss_pred Cc-----cCCChHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 017943 305 GV-----FSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 359 (363)
Q Consensus 305 ~~-----~~~~l~~E~~~~~~~-------~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~ 359 (363)
.+ .+.++..+++..... -|++.++++++..+++.-.=+.-+.|....+.+.+..+
T Consensus 183 ~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 249 (285)
T PRK07709 183 PYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLN 249 (285)
T ss_pred CcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHHH
Confidence 22 223445555444321 36788888888888888877777777777777766554
No 164
>PRK08044 allantoinase; Provisional
Probab=90.14 E-value=1.7 Score=43.95 Aligned_cols=131 Identities=11% Similarity=0.038 Sum_probs=79.7
Q ss_pred hhhHHHHHHHHHHcCCce-eeecCCCCChhhHHHHHhcCCC----eeeEecccCHHHHHHHhcCCCcEEEcccccccccc
Q 017943 204 WTTFLPALKFAREQGLQI-TLHCGEIPNKEEIQSMLDFLPQ----RIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTET 278 (363)
Q Consensus 204 ~~~~~~~~~~A~~~gl~~-~~HagE~~~~~~i~~~l~~g~~----rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~ 278 (363)
.....+++..|++.|.++ ..|..-..+.+.+..+...|.+ .--|...++++.+.. .|...-++|..--..
T Consensus 221 ~~~v~r~~~lA~~~g~~vhi~HiSt~~~~~~i~~ak~~G~~it~e~~~h~L~l~~~~~~~---~~~~~k~~PPlr~~~-- 295 (449)
T PRK08044 221 VEAIRRVLYLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEE---IGTLAKCSPPIRDLE-- 295 (449)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCCEEEEcChhhhcccHHHhhC---CCCcEEEcCCCCChH--
Confidence 345778889999999987 3576421112233334344532 235777777776543 377777888532111
Q ss_pred ccCCCCccHHHHHHcCCCEEecCCCCCccC------------------CChHHHHHHHHHHCCCCHHHHHH-HHHHHHHH
Q 017943 279 ISSLDIHHFVDLYKAQHPLVLCTDDSGVFS------------------TSVSREYDLAASAFSLGRREMFQ-LAKSAVKF 339 (363)
Q Consensus 279 ~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~------------------~~l~~E~~~~~~~~~l~~~~l~~-l~~na~~~ 339 (363)
....+.+.+..|+..+|+||-..... +.|..-+..+....+++++++.+ ++.|+++.
T Consensus 296 ----d~~aL~~~l~~G~id~i~sDH~P~~~~~K~~~~~~~~~g~~g~e~~l~~~~~~~v~~~~l~~~~~v~~~s~npA~~ 371 (449)
T PRK08044 296 ----NQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADI 371 (449)
T ss_pred ----HHHHHHHHHhCCCceEEEcCCCCCChHHccCChhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHH
Confidence 12456677788999999999543211 12222333444556899999665 56899998
Q ss_pred cCCC
Q 017943 340 IFAN 343 (363)
Q Consensus 340 sf~~ 343 (363)
.-++
T Consensus 372 lgl~ 375 (449)
T PRK08044 372 FGLQ 375 (449)
T ss_pred hCCC
Confidence 7774
No 165
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=89.95 E-value=17 Score=34.03 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=54.4
Q ss_pred CCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C--CceeeecCCCCCh-
Q 017943 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G--LQITLHCGEIPNK- 231 (363)
Q Consensus 156 ~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~-g--l~~~~HagE~~~~- 231 (363)
.|+.+.+-+...-..+++...+.++.+.+...+.|.=.|..| ...|+.+...+...++. + +++.+|+....+-
T Consensus 121 ~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla 197 (266)
T cd07944 121 KGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFG---SMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLA 197 (266)
T ss_pred CCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCC---CCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHH
Confidence 344444443332225677777888777766433333334445 34678888888887653 4 8899998766653
Q ss_pred -hhHHHHHhcCCCee
Q 017943 232 -EEIQSMLDFLPQRI 245 (363)
Q Consensus 232 -~~i~~~l~~g~~ri 245 (363)
.+...+++.|++.+
T Consensus 198 ~AN~laA~~aGa~~v 212 (266)
T cd07944 198 LANTLEAIELGVEII 212 (266)
T ss_pred HHHHHHHHHcCCCEE
Confidence 35567788888764
No 166
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=89.67 E-value=17 Score=33.75 Aligned_cols=88 Identities=16% Similarity=0.038 Sum_probs=53.7
Q ss_pred CCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CC-ceeeecCCCCCh--
Q 017943 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GL-QITLHCGEIPNK-- 231 (363)
Q Consensus 156 ~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~-gl-~~~~HagE~~~~-- 231 (363)
.|+.+.+.++..-..+++...+.++.+.+...+.|.=-|..| ...|..+..+++..++. +. ++.+|+.-+.+-
T Consensus 124 ~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~ 200 (263)
T cd07943 124 LGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDSAG---AMLPDDVRERVRALREALDPTPVGFHGHNNLGLAV 200 (263)
T ss_pred CCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCC---CcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHH
Confidence 355555444322335677777777777665433222224444 34678888888887664 54 888888755543
Q ss_pred hhHHHHHhcCCCeee
Q 017943 232 EEIQSMLDFLPQRIG 246 (363)
Q Consensus 232 ~~i~~~l~~g~~rig 246 (363)
.+...+++.|++++.
T Consensus 201 AN~laAi~aGa~~vd 215 (263)
T cd07943 201 ANSLAAVEAGATRID 215 (263)
T ss_pred HHHHHHHHhCCCEEE
Confidence 355677888988763
No 167
>PRK09389 (R)-citramalate synthase; Provisional
Probab=89.33 E-value=18 Score=37.02 Aligned_cols=131 Identities=12% Similarity=0.072 Sum_probs=80.6
Q ss_pred HHHHHhcCCeEEEEeeCCCc-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc
Q 017943 82 VEDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI 158 (363)
Q Consensus 82 ~~~~~~~gV~y~E~r~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 158 (363)
++.+.+.|+..+-+.++... + ..-+.+.++.++.+.+.++.+++ .|+
T Consensus 79 i~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~------------------------------~g~ 128 (488)
T PRK09389 79 IDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKD------------------------------HGL 128 (488)
T ss_pred HHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------CCC
Confidence 45556677776666554332 1 23467889999998888876643 344
Q ss_pred EEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCCh--hhHH
Q 017943 159 YVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNK--EEIQ 235 (363)
Q Consensus 159 ~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~-~gl~~~~HagE~~~~--~~i~ 235 (363)
.+.+-..-.-..+++-..+.++.+.+...+.|.=-|..| ...|..+..+++..++ .++++.+|+.-..+- .+..
T Consensus 129 ~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG---~~~P~~~~~lv~~l~~~~~v~l~~H~HND~GlAvANal 205 (488)
T PRK09389 129 IVELSGEDASRADLDFLKELYKAGIEAGADRICFCDTVG---ILTPEKTYELFKRLSELVKGPVSIHCHNDFGLAVANTL 205 (488)
T ss_pred EEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCC---CcCHHHHHHHHHHHHhhcCCeEEEEecCCccHHHHHHH
Confidence 444443322223567777788777765443333334444 2456777777777654 478888888755543 3456
Q ss_pred HHHhcCCCee
Q 017943 236 SMLDFLPQRI 245 (363)
Q Consensus 236 ~~l~~g~~ri 245 (363)
.+++.|++++
T Consensus 206 aAv~aGa~~V 215 (488)
T PRK09389 206 AALAAGADQV 215 (488)
T ss_pred HHHHcCCCEE
Confidence 6778898885
No 168
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=88.50 E-value=13 Score=35.68 Aligned_cols=125 Identities=14% Similarity=0.135 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHcCCcee-eecCCCCChhhHHHHHhc--CCCeeeEec---------ccCHHHHHHHhcCCCcEEEcccc
Q 017943 205 TTFLPALKFAREQGLQIT-LHCGEIPNKEEIQSMLDF--LPQRIGHAC---------CFEEEEWRKLKSSKIPVEICLTS 272 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~-~HagE~~~~~~i~~~l~~--g~~rigHg~---------~~~~~~~~~l~~~~i~ve~cPtS 272 (363)
+.-+++++...+.|+-+. .|+++ ...+++++. .|--+.|.. .++++.++.++++|-.|.+|..+
T Consensus 154 ~~G~~vv~~mn~lGmiiDvSH~s~----~~~~dv~~~s~~PviaSHsn~ral~~h~RNltD~~i~~ia~~GGvigi~~~~ 229 (309)
T cd01301 154 PFGKELVREMNRLGIIIDLSHLSE----RTFWDVLDISNAPVIASHSNARALCDHPRNLTDAQLKAIAETGGVIGVNFYP 229 (309)
T ss_pred HHHHHHHHHHHHcCCEEEcCCCCH----HHHHHHHHhcCCCEEEeccChHHhcCCCCCCCHHHHHHHHHcCCEEEEeeeH
Confidence 345678888888897775 47753 456777764 355556653 36789999999999888877765
Q ss_pred cccccc-ccCCC--CccHHHHHH-cCCC-EEecCCCCCccCC----ChHHHHH---HHHHHCCCCHHHHHHHH
Q 017943 273 NIRTET-ISSLD--IHHFVDLYK-AQHP-LVLCTDDSGVFST----SVSREYD---LAASAFSLGRREMFQLA 333 (363)
Q Consensus 273 N~~l~~-~~~~~--~~pi~~l~~-~Gv~-v~l~TDd~~~~~~----~l~~E~~---~~~~~~~l~~~~l~~l~ 333 (363)
...... -.++. ..++..+.+ .|+. |+||||-.+..+. .=...|. .....-|++.+++.+++
T Consensus 230 ~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGsDfdg~~~~~~gl~~~~~~~~l~~~L~~rG~s~~~i~~i~ 302 (309)
T cd01301 230 AFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGSDFDGIGGTPGGLEDVSDLPNLTAELLERGYSEEEIEKIA 302 (309)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCccccCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 433210 00000 012222222 4664 9999995443321 1122332 22334699999998876
No 169
>PRK09248 putative hydrolase; Validated
Probab=88.35 E-value=2.2 Score=39.35 Aligned_cols=74 Identities=15% Similarity=-0.076 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCCcEEEccccccccccccCC-CCccHHHHHHcCCCEEecCCC--CCccCCChHHHHHHHHHHCCCCHHH
Q 017943 253 EEEWRKLKSSKIPVEICLTSNIRTETISSL-DIHHFVDLYKAQHPLVLCTDD--SGVFSTSVSREYDLAASAFSLGRRE 328 (363)
Q Consensus 253 ~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~-~~~pi~~l~~~Gv~v~l~TDd--~~~~~~~l~~E~~~~~~~~~l~~~~ 328 (363)
++.++.++++|+.+|++-.+......-... ...-+..+.+.|+++++|||. |.-.+ . ..+...+++.+|++...
T Consensus 143 ~~~~~~~~~~g~~lEvN~~~l~~~~~g~~~~~~~~~~~~~~~g~~~~~gSDAH~~~~vg-~-~~~~~~~~~~~g~~~~~ 219 (246)
T PRK09248 143 EAVVKAAKEHNVALEINNSSFGHSRKGSEDNCRAIAALCKKAGVWVALGSDAHIAFDIG-N-FEEALKILDEVGFPEER 219 (246)
T ss_pred HHHHHHHHHhCCEEEEECCCCccCCCCCcChHHHHHHHHHHcCCeEEEeCCCCChhhhc-c-HHHHHHHHHHcCCCHHH
Confidence 567899999999999987664211100000 112246677899999999994 44343 3 56777777888988774
No 170
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=88.09 E-value=29 Score=34.30 Aligned_cols=155 Identities=10% Similarity=0.068 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCC------hhhHHHHHh---cCCCee
Q 017943 175 AMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPN------KEEIQSMLD---FLPQRI 245 (363)
Q Consensus 175 ~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~------~~~i~~~l~---~g~~ri 245 (363)
+.+.++.+.+. ..++.++-. ..+.++.. .|-+.|....+|..=.-. |.-+..++. +.+.-|
T Consensus 179 ~~~~i~~l~~~--gi~vs~GHs----~A~~~~~~----~a~~~Ga~~~THlfNaM~~~~hR~pg~vga~l~~~~~~~elI 248 (380)
T TIGR00221 179 HFELIRHLKDA--GIIVSAGHT----NATYELAK----AAFKAGATHATHLYNAMSPIHHREPGVIGAVLDHDDVYTEII 248 (380)
T ss_pred hHHHHHHHHHC--CeEEEeeCC----CCCHHHHH----HHHHcCCCeeeeeccCCCCcCCCCCcHHHHHhcCCCcEEEEE
Confidence 45666665543 123444422 12334433 344669999999842221 223455553 234567
Q ss_pred eEecccCHHHHHHHhcCCCcEEEccccc-cccccccCCCCccH---HHHHHcCCCEEecCCCCCccC--CChHHHHHHHH
Q 017943 246 GHACCFEEEEWRKLKSSKIPVEICLTSN-IRTETISSLDIHHF---VDLYKAQHPLVLCTDDSGVFS--TSVSREYDLAA 319 (363)
Q Consensus 246 gHg~~~~~~~~~~l~~~~i~ve~cPtSN-~~l~~~~~~~~~pi---~~l~~~Gv~v~l~TDd~~~~~--~~l~~E~~~~~ 319 (363)
.=|++++|+.++++.+..-+==+|..|- +...+.++ +..++ .-..+.| .+.+ .|+ .+.+ .+|.++++.+.
T Consensus 249 ~Dg~Hv~p~~~~~~~r~kg~~~~~lvtDa~~~~g~~~-G~y~l~~~~v~~~~g-~~~~-~~g-~LAGs~ltl~~~v~~l~ 324 (380)
T TIGR00221 249 ADGIHIHPLNIRLAKKLKGDSKLCLVTDSMAAAGAKD-GVFIFGGKTVYIREG-TCLD-SNG-TLAGSSLTMIEGARNLV 324 (380)
T ss_pred cCCCcCCHHHHHHHHHhcCCCcEEEEeccccccCCCC-ceEeECCEEEEEECC-EEEc-CCC-ceechhhhHHHHHHHHH
Confidence 7799999998887744331100122222 11111111 11111 0011222 1222 333 3444 79999999998
Q ss_pred HHCCCCHHHHHH-HHHHHHHHcCCC
Q 017943 320 SAFSLGRREMFQ-LAKSAVKFIFAN 343 (363)
Q Consensus 320 ~~~~l~~~~l~~-l~~na~~~sf~~ 343 (363)
+..+++++++.+ ++.|+.+...++
T Consensus 325 ~~~~~~~~eal~~aT~npA~~lgl~ 349 (380)
T TIGR00221 325 EFTNISLTDAARMSSLNPARALGID 349 (380)
T ss_pred HhhCCCHHHHHHHHhHHHHHHhCCC
Confidence 888899999665 567999988765
No 171
>PRK07945 hypothetical protein; Provisional
Probab=87.95 E-value=1.2 Score=43.20 Aligned_cols=73 Identities=12% Similarity=-0.003 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccC-CChHHHHHHHHHHCCCCHHHHHH
Q 017943 253 EEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASAFSLGRREMFQ 331 (363)
Q Consensus 253 ~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~-~~l~~E~~~~~~~~~l~~~~l~~ 331 (363)
++.++.++++|+.+|+|-... ... ....-++.+.+.|+|++||||.=.... ..+.. -...++..|++++++..
T Consensus 248 ~~i~~a~~e~g~~lEINt~~~-r~~----P~~~il~~a~e~G~~vtigSDAH~p~~v~~~~~-~~~~a~~~g~~~~~i~n 321 (335)
T PRK07945 248 EAVFAACREHGTAVEINSRPE-RRD----PPTRLLRLALDAGCLFSIDTDAHAPGQLDWLGY-GCERAEEAGVPADRIVN 321 (335)
T ss_pred HHHHHHHHHhCCEEEEeCCCC-CCC----ChHHHHHHHHHcCCeEEecCCCCChhhcchHHH-HHHHHHHcCCCHHHccc
Confidence 467899999999999985321 110 111225777889999999999644344 33344 44445668998887653
No 172
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=87.37 E-value=21 Score=31.99 Aligned_cols=166 Identities=16% Similarity=0.194 Sum_probs=78.2
Q ss_pred HHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEE
Q 017943 82 VEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVR 161 (363)
Q Consensus 82 ~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~ 161 (363)
+..+.+.|..-+|+--+.. ..|+|+. +..+....+. .++.++
T Consensus 13 a~~A~~~GAdRiELc~~l~---~GGlTPS--~g~i~~~~~~---------------------------------~~ipv~ 54 (201)
T PF03932_consen 13 ALAAEAGGADRIELCSNLE---VGGLTPS--LGLIRQAREA---------------------------------VDIPVH 54 (201)
T ss_dssp HHHHHHTT-SEEEEEBTGG---GT-B-----HHHHHHHHHH---------------------------------TTSEEE
T ss_pred HHHHHHcCCCEEEECCCcc---CCCcCcC--HHHHHHHHhh---------------------------------cCCceE
Confidence 4456789999999977643 4678874 2222222221 123332
Q ss_pred EEEEeeCC----CCHHHHHHHHHHHHhhCCCceEEEecCC--CCCCCChhhHHHHHHHHHHcCCceeeecC--CCCChh-
Q 017943 162 LLLSIDRR----ETTEAAMETVKLALEMRDLGVVGIDLSG--NPTKGEWTTFLPALKFAREQGLQITLHCG--EIPNKE- 232 (363)
Q Consensus 162 li~~~~r~----~~~e~~~~~~~~a~~~~~~~vvGidl~g--~e~~~~~~~~~~~~~~A~~~gl~~~~Hag--E~~~~~- 232 (363)
..+- .|. .+.++...+.+....++.-+..||-+.- .....+.+..+.+.+.|+ |+++|+|-+ +..++.
T Consensus 55 vMIR-pr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~~tFHRAfD~~~d~~~ 131 (201)
T PF03932_consen 55 VMIR-PRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAG--GMPVTFHRAFDEVPDPEE 131 (201)
T ss_dssp EE---SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT--TSEEEE-GGGGGSSTHHH
T ss_pred EEEC-CCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC--CCeEEEeCcHHHhCCHHH
Confidence 2221 222 2345555555444444333444543321 122235566777777776 999999975 344443
Q ss_pred hHHHHHhcCCCee-eEeccc---C--HHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHH-cCCC
Q 017943 233 EIQSMLDFLPQRI-GHACCF---E--EEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYK-AQHP 296 (363)
Q Consensus 233 ~i~~~l~~g~~ri-gHg~~~---~--~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~-~Gv~ 296 (363)
.+.+.+++|.+|| -||-.. + +.+-+++...+-.+++.|-+-+ ....++.+.+ .|+.
T Consensus 132 al~~L~~lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~~~i~Im~GgGv--------~~~nv~~l~~~tg~~ 194 (201)
T PF03932_consen 132 ALEQLIELGFDRVLTSGGAPTALEGIENLKELVEQAKGRIEIMPGGGV--------RAENVPELVEETGVR 194 (201)
T ss_dssp HHHHHHHHT-SEEEESTTSSSTTTCHHHHHHHHHHHTTSSEEEEESS----------TTTHHHHHHHHT-S
T ss_pred HHHHHHhcCCCEEECCCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCC--------CHHHHHHHHHhhCCe
Confidence 3455667899996 444322 1 2333333444445666665422 3456777766 6654
No 173
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=87.17 E-value=27 Score=33.04 Aligned_cols=186 Identities=9% Similarity=0.035 Sum_probs=107.2
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHH-HHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeE-
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH- 247 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~-~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigH- 247 (363)
.+.+.+...++.|.+.+.+.|+.+.-..-.. .+.+.+.. +...|++.++|+.+|..-..+.+.+..+++.|.+.+--
T Consensus 26 ~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~-~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~D 104 (283)
T PRK07998 26 TNLETTISILNAIERSGLPNFIQIAPTNAQL-SGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTSVMID 104 (283)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECcHhHHhh-CCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCEEEEe
Confidence 3567888888888888777666543221111 23344443 45568889999999998777777888889888766421
Q ss_pred ecccC--------HHHHHHHhcCCCcEEEcccccccccccc-------CCCCcc--HHHHHH-cCC---CEEecCCCCCc
Q 017943 248 ACCFE--------EEEWRKLKSSKIPVEICLTSNIRTETIS-------SLDIHH--FVDLYK-AQH---PLVLCTDDSGV 306 (363)
Q Consensus 248 g~~~~--------~~~~~~l~~~~i~ve~cPtSN~~l~~~~-------~~~~~p--i~~l~~-~Gv---~v~l~TDd~~~ 306 (363)
|..++ .+..++....|+++|.-+.. +++.. .....| ..++.+ -|+ -|++||=-..+
T Consensus 105 gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~---vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y 181 (283)
T PRK07998 105 GAALPFEENIAFTKEAVDFAKSYGVPVEAELGA---ILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLE 181 (283)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecc---CCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCC
Confidence 22222 35677788889998654432 11111 011233 344543 454 34555532111
Q ss_pred ----cCCChHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 017943 307 ----FSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 359 (363)
Q Consensus 307 ----~~~~l~~E~~~~~~~-------~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~ 359 (363)
.+.++..+++..... -|++.++++++..+++.-.=+.-+.|....+.+.++.+
T Consensus 182 ~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~a~~~~~~~~l~ 245 (283)
T PRK07998 182 DIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLRKAFITTVGKAYV 245 (283)
T ss_pred CCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHHHHH
Confidence 112444454444321 25666777777777777666666666666666655543
No 174
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=86.99 E-value=12 Score=35.62 Aligned_cols=112 Identities=18% Similarity=0.121 Sum_probs=65.1
Q ss_pred ceEEEecCCCCCCCCh---hhHHHHHHHHHHcCCceeeecCCCC-ChhhHHHHH-hcCCC----eeeEecc-cCH-HHHH
Q 017943 189 GVVGIDLSGNPTKGEW---TTFLPALKFAREQGLQITLHCGEIP-NKEEIQSML-DFLPQ----RIGHACC-FEE-EEWR 257 (363)
Q Consensus 189 ~vvGidl~g~e~~~~~---~~~~~~~~~A~~~gl~~~~HagE~~-~~~~i~~~l-~~g~~----rigHg~~-~~~-~~~~ 257 (363)
|++|.. |.....+| ..|+.+....++.|+|+++|.-... +.+ ..+.+ +.|++ .|||+-- -+| .-.+
T Consensus 135 GiIk~~--~~~~~iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~~gt~g~e-q~~il~~egvdl~~v~igH~d~n~dd~~y~~ 211 (316)
T COG1735 135 GIIKEA--GGSPAITPLEEKSLRAAARAHKETGAPISTHTPAGTMGLE-QLRILAEEGVDLRKVSIGHMDPNTDDVYYQK 211 (316)
T ss_pred ceeeec--cCcccCCHHHHHHHHHHHHHhhhcCCCeEEeccchhhhHH-HHHHHHHcCCChhHeeEeccCCCCChHHHHH
Confidence 344433 33333444 3466666666778999999974433 222 22333 35643 4899873 343 3567
Q ss_pred HHhcCCCcEEEccccccccccccCCCCccHHHHHHcCC--CEEecCCCC
Q 017943 258 KLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQH--PLVLCTDDS 304 (363)
Q Consensus 258 ~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv--~v~l~TDd~ 304 (363)
.|+.+|..++.--..-......+ -+.+|+.++.+.|+ .+.+|-|+.
T Consensus 212 ~l~~~Ga~l~fD~iG~d~y~pd~-~r~~~~~~l~~~gy~d~i~ls~d~~ 259 (316)
T COG1735 212 KLADRGAFLEFDRIGKDKYYPDE-DRIAPLLELVARGYADLILLSHDDI 259 (316)
T ss_pred HHHhcCceEEecccCccccCcHH-HhhhhHHHHHHhhHhhheecccchh
Confidence 88889998876544211111111 13588999999998 477773443
No 175
>PRK02382 dihydroorotase; Provisional
Probab=86.04 E-value=5.7 Score=39.95 Aligned_cols=139 Identities=13% Similarity=0.022 Sum_probs=78.0
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCC---------------------Chh-----hHHHHHh----cCCCeeeEeccc-
Q 017943 203 EWTTFLPALKFAREQGLQITLHCGEIP---------------------NKE-----EIQSMLD----FLPQRIGHACCF- 251 (363)
Q Consensus 203 ~~~~~~~~~~~A~~~gl~~~~HagE~~---------------------~~~-----~i~~~l~----~g~~rigHg~~~- 251 (363)
+...+.++++.+++.|+++.+|+.... .|. .+..++. .|+ --|-.++
T Consensus 159 ~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~g~--~~hi~h~s 236 (443)
T PRK02382 159 DEELFEEALAEAARLGVLATVHAEDEDLFDELAKLLKGDADADAWSAYRPAAAEAAAVERALEVASETGA--RIHIAHIS 236 (443)
T ss_pred CHHHHHHHHHHHHhcCCeEEEecCCHHHHHHhhHhhcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHhCC--CEEEEECC
Confidence 446677888888888888888874321 000 0112222 132 1355444
Q ss_pred CHHHHHHHhcCCCcEEEcccccccccc----ccC-C-CCccHHHH---------HHcCCCEEecCCCCCcc---------
Q 017943 252 EEEEWRKLKSSKIPVEICLTSNIRTET----ISS-L-DIHHFVDL---------YKAQHPLVLCTDDSGVF--------- 307 (363)
Q Consensus 252 ~~~~~~~l~~~~i~ve~cPtSN~~l~~----~~~-~-~~~pi~~l---------~~~Gv~v~l~TDd~~~~--------- 307 (363)
+.+.++.+++.++..++||-.-..... ... + -.+|++.. ++.|+.-+|+||-....
T Consensus 237 s~~~~~~i~~~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~g~i~~i~sDh~P~~~~~K~~~~~ 316 (443)
T PRK02382 237 TPEGVDAARREGITCEVTPHHLFLSRRDWERLGTFGKMNPPLRSEKRREALWERLNDGTIDVVASDHAPHTREEKDADIW 316 (443)
T ss_pred CHHHHHHHHHCCcEEEEchhhhhcCHHHHhccCceEEEcCCCCChHHHHHHHHHHhCCCCCEEEcCCCCCCHHHhcCChh
Confidence 456777777777999999983221110 000 0 12454432 56699999999953321
Q ss_pred ----C-CCh---HHHHHHHHHHCCCCHHHHH-HHHHHHHHHcCCC
Q 017943 308 ----S-TSV---SREYDLAASAFSLGRREMF-QLAKSAVKFIFAN 343 (363)
Q Consensus 308 ----~-~~l---~~E~~~~~~~~~l~~~~l~-~l~~na~~~sf~~ 343 (363)
| ..+ .-=+..++...+++++++. .++.|+++...++
T Consensus 317 ~~~~G~~g~e~~~~~~~~~~~~~~~~l~~~~~~~t~~pA~~~g~~ 361 (443)
T PRK02382 317 DAPSGVPGVETMLPLLLAAVRKNRLPLERVRDVTAANPARIFGLD 361 (443)
T ss_pred hCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHcCCC
Confidence 1 111 1112223344689999955 5568899888774
No 176
>PLN02795 allantoinase
Probab=85.88 E-value=19 Score=36.99 Aligned_cols=26 Identities=19% Similarity=0.149 Sum_probs=22.7
Q ss_pred CChhhHHHHHHHHHHcCCceeeecCC
Q 017943 202 GEWTTFLPALKFAREQGLQITLHCGE 227 (363)
Q Consensus 202 ~~~~~~~~~~~~A~~~gl~~~~HagE 227 (363)
.+.+.+.++++.|+++|+++.+|+-.
T Consensus 209 ~~~~~l~~~~~~a~~~g~~v~iH~E~ 234 (505)
T PLN02795 209 TTATHIKAALPVLAKYGRPLLVHAEV 234 (505)
T ss_pred CCHHHHHHHHHHHHHhCCEEEEecCC
Confidence 45678999999999999999999854
No 177
>PRK15108 biotin synthase; Provisional
Probab=85.67 E-value=8.3 Score=37.55 Aligned_cols=95 Identities=14% Similarity=0.174 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCC-CCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEe
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSG-NPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 248 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g-~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg 248 (363)
.+++++.+.+..+.+..-..+ .+..+| .+...+.+.+.++++.+++.++.+.++.|... .+.+....+.|.+|+.|.
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~ls-~e~l~~LkeAGld~~n~~ 153 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRF-CMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGTLS-ESQAQRLANAGLDYYNHN 153 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-EEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCcCC-HHHHHHHHHcCCCEEeec
Confidence 466776666665554422223 223333 23333457788889989988998888888654 455555556899999886
Q ss_pred cccCH----------------HHHHHHhcCCCcE
Q 017943 249 CCFEE----------------EEWRKLKSSKIPV 266 (363)
Q Consensus 249 ~~~~~----------------~~~~~l~~~~i~v 266 (363)
...+| +.++.+.+.|+.+
T Consensus 154 leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 154 LDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKV 187 (345)
T ss_pred cccChHhcCCCCCCCCHHHHHHHHHHHHHcCCce
Confidence 54332 3567777778744
No 178
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=85.60 E-value=28 Score=33.59 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCC-C-hhhHH-HHHHHHHHc--CCceeeecCCCCChhhHHHHHhcCCCe
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKG-E-WTTFL-PALKFAREQ--GLQITLHCGEIPNKEEIQSMLDFLPQR 244 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~-~-~~~~~-~~~~~A~~~--gl~~~~HagE~~~~~~i~~~l~~g~~r 244 (363)
.+.+.+...++.|.+.+.+.|+.+.-....+.. . ...+. .+...|++. .+|+.+|..-..+.+.+..+++.|-+.
T Consensus 32 ~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~GftS 111 (321)
T PRK07084 32 NNMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCIDSGFSS 111 (321)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCE
Confidence 356888889998988887766665432111111 1 12232 335567777 699999998776666677777766544
No 179
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=85.29 E-value=53 Score=34.56 Aligned_cols=181 Identities=12% Similarity=0.097 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHHhccCCCCCcc-----chHHHHhhcCCCHHHHHHhhhHH-H-----hhc---------CCHHHHHHHH
Q 017943 19 SIRDSTLLELARVLGEKGVIVFS-----DVEHVIMKSDRSLHEVFKLFDLI-H-----VLT---------TDHATVTRIT 78 (363)
Q Consensus 19 si~~~~l~~la~~~~~~~~~~~~-----~~~~~~~~~~~~l~~f~~~f~~~-~-----~~~---------~~~e~~~~~~ 78 (363)
.++.+.++.+|..+.+.|+.... ++...+....++-.+.++.+... . .++ .+++ .+.
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypd---dvv 99 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYAD---DVV 99 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcH---HHH
Confidence 68888889998876666664211 12211111223334444444321 0 001 1222 366
Q ss_pred HHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc
Q 017943 79 QEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI 158 (363)
Q Consensus 79 ~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 158 (363)
...++.+++.|+..+.+....+. ++.+..+++.+++ .|.
T Consensus 100 ~~~v~~a~~~Gid~~rifd~lnd-----------~~~~~~ai~~ak~------------------------------~G~ 138 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFDAMND-----------PRNLETALKAVRK------------------------------VGA 138 (593)
T ss_pred HHHHHHHHhcCCCEEEEeeeCCc-----------HHHHHHHHHHHHH------------------------------cCC
Confidence 77888899999999877543221 2344445554432 344
Q ss_pred EEE--EEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCCCCh--hh
Q 017943 159 YVR--LLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEIPNK--EE 233 (363)
Q Consensus 159 ~~~--li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~-~gl~~~~HagE~~~~--~~ 233 (363)
.+. +.++..-....+.-.+.++.+.+...+.|.=-|.+|- ..|.....++...++ .++++.+|+.-+.+- .+
T Consensus 139 ~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~---l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An 215 (593)
T PRK14040 139 HAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGL---LKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTAT 215 (593)
T ss_pred eEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECCCCCC---cCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHH
Confidence 433 3332222223344445555555443222222355552 456777777776654 478999998766653 35
Q ss_pred HHHHHhcCCCeee
Q 017943 234 IQSMLDFLPQRIG 246 (363)
Q Consensus 234 i~~~l~~g~~rig 246 (363)
...|++.|++.+.
T Consensus 216 ~laAieAGa~~vD 228 (593)
T PRK14040 216 LLKAIEAGIDGVD 228 (593)
T ss_pred HHHHHHcCCCEEE
Confidence 5677888988764
No 180
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=85.21 E-value=6.8 Score=37.07 Aligned_cols=185 Identities=10% Similarity=0.004 Sum_probs=114.1
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHH-HHHHHcCCceeeecCCCCChhhHHHHHhcCCCeee-Ee
Q 017943 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPAL-KFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG-HA 248 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~-~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rig-Hg 248 (363)
+.+.++..++-|.+.+.+.|+.+.-..-.+ .+.+.+..+. ..|++.++|+.+|..-..+.+.+..+++.|-+.+= =|
T Consensus 25 n~e~~~avi~AAee~~sPvIlq~s~~~~~~-~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~Dg 103 (282)
T TIGR01858 25 NLETIQAVVETAAEMRSPVILAGTPGTFKH-AGTEYIVALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGVRSAMIDG 103 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCccHHhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEeecC
Confidence 458888899999888887777664332222 2334444444 45778899999999887778888999998876541 12
Q ss_pred ccc--------CHHHHHHHhcCCCcEEEcccccccccccc---------CCCCcc--HHHHH-HcCC---CEEecCCCCC
Q 017943 249 CCF--------EEEEWRKLKSSKIPVEICLTSNIRTETIS---------SLDIHH--FVDLY-KAQH---PLVLCTDDSG 305 (363)
Q Consensus 249 ~~~--------~~~~~~~l~~~~i~ve~cPtSN~~l~~~~---------~~~~~p--i~~l~-~~Gv---~v~l~TDd~~ 305 (363)
..+ +.+..++....|+.||.-.-. +++.. .+-+.| ..++. +-|| -|++||==..
T Consensus 104 S~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~---vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~ 180 (282)
T TIGR01858 104 SHFPFAQNVKLVKEVVDFCHRQDCSVEAELGR---LGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGL 180 (282)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEe---cCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccC
Confidence 222 235678888899999753321 11100 011233 34454 3565 3566663211
Q ss_pred -----ccCCChHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 017943 306 -----VFSTSVSREYDLAASA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 359 (363)
Q Consensus 306 -----~~~~~l~~E~~~~~~~-------~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~ 359 (363)
-.+.++..+++..... -|++.++++++..+++.-.=+.-+.+....+.+.+..+
T Consensus 181 yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 246 (282)
T TIGR01858 181 YKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVATELKIAFSGAVKAYFA 246 (282)
T ss_pred cCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 2234555666554421 26777888888888888777777777776666666544
No 181
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=85.13 E-value=36 Score=35.24 Aligned_cols=132 Identities=12% Similarity=0.063 Sum_probs=80.9
Q ss_pred HHHHHHhcCCeEEEEeeCCCc-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCC
Q 017943 81 VVEDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKK 157 (363)
Q Consensus 81 ~~~~~~~~gV~y~E~r~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 157 (363)
.++.+..-|+..+-+.+.... | ..-+.+.++.++.+.++++.+++ .|
T Consensus 90 ~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~------------------------------~G 139 (524)
T PRK12344 90 NLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKA------------------------------HG 139 (524)
T ss_pred HHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH------------------------------cC
Confidence 345566677777766554332 2 23467888899988888887653 34
Q ss_pred cEEEEEEE----eeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCCh-
Q 017943 158 IYVRLLLS----IDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNK- 231 (363)
Q Consensus 158 i~~~li~~----~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~-gl~~~~HagE~~~~- 231 (363)
..+.+-.. ..| .+++-..+.++.+.+...+.+.=-|..|- ..|..+..+++..++. ++++.+|+.-..+-
T Consensus 140 ~~v~~~~e~~~Da~r-~d~~~l~~~~~~~~~~Gad~i~l~DTvG~---~~P~~v~~li~~l~~~~~v~i~~H~HND~GlA 215 (524)
T PRK12344 140 REVIFDAEHFFDGYK-ANPEYALATLKAAAEAGADWVVLCDTNGG---TLPHEVAEIVAEVRAAPGVPLGIHAHNDSGCA 215 (524)
T ss_pred CeEEEcccccccccc-CCHHHHHHHHHHHHhCCCCeEEEccCCCC---cCHHHHHHHHHHHHHhcCCeEEEEECCCCChH
Confidence 44443111 123 34566677777776654443433344542 4567777777776554 88999998766553
Q ss_pred -hhHHHHHhcCCCeee
Q 017943 232 -EEIQSMLDFLPQRIG 246 (363)
Q Consensus 232 -~~i~~~l~~g~~rig 246 (363)
.+...+++.|++++.
T Consensus 216 ~ANslaAi~aGa~~Vd 231 (524)
T PRK12344 216 VANSLAAVEAGARQVQ 231 (524)
T ss_pred HHHHHHHHHhCCCEEE
Confidence 345667778988863
No 182
>PRK07329 hypothetical protein; Provisional
Probab=85.03 E-value=1.5 Score=40.45 Aligned_cols=72 Identities=7% Similarity=-0.063 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCC-EEecCCCCCccC-CChHHHHHHHHHHCCCC
Q 017943 253 EEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP-LVLCTDDSGVFS-TSVSREYDLAASAFSLG 325 (363)
Q Consensus 253 ~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~-v~l~TDd~~~~~-~~l~~E~~~~~~~~~l~ 325 (363)
++.++.++++|+.+|++-.+=.. .........+++.+.+.|++ |++|||.=.... ..-.++...+++.+|++
T Consensus 168 ~~i~~~~~~~~~~lEiNt~~~~~-~~~~~~~~~~l~~~~~~g~~~i~~gSDAH~~~~vg~~~~~a~~~l~~~g~~ 241 (246)
T PRK07329 168 TRIFAKMIDNDLAFELNTKSMYL-YGNEGLYRYAIELYKQLGGKLFSIGSDAHKLEHYRYNFDDAQKLLKEHGIK 241 (246)
T ss_pred HHHHHHHHHcCCeEEEECccccc-CCCCcchHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 36789999999999998765221 11111112346777899986 999999532222 12235555566667764
No 183
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=85.02 E-value=36 Score=32.39 Aligned_cols=187 Identities=10% Similarity=0.024 Sum_probs=110.7
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHH-HHHHHc--CCceeeecCCCCChhhHHHHHhcCCCee-
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPAL-KFAREQ--GLQITLHCGEIPNKEEIQSMLDFLPQRI- 245 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~-~~A~~~--gl~~~~HagE~~~~~~i~~~l~~g~~ri- 245 (363)
.+.+.+...++-|.+.+.+.|+.+.-....+....+.+..+. ..|++. ++|+.+|..-. +.+.+.++++.|.+.+
T Consensus 26 ~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftSVm 104 (293)
T PRK07315 26 NNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDHG-HYEDALECIEVGYTSIM 104 (293)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCEEE
Confidence 356888889999988888777766433222222234444443 456777 77999999877 6677888998887653
Q ss_pred ---eEecc-----cCHHHHHHHhcCCCcEEEccccccccc---cccCCC--Ccc--HHHHHHcCCC-EEec--CC---CC
Q 017943 246 ---GHACC-----FEEEEWRKLKSSKIPVEICLTSNIRTE---TISSLD--IHH--FVDLYKAQHP-LVLC--TD---DS 304 (363)
Q Consensus 246 ---gHg~~-----~~~~~~~~l~~~~i~ve~cPtSN~~l~---~~~~~~--~~p--i~~l~~~Gv~-v~l~--TD---d~ 304 (363)
.|.-. ...+..++....|+++|.-.-. ..| .+.+.. ..| ..++.+-|+- +++| |= -+
T Consensus 105 ~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~--i~g~ed~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vHG~y~ 182 (293)
T PRK07315 105 FDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGT--IGGEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPYP 182 (293)
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCc--ccCcCccccCccCCCCHHHHHHHHHcCCCEEeeccccccccCC
Confidence 22211 1234667777889999754431 111 000111 233 4566777774 3333 32 11
Q ss_pred C---ccCCChHHHHHHHHH-H-----C--CCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 017943 305 G---VFSTSVSREYDLAAS-A-----F--SLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 359 (363)
Q Consensus 305 ~---~~~~~l~~E~~~~~~-~-----~--~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~ 359 (363)
+ -.+.++..++..... . - |++.+++.++..+++...-+..+.+....+.+.++.+
T Consensus 183 t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~i~~~~~~~~~~~~~ 248 (293)
T PRK07315 183 ENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTECQIAFANATRKFAR 248 (293)
T ss_pred CCCCcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHHH
Confidence 1 233556666666542 1 2 4888999999888887766666665555555555443
No 184
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=84.14 E-value=38 Score=32.00 Aligned_cols=187 Identities=10% Similarity=0.042 Sum_probs=111.2
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHH-HHHHHHcC-CceeeecCCCCChhhHHHHHhcCCCee--
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPA-LKFAREQG-LQITLHCGEIPNKEEIQSMLDFLPQRI-- 245 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~-~~~A~~~g-l~~~~HagE~~~~~~i~~~l~~g~~ri-- 245 (363)
.+.+.+...++.|.+.+.+.|+.+.-..-.+....+.+... ...|++.+ +|+.+|..-....+.+..+++.|.+.+
T Consensus 24 ~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmi 103 (282)
T TIGR01859 24 NNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMI 103 (282)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 35677888899888887776665543322222224445544 44578888 999999976666777888888886543
Q ss_pred --eEecc-----cCHHHHHHHhcCCCcEEEccccccccccccC------CCC-cc--HHHHHH-cCCC-EE--ecCC---
Q 017943 246 --GHACC-----FEEEEWRKLKSSKIPVEICLTSNIRTETISS------LDI-HH--FVDLYK-AQHP-LV--LCTD--- 302 (363)
Q Consensus 246 --gHg~~-----~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~------~~~-~p--i~~l~~-~Gv~-v~--l~TD--- 302 (363)
-|.-. ...+++++....|+.++.-.-. .|+..+ ... .| ..++.+ -|+. ++ +||=
T Consensus 104 d~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~---~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~ 180 (282)
T TIGR01859 104 DGSHLPFEENLALTKKVVEIAHAKGVSVEAELGT---LGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGK 180 (282)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCC---CcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccc
Confidence 12110 1124566777788887643321 111000 111 23 456665 6776 33 3331
Q ss_pred --CCCccCCChHHHHHHHHH-----HC--CCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 017943 303 --DSGVFSTSVSREYDLAAS-----AF--SLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 359 (363)
Q Consensus 303 --d~~~~~~~l~~E~~~~~~-----~~--~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~ 359 (363)
.....+.+...++..... +- |++.+++.++...++...-+.-+.+..+.+.+.++.+
T Consensus 181 ~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~~a~~~~~~~~~~ 246 (282)
T TIGR01859 181 YKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCRIAFTAAIRKVLT 246 (282)
T ss_pred cCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHHHHHHHHHHHHHH
Confidence 111223455555554432 22 7888999999888888887777777777777766653
No 185
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=84.04 E-value=45 Score=33.17 Aligned_cols=129 Identities=15% Similarity=0.106 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 017943 76 RITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (363)
Q Consensus 76 ~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (363)
.++..+++.++++|+-...++=..+ +-+ -++.-+++.+ .
T Consensus 98 DvVe~Fv~ka~~nGidvfRiFDAlN--D~R------Nl~~ai~a~k---------------------------------k 136 (472)
T COG5016 98 DVVEKFVEKAAENGIDVFRIFDALN--DVR------NLKTAIKAAK---------------------------------K 136 (472)
T ss_pred HHHHHHHHHHHhcCCcEEEechhcc--chh------HHHHHHHHHH---------------------------------h
Confidence 5777888889999998886643311 101 1222223322 2
Q ss_pred CCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCC---CceEEEecCCCCCCCChhhHHHHHHH-HHHcCCceeeecCCCCCh
Q 017943 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRD---LGVVGIDLSGNPTKGEWTTFLPALKF-AREQGLQITLHCGEIPNK 231 (363)
Q Consensus 156 ~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~---~~vvGidl~g~e~~~~~~~~~~~~~~-A~~~gl~~~~HagE~~~~ 231 (363)
.|-.+...+|...+ +.-....+++.+.++.. +.|+-=|++|- -+|...-++... -++.++++.+|..++.+-
T Consensus 137 ~G~h~q~~i~YT~s-PvHt~e~yv~~akel~~~g~DSIciKDmaGl---ltP~~ayelVk~iK~~~~~pv~lHtH~TsG~ 212 (472)
T COG5016 137 HGAHVQGTISYTTS-PVHTLEYYVELAKELLEMGVDSICIKDMAGL---LTPYEAYELVKAIKKELPVPVELHTHATSGM 212 (472)
T ss_pred cCceeEEEEEeccC-CcccHHHHHHHHHHHHHcCCCEEEeeccccc---CChHHHHHHHHHHHHhcCCeeEEecccccch
Confidence 45566666665443 22233445555555432 23333356663 233333333333 445789999999998876
Q ss_pred hh--HHHHHhcCCCeeeEec
Q 017943 232 EE--IQSMLDFLPQRIGHAC 249 (363)
Q Consensus 232 ~~--i~~~l~~g~~rigHg~ 249 (363)
.. ...+++.|+|+|+-++
T Consensus 213 a~m~ylkAvEAGvD~iDTAi 232 (472)
T COG5016 213 AEMTYLKAVEAGVDGIDTAI 232 (472)
T ss_pred HHHHHHHHHHhCcchhhhhh
Confidence 43 3457788999886443
No 186
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=83.95 E-value=3.5 Score=39.16 Aligned_cols=187 Identities=13% Similarity=0.065 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHH-HHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeee-Ee
Q 017943 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLP-ALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG-HA 248 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~-~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rig-Hg 248 (363)
+.+.+...++-|.+.+.+.|+.+.-..-.. .+.+.+.. +...|++.++|+.+|+.-..+.+.+..+++.|-+.+= =|
T Consensus 26 n~e~~~avi~AAe~~~sPvIlq~~~~~~~~-~~~~~~~~~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~GftSVM~Dg 104 (287)
T PF01116_consen 26 NLETARAVIEAAEELNSPVILQISPSEVKY-MGLEYLAAMVKAAAEEASVPVALHLDHGKDFEDIKRAIDAGFTSVMIDG 104 (287)
T ss_dssp SHHHHHHHHHHHHHTTS-EEEEEEHHHHHH-HHHHHHHHHHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcchhhhhh-hhHHHHHHHHHHHHHHcCCCEEeecccCCCHHHHHHHHHhCcccccccC
Confidence 457888888888888777777766332111 12334443 4556788899999999877777888889988876641 12
Q ss_pred cccC--------HHHHHHHhcCCCcEEEccccccccccc----------cCCCCcc--HHHHH-HcCC---CEEecCCC-
Q 017943 249 CCFE--------EEEWRKLKSSKIPVEICLTSNIRTETI----------SSLDIHH--FVDLY-KAQH---PLVLCTDD- 303 (363)
Q Consensus 249 ~~~~--------~~~~~~l~~~~i~ve~cPtSN~~l~~~----------~~~~~~p--i~~l~-~~Gv---~v~l~TDd- 303 (363)
..++ .+..++....|+.||...-. +++. .++-+.| ..++. +-|| -|++||==
T Consensus 105 S~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~---i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG 181 (287)
T PF01116_consen 105 SALPFEENIAITREVVEYAHAYGVSVEAELGH---IGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHG 181 (287)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESB---SSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSS
T ss_pred CcCCHHHHHHHHHHHHHhhhhhCCEEEEEeee---eeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCcccc
Confidence 2222 35678888899999876542 1111 1122345 34554 5565 35666531
Q ss_pred ------CCccCCChHHHHHHHH-HH-------CCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhc
Q 017943 304 ------SGVFSTSVSREYDLAA-SA-------FSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEKKL 361 (363)
Q Consensus 304 ------~~~~~~~l~~E~~~~~-~~-------~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~~~ 361 (363)
..-.+.++..++.... .. -|++.+++.++..+++.-.=+.-+.+..+.+.+.+..+++
T Consensus 182 ~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~~~~~ 253 (287)
T PF01116_consen 182 MYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNGISKINIGTELRRAFTDALREYLAEN 253 (287)
T ss_dssp SBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTTEEEEEESHHHHHHHHHHHHHHHHHS
T ss_pred ccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcCceEEEEehHHHHHHHHHHHHHHHhC
Confidence 1122346666777666 31 3678888999999988888778888877777777766653
No 187
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=83.92 E-value=21 Score=32.25 Aligned_cols=77 Identities=17% Similarity=0.146 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeee--Eeccc-CHHHHHHHhcCCCcEEEccccccccccccCCCC
Q 017943 208 LPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG--HACCF-EEEEWRKLKSSKIPVEICLTSNIRTETISSLDI 284 (363)
Q Consensus 208 ~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rig--Hg~~~-~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~ 284 (363)
.++.+.|+++|+++..=+ ..+.++.+++++|++.+- .+-.+ .+..++.++.-=-.+.++|+ |++ ..
T Consensus 98 ~~vi~~a~~~~i~~iPG~---~TptEi~~a~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~p~~~~~pt-----GGV---~~ 166 (212)
T PRK05718 98 PPLLKAAQEGPIPLIPGV---STPSELMLGMELGLRTFKFFPAEASGGVKMLKALAGPFPDVRFCPT-----GGI---SP 166 (212)
T ss_pred HHHHHHHHHcCCCEeCCC---CCHHHHHHHHHCCCCEEEEccchhccCHHHHHHHhccCCCCeEEEe-----CCC---CH
Confidence 367788889998876433 346668888999987642 12112 34555555544233555665 332 33
Q ss_pred ccHHHHHHcCC
Q 017943 285 HHFVDLYKAQH 295 (363)
Q Consensus 285 ~pi~~l~~~Gv 295 (363)
..+.+|+++|-
T Consensus 167 ~ni~~~l~ag~ 177 (212)
T PRK05718 167 ANYRDYLALPN 177 (212)
T ss_pred HHHHHHHhCCC
Confidence 57899999993
No 188
>PRK05588 histidinol-phosphatase; Provisional
Probab=83.12 E-value=2.3 Score=39.46 Aligned_cols=72 Identities=13% Similarity=0.060 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCC-EEecCCCCCccC-CChHHHHHHHHHHCCCC
Q 017943 253 EEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP-LVLCTDDSGVFS-TSVSREYDLAASAFSLG 325 (363)
Q Consensus 253 ~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~-v~l~TDd~~~~~-~~l~~E~~~~~~~~~l~ 325 (363)
++.++.++++|+.+|++-.+ +.-+........+++.+.+.|++ ++||||.=.... ..-.++...+++.+|++
T Consensus 169 ~~il~~~~~~g~~lEINt~~-l~~~~~~~~~~~~l~~~~~~g~~~i~lgSDAH~~~~vg~~~~~~~~~l~~~G~~ 242 (255)
T PRK05588 169 DEILKVLIEKEKVLEINTRR-LDDKRSVENLVKIYKRFYELGGKYITLGSDAHNIEDIGNNFKFALEIAEYCNLK 242 (255)
T ss_pred HHHHHHHHHcCCEEEEECcc-cCCCCCCCCHHHHHHHHHHcCCcEEEEECCCCCHHHHHhhHHHHHHHHHHcCCE
Confidence 46789999999999998744 21110000011247788999999 799999633233 22346666666777875
No 189
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=82.47 E-value=43 Score=31.36 Aligned_cols=153 Identities=19% Similarity=0.208 Sum_probs=92.3
Q ss_pred CCHHHHHHHHH----HHHhhCCC-ceEEEecCCCCCC-CC-------hhhHHHHHHHHHHcCCceeeecCCCCChhhHH-
Q 017943 170 ETTEAAMETVK----LALEMRDL-GVVGIDLSGNPTK-GE-------WTTFLPALKFAREQGLQITLHCGEIPNKEEIQ- 235 (363)
Q Consensus 170 ~~~e~~~~~~~----~a~~~~~~-~vvGidl~g~e~~-~~-------~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~- 235 (363)
++++++.+.+. +|.++-.+ ..+|++=+|-|.. .| .+.+..++++|++-|.++.+|. |+.+++...
T Consensus 97 ~~peea~e~m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHt-es~~~~~~~~ 175 (285)
T COG1831 97 RSPEEALEEMRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHT-ESLDEETYEE 175 (285)
T ss_pred cChHHHHHHHHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEec-CCCChHHHHH
Confidence 55666665554 44444433 4889987776542 33 2356678889999999999997 555554333
Q ss_pred --HHH-hcCC--Ce-eeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCC---CCC-
Q 017943 236 --SML-DFLP--QR-IGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTD---DSG- 305 (363)
Q Consensus 236 --~~l-~~g~--~r-igHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TD---d~~- 305 (363)
... +.|. .+ +=|-. .+. +....+.||.-.+ |.| ..-+.+-...|-++.+=|| ||.
T Consensus 176 i~~~ak~~G~~~~~VVkHha--~p~-v~~~~~~Gi~pSV-~as-----------r~~v~~a~~~g~~FmmETDyIDDp~R 240 (285)
T COG1831 176 IAEMAKEAGIKPYRVVKHHA--PPL-VLKCEEVGIFPSV-PAS-----------RKNVEDAAELGPRFMMETDYIDDPRR 240 (285)
T ss_pred HHHHHHHhCCCcceeEeecC--Ccc-chhhhhcCcCCcc-ccc-----------HHHHHHHHhcCCceEeecccccCccc
Confidence 322 2564 33 23422 221 2222334542211 111 1247778899999999998 432
Q ss_pred ---ccC-CChHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 017943 306 ---VFS-TSVSREYDLAASAFSLGRREMFQLAKSAVK 338 (363)
Q Consensus 306 ---~~~-~~l~~E~~~~~~~~~l~~~~l~~l~~na~~ 338 (363)
+.+ .++.+-.+...+...++.+.++++...-.+
T Consensus 241 pgavL~PktVPrr~~~i~~~g~~~ee~vy~i~~E~pe 277 (285)
T COG1831 241 PGAVLGPKTVPRRTREILEKGDLTEEDVYRIHVENPE 277 (285)
T ss_pred CCCcCCccchhHHHHHHHHhcCCcHHHHHHHHHhCHH
Confidence 333 678877777777788899999888754443
No 190
>PRK08123 histidinol-phosphatase; Reviewed
Probab=82.33 E-value=2 Score=40.29 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCCcEEEccccccccccccCCCCcc----HHHHHHcCCCEEecCCC
Q 017943 253 EEEWRKLKSSKIPVEICLTSNIRTETISSLDIHH----FVDLYKAQHPLVLCTDD 303 (363)
Q Consensus 253 ~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~p----i~~l~~~Gv~v~l~TDd 303 (363)
++.++.++++|+.+|++-.+ +.-+... ...| +..+.+.|+|++||||.
T Consensus 200 ~~il~~~~~~g~~lEINtsg-l~~~~~~--~~yP~~~il~~~~e~g~~itlgSDA 251 (270)
T PRK08123 200 EDILALIKKRGYELDFNTAG-LRKPYCG--EPYPPGEIITLAKKLGIPLVYGSDA 251 (270)
T ss_pred HHHHHHHHHcCCEEEEEchh-hcCCCCC--CCCCcHHHHHHHHHcCCCEEEeCCC
Confidence 46789999999999998733 3222111 1233 46667889999999995
No 191
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=82.02 E-value=26 Score=39.81 Aligned_cols=127 Identities=13% Similarity=0.120 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCC
Q 017943 76 RITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRG 155 (363)
Q Consensus 76 ~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (363)
.+.+.+++.+++.|+-...++=+.+ .++.+..+++.+++
T Consensus 625 ~vv~~f~~~~~~~GidifrifD~lN-----------~~~n~~~~~~~~~~------------------------------ 663 (1143)
T TIGR01235 625 NVVKYFVKQAAQGGIDIFRVFDSLN-----------WVENMRVGMDAVAE------------------------------ 663 (1143)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCc-----------CHHHHHHHHHHHHH------------------------------
Confidence 5677788899999999887743321 13333444444322
Q ss_pred CCcE--EEEEEEe-----eCC-CCHHHHHHHHHHHHhhCCCceEEE-ecCCCCCCCChhhHHHHHHHHHH-cCCceeeec
Q 017943 156 KKIY--VRLLLSI-----DRR-ETTEAAMETVKLALEMRDLGVVGI-DLSGNPTKGEWTTFLPALKFARE-QGLQITLHC 225 (363)
Q Consensus 156 ~gi~--~~li~~~-----~r~-~~~e~~~~~~~~a~~~~~~~vvGi-dl~g~e~~~~~~~~~~~~~~A~~-~gl~~~~Ha 225 (363)
.|.. ..+.++. .|. .+.+--.+.++.+.+...+ +++| |.+| ...|.....++...++ .++++.+|+
T Consensus 664 ~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad-~I~ikDt~G---ll~P~~~~~Lv~~lk~~~~~pi~~H~ 739 (1143)
T TIGR01235 664 AGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAH-ILGIKDMAG---LLKPAAAKLLIKALREKTDLPIHFHT 739 (1143)
T ss_pred cCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCC-EEEECCCcC---CcCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3333 3444443 122 1233333444444443222 3333 4455 2456666666666554 489999999
Q ss_pred CCCCCh--hhHHHHHhcCCCeeeE
Q 017943 226 GEIPNK--EEIQSMLDFLPQRIGH 247 (363)
Q Consensus 226 gE~~~~--~~i~~~l~~g~~rigH 247 (363)
.-+.+- .+...|++.|++.+.=
T Consensus 740 Hdt~Gla~an~laA~eaGad~vD~ 763 (1143)
T TIGR01235 740 HDTSGIAVASMLAAVEAGVDVVDV 763 (1143)
T ss_pred CCCCCcHHHHHHHHHHhCCCEEEe
Confidence 877654 3556778889988653
No 192
>PRK12999 pyruvate carboxylase; Reviewed
Probab=81.66 E-value=59 Score=37.06 Aligned_cols=127 Identities=13% Similarity=0.138 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCC
Q 017943 77 ITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGK 156 (363)
Q Consensus 77 ~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (363)
+..+.++.+++.|+..+.+.-+.+ .++.+..+++.+++ ...
T Consensus 628 v~~~~i~~a~~~Gid~~rifd~ln-----------d~~~~~~~i~~vk~----------------------------~g~ 668 (1146)
T PRK12999 628 VVRAFVREAAAAGIDVFRIFDSLN-----------WVENMRVAIDAVRE----------------------------TGK 668 (1146)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCC-----------hHHHHHHHHHHHHH----------------------------cCC
Confidence 566678889999999987754321 13334444444322 111
Q ss_pred CcEEEEEEEe-----eCC-CCHHHHHHHHHHHHhhCCCceEEE-ecCCCCCCCChhhHHHHHHHHHH-cCCceeeecCCC
Q 017943 157 KIYVRLLLSI-----DRR-ETTEAAMETVKLALEMRDLGVVGI-DLSGNPTKGEWTTFLPALKFARE-QGLQITLHCGEI 228 (363)
Q Consensus 157 gi~~~li~~~-----~r~-~~~e~~~~~~~~a~~~~~~~vvGi-dl~g~e~~~~~~~~~~~~~~A~~-~gl~~~~HagE~ 228 (363)
...+.+.++. .|. .+++-..+.++.+.+...+ .+.| |.+|- ..|.....++...|+ .++++.+|+.-+
T Consensus 669 ~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~-~i~ikDt~G~---l~P~~~~~lv~~lk~~~~ipi~~H~Hnt 744 (1146)
T PRK12999 669 IAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAH-ILAIKDMAGL---LKPAAAYELVSALKEEVDLPIHLHTHDT 744 (1146)
T ss_pred eEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCC-EEEECCccCC---CCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 1233444431 132 3444445555555554322 2332 55553 456667676666654 489999999877
Q ss_pred CCh--hhHHHHHhcCCCeee
Q 017943 229 PNK--EEIQSMLDFLPQRIG 246 (363)
Q Consensus 229 ~~~--~~i~~~l~~g~~rig 246 (363)
.+- .+...|++.|++.+.
T Consensus 745 ~Gla~an~laA~~aGad~vD 764 (1146)
T PRK12999 745 SGNGLATYLAAAEAGVDIVD 764 (1146)
T ss_pred CchHHHHHHHHHHhCCCEEE
Confidence 664 355677888988764
No 193
>PRK07627 dihydroorotase; Provisional
Probab=81.00 E-value=64 Score=32.32 Aligned_cols=152 Identities=13% Similarity=0.123 Sum_probs=83.9
Q ss_pred CceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCC---------C-----------hh-----hHHHHHhc--
Q 017943 188 LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIP---------N-----------KE-----EIQSMLDF-- 240 (363)
Q Consensus 188 ~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~---------~-----------~~-----~i~~~l~~-- 240 (363)
.+++||-..+.+. .+...+.++++.+++.|.++.+|+-... + |. .+..++.+
T Consensus 145 ~G~~~fk~~~~~~-~~~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~~~~~~g~~~~~~~~~~~P~~aE~~av~r~~~la~ 223 (425)
T PRK07627 145 AGCVGFSQANVPV-VDTQVLLRALQYASTFGFTVWLRPLDAFLGRGGVAASGAVASRLGLSGVPVAAETIALHTIFELMR 223 (425)
T ss_pred CCEEEEEcCCccc-CCHHHHHHHHHHHHhcCCEEEEecCChhhhhCCCcCCCHhHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 3788887543332 3456788899999999999999984211 0 10 11122222
Q ss_pred --CCCeeeEecccC-H---HHHHHHhcCC--CcEEEcccccccccc-cc--C--CC-Ccc---------HHHHHHcCCCE
Q 017943 241 --LPQRIGHACCFE-E---EEWRKLKSSK--IPVEICLTSNIRTET-IS--S--LD-IHH---------FVDLYKAQHPL 297 (363)
Q Consensus 241 --g~~rigHg~~~~-~---~~~~~l~~~~--i~ve~cPtSN~~l~~-~~--~--~~-~~p---------i~~l~~~Gv~v 297 (363)
|+ + -|-++++ . ++++..+++| |..|+||-.=..... +. + +. .+| +.+.++.|.-.
T Consensus 224 ~~~~-~-~hi~HvSs~~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~~d~~~L~~~l~~G~id 301 (425)
T PRK07627 224 VTGA-R-VHLARLSSAAGVALVRAAKAEGLPVTCDVGVNHVHLIDVDIGYFDSQFRLDPPLRSQRDREAIRAALADGTID 301 (425)
T ss_pred HHCC-c-EEEEeCCCHHHHHHHHHHHHCCCCeEEEeccchheEeHhHHhccCCceEEeCCCCCHHHHHHHHHHHhcCCCc
Confidence 32 1 3544443 3 4455556676 666899972111110 00 0 00 133 55667889999
Q ss_pred EecCCC-CCc------------cC-CChHHHH---HHHHHHCCCCHHHHHH-HHHHHHHHcCC
Q 017943 298 VLCTDD-SGV------------FS-TSVSREY---DLAASAFSLGRREMFQ-LAKSAVKFIFA 342 (363)
Q Consensus 298 ~l~TDd-~~~------------~~-~~l~~E~---~~~~~~~~l~~~~l~~-l~~na~~~sf~ 342 (363)
+|+||- |.. ++ +.+-.-+ .......+++.+++.+ ++.|+++...+
T Consensus 302 ~i~SDHaP~~~~~k~~~~~~~~~G~~g~e~~~pl~~~~~~~~~i~~~~~l~~~t~~pA~~lg~ 364 (425)
T PRK07627 302 AICSDHTPVDDDEKLLPFAEATPGATGLELLLPLTLKWADEAKVPLARALARITSAPARVLGL 364 (425)
T ss_pred EEEcCCCCCCHHHccCCHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCC
Confidence 999997 321 11 1111111 1122345899999665 56888888765
No 194
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=80.60 E-value=2 Score=39.80 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCCcEEEccccccccccccCCCCcc----HHHHHHcCCCEEecCCC
Q 017943 253 EEEWRKLKSSKIPVEICLTSNIRTETISSLDIHH----FVDLYKAQHPLVLCTDD 303 (363)
Q Consensus 253 ~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~p----i~~l~~~Gv~v~l~TDd 303 (363)
++.++.++++|+.+|++-.+ +..+ .. ...| ++.+.+.|+||++|||.
T Consensus 188 ~~il~~~~~~g~~lEiNt~g-~r~~-~~--~~yP~~~il~~~~~~g~~itlgSDA 238 (253)
T TIGR01856 188 QRILKLVASQGKALEFNTSG-LRKP-LE--EAYPSKELLNLAKELGIPLVLGSDA 238 (253)
T ss_pred HHHHHHHHHcCCEEEEEcHh-hcCC-CC--CCCCCHHHHHHHHHcCCCEEecCCC
Confidence 36789999999999998642 2222 11 1233 46667889999999995
No 195
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=80.06 E-value=23 Score=33.95 Aligned_cols=122 Identities=15% Similarity=0.122 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHcCCceee-ecCCCCChhhHHHHHhc--CCCeeeEec---------ccCHHHHHHHhcCCCcEEEccccc
Q 017943 206 TFLPALKFAREQGLQITL-HCGEIPNKEEIQSMLDF--LPQRIGHAC---------CFEEEEWRKLKSSKIPVEICLTSN 273 (363)
Q Consensus 206 ~~~~~~~~A~~~gl~~~~-HagE~~~~~~i~~~l~~--g~~rigHg~---------~~~~~~~~~l~~~~i~ve~cPtSN 273 (363)
.-+++.+.+.+.|+.+.+ |+++.. .++++++ .|--..|.. .++++.++.++++|=.|-++-...
T Consensus 150 ~Gk~lV~~~N~LgIiiDlSH~s~kt----~~Dvl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGvIgv~~~~~ 225 (313)
T COG2355 150 FGKELVREMNELGIIIDLSHLSDKT----FWDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGVIGVNFIPA 225 (313)
T ss_pred HHHHHHHHHHhcCCEEEecccCCcc----HHHHHhccCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCEEEEEeehh
Confidence 457788899999988864 886643 6777765 233344653 356789999999995554443333
Q ss_pred cccccccCCCCccHHHHH--------HcCCC-EEecCCCCCccC-------CChHHHHHHHHHHCCCCHHHHHHHH
Q 017943 274 IRTETISSLDIHHFVDLY--------KAQHP-LVLCTDDSGVFS-------TSVSREYDLAASAFSLGRREMFQLA 333 (363)
Q Consensus 274 ~~l~~~~~~~~~pi~~l~--------~~Gv~-v~l~TDd~~~~~-------~~l~~E~~~~~~~~~l~~~~l~~l~ 333 (363)
.... .+-...++..+. ..|+. |+||||=-+... .+-...+-.+...-|++.+++.+++
T Consensus 226 fl~~--~~~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~~p~gled~~~l~~l~~~L~~~G~~e~~i~~i~ 299 (313)
T COG2355 226 FLRP--GGAARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTGPPDGLEDVGKLPNLTAALIERGYSEEEIEKIA 299 (313)
T ss_pred hccC--CCCCCCCHHHHHHHHHHHHHhcCcceeEecccccCCCCCchhhcChhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3321 000122333333 24554 999999433222 2334445555556688888888776
No 196
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=79.54 E-value=26 Score=34.00 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=79.0
Q ss_pred ceEEEecCCC--CC--C---CChhhHHHHHHHHHHcCCceeeecCCCCChh--------hHH-HHHh--c-CCCeeeEec
Q 017943 189 GVVGIDLSGN--PT--K---GEWTTFLPALKFAREQGLQITLHCGEIPNKE--------EIQ-SMLD--F-LPQRIGHAC 249 (363)
Q Consensus 189 ~vvGidl~g~--e~--~---~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~--------~i~-~~l~--~-g~~rigHg~ 249 (363)
|+.||-+... .+ . .+...+.++++.+++.|+++.+|++...++- .+. .+.. . -+..--|..
T Consensus 92 Gv~g~Klf~~~~~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~~~~e~~a~~~~i~~lA~~~~~~~~~i~ 171 (341)
T TIGR00856 92 VVRAVKLYPAGATTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDIFDREARFIESVLEPLRQRFPALKVVLE 171 (341)
T ss_pred CeEEEEEccCCcccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeecCCCCCcccccchhhhhHHHHHHHHHHccCCeEEEE
Confidence 7889876521 11 1 1225688999999999999999997642110 111 1111 1 112223444
Q ss_pred cc-CHHHHHHHhc--CCCcEEEcccccccccc-c-----cC-C-CCccHH---------HHHHcCCCE-EecCCCCCc--
Q 017943 250 CF-EEEEWRKLKS--SKIPVEICLTSNIRTET-I-----SS-L-DIHHFV---------DLYKAQHPL-VLCTDDSGV-- 306 (363)
Q Consensus 250 ~~-~~~~~~~l~~--~~i~ve~cPtSN~~l~~-~-----~~-~-~~~pi~---------~l~~~Gv~v-~l~TDd~~~-- 306 (363)
++ +.+-++.+++ .+|..|+||--=..... + .. + -.+|+| +.+..|.-= +|+||-...
T Consensus 172 H~st~~~~~~i~~a~~~vt~E~~ph~L~l~~~~~~~~~~~~~~k~~PPlR~~~d~~aL~~~l~~G~id~~i~SDHaP~~~ 251 (341)
T TIGR00856 172 HITTKDAIDYVEDGNNRLAATITPQHLMFTRNDLLGGGVNPHLYCLPILKRNIHQQALLELAASGFPKFFLGTDSAPHAR 251 (341)
T ss_pred ecCcHHHHHHHHHcCCCEEEEEcHHHHhccHHHHhccCCCCceEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCCh
Confidence 44 3445555543 24888999952111110 0 00 0 123443 445567544 699995433
Q ss_pred ---------cC-CChHHHHHH---HHHHCCCCHHHHHHH-HHHHHHHcCC
Q 017943 307 ---------FS-TSVSREYDL---AASAFSLGRREMFQL-AKSAVKFIFA 342 (363)
Q Consensus 307 ---------~~-~~l~~E~~~---~~~~~~l~~~~l~~l-~~na~~~sf~ 342 (363)
+| .++-.-+-. +.+. +++.+++.++ +.|.++..-+
T Consensus 252 ~~K~~~~~~~G~~g~e~~l~~~~~~~~~-~~~l~~~v~~~s~nPAk~~gl 300 (341)
T TIGR00856 252 HRKESSCGCAGCFSAPTALPSYAEVFEE-MNALENLEAFCSDNGPQFYGL 300 (341)
T ss_pred hHcCCCCCCCCcccHHHHHHHHHHHHhc-CCCHHHHHHHHhHhHHHHhCC
Confidence 12 222111211 2222 6888886554 5788877666
No 197
>PRK00915 2-isopropylmalate synthase; Validated
Probab=79.03 E-value=42 Score=34.60 Aligned_cols=186 Identities=15% Similarity=0.139 Sum_probs=99.9
Q ss_pred CCCCHHHHHHHHHHhccCCCCCccchHHHHhh-cCCCHHHHHHhhh------HHHhhc-CCHHHHHHHHHHHHHHHHhcC
Q 017943 18 GSIRDSTLLELARVLGEKGVIVFSDVEHVIMK-SDRSLHEVFKLFD------LIHVLT-TDHATVTRITQEVVEDFASEN 89 (363)
Q Consensus 18 Gsi~~~~l~~la~~~~~~~~~~~~~~~~~~~~-~~~~l~~f~~~f~------~~~~~~-~~~e~~~~~~~~~~~~~~~~g 89 (363)
-+++.+.-+++++.+.+-|+.... --++. .+.++ ++++... .+..+. ...+++..... . ...-|
T Consensus 21 ~~~s~e~K~~ia~~L~~~Gv~~IE---~G~p~~s~~d~-~~v~~i~~~~~~~~i~a~~r~~~~did~a~~-a---~~~~~ 92 (513)
T PRK00915 21 ASLTVEEKLQIAKQLERLGVDVIE---AGFPASSPGDF-EAVKRIARTVKNSTVCGLARAVKKDIDAAAE-A---LKPAE 92 (513)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEE---EcCCCCChHHH-HHHHHHHhhCCCCEEEEEccCCHHHHHHHHH-H---hhcCC
Confidence 468888888888877666664211 00000 01111 2222221 011112 12444433322 2 22446
Q ss_pred CeEEEEeeCCCc-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEE-E
Q 017943 90 IVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLL-S 165 (363)
Q Consensus 90 V~y~E~r~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~-~ 165 (363)
+..+-+..+... + ..-+.+.+++++.+.+.++.+++ .|..+.+-. .
T Consensus 93 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~------------------------------~g~~v~f~~ed 142 (513)
T PRK00915 93 APRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARS------------------------------YTDDVEFSAED 142 (513)
T ss_pred CCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------CCCeEEEEeCC
Confidence 655555444322 2 12367889999988888887653 344443332 1
Q ss_pred eeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C----CceeeecCCCCCh--hhHHHHH
Q 017943 166 IDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G----LQITLHCGEIPNK--EEIQSML 238 (363)
Q Consensus 166 ~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~-g----l~~~~HagE~~~~--~~i~~~l 238 (363)
..| .+++...+.++.+.+...+.|.=-|..| ...|..+..+++..++. + +++.+|+.-..+- .+...++
T Consensus 143 ~~r-~d~~~l~~~~~~~~~~Ga~~i~l~DTvG---~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv 218 (513)
T PRK00915 143 ATR-TDLDFLCRVVEAAIDAGATTINIPDTVG---YTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAV 218 (513)
T ss_pred CCC-CCHHHHHHHHHHHHHcCCCEEEEccCCC---CCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHH
Confidence 233 3567778888887776433222234444 24677888888776653 3 7888888765553 3455677
Q ss_pred hcCCCee
Q 017943 239 DFLPQRI 245 (363)
Q Consensus 239 ~~g~~ri 245 (363)
+.|++++
T Consensus 219 ~aGa~~V 225 (513)
T PRK00915 219 EAGARQV 225 (513)
T ss_pred HhCCCEE
Confidence 7898876
No 198
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=78.92 E-value=8.1 Score=37.24 Aligned_cols=127 Identities=11% Similarity=0.099 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHcCCceee-ecCCCCChhhHHHHHhc--CCCeeeEec---------ccCHHHHHHHhcCCCcEEEccccc
Q 017943 206 TFLPALKFAREQGLQITL-HCGEIPNKEEIQSMLDF--LPQRIGHAC---------CFEEEEWRKLKSSKIPVEICLTSN 273 (363)
Q Consensus 206 ~~~~~~~~A~~~gl~~~~-HagE~~~~~~i~~~l~~--g~~rigHg~---------~~~~~~~~~l~~~~i~ve~cPtSN 273 (363)
.-+++.+...+.|+-+.+ |++| ...+++++. .|--+.|.. .++++.++.++++|=.|=+|..+.
T Consensus 161 ~G~~vV~~mn~lGm~vDvSH~s~----~t~~Dv~~~s~~PviaSHSn~ral~~h~RNltDe~iraia~~GGviGi~~~~~ 236 (320)
T PF01244_consen 161 FGREVVREMNRLGMLVDVSHLSE----KTFWDVLEISKKPVIASHSNARALCPHPRNLTDEQIRAIAERGGVIGINFYPA 236 (320)
T ss_dssp HHHHHHHHHHHHT-EEE-TTB-H----HHHHHHHHH-SSEEEECCEEBTTTS--TTSB-HHHHHHHHHTT-EEEEESSHH
T ss_pred HHHHHHHHHHHcCCeeeeccCCH----HHHHHHHhhcCCCEEEeccChHhhCCCCCCCCHHHHHHHHHCCcEEEEEcchh
Confidence 456788888888877754 6643 456777764 344556653 356799999999996666665544
Q ss_pred cccccccCCCCccHHHHH-------H-cCC-CEEecCCCCCcc-------CCChHHHHHHHHHHCCCCHHHHHHHH-HHH
Q 017943 274 IRTETISSLDIHHFVDLY-------K-AQH-PLVLCTDDSGVF-------STSVSREYDLAASAFSLGRREMFQLA-KSA 336 (363)
Q Consensus 274 ~~l~~~~~~~~~pi~~l~-------~-~Gv-~v~l~TDd~~~~-------~~~l~~E~~~~~~~~~l~~~~l~~l~-~na 336 (363)
....... ....+..+. + .|+ .|+||||--+.. +.+-...+......-|++.+++.++. .|.
T Consensus 237 fl~~~~~--~~~~~~~~~~Hi~y~~~l~G~dhVgiGsDfdg~~~~~~gl~~~~~~~~l~~~L~~rG~s~~~i~kI~g~N~ 314 (320)
T PF01244_consen 237 FLGDDWD--PRASLDDLVDHIDYIVDLVGIDHVGIGSDFDGIDGPPEGLEDPSDLPNLTEELLKRGYSEEDIEKILGGNF 314 (320)
T ss_dssp HHSTTHS--SG-BHHHHHHHHHHHHHHH-GGGEEEE--BTTTSSHBBTBSSGGGHHHHHHHHHHTTS-HHHHHHHHTHHH
T ss_pred hhccccc--ccccHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCCCccCCHHHHHHHHHHHHHCCCCHHHHHHHHhHhH
Confidence 3221100 112233332 2 344 499999942221 22223333333344699999999886 555
Q ss_pred HH
Q 017943 337 VK 338 (363)
Q Consensus 337 ~~ 338 (363)
++
T Consensus 315 lR 316 (320)
T PF01244_consen 315 LR 316 (320)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 199
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=78.52 E-value=14 Score=35.41 Aligned_cols=189 Identities=8% Similarity=-0.008 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHH-HHHHcC-CceeeecCCCCChhhHHHHHhcCCCee-e
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALK-FAREQG-LQITLHCGEIPNKEEIQSMLDFLPQRI-G 246 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~-~A~~~g-l~~~~HagE~~~~~~i~~~l~~g~~ri-g 246 (363)
.+.+.+...++.|.+.+.+.|+.+.-..-.+ ...+.+..+.. .|++.. +|+.+|+.-..+.+.+..+++.|-+.+ -
T Consensus 25 ~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~-~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~ 103 (307)
T PRK05835 25 VNFEMLNAIFEAGNEENSPLFIQASEGAIKY-MGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMI 103 (307)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCccHHhh-CChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 3568888899999988887777755332222 23445555554 466775 999999988777888888898886653 1
Q ss_pred Eeccc--------CHHHHHHHhcCCCcEEEccccc--cccc----cccCCCCcc--HHHHHHc-CC---CEEecCCCCCc
Q 017943 247 HACCF--------EEEEWRKLKSSKIPVEICLTSN--IRTE----TISSLDIHH--FVDLYKA-QH---PLVLCTDDSGV 306 (363)
Q Consensus 247 Hg~~~--------~~~~~~~l~~~~i~ve~cPtSN--~~l~----~~~~~~~~p--i~~l~~~-Gv---~v~l~TDd~~~ 306 (363)
=|..+ +.+.+++....|+.||.-.-.= .--+ .-...-+.| ..+|.+. || -|+|||==..+
T Consensus 104 DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Y 183 (307)
T PRK05835 104 DASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAF 183 (307)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCcccccc
Confidence 12222 2356777788888887433210 0000 000011223 3455542 54 34555532111
Q ss_pred -------cCCChHHHHHHHHHH-------CCCCHH---------------------HHHHHHHHHHHHcCCChHHHHHHH
Q 017943 307 -------FSTSVSREYDLAASA-------FSLGRR---------------------EMFQLAKSAVKFIFANGRVKEDLK 351 (363)
Q Consensus 307 -------~~~~l~~E~~~~~~~-------~~l~~~---------------------~l~~l~~na~~~sf~~~~~K~~l~ 351 (363)
.+.++.+|++..... -|++.+ ++.++..+++.-.=++-+.+..+.
T Consensus 184 k~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~ 263 (307)
T PRK05835 184 KFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFI 263 (307)
T ss_pred CCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChHHHHHHH
Confidence 122344444333211 133443 777777777777777777777766
Q ss_pred HHHHHHHh
Q 017943 352 EIFDLAEK 359 (363)
Q Consensus 352 ~~~~~~~~ 359 (363)
+.+.+..+
T Consensus 264 ~~~~~~~~ 271 (307)
T PRK05835 264 AEVRKVAN 271 (307)
T ss_pred HHHHHHHH
Confidence 66666554
No 200
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=78.46 E-value=16 Score=35.66 Aligned_cols=96 Identities=14% Similarity=0.223 Sum_probs=55.6
Q ss_pred HHHHHHHHhhCCC-ceEE---EecCCCCCCCChhhHHHHHHHHHHcCCce------eeecCCCCCh-hhHHHHHhcCCCe
Q 017943 176 METVKLALEMRDL-GVVG---IDLSGNPTKGEWTTFLPALKFAREQGLQI------TLHCGEIPNK-EEIQSMLDFLPQR 244 (363)
Q Consensus 176 ~~~~~~a~~~~~~-~vvG---idl~g~e~~~~~~~~~~~~~~A~~~gl~~------~~HagE~~~~-~~i~~~l~~g~~r 244 (363)
.+.+..+++...+ ..+| +++-+....++.+++.+..+.|+++|.++ .+|.++.... ..+..+.+.|++.
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDa 95 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDA 95 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCE
Confidence 4455555555322 2344 33333333477888999999999999754 4455544321 3345556678887
Q ss_pred eeEecccCHHHHHHHhcCC--CcEEEcccccc
Q 017943 245 IGHACCFEEEEWRKLKSSK--IPVEICLTSNI 274 (363)
Q Consensus 245 igHg~~~~~~~~~~l~~~~--i~ve~cPtSN~ 274 (363)
+ +.-++.++.++++.+ +++.+.+..|+
T Consensus 96 v---iv~Dpg~i~l~~e~~p~l~ih~S~q~~v 124 (347)
T COG0826 96 V---IVADPGLIMLARERGPDLPIHVSTQANV 124 (347)
T ss_pred E---EEcCHHHHHHHHHhCCCCcEEEeeeEec
Confidence 4 223566666666666 55555555444
No 201
>PRK09059 dihydroorotase; Validated
Probab=77.12 E-value=84 Score=31.50 Aligned_cols=152 Identities=11% Similarity=0.066 Sum_probs=79.7
Q ss_pred CceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCC-------C-------------hh-----hHHHHHhc--
Q 017943 188 LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIP-------N-------------KE-----EIQSMLDF-- 240 (363)
Q Consensus 188 ~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~-------~-------------~~-----~i~~~l~~-- 240 (363)
.++.+|--.+.. ..+...+.++++.+++.|.++.+|+-... . |. .+..++.+
T Consensus 150 ~Gv~~f~~~~~~-~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~ 228 (429)
T PRK09059 150 AGAVAFTDGRRS-VANTQVMRRALTYARDFDAVIVHETRDPDLGGNGVMNEGLFASWLGLSGIPREAEVIPLERDLRLAA 228 (429)
T ss_pred cCcEEEecCCcc-cCCHHHHHHHHHHHHhcCCEEEEecCChhhhcCCCcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 367777522211 12345577899999999999999974321 0 00 01112221
Q ss_pred --CCCeeeEecccC-H---HHHHHHhcCC--CcEEEccccccccc-----cccC-C-CCccHH---------HHHHcCCC
Q 017943 241 --LPQRIGHACCFE-E---EEWRKLKSSK--IPVEICLTSNIRTE-----TISS-L-DIHHFV---------DLYKAQHP 296 (363)
Q Consensus 241 --g~~rigHg~~~~-~---~~~~~l~~~~--i~ve~cPtSN~~l~-----~~~~-~-~~~pi~---------~l~~~Gv~ 296 (363)
|+ | -|-.+++ . ++++..+++| +..|+||-. +.+. .... + -.+|+| +.+..|.-
T Consensus 229 ~~~~-~-~hi~hvs~~~~~~~i~~ak~~g~~vt~ev~phh-L~l~~~~~~~~~~~~kvnPPLR~~~d~~~L~~~l~~g~i 305 (429)
T PRK09059 229 LTRG-R-YHAAQISCAESAEALRRAKDRGLKVTAGVSINH-LSLNENDIGEYRTFFKLSPPLRTEDDRVAMVEAVASGTI 305 (429)
T ss_pred HHCC-c-EEEEecCCHHHHHHHHHHHHCCCCEEEeecHHH-HhccHHHHhccCCccEEcCCCCCHHHHHHHHHHHHcCCC
Confidence 22 2 3555553 2 4555566676 556899862 1111 0000 0 124443 33445666
Q ss_pred EEecCCCCCcc-------------C-CC---hHHHHHHHHHHCCCCHHHHHH-HHHHHHHHcCCC
Q 017943 297 LVLCTDDSGVF-------------S-TS---VSREYDLAASAFSLGRREMFQ-LAKSAVKFIFAN 343 (363)
Q Consensus 297 v~l~TDd~~~~-------------~-~~---l~~E~~~~~~~~~l~~~~l~~-l~~na~~~sf~~ 343 (363)
=+|+||..... | .+ +..-+..+....+++.+++.+ ++.|+.+..-++
T Consensus 306 d~i~sDh~p~~~~~K~~~~~~~~~G~~gle~~l~~~~~~v~~~~l~l~~~~~~~s~nPA~~~gl~ 370 (429)
T PRK09059 306 DIIVSSHDPQDVDTKRLPFSEAAAGAIGLETLLAAALRLYHNGEVPLLRLIEALSTRPAEIFGLP 370 (429)
T ss_pred cEEEeCCCCCCHHHCcCChhhCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCC
Confidence 66889964331 1 11 222223333345789999776 457988887663
No 202
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=76.79 E-value=85 Score=31.40 Aligned_cols=139 Identities=12% Similarity=0.152 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEeeCCCc-c--ccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccccc
Q 017943 73 TVTRITQEVVEDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDA 149 (363)
Q Consensus 73 ~~~~~~~~~~~~~~~~gV~y~E~r~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (363)
.+.+....-++.+..-++--+-+..+-+. | ...+.+.+++++.+.+.++-+++
T Consensus 73 ~~~~~~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~------------------------ 128 (409)
T COG0119 73 ALARAIKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARD------------------------ 128 (409)
T ss_pred hhHHhHHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------
Confidence 34455555677777788877766665442 2 22358889999998888887643
Q ss_pred ccCCCCCCcEEEE-EEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C--Cceeeec
Q 017943 150 CNGTRGKKIYVRL-LLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G--LQITLHC 225 (363)
Q Consensus 150 ~~~~~~~gi~~~l-i~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~-g--l~~~~Ha 225 (363)
.|+.+++ .-++.| .+++...+.++.+.......|.=-|-+| ...|..+...++..++. . .++.+|+
T Consensus 129 ------~g~~~~~~~Ed~~r-t~~~~l~~~~~~~~~~ga~~i~l~DTvG---~~~P~~~~~~i~~l~~~v~~~~~l~~H~ 198 (409)
T COG0119 129 ------HGLEVRFSAEDATR-TDPEFLAEVVKAAIEAGADRINLPDTVG---VATPNEVADIIEALKANVPNKVILSVHC 198 (409)
T ss_pred ------cCCeEEEEeecccc-CCHHHHHHHHHHHHHcCCcEEEECCCcC---ccCHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 4566665 334444 4567788888888754332232234444 24567777777776553 3 8899999
Q ss_pred CCCCCh--hhHHHHHhcCCCee
Q 017943 226 GEIPNK--EEIQSMLDFLPQRI 245 (363)
Q Consensus 226 gE~~~~--~~i~~~l~~g~~ri 245 (363)
.-..+- .+...+++.|++++
T Consensus 199 HnD~G~AvANslaAv~aGa~~v 220 (409)
T COG0119 199 HNDLGMAVANSLAAVEAGADQV 220 (409)
T ss_pred cCCcchHHHHHHHHHHcCCcEE
Confidence 766553 34556777888875
No 203
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=76.61 E-value=12 Score=34.41 Aligned_cols=63 Identities=14% Similarity=-0.046 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccC-CChHHHHHHHHH
Q 017943 253 EEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAAS 320 (363)
Q Consensus 253 ~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~-~~l~~E~~~~~~ 320 (363)
.+.++.++++|+.++++-+ +-. .+....-++...+.|++++||||.=.... .++......+.+
T Consensus 150 ~~~~~~~~~~g~aleins~-~~~----~~~~~~~~~~~~e~G~~~~i~tDaH~~~~lg~~~~~~~~~~~ 213 (237)
T COG1387 150 EELIELAEKNGKALEINSR-PGR----LDPNSEILRLARELGVKLAIGTDAHRPGDLGDMYFGVKIARR 213 (237)
T ss_pred HHHHHHHHHhCcEEeecCC-cCc----cCchHHHHHHHHHhCCeEEeecCcCChhhcccchHHHHHHHH
Confidence 4689999999999998654 111 11122335667788999999999754454 455555555544
No 204
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=76.52 E-value=45 Score=34.33 Aligned_cols=107 Identities=11% Similarity=0.109 Sum_probs=66.5
Q ss_pred CCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcE-EEEEE-EeeCCCCHHHHHHHHHHH
Q 017943 105 IGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIY-VRLLL-SIDRRETTEAAMETVKLA 182 (363)
Q Consensus 105 ~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~-~~li~-~~~r~~~~e~~~~~~~~a 182 (363)
-+.+.+++++.+.+.++.+++ .|.. +.+-. ...|. +++-..+.++.+
T Consensus 200 l~~s~ee~l~~~~~~V~~Ak~------------------------------~G~~~v~f~~EDa~Rt-d~efl~~~~~~a 248 (503)
T PLN03228 200 LKKTKEEVIEMAVSSIRYAKS------------------------------LGFHDIQFGCEDGGRS-DKEFLCKILGEA 248 (503)
T ss_pred hCCCHHHHHHHHHHHHHHHHH------------------------------cCCceEEecccccccc-CHHHHHHHHHHH
Confidence 467889999988888887653 2222 22222 23343 456667777777
Q ss_pred HhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-----CCceeeecCCCCCh--hhHHHHHhcCCCee
Q 017943 183 LEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDFLPQRI 245 (363)
Q Consensus 183 ~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~-----gl~~~~HagE~~~~--~~i~~~l~~g~~ri 245 (363)
.+...+.|.=-|..| ...|..+..++...++. ++++.+|+.-..+- .+...+++.|++.+
T Consensus 249 ~~~Gad~I~l~DTvG---~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~V 315 (503)
T PLN03228 249 IKAGATSVGIADTVG---INMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQV 315 (503)
T ss_pred HhcCCCEEEEecCCC---CCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEE
Confidence 776443332234444 24567787777776653 47788888765553 34566777888876
No 205
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=75.68 E-value=57 Score=33.48 Aligned_cols=107 Identities=12% Similarity=0.074 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEEE-eeCCCCHHHHHHHHHHHH
Q 017943 105 IGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLS-IDRRETTEAAMETVKLAL 183 (363)
Q Consensus 105 ~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~-~~r~~~~e~~~~~~~~a~ 183 (363)
-+.+.+++++.+.+.++.+++ .|..+.+-.- ..| .+++...+.++.+.
T Consensus 108 l~~s~~e~l~~~~~~v~~a~~------------------------------~g~~v~f~~Ed~~r-~d~~~l~~~~~~~~ 156 (494)
T TIGR00973 108 LKMTRDEVLERAVGMVKYAKN------------------------------FTDDVEFSCEDAGR-TEIPFLARIVEAAI 156 (494)
T ss_pred hCCCHHHHHHHHHHHHHHHHH------------------------------cCCeEEEEcCCCCC-CCHHHHHHHHHHHH
Confidence 478889999988888887653 2333333222 223 35677888888877
Q ss_pred hhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-----CCceeeecCCCCCh--hhHHHHHhcCCCee
Q 017943 184 EMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDFLPQRI 245 (363)
Q Consensus 184 ~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~-----gl~~~~HagE~~~~--~~i~~~l~~g~~ri 245 (363)
+...+.|.=-|..| ...|..+..+++..++. ++++.+|+.-..+- .+...+++.|++++
T Consensus 157 ~~Ga~~i~l~DTvG---~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~v 222 (494)
T TIGR00973 157 NAGATTINIPDTVG---YALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQV 222 (494)
T ss_pred HcCCCEEEeCCCCC---CCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEE
Confidence 76333222223344 24577888888776653 36688888655443 34556777898886
No 206
>PRK10027 cryptic adenine deaminase; Provisional
Probab=74.81 E-value=1.1e+02 Score=32.27 Aligned_cols=143 Identities=18% Similarity=0.205 Sum_probs=84.4
Q ss_pred CceEEEe-cCCCCC--CCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEecccCHHHHHHHhcCCC
Q 017943 188 LGVVGID-LSGNPT--KGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKI 264 (363)
Q Consensus 188 ~~vvGid-l~g~e~--~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~~~~~~~~l~~~~i 264 (363)
+.|+|++ +-.-+. ..+++.+.++.. + .|.++.=|+.-..+ ..+...+..|... .|=..-.++.+++++ +|.
T Consensus 178 ~~v~glgEvMn~~~V~~~d~~~~~ki~~-~--~~~~idGH~p~l~g-~~L~ay~aaGi~s-DHE~~t~eea~eklr-~Gm 251 (588)
T PRK10027 178 PQVTGLAEMMDYPGVISGQNALLDKLDA-F--RHLTLDGHCPGLGG-KELNAYIAAGIEN-CHESYQLEEGRRKLQ-LGM 251 (588)
T ss_pred CCceeEEeccCccccccCCHHHHHHHHH-h--CCCceECCCCCCCh-HHHHHHHHcCCCC-CcccCCHHHHHHHHH-CCC
Confidence 4688876 222121 134555666653 3 79999999964443 2344434455433 565544455566554 788
Q ss_pred cEEEccccccccccccCCCCccHHHH-HHcC-CCEEecCCCCCcc----CCChHHHHHHHHHHCCCCHHHHHH-HHHHHH
Q 017943 265 PVEICLTSNIRTETISSLDIHHFVDL-YKAQ-HPLVLCTDDSGVF----STSVSREYDLAASAFSLGRREMFQ-LAKSAV 337 (363)
Q Consensus 265 ~ve~cPtSN~~l~~~~~~~~~pi~~l-~~~G-v~v~l~TDd~~~~----~~~l~~E~~~~~~~~~l~~~~l~~-l~~na~ 337 (363)
.+.+--.|-.+ ++ .-+..+ .+.. -++++||||.... ...|..-.+.+.+..|+++.+..+ .+.|++
T Consensus 252 ~v~iRegS~~~-----nl--~~l~~~~~~~~~~~~~l~TDd~~~~~l~~~Ghi~~~vr~av~~~Gi~~~~Ai~mAT~nPA 324 (588)
T PRK10027 252 SLMIREGSAAR-----NL--NALAPLINEFNSPQCMLCTDDRNPWEIAHEGHIDALIRRLIEQHNVPLHVAYRVASWSTA 324 (588)
T ss_pred EEEEeCCcccc-----CH--HHHHHHhhccCCCeEEEEcCCCChHHHHhccCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88765544111 10 011111 1111 3689999996432 256777888888878999999555 568999
Q ss_pred HHcCCC
Q 017943 338 KFIFAN 343 (363)
Q Consensus 338 ~~sf~~ 343 (363)
++..++
T Consensus 325 ~~lgl~ 330 (588)
T PRK10027 325 RHFGLN 330 (588)
T ss_pred HHcCCC
Confidence 998775
No 207
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=73.93 E-value=82 Score=29.85 Aligned_cols=92 Identities=13% Similarity=0.143 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHHcCCceeeecCCCCC--------------hhhHHHHH-hcCCCee------eEeccc----CHHHHHH
Q 017943 204 WTTFLPALKFAREQGLQITLHCGEIPN--------------KEEIQSML-DFLPQRI------GHACCF----EEEEWRK 258 (363)
Q Consensus 204 ~~~~~~~~~~A~~~gl~~~~HagE~~~--------------~~~i~~~l-~~g~~ri------gHg~~~----~~~~~~~ 258 (363)
.+..+++.+.|+.+|+.+-.=.|..++ |+...+.+ +.|+|.+ .||.+- +-+.++.
T Consensus 114 i~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~ 193 (283)
T PRK07998 114 IAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKR 193 (283)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHH
Confidence 356778999999999988555444322 22223322 2477654 499873 4466666
Q ss_pred HhcC-CCcEEEccccccccccccCCCCccHHHHHHcCCC-EEecCCC
Q 017943 259 LKSS-KIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP-LVLCTDD 303 (363)
Q Consensus 259 l~~~-~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~-v~l~TDd 303 (363)
+.+. ++|+++-=. ++.....+++..+.|+. |-++||-
T Consensus 194 I~~~~~vPLVlHGg--------SG~~~e~~~~ai~~Gi~KiNi~Tel 232 (283)
T PRK07998 194 IAEVSPVPLVIHGG--------SGIPPEILRSFVNYKVAKVNIASDL 232 (283)
T ss_pred HHhhCCCCEEEeCC--------CCCCHHHHHHHHHcCCcEEEECHHH
Confidence 6554 555544332 34445668899999985 8888874
No 208
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=73.11 E-value=30 Score=33.95 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhhCCCceEE--EecCCCCCC--CChhhHHHHHHHHHHcCCceeeecCCCC------ChhhHHHHHhc
Q 017943 171 TTEAAMETVKLALEMRDLGVVG--IDLSGNPTK--GEWTTFLPALKFAREQGLQITLHCGEIP------NKEEIQSMLDF 240 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvG--idl~g~e~~--~~~~~~~~~~~~A~~~gl~~~~HagE~~------~~~~i~~~l~~ 240 (363)
+.++..+.++.|.++ |+.. ..|.-.|.. .-...+.++.+.|+++|+.+.+-..... +.+++....++
T Consensus 12 ~~~~~~~yi~~a~~~---Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl~~~~~l 88 (357)
T PF05913_consen 12 SFEENKAYIEKAAKY---GFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDDLSFFKEL 88 (357)
T ss_dssp -HHHHHHHHHHHHCT---TEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBTHHHHHH
T ss_pred CHHHHHHHHHHHHHC---CCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHc
Confidence 467778888888776 3222 133333321 2246788999999999999998874321 01123344456
Q ss_pred CC--CeeeEecccCHHHHHHHhcCCCcEEEcccc
Q 017943 241 LP--QRIGHACCFEEEEWRKLKSSKIPVEICLTS 272 (363)
Q Consensus 241 g~--~rigHg~~~~~~~~~~l~~~~i~ve~cPtS 272 (363)
|. -|++.|+. .+.+..|..+|+.|+++.+.
T Consensus 89 Gi~~lRlD~Gf~--~~~ia~ls~ng~~I~LNASt 120 (357)
T PF05913_consen 89 GIDGLRLDYGFS--GEEIAKLSKNGIKIELNAST 120 (357)
T ss_dssp T-SEEEESSS-S--CHHHHHHTTT-SEEEEETTT
T ss_pred CCCEEEECCCCC--HHHHHHHHhCCCEEEEECCC
Confidence 75 48888874 45666776669999998765
No 209
>PRK07094 biotin synthase; Provisional
Probab=72.46 E-value=36 Score=32.54 Aligned_cols=91 Identities=21% Similarity=0.133 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCC-CCCChhhHHHHHHHHHH-cCCceeeecCCCCChhhHHHHHhcCCCeeeEe
Q 017943 171 TTEAAMETVKLALEMRDLGVVGIDLSGNP-TKGEWTTFLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 248 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvGidl~g~e-~~~~~~~~~~~~~~A~~-~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg 248 (363)
++++..+.++.+.+. ++..|-+.|.+ ...+.+.+.++++..++ .++.++++.|... ++.+...-+.|.+++-+|
T Consensus 71 s~eei~~~~~~~~~~---g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~~~-~e~l~~Lk~aG~~~v~~g 146 (323)
T PRK07094 71 SPEEILECAKKAYEL---GYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGERS-YEEYKAWKEAGADRYLLR 146 (323)
T ss_pred CHHHHHHHHHHHHHC---CCCEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecCCCC-HHHHHHHHHcCCCEEEec
Confidence 566666666655543 44455555443 33456778888888887 5888888887643 444555556899999888
Q ss_pred ccc-CH----------------HHHHHHhcCCCc
Q 017943 249 CCF-EE----------------EEWRKLKSSKIP 265 (363)
Q Consensus 249 ~~~-~~----------------~~~~~l~~~~i~ 265 (363)
+.. ++ +.++.+.+.|+.
T Consensus 147 lEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~ 180 (323)
T PRK07094 147 HETADKELYAKLHPGMSFENRIACLKDLKELGYE 180 (323)
T ss_pred cccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCe
Confidence 753 33 245667777764
No 210
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=72.43 E-value=41 Score=31.54 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEecccCHH----------------HHHHHhcCCCcE
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEE----------------EWRKLKSSKIPV 266 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~~~~----------------~~~~l~~~~i~v 266 (363)
+.+..+.+..++.|+++.++.|- .+++.+...-+.|++++.++...+++ .++.+++.|+.+
T Consensus 98 ~~~~~i~~~~~~~~i~~~~~~g~-~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v 174 (296)
T TIGR00433 98 EYVEAMVQIVEEMGLKTCATLGL-LDPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKV 174 (296)
T ss_pred HHHHHHHHHHHhCCCeEEecCCC-CCHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEE
Confidence 34566666677789999888873 34555555556899998888764432 356677777654
No 211
>PLN02321 2-isopropylmalate synthase
Probab=71.25 E-value=77 Score=33.60 Aligned_cols=107 Identities=7% Similarity=0.027 Sum_probs=66.4
Q ss_pred CCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc-EEEEEE-EeeCCCCHHHHHHHHHHH
Q 017943 105 IGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI-YVRLLL-SIDRRETTEAAMETVKLA 182 (363)
Q Consensus 105 ~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi-~~~li~-~~~r~~~~e~~~~~~~~a 182 (363)
-+.+.+++++.+.+.++.+++ .|. .+.+-. ...| .+++...+.++.+
T Consensus 201 l~~t~ee~l~~~~~~V~~Ak~------------------------------~G~~~v~fs~EDa~r-td~d~l~~~~~~a 249 (632)
T PLN02321 201 LRKTPDEVVEIARDMVKYARS------------------------------LGCEDVEFSPEDAGR-SDPEFLYRILGEV 249 (632)
T ss_pred hCCCHHHHHHHHHHHHHHHHH------------------------------cCCceEEEecccCCC-CCHHHHHHHHHHH
Confidence 468899999998888887654 122 222222 2233 3567778888888
Q ss_pred HhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-----CCceeeecCCCCCh--hhHHHHHhcCCCee
Q 017943 183 LEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDFLPQRI 245 (363)
Q Consensus 183 ~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~-----gl~~~~HagE~~~~--~~i~~~l~~g~~ri 245 (363)
.+...+ -|.|+..-....|..+..+++..++. ++++.+|+.-..+- .+...+++.|++++
T Consensus 250 ~~aGa~---~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~V 316 (632)
T PLN02321 250 IKAGAT---TLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQV 316 (632)
T ss_pred HHcCCC---EEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEE
Confidence 776433 34333211124577888888877654 46688888654443 34566777898886
No 212
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=71.25 E-value=1.1e+02 Score=31.26 Aligned_cols=194 Identities=15% Similarity=0.176 Sum_probs=104.3
Q ss_pred cCCCCCHHHHHHHHHHhccCCCCCc--cchHHHHhhcCCCHHHHHHhhh------HHHhhcCCHHHHHHHHHHHHHHHHh
Q 017943 16 LNGSIRDSTLLELARVLGEKGVIVF--SDVEHVIMKSDRSLHEVFKLFD------LIHVLTTDHATVTRITQEVVEDFAS 87 (363)
Q Consensus 16 L~Gsi~~~~l~~la~~~~~~~~~~~--~~~~~~~~~~~~~l~~f~~~f~------~~~~~~~~~e~~~~~~~~~~~~~~~ 87 (363)
....+.++.-+++++++.+-|+... ..+. ....+++..-..+. .|+.+.+..++.-+.+.|.+..+.+
T Consensus 72 ~ga~~~~~qK~eiar~L~~~gvd~IEv~fP~----aSe~~~~~~~~i~k~~g~~~~I~~l~rc~~~di~~tvEAl~~aKr 147 (560)
T KOG2367|consen 72 PGAFLTTEQKLEIARQLAKLGVDIIEVGFPV----ASEQDFEDCKTIAKTLGYVPVICTLIRCHMDDIERTVEALKYAKR 147 (560)
T ss_pred CCCcCCcHHHHHHHHHHHhcCcCEEEecCcc----cCcchHHHHHHHHHhCCCCceEEEeeccchHHHHHHHHHhhccCc
Confidence 4567788888899988766666531 1100 01123332222222 2455677777777888888887665
Q ss_pred cCC-eEEEEeeCCCccc-cCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEE-
Q 017943 88 ENI-VYLELRTTPKRNE-SIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLL- 164 (363)
Q Consensus 88 ~gV-~y~E~r~~p~~~~-~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~- 164 (363)
--| .|+ -+++.... .-+.+.+++++...++++-+++.- .+.+++-.
T Consensus 148 ~~Vh~~~--aTSd~~rey~~~kskeevi~~Ave~ikfvkslg-----------------------------~~~ieFSpE 196 (560)
T KOG2367|consen 148 PRVHVFI--ATSDIHREYKLKKSKEEVIESAVEVIKFVKSLG-----------------------------KWDIEFSPE 196 (560)
T ss_pred ceEEEEe--cccHHHHHHHhcccHHHHHHHHHHHHHHHHhcc-----------------------------cceEEECcc
Confidence 545 333 44433211 236788889988888887655411 02222222
Q ss_pred EeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-----cCCceeeecCCCCCh--hhHHHH
Q 017943 165 SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-----QGLQITLHCGEIPNK--EEIQSM 237 (363)
Q Consensus 165 ~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~-----~gl~~~~HagE~~~~--~~i~~~ 237 (363)
+..|+ ..+-+.+......+.... -|++...=....|..+-++.+.-+. ..+-+.+|+.-..+- .+....
T Consensus 197 d~~rs-e~~fl~eI~~aV~Kag~~---tvnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHND~G~a~Ant~~g 272 (560)
T KOG2367|consen 197 DFGRS-ELEFLLEILGAVIKAGVT---TVNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCISTHCHNDLGCATANTELG 272 (560)
T ss_pred ccccC-cHHHHHHHHHHHHHhCCc---cccCcceecccChHHHHHHHHHHHccCCCceeEEEEEeecCCccHHHHHHHHH
Confidence 12232 345566666666655322 2333321112457788888877665 256677777533332 122234
Q ss_pred HhcCCCeeeEe
Q 017943 238 LDFLPQRIGHA 248 (363)
Q Consensus 238 l~~g~~rigHg 248 (363)
+..|++||.-+
T Consensus 273 ~~AGA~~VE~~ 283 (560)
T KOG2367|consen 273 LLAGARQVEVT 283 (560)
T ss_pred hhcCcceEEEE
Confidence 45688887543
No 213
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=70.83 E-value=34 Score=33.39 Aligned_cols=99 Identities=8% Similarity=-0.052 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHH-HHHcC-CceeeecCCCCChhhHHHHHhcCCCee--
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKF-AREQG-LQITLHCGEIPNKEEIQSMLDFLPQRI-- 245 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~-A~~~g-l~~~~HagE~~~~~~i~~~l~~g~~ri-- 245 (363)
.+.+.+...++.|.+.+.+.|+.+.-....+ ...+.+..+... |++.. +|+.+|+.-..+.+.+..+++.|-+.+
T Consensus 24 ~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~-~g~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~~GFtSVMi 102 (347)
T TIGR01521 24 NNMEQMRAIMEAADKTDSPVILQASRGARSY-AGAPFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQLGFTSVMM 102 (347)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCcchhhh-CCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCCEEee
Confidence 4568888899999888877666654321121 234556666554 55664 999999988877888999999886654
Q ss_pred --eEe------cc------cCHHHHHHHhcCCCcEEEc
Q 017943 246 --GHA------CC------FEEEEWRKLKSSKIPVEIC 269 (363)
Q Consensus 246 --gHg------~~------~~~~~~~~l~~~~i~ve~c 269 (363)
.|. .- .+.+.+++....|+.||.-
T Consensus 103 DgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaE 140 (347)
T TIGR01521 103 DGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGE 140 (347)
T ss_pred cCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 232 11 1236788888899998743
No 214
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=70.75 E-value=35 Score=33.30 Aligned_cols=100 Identities=10% Similarity=-0.001 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHH-HHcC-CceeeecCCCCChhhHHHHHhcCCCee--
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFA-REQG-LQITLHCGEIPNKEEIQSMLDFLPQRI-- 245 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A-~~~g-l~~~~HagE~~~~~~i~~~l~~g~~ri-- 245 (363)
.+.+.+...++-|.+...+.|+.+.-....+ ...+.+..+...+ ++.. +|+.+|+.-..+.+.+..++++|-+.+
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~s~~~~~~-~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVMi 104 (347)
T PRK09196 26 NNLEQVQAIMEAADETDSPVILQASAGARKY-AGEPFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQLGFTSVMM 104 (347)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCccHhhh-CCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEe
Confidence 4568888889988888777666554321111 2345566666654 4554 999999988877788889999887664
Q ss_pred --eEe------------cccCHHHHHHHhcCCCcEEEcc
Q 017943 246 --GHA------------CCFEEEEWRKLKSSKIPVEICL 270 (363)
Q Consensus 246 --gHg------------~~~~~~~~~~l~~~~i~ve~cP 270 (363)
.|. +..+.+.+++....|+.||.-.
T Consensus 105 DgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaEL 143 (347)
T PRK09196 105 DGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGEL 143 (347)
T ss_pred cCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 233 0112467888888999997544
No 215
>PRK05451 dihydroorotase; Provisional
Probab=70.73 E-value=26 Score=33.97 Aligned_cols=138 Identities=13% Similarity=0.170 Sum_probs=73.6
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCCh------hh--HHHHH-----hc-CCC-eeeEecccCHHHHHHHhc--CCCc
Q 017943 203 EWTTFLPALKFAREQGLQITLHCGEIPNK------EE--IQSML-----DF-LPQ-RIGHACCFEEEEWRKLKS--SKIP 265 (363)
Q Consensus 203 ~~~~~~~~~~~A~~~gl~~~~HagE~~~~------~~--i~~~l-----~~-g~~-rigHg~~~~~~~~~~l~~--~~i~ 265 (363)
+...+.++++.+++.|+++.+|++..... +. +...+ .+ |+. -|.|.. +++.++.+++ .+|.
T Consensus 116 dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~~~~e~~~~~~~l~~lA~~~pg~~lhI~Hls--t~~~~e~i~~a~~~it 193 (345)
T PRK05451 116 DIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDIFDREAVFIDRVLEPLRRRFPKLKIVFEHIT--TKDAVDYVREANDNLA 193 (345)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCcccccccchHHHHHHHHHHHHHhcCCCcEEEEecC--cHHHHHHHHhcCCCEE
Confidence 34578899999999999999999752210 11 11111 22 432 244543 4555666554 3688
Q ss_pred EEEcccccccccc--cc--C----CC-CccHH---------HHHHcCCCE-EecCCCCCcc--------C-CChHH----
Q 017943 266 VEICLTSNIRTET--IS--S----LD-IHHFV---------DLYKAQHPL-VLCTDDSGVF--------S-TSVSR---- 313 (363)
Q Consensus 266 ve~cPtSN~~l~~--~~--~----~~-~~pi~---------~l~~~Gv~v-~l~TDd~~~~--------~-~~l~~---- 313 (363)
+|+||-- +.+.. +. + +. .+|+| +.+..|.-= +|+||-.... + .++..
T Consensus 194 ~Et~ph~-L~l~~~~~~~~~~~~~~k~~PPLR~~~d~~aLw~~l~~G~Id~~i~SDHaP~~~~~K~~~~G~~gi~~~~~g 272 (345)
T PRK05451 194 ATITPHH-LLINRNDMLVGGIRPHLYCLPILKRETHRQALREAATSGNPKFFLGTDSAPHARHAKESACGCAGIFSAPAA 272 (345)
T ss_pred EEecHHH-HhcCHHHHhCCCcCCCeEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChHHhCCCCCCCchhhHHHH
Confidence 8999951 21110 00 0 01 24543 345567544 7999964431 1 23332
Q ss_pred -H-HHHHHHHCCCCHHHHHHH-HHHHHHHcCCCh
Q 017943 314 -E-YDLAASAFSLGRREMFQL-AKSAVKFIFANG 344 (363)
Q Consensus 314 -E-~~~~~~~~~l~~~~l~~l-~~na~~~sf~~~ 344 (363)
+ +..+... +.+++++.++ +.|.++.-.+.+
T Consensus 273 ~~~~~~~~~~-~~~l~~~v~~~s~nPAkifGl~~ 305 (345)
T PRK05451 273 LELYAEVFEE-AGALDKLEAFASLNGPDFYGLPR 305 (345)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHhHHHHHHhCCCC
Confidence 1 1112222 3388886655 588888766643
No 216
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=70.58 E-value=98 Score=29.32 Aligned_cols=157 Identities=15% Similarity=0.125 Sum_probs=82.5
Q ss_pred eeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHH-HHHhcCCCe
Q 017943 166 IDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQ-SMLDFLPQR 244 (363)
Q Consensus 166 ~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~-~~l~~g~~r 244 (363)
.+...+++...+..+.|+.. ++|||+.++-.|..-|.+.+.-+.++.++ .-+.+-.| -+... .. +.--.
T Consensus 93 TNTyApvevLre~ye~aL~~--~~VVGLsIgTRPDClpd~VldlL~e~~~r--~~vWvELG----LQT~h~~T--lk~iN 162 (312)
T COG1242 93 TNTYAPVEVLREMYEQALSE--AGVVGLSIGTRPDCLPDDVLDLLAEYNKR--YEVWVELG----LQTAHDKT--LKRIN 162 (312)
T ss_pred ccccCcHHHHHHHHHHHhCc--CCeeEEeecCCCCCCcHHHHHHHHHHhhh--eEEEEEec----cchhhHHH--HHHHh
Confidence 34445677788888888865 46999998866664443334333444444 55555443 11111 11 11112
Q ss_pred eeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCcc------CCChHHHHHHH
Q 017943 245 IGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVF------STSVSREYDLA 318 (363)
Q Consensus 245 igHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~------~~~l~~E~~~~ 318 (363)
-||.+..-.+.+.+++++||.++.-... | .|+ ..+=.-|--+.+-..++.|+.-+. +|.|. +++..
T Consensus 163 RgHd~~~y~dav~r~rkrgIkvc~HiI~----G-LPg--E~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~-k~Y~~ 234 (312)
T COG1242 163 RGHDFACYVDAVKRLRKRGIKVCTHLIN----G-LPG--ETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPME-KMYEK 234 (312)
T ss_pred cccchHHHHHHHHHHHHcCCeEEEEEee----C-CCC--CCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHH-HHHHc
Confidence 3788877677888999999887643322 2 121 111111111112233444442221 34443 33333
Q ss_pred HHHCCCCHHHHHHHHHHHHHHc
Q 017943 319 ASAFSLGRREMFQLAKSAVKFI 340 (363)
Q Consensus 319 ~~~~~l~~~~l~~l~~na~~~s 340 (363)
.+.--+|.+|-..++.+.++..
T Consensus 235 G~l~~ls~eeYv~~~~d~le~l 256 (312)
T COG1242 235 GRLKFLSLEEYVELVCDQLEHL 256 (312)
T ss_pred CCceeccHHHHHHHHHHHHHhC
Confidence 3444577777777777777653
No 217
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=69.39 E-value=52 Score=34.27 Aligned_cols=129 Identities=19% Similarity=0.211 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCC
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDI 284 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~ 284 (363)
.......+.+++.|.++.=|+.-..+. .+...+..|+ +-.|=....+|.+++++ .|..+.+--.|-.+. + .
T Consensus 189 ~~~l~kl~a~~~~~k~VdGHapgl~g~-~Ln~Y~aaGi-~tDHE~~t~EEa~~klr-~Gm~i~iReGS~a~d-----l-~ 259 (584)
T COG1001 189 PDMLAKLEAARKAGKPVDGHAPGLSGK-ELNAYIAAGI-STDHESTTAEEALEKLR-LGMKIMIREGSAAKD-----L-A 259 (584)
T ss_pred HHHHHHHHHHHHcCCeecccCCCCChH-HHHHHHhcCC-CcCcccCCHHHHHHHHh-CCcEEEEEcCchhhh-----H-H
Confidence 345566777899999999999544332 2333333453 33665544456666664 677776544332110 0 0
Q ss_pred ccHHHHHHcC-CCEEecCCCCCcc----CCChHHHHHHHHHHCCCCHHHHHHH-HHHHHHHcCCC
Q 017943 285 HHFVDLYKAQ-HPLVLCTDDSGVF----STSVSREYDLAASAFSLGRREMFQL-AKSAVKFIFAN 343 (363)
Q Consensus 285 ~pi~~l~~~G-v~v~l~TDd~~~~----~~~l~~E~~~~~~~~~l~~~~l~~l-~~na~~~sf~~ 343 (363)
.-++.+-+.| -++++||||.... ...|-+-.+.+.+ .|+++-+.++| +.|++++--++
T Consensus 260 ~l~~~i~e~~~~~~~lcTDD~~p~dl~~eGhld~~vR~Ai~-~Gv~p~~a~qmAtiN~A~~~gl~ 323 (584)
T COG1001 260 ALLPAITELGSRRVMLCTDDRHPDDLLEEGHLDRLVRRAIE-EGVDPLDAYQMATINPAEHYGLD 323 (584)
T ss_pred HHHHHHhhcCCceEEEECCCCChhHhhhcCCHHHHHHHHHH-cCCCHHHHHHHHhcCHHHHcCCc
Confidence 1133344566 4699999996544 2566666666654 79999997666 58999887765
No 218
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=69.12 E-value=53 Score=31.93 Aligned_cols=186 Identities=13% Similarity=0.040 Sum_probs=115.2
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCC---------------hhhHHH-HHHHHHHcCCceeeecCCCC--Chh
Q 017943 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGE---------------WTTFLP-ALKFAREQGLQITLHCGEIP--NKE 232 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~---------------~~~~~~-~~~~A~~~gl~~~~HagE~~--~~~ 232 (363)
+.+.++..++-|.+.+.+.|+.+.-.|...... ...+.. +...|+++++|+.+|..-.. +.+
T Consensus 22 n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VPV~lHLDH~~~~~~e 101 (340)
T cd00453 22 GTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLP 101 (340)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCCEEEEcCCCCCCCHH
Confidence 457888888888888877777765422211111 233333 44567889999999998776 667
Q ss_pred hHHHHHhcCCC---------eeeEecccC-----------HHHHHHHhcCCCcEEEcccccccccccc-----------C
Q 017943 233 EIQSMLDFLPQ---------RIGHACCFE-----------EEEWRKLKSSKIPVEICLTSNIRTETIS-----------S 281 (363)
Q Consensus 233 ~i~~~l~~g~~---------rigHg~~~~-----------~~~~~~l~~~~i~ve~cPtSN~~l~~~~-----------~ 281 (363)
.+..+++.|.. =-.|.+..+ .+.+++....|+.||.-.-. +++.. .
T Consensus 102 ~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VEaElG~---igG~ed~~~~~~~~~~~ 178 (340)
T cd00453 102 WIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGC---TGGEEDGVDNSHMDASA 178 (340)
T ss_pred HHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEe---cCCccCCcccccccccc
Confidence 78889988821 112222211 25678888899999754321 11111 1
Q ss_pred CCCcc--HHHHHH-cC----C---CEEecCCCC------CccCCChHHHHHHHHH--------H--------CCCCHHHH
Q 017943 282 LDIHH--FVDLYK-AQ----H---PLVLCTDDS------GVFSTSVSREYDLAAS--------A--------FSLGRREM 329 (363)
Q Consensus 282 ~~~~p--i~~l~~-~G----v---~v~l~TDd~------~~~~~~l~~E~~~~~~--------~--------~~l~~~~l 329 (363)
+-+.| ..++.+ -| + -+++||==. .-.+.++..+...... . -|++.+++
T Consensus 179 ~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~~~~~~~gl~~~~~pLVlHGgSG~~~e~~ 258 (340)
T cd00453 179 LYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEI 258 (340)
T ss_pred cCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHHHHHhhcccCCCCCceEEeCCCCCCHHHH
Confidence 11234 456664 45 2 377776421 1234567778777662 1 25677889
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 017943 330 FQLAKSAVKFIFANGRVKEDLKEIFDLAEK 359 (363)
Q Consensus 330 ~~l~~na~~~sf~~~~~K~~l~~~~~~~~~ 359 (363)
.++..+++.-.=++-+.+....+.+.++.+
T Consensus 259 ~~ai~~Gi~KiNi~Te~~~A~~~~~~~~~~ 288 (340)
T cd00453 259 KDSVSYGVVKMNIDTDTQWATWEGVLNYYK 288 (340)
T ss_pred HHHHHcCCeEEEcccHHHHHHHHHHHHHHH
Confidence 999999988888888877777777666653
No 219
>PRK10307 putative glycosyl transferase; Provisional
Probab=68.83 E-value=1.1e+02 Score=30.02 Aligned_cols=93 Identities=12% Similarity=0.130 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHHHc-CCceeeecCCCCChhhHHHHHh-cCCCeee-EecccCHHHHHHHhcCCCcEEEcccccccccccc
Q 017943 204 WTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLD-FLPQRIG-HACCFEEEEWRKLKSSKIPVEICLTSNIRTETIS 280 (363)
Q Consensus 204 ~~~~~~~~~~A~~~-gl~~~~HagE~~~~~~i~~~l~-~g~~rig-Hg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~ 280 (363)
.+.+.+++...++. ++++.+ +|+....+.+.+... .+.+++- +|..-.++..++++..++.+ +|+.+-..+.
T Consensus 244 ~~~li~a~~~l~~~~~~~l~i-vG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi~v--~ps~~e~~~~-- 318 (412)
T PRK10307 244 LELVIDAARRLRDRPDLIFVI-CGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADCHL--LPQKAGAADL-- 318 (412)
T ss_pred HHHHHHHHHHhccCCCeEEEE-ECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCEeE--EeeccCcccc--
Confidence 34455555544332 344443 565443444554333 4555432 44332356677888888875 3543321111
Q ss_pred CCCCcc--HHHHHHcCCCEEecCCCCC
Q 017943 281 SLDIHH--FVDLYKAQHPLVLCTDDSG 305 (363)
Q Consensus 281 ~~~~~p--i~~l~~~Gv~v~l~TDd~~ 305 (363)
.-| +-+++..|+|| |+||.++
T Consensus 319 ---~~p~kl~eama~G~PV-i~s~~~g 341 (412)
T PRK10307 319 ---VLPSKLTNMLASGRNV-VATAEPG 341 (412)
T ss_pred ---cCcHHHHHHHHcCCCE-EEEeCCC
Confidence 124 56789999998 6666554
No 220
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=68.38 E-value=42 Score=30.72 Aligned_cols=144 Identities=14% Similarity=0.198 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHHcCCceeeec-CCCCChhhHHHHHh-cCC-Ceee-EecccCHHHHHHHhcCCCcEEEccccccccccc
Q 017943 204 WTTFLPALKFAREQGLQITLHC-GEIPNKEEIQSMLD-FLP-QRIG-HACCFEEEEWRKLKSSKIPVEICLTSNIRTETI 279 (363)
Q Consensus 204 ~~~~~~~~~~A~~~gl~~~~Ha-gE~~~~~~i~~~l~-~g~-~rig-Hg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~ 279 (363)
.+.+.+++....+.+-.+.++. |.....+.....+. ++. +++- +|. .++..++++...+. ++|+..-
T Consensus 204 ~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~~d~~--i~ps~~e----- 274 (353)
T cd03811 204 FDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGF--QSNPYPYLKAADLF--VLSSRYE----- 274 (353)
T ss_pred hHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecc--cCCHHHHHHhCCEE--EeCcccC-----
Confidence 3556666666655433344443 43333333333333 443 3332 333 34566777776654 4675431
Q ss_pred cCCCCccHHHHHHcCCCEEecCCCCCccCCChHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCChHHHHHHHH-HHHHHH
Q 017943 280 SSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKE-IFDLAE 358 (363)
Q Consensus 280 ~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~-~~~~~~ 358 (363)
++ ...+-+.+..|+|| |+||.++.. .+..+.....-.-.-+.+++. -..+.+.....+++.++++.+ ..+.+.
T Consensus 275 -~~-~~~~~Ea~~~G~Pv-I~~~~~~~~--e~i~~~~~g~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 348 (353)
T cd03811 275 -GF-PNVLLEAMALGTPV-VATDCPGPR--EILEDGENGLLVPVGDEAALA-AAALALLDLLLDPELRERLAAAARERVA 348 (353)
T ss_pred -CC-CcHHHHHHHhCCCE-EEcCCCChH--HHhcCCCceEEECCCCHHHHH-HHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 11 24678999999986 567776331 111111100000011223333 335566777677777777776 777777
Q ss_pred hhcC
Q 017943 359 KKLD 362 (363)
Q Consensus 359 ~~~~ 362 (363)
++|+
T Consensus 349 ~~~~ 352 (353)
T cd03811 349 REYS 352 (353)
T ss_pred HHhc
Confidence 7764
No 221
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=67.65 E-value=1.1e+02 Score=29.49 Aligned_cols=149 Identities=15% Similarity=0.227 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccccc
Q 017943 70 DHATVTRITQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDA 149 (363)
Q Consensus 70 ~~e~~~~~~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (363)
+.+.++...+.-++-+.+.||-.+=+=+=|.. .-.+++++.+++..
T Consensus 142 ~~~el~~~~k~qle~~~~~gvD~L~fETip~~---------~EA~a~l~~l~~~~------------------------- 187 (317)
T KOG1579|consen 142 EFEELYDFFKQQLEVFLEAGVDLLAFETIPNV---------AEAKAALELLQELG------------------------- 187 (317)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeecCCH---------HHHHHHHHHHHhcC-------------------------
Confidence 56678888888899999999855433333332 12566677776531
Q ss_pred ccCCCCCCcEEEEEEEeeCC---CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcC--Cceeee
Q 017943 150 CNGTRGKKIYVRLLLSIDRR---ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQG--LQITLH 224 (363)
Q Consensus 150 ~~~~~~~gi~~~li~~~~r~---~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~g--l~~~~H 224 (363)
..+.+-+-+++..+ .+.+...+.+..+.+ ...+.|+++-..........+..+- ++-.+ +-+..-
T Consensus 188 ------~~~p~~is~t~~d~g~l~~G~t~e~~~~~~~~--~~~~~~IGvNC~~~~~~~~~~~~L~--~~~~~~~llvYPN 257 (317)
T KOG1579|consen 188 ------PSKPFWISFTIKDEGRLRSGETGEEAAQLLKD--GINLLGIGVNCVSPNFVEPLLKELM--AKLTKIPLLVYPN 257 (317)
T ss_pred ------CCCcEEEEEEecCCCcccCCCcHHHHHHHhcc--CCceEEEEeccCCchhccHHHHHHh--hccCCCeEEEecC
Confidence 11222223333221 111222333332211 1137777776544333334444444 22222 333344
Q ss_pred cCCCCCh----------------hhHHHHHhcCCCeeeEecccCHHHHHHHhcC
Q 017943 225 CGEIPNK----------------EEIQSMLDFLPQRIGHACCFEEEEWRKLKSS 262 (363)
Q Consensus 225 agE~~~~----------------~~i~~~l~~g~~rigHg~~~~~~~~~~l~~~ 262 (363)
.||..+. ..+..+.++|+.-||-|+..+|..++.++++
T Consensus 258 sGe~yd~~~g~~~~~~~~~~~~~~~~~~~~~lGv~iIGGCCrt~P~~I~aI~e~ 311 (317)
T KOG1579|consen 258 SGEVYDNEKGGWIPTPFGLEPWQTYVKKAIDLGVRIIGGCCRTTPKHIRAIAEA 311 (317)
T ss_pred CCCCCccccCcccCCCcccchHHHHHHHHHhcccceeCcccCCChHHHHHHHHH
Confidence 5654421 1123566789999999999999888887653
No 222
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=67.02 E-value=1.1e+02 Score=28.30 Aligned_cols=114 Identities=14% Similarity=0.073 Sum_probs=61.0
Q ss_pred CceEEEecCCC--CCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHH-hcCCC-eeeEecccC----------H
Q 017943 188 LGVVGIDLSGN--PTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSML-DFLPQ-RIGHACCFE----------E 253 (363)
Q Consensus 188 ~~vvGidl~g~--e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l-~~g~~-rigHg~~~~----------~ 253 (363)
.++.|+-+... .. .+.+.+.+.++.+.++|+++.+|++... ...+...+ .++.. -++|+-... .
T Consensus 92 ~g~rGvRl~~~~~~~-~~~~~~~~~~~~~~~~gl~v~~~~~~~~-l~~l~~l~~~~~l~ivldH~G~p~~~~~~~~~~~~ 169 (263)
T cd01311 92 AGVRGVRFNFLFGGV-DNKDELDEIAKRAAELGWHVQVYFDAVD-LPALLPFLQKLPVAVVIDHFGRPDVTKGVDGAEFA 169 (263)
T ss_pred CCCeEEEEecccCCC-CCHHHHHHHHHHHHHcCCEEEEEeCHhh-HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHhHH
Confidence 47889875421 12 2445678899999999999999997422 12233333 25322 367853221 2
Q ss_pred HHHHHHhcCCCcEEEccccccccccccCCC---Ccc-HHHHHHcCC-CEEecCCCCCc
Q 017943 254 EEWRKLKSSKIPVEICLTSNIRTETISSLD---IHH-FVDLYKAQH-PLVLCTDDSGV 306 (363)
Q Consensus 254 ~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~---~~p-i~~l~~~Gv-~v~l~TDd~~~ 306 (363)
+.++.++..++.+-++-. ....-.... ..| +..+.+.|- ++..|||-|..
T Consensus 170 ~~l~~l~~pNV~~k~Sg~---~~~~~~~~~~~~~~~~~~~~~~~g~dRlmfGSD~P~~ 224 (263)
T cd01311 170 ALLKLIEEGNVWVKVSGP---YRLSVKQEAYADVIAFARQIVAAAPDRLVWGTDWPHP 224 (263)
T ss_pred HHHHHHhcCCEEEEecch---hhcCCCCCCHHHHHHHHHHHHHhCCCcEEEeCCCCCC
Confidence 445555444555544332 110000111 112 233444553 68899999875
No 223
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=66.89 E-value=46 Score=32.51 Aligned_cols=189 Identities=10% Similarity=0.018 Sum_probs=110.4
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHH-HHHc-CCceeeecCCCCChhhHHHHHhcCCCee--
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKF-AREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRI-- 245 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~-A~~~-gl~~~~HagE~~~~~~i~~~l~~g~~ri-- 245 (363)
.+.+.+...++-|.+.+.+.|+.+.-....+ ...+.+..+... |++. ++|+.+|+.-..+.+.+..+++.|-+.+
T Consensus 26 ~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~-~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~~GFtSVMi 104 (347)
T PRK13399 26 NNMEQILAIMEAAEATDSPVILQASRGARKY-AGDAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIRSGFTSVMM 104 (347)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCcchhhh-CCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHhcCCCEEEE
Confidence 4568888899999888877666654321122 234556666654 4556 4999999988777788899999886653
Q ss_pred --eEec------cc------CHHHHHHHhcCCCcEEEcccc---ccc------cccc-------cCCCCcc--HHHHHH-
Q 017943 246 --GHAC------CF------EEEEWRKLKSSKIPVEICLTS---NIR------TETI-------SSLDIHH--FVDLYK- 292 (363)
Q Consensus 246 --gHg~------~~------~~~~~~~l~~~~i~ve~cPtS---N~~------l~~~-------~~~~~~p--i~~l~~- 292 (363)
.|.- -+ +.+.+++....|+.||.-.-. +-. -+.. ..+-..| ..+|.+
T Consensus 105 DgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~ 184 (347)
T PRK13399 105 DGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQR 184 (347)
T ss_pred eCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccccccccccCCCHHHHHHHHHH
Confidence 2321 11 235788888899999754421 000 0000 0011223 334443
Q ss_pred cCC---CEEecCCCCCc----------cCCChHHHHHHHHH-----------------------------HCCCCHHHHH
Q 017943 293 AQH---PLVLCTDDSGV----------FSTSVSREYDLAAS-----------------------------AFSLGRREMF 330 (363)
Q Consensus 293 ~Gv---~v~l~TDd~~~----------~~~~l~~E~~~~~~-----------------------------~~~l~~~~l~ 330 (363)
-|| -|++||==..+ .+.++..|++.... ..|++.++++
T Consensus 185 TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~ 264 (347)
T PRK13399 185 TGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQ 264 (347)
T ss_pred HCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHH
Confidence 244 23444431111 12234444444331 1134478888
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 017943 331 QLAKSAVKFIFANGRVKEDLKEIFDLAEK 359 (363)
Q Consensus 331 ~l~~na~~~sf~~~~~K~~l~~~~~~~~~ 359 (363)
++..+++.-.=++-+.|..+.+.+.++.+
T Consensus 265 kai~~GI~KINi~Tdl~~a~~~~~~~~~~ 293 (347)
T PRK13399 265 RGIKHGVRKVNIDTDIRLAMTGAIRKVLA 293 (347)
T ss_pred HHHHCCCeEEEeChHHHHHHHHHHHHHHH
Confidence 88888888888888888887777777654
No 224
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=66.28 E-value=32 Score=32.70 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCC--eEEEEeeCCCccccCCCCHHHHHHHHHHHHHh
Q 017943 70 DHATVTRITQEVVEDFASENI--VYLELRTTPKRNESIGMSKRSYMDAVVEGLRA 122 (363)
Q Consensus 70 ~~e~~~~~~~~~~~~~~~~gV--~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~ 122 (363)
+.+.++..-++.++-+...|| ..+|++.+... +.++++++++
T Consensus 129 ~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E-----------~~aa~~a~~~ 172 (305)
T PF02574_consen 129 SFEELRDFHREQAEALADAGVDLLLFETMPSLAE-----------AKAALEAIKE 172 (305)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-CSC-----------HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCCEEEEecCcHHHH-----------HHHHHHHHHh
Confidence 567888888888898999898 78898887542 4566666766
No 225
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=65.95 E-value=16 Score=35.68 Aligned_cols=90 Identities=11% Similarity=0.042 Sum_probs=50.8
Q ss_pred HHHHHHHhcC--CCcEEEccccccccc--cccCC-----CCccHHH---------HHHcCCCEEecCCC-CC--------
Q 017943 253 EEEWRKLKSS--KIPVEICLTSNIRTE--TISSL-----DIHHFVD---------LYKAQHPLVLCTDD-SG-------- 305 (363)
Q Consensus 253 ~~~~~~l~~~--~i~ve~cPtSN~~l~--~~~~~-----~~~pi~~---------l~~~Gv~v~l~TDd-~~-------- 305 (363)
.+.++++++. +|..++||.. +.+. .+..+ -.+|++. .++.|...+|+||- |-
T Consensus 182 ~~~~~~i~~~k~~vt~ev~ph~-L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~i~SDh~P~~~~~k~~~ 260 (361)
T cd01318 182 PEELKLIKKAKPGVTVEVTPHH-LFLDVEDYDRLGTLGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEKRKG 260 (361)
T ss_pred HHHHHHHHHhCCCeEEEeCHHH-hhcCHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhCCCCCEEeeCCCCCCHHHccCC
Confidence 4556666655 7888888872 1111 00000 1245444 38899999999993 32
Q ss_pred ----ccC-CChHH---HHHHHHHHCCCCHHHHH-HHHHHHHHHcCCC
Q 017943 306 ----VFS-TSVSR---EYDLAASAFSLGRREMF-QLAKSAVKFIFAN 343 (363)
Q Consensus 306 ----~~~-~~l~~---E~~~~~~~~~l~~~~l~-~l~~na~~~sf~~ 343 (363)
.++ .++-. -+..+....+++++++. .++.|+++...++
T Consensus 261 ~~~a~~G~~g~e~~l~~~~~~v~~~~l~l~~a~~~~t~nPA~~lgl~ 307 (361)
T cd01318 261 YPAAPSGIPGVETALPLMLTLVNKGILSLSRVVRLTSHNPARIFGIK 307 (361)
T ss_pred hhhCCCCCccHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCC
Confidence 112 11111 11223344579999965 4678999887764
No 226
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=65.74 E-value=1.2e+02 Score=28.56 Aligned_cols=134 Identities=13% Similarity=0.066 Sum_probs=74.0
Q ss_pred HHHHhcCCeEEEEeeCCCc-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcE
Q 017943 83 EDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIY 159 (363)
Q Consensus 83 ~~~~~~gV~y~E~r~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 159 (363)
+.+.+-|+..+-+.++.+. + ..-+.+.++.++.+.+.++.+++ .|++
T Consensus 81 e~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~------------------------------~g~~ 130 (279)
T cd07947 81 KLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALD------------------------------HGIK 130 (279)
T ss_pred HHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHH------------------------------CCCe
Confidence 4455568877777665432 2 23478888999888888877642 3555
Q ss_pred EEEEEE-eeCCCCH----HHHHHHHHHHHhhCCCceEE-EecCCC--CC--CCChhhHHHHHHHHHHc-CC---ceeeec
Q 017943 160 VRLLLS-IDRRETT----EAAMETVKLALEMRDLGVVG-IDLSGN--PT--KGEWTTFLPALKFAREQ-GL---QITLHC 225 (363)
Q Consensus 160 ~~li~~-~~r~~~~----e~~~~~~~~a~~~~~~~vvG-idl~g~--e~--~~~~~~~~~~~~~A~~~-gl---~~~~Ha 225 (363)
+++.+. ..|.... +.+.+.++.+.+...+..+. -|..|- |. ..-|+....++...++. ++ ++.+|+
T Consensus 131 v~~~~ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~ 210 (279)
T cd07947 131 PRCHLEDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHG 210 (279)
T ss_pred EEEEEEcccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 555542 3332111 23445555544342221222 244452 21 11246677777776553 43 477777
Q ss_pred CCCCCh--hhHHHHHhcCCCeee
Q 017943 226 GEIPNK--EEIQSMLDFLPQRIG 246 (363)
Q Consensus 226 gE~~~~--~~i~~~l~~g~~rig 246 (363)
.-+.+- .+...+++.|++++.
T Consensus 211 Hn~~Gla~AN~laA~~aG~~~vd 233 (279)
T cd07947 211 HNDFYKAVANAVAAWLYGASWVN 233 (279)
T ss_pred cCCCChHHHHHHHHHHhCCCEEE
Confidence 654443 456677888988864
No 227
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=65.51 E-value=78 Score=30.67 Aligned_cols=23 Identities=4% Similarity=0.040 Sum_probs=17.0
Q ss_pred CChhhHHHHHHHHHHcCCceeee
Q 017943 202 GEWTTFLPALKFAREQGLQITLH 224 (363)
Q Consensus 202 ~~~~~~~~~~~~A~~~gl~~~~H 224 (363)
.+.+.+..+++.|++.|+.+..=
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~st 95 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLST 95 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEE
Confidence 35677888888888888877653
No 228
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=65.48 E-value=1.7e+02 Score=30.26 Aligned_cols=131 Identities=8% Similarity=-0.011 Sum_probs=79.5
Q ss_pred HHHHHhcCCeEEEEeeCCCc-c--ccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc
Q 017943 82 VEDFASENIVYLELRTTPKR-N--ESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI 158 (363)
Q Consensus 82 ~~~~~~~gV~y~E~r~~p~~-~--~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 158 (363)
++.+..-|+..+-+..+-.. | ..-+.+.++.++.+.+.++.+++ .|.
T Consensus 87 ~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~------------------------------~g~ 136 (526)
T TIGR00977 87 LQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKR------------------------------QGD 136 (526)
T ss_pred HHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH------------------------------cCC
Confidence 44445556665555444221 2 12467889999988888887653 344
Q ss_pred EEEEEEE----eeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-C-CceeeecCCCCCh-
Q 017943 159 YVRLLLS----IDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-G-LQITLHCGEIPNK- 231 (363)
Q Consensus 159 ~~~li~~----~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~-g-l~~~~HagE~~~~- 231 (363)
.+.+... ..| .+++-+.+.++.+.+...+.+.=.|..| ...|..+..+++..++. + .++.+|+.=..+-
T Consensus 137 ~V~~~~e~f~D~~r-~~~~~l~~~~~~a~~aGad~i~i~DTvG---~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlA 212 (526)
T TIGR00977 137 EVIYDAEHFFDGYK-ANPEYALATLATAQQAGADWLVLCDTNG---GTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTA 212 (526)
T ss_pred eEEEEeeeeeeccc-CCHHHHHHHHHHHHhCCCCeEEEecCCC---CcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChH
Confidence 4443322 124 4678888888888776544444446555 24577888888877654 3 3477787544432
Q ss_pred -hhHHHHHhcCCCeee
Q 017943 232 -EEIQSMLDFLPQRIG 246 (363)
Q Consensus 232 -~~i~~~l~~g~~rig 246 (363)
.+...+++.|++++.
T Consensus 213 vANslaAv~AGA~~Vd 228 (526)
T TIGR00977 213 VANSLLAVEAGATMVQ 228 (526)
T ss_pred HHHHHHHHHhCCCEEE
Confidence 345567778988853
No 229
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=65.36 E-value=46 Score=30.91 Aligned_cols=114 Identities=14% Similarity=0.097 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhCCCceEEEecCC--CCCCCChhhHHHHHHHHHHcCCceeeecCC--CCCh-hhHHHHHhcCCCee-
Q 017943 172 TEAAMETVKLALEMRDLGVVGIDLSG--NPTKGEWTTFLPALKFAREQGLQITLHCGE--IPNK-EEIQSMLDFLPQRI- 245 (363)
Q Consensus 172 ~e~~~~~~~~a~~~~~~~vvGidl~g--~e~~~~~~~~~~~~~~A~~~gl~~~~HagE--~~~~-~~i~~~l~~g~~ri- 245 (363)
.++...+.+....++.-++.||-+.. .+...+.+..+.+.+.|. ++++|+|-+- ..++ +.+..++++|.+||
T Consensus 69 ~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~--~~~vTFHRAfD~~~d~~~al~~l~~lG~~rIL 146 (248)
T PRK11572 69 DGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAG--PLAVTFHRAFDMCANPLNALKQLADLGVARIL 146 (248)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhc--CCceEEechhhccCCHHHHHHHHHHcCCCEEE
Confidence 44554454444434333444443321 222345667788888774 8999999763 3333 23455667899985
Q ss_pred eEecccC----HHHHHHHhc-CCCcEEEccccccccccccCCCCccHHHHHHcCCC
Q 017943 246 GHACCFE----EEEWRKLKS-SKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP 296 (363)
Q Consensus 246 gHg~~~~----~~~~~~l~~-~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~ 296 (363)
-||-..+ -+.++.|.+ .+ ...+.|-+-+ ..+.+.++...|++
T Consensus 147 TSGg~~~a~~g~~~L~~lv~~a~-~~~Im~GgGV--------~~~Nv~~l~~tG~~ 193 (248)
T PRK11572 147 TSGQQQDAEQGLSLIMELIAASD-GPIIMAGAGV--------RLSNLHKFLDAGVR 193 (248)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcC-CCEEEeCCCC--------CHHHHHHHHHcCCC
Confidence 4554322 133444433 23 2236665422 33556667677775
No 230
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=64.82 E-value=24 Score=34.36 Aligned_cols=190 Identities=11% Similarity=-0.008 Sum_probs=112.9
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCC--hhh------------H-HHHHHHHHHcCCceeeecCCCCC--hh
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGE--WTT------------F-LPALKFAREQGLQITLHCGEIPN--KE 232 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~--~~~------------~-~~~~~~A~~~gl~~~~HagE~~~--~~ 232 (363)
...+.+...++-|.+.+.+.|+++.-....+... .+. + .-+...|++.++|+.+|+.-..+ .+
T Consensus 29 ~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~~~ 108 (350)
T PRK09197 29 VGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVILHTDHCAKKLLP 108 (350)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcchH
Confidence 3568888999999988887777664321111110 111 2 23445678889999999987766 45
Q ss_pred hHHHHHhcCCCeee----Eec--------cc--------CHHHHHHHhcCCCcEEEcccccc--cccc---cc---CCCC
Q 017943 233 EIQSMLDFLPQRIG----HAC--------CF--------EEEEWRKLKSSKIPVEICLTSNI--RTET---IS---SLDI 284 (363)
Q Consensus 233 ~i~~~l~~g~~rig----Hg~--------~~--------~~~~~~~l~~~~i~ve~cPtSN~--~l~~---~~---~~~~ 284 (363)
.+..+++.|.+.+- +|+ .+ +.+.+++....|++||.-+-.=- --+. .. ..-+
T Consensus 109 ~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~T 188 (350)
T PRK09197 109 WIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLEIELGVTGGEEDGVDNSHEDNSKLYT 188 (350)
T ss_pred HHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCCcCCccccccccccccC
Confidence 56777776622111 111 11 12567888889999985443200 0000 00 1123
Q ss_pred cc--HHHHHHc-CC-------CEEecCCCCCc------cCCChHHHHHHHHH----------------HCCCCHHHHHHH
Q 017943 285 HH--FVDLYKA-QH-------PLVLCTDDSGV------FSTSVSREYDLAAS----------------AFSLGRREMFQL 332 (363)
Q Consensus 285 ~p--i~~l~~~-Gv-------~v~l~TDd~~~------~~~~l~~E~~~~~~----------------~~~l~~~~l~~l 332 (363)
.| ..+|.+. |+ -|++||=-..+ .+.++..+.+.... .-|++.++++++
T Consensus 189 dPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~~a 268 (350)
T PRK09197 189 QPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIREA 268 (350)
T ss_pred CHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHHHH
Confidence 44 4566653 64 46777653222 23456666666651 126788899999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHh
Q 017943 333 AKSAVKFIFANGRVKEDLKEIFDLAEK 359 (363)
Q Consensus 333 ~~na~~~sf~~~~~K~~l~~~~~~~~~ 359 (363)
..+++.-.=++-+.+....+.+.++..
T Consensus 269 i~~GI~KINi~T~l~~a~~~~~~~~~~ 295 (350)
T PRK09197 269 VSYGVVKMNIDTDTQWAFWRGVLDYYF 295 (350)
T ss_pred HHCCCeeEEeCcHHHHHHHHHHHHHHH
Confidence 999998888888888877777777654
No 231
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=64.51 E-value=92 Score=32.05 Aligned_cols=108 Identities=13% Similarity=0.012 Sum_probs=68.5
Q ss_pred EEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCceeeecCCCCChhhHHHH
Q 017943 159 YVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSM 237 (363)
Q Consensus 159 ~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~-gl~~~~HagE~~~~~~i~~~ 237 (363)
.++++.-+.-.... .+.++.+.++...|-.-||+.+......++.+.++++.+++. ++++.+-. .+++.+..+
T Consensus 151 ~~~v~aEI~~a~~l---~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~~~pISIDT---~~~~v~eaA 224 (499)
T TIGR00284 151 PLRVVAEIPPTVAE---DGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDALDSPVIADT---PTLDELYEA 224 (499)
T ss_pred CeEEEEEEcCCcch---HHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhCCCcEEEeC---CCHHHHHHH
Confidence 35555555432222 445666666655555567776544322345588888888776 78887754 566778888
Q ss_pred HhcCCCeeeEeccc-CHHHHHHHhcCCCcEEEcccc
Q 017943 238 LDFLPQRIGHACCF-EEEEWRKLKSSKIPVEICLTS 272 (363)
Q Consensus 238 l~~g~~rigHg~~~-~~~~~~~l~~~~i~ve~cPtS 272 (363)
++.|++-|--.... .++..+.+++.|.++++.|+.
T Consensus 225 L~aGAdiINsVs~~~~d~~~~l~a~~g~~vVlm~~~ 260 (499)
T TIGR00284 225 LKAGASGVIMPDVENAVELASEKKLPEDAFVVVPGN 260 (499)
T ss_pred HHcCCCEEEECCccchhHHHHHHHHcCCeEEEEcCC
Confidence 88888765432222 245677788889999999863
No 232
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=64.05 E-value=1.2e+02 Score=29.88 Aligned_cols=94 Identities=14% Similarity=0.192 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHcC--Ccee-eecCCCCChhhHHHHH-hcCC-Ceee-EecccCHHHHHHHhcCCCcEEEcccccccccc
Q 017943 205 TTFLPALKFAREQG--LQIT-LHCGEIPNKEEIQSML-DFLP-QRIG-HACCFEEEEWRKLKSSKIPVEICLTSNIRTET 278 (363)
Q Consensus 205 ~~~~~~~~~A~~~g--l~~~-~HagE~~~~~~i~~~l-~~g~-~rig-Hg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~ 278 (363)
+.+.+++...++.+ +.+. .|+|.....+.+.+.+ ..+. +++- .|..-.++..+.++...+.+-+.|+..--++
T Consensus 246 ~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p- 324 (407)
T cd04946 246 DLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLP- 324 (407)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCcccccc-
Confidence 44555555544433 4443 5677644334444443 2333 3432 3443345677788887887777776532211
Q ss_pred ccCCCCccHHHHHHcCCCEEecCCCCCc
Q 017943 279 ISSLDIHHFVDLYKAQHPLVLCTDDSGV 306 (363)
Q Consensus 279 ~~~~~~~pi~~l~~~Gv~v~l~TDd~~~ 306 (363)
-.+-+.+..|+|| |+||.++.
T Consensus 325 ------~~llEAma~G~PV-Ias~vgg~ 345 (407)
T cd04946 325 ------VSIMEAMSFGIPV-IATNVGGT 345 (407)
T ss_pred ------HHHHHHHHcCCCE-EeCCCCCc
Confidence 3467889999988 77886554
No 233
>PRK08508 biotin synthase; Provisional
Probab=64.00 E-value=83 Score=29.53 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecC--CCC-CCCChhhHHHHHHHHHHcCCceeeecCCCC-ChhhHHHHHhcCCCee
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLS--GNP-TKGEWTTFLPALKFAREQGLQITLHCGEIP-NKEEIQSMLDFLPQRI 245 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~--g~e-~~~~~~~~~~~~~~A~~~gl~~~~HagE~~-~~~~i~~~l~~g~~ri 245 (363)
.++++..+.++.+.+. ++..|.+. |.. .....+.+.++++..++.+..+.+|+.-.. .++.+....+.|++++
T Consensus 40 ~s~eeI~~~a~~a~~~---g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~ 116 (279)
T PRK08508 40 KDIEQIVQEAKMAKAN---GALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSY 116 (279)
T ss_pred CCHHHHHHHHHHHHHC---CCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEE
Confidence 4677777777666554 44455543 211 112346677888888887766777763222 2344444446899999
Q ss_pred eEeccc
Q 017943 246 GHACCF 251 (363)
Q Consensus 246 gHg~~~ 251 (363)
.|+...
T Consensus 117 ~~~lEt 122 (279)
T PRK08508 117 NHNLET 122 (279)
T ss_pred cccccc
Confidence 988543
No 234
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=63.74 E-value=29 Score=31.32 Aligned_cols=66 Identities=15% Similarity=-0.004 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHH
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQ 235 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~ 235 (363)
.++++..+.+.....+...+--|+-++|.|....++-..++++.+++.|+++.++..-..+.+.+.
T Consensus 19 ~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~ 84 (213)
T PRK10076 19 ITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLL 84 (213)
T ss_pred cCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHH
Confidence 456665555444433322112377888888776777678999999999999998875433333333
No 235
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=63.33 E-value=82 Score=31.44 Aligned_cols=77 Identities=17% Similarity=0.169 Sum_probs=48.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCC-----ChhhHHHHHhcCC
Q 017943 168 RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIP-----NKEEIQSMLDFLP 242 (363)
Q Consensus 168 r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~-----~~~~i~~~l~~g~ 242 (363)
+..+++++.+.+...+.+......|+.+.|.+.......+.++++.+++.|+++.+ +.+. +++.+.....+|.
T Consensus 52 ~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI--~~TnG~~l~~~e~~~~L~~~gl 129 (404)
T TIGR03278 52 DFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHL--GYTSGKGFDDPEIAEFLIDNGV 129 (404)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEE--eCCCCcccCCHHHHHHHHHcCC
Confidence 34567788888777776543234566666654433446788999999999988654 2122 2344455556777
Q ss_pred Ceee
Q 017943 243 QRIG 246 (363)
Q Consensus 243 ~rig 246 (363)
+.+-
T Consensus 130 d~v~ 133 (404)
T TIGR03278 130 REVS 133 (404)
T ss_pred CEEE
Confidence 7763
No 236
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=63.14 E-value=1.4e+02 Score=28.32 Aligned_cols=139 Identities=14% Similarity=0.142 Sum_probs=72.3
Q ss_pred ceEEEecCCC--CCCCChhhHHHHHHHHHHcCCceeeecCCCCCh----------hhHHHHHh-cC--CCeeeEec--c-
Q 017943 189 GVVGIDLSGN--PTKGEWTTFLPALKFAREQGLQITLHCGEIPNK----------EEIQSMLD-FL--PQRIGHAC--C- 250 (363)
Q Consensus 189 ~vvGidl~g~--e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~----------~~i~~~l~-~g--~~rigHg~--~- 250 (363)
+++|+-+.+. ........+.++++.|+++|+++.+|.|-+... -.+.++.. +. .--++|+= .
T Consensus 126 gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~fP~l~IVl~H~G~~~p 205 (293)
T COG2159 126 GFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKFPELKIVLGHMGEDYP 205 (293)
T ss_pred CceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccCCCCchHHHHHHHHCCCCcEEEEecCCCCc
Confidence 6899988643 111233457899999999999999999875532 12233332 32 23478973 2
Q ss_pred c-CHHHHHHHhcCCCcEEEccccccccccccCCCCccH-HHHHH-cCCCEEecCCCCCccCCChHHHHHHHHHHCCCCHH
Q 017943 251 F-EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHF-VDLYK-AQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRR 327 (363)
Q Consensus 251 ~-~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi-~~l~~-~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~~~l~~~ 327 (363)
. .+.....-...++.++.+-..-. +...++ ..+.+ -.-+|..|||-|..... ...... ...+++.+
T Consensus 206 ~~~~a~~~a~~~~nvy~d~s~~~~~-------~~~~~~~~~~~~~~~dkilFGSD~P~~~~~---~~l~~~-~~l~l~~e 274 (293)
T COG2159 206 WELEAIELAYAHPNVYLDTSGVRPK-------YFAPPLLEFLKELGPDKILFGSDYPAIHPE---VWLAEL-DELGLSEE 274 (293)
T ss_pred hhHHHHHHHHhCCCceeeeeccccc-------cCChHHHHHHHhcccCeEEecCCCCCcCHH---HHHHHH-HhcCCCHH
Confidence 2 22222223333454443222100 011123 34444 22369999997765532 222222 23577776
Q ss_pred HHHHHH-HHHHH
Q 017943 328 EMFQLA-KSAVK 338 (363)
Q Consensus 328 ~l~~l~-~na~~ 338 (363)
...++. .||.+
T Consensus 275 ~k~kiL~~NA~r 286 (293)
T COG2159 275 VKEKILGENAAR 286 (293)
T ss_pred HHHHHHHHhHHH
Confidence 654443 44444
No 237
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=62.85 E-value=78 Score=29.99 Aligned_cols=137 Identities=20% Similarity=0.254 Sum_probs=76.9
Q ss_pred HHHHHHHhhCCCceEEEecCCCCCC-----CC-hhh---HHHHHHHHHH-cCCceeeecCCCCChhhHHHHHhcCCCeee
Q 017943 177 ETVKLALEMRDLGVVGIDLSGNPTK-----GE-WTT---FLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDFLPQRIG 246 (363)
Q Consensus 177 ~~~~~a~~~~~~~vvGidl~g~e~~-----~~-~~~---~~~~~~~A~~-~gl~~~~HagE~~~~~~i~~~l~~g~~rig 246 (363)
..++.+.++..+|-.-||+.|.... .+ .++ +.++++..++ .++++.+-. ..++.+..+++.|++-|-
T Consensus 39 ~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT---~~~~va~~AL~~GadiIN 115 (282)
T PRK11613 39 DAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWISVDT---SKPEVIRESAKAGAHIIN 115 (282)
T ss_pred HHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEC---CCHHHHHHHHHcCCCEEE
Confidence 3444555555555556777653221 11 234 4445666654 477776643 566777889989988663
Q ss_pred Eeccc-CHHHHHHHhcCCCcEEEcccc----cccccc-ccC-------CCCccHHHHHHcCC---CEEecCCCCCc-cCC
Q 017943 247 HACCF-EEEEWRKLKSSKIPVEICLTS----NIRTET-ISS-------LDIHHFVDLYKAQH---PLVLCTDDSGV-FST 309 (363)
Q Consensus 247 Hg~~~-~~~~~~~l~~~~i~ve~cPtS----N~~l~~-~~~-------~~~~pi~~l~~~Gv---~v~l~TDd~~~-~~~ 309 (363)
--..+ +++.++.+++.+.++.+++.. +..... +.+ +-..-+..+.++|+ +|.+ ||++ |+.
T Consensus 116 DI~g~~d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~Iil---DPGiGF~k 192 (282)
T PRK11613 116 DIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLL---DPGFGFGK 192 (282)
T ss_pred ECCCCCCHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEE---eCCCCcCC
Confidence 22222 677788899999999999862 111000 000 01123455678888 4555 4553 446
Q ss_pred ChHHHHHHHH
Q 017943 310 SVSREYDLAA 319 (363)
Q Consensus 310 ~l~~E~~~~~ 319 (363)
+..+.+.++.
T Consensus 193 ~~~~n~~ll~ 202 (282)
T PRK11613 193 NLSHNYQLLA 202 (282)
T ss_pred CHHHHHHHHH
Confidence 6656655554
No 238
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=62.40 E-value=78 Score=31.27 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=79.4
Q ss_pred HHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCC------hhhHHHHHh---cCCCeeeE
Q 017943 177 ETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPN------KEEIQSMLD---FLPQRIGH 247 (363)
Q Consensus 177 ~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~------~~~i~~~l~---~g~~rigH 247 (363)
+.++.+.+. ..++.++-.. .+.++..+ |-+.|....+|..=.-. |.-+..++. +-+.-|.=
T Consensus 179 ~~i~~l~~~--gi~vs~GHs~----A~~~~~~~----a~~~Ga~~~THlfNaM~~~~hR~pg~vga~l~~~~~~~elI~D 248 (382)
T PRK11170 179 EVIRKLVEA--GIVVSAGHSN----ATYEEAKA----GFRAGITFATHLYNAMPYITGREPGLVGAILDEPDVYCGIIAD 248 (382)
T ss_pred HHHHHHHHC--CcEEEeeCCc----CCHHHHHH----HHHcCCCEEeeccccCCcccCCCcchhhHhhcCCCcEEEEEcC
Confidence 555554433 1244444332 23344443 33568999999842211 122344553 22455777
Q ss_pred ecccCHHHHHHHhcCC-CcEEEccccccc-cccccCCCCccH---HHHHHcCCCEEecCCCCCccC--CChHHHHHHHHH
Q 017943 248 ACCFEEEEWRKLKSSK-IPVEICLTSNIR-TETISSLDIHHF---VDLYKAQHPLVLCTDDSGVFS--TSVSREYDLAAS 320 (363)
Q Consensus 248 g~~~~~~~~~~l~~~~-i~ve~cPtSN~~-l~~~~~~~~~pi---~~l~~~Gv~v~l~TDd~~~~~--~~l~~E~~~~~~ 320 (363)
|++++|+.++.+.+.. =.+ +..|... ..+.++ +...+ .-..+.|. +.+ .|+. +.+ .+|.++++.+..
T Consensus 249 g~Hv~p~~~~~~~~~k~~~~--~lvtDa~~~~G~~~-g~y~l~~~~v~v~~g~-~~~-~~G~-LAGs~l~l~~~v~~l~~ 322 (382)
T PRK11170 249 GLHVDYANIRNAKRLKGDKL--CLVTDATAPAGANI-EQFIFAGKTIYYRDGL-CVD-ENGT-LSGSALTMIEAVRNLVE 322 (382)
T ss_pred cccCCHHHHHHHHHhcCCcE--EEEeccccCCCCCC-CeEEECCEEEEEECCE-EEC-CCCc-ccccHhHHHHHHHHHHH
Confidence 8899998888774433 111 1222211 111111 11110 00122331 122 2322 333 799999999998
Q ss_pred HCCCCHHHHHH-HHHHHHHHcCCCh
Q 017943 321 AFSLGRREMFQ-LAKSAVKFIFANG 344 (363)
Q Consensus 321 ~~~l~~~~l~~-l~~na~~~sf~~~ 344 (363)
..+++++++.+ ++.|+++...+++
T Consensus 323 ~~~~~~~eal~~aT~npA~~lgl~~ 347 (382)
T PRK11170 323 HVGIALDEALRMATLYPARAIGVDK 347 (382)
T ss_pred hcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 89999999665 5679999988753
No 239
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=62.04 E-value=53 Score=32.06 Aligned_cols=190 Identities=8% Similarity=-0.035 Sum_probs=109.2
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCCh--h------------hHHHH-HHHHHHcCCceeeecCCCCC----
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEW--T------------TFLPA-LKFAREQGLQITLHCGEIPN---- 230 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~--~------------~~~~~-~~~A~~~gl~~~~HagE~~~---- 230 (363)
.+.+.+...++-|.+.+.+.|+.+.-.+....... + .+..+ ...|++.++|+.+|..-..+
T Consensus 24 ~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~~~ 103 (345)
T cd00946 24 TSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVLHTDHCAKKLLP 103 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCccch
Confidence 45688888999998888876766644322211111 0 23333 34677889999999987665
Q ss_pred -hhhHHH--------HHhcCCCee-eEeccc--------CHHHHHHHhcCCCcEEEccccc--cccccc------cCCCC
Q 017943 231 -KEEIQS--------MLDFLPQRI-GHACCF--------EEEEWRKLKSSKIPVEICLTSN--IRTETI------SSLDI 284 (363)
Q Consensus 231 -~~~i~~--------~l~~g~~ri-gHg~~~--------~~~~~~~l~~~~i~ve~cPtSN--~~l~~~------~~~~~ 284 (363)
.+.+.+ +++.|.+.+ -=|..+ +.+.+++....|+.||.-.-.= ..-+.. ..+-+
T Consensus 104 ~~~~~~~a~~~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~~~~~~~~~~yT 183 (345)
T cd00946 104 WFDGLLEADEEYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVDNSGVDNAELYT 183 (345)
T ss_pred hhHHHHHHHHHHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCcccccccccccCC
Confidence 222222 334454432 011122 2356788899999998544320 000000 01113
Q ss_pred cc--HHHHHHc-----CC---CEEecCCCCCc------cCCChHHHHHHH-HH----------------HCCCCHHHHHH
Q 017943 285 HH--FVDLYKA-----QH---PLVLCTDDSGV------FSTSVSREYDLA-AS----------------AFSLGRREMFQ 331 (363)
Q Consensus 285 ~p--i~~l~~~-----Gv---~v~l~TDd~~~------~~~~l~~E~~~~-~~----------------~~~l~~~~l~~ 331 (363)
.| ..++.++ |+ -|++||==..+ .+.++..+++.. .+ .-|++.+++.+
T Consensus 184 dPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~k 263 (345)
T cd00946 184 QPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREKLGLADDKPLYFVFHGGSGSTKEEIRE 263 (345)
T ss_pred CHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHhhccccCCCCCEEEeCCCCCCHHHHHH
Confidence 44 5667765 54 46777642222 234566666332 11 12678888999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 017943 332 LAKSAVKFIFANGRVKEDLKEIFDLAEK 359 (363)
Q Consensus 332 l~~na~~~sf~~~~~K~~l~~~~~~~~~ 359 (363)
+..+++.-.=++-+.+....+.+.++.+
T Consensus 264 ai~~GI~KiNi~T~l~~a~~~~i~~~~~ 291 (345)
T cd00946 264 AISYGVVKMNIDTDTQWAYWEGVRNYYL 291 (345)
T ss_pred HHHcCCeeEEeCcHHHHHHHHHHHHHHh
Confidence 9999988887887887777777777654
No 240
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=61.56 E-value=1.4e+02 Score=27.68 Aligned_cols=23 Identities=4% Similarity=0.180 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHcCCceeeecCCC
Q 017943 206 TFLPALKFAREQGLQITLHCGEI 228 (363)
Q Consensus 206 ~~~~~~~~A~~~gl~~~~HagE~ 228 (363)
.++.+.+.|+++|+.+.+|..+.
T Consensus 139 ~l~~l~~~A~~~GV~i~iE~~~~ 161 (283)
T PRK13209 139 GLKESVELASRASVTLAFEIMDT 161 (283)
T ss_pred HHHHHHHHHHHhCCEEEEeecCC
Confidence 45677888999999999987543
No 241
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=61.45 E-value=69 Score=29.84 Aligned_cols=80 Identities=23% Similarity=0.268 Sum_probs=53.1
Q ss_pred ceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHH---h-----cC--CCeeeEeccc--C----
Q 017943 189 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSML---D-----FL--PQRIGHACCF--E---- 252 (363)
Q Consensus 189 ~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l---~-----~g--~~rigHg~~~--~---- 252 (363)
.+-|+-..|+|..-..+...++++.||+.|+++.++..-...++.....+ + +. .+.. |.-.. +
T Consensus 83 ~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~~~l~~~~D~v~~DlK~~~~~~-y~~~tg~~~~~v 161 (260)
T COG1180 83 SGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFLPPEALEELLPLLDAVLLDLKAFDDEL-YRKLTGADNEPV 161 (260)
T ss_pred CCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHhhcCeEEEeeccCChHH-HHHHhCCCcHHH
Confidence 46688888888877778899999999999999999975444443332222 2 11 1222 32211 1
Q ss_pred HHHHHHHhcCCCcEEEc
Q 017943 253 EEEWRKLKSSKIPVEIC 269 (363)
Q Consensus 253 ~~~~~~l~~~~i~ve~c 269 (363)
-+.++++++.|+++++.
T Consensus 162 l~~~~~l~~~g~~ve~r 178 (260)
T COG1180 162 LENLELLADLGVHVEIR 178 (260)
T ss_pred HHHHHHHHcCCCeEEEE
Confidence 25688899999999864
No 242
>PRK13753 dihydropteroate synthase; Provisional
Probab=61.36 E-value=89 Score=29.56 Aligned_cols=94 Identities=11% Similarity=0.080 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCC-----CCh-hhHH---HHHHHHHHcCCceeeecCCCCChhhHHHHHhcC
Q 017943 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTK-----GEW-TTFL---PALKFAREQGLQITLHCGEIPNKEEIQSMLDFL 241 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~-----~~~-~~~~---~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g 241 (363)
+++.+.+..+ .+..+|..-||+.|.... .++ +++. ++++..++.+.++.+- +..++.+..+++.|
T Consensus 23 ~~d~a~~~a~---~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~ISID---T~~~~va~~al~aG 96 (279)
T PRK13753 23 DPAGAVTAAI---EMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHRVSID---SFQPETQRYALKRG 96 (279)
T ss_pred CHHHHHHHHH---HHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCcEEEE---CCCHHHHHHHHHcC
Confidence 4444444444 444445556777664321 121 3455 7788888777777663 45667778899999
Q ss_pred CCeeeE--ecccCHHHHHHHhcCCCcEEEccc
Q 017943 242 PQRIGH--ACCFEEEEWRKLKSSKIPVEICLT 271 (363)
Q Consensus 242 ~~rigH--g~~~~~~~~~~l~~~~i~ve~cPt 271 (363)
++-|-- |.. +++..+.+++.+++++++=.
T Consensus 97 adiINDVsg~~-d~~~~~vva~~~~~vVlmH~ 127 (279)
T PRK13753 97 VGYLNDIQGFP-DPALYPDIAEADCRLVVMHS 127 (279)
T ss_pred CCEEEeCCCCC-chHHHHHHHHcCCCEEEEec
Confidence 876532 333 67778888999888876543
No 243
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=61.17 E-value=80 Score=28.92 Aligned_cols=128 Identities=15% Similarity=0.095 Sum_probs=77.0
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcC-CCeeeEe---c---ccCHHHHHHHhcCCCcEEEccccccc
Q 017943 203 EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFL-PQRIGHA---C---CFEEEEWRKLKSSKIPVEICLTSNIR 275 (363)
Q Consensus 203 ~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g-~~rigHg---~---~~~~~~~~~l~~~~i~ve~cPtSN~~ 275 (363)
++...+...+.-+.. +.+=+.+.++....+.+.+-+ +|-+.|= - .++..+++.++++++.+|+....=+.
T Consensus 62 s~~~~r~~~~kfr~~---~dlI~V~~~~lkv~R~Av~~~rVDil~~p~~~r~~~gldh~~a~laa~~~valeisl~~ll~ 138 (229)
T COG1603 62 SPSQLRRLVKKFRSK---VDLIAVEPGSLKVNRAAVENKRVDILSHPETGRKDPGLDHVLARLAAEKGVALEISLRPLLR 138 (229)
T ss_pred ChHHHHHHHHhhhcc---eeEEEEccCcHHHHHHHHhccCccEEEcccccCCCccccHHHHHHHHhcCceEEEehHHhhc
Confidence 456666555554432 222334445666667776644 7777772 1 24557899999999999986653222
Q ss_pred cccccC---CC--CccHHHHHHcCCCEEecCCCCCccCCChHHHHHHHHHHCCCCHHHHHHHH
Q 017943 276 TETISS---LD--IHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRREMFQLA 333 (363)
Q Consensus 276 l~~~~~---~~--~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~~~l~~~~l~~l~ 333 (363)
..+... +. ..-++.-.+.|+|+.++||-......--..+...+++.+|+..++.+.++
T Consensus 139 ~~g~~Ra~~l~~lr~~lrl~rk~~v~ivvtS~A~s~~elrsP~dv~sl~~~lG~e~~ea~~~~ 201 (229)
T COG1603 139 SSGYRRARLLSFLRSLLRLARKYDVPIVVTSDAESPLELRSPRDVISLAKVLGLEDDEAKKSL 201 (229)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCChhhhcChhhHHHHHHHhCCCHHHHHHHH
Confidence 111000 00 01122234679999999998776664334555666678999998876654
No 244
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=60.07 E-value=1.7e+02 Score=28.46 Aligned_cols=52 Identities=23% Similarity=0.256 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeee
Q 017943 169 RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (363)
Q Consensus 169 ~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~H 224 (363)
..+.+...+.++.+.+. ++..|.+.|.|....+ .+.++++.+++.|+.+.+-
T Consensus 45 ~~~~e~~~~ii~~~~~~---g~~~v~~~GGEPll~~-~~~~il~~~~~~g~~~~i~ 96 (378)
T PRK05301 45 ELSTEEWIRVLREARAL---GALQLHFSGGEPLLRK-DLEELVAHARELGLYTNLI 96 (378)
T ss_pred CCCHHHHHHHHHHHHHc---CCcEEEEECCccCCch-hHHHHHHHHHHcCCcEEEE
Confidence 45667777777766554 4567777776665444 4778889999888766543
No 245
>PRK08417 dihydroorotase; Provisional
Probab=60.05 E-value=1.2e+02 Score=29.77 Aligned_cols=150 Identities=13% Similarity=0.133 Sum_probs=80.2
Q ss_pred ceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCC--------------------hh-----hHHHHHhc---
Q 017943 189 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPN--------------------KE-----EIQSMLDF--- 240 (363)
Q Consensus 189 ~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~--------------------~~-----~i~~~l~~--- 240 (363)
|+.+|-..+ ..+...+..+++.|++.|.++.+|+-+..- |. .+..++.+
T Consensus 117 Gv~~~k~~~---~~~~~~l~~~~~~a~~~g~~V~~HaEd~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~la~~ 193 (386)
T PRK08417 117 GAKALELSS---DLDANLLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMNDGELSFELGLPGIPSIAETKEVAKMKELAKF 193 (386)
T ss_pred CCEEEECCC---CCCHHHHHHHHHHHHHcCCEEEEeCCCHHHhhHHHHhcChhhHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 566654433 245678999999999999999999843210 00 11122222
Q ss_pred -CCCeeeEecccC-HHH---HHHHhcCC--CcEEEccccccccc-cccC----CC-CccHH---------HHHHcCCCEE
Q 017943 241 -LPQRIGHACCFE-EEE---WRKLKSSK--IPVEICLTSNIRTE-TISS----LD-IHHFV---------DLYKAQHPLV 298 (363)
Q Consensus 241 -g~~rigHg~~~~-~~~---~~~l~~~~--i~ve~cPtSN~~l~-~~~~----~~-~~pi~---------~l~~~Gv~v~ 298 (363)
|+ | -|-++++ .+. ++..+++| |..|+||-.=.... .+.+ +. .+|+| +.+..|.-=+
T Consensus 194 ~~~-~-lhi~hvS~~~~~~~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~ 271 (386)
T PRK08417 194 YKN-K-VLFDTLALPRSLELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEGKIDF 271 (386)
T ss_pred hCC-C-EEEEeCCCHHHHHHHHHHHHCCCCEEEEechHHHeeCHHHhcCcCcccEECCCCCCHHHHHHHHHHHhcCCceE
Confidence 22 2 4666553 344 44445565 66799996322111 0111 11 24543 3345676669
Q ss_pred ecCCCCCcc-------------C-CChHHHHH----HHHHHCCCCHHHHHHH-HHHHHHHcCCC
Q 017943 299 LCTDDSGVF-------------S-TSVSREYD----LAASAFSLGRREMFQL-AKSAVKFIFAN 343 (363)
Q Consensus 299 l~TDd~~~~-------------~-~~l~~E~~----~~~~~~~l~~~~l~~l-~~na~~~sf~~ 343 (363)
|+||-.... | .++-.-+- .+....+++.+++.++ +.|+++..-++
T Consensus 272 i~SDHaP~~~~~K~~~~~~a~~G~~g~e~~~~~~~~~~v~~~~~~~~~~~~~~t~~pA~~lgl~ 335 (386)
T PRK08417 272 LTSLHSAKSNSKKDLAFDEAAFGIDSICEYFSLCYTYLVKEGIITWSELSRFTSYNPAQFLGLN 335 (386)
T ss_pred EEcCCCCCCHHHccCCHhHCCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCC
Confidence 999965432 1 11111111 2222345899987665 57888877654
No 246
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=59.89 E-value=80 Score=26.20 Aligned_cols=20 Identities=10% Similarity=-0.142 Sum_probs=16.1
Q ss_pred HHHHHHhcCCeEEEEeeCCC
Q 017943 81 VVEDFASENIVYLELRTTPK 100 (363)
Q Consensus 81 ~~~~~~~~gV~y~E~r~~p~ 100 (363)
.+.++...||+|+|+|+...
T Consensus 33 ~i~~qL~~GvR~~dirv~~~ 52 (135)
T smart00148 33 GYIQALDHGCRCVELDCWDG 52 (135)
T ss_pred HHHHHHHhCCCEEEEEcccC
Confidence 55567779999999998754
No 247
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=59.63 E-value=1.3e+02 Score=26.90 Aligned_cols=84 Identities=12% Similarity=0.078 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeE--ecccCHHHHHHHhcCCC-cEEEccccccccccccCCCC
Q 017943 208 LPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH--ACCFEEEEWRKLKSSKI-PVEICLTSNIRTETISSLDI 284 (363)
Q Consensus 208 ~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigH--g~~~~~~~~~~l~~~~i-~ve~cPtSN~~l~~~~~~~~ 284 (363)
.++.+.+++.|.++-.= ...++++..+.++|++-+.= .-.+.++.++.+++.-- .+.+||+. ++ ..
T Consensus 94 ~~v~~~~~~~~~~~~~G---~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~~~~ipvvaiG-----GI---~~ 162 (206)
T PRK09140 94 PEVIRRAVALGMVVMPG---VATPTEAFAALRAGAQALKLFPASQLGPAGIKALRAVLPPDVPVFAVG-----GV---TP 162 (206)
T ss_pred HHHHHHHHHCCCcEEcc---cCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhhcCCCCeEEEEC-----CC---CH
Confidence 34566677778776543 23566788888899887761 11234566776665322 25556653 32 33
Q ss_pred ccHHHHHHcCCC-EEecCC
Q 017943 285 HHFVDLYKAQHP-LVLCTD 302 (363)
Q Consensus 285 ~pi~~l~~~Gv~-v~l~TD 302 (363)
..+.+++++|.. ++++|.
T Consensus 163 ~n~~~~~~aGa~~vav~s~ 181 (206)
T PRK09140 163 ENLAPYLAAGAAGFGLGSA 181 (206)
T ss_pred HHHHHHHHCCCeEEEEehH
Confidence 578999999986 555665
No 248
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=59.44 E-value=1.2e+02 Score=26.17 Aligned_cols=89 Identities=20% Similarity=0.246 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhCCCceEEEecC--CCCCCCCh--------hhHHHHHHHHHHcCCceeeecCCCCC---h---hhHHH
Q 017943 173 EAAMETVKLALEMRDLGVVGIDLS--GNPTKGEW--------TTFLPALKFAREQGLQITLHCGEIPN---K---EEIQS 236 (363)
Q Consensus 173 e~~~~~~~~a~~~~~~~vvGidl~--g~e~~~~~--------~~~~~~~~~A~~~gl~~~~HagE~~~---~---~~i~~ 236 (363)
+...+.++.|..+..+ .+.+... +.....+. +.+..+.+.|+++|+.+.++-.-... . +.+..
T Consensus 71 ~~~~~~i~~a~~lg~~-~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~ 149 (213)
T PF01261_consen 71 EYLKKAIDLAKRLGAK-YIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYR 149 (213)
T ss_dssp HHHHHHHHHHHHHTBS-EEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-ceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHH
Confidence 4455666666666443 3333333 11111111 24667778889999998888643332 1 34444
Q ss_pred HHh-cCCCee------eEecccCH---HHHHHHhcC
Q 017943 237 MLD-FLPQRI------GHACCFEE---EEWRKLKSS 262 (363)
Q Consensus 237 ~l~-~g~~ri------gHg~~~~~---~~~~~l~~~ 262 (363)
.++ .+.+.+ +|...... +.++.++++
T Consensus 150 ~l~~~~~~~~~i~~D~~h~~~~~~~~~~~i~~~~~~ 185 (213)
T PF01261_consen 150 LLEEVDSPNVGICFDTGHLIMAGEDPDEAIKRLAPR 185 (213)
T ss_dssp HHHHHTTTTEEEEEEHHHHHHTTHHHHHHHHHHHHG
T ss_pred HHhhcCCCcceEEEehHHHHHcCCCHHHHHHHhhcc
Confidence 444 454444 46554432 455555555
No 249
>PRK06256 biotin synthase; Validated
Probab=57.12 E-value=1e+02 Score=29.54 Aligned_cols=84 Identities=21% Similarity=0.156 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCC-CChhhHHHHHHHHHHc-CCceeeecCCCCChhhHHHHHhcCCCee
Q 017943 168 RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTK-GEWTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRI 245 (363)
Q Consensus 168 r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~-~~~~~~~~~~~~A~~~-gl~~~~HagE~~~~~~i~~~l~~g~~ri 245 (363)
|..++++..+.++.+.+.... -+.+-.+|.+.. .+.+.+.++++..++. ++.+.++.|- ..++.+...-+.|.+++
T Consensus 89 ~~~s~eeI~~~~~~~~~~g~~-~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~-l~~e~l~~LkeaG~~~v 166 (336)
T PRK06256 89 AWLDIEELIEAAKEAIEEGAG-TFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL-LTEEQAERLKEAGVDRY 166 (336)
T ss_pred cCCCHHHHHHHHHHHHHCCCC-EEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc-CCHHHHHHHHHhCCCEE
Confidence 345677777776666554221 122222333221 2224566667666653 5666666664 23444444446899999
Q ss_pred eEecccCH
Q 017943 246 GHACCFEE 253 (363)
Q Consensus 246 gHg~~~~~ 253 (363)
.|+...++
T Consensus 167 ~~~lEts~ 174 (336)
T PRK06256 167 NHNLETSR 174 (336)
T ss_pred ecCCccCH
Confidence 88765444
No 250
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=56.80 E-value=1.2e+02 Score=27.55 Aligned_cols=89 Identities=11% Similarity=0.133 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHHcCCceeeec-CCCCChhhHHHHH-hcCC-Ce-eeEecccCHHHHHHHhcCCCcEEEccccccccccc
Q 017943 204 WTTFLPALKFAREQGLQITLHC-GEIPNKEEIQSML-DFLP-QR-IGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETI 279 (363)
Q Consensus 204 ~~~~~~~~~~A~~~gl~~~~Ha-gE~~~~~~i~~~l-~~g~-~r-igHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~ 279 (363)
.+.+.+++...++..-.++++. |.......+...+ ..+. .+ .-+|. .+++.+.+.+.++. ++|+..-
T Consensus 193 ~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~--i~ps~~e----- 263 (348)
T cd03820 193 FDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGF--TKNIEEYYAKASIF--VLTSRFE----- 263 (348)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCC--cchHHHHHHhCCEE--EeCcccc-----
Confidence 4556666666654444444444 3322233333322 2332 22 22333 56777788877664 4564321
Q ss_pred cCCCCccHHHHHHcCCCEEecCCCC
Q 017943 280 SSLDIHHFVDLYKAQHPLVLCTDDS 304 (363)
Q Consensus 280 ~~~~~~pi~~l~~~Gv~v~l~TDd~ 304 (363)
++ ...+-+.+..|+|| |+||.+
T Consensus 264 -~~-~~~~~Ea~a~G~Pv-i~~~~~ 285 (348)
T cd03820 264 -GF-PMVLLEAMAFGLPV-ISFDCP 285 (348)
T ss_pred -cc-CHHHHHHHHcCCCE-EEecCC
Confidence 11 14578899999997 456644
No 251
>PLN02858 fructose-bisphosphate aldolase
Probab=56.32 E-value=55 Score=38.08 Aligned_cols=181 Identities=13% Similarity=0.070 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCee-eEec
Q 017943 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI-GHAC 249 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~ri-gHg~ 249 (363)
+.|.++..++-|.+.+.+.|+.+.-....+ .+.+...-+...|++..+|+.+|..-..+.+.+..+++.|-+.+ -=|-
T Consensus 1123 n~e~~~avi~aAe~~~sPvIl~~~~~~~~~-~~~~~~~~~~~~a~~~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~DgS 1201 (1378)
T PLN02858 1123 NLEGIEAVVAAAEAEKSPAILQVHPGALKQ-GGIPLVSCCIAAAEQASVPITVHFDHGTSKHELLEALELGFDSVMVDGS 1201 (1378)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCccHHhh-cCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEEeCC
Confidence 456677777777777766666655332222 22333333556788899999999988777788889999886653 1122
Q ss_pred cc--------CHHHHHHHhcCCCcEEEcccccccccccc---------CCCCcc--HHHHHHc-CC---CEEecCCCCC-
Q 017943 250 CF--------EEEEWRKLKSSKIPVEICLTSNIRTETIS---------SLDIHH--FVDLYKA-QH---PLVLCTDDSG- 305 (363)
Q Consensus 250 ~~--------~~~~~~~l~~~~i~ve~cPtSN~~l~~~~---------~~~~~p--i~~l~~~-Gv---~v~l~TDd~~- 305 (363)
.+ +.+.+++....|+.||.-.-. +++.. ..-..| ..+|.+. |+ -|+|||=-..
T Consensus 1202 ~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~---v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y 1278 (1378)
T PLN02858 1202 HLSFTENISYTKSISSLAHSKGLMVEAELGR---LSGTEDGLTVEEYEAKLTDVDQAKEFIDETGIDALAVCIGNVHGKY 1278 (1378)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEecc---cCCccCCccccccccCCCCHHHHHHHHHhcCCcEEeeecccccccC
Confidence 22 235677788889999754321 11101 011233 4566654 54 3566664211
Q ss_pred -----ccCCChHHHHHHHHH----------HCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 017943 306 -----VFSTSVSREYDLAAS----------AFSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFD 355 (363)
Q Consensus 306 -----~~~~~l~~E~~~~~~----------~~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~ 355 (363)
-.+.++..|++.... .-|++.++++++..+++.-.=+.-+.|....+.+.
T Consensus 1279 ~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~~ai~~Gi~KiNi~T~~~~a~~~~~~ 1343 (1378)
T PLN02858 1279 PASGPNLRLDLLKELRALSSKKGVLLVLHGASGLPESLIKECIENGVRKFNVNTEVRTAYMEALS 1343 (1378)
T ss_pred CCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHHHHHHHcCCeEEEeCHHHHHHHHHHHh
Confidence 123456777777652 12677788888888877776666666665555543
No 252
>PLN02389 biotin synthase
Probab=56.30 E-value=1.4e+02 Score=29.54 Aligned_cols=93 Identities=19% Similarity=0.242 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecC--CCCCCC---ChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCe
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLS--GNPTKG---EWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQR 244 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~--g~e~~~---~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~r 244 (363)
.++++..+.++.+.+. ++..|.++ |..... ..+.+.++++..++.++.+.+..|.. ..+.+...-+.|.++
T Consensus 116 Ls~EeIl~~a~~~~~~---G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l-~~E~l~~LkeAGld~ 191 (379)
T PLN02389 116 MSKDDVLEAAKRAKEA---GSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGML-EKEQAAQLKEAGLTA 191 (379)
T ss_pred CCHHHHHHHHHHHHHc---CCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCC-CHHHHHHHHHcCCCE
Confidence 4667777776666554 22233221 111111 23566677777777788877777643 344445544689999
Q ss_pred eeEecccCH----------------HHHHHHhcCCCcE
Q 017943 245 IGHACCFEE----------------EEWRKLKSSKIPV 266 (363)
Q Consensus 245 igHg~~~~~----------------~~~~~l~~~~i~v 266 (363)
+.|.+..++ +.++.+++.|+.+
T Consensus 192 ~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 192 YNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISV 229 (379)
T ss_pred EEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeE
Confidence 988765322 3577777888754
No 253
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=55.98 E-value=74 Score=30.19 Aligned_cols=80 Identities=21% Similarity=0.177 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCCh-hhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEe
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEW-TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHA 248 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~-~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg 248 (363)
.+|+++.+.++..- .+..=++|+-+...+...| -.|..+-+..+..++|+.+|-|=..+.+.++.++..|...|--+
T Consensus 156 T~peea~~Fv~~Tg--vD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~ 233 (286)
T PRK08610 156 ADPKECQELVEKTG--IDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAKINVN 233 (286)
T ss_pred CCHHHHHHHHHHHC--CCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCCeEEEec
Confidence 35777777765431 0111234444433333333 34666666667779999999885555577888888998776666
Q ss_pred ccc
Q 017943 249 CCF 251 (363)
Q Consensus 249 ~~~ 251 (363)
+.+
T Consensus 234 T~l 236 (286)
T PRK08610 234 TEN 236 (286)
T ss_pred cHH
Confidence 554
No 254
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=55.73 E-value=1.1e+02 Score=28.22 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHc-CCceeeecCCCCChhhHHHHHhcCCCeeeEeccc--CHHHHHHHhcCCCcEEEccccc
Q 017943 205 TTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTSN 273 (363)
Q Consensus 205 ~~~~~~~~~A~~~-gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~--~~~~~~~l~~~~i~ve~cPtSN 273 (363)
+.+.++.+..++. ++++.+-. ..++.+..+++.|++-|---... +++.++.+++.+.++.+++...
T Consensus 62 ~rl~~~v~~l~~~~~~piSIDT---~~~~v~~aaL~~g~~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 62 ERVIPVLRALAGEPDVPISVDT---FNAEVAEAALKAGADIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred HHHHHHHHHHHhcCCCeEEEeC---CcHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECcCC
Confidence 3466777777665 78876643 56777788888885544332222 3678888999999999988643
No 255
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=55.38 E-value=52 Score=32.97 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=22.3
Q ss_pred CChhhHHHHHHHHHHcCCceeeecCCCC
Q 017943 202 GEWTTFLPALKFAREQGLQITLHCGEIP 229 (363)
Q Consensus 202 ~~~~~~~~~~~~A~~~gl~~~~HagE~~ 229 (363)
.+.+.+.++++.+++.|+++++|+ |..
T Consensus 158 ~~~~~l~~~~~~a~~~g~~v~~H~-E~~ 184 (443)
T TIGR03178 158 VDDWQLYKGMRELARLGQLLLVHA-ENP 184 (443)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEec-cCh
Confidence 456788999999999999999994 543
No 256
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=55.27 E-value=1.6e+02 Score=26.42 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=63.6
Q ss_pred EEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCC
Q 017943 164 LSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQ 243 (363)
Q Consensus 164 ~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~ 243 (363)
+.+.|..+++.+.+.++.+.+- |+.-+.+.- .++.-+..+-..+++++-++.+=+|-....+.+..+++.|++
T Consensus 13 ~~v~r~~~~~~~~~~~~a~~~g---Gi~~iEvt~----~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~ 85 (206)
T PRK09140 13 IAILRGITPDEALAHVGALIEA---GFRAIEIPL----NSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGR 85 (206)
T ss_pred EEEEeCCCHHHHHHHHHHHHHC---CCCEEEEeC----CCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCC
Confidence 3456888888888888877764 344444431 122334455555667776677777766677778888888874
Q ss_pred eeeEecccCHHHHHHHhcCCCcE
Q 017943 244 RIGHACCFEEEEWRKLKSSKIPV 266 (363)
Q Consensus 244 rigHg~~~~~~~~~~l~~~~i~v 266 (363)
= .|.-..++++.+...+.++.+
T Consensus 86 f-ivsp~~~~~v~~~~~~~~~~~ 107 (206)
T PRK09140 86 L-IVTPNTDPEVIRRAVALGMVV 107 (206)
T ss_pred E-EECCCCCHHHHHHHHHCCCcE
Confidence 3 455556788888888888765
No 257
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=55.14 E-value=1.1e+02 Score=30.57 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHH---HHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 017943 69 TDHATVTRITQEVVE---DFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (363)
Q Consensus 69 ~~~e~~~~~~~~~~~---~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (363)
.+++.+.++++++.. |+++|- |...+|.. .++++-+.++.++++++.+
T Consensus 156 lsp~~~a~~~y~~~~GGvD~IKDD----E~l~~q~~-----~p~~eRv~~~~~a~~~a~~-------------------- 206 (406)
T cd08207 156 LTPEETAALVRQLAAAGIDFIKDD----ELLANPPY-----SPLDERVRAVMRVINDHAQ-------------------- 206 (406)
T ss_pred CCHHHHHHHHHHHHhCCCCccccc----ccCCCCCC-----CcHHHHHHHHHHHHHHHHH--------------------
Confidence 368888888777755 444443 44444332 3466778888888887643
Q ss_pred ccccccCCCCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCc-eEEEecCCCCCCCChhhHHHHHHHHHHcCCceeee
Q 017943 146 MNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (363)
Q Consensus 146 ~~~~~~~~~~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~-vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~H 224 (363)
+.|-+.. +..+-+.+.++..+..+.+.+...+. .+.+.+.| |..+-.++++.+++++.|
T Consensus 207 ---------eTG~~~~--y~~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~G---------~~~l~~l~~~~~l~IhaH 266 (406)
T cd08207 207 ---------RTGRKVM--YAFNITDDIDEMRRNHDLVVEAGGTCVMVSLNSVG---------LSGLAALRRHSQLPIHGH 266 (406)
T ss_pred ---------hhCCcce--EEEecCCCHHHHHHHHHHHHHhCCCeEEEeccccc---------hHHHHHHHhcCCceEEEC
Confidence 3444333 33444455777777777777653321 12222223 222333455679999988
Q ss_pred cCC
Q 017943 225 CGE 227 (363)
Q Consensus 225 agE 227 (363)
-+-
T Consensus 267 ra~ 269 (406)
T cd08207 267 RNG 269 (406)
T ss_pred CCc
Confidence 543
No 258
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=55.03 E-value=1.8e+02 Score=28.47 Aligned_cols=188 Identities=10% Similarity=0.013 Sum_probs=114.3
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCC---------------hhhHHHH-HHHHHHcCCceeeecCCCCCh--
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGE---------------WTTFLPA-LKFAREQGLQITLHCGEIPNK-- 231 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~---------------~~~~~~~-~~~A~~~gl~~~~HagE~~~~-- 231 (363)
.+.+.+...++-|.+.+.+.|+.+.-....+... ...+..+ ...|++..+|+.+|..-..+.
T Consensus 35 ~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPValHLDHg~~~~~ 114 (357)
T TIGR01520 35 TSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPVVLHTDHCAKKLL 114 (357)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcch
Confidence 4568888899999888887776654322111110 1113333 345778899999999877665
Q ss_pred hhHHHHHhcCCC-eeeEe---c--------cc--------CHHHHHHHhcCCCcEEEcccccccccccc-----------
Q 017943 232 EEIQSMLDFLPQ-RIGHA---C--------CF--------EEEEWRKLKSSKIPVEICLTSNIRTETIS----------- 280 (363)
Q Consensus 232 ~~i~~~l~~g~~-rigHg---~--------~~--------~~~~~~~l~~~~i~ve~cPtSN~~l~~~~----------- 280 (363)
+.+..++++|.. -+.+| + .+ +.+.+++....|+.||--.-. +++..
T Consensus 115 ~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVEaELG~---vgG~Ed~~~~~~~~~~ 191 (357)
T TIGR01520 115 PWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLEIEIGI---TGGEEDGVDNSHMDAE 191 (357)
T ss_pred HHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecc---cCCccCCccccccccc
Confidence 457777776621 11222 1 11 125678888899999854431 11111
Q ss_pred CCCCcc--HHHHHHc-----CC---CEEecCCCCCc------cCCChHHHHHHHH---------------H--HCCCCHH
Q 017943 281 SLDIHH--FVDLYKA-----QH---PLVLCTDDSGV------FSTSVSREYDLAA---------------S--AFSLGRR 327 (363)
Q Consensus 281 ~~~~~p--i~~l~~~-----Gv---~v~l~TDd~~~------~~~~l~~E~~~~~---------------~--~~~l~~~ 327 (363)
.+-+.| ..++.+. || -|+|||=-..+ .+.++..|++... . .-|++.+
T Consensus 192 ~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e 271 (357)
T TIGR01520 192 ALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQ 271 (357)
T ss_pred ccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHH
Confidence 112344 4566552 44 47888764333 2246666764221 1 1267789
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhh
Q 017943 328 EMFQLAKSAVKFIFANGRVKEDLKEIFDLAEKK 360 (363)
Q Consensus 328 ~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~~ 360 (363)
+++++..+++.-.=++-+.+..+.+.+.+..++
T Consensus 272 ~i~kai~~GI~KINi~Tdl~~A~~~a~~~~~~~ 304 (357)
T TIGR01520 272 EIKEALSYGVVKMNIDTDTQWAYWEGILNYYKN 304 (357)
T ss_pred HHHHHHHCCCeEEEeCcHHHHHHHHHHHHHHHh
Confidence 999999999999888888888888888776643
No 259
>PLN02489 homocysteine S-methyltransferase
Probab=54.49 E-value=2.1e+02 Score=27.70 Aligned_cols=141 Identities=14% Similarity=0.108 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCC--eEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccc
Q 017943 70 DHATVTRITQEVVEDFASENI--VYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMN 147 (363)
Q Consensus 70 ~~e~~~~~~~~~~~~~~~~gV--~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (363)
+.+++++..++.++-+.+.|| ..+|+..+. .+ +.++++++++..
T Consensus 161 ~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l----------~E-~~a~~~~~~~~~----------------------- 206 (335)
T PLN02489 161 TLEKLKDFHRRRLQVLAEAGPDLIAFETIPNK----------LE-AQAYVELLEEEN----------------------- 206 (335)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeccCCh----------HH-HHHHHHHHHHcC-----------------------
Confidence 568888898999998889998 567776652 22 445666665421
Q ss_pred ccccCCCCCCcEEEEEEEeeCC------CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCc
Q 017943 148 DACNGTRGKKIYVRLLLSIDRR------ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQ 220 (363)
Q Consensus 148 ~~~~~~~~~gi~~~li~~~~r~------~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~-gl~ 220 (363)
.++.+-+-+++... .+.+.+.+.++ .. ..+.+|++-+. +|+.+.++++..+.. +.+
T Consensus 207 --------~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~---~~--~~~~~iGiNC~----~p~~~~~~l~~l~~~~~~p 269 (335)
T PLN02489 207 --------IKIPAWISFNSKDGVNVVSGDSLLECASIAD---SC--KKVVAVGINCT----PPRFIHGLILSIRKVTSKP 269 (335)
T ss_pred --------CCCeEEEEEEeCCCCccCCCCcHHHHHHHHH---hc--CCceEEEecCC----CHHHHHHHHHHHHhhcCCc
Confidence 01222222222111 12233333332 11 23556665541 467777777776654 444
Q ss_pred ee--eecCCCC-------------ChhhH----HHHHhcCCCeeeEecccCHHHHHHHhc
Q 017943 221 IT--LHCGEIP-------------NKEEI----QSMLDFLPQRIGHACCFEEEEWRKLKS 261 (363)
Q Consensus 221 ~~--~HagE~~-------------~~~~i----~~~l~~g~~rigHg~~~~~~~~~~l~~ 261 (363)
+. ..+|+.. .++.. .+..+.|+.-||-|+..+|+.++.|++
T Consensus 270 l~vyPNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~iIGGCCgt~P~hI~al~~ 329 (335)
T PLN02489 270 IVVYPNSGETYDGEAKEWVESTGVSDEDFVSYVNKWRDAGASLIGGCCRTTPNTIRAISK 329 (335)
T ss_pred EEEECCCCCCCCCccCcccCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCCHHHHHHHHH
Confidence 44 3344331 12222 233346888899999999998888776
No 260
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=54.38 E-value=53 Score=30.23 Aligned_cols=64 Identities=27% Similarity=0.561 Sum_probs=47.1
Q ss_pred HHHHHHHHhhCCCceE-------------EEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCC
Q 017943 176 METVKLALEMRDLGVV-------------GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP 242 (363)
Q Consensus 176 ~~~~~~a~~~~~~~vv-------------Gidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~ 242 (363)
.++++.+++.++..++ |+|+. ...+.++++.+..++.|+++.+-.. .+++.+..+.+.|+
T Consensus 76 ~em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~-----~~~~~l~~~i~~L~~~gIrVSLFid--P~~~qi~~A~~~GA 148 (239)
T PRK05265 76 EEMLDIALEVKPHQVTLVPEKREELTTEGGLDVA-----GQFDKLKPAIARLKDAGIRVSLFID--PDPEQIEAAAEVGA 148 (239)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCccCCccchhh-----cCHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCc
Confidence 5689999988875322 22222 2346788889999999999999883 45667888888999
Q ss_pred Ceee
Q 017943 243 QRIG 246 (363)
Q Consensus 243 ~rig 246 (363)
++|.
T Consensus 149 d~VE 152 (239)
T PRK05265 149 DRIE 152 (239)
T ss_pred CEEE
Confidence 9975
No 261
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=52.68 E-value=1.3e+02 Score=27.89 Aligned_cols=93 Identities=17% Similarity=0.136 Sum_probs=56.4
Q ss_pred HHHHHHHhhCCCceEEEecCCCCC---C--CC-hh---hHHHHHHHHHHc-CCceeeecCCCCChhhHHHHHhcCCCeee
Q 017943 177 ETVKLALEMRDLGVVGIDLSGNPT---K--GE-WT---TFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRIG 246 (363)
Q Consensus 177 ~~~~~a~~~~~~~vvGidl~g~e~---~--~~-~~---~~~~~~~~A~~~-gl~~~~HagE~~~~~~i~~~l~~g~~rig 246 (363)
+.++.+.++...|-.-+|+.|... . .+ .+ .+.++.+..++. ++++.+-. ..++.+..+++.|++-|-
T Consensus 25 ~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT---~~~~v~e~al~~G~~iIN 101 (257)
T cd00739 25 KAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDT---FRAEVARAALEAGADIIN 101 (257)
T ss_pred HHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeC---CCHHHHHHHHHhCCCEEE
Confidence 344444444444555667654211 1 12 12 344456666665 78876643 566777888888876554
Q ss_pred Eecc--cCHHHHHHHhcCCCcEEEcccc
Q 017943 247 HACC--FEEEEWRKLKSSKIPVEICLTS 272 (363)
Q Consensus 247 Hg~~--~~~~~~~~l~~~~i~ve~cPtS 272 (363)
--.. .+++.++.+++.|.++.+++..
T Consensus 102 disg~~~~~~~~~l~~~~~~~vV~m~~~ 129 (257)
T cd00739 102 DVSGGSDDPAMLEVAAEYGAPLVLMHMR 129 (257)
T ss_pred eCCCCCCChHHHHHHHHcCCCEEEECCC
Confidence 3222 2367888899999999998863
No 262
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=51.97 E-value=2.1e+02 Score=27.03 Aligned_cols=125 Identities=15% Similarity=0.132 Sum_probs=66.4
Q ss_pred EEEeeCCCCHHHHHHHHHHHHhhCCCceEEEec-----------CCC--C-CCCChhhHHHHHHHHHHc--C--Cceeee
Q 017943 163 LLSIDRRETTEAAMETVKLALEMRDLGVVGIDL-----------SGN--P-TKGEWTTFLPALKFAREQ--G--LQITLH 224 (363)
Q Consensus 163 i~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl-----------~g~--e-~~~~~~~~~~~~~~A~~~--g--l~~~~H 224 (363)
+..+....++.....+++...+ .|++|+.+ .|. + ...+.+++..-.+.|++. + +.+...
T Consensus 82 ~~D~d~Gg~~~~v~r~V~~l~~---aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiAR 158 (285)
T TIGR02320 82 ILDGDTGGNFEHFRRLVRKLER---RGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIAR 158 (285)
T ss_pred EEecCCCCCHHHHHHHHHHHHH---cCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence 4455544455566666666554 47889887 111 1 123566676666666553 3 445444
Q ss_pred ----cCCCCChhhHH---HHHhcCCCee-eEecccCHHHHHHHhcC------CCcEEEccccccccccccCCCCccHHHH
Q 017943 225 ----CGEIPNKEEIQ---SMLDFLPQRI-GHACCFEEEEWRKLKSS------KIPVEICLTSNIRTETISSLDIHHFVDL 290 (363)
Q Consensus 225 ----agE~~~~~~i~---~~l~~g~~ri-gHg~~~~~~~~~~l~~~------~i~ve~cPtSN~~l~~~~~~~~~pi~~l 290 (363)
....+-.+.+. ...+.|++-+ .++...+++++..+.++ .+++.+.|+. ....++.+|
T Consensus 159 TDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~---------~~~~~~~eL 229 (285)
T TIGR02320 159 VESLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVPTS---------YYTTPTDEF 229 (285)
T ss_pred cccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEecCC---------CCCCCHHHH
Confidence 11111112232 2345788864 45433455555555442 3455444432 123468999
Q ss_pred HHcCCCEEe
Q 017943 291 YKAQHPLVL 299 (363)
Q Consensus 291 ~~~Gv~v~l 299 (363)
.+.|++..+
T Consensus 230 ~~lG~~~v~ 238 (285)
T TIGR02320 230 RDAGISVVI 238 (285)
T ss_pred HHcCCCEEE
Confidence 999998754
No 263
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=51.90 E-value=2.4e+02 Score=27.58 Aligned_cols=99 Identities=10% Similarity=0.128 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCC--------------------------ChhhHHHHHh-cCCCee------eEeccc
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIP--------------------------NKEEIQSMLD-FLPQRI------GHACCF 251 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~--------------------------~~~~i~~~l~-~g~~ri------gHg~~~ 251 (363)
..-+++.+.|+..|+.+-.=.|..+ +|+...+.++ -|+|-+ .||.+-
T Consensus 123 ~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk 202 (347)
T PRK09196 123 DVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYK 202 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCCCC
Confidence 4466788899998887765443211 1222222222 366654 599873
Q ss_pred ----------CHHHHHHHhcC--CCcEEEcccccc----------cccccc---CCCCccHHHHHHcCCC-EEecCCC
Q 017943 252 ----------EEEEWRKLKSS--KIPVEICLTSNI----------RTETIS---SLDIHHFVDLYKAQHP-LVLCTDD 303 (363)
Q Consensus 252 ----------~~~~~~~l~~~--~i~ve~cPtSN~----------~l~~~~---~~~~~pi~~l~~~Gv~-v~l~TDd 303 (363)
+-+.++.+++. ++|+++==.|.+ +-|.+. +....-+++..+.||. |=|+||-
T Consensus 203 ~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl 280 (347)
T PRK09196 203 FTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDL 280 (347)
T ss_pred CCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHH
Confidence 22345555444 577776666633 111111 1223347888888885 7777774
No 264
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=51.76 E-value=27 Score=33.37 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHcCCceeeecCCCCChhhHHHHH---hcCCCeeeEeccc----------CHHHHHHHhcCCCcEEEcccc
Q 017943 206 TFLPALKFAREQGLQITLHCGEIPNKEEIQSML---DFLPQRIGHACCF----------EEEEWRKLKSSKIPVEICLTS 272 (363)
Q Consensus 206 ~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l---~~g~~rigHg~~~----------~~~~~~~l~~~~i~ve~cPtS 272 (363)
.-+...+.|++.|.....|-.-..+.+.++--+ .+.|+--.|+-|- ..+++++.+++|||+.+.|.+
T Consensus 99 ia~~qv~va~~eg~~aVsHGcTGKGNDQvrFELt~ysl~P~~kviapwrmp~f~~rf~Gr~Dl~eYakq~giPvpvT~k~ 178 (412)
T KOG1706|consen 99 IAKAQVDVAQREGAKAVSHGCTGKGNDQVRFELTFYSLKPDVKVIAPWRMPEFYERFKGRKDLLEYAKQHGIPVPVTPKN 178 (412)
T ss_pred hhhhhhhHHhhcCceeeecccccCCCcceeeeeeeeccCCcceeeccccchHHHHhhcCchHHHHHHHhcCCCccccCCC
Confidence 345567778889999999964433333343212 2456655565432 247899999999999988875
Q ss_pred c
Q 017943 273 N 273 (363)
Q Consensus 273 N 273 (363)
-
T Consensus 179 p 179 (412)
T KOG1706|consen 179 P 179 (412)
T ss_pred C
Confidence 3
No 265
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=50.95 E-value=2.6e+02 Score=27.60 Aligned_cols=147 Identities=14% Similarity=0.187 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHHcCCceeee-cCCCCChhhHHHHHh-cCC-Ceee-EecccCHHHHHHHhcCCCcEEEccccccccccc
Q 017943 204 WTTFLPALKFAREQGLQITLH-CGEIPNKEEIQSMLD-FLP-QRIG-HACCFEEEEWRKLKSSKIPVEICLTSNIRTETI 279 (363)
Q Consensus 204 ~~~~~~~~~~A~~~gl~~~~H-agE~~~~~~i~~~l~-~g~-~rig-Hg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~ 279 (363)
.+.+.+++...++.+..+.++ +|.....+.+.+.+. +|. +++- +|..-.++..++++..++.+ +|+-....+..
T Consensus 237 ~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v--~pS~~~~~g~~ 314 (406)
T PRK15427 237 LHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFL--LPSVTGADGDM 314 (406)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEE--ECCccCCCCCc
Confidence 345666666666555555444 344332344544443 554 3432 34333467788889888766 45421111111
Q ss_pred cCCCCccHHHHHHcCCCEEecCCCCCcc------------CCChHHHHHHHHHHC-CCCHHHHHHHHHHHHH---HcCCC
Q 017943 280 SSLDIHHFVDLYKAQHPLVLCTDDSGVF------------STSVSREYDLAASAF-SLGRREMFQLAKSAVK---FIFAN 343 (363)
Q Consensus 280 ~~~~~~pi~~l~~~Gv~v~l~TDd~~~~------------~~~l~~E~~~~~~~~-~l~~~~l~~l~~na~~---~sf~~ 343 (363)
.++ -..+-+.+..|+|| |+||.++.. ..+=.+++..+...+ ..+++...++..+|-+ .-|-.
T Consensus 315 Eg~-p~~llEAma~G~PV-I~t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~ 392 (406)
T PRK15427 315 EGI-PVALMEAMAVGIPV-VSTLHSGIPELVEADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQ 392 (406)
T ss_pred cCc-cHHHHHHHhCCCCE-EEeCCCCchhhhcCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCH
Confidence 221 12367889999988 567755432 111233444444332 3356555666555543 33544
Q ss_pred hHHHHHHHHHH
Q 017943 344 GRVKEDLKEIF 354 (363)
Q Consensus 344 ~~~K~~l~~~~ 354 (363)
+..-+++.+.+
T Consensus 393 ~~~~~~l~~~~ 403 (406)
T PRK15427 393 QVINRELASLL 403 (406)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 266
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=50.85 E-value=64 Score=29.68 Aligned_cols=65 Identities=20% Similarity=0.338 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhCCCceE-------------EEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcC
Q 017943 175 AMETVKLALEMRDLGVV-------------GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFL 241 (363)
Q Consensus 175 ~~~~~~~a~~~~~~~vv-------------Gidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g 241 (363)
..++++.+++.++..++ |+|+. ...+.+.++.+..++.|+++.+-.. .+++.+..+.+.|
T Consensus 72 ~~emi~ia~~vkP~~vtLVPEkr~ElTTegGldv~-----~~~~~l~~~i~~l~~~gI~VSLFiD--P~~~qi~~A~~~G 144 (237)
T TIGR00559 72 TEEMIRIAEEIKPEQVTLVPEARDEVTTEGGLDVA-----RLKDKLCELVKRFHAAGIEVSLFID--ADKDQISAAAEVG 144 (237)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCCccCCcCchhh-----hCHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhC
Confidence 35788999988775322 22222 2345688889999999999999873 3456777888899
Q ss_pred CCeee
Q 017943 242 PQRIG 246 (363)
Q Consensus 242 ~~rig 246 (363)
+++|.
T Consensus 145 Ad~VE 149 (237)
T TIGR00559 145 ADRIE 149 (237)
T ss_pred cCEEE
Confidence 99975
No 267
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=50.21 E-value=95 Score=28.20 Aligned_cols=150 Identities=17% Similarity=0.174 Sum_probs=84.8
Q ss_pred hCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEeccc--CHHHHHHHhc-
Q 017943 185 MRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKS- 261 (363)
Q Consensus 185 ~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~--~~~~~~~l~~- 261 (363)
...+.+.=+||.+... ..+..+.-+.+.++..++++++=.|= ...+.+...++.|++|+.=|+.. +++.++.+.+
T Consensus 41 ~g~~~l~ivDLdaa~~-g~~~n~~~i~~i~~~~~~~i~vgGGI-rs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~ 118 (229)
T PF00977_consen 41 QGADELHIVDLDAAKE-GRGSNLELIKEIAKETGIPIQVGGGI-RSIEDAERLLDAGADRVVIGTEALEDPELLEELAER 118 (229)
T ss_dssp TT-SEEEEEEHHHHCC-THHHHHHHHHHHHHHSSSEEEEESSE--SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHH
T ss_pred cCCCEEEEEEccCccc-CchhHHHHHHHHHhcCCccEEEeCcc-CcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHH
Confidence 3445677888876532 23455666677788889999987653 34566777888999997777643 6666666555
Q ss_pred ---CCCcEEEccccc--cccccccCC-CCcc---HHHHHHcCCCEEecCC---CCCccCCChHHHHHHHHHHC-------
Q 017943 262 ---SKIPVEICLTSN--IRTETISSL-DIHH---FVDLYKAQHPLVLCTD---DSGVFSTSVSREYDLAASAF------- 322 (363)
Q Consensus 262 ---~~i~ve~cPtSN--~~l~~~~~~-~~~p---i~~l~~~Gv~v~l~TD---d~~~~~~~l~~E~~~~~~~~------- 322 (363)
..|.+.+--..+ +.+.++... ...| +.++.+.|+.=.|-|| +....+.++ +-++.+....
T Consensus 119 ~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~-~~~~~l~~~~~~~vias 197 (229)
T PF00977_consen 119 YGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDL-ELLKQLAEAVNIPVIAS 197 (229)
T ss_dssp HGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--H-HHHHHHHHHHSSEEEEE
T ss_pred cCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCH-HHHHHHHHHcCCCEEEe
Confidence 356665554444 222222111 1123 5677889998767777 223334444 2233343332
Q ss_pred -CC-CHHHHHHHHHHHH
Q 017943 323 -SL-GRREMFQLAKSAV 337 (363)
Q Consensus 323 -~l-~~~~l~~l~~na~ 337 (363)
|. +.+|+.++...++
T Consensus 198 GGv~~~~Dl~~l~~~G~ 214 (229)
T PF00977_consen 198 GGVRSLEDLRELKKAGI 214 (229)
T ss_dssp SS--SHHHHHHHHHTTE
T ss_pred cCCCCHHHHHHHHHCCC
Confidence 44 7788888875444
No 268
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=49.93 E-value=2.9e+02 Score=28.01 Aligned_cols=91 Identities=22% Similarity=0.191 Sum_probs=61.0
Q ss_pred ChhhHHHHHHHHHH-cCCceeeecCCCCChhhHHHHHhcCCCe--eeEecccC--HHHHHHHhcCCCcEEEccccccccc
Q 017943 203 EWTTFLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDFLPQR--IGHACCFE--EEEWRKLKSSKIPVEICLTSNIRTE 277 (363)
Q Consensus 203 ~~~~~~~~~~~A~~-~gl~~~~HagE~~~~~~i~~~l~~g~~r--igHg~~~~--~~~~~~l~~~~i~ve~cPtSN~~l~ 277 (363)
+++.+.++.+..++ .++++.+-. .+++.+..+++.|+++ +-.+...+ ++..+..++.|.++.+.+.. +.
T Consensus 139 dp~~v~~~Vk~V~~~~dvPLSIDT---~dpevleaAleagad~~plI~Sat~dN~~~m~~la~~yg~pvVv~~~d---l~ 212 (450)
T PRK04165 139 DPEKFAKAVKKVAETTDLPLILCS---EDPAVLKAALEVVADRKPLLYAATKENYEEMAELAKEYNCPLVVKAPN---LE 212 (450)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEeC---CCHHHHHHHHHhcCCCCceEEecCcchHHHHHHHHHHcCCcEEEEchh---HH
Confidence 56788888888877 589988754 5677788888887764 33444334 55667778889999886642 11
Q ss_pred cccCCCCccHHHHHHcCCCEEecCC---CCCccC
Q 017943 278 TISSLDIHHFVDLYKAQHPLVLCTD---DSGVFS 308 (363)
Q Consensus 278 ~~~~~~~~pi~~l~~~Gv~v~l~TD---d~~~~~ 308 (363)
. ...-+.++.++|+ .| ||+..+
T Consensus 213 ~----L~~lv~~~~~~GI-----~dIILDPg~gg 237 (450)
T PRK04165 213 E----LKELVEKLQAAGI-----KDLVLDPGTEN 237 (450)
T ss_pred H----HHHHHHHHHHcCC-----CcEEECCCCch
Confidence 1 1123566788998 45 676654
No 269
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=49.47 E-value=2.1e+02 Score=31.30 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=36.5
Q ss_pred HHHHHHhhCC--CceEEE-ecCCCCCCCChhhHHHHHHH-HHHcCCceeeecCCCCChh--hHHHHHhcCCCee
Q 017943 178 TVKLALEMRD--LGVVGI-DLSGNPTKGEWTTFLPALKF-AREQGLQITLHCGEIPNKE--EIQSMLDFLPQRI 245 (363)
Q Consensus 178 ~~~~a~~~~~--~~vvGi-dl~g~e~~~~~~~~~~~~~~-A~~~gl~~~~HagE~~~~~--~i~~~l~~g~~ri 245 (363)
.+++|.+... -.|.|| |++|--. |.--..++.. -.+.++|+++|...+.+-. ....|++.|+|-+
T Consensus 696 Y~~lA~el~~~GaHIlaIKDMAGLLK---P~AA~~Li~aLr~~~dlPIHlHTHDTsG~~~at~~aA~~AGvDiv 766 (1149)
T COG1038 696 YVKLAKELEKAGAHILAIKDMAGLLK---PAAAYRLISALRETVDLPIHLHTHDTSGNGVATYLAAVEAGVDIV 766 (1149)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhccC---HHHHHHHHHHHHHhcCCceEEeccCCCccHHHHHHHHHHcCCchh
Confidence 4555555433 247887 7777322 2223333333 3446999999998777542 2344555666554
No 270
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=49.19 E-value=2.4e+02 Score=26.71 Aligned_cols=118 Identities=13% Similarity=0.171 Sum_probs=66.0
Q ss_pred CCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEE-EeeCCCCHHHHHHHHHHHH
Q 017943 105 IGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLL-SIDRRETTEAAMETVKLAL 183 (363)
Q Consensus 105 ~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~-~~~r~~~~e~~~~~~~~a~ 183 (363)
-+.+.++.++.+.+.++.+++..... -..++.+.+-. ...| .+++...+.++.+.
T Consensus 111 ~~~s~~e~~~~~~~~v~~a~~~g~~~-----------------------~~~~~~~~~~~EDasr-~~~~~l~~~~~~~~ 166 (284)
T cd07942 111 FGKSKEEIIEIAVDGAKLVKELAAKY-----------------------PETDWRFEYSPESFSD-TELDFALEVCEAVI 166 (284)
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcccc-----------------------cCceEEEEECCccCCC-CCHHHHHHHHHHHH
Confidence 47888999999888888765411000 00112222221 1124 35677777777776
Q ss_pred hhCCCc---eEEEecCCCCCCCChhhHHHHHHHHHHc-----CCceeeecCCCCCh--hhHHHHHhcCCCeee
Q 017943 184 EMRDLG---VVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDFLPQRIG 246 (363)
Q Consensus 184 ~~~~~~---vvGidl~g~e~~~~~~~~~~~~~~A~~~-----gl~~~~HagE~~~~--~~i~~~l~~g~~rig 246 (363)
+....+ +.-|.++..-....|..+...+...++. ++++.+|+.-..+- .+...+++.|++++.
T Consensus 167 ~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~~~id 239 (284)
T cd07942 167 DVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGADRVE 239 (284)
T ss_pred HhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCCCEEE
Confidence 652212 2234444211124567777777766553 45677787654443 455677888999876
No 271
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=48.90 E-value=16 Score=26.02 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=19.1
Q ss_pred hhcccc-----CCCCCHHHHHHHHHHhccCCCC
Q 017943 11 ELHAHL-----NGSIRDSTLLELARVLGEKGVI 38 (363)
Q Consensus 11 eLH~HL-----~Gsi~~~~l~~la~~~~~~~~~ 38 (363)
|||+|- +|.++++.+.+.|+ ++|+.
T Consensus 1 dlH~Ht~~S~~~~~~~~~~~~~~a~---~~g~~ 30 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAK---ELGLK 30 (67)
T ss_pred CCccccCCccccccCCHHHHHHHHH---HcCCC
Confidence 577774 67789999999998 46664
No 272
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=48.33 E-value=2.1e+02 Score=25.88 Aligned_cols=92 Identities=18% Similarity=0.192 Sum_probs=54.8
Q ss_pred EeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCe
Q 017943 165 SIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQR 244 (363)
Q Consensus 165 ~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~r 244 (363)
.+.|..+++++..+.+...+- |+-.+.+- ..++.-+..+-..+++++ .+.+=+|-.-+++.+.++.+.|++-
T Consensus 17 ~Vlr~~~~e~a~~~a~Ali~g---Gi~~IEIT----l~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~f 88 (211)
T COG0800 17 PVIRGDDVEEALPLAKALIEG---GIPAIEIT----LRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQF 88 (211)
T ss_pred EEEEeCCHHHHHHHHHHHHHc---CCCeEEEe----cCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCE
Confidence 456777788887777666543 44444433 134455666666677777 7777788777788888888877654
Q ss_pred eeEecccCHHHHHHHhcCCCc
Q 017943 245 IGHACCFEEEEWRKLKSSKIP 265 (363)
Q Consensus 245 igHg~~~~~~~~~~l~~~~i~ 265 (363)
+. .=.+++++++...+++++
T Consensus 89 iV-sP~~~~ev~~~a~~~~ip 108 (211)
T COG0800 89 IV-SPGLNPEVAKAANRYGIP 108 (211)
T ss_pred EE-CCCCCHHHHHHHHhCCCc
Confidence 31 001234444444444444
No 273
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=48.32 E-value=75 Score=29.18 Aligned_cols=65 Identities=23% Similarity=0.504 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhCCCceE-------------EEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcC
Q 017943 175 AMETVKLALEMRDLGVV-------------GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFL 241 (363)
Q Consensus 175 ~~~~~~~a~~~~~~~vv-------------Gidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g 241 (363)
..++++.+++.++..++ |+|+. ...+.+.++.+..++.|+++.+-.. .+++.+..+.+.|
T Consensus 72 t~em~~ia~~~kP~~vtLVPEkr~E~TTegGldv~-----~~~~~l~~~i~~l~~~gI~VSLFiD--Pd~~qi~~A~~~G 144 (234)
T cd00003 72 TEEMLEIALEVKPHQVTLVPEKREELTTEGGLDVA-----GQAEKLKPIIERLKDAGIRVSLFID--PDPEQIEAAKEVG 144 (234)
T ss_pred CHHHHHHHHHCCCCEEEECCCCCCCccCCccchhh-----cCHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhC
Confidence 36788999988875322 23322 2346788889999999999999883 3456677788899
Q ss_pred CCeee
Q 017943 242 PQRIG 246 (363)
Q Consensus 242 ~~rig 246 (363)
+++|.
T Consensus 145 Ad~VE 149 (234)
T cd00003 145 ADRVE 149 (234)
T ss_pred cCEEE
Confidence 99975
No 274
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=47.40 E-value=5.1e+02 Score=30.01 Aligned_cols=145 Identities=15% Similarity=0.140 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCC--eEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccc
Q 017943 70 DHATVTRITQEVVEDFASENI--VYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMN 147 (363)
Q Consensus 70 ~~e~~~~~~~~~~~~~~~~gV--~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (363)
+.+.++...++.++-++..|| ..+|+.+++. + +.+++.+++++.++
T Consensus 158 t~del~~~y~eQi~~L~e~GVDllliETi~d~~----------E-akAal~a~~~~~~~--------------------- 205 (1229)
T PRK09490 158 TFDELVAAYREQTRGLIEGGADLILIETIFDTL----------N-AKAAIFAVEEVFEE--------------------- 205 (1229)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeeeCCHH----------H-HHHHHHHHHHHHhh---------------------
Confidence 458888999999999999998 6788888732 1 44555555554210
Q ss_pred ccccCCCCCCcEEEEEEEee----CCC---CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCC
Q 017943 148 DACNGTRGKKIYVRLLLSID----RRE---TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGL 219 (363)
Q Consensus 148 ~~~~~~~~~gi~~~li~~~~----r~~---~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~-~gl 219 (363)
...++.+-+-+++. |.. +++.+...++ ..++.++++-+. ..|+.+.+.++...+ .+.
T Consensus 206 ------~~~~lPv~vS~T~~d~~Gr~lsG~~~ea~~~~l~------~~~~~avGlNCs---~GP~~m~~~l~~l~~~~~~ 270 (1229)
T PRK09490 206 ------LGVRLPVMISGTITDASGRTLSGQTTEAFWNSLR------HAKPLSIGLNCA---LGADELRPYVEELSRIADT 270 (1229)
T ss_pred ------cCCCCeEEEEEEEECCCCccCCCCcHHHHHHHHh------cCCCCEEEEcCC---CcHHHHHHHHHHHHHhcCC
Confidence 11223333333432 222 2233322221 223445554331 135677777666543 356
Q ss_pred ceeee--cCCCC-------ChhhHH----HHHhcC-CCeeeEecccCHHHHHHHhc
Q 017943 220 QITLH--CGEIP-------NKEEIQ----SMLDFL-PQRIGHACCFEEEEWRKLKS 261 (363)
Q Consensus 220 ~~~~H--agE~~-------~~~~i~----~~l~~g-~~rigHg~~~~~~~~~~l~~ 261 (363)
++.+| +|... +|+... +.++.| +.-||-|+..+|+-++.|++
T Consensus 271 pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~~~G~v~IIGGCCGTtPeHI~ala~ 326 (1229)
T PRK09490 271 YVSAHPNAGLPNAFGEYDETPEEMAAQIGEFAESGFLNIVGGCCGTTPEHIAAIAE 326 (1229)
T ss_pred eEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHH
Confidence 76666 44311 233322 333457 78899999999987766655
No 275
>TIGR01434 glu_cys_ligase glutamate--cysteine ligase. serve to protect against oxidative damage and participate in a biosynthetic or detoxification reactions.
Probab=47.31 E-value=29 Score=35.72 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=22.9
Q ss_pred HHHHHHhcCCeEEEEee-CCCccccCCCCHHH
Q 017943 81 VVEDFASENIVYLELRT-TPKRNESIGMSKRS 111 (363)
Q Consensus 81 ~~~~~~~~gV~y~E~r~-~p~~~~~~g~~~~~ 111 (363)
-++.+.+.||.|+|+|. +.......|++.++
T Consensus 310 ~l~aL~~~GVeYIEvR~lDlnPf~~~GI~~~q 341 (512)
T TIGR01434 310 PSDALLRRGIEYVEVRSLDINPFSPIGIDEQQ 341 (512)
T ss_pred hHHHHHhcCCcEEEEeeccCCCCCcCCCCHHH
Confidence 67888999999999993 32223456888765
No 276
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=47.22 E-value=1.3e+02 Score=30.17 Aligned_cols=155 Identities=13% Similarity=0.146 Sum_probs=89.4
Q ss_pred CCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhH
Q 017943 155 GKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEI 234 (363)
Q Consensus 155 ~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i 234 (363)
.+++.+.++-..+-+.+. ...|+++ .+.+|+-+. ..+...|..+..++.-|.++++.+.+|..-......+
T Consensus 187 ~~p~N~g~lgKGn~s~~~-~L~Eqi~-------aGa~GlKlH-EDWG~TpaaI~~~L~VAD~~DvqVaiHtDTLNEsGfv 257 (568)
T COG0804 187 GLPMNIGFLGKGNASNPA-PLAEQIE-------AGAIGLKLH-EDWGATPAAIDTCLSVADEYDVQVAIHTDTLNESGFV 257 (568)
T ss_pred cCceeeEEeecCCCCCch-hHHHHHh-------hccceeEee-cccCCCHHHHHHHHhhhhhhceEEEEeecccccccch
Confidence 345566666554444332 2223321 145676665 3344678889999999999999999998644333345
Q ss_pred HHHHhcCCCeeeEeccc-------CHHHHHHHhcCCCcE-EEccccccccccccC--------------------CCCcc
Q 017943 235 QSMLDFLPQRIGHACCF-------EEEEWRKLKSSKIPV-EICLTSNIRTETISS--------------------LDIHH 286 (363)
Q Consensus 235 ~~~l~~g~~rigHg~~~-------~~~~~~~l~~~~i~v-e~cPtSN~~l~~~~~--------------------~~~~p 286 (363)
.+.+..=..|.-|.++. .|+.++.....+|.- ..+||--...+.+.. +....
T Consensus 258 EdTi~A~~gRtIHtyHtEGAGGGHAPDiikv~~~~NvLPsSTNPT~PytvNT~~EhlDMlMVcHhL~p~ipeDvaFAeSR 337 (568)
T COG0804 258 EDTIAAIKGRTIHTYHTEGAGGGHAPDIIKVAGQPNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPRIPEDVAFAESR 337 (568)
T ss_pred HhHHHHhcCceeEEeeccCCCCCCccHHHHHccCCCcCcCCCCCCCCcccccHHHhhhhhhhhccCCCCCcchhhhhhhc
Confidence 55555445677787765 278888888887632 344442222111110 01111
Q ss_pred H--------HHHHHcCCCEEecCCCCCccC-C-ChHHHHHHH
Q 017943 287 F--------VDLYKAQHPLVLCTDDSGVFS-T-SVSREYDLA 318 (363)
Q Consensus 287 i--------~~l~~~Gv~v~l~TDd~~~~~-~-~l~~E~~~~ 318 (363)
+ .-|.+.|+--.++||.-++.. . -..+-|+.+
T Consensus 338 IR~eTIAAEdiLhDmGafSmisSDSQAMGRvGEvi~RtwQtA 379 (568)
T COG0804 338 IRPETIAAEDILHDMGAFSMISSDSQAMGRVGEVITRTWQTA 379 (568)
T ss_pred cchhhhhHHHHHhhccceEEeccchHhhhccchhhhhHHHHH
Confidence 1 135688887788999888776 3 344444444
No 277
>PRK02107 glutamate--cysteine ligase; Provisional
Probab=46.43 E-value=30 Score=35.65 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=22.9
Q ss_pred HHHHHHhcCCeEEEEee-CCCccccCCCCHHH
Q 017943 81 VVEDFASENIVYLELRT-TPKRNESIGMSKRS 111 (363)
Q Consensus 81 ~~~~~~~~gV~y~E~r~-~p~~~~~~g~~~~~ 111 (363)
-++.+.+.||.|+|+|. +.......|++.++
T Consensus 314 ~l~aL~~~GIeYIEvR~lDlNPf~~~GI~~~q 345 (523)
T PRK02107 314 PSDALARRGVEYIEVRSLDINPFSPIGIDEEQ 345 (523)
T ss_pred HHHHHHhcCCcEEEEeeccCCCCCcCCCCHHH
Confidence 67888999999999993 32223456888765
No 278
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=45.59 E-value=66 Score=29.71 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=13.4
Q ss_pred ChhhHHHHHHHHHHcCCceeee
Q 017943 203 EWTTFLPALKFAREQGLQITLH 224 (363)
Q Consensus 203 ~~~~~~~~~~~A~~~gl~~~~H 224 (363)
+.+.+.+++++|++.|+.+..=
T Consensus 54 ~~e~~~~L~~~~~~~gi~f~st 75 (241)
T PF03102_consen 54 SEEQHKELFEYCKELGIDFFST 75 (241)
T ss_dssp -HHHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCEEEEC
Confidence 5566777777777777665543
No 279
>PRK03739 2-isopropylmalate synthase; Validated
Probab=45.58 E-value=3.8e+02 Score=28.00 Aligned_cols=118 Identities=12% Similarity=0.132 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEE-EeeCCCCHHHHHHHHHHHH
Q 017943 105 IGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLL-SIDRRETTEAAMETVKLAL 183 (363)
Q Consensus 105 ~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~-~~~r~~~~e~~~~~~~~a~ 183 (363)
-+.+.+++++.+.+.++.+++.... ....++.+.+-. ...| .+++-..+.++.+.
T Consensus 140 l~~t~ee~l~~~~~~v~~a~~~~~~-----------------------~~~~~~~v~f~~EDasR-~d~~~l~~~~~~a~ 195 (552)
T PRK03739 140 FGKDRDGIKAIAVDGARLVKELAAK-----------------------YPETEWRFEYSPESFTG-TELDFALEVCDAVI 195 (552)
T ss_pred hCCCHHHHHHHHHHHHHHHHHhccc-----------------------ccCceeEEEEecccCCC-CCHHHHHHHHHHHH
Confidence 4788999999988888876531100 000112221111 1233 34677777877776
Q ss_pred hhCCCc---eEEEecCCCCCCCChhhHHHHHHHHHHc-----CCceeeecCCCCCh--hhHHHHHhcCCCeee
Q 017943 184 EMRDLG---VVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDFLPQRIG 246 (363)
Q Consensus 184 ~~~~~~---vvGidl~g~e~~~~~~~~~~~~~~A~~~-----gl~~~~HagE~~~~--~~i~~~l~~g~~rig 246 (363)
+....+ .+-++++..-....|..+...+...++. ++++.+|+.=..+- .+...+++.|++++.
T Consensus 196 ~~~~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaAv~aGa~~v~ 268 (552)
T PRK03739 196 DVWQPTPERKVILNLPATVEMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELALMAGADRVE 268 (552)
T ss_pred HhhcCCCCceeEEEeccCCcCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHHHHhCCCEEE
Confidence 542222 2224444222234677777777776553 57888888654443 345667788988865
No 280
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=45.22 E-value=2.7e+02 Score=27.35 Aligned_cols=87 Identities=15% Similarity=0.081 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEEEecCCC--CCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeee
Q 017943 169 RETTEAAMETVKLALEMRDLGVVGIDLSGN--PTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIG 246 (363)
Q Consensus 169 ~~~~e~~~~~~~~a~~~~~~~vvGidl~g~--e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rig 246 (363)
..++++..+.++.+.+. ++..|-+.|. +...+.+.+.++++..++.--.+++|++-. ..+.+...-+.|++|+-
T Consensus 103 ~ls~eEI~~~a~~~~~~---Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i~~g~l-t~e~l~~Lk~aGv~r~~ 178 (371)
T PRK09240 103 TLDEEEIEREMAAIKKL---GFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSVSIEVQPL-SEEEYAELVELGLDGVT 178 (371)
T ss_pred cCCHHHHHHHHHHHHhC---CCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCceeccCCC-CHHHHHHHHHcCCCEEE
Confidence 34666666666555443 4555555543 333456778888887776533456677633 23445444458999999
Q ss_pred Eeccc-CHHHHHHH
Q 017943 247 HACCF-EEEEWRKL 259 (363)
Q Consensus 247 Hg~~~-~~~~~~~l 259 (363)
|+... +++.++.+
T Consensus 179 i~lET~~~~~~~~i 192 (371)
T PRK09240 179 VYQETYNPATYAKH 192 (371)
T ss_pred EEEecCCHHHHHHh
Confidence 99865 45544444
No 281
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=44.86 E-value=1.8e+02 Score=29.23 Aligned_cols=113 Identities=18% Similarity=0.246 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHH---HHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 017943 69 TDHATVTRITQEVVE---DFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (363)
Q Consensus 69 ~~~e~~~~~~~~~~~---~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (363)
.+++.+.++++++.. |+++|- |...++.. .++++-+.++.++++++.+
T Consensus 145 lsp~~~a~~~y~~~~GGiD~IKDD----E~l~~q~~-----~p~~eRv~~~~~a~~~a~~-------------------- 195 (414)
T cd08206 145 LSPKEYARVVYEALRGGLDFVKDD----ENQNSQPF-----MRFEDRILFVAEAMDKAEA-------------------- 195 (414)
T ss_pred CCHHHHHHHHHHHHhcCCcccccC----ccCCCCCC-----CcHHHHHHHHHHHHHHHHH--------------------
Confidence 468888888887765 455444 33344322 3567788899999887643
Q ss_pred ccccccCCCCCCcEEEEEEEeeCCCC-HHHHHHHHHHHHhhCCCc-eEEEecCCCCCCCChhhHHHHHHHHHHcCCceee
Q 017943 146 MNDACNGTRGKKIYVRLLLSIDRRET-TEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITL 223 (363)
Q Consensus 146 ~~~~~~~~~~~gi~~~li~~~~r~~~-~e~~~~~~~~a~~~~~~~-vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~ 223 (363)
+.|-+.. +..+-+.+ .++..+-.+.+.+..... .+.+.+.| ..-+..+-+.+++.+++++.
T Consensus 196 ---------eTG~~~~--y~~NiT~~~~~em~~ra~~~~~~G~~~~mv~~~~~G------~~~l~~l~~~~~~~~l~ih~ 258 (414)
T cd08206 196 ---------ETGEAKG--HYLNITADTPEEMIKRAEFAKELGSVIVMVDGVTAG------WTAIQSARRWCPDNGLALHA 258 (414)
T ss_pred ---------hhCCcce--EEeccCCCcHHHHHHHHHHHHHhCCcEEEEeeeccc------HHHHHHHHHhccccCeEEEE
Confidence 3443333 33344444 677777777776653321 12222223 22344444444567899999
Q ss_pred ecCC
Q 017943 224 HCGE 227 (363)
Q Consensus 224 HagE 227 (363)
|-+=
T Consensus 259 HrA~ 262 (414)
T cd08206 259 HRAG 262 (414)
T ss_pred cccc
Confidence 9643
No 282
>PF12758 DUF3813: Protein of unknown function (DUF3813); InterPro: IPR024217 This entry represents a family of Bacillus proteins. Their function is unknown.
Probab=44.56 E-value=1e+02 Score=22.17 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=32.9
Q ss_pred CCChHHHHHHHHHHC-----CC-CHHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHH
Q 017943 308 STSVSREYDLAASAF-----SL-GRREMFQLAKSAVKFIFA--NGRVKEDLKEIFDL 356 (363)
Q Consensus 308 ~~~l~~E~~~~~~~~-----~l-~~~~l~~l~~na~~~sf~--~~~~K~~l~~~~~~ 356 (363)
+..|+.+.+.++..+ |- +..+....++|++.++|. ++.+|++|.+-=++
T Consensus 2 ~N~LFqqAr~aV~~a~~~~~~~~~~q~~i~rAKnAlsSAyanss~aE~~QL~q~Q~q 58 (63)
T PF12758_consen 2 GNRLFQQARDAVEQAVSAASGSEEQQKAIQRAKNALSSAYANSSDAEREQLRQFQDQ 58 (63)
T ss_pred cchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677777666522 22 445577889999999886 67888887754333
No 283
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=44.56 E-value=1.6e+02 Score=29.52 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEE---EEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 017943 69 TDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (363)
Q Consensus 69 ~~~e~~~~~~~~~~~~~~~~gV~y~---E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (363)
.+++.+.++++++.. -|+-++ |.-.++. -.++++-+.++.++++++.+
T Consensus 144 lsp~~~a~~~y~~~~----GGvD~iKDDE~l~~q~-----~~p~~~Rv~~~~~a~~~a~~-------------------- 194 (412)
T cd08213 144 LSPEEHAEVAYEALV----GGVDLVKDDENLTSQP-----FNRFEERAKESLKARDKAEA-------------------- 194 (412)
T ss_pred CCHHHHHHHHHHHHh----cCCcccccCccCCCCC-----CCCHHHHHHHHHHHHHHHHH--------------------
Confidence 367888887777654 444333 3333322 23567778888898887643
Q ss_pred ccccccCCCCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCc-eEEEecCCCCCCCChhhHHHHHHHHHHcCCceeee
Q 017943 146 MNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (363)
Q Consensus 146 ~~~~~~~~~~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~-vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~H 224 (363)
+.|-+..+.+.+ +.+.++..+..+.+.+...+. .+.+...| ..-+..+-+.+++.+++++.|
T Consensus 195 ---------eTG~~~~y~~Ni--T~~~~em~~ra~~a~e~G~~~~mv~~~~~G------~~~l~~l~~~~~~~~l~ihaH 257 (412)
T cd08213 195 ---------ETGERKAYLANI--TAPVREMERRAELVADLGGKYVMIDVVVAG------WSALQYLRDLAEDYGLAIHAH 257 (412)
T ss_pred ---------hhCCcceEEEEe--cCCHHHHHHHHHHHHHhCCCeEEeeccccC------hHHHHHHHHhccccCeEEEEC
Confidence 344444344433 345677777777777653321 11122222 233555555555778999999
Q ss_pred cCC
Q 017943 225 CGE 227 (363)
Q Consensus 225 agE 227 (363)
-+-
T Consensus 258 ra~ 260 (412)
T cd08213 258 RAM 260 (412)
T ss_pred CCc
Confidence 643
No 284
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=44.10 E-value=1.4e+02 Score=28.31 Aligned_cols=79 Identities=16% Similarity=0.116 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCCh-hhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEec
Q 017943 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEW-TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC 249 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~-~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~ 249 (363)
+|+++.+.++..- .+..-++|+-+..-+...| -.|..+-+..++.++|+.+|-|=..+.+.++.++..|...|--++
T Consensus 157 ~peeA~~Fv~~Tg--vD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T 234 (285)
T PRK07709 157 DPAECKHLVEATG--IDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNT 234 (285)
T ss_pred CHHHHHHHHHHhC--CCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCh
Confidence 5777777665431 0111244544433333323 346666666667799999998855555778888889987776666
Q ss_pred cc
Q 017943 250 CF 251 (363)
Q Consensus 250 ~~ 251 (363)
.+
T Consensus 235 ~l 236 (285)
T PRK07709 235 EN 236 (285)
T ss_pred HH
Confidence 54
No 285
>PLN02599 dihydroorotase
Probab=43.97 E-value=1.4e+02 Score=29.37 Aligned_cols=154 Identities=18% Similarity=0.145 Sum_probs=79.5
Q ss_pred ceE-EEecCC--CCC----C-CChhhHHHHHHHHHHcCCceeeecCCCCCh------h--hHHHHHh--c--CCCeeeEe
Q 017943 189 GVV-GIDLSG--NPT----K-GEWTTFLPALKFAREQGLQITLHCGEIPNK------E--EIQSMLD--F--LPQRIGHA 248 (363)
Q Consensus 189 ~vv-Gidl~g--~e~----~-~~~~~~~~~~~~A~~~gl~~~~HagE~~~~------~--~i~~~l~--~--g~~rigHg 248 (363)
|++ ||-+.. ... . .+...+.++++.+++.|+++.+|+...... + .+..++. + -+.-=-|-
T Consensus 112 Gvv~gfKlyp~~~tt~s~~gv~d~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~~~E~~~i~r~l~~~la~~~g~kI~i 191 (364)
T PLN02599 112 GVVFAVKLYPAGATTNSQAGVTDLGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIFDREKVFIDTILAPLVQKLPQLKIVM 191 (364)
T ss_pred CCcEEEEECcccCcCCCccccCCHHHHHHHHHHHHhcCCEEEEecCCCcccccccccHHHHHHHHHHHHHHhccCCeEEE
Confidence 677 887642 111 1 124678899999999999999998642211 1 1212231 1 12111244
Q ss_pred ccc-CHHHHHHHhc--C-CCcEEEcccc-----cccc-ccccC-C-CCccH---------HHHHHcCCC-EEecCCCCCc
Q 017943 249 CCF-EEEEWRKLKS--S-KIPVEICLTS-----NIRT-ETISS-L-DIHHF---------VDLYKAQHP-LVLCTDDSGV 306 (363)
Q Consensus 249 ~~~-~~~~~~~l~~--~-~i~ve~cPtS-----N~~l-~~~~~-~-~~~pi---------~~l~~~Gv~-v~l~TDd~~~ 306 (363)
.++ +.+-++.+++ . +|..|+||-- +... +.... + -.+|+ .+.+..|.. ..|+||-...
T Consensus 192 ~HiSt~~~ve~v~~ak~~~vtae~tpHhL~l~~~~~~~~~~~~~~k~~PPlR~~~dr~aL~~al~~G~i~~~i~SDHaPh 271 (364)
T PLN02599 192 EHITTMDAVEFVESCGDGNVAATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPH 271 (364)
T ss_pred EecChHHHHHHHHhccCCCEEEEecHHHHhcCHHHHhccCCCCCeEEECCCCCHHHHHHHHHHHHcCCCCEEEecCCCCC
Confidence 444 3444555543 2 6889999951 1111 00010 0 11343 344567886 6899995422
Q ss_pred c--------C-CChHH------HHHHHHHHCCCCHHHHHHH-HHHHHHHcCCC
Q 017943 307 F--------S-TSVSR------EYDLAASAFSLGRREMFQL-AKSAVKFIFAN 343 (363)
Q Consensus 307 ~--------~-~~l~~------E~~~~~~~~~l~~~~l~~l-~~na~~~sf~~ 343 (363)
. + .++.. -+.......| +.+++.++ +.|+.+.--++
T Consensus 272 ~~~~K~~~~g~~Gi~~~~~~l~~l~~~~~~~g-~l~~l~~~~S~npA~~~gL~ 323 (364)
T PLN02599 272 PKRAKEASCGCAGIYSAPVALSLYAKAFEEAG-ALDKLEAFTSFNGPDFYGLP 323 (364)
T ss_pred ChHHhcCCCCCCCcccHHHHHHHHHHHHHhcC-CHHHHHHHHhHHHHHHhCCC
Confidence 1 1 11111 1222222235 77886655 58888877664
No 286
>PRK13404 dihydropyrimidinase; Provisional
Probab=43.75 E-value=1.8e+02 Score=29.62 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=27.1
Q ss_pred ceEEEecC--CCCCCCChhhHHHHHHHHHHcCCceeeecC
Q 017943 189 GVVGIDLS--GNPTKGEWTTFLPALKFAREQGLQITLHCG 226 (363)
Q Consensus 189 ~vvGidl~--g~e~~~~~~~~~~~~~~A~~~gl~~~~Hag 226 (363)
++.+|-+. +.....+.+.+.++++.|+++|+++.+|+-
T Consensus 148 G~~~iKi~~~~~~~~~~~~~l~~~~~~a~~~g~~V~~Hae 187 (477)
T PRK13404 148 GYTSFKVFMTYDDLKLDDRQILDVLAVARRHGAMVMVHAE 187 (477)
T ss_pred CCCEEEEEecCCCCCCCHHHHHHHHHHHHhcCCEEEEEeC
Confidence 45555542 222234567899999999999999999984
No 287
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=43.57 E-value=2.1e+02 Score=24.60 Aligned_cols=113 Identities=16% Similarity=0.195 Sum_probs=58.0
Q ss_pred eEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcC-CCeeeEecccCHHHHHHHhcCCCcEEE
Q 017943 190 VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFL-PQRIGHACCFEEEEWRKLKSSKIPVEI 268 (363)
Q Consensus 190 vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g-~~rigHg~~~~~~~~~~l~~~~i~ve~ 268 (363)
+.++.+.|.|....++ +.++.+.+++.|+.+.+...=. .++.+...++.| .+.+.=.+...++....+....-...
T Consensus 63 ~~~i~~sGGEPll~~~-l~~li~~~~~~g~~v~i~TNg~-~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~- 139 (191)
T TIGR02495 63 IDGVVITGGEPTLQAG-LPDFLRKVRELGFEVKLDTNGS-NPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGS- 139 (191)
T ss_pred CCeEEEECCcccCcHh-HHHHHHHHHHCCCeEEEEeCCC-CHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchH-
Confidence 4566777766554444 8888899999898777764322 233344444455 35442222223343333322111100
Q ss_pred ccccccccccccCCCCccHHHHHHcCCCEEecCC-CCCccCCChHHHHHHHHH
Q 017943 269 CLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTD-DSGVFSTSVSREYDLAAS 320 (363)
Q Consensus 269 cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TD-d~~~~~~~l~~E~~~~~~ 320 (363)
+.. ..-+..+.+.|+++.|+|= .|+.. + .+|+..+++
T Consensus 140 ----~~~--------~~~i~~l~~~gi~~~i~~~v~~~~~--~-~~ei~~~~~ 177 (191)
T TIGR02495 140 ----NNI--------LKSLEILLRSGIPFELRTTVHRGFL--D-EEDLAEIAT 177 (191)
T ss_pred ----HHH--------HHHHHHHHHcCCCEEEEEEEeCCCC--C-HHHHHHHHH
Confidence 001 1235677788998888763 22222 2 346655554
No 288
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=42.85 E-value=2e+02 Score=24.00 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=46.2
Q ss_pred ceEEEecCCCCCCCChhhHHHHHHHHHHc--CCceeeecCCCC-ChhhHHHHHhcCCCeeeEeccc-CHHHHHHHh
Q 017943 189 GVVGIDLSGNPTKGEWTTFLPALKFAREQ--GLQITLHCGEIP-NKEEIQSMLDFLPQRIGHACCF-EEEEWRKLK 260 (363)
Q Consensus 189 ~vvGidl~g~e~~~~~~~~~~~~~~A~~~--gl~~~~HagE~~-~~~~i~~~l~~g~~rigHg~~~-~~~~~~~l~ 260 (363)
++..+-+.|.+....+ .+..+++.+++. ++.+.++..-.. +++.+....+.|..++..++.. ++...+.+.
T Consensus 44 ~~~~i~~~ggep~~~~-~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~ 118 (204)
T cd01335 44 GVEVVILTGGEPLLYP-ELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIR 118 (204)
T ss_pred CceEEEEeCCcCCccH-hHHHHHHHHHhhCCCceEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHh
Confidence 3455555555444444 788888888887 888888875333 3444455556788999999865 555555554
No 289
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=42.22 E-value=2.7e+02 Score=25.77 Aligned_cols=90 Identities=14% Similarity=-0.004 Sum_probs=53.7
Q ss_pred HHHHhhCCCceEEEecCCCCCCCC-hhhHHHHHHHHHHc-CCceeeecCCCCChhhHHHHHhc--CCCeeeEeccc----
Q 017943 180 KLALEMRDLGVVGIDLSGNPTKGE-WTTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDF--LPQRIGHACCF---- 251 (363)
Q Consensus 180 ~~a~~~~~~~vvGidl~g~e~~~~-~~~~~~~~~~A~~~-gl~~~~HagE~~~~~~i~~~l~~--g~~rigHg~~~---- 251 (363)
+.+.++...|..-+|+.+.+...+ .+.+.++....++. ++++.+-. ..++.+..+++. |++-|---...
T Consensus 30 ~~A~~~~~~GAdiIDIG~~~~~~~~~ee~~r~v~~i~~~~~~piSIDT---~~~~v~e~aL~~~~G~~iINsIs~~~~~e 106 (252)
T cd00740 30 DVARQQVEGGAQILDLNVDYGGLDGVSAMKWLLNLLATEPTVPLMLDS---TNWEVIEAGLKCCQGKCVVNSINLEDGEE 106 (252)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCcEEeeC---CcHHHHHHHHhhCCCCcEEEeCCCCCCcc
Confidence 333333334555666665443322 35566666656654 78877644 456667778876 76544332222
Q ss_pred -CHHHHHHHhcCCCcEEEcccc
Q 017943 252 -EEEEWRKLKSSKIPVEICLTS 272 (363)
Q Consensus 252 -~~~~~~~l~~~~i~ve~cPtS 272 (363)
.+..++.+++.|.++.+.+..
T Consensus 107 ~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 107 RFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred ccHHHHHHHHHhCCCEEEeccC
Confidence 245668889999999888864
No 290
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=42.18 E-value=1.4e+02 Score=27.40 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=45.9
Q ss_pred ChhhHHHHHHHHHHcCCceeeecC--CCCCh-hhHHHHHhcCCCee-eEecccC-----HHHHHHHhcCCCcEEEccccc
Q 017943 203 EWTTFLPALKFAREQGLQITLHCG--EIPNK-EEIQSMLDFLPQRI-GHACCFE-----EEEWRKLKSSKIPVEICLTSN 273 (363)
Q Consensus 203 ~~~~~~~~~~~A~~~gl~~~~Hag--E~~~~-~~i~~~l~~g~~ri-gHg~~~~-----~~~~~~l~~~~i~ve~cPtSN 273 (363)
+.+.+.++.+.|. |+.+|+|-+ +..++ +.+..++++|..|| -||-..+ +.+.+++...+=.+.+-|-+-
T Consensus 102 D~~~le~Li~aA~--gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsGg~~sa~eg~~~l~~li~~a~gri~Im~GaG 179 (241)
T COG3142 102 DMPRLEKLIEAAG--GLGVTFHRAFDECPDPLEALEQLIELGVERILTSGGKASALEGLDLLKRLIEQAKGRIIIMAGAG 179 (241)
T ss_pred CHHHHHHHHHHcc--CCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCCCcCchhhhHHHHHHHHHHhcCCEEEEeCCC
Confidence 4566777777665 999999975 44454 34556778999985 6776543 344556666666666666554
Q ss_pred cc
Q 017943 274 IR 275 (363)
Q Consensus 274 ~~ 275 (363)
+.
T Consensus 180 V~ 181 (241)
T COG3142 180 VR 181 (241)
T ss_pred CC
Confidence 43
No 291
>PF04262 Glu_cys_ligase: Glutamate-cysteine ligase ; InterPro: IPR007370 This is a group of bacterial glutamate-cysteine ligases that carry out the first step of the glutathione biosynthesis pathway according to the following equation: ATP + L-glutamate + L-cysteine = ADP + phosphate + L-glutamyl-L-cysteine (L-aminohexanoate can replace glutamate). ; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 3LN6_A 3LN7_B 1VA6_B 2D33_B 1V4G_B 2D32_A 3NZT_A.
Probab=42.02 E-value=23 Score=34.95 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCeEEEEee-CCCccccCCCCHHH
Q 017943 80 EVVEDFASENIVYLELRT-TPKRNESIGMSKRS 111 (363)
Q Consensus 80 ~~~~~~~~~gV~y~E~r~-~p~~~~~~g~~~~~ 111 (363)
.-++.+.++||.|+|+|. +.......|++.++
T Consensus 310 ~~l~~L~~~Gi~YiE~R~lDlnPf~~~GI~~~~ 342 (377)
T PF04262_consen 310 RPLDALLRRGIEYIELRSLDLNPFSPIGISEDQ 342 (377)
T ss_dssp SCHHHHHHH---EEEEEEEE--TTSTTSS-HHH
T ss_pred chHHHHHhcCCeEEEEeeccCCCCCcCCCCHHH
Confidence 357888999999999993 32223456888664
No 292
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=41.92 E-value=1.7e+02 Score=29.78 Aligned_cols=113 Identities=15% Similarity=0.189 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEE---EEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 017943 69 TDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (363)
Q Consensus 69 ~~~e~~~~~~~~~~~~~~~~gV~y~---E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (363)
.+++.+.++++++. .-|+-++ |...++. -.++++-+.++.++++++.+
T Consensus 173 Lsp~~~a~~~y~~~----~GGvD~IKDDE~l~~q~-----f~p~~~Rv~~~~~a~~~a~~-------------------- 223 (468)
T PRK04208 173 LSAKNYGRVVYEAL----RGGLDFTKDDENLNSQP-----FNRWRDRFLFVMEAIDKAEA-------------------- 223 (468)
T ss_pred CCHHHHHHHHHHHH----hcCCceeeCCCCCCCCC-----CccHHHHHHHHHHHHHHHHH--------------------
Confidence 36788887777765 4454444 3333322 23567778888888887643
Q ss_pred ccccccCCCCCCcEEEEEEEeeCCCC-HHHHHHHHHHHHhhCCCc-eEEEecCCCCCCCChhhHHHHHHHHHHcCCceee
Q 017943 146 MNDACNGTRGKKIYVRLLLSIDRRET-TEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITL 223 (363)
Q Consensus 146 ~~~~~~~~~~~gi~~~li~~~~r~~~-~e~~~~~~~~a~~~~~~~-vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~ 223 (363)
+.|-...+. ++-+.+ .++..+-.+.+.+..... .+.+.+.| ..-+..+-+.|+..+++++.
T Consensus 224 ---------eTG~~k~y~--~NiT~~~~~em~~ra~~~~e~G~~~~mv~~~~~G------~~~l~~l~~~~~~~~l~Iha 286 (468)
T PRK04208 224 ---------ETGERKGHY--LNVTAPTMEEMYKRAEFAKELGSPIVMIDVVTAG------WTALQSLREWCRDNGLALHA 286 (468)
T ss_pred ---------hhCCcceEE--EecCCCCHHHHHHHHHHHHHhCCCEEEEeccccc------cHHHHHHHHhhhcCCcEEEe
Confidence 344333333 343444 667777777776653221 12222222 23356666666778999999
Q ss_pred ecCC
Q 017943 224 HCGE 227 (363)
Q Consensus 224 HagE 227 (363)
|-+=
T Consensus 287 HrA~ 290 (468)
T PRK04208 287 HRAM 290 (468)
T ss_pred cCCc
Confidence 9643
No 293
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=41.82 E-value=3.2e+02 Score=26.15 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCC--eEEEEeeCC
Q 017943 70 DHATVTRITQEVVEDFASENI--VYLELRTTP 99 (363)
Q Consensus 70 ~~e~~~~~~~~~~~~~~~~gV--~y~E~r~~p 99 (363)
+.+++++..++.++-+...|+ ..+|+.+++
T Consensus 137 ~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~ 168 (311)
T COG0646 137 TFDELVEAYREQVEGLIDGGADLILIETIFDT 168 (311)
T ss_pred cHHHHHHHHHHHHHHHHhCCCcEEEEehhccH
Confidence 467888999999999999999 789998883
No 294
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=41.52 E-value=1.3e+02 Score=29.28 Aligned_cols=98 Identities=11% Similarity=0.140 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHhhCCCc-eEEEecCCCCCC-CChhhHHHHHHHHHHcCCceeeecCCCC------ChhhHHHHHhcCC
Q 017943 171 TTEAAMETVKLALEMRDLG-VVGIDLSGNPTK-GEWTTFLPALKFAREQGLQITLHCGEIP------NKEEIQSMLDFLP 242 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~-vvGidl~g~e~~-~~~~~~~~~~~~A~~~gl~~~~HagE~~------~~~~i~~~l~~g~ 242 (363)
..+.-...++.+..+.-+. +.++... .+.. .-...|.++...|++.|+.+.+-+.=+- +...+....++|.
T Consensus 14 ~~~~~~~Yi~~~~~~Gf~~IFtsl~~~-~~~~~~~~~~~~ell~~Anklg~~vivDvnPsil~~l~~S~~~l~~f~e~G~ 92 (360)
T COG3589 14 PKEKDIAYIDRMHKYGFKRIFTSLLIP-EEDAELYFHRFKELLKEANKLGLRVIVDVNPSILKELNISLDNLSRFQELGV 92 (360)
T ss_pred cchhHHHHHHHHHHcCccceeeecccC-CchHHHHHHHHHHHHHHHHhcCcEEEEEcCHHHHhhcCCChHHHHHHHHhhh
Confidence 3456677888888874322 2333222 2221 1235688899999999999998873110 0112333344665
Q ss_pred --CeeeEecccCHHHHHHHhcCCCcEEEccc
Q 017943 243 --QRIGHACCFEEEEWRKLKSSKIPVEICLT 271 (363)
Q Consensus 243 --~rigHg~~~~~~~~~~l~~~~i~ve~cPt 271 (363)
-|++||+. -+.+..|...+..++++++
T Consensus 93 ~glRlD~gfS--~eei~~ms~~~lkieLN~S 121 (360)
T COG3589 93 DGLRLDYGFS--GEEIAEMSKNPLKIELNAS 121 (360)
T ss_pred hheeecccCC--HHHHHHHhcCCeEEEEchh
Confidence 58899874 4567777777788888875
No 295
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=41.43 E-value=2.3e+02 Score=26.09 Aligned_cols=54 Identities=28% Similarity=0.309 Sum_probs=36.1
Q ss_pred HHHHHHHHhhCCCceEEEecCCCCCC---CChhhHHHHHHH-HHHcCCceeeecCCCC
Q 017943 176 METVKLALEMRDLGVVGIDLSGNPTK---GEWTTFLPALKF-AREQGLQITLHCGEIP 229 (363)
Q Consensus 176 ~~~~~~a~~~~~~~vvGidl~g~e~~---~~~~~~~~~~~~-A~~~gl~~~~HagE~~ 229 (363)
.+.+..++++..+|..|+=++|.-.. .|...|...... -.++|+.+.+|.|-..
T Consensus 42 ~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~~l~inaHvGfvd 99 (275)
T COG1856 42 KSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERTGLLINAHVGFVD 99 (275)
T ss_pred HHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHHHHHHHHHHHhhCeEEEEEeeecc
Confidence 44556666666678889888875332 355666655554 4557999999998554
No 296
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=41.32 E-value=2.7e+02 Score=25.03 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=57.9
Q ss_pred EEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCC
Q 017943 164 LSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQ 243 (363)
Q Consensus 164 ~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~ 243 (363)
+.+.|..+++.+.+.++.+.+- ++-.+.+.- .++.-+..+-+..++++ .+.+=+|-..+++...++++.|++
T Consensus 11 iaVlr~~~~e~a~~~~~al~~~---Gi~~iEit~----~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~aGA~ 82 (204)
T TIGR01182 11 VPVIRIDDVDDALPLAKALIEG---GLRVLEVTL----RTPVALDAIRLLRKEVP-DALIGAGTVLNPEQLRQAVDAGAQ 82 (204)
T ss_pred EEEEecCCHHHHHHHHHHHHHc---CCCEEEEeC----CCccHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCC
Confidence 4457888888888887776654 333333321 12233333333334444 466667766677778888888887
Q ss_pred eeeEecccCHHHHHHHhcCCCcE
Q 017943 244 RIGHACCFEEEEWRKLKSSKIPV 266 (363)
Q Consensus 244 rigHg~~~~~~~~~~l~~~~i~v 266 (363)
=|-- -.+++++++..+++++++
T Consensus 83 Fivs-P~~~~~v~~~~~~~~i~~ 104 (204)
T TIGR01182 83 FIVS-PGLTPELAKHAQDHGIPI 104 (204)
T ss_pred EEEC-CCCCHHHHHHHHHcCCcE
Confidence 6521 124778888888888876
No 297
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.28 E-value=2.6e+02 Score=24.99 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=57.6
Q ss_pred EEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCC
Q 017943 164 LSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQ 243 (363)
Q Consensus 164 ~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~ 243 (363)
+.+.|..+++.+.+.++.+.+- ++-.+.+.- .++.-+..+-+..++++ .+.+=+|-..+.+..+++++.|++
T Consensus 7 v~Vir~~~~~~a~~ia~al~~g---Gi~~iEit~----~tp~a~~~I~~l~~~~~-~~~vGAGTVl~~e~a~~ai~aGA~ 78 (201)
T PRK06015 7 IPVLLIDDVEHAVPLARALAAG---GLPAIEITL----RTPAALDAIRAVAAEVE-EAIVGAGTILNAKQFEDAAKAGSR 78 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHHHC---CCCEEEEeC----CCccHHHHHHHHHHHCC-CCEEeeEeCcCHHHHHHHHHcCCC
Confidence 3456888888888887776653 344444432 12233333333344443 466666766677778888888876
Q ss_pred eeeEecccCHHHHHHHhcCCCcE
Q 017943 244 RIGHACCFEEEEWRKLKSSKIPV 266 (363)
Q Consensus 244 rigHg~~~~~~~~~~l~~~~i~v 266 (363)
=+--= .+++++++..+++++++
T Consensus 79 FivSP-~~~~~vi~~a~~~~i~~ 100 (201)
T PRK06015 79 FIVSP-GTTQELLAAANDSDVPL 100 (201)
T ss_pred EEECC-CCCHHHHHHHHHcCCCE
Confidence 53211 25778888888888876
No 298
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=41.26 E-value=75 Score=29.30 Aligned_cols=64 Identities=25% Similarity=0.521 Sum_probs=42.3
Q ss_pred HHHHHHHHhhCCCceE-------------EEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCC
Q 017943 176 METVKLALEMRDLGVV-------------GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP 242 (363)
Q Consensus 176 ~~~~~~a~~~~~~~vv-------------Gidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~ 242 (363)
.++++.+++.+++.++ |+|+. ...+.++++.+..++.|+++.+-.. .+++.+..+.++|+
T Consensus 74 ~e~~~ia~~~kP~~vtLVPE~r~e~TTegGldv~-----~~~~~l~~~i~~L~~~gIrvSLFiD--P~~~qi~~A~~~Ga 146 (239)
T PF03740_consen 74 EEMVDIALKVKPDQVTLVPEKREELTTEGGLDVA-----GNRDRLKPVIKRLKDAGIRVSLFID--PDPEQIEAAKELGA 146 (239)
T ss_dssp HHHHHHHHHH--SEEEEE--SGGGBSTTSSB-TC-----GGHHHHHHHHHHHHHTT-EEEEEE---S-HHHHHHHHHTT-
T ss_pred HHHHHHHHhCCcCEEEECCCCCCCcCCCcCChhh-----cCHHHHHHHHHHHHhCCCEEEEEeC--CCHHHHHHHHHcCC
Confidence 5688888888776332 22222 2346788899999999999999883 34567788888999
Q ss_pred Ceee
Q 017943 243 QRIG 246 (363)
Q Consensus 243 ~rig 246 (363)
++|.
T Consensus 147 d~VE 150 (239)
T PF03740_consen 147 DRVE 150 (239)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9985
No 299
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=41.19 E-value=19 Score=30.41 Aligned_cols=26 Identities=38% Similarity=0.648 Sum_probs=20.4
Q ss_pred chhccc-----cCCCCCHHHHHHHHHHhccCCCC
Q 017943 10 VELHAH-----LNGSIRDSTLLELARVLGEKGVI 38 (363)
Q Consensus 10 ~eLH~H-----L~Gsi~~~~l~~la~~~~~~~~~ 38 (363)
||||+| ++|..+++.+.+.|+ +.|+.
T Consensus 1 iDlH~HT~~s~~dg~~~~~e~v~~A~---~~Gl~ 31 (175)
T PF02811_consen 1 IDLHVHTKYSILDGKDSPEEYVEQAK---EKGLD 31 (175)
T ss_dssp EEEEB--TTTSSTSSSSHHHHHHHHH---HTTES
T ss_pred CCccccccCcchhhcCCHHHHHHHHH---HcCCC
Confidence 689999 578899999999998 46664
No 300
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=41.12 E-value=2.9e+02 Score=25.36 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCeEEEEeeCC
Q 017943 79 QEVVEDFASENIVYLELRTTP 99 (363)
Q Consensus 79 ~~~~~~~~~~gV~y~E~r~~p 99 (363)
.+.++.+++-|..++|+.+.+
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~ 39 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDE 39 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCC
Confidence 457788889999999998764
No 301
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=40.82 E-value=4.4e+02 Score=27.86 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCC--eEEEEeeC
Q 017943 70 DHATVTRITQEVVEDFASENI--VYLELRTT 98 (363)
Q Consensus 70 ~~e~~~~~~~~~~~~~~~~gV--~y~E~r~~ 98 (363)
+.+++++.-++.++-+...|| ..+|+..+
T Consensus 119 ~~~~~~~~~~~~~~~l~~~gvD~l~~ET~~~ 149 (612)
T PRK08645 119 SLEEIRREFREQIDALLEEGVDGLLLETFYD 149 (612)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 467777777777888878877 56666655
No 302
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=40.68 E-value=1.8e+02 Score=27.46 Aligned_cols=79 Identities=15% Similarity=0.075 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCCh-hhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEec
Q 017943 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEW-TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC 249 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~-~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~ 249 (363)
+|+++.+.++..- -+..=++|+-+...+...| -.|..+-+..+..++|+.+|-|=..+.+.++.++..|...|--++
T Consensus 154 ~peea~~Fv~~Tg--vD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 231 (282)
T TIGR01858 154 DPQEAKEFVEATG--VDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVAT 231 (282)
T ss_pred CHHHHHHHHHHHC--cCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 4566666655330 0111233443333333333 446666666667799999998865566778888889987777666
Q ss_pred cc
Q 017943 250 CF 251 (363)
Q Consensus 250 ~~ 251 (363)
.+
T Consensus 232 ~l 233 (282)
T TIGR01858 232 EL 233 (282)
T ss_pred HH
Confidence 55
No 303
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=40.52 E-value=2.2e+02 Score=29.15 Aligned_cols=113 Identities=15% Similarity=0.093 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEE---EEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 017943 69 TDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (363)
Q Consensus 69 ~~~e~~~~~~~~~~~~~~~~gV~y~---E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (363)
.+++.+.++++++. .-||-++ |.-.++. -.++++-+.++.++++++.+
T Consensus 180 Lsp~~~A~~~y~~~----~GGvD~IKDDE~l~dq~-----~~p~~eRv~~~~~a~~~a~~-------------------- 230 (475)
T CHL00040 180 LSAKNYGRAVYECL----RGGLDFTKDDENVNSQP-----FMRWRDRFLFCAEAIYKAQA-------------------- 230 (475)
T ss_pred CCHHHHHHHHHHHH----cCCCcccccCccCCCCC-----CCCHHHHHHHHHHHHHHHHH--------------------
Confidence 36788877777664 4555444 3333332 24567788899999887643
Q ss_pred ccccccCCCCCCcEEEEEEEeeCC-CCHHHHHHHHHHHHhhCCCc-eEEEecCCCCCCCChhhHHHHHHHHHHcCCceee
Q 017943 146 MNDACNGTRGKKIYVRLLLSIDRR-ETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITL 223 (363)
Q Consensus 146 ~~~~~~~~~~~gi~~~li~~~~r~-~~~e~~~~~~~~a~~~~~~~-vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~ 223 (363)
+.|-+. ++.++-+ .++++..+-.+.+.+..... .+.+.+.| ..-+..+-+.|++.+++++.
T Consensus 231 ---------eTG~~~--~y~~NiTa~~~~em~~ra~~a~e~G~~~~mv~~~~~G------~~al~~l~~~~~~~~l~Iha 293 (475)
T CHL00040 231 ---------ETGEIK--GHYLNATAGTCEEMYKRAVFARELGVPIVMHDYLTGG------FTANTSLAHYCRDNGLLLHI 293 (475)
T ss_pred ---------hhCCcc--eeeeccCCCCHHHHHHHHHHHHHcCCceEEEeccccc------cchHHHHHHHhhhcCceEEe
Confidence 344322 2233545 35777777777777753321 12222223 23366666667788999999
Q ss_pred ecCC
Q 017943 224 HCGE 227 (363)
Q Consensus 224 HagE 227 (363)
|-+=
T Consensus 294 HrA~ 297 (475)
T CHL00040 294 HRAM 297 (475)
T ss_pred cccc
Confidence 9643
No 304
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=39.77 E-value=3e+02 Score=25.17 Aligned_cols=21 Identities=10% Similarity=0.022 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCeEEEEeeC
Q 017943 78 TQEVVEDFASENIVYLELRTT 98 (363)
Q Consensus 78 ~~~~~~~~~~~gV~y~E~r~~ 98 (363)
..+.++.+++-|..++|+...
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~ 35 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGG 35 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccC
Confidence 456788889999999999754
No 305
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=39.64 E-value=37 Score=28.32 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=12.7
Q ss_pred HHHHHHhcCCeEEEEeeC
Q 017943 81 VVEDFASENIVYLELRTT 98 (363)
Q Consensus 81 ~~~~~~~~gV~y~E~r~~ 98 (363)
-+.+....||+|+|+|+.
T Consensus 31 ~i~~QL~~GiR~lDlrv~ 48 (146)
T PF00388_consen 31 SIREQLESGIRYLDLRVW 48 (146)
T ss_dssp HHHHHHHTT--EEEEEEE
T ss_pred hHHHHHhccCceEEEEEE
Confidence 455566789999999987
No 306
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=39.63 E-value=4.1e+02 Score=26.71 Aligned_cols=144 Identities=15% Similarity=0.109 Sum_probs=75.4
Q ss_pred eCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChh-h-------HHHHH
Q 017943 167 DRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKE-E-------IQSML 238 (363)
Q Consensus 167 ~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~-~-------i~~~l 238 (363)
-|+.+.+....-++.+.+..-+.+.-|| ..+++..++...+.++++|.++..-..=+.+|- . ..+.+
T Consensus 92 YrhyaDDvVe~Fv~ka~~nGidvfRiFD-----AlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~ 166 (472)
T COG5016 92 YRHYADDVVEKFVEKAAENGIDVFRIFD-----ALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELL 166 (472)
T ss_pred ccCCchHHHHHHHHHHHhcCCcEEEech-----hccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHH
Confidence 4777777777777777766222222233 235678899999999999985543333233331 1 23455
Q ss_pred hcCCCeee----EecccCH----HHHHHHhcC-CCcEEEccccccccccccCCCCccHHHHHHcCCCE---EecCCCCCc
Q 017943 239 DFLPQRIG----HACCFEE----EEWRKLKSS-KIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPL---VLCTDDSGV 306 (363)
Q Consensus 239 ~~g~~rig----Hg~~~~~----~~~~~l~~~-~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v---~l~TDd~~~ 306 (363)
++|++.|. -|+ ++| ++++.+++. ++++.+ .+-..+++..--.-+..++|+-+ +|++=..+.
T Consensus 167 ~~g~DSIciKDmaGl-ltP~~ayelVk~iK~~~~~pv~l------HtH~TsG~a~m~ylkAvEAGvD~iDTAisp~S~gt 239 (472)
T COG5016 167 EMGVDSICIKDMAGL-LTPYEAYELVKAIKKELPVPVEL------HTHATSGMAEMTYLKAVEAGVDGIDTAISPLSGGT 239 (472)
T ss_pred HcCCCEEEeeccccc-CChHHHHHHHHHHHHhcCCeeEE------ecccccchHHHHHHHHHHhCcchhhhhhccccCCC
Confidence 68998763 233 333 566666554 565532 22222223322344557888753 333222222
Q ss_pred cCCChHHHHHHHHHHCC
Q 017943 307 FSTSVSREYDLAASAFS 323 (363)
Q Consensus 307 ~~~~l~~E~~~~~~~~~ 323 (363)
+. .-++-|..+.+..+
T Consensus 240 sq-P~tEtmv~aL~gt~ 255 (472)
T COG5016 240 SQ-PATETMVAALRGTG 255 (472)
T ss_pred CC-CcHHHHHHHhcCCC
Confidence 21 23344555555433
No 307
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=39.33 E-value=43 Score=29.68 Aligned_cols=74 Identities=12% Similarity=0.095 Sum_probs=51.2
Q ss_pred CeeeEecccCHH--HHHHHhcCCCcEEEccccccccccccCCCCccHHHHH-HcCCC-EEecCCCCCccCCChHHHHHHH
Q 017943 243 QRIGHACCFEEE--EWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLY-KAQHP-LVLCTDDSGVFSTSVSREYDLA 318 (363)
Q Consensus 243 ~rigHg~~~~~~--~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~-~~Gv~-v~l~TDd~~~~~~~l~~E~~~~ 318 (363)
-++.||+.-+.- ..+..-+.+.++.++|..|..+.. ....+..|+ ..|+. |-.|-|||.--..+|.-.+.+.
T Consensus 94 AKiA~GiaDnlv~~aa~a~Lke~rPlvlaPamN~~m~~----~~~Ni~~L~~~~g~~~v~f~qd~~~~k~~s~~~~~~~~ 169 (187)
T TIGR02852 94 SKLANAMTDSPVLMAAKATLRNNKPVVLAISTNDALGL----NAVNLMRLLNTKNIYFVPFGQDDPFKKPNSLVAKMDYL 169 (187)
T ss_pred HHHHccccCcHHHHHHHHHhcCCCCEEEEECcCHHHHh----CHHHHHHHHHcCCEEEEeecCCCCCCCchhHHhhHHhh
Confidence 356788754421 122222467899999999988863 124577876 88885 7899999987778888777665
Q ss_pred HH
Q 017943 319 AS 320 (363)
Q Consensus 319 ~~ 320 (363)
..
T Consensus 170 ~~ 171 (187)
T TIGR02852 170 IP 171 (187)
T ss_pred HH
Confidence 44
No 308
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=39.33 E-value=2.6e+02 Score=27.88 Aligned_cols=111 Identities=13% Similarity=0.028 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHH---HHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 017943 69 TDHATVTRITQEVVE---DFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (363)
Q Consensus 69 ~~~e~~~~~~~~~~~---~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (363)
.+++.+.++++++.. |++||- |.-.++.. .++++-+.++.++++++.+
T Consensus 137 lsp~~~a~~~y~~~~GGvD~IKDD----E~l~~q~~-----~p~~eRv~a~~~a~~~a~~-------------------- 187 (391)
T cd08209 137 LDLDDLAEQLREQALGGVDLIKDD----EILFDNPL-----APALERIRACRPVLQEVYE-------------------- 187 (391)
T ss_pred CCHHHHHHHHHHHHhCCCCccccc----ccCCCCCC-----CCHHHHHHHHHHHHHHHHH--------------------
Confidence 367888888777755 444443 33334322 3567778888888887643
Q ss_pred ccccccCCCCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCc-eEEEecCCCCCCCChhhHHHHHHHHH--HcCCcee
Q 017943 146 MNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAR--EQGLQIT 222 (363)
Q Consensus 146 ~~~~~~~~~~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~-vvGidl~g~e~~~~~~~~~~~~~~A~--~~gl~~~ 222 (363)
+.|-+.- +..+=+.+.++..+..+.+.+...+. .+.+.+.| |..+-.+++ +.+++++
T Consensus 188 ---------eTG~~~~--ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~G---------~~~l~~l~~~~~~~lpIh 247 (391)
T cd08209 188 ---------QTGRRTL--YAVNLTGPVFTLKEKARRLVEAGANALLFNVFAYG---------LDVLEALASDPEINVPIF 247 (391)
T ss_pred ---------hhCCcce--EEEEcCCCHHHHHHHHHHHHHhCCCEEEEeccccc---------hHHHHHHHhcCcCCcEEE
Confidence 3443333 33444455677777777777653321 12222223 222233344 4589999
Q ss_pred eecCCC
Q 017943 223 LHCGEI 228 (363)
Q Consensus 223 ~HagE~ 228 (363)
.|-+-.
T Consensus 248 aHra~~ 253 (391)
T cd08209 248 AHPAFA 253 (391)
T ss_pred ecCCcc
Confidence 996443
No 309
>PRK14847 hypothetical protein; Provisional
Probab=38.32 E-value=3.8e+02 Score=26.02 Aligned_cols=116 Identities=11% Similarity=0.112 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCc--EEEEEE-EeeCCCCHHHHHHHHHH
Q 017943 105 IGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKI--YVRLLL-SIDRRETTEAAMETVKL 181 (363)
Q Consensus 105 ~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi--~~~li~-~~~r~~~~e~~~~~~~~ 181 (363)
-+.+.+++++.+.++++-+++... ...|. .+.+.. ...|. +++-..+..+.
T Consensus 142 l~~s~~~vl~~~~~~v~~Ak~~~~-------------------------~~~g~~~~V~~~~EDasRa-d~dfL~~~~~~ 195 (333)
T PRK14847 142 FGMSRAEIKEIALAGTRQIRALAD-------------------------ANPGTQWIYEYSPETFSLA-ELDFAREVCDA 195 (333)
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcc-------------------------ccCCCceEEEEeeecCCCC-CHHHHHHHHHH
Confidence 478899999999999887764210 00121 233322 23443 45666666666
Q ss_pred HHhhCCC---ceEEEecCCCCCCCChhhHHHHHHHHHHc-----CCceeeecCCCCCh--hhHHHHHhcCCCeee
Q 017943 182 ALEMRDL---GVVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDFLPQRIG 246 (363)
Q Consensus 182 a~~~~~~---~vvGidl~g~e~~~~~~~~~~~~~~A~~~-----gl~~~~HagE~~~~--~~i~~~l~~g~~rig 246 (363)
+...... +..-|.++..=....|..+...++..++. ++++.+|+.-..+- .+...+++.|++++.
T Consensus 196 a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~ 270 (333)
T PRK14847 196 VSAIWGPTPQRKMIINLPATVESSTANVYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIE 270 (333)
T ss_pred HHHHhCCCccCCcEEEeCCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCchHHHHHHHHHHhCCCEEE
Confidence 5443211 11223333211123566666666554443 57888888655543 345667788999976
No 310
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=38.32 E-value=5.2e+02 Score=29.78 Aligned_cols=146 Identities=16% Similarity=0.163 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCC--eEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccc
Q 017943 70 DHATVTRITQEVVEDFASENI--VYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMN 147 (363)
Q Consensus 70 ~~e~~~~~~~~~~~~~~~~gV--~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (363)
+.++++...++.++-+.+.|| ..+|+.++.. + +.+++.+++++.++
T Consensus 142 t~del~~~y~eq~~~L~~~GvD~iliETi~d~~----------E-akAal~a~~~~~~~--------------------- 189 (1178)
T TIGR02082 142 TYDELVDAYTEQAKGLLDGGVDLLLIETCFDTL----------N-AKAALFAAETVFEE--------------------- 189 (1178)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHH----------H-HHHHHHHHHHHHhh---------------------
Confidence 568888899999999999998 6788877722 1 44555666553110
Q ss_pred ccccCCCCCCcEEEEEEEee---CC---CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCCc
Q 017943 148 DACNGTRGKKIYVRLLLSID---RR---ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGLQ 220 (363)
Q Consensus 148 ~~~~~~~~~gi~~~li~~~~---r~---~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~-~gl~ 220 (363)
...+.++-+-+ .+.. |. .+++.+...++ ..++.++++.+. ..|+.+.++++...+ ...+
T Consensus 190 ----~~~~lPv~vS~-~~~d~~Gr~~~G~~~~~~~~~l~------~~~~~avGlNCs---~gP~~m~~~l~~l~~~~~~p 255 (1178)
T TIGR02082 190 ----KGRELPIMISG-TIVDTSGRTLSGQTIEAFLTSLE------HAGIDMIGLNCA---LGPDEMRPHLKHLSEHAEAY 255 (1178)
T ss_pred ----cCCCCeEEEEE-EEECCCCeeCCCCcHHHHHHHHh------cCCCCEEEeCCC---CCHHHHHHHHHHHHHhcCce
Confidence 00111222210 1111 11 22333333332 223445554431 135667766666544 3567
Q ss_pred eeee--cCCCC-------ChhhHH----HHHhc-CCCeeeEecccCHHHHHHHhc
Q 017943 221 ITLH--CGEIP-------NKEEIQ----SMLDF-LPQRIGHACCFEEEEWRKLKS 261 (363)
Q Consensus 221 ~~~H--agE~~-------~~~~i~----~~l~~-g~~rigHg~~~~~~~~~~l~~ 261 (363)
+.++ +|... +|+... +..+. |+.-||-|+..+|+-++.|++
T Consensus 256 i~vyPNAGlP~~~~~yd~~p~~~a~~~~~~~~~ggv~IIGGCCGTtPeHI~ala~ 310 (1178)
T TIGR02082 256 VSCHPNAGLPNAFGEYDLTPDELAKALADFAAEGGLNIVGGCCGTTPDHIRAIAE 310 (1178)
T ss_pred EEEEeCCCCCCCCCcccCCHHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHH
Confidence 7665 45421 233222 22333 588899999999987766655
No 311
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=38.01 E-value=2.6e+02 Score=28.09 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEE---EEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 017943 69 TDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (363)
Q Consensus 69 ~~~e~~~~~~~~~~~~~~~~gV~y~---E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (363)
.+++.+.++++++ +.-|+-++ |.-.++. -.++++-+.++.++++++.+
T Consensus 157 lsp~~~a~~~~~~----~~GGvD~IKDDE~l~~q~-----~~p~~eRv~~~~~a~~~a~~-------------------- 207 (412)
T TIGR03326 157 LSTEEHAKVAYEL----WSGGVDLLKDDENLTSQP-----FNRFEERVEKLYKVRDKVEA-------------------- 207 (412)
T ss_pred CChHHHHHHHHHH----HhcCCceeecCCCCCCCC-----CccHHHHHHHHHHHHHHHHH--------------------
Confidence 3677777776665 45565544 3333322 23567778888888887643
Q ss_pred ccccccCCCCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCc-eEEEecCCCCCCCChhhHHHHHHHHHHcCCceeee
Q 017943 146 MNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (363)
Q Consensus 146 ~~~~~~~~~~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~-vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~H 224 (363)
+.|-+..+.. +-+.+.++..+..+.+.+..... .+.+.+.| ..-+..+-+.++..+++++.|
T Consensus 208 ---------eTG~~~~ya~--NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~G------~~~l~~l~~~~~~~~l~ih~H 270 (412)
T TIGR03326 208 ---------ETGERKEYLA--NITAPVREMERRAELVADLGGQYVMVDVVVCG------WSALQYIRELTEDLGLAIHAH 270 (412)
T ss_pred ---------HhCCcceEEE--EecCCHHHHHHHHHHHHHhCCCeEEEEeeccc------hHHHHHHHHhhccCCeEEEEc
Confidence 3444433333 44455677777777776653321 22222333 233555555556678999999
Q ss_pred cCC
Q 017943 225 CGE 227 (363)
Q Consensus 225 agE 227 (363)
-+-
T Consensus 271 ra~ 273 (412)
T TIGR03326 271 RAM 273 (412)
T ss_pred CCc
Confidence 643
No 312
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=37.98 E-value=2.6e+02 Score=25.85 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhCCC---ceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEecc-
Q 017943 175 AMETVKLALEMRDL---GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACC- 250 (363)
Q Consensus 175 ~~~~~~~a~~~~~~---~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~- 250 (363)
+-..+++|..|... .++=+|+...... ..-.+.-+-+.|++-.+|+|+=-| ....+.+...+.+|++.+.=...
T Consensus 29 ~GDpVelA~~Y~e~GADElvFlDItAs~~g-r~~~~~vv~r~A~~vfiPltVGGG-I~s~eD~~~ll~aGADKVSINsaA 106 (256)
T COG0107 29 AGDPVELAKRYNEEGADELVFLDITASSEG-RETMLDVVERVAEQVFIPLTVGGG-IRSVEDARKLLRAGADKVSINSAA 106 (256)
T ss_pred cCChHHHHHHHHHcCCCeEEEEeccccccc-chhHHHHHHHHHhhceeeeEecCC-cCCHHHHHHHHHcCCCeeeeChhH
Confidence 34456777777543 4777887643322 112334445557778899998544 33456777888899998766554
Q ss_pred -cCHHHHHHHhcC
Q 017943 251 -FEEEEWRKLKSS 262 (363)
Q Consensus 251 -~~~~~~~~l~~~ 262 (363)
.+|+++..++++
T Consensus 107 v~~p~lI~~~a~~ 119 (256)
T COG0107 107 VKDPELITEAADR 119 (256)
T ss_pred hcChHHHHHHHHH
Confidence 378888888765
No 313
>PRK06267 hypothetical protein; Provisional
Probab=37.80 E-value=1.3e+02 Score=29.32 Aligned_cols=125 Identities=16% Similarity=0.136 Sum_probs=74.9
Q ss_pred CChhhHHHHHHHHHHcCCceeee----cCCCCChhhHHHHH----hcCCCeee-------Eecc------cC-HHHHHHH
Q 017943 202 GEWTTFLPALKFAREQGLQITLH----CGEIPNKEEIQSML----DFLPQRIG-------HACC------FE-EEEWRKL 259 (363)
Q Consensus 202 ~~~~~~~~~~~~A~~~gl~~~~H----agE~~~~~~i~~~l----~~g~~rig-------Hg~~------~~-~~~~~~l 259 (363)
.+.+...+.++.|++.|+++..| .||+ .+++.+.+ +++++.+. -|+. ++ .+.++.+
T Consensus 150 ~s~ed~~~~l~~ak~aGi~v~~g~IiGlgEt--~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~i 227 (350)
T PRK06267 150 KPLDKIKEMLLKAKDLGLKTGITIILGLGET--EDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLEYMNWV 227 (350)
T ss_pred CCHHHHHHHHHHHHHcCCeeeeeEEEeCCCC--HHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHHHHHHH
Confidence 45677888899999999986655 3554 33333322 35776642 1211 11 2556666
Q ss_pred hcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEE----ecCCCCCccCCChHHHHHHHHHHCCCCHHHHHHH
Q 017943 260 KSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLV----LCTDDSGVFSTSVSREYDLAASAFSLGRREMFQL 332 (363)
Q Consensus 260 ~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~----l~TDd~~~~~~~l~~E~~~~~~~~~l~~~~l~~l 332 (363)
+-.++.+ |..++..+...+ .-.++..++.+|++.. +-.|-.+..|.+..++++......--|..|+..|
T Consensus 228 a~~Rl~l---P~~~I~~~~~~~-~l~~~~~~~~aGaN~i~~~p~~g~ylt~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (350)
T PRK06267 228 SSVRLNF---PKIKIITGTWVD-KLTNIGPLIMSGSNVITKFPLFSMYGTKEGKRVENEIRWTGRELYGTFTDLDVL 300 (350)
T ss_pred HHHHHHC---CCCCcchhhHhH-hcchhhHHhhcCcceeeccchhccCcccCCCCHHHHHHHhhhhhhcccccHHHh
Confidence 6655533 555553333211 1234444566999877 7777778888899999998877655555555444
No 314
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=36.99 E-value=79 Score=28.43 Aligned_cols=57 Identities=18% Similarity=0.150 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecC
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG 226 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~Hag 226 (363)
.+++++.+.++....+.....-++.+.|.|..-.++.+.++++.+++.|+++.+...
T Consensus 46 ~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~~~~~~li~~~~~~g~~~~i~TN 102 (235)
T TIGR02493 46 VTPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQPEFLSELFKACKELGIHTCLDTS 102 (235)
T ss_pred CCHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCHHHHHHHHHHHHHCCCCEEEEcC
Confidence 456666665555444322111246666766656666677999999999998888753
No 315
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=36.93 E-value=3.7e+02 Score=25.37 Aligned_cols=47 Identities=13% Similarity=0.103 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEeccc
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF 251 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~ 251 (363)
-.+..+-+..+..++|+.+|-|=.-+.+++..+++.|+..|.=++.+
T Consensus 187 l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l 233 (282)
T TIGR01859 187 LDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDC 233 (282)
T ss_pred cCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHH
Confidence 34555555566678999999865556678888888998887766654
No 316
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=36.16 E-value=4.2e+02 Score=26.15 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=74.3
Q ss_pred EEEEeeCCCCHHHHHHHHHHHHhhCC----C--ceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHH
Q 017943 162 LLLSIDRRETTEAAMETVKLALEMRD----L--GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQ 235 (363)
Q Consensus 162 li~~~~r~~~~e~~~~~~~~a~~~~~----~--~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~ 235 (363)
+.+.+..+.+.++..+-.+....++. + ...||.+.. ..++|+.|+++.+.+.++|+++.+-. .+++.+.
T Consensus 99 ~fvdv~D~m~e~el~~r~~~I~~f~~ervGe~L~LDgvair~--~Sgdpekfa~ave~v~~~~~pv~l~s---~dpevmk 173 (467)
T COG1456 99 MFVDVADDMDEEELVERANEIANFRKERVGEKLKLDGVAIRN--RSGDPEKFAEAVEKVAEAGLPVILCS---FDPEVMK 173 (467)
T ss_pred eEEECcccCCHHHHHHHHHHHHHHHHhhhcceeeeeeEEEEe--cCCCHHHHHHHHHHHHhcCCcEEEEe---CCHHHHH
Confidence 45556666666655555554444432 1 245666553 23578999999999999999988755 5677777
Q ss_pred HHHhc-CCCeeeEecccC----HHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCC
Q 017943 236 SMLDF-LPQRIGHACCFE----EEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP 296 (363)
Q Consensus 236 ~~l~~-g~~rigHg~~~~----~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~ 296 (363)
++++. +-.| --.+..+ .+..++..+.++++.+.--.++..- ..-..++.++|+.
T Consensus 174 aaLev~~dqk-PllYaAte~n~~e~~klav~y~vplvl~a~~dl~~l------k~la~~~~~~Gi~ 232 (467)
T COG1456 174 AALEVVKDQK-PLLYAATEDNWKEFAKLAVEYKVPLVLSAFNDLDDL------KNLAVTYAQAGIK 232 (467)
T ss_pred HHHHHhhccC-ceeeecccccHHHHHHHHhhcCCcEEEeccCCHHHH------HHHHHHHHHcCCc
Confidence 77763 3222 1112222 3567777888998876543333211 1224577888885
No 317
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=35.51 E-value=53 Score=35.44 Aligned_cols=38 Identities=32% Similarity=0.515 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCeEEEEee-CCCccccCCCCHHH--HHHHHH
Q 017943 80 EVVEDFASENIVYLELRT-TPKRNESIGMSKRS--YMDAVV 117 (363)
Q Consensus 80 ~~~~~~~~~gV~y~E~r~-~p~~~~~~g~~~~~--~~~~v~ 117 (363)
.-++++.+.||.|+|+|. +.......|++.++ +++.++
T Consensus 258 ~~~~~l~~~Gi~YiE~R~lDlnPf~~~GI~~~~~~Fl~lfl 298 (737)
T TIGR01435 258 KTVESLAKTGIEYLEIRSIDLNPFEPNGISKDELIFIHLFM 298 (737)
T ss_pred CcHHHHHhcCCcEEEEeeccCCCCCcCCCCHHHHHHHHHHH
Confidence 356788899999999993 33333456888765 344443
No 318
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=35.51 E-value=1.6e+02 Score=28.74 Aligned_cols=37 Identities=30% Similarity=0.406 Sum_probs=27.7
Q ss_pred CceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeec
Q 017943 188 LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 225 (363)
Q Consensus 188 ~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~Ha 225 (363)
.++.+|-..+.. ..+...+.++++.+++.|.++.+|+
T Consensus 104 ~G~~~~k~~~~~-~~~~~~l~~~~~~~~~~g~~v~~H~ 140 (374)
T cd01317 104 AGAVGFSDDGKP-IQDAELLRRALEYAAMLDLPIIVHP 140 (374)
T ss_pred CCcEEEEcCCcC-CCCHHHHHHHHHHHHhcCCeEEEec
Confidence 367888754322 1345678889999999999999999
No 319
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=35.34 E-value=4.1e+02 Score=25.52 Aligned_cols=53 Identities=26% Similarity=0.320 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeec
Q 017943 169 RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 225 (363)
Q Consensus 169 ~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~Ha 225 (363)
..+.+...+.++.+.+. ++..+.+.|.|....+ .+.++++.+++.|+.+.+-.
T Consensus 36 ~l~~e~~~~ii~~~~~~---g~~~v~~~GGEPll~~-~~~~ii~~~~~~g~~~~l~T 88 (358)
T TIGR02109 36 ELTTEEWTDVLTQAAEL---GVLQLHFSGGEPLARP-DLVELVAHARRLGLYTNLIT 88 (358)
T ss_pred CCCHHHHHHHHHHHHhc---CCcEEEEeCccccccc-cHHHHHHHHHHcCCeEEEEe
Confidence 35567777777776554 3445666666654443 57789999999998766543
No 320
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=35.29 E-value=3.6e+02 Score=24.87 Aligned_cols=98 Identities=19% Similarity=0.282 Sum_probs=52.1
Q ss_pred hhhHHHHHHHHHHcCCceeeec-CCCCChhhHHHHHh-cCC-Ce-eeEecccCHHHHHHHhcCCCcEEEccccccccccc
Q 017943 204 WTTFLPALKFAREQGLQITLHC-GEIPNKEEIQSMLD-FLP-QR-IGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETI 279 (363)
Q Consensus 204 ~~~~~~~~~~A~~~gl~~~~Ha-gE~~~~~~i~~~l~-~g~-~r-igHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~ 279 (363)
.+.+.+++....+.+.++.+|. |.....+.+...+. ++. ++ .-+|..-.+++.+.++..++.+ +|+....-+..
T Consensus 194 ~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l--~~s~~~~~~~~ 271 (355)
T cd03799 194 LDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFV--LPSVTAADGDR 271 (355)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEE--ecceecCCCCc
Confidence 4566677776666555566664 33222233433332 332 22 2344433467788888777655 55432111111
Q ss_pred cCCCCccHHHHHHcCCCEEecCCCCC
Q 017943 280 SSLDIHHFVDLYKAQHPLVLCTDDSG 305 (363)
Q Consensus 280 ~~~~~~pi~~l~~~Gv~v~l~TDd~~ 305 (363)
.++ ...+-+.+..|+|+. +||.++
T Consensus 272 e~~-~~~~~Ea~a~G~Pvi-~~~~~~ 295 (355)
T cd03799 272 EGL-PVVLMEAMAMGLPVI-STDVSG 295 (355)
T ss_pred cCc-cHHHHHHHHcCCCEE-ecCCCC
Confidence 122 245778899999984 577654
No 321
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=34.87 E-value=4.4e+02 Score=25.70 Aligned_cols=126 Identities=14% Similarity=0.114 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEeccc-----CHHHHHHHhcCCCcEEEccccccccccc
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF-----EEEEWRKLKSSKIPVEICLTSNIRTETI 279 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~-----~~~~~~~l~~~~i~ve~cPtSN~~l~~~ 279 (363)
..-..+.+.|+++|+.+..|=.- ..+.+.++...| +.+ +-+.-+.-.+.|..+.+= .-|+..|+-
T Consensus 210 ~~r~~i~~~c~~rgI~lASHDDa--T~~hV~es~~~G-------v~iAEFPtT~eAA~asr~~Gm~VlMG-APNivrGgS 279 (377)
T COG3454 210 PNRQAIAALCRERGIALASHDDA--TVEHVAESHGLG-------VAIAEFPTTVEAAKASRELGMQVLMG-APNIVRGGS 279 (377)
T ss_pred chHHHHHHHHHHcCCceecCCcC--cHHHHHHHHhcC-------eeEEeCccHHHHHHHHHHhCchhhcC-CCceeccCC
Confidence 44566778899999999998642 235566655443 333 224445555566655432 237666642
Q ss_pred cCCCCccHHHHHHcCCCEEecCCCCCccCCChHH-HHHHHHHHCCCCHHHHHHH-HHHHHHHcCCCh
Q 017943 280 SSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSR-EYDLAASAFSLGRREMFQL-AKSAVKFIFANG 344 (363)
Q Consensus 280 ~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~-E~~~~~~~~~l~~~~l~~l-~~na~~~sf~~~ 344 (363)
.+ +.--.+++.+.|+-=+|+||-- ..||.. -|.++.+..+++..+.++| +.|.+++..+++
T Consensus 280 Hs-GNvsA~ela~~glLDiLsSDY~---P~SLl~A~F~La~~~~~~~lpqAvalvt~nPA~algl~D 342 (377)
T COG3454 280 HS-GNVSARELAQHGLLDILSSDYV---PASLLHAAFRLADLGSNISLPQAVALVTKNPARALGLTD 342 (377)
T ss_pred cc-cchhHHHHHhCCceeeecccCC---cHHHHHHHHHHhhhhcccCHHHHHHHhccCHHHhcCCCc
Confidence 21 3345789999999999999952 233444 4566666677789886555 699999988774
No 322
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=34.64 E-value=30 Score=38.51 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=21.8
Q ss_pred CCcchhccc-----cCCCCCHHHHHHHHHH
Q 017943 7 MPKVELHAH-----LNGSIRDSTLLELARV 31 (363)
Q Consensus 7 lPK~eLH~H-----L~Gsi~~~~l~~la~~ 31 (363)
|+.++||+| |+|+++++.+.+.|++
T Consensus 1 m~fv~LHvHS~ySlLDg~~~~~elv~~Ak~ 30 (973)
T PRK07135 1 MKLINLHTNTEYSFLSSTIKLDSLIKYAKE 30 (973)
T ss_pred CCccccccCccCcccccCCCHHHHHHHHHH
Confidence 467999999 5788999999999985
No 323
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=34.25 E-value=4.4e+02 Score=25.50 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=42.5
Q ss_pred ceEEEecCCCCCC--CChhhHHHHHHHHHHcCCceeeecCCCC-ChhhHHHHHhcC--CCeee---Eecc-cC------H
Q 017943 189 GVVGIDLSGNPTK--GEWTTFLPALKFAREQGLQITLHCGEIP-NKEEIQSMLDFL--PQRIG---HACC-FE------E 253 (363)
Q Consensus 189 ~vvGidl~g~e~~--~~~~~~~~~~~~A~~~gl~~~~HagE~~-~~~~i~~~l~~g--~~rig---Hg~~-~~------~ 253 (363)
.|+--...|.+.. .+........++|++.|+.+.+=-|-.. +....+.++..| |+-|. |++. ++ .
T Consensus 210 DIitHcfngkpn~~l~~dg~vr~~vrra~erGV~fD~ghG~asfsf~vAr~aia~GllP~~ISSDlh~~~~~n~Pv~dla 289 (386)
T COG3964 210 DIITHCFNGKPNTILTDDGVVRAEVRRARERGVIFDAGHGRASFSFNVARRAIANGLLPDIISSDLHTITKLNGPVYDLA 289 (386)
T ss_pred ceeeeeccCCCCCccccchhHHHHHHHHHhcceEEEccCCcceeeHHHHHHHHhcCCCcceeeccceeeeecCchHHHHH
Confidence 3555444454332 3446677788888988988876443222 223334566644 66663 5554 32 2
Q ss_pred HHHHHHhcCCCcE
Q 017943 254 EEWRKLKSSKIPV 266 (363)
Q Consensus 254 ~~~~~l~~~~i~v 266 (363)
-.|..+-.-|.++
T Consensus 290 ~~mSKllalgmpl 302 (386)
T COG3964 290 WIMSKLLALGMPL 302 (386)
T ss_pred HHHHHHHHcCCcH
Confidence 3455555556554
No 324
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=34.06 E-value=3.8e+02 Score=24.68 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHcCCceeeecCC
Q 017943 205 TTFLPALKFAREQGLQITLHCGE 227 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE 227 (363)
+.++++.+.|+++|+.+.+|.-+
T Consensus 133 ~~l~~l~~~A~~~Gv~l~lE~~~ 155 (279)
T TIGR00542 133 EGLKEAVELAARAQVTLAVEIMD 155 (279)
T ss_pred HHHHHHHHHHHHcCCEEEEeeCC
Confidence 34567788899999999999643
No 325
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=33.92 E-value=62 Score=31.66 Aligned_cols=41 Identities=15% Similarity=0.275 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCcee-eecCCCCChhhHHHHHhcCCCeeeEecc
Q 017943 208 LPALKFAREQGLQIT-LHCGEIPNKEEIQSMLDFLPQRIGHACC 250 (363)
Q Consensus 208 ~~~~~~A~~~gl~~~-~HagE~~~~~~i~~~l~~g~~rigHg~~ 250 (363)
.++.+.++++|+++. -|..- +.+.+.++++.|.+.+.|...
T Consensus 175 ~~~i~~~~~~gi~v~~GH~~a--~~~~~~~a~~~G~~~~tH~~n 216 (374)
T cd00854 175 LELIRYLVERGIIVSIGHSDA--TYEQAVAAFEAGATHVTHLFN 216 (374)
T ss_pred HHHHHHHHHCCeEEEeeCCcC--CHHHHHHHHHcCCCeeeECCC
Confidence 678899999999995 88731 234577888899999999964
No 326
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=33.52 E-value=4.2e+02 Score=26.72 Aligned_cols=109 Identities=8% Similarity=0.031 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEE---EEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 017943 69 TDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (363)
Q Consensus 69 ~~~e~~~~~~~~~~~~~~~~gV~y~---E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (363)
.+++.+.++++++. .-|+-++ |...++.. .+.++-+.++.++++++++
T Consensus 173 Lsp~~~a~~~y~~~----~GGvD~IKDDE~l~~q~f-----~p~~eRv~~~~~ai~~a~~-------------------- 223 (424)
T cd08208 173 LPPGEFAELGYQSW----LGGLDIAKDDEMLADVDW-----CPLEERAALLGKARRRAEA-------------------- 223 (424)
T ss_pred CCHHHHHHHHHHHH----cCCcccccccccccCCCC-----CCHHHHHHHHHHHHHHHHH--------------------
Confidence 36777777777664 4555444 44444332 3567778888898888643
Q ss_pred ccccccCCCCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCc-eEEEecCCCCCCCChhhHHHHHHHHHHcCCceeee
Q 017943 146 MNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (363)
Q Consensus 146 ~~~~~~~~~~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~-vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~H 224 (363)
+.|-+..+.+ +-+.+.++..+..+.+.+..... .+-+...| |..+-.+++..+++++.|
T Consensus 224 ---------eTG~~~~ya~--NiT~~~~em~~ra~~a~~~G~~~vmv~~~~~G---------~~al~~L~~~~~l~ihaH 283 (424)
T cd08208 224 ---------ETGVPKIYLA--NITDEVDRLMELHDVAVRNGANALLINAMPVG---------LSAVRMLRKHAQVPLIAH 283 (424)
T ss_pred ---------hhCCcceEEE--EccCCHHHHHHHHHHHHHhCCCEEEEeeeccc---------HHHHHHHHhcCCCeEEec
Confidence 3443333333 33445677777777777653321 12222233 222333445568999999
Q ss_pred cC
Q 017943 225 CG 226 (363)
Q Consensus 225 ag 226 (363)
-+
T Consensus 284 ra 285 (424)
T cd08208 284 FP 285 (424)
T ss_pred cC
Confidence 64
No 327
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=33.32 E-value=1.8e+02 Score=27.20 Aligned_cols=91 Identities=11% Similarity=0.060 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHHcCCceeeec-CCCCChhhHHHHH-hcCC-Ce-eeEecccCHHHHHHHhcCCCcEEEccccccccccc
Q 017943 204 WTTFLPALKFAREQGLQITLHC-GEIPNKEEIQSML-DFLP-QR-IGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETI 279 (363)
Q Consensus 204 ~~~~~~~~~~A~~~gl~~~~Ha-gE~~~~~~i~~~l-~~g~-~r-igHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~ 279 (363)
.+.+.+++...++.+-.+.++. |.....+.+...+ ..+. ++ .-+|. .++..++++...+. ++|+..-
T Consensus 207 ~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~--v~ps~~E----- 277 (358)
T cd03812 207 HEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGV--RNDVPELLQAMDVF--LFPSLYE----- 277 (358)
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecc--cCCHHHHHHhcCEE--Eeccccc-----
Confidence 4567777777666544444443 4433223344333 2442 33 23444 44567778777665 4776421
Q ss_pred cCCCCccHHHHHHcCCCEEecCCCCCc
Q 017943 280 SSLDIHHFVDLYKAQHPLVLCTDDSGV 306 (363)
Q Consensus 280 ~~~~~~pi~~l~~~Gv~v~l~TDd~~~ 306 (363)
++ ...+-+.+..|+|| |+||.++.
T Consensus 278 -~~-~~~~lEAma~G~Pv-I~s~~~~~ 301 (358)
T cd03812 278 -GL-PLVLIEAQASGLPC-ILSDTITK 301 (358)
T ss_pred -CC-CHHHHHHHHhCCCE-EEEcCCch
Confidence 11 13467889999998 56886654
No 328
>PRK04527 argininosuccinate synthase; Provisional
Probab=33.16 E-value=4.8e+02 Score=26.04 Aligned_cols=140 Identities=15% Similarity=0.091 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHHcCCceeeecCC--CCChh----hHHHHHhcCC---CeeeEecc---cCHHHHHHHhcCCCcEEEccc
Q 017943 204 WTTFLPALKFAREQGLQITLHCGE--IPNKE----EIQSMLDFLP---QRIGHACC---FEEEEWRKLKSSKIPVEICLT 271 (363)
Q Consensus 204 ~~~~~~~~~~A~~~gl~~~~HagE--~~~~~----~i~~~l~~g~---~rigHg~~---~~~~~~~~l~~~~i~ve~cPt 271 (363)
+-.|..+++.|++.|....+|-.- ..+.. .+..+-++++ -| .-+.. .-++++++++++||++..-..
T Consensus 95 ~~~~~~l~e~A~~~G~~~IA~G~tgkgnDq~rfrpg~~Al~el~ViaPlr-e~~~~k~~~R~~~i~ya~~~gipv~~~~~ 173 (400)
T PRK04527 95 YLIVDAALKRAEELGTRIIAHGCTGMGNDQVRFDLAVKALGDYQIVAPIR-EIQKEHTQTRAYEQKYLEERGFGVRAKQK 173 (400)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCcCCCCchhhccHHHHHhhcCCccchHH-HhcCcccccHHHHHHHHHHcCCCCCCCCC
Confidence 447888899999999999999542 12211 1222113331 22 22322 336789999999999965431
Q ss_pred -----cccccccccC-----CCCccH--HHH-----------------HHcCCCEEecCCCCCccCCChHHHHHHHHHHC
Q 017943 272 -----SNIRTETISS-----LDIHHF--VDL-----------------YKAQHPLVLCTDDSGVFSTSVSREYDLAASAF 322 (363)
Q Consensus 272 -----SN~~l~~~~~-----~~~~pi--~~l-----------------~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~~ 322 (363)
.|+....+.+ ...+|- ..| .+.|+||+|+ +-.+...++..++-..+-..
T Consensus 174 ~yS~D~Nlw~~s~E~g~Ldp~~~~~~~~~~~t~~p~~ap~~p~~v~i~Fe~G~pv~ln--G~~~~~~~li~~lN~i~g~~ 251 (400)
T PRK04527 174 AYTINENLLGVTMSGGEIDRWEAPGEGARGWCAPRSAWPTEALTVTIKFVEGEAVALD--GKPLPGAQILAKLNKLFAQY 251 (400)
T ss_pred CcccccchhheecccCCCCcCcCCCHHHHHhcCCHhHCCCCCeEEEEEEEccEEEEEC--CEeCCHHHHHHHHHHHHhhc
Confidence 2333222211 111111 111 2789999994 44444567777776666555
Q ss_pred CCCH---------------------HHHHHHHHHHHHHcCCChHH
Q 017943 323 SLGR---------------------REMFQLAKSAVKFIFANGRV 346 (363)
Q Consensus 323 ~l~~---------------------~~l~~l~~na~~~sf~~~~~ 346 (363)
|+.. ..+...+...++..-++.++
T Consensus 252 GvGr~d~vEnr~vG~KsR~vyEaP~~~iL~~Ah~~LE~~~l~r~~ 296 (400)
T PRK04527 252 GVGRGVYTGDTVIGLKGRIVFEAPGLVSLLTAHRALEDAVLTKQQ 296 (400)
T ss_pred ccCceeeecccccccccceeccChHHHHHHHHHHHHHHhhCCHHH
Confidence 5422 34666777888888887765
No 329
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=33.09 E-value=3.3e+02 Score=26.79 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=28.4
Q ss_pred CCccHHHHHHcCCCEEecCC--CCCccCCChHHHHHHHHHHCCCCHHHHHHH
Q 017943 283 DIHHFVDLYKAQHPLVLCTD--DSGVFSTSVSREYDLAASAFSLGRREMFQL 332 (363)
Q Consensus 283 ~~~pi~~l~~~Gv~v~l~TD--d~~~~~~~l~~E~~~~~~~~~l~~~~l~~l 332 (363)
+..||.+.++.|..|.|+-= ||+.+ ...++-.||++.+|+-++
T Consensus 149 Ga~pI~~AL~~GADIVI~GR~~D~Al~-------~a~~~~~~GW~~~d~d~l 193 (362)
T PF07287_consen 149 GAEPIVEALEAGADIVITGRVADPALF-------AAPAIHEFGWSEDDYDRL 193 (362)
T ss_pred ChHHHHHHHHcCCCEEEeCcccchHHH-------HhHHHHHcCCCccchhhh
Confidence 45899999999999998732 33333 334444577776665444
No 330
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=32.76 E-value=4.3e+02 Score=24.98 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=89.0
Q ss_pred CHHHHHHhhhHHHhhcCCH--HHH-----HHHHHHHHHHHHhcCC--eEEEEeeCCCc--cc-----cCCCCHHHHHHHH
Q 017943 53 SLHEVFKLFDLIHVLTTDH--ATV-----TRITQEVVEDFASENI--VYLELRTTPKR--NE-----SIGMSKRSYMDAV 116 (363)
Q Consensus 53 ~l~~f~~~f~~~~~~~~~~--e~~-----~~~~~~~~~~~~~~gV--~y~E~r~~p~~--~~-----~~g~~~~~~~~~v 116 (363)
++.+++.....+......| -|. -.-+.+.++++++.|| ..+|=...|.. |. ..-++.++.++.+
T Consensus 62 ~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI 141 (285)
T TIGR02320 62 SWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKI 141 (285)
T ss_pred CHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHH
Confidence 6888888776655443322 000 1234556677788999 57877777764 11 1235766666654
Q ss_pred HHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEEEeeCCCC---HHHHHHHHHHHHhhCCCceEEE
Q 017943 117 VEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRET---TEAAMETVKLALEMRDLGVVGI 193 (363)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~~~r~~~---~e~~~~~~~~a~~~~~~~vvGi 193 (363)
..+.+. +. +-.+-++ -|+.. .....+.++.+..|..-|-.++
T Consensus 142 ~Aa~~a-~~-------------------------------~~~~~Ii---ARTDa~~~~~~~~eAi~Ra~ay~eAGAD~i 186 (285)
T TIGR02320 142 RAGKDA-QT-------------------------------TEDFMII---ARVESLILGKGMEDALKRAEAYAEAGADGI 186 (285)
T ss_pred HHHHHh-cc-------------------------------CCCeEEE---EecccccccCCHHHHHHHHHHHHHcCCCEE
Confidence 443322 11 1111111 12110 0123456666666654333333
Q ss_pred ecCCCCCCCChhhHHHHHHHHHHc--CCceeeecCCCCChhhHHHHHhcCCCeeeEecccC-------HHHHHHHhcCCC
Q 017943 194 DLSGNPTKGEWTTFLPALKFAREQ--GLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFE-------EEEWRKLKSSKI 264 (363)
Q Consensus 194 dl~g~e~~~~~~~~~~~~~~A~~~--gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~~-------~~~~~~l~~~~i 264 (363)
-+.+. ..+++.+..+++..+.. ++|+.+..++... ..+.+.-++|..|+.+|..+- .+.++.+.+.|.
T Consensus 187 fv~~~--~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~-~~~~eL~~lG~~~v~~~~~~~~aa~~a~~~~~~~~~~~g~ 263 (285)
T TIGR02320 187 MIHSR--KKDPDEILEFARRFRNHYPRTPLVIVPTSYYT-TPTDEFRDAGISVVIYANHLLRAAYAAMQQVAERILEHGR 263 (285)
T ss_pred EecCC--CCCHHHHHHHHHHhhhhCCCCCEEEecCCCCC-CCHHHHHHcCCCEEEEhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33221 13456666666654321 4677655443322 245666679999998886542 244555665554
No 331
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=32.69 E-value=1.7e+02 Score=26.71 Aligned_cols=64 Identities=23% Similarity=0.462 Sum_probs=45.6
Q ss_pred HHHHHHHHhhCCCceE-------------EEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCC
Q 017943 176 METVKLALEMRDLGVV-------------GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLP 242 (363)
Q Consensus 176 ~~~~~~a~~~~~~~vv-------------Gidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~ 242 (363)
.|++..+++.++..|+ |+|+.| ....+.++.+..+..|+++.+-.. .+++.+..+.+.|+
T Consensus 74 eEml~ia~~~kP~~vtLVPe~r~evTTegGlD~~~-----~~~~l~~~v~~L~~~GirVSLFiD--~d~~qi~aa~~~gA 146 (243)
T COG0854 74 EEMLAIALKTKPHQVTLVPEKREEVTTEGGLDVAG-----QLDKLRDAVRRLKNAGIRVSLFID--PDPEQIEAAAEVGA 146 (243)
T ss_pred HHHHHHHHhcCCCeEEeCCCchhhcccccchhhhh-----hhhhHHHHHHHHHhCCCeEEEEeC--CCHHHHHHHHHhCC
Confidence 4458888887765322 333332 235677888888999999999885 45667888888999
Q ss_pred Ceee
Q 017943 243 QRIG 246 (363)
Q Consensus 243 ~rig 246 (363)
++|.
T Consensus 147 ~~IE 150 (243)
T COG0854 147 PRIE 150 (243)
T ss_pred CEEE
Confidence 9985
No 332
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=32.60 E-value=3.1e+02 Score=24.71 Aligned_cols=83 Identities=22% Similarity=0.199 Sum_probs=51.0
Q ss_pred HHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEeccc--CHHH
Q 017943 178 TVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEE 255 (363)
Q Consensus 178 ~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~--~~~~ 255 (363)
.++.+.+..-+.+.-.|+.+... .....+..+-+.++..++++.+|.|= .+.+.+..++..|++++.=|... +++.
T Consensus 37 ~a~~~~~~G~~~l~i~dl~~~~~-~~~~~~~~i~~i~~~~~~~l~v~GGi-~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~ 114 (241)
T PRK13585 37 VAKRWVDAGAETLHLVDLDGAFE-GERKNAEAIEKIIEAVGVPVQLGGGI-RSAEDAASLLDLGVDRVILGTAAVENPEI 114 (241)
T ss_pred HHHHHHHcCCCEEEEEechhhhc-CCcccHHHHHHHHHHcCCcEEEcCCc-CCHHHHHHHHHcCCCEEEEChHHhhChHH
Confidence 33444343333466667775432 22345666777788899999997653 34566777888999987555533 4555
Q ss_pred HHHHhcC
Q 017943 256 WRKLKSS 262 (363)
Q Consensus 256 ~~~l~~~ 262 (363)
+..+.+.
T Consensus 115 ~~~i~~~ 121 (241)
T PRK13585 115 VRELSEE 121 (241)
T ss_pred HHHHHHH
Confidence 5555444
No 333
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.52 E-value=3.4e+02 Score=23.73 Aligned_cols=82 Identities=12% Similarity=0.056 Sum_probs=49.6
Q ss_pred HHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEeccc----CHHHHHHHhcCCCcEEEccccccccccccCCCC
Q 017943 209 PALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF----EEEEWRKLKSSKIPVEICLTSNIRTETISSLDI 284 (363)
Q Consensus 209 ~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~----~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~ 284 (363)
+..+.++.++.+... | ..++.++..+.+.|++-++= +-. ..+.++.++..=-.+-+||+ |++ ..
T Consensus 96 ~~~~~~~~~~~~~i~--G-~~t~~e~~~A~~~Gadyv~~-Fpt~~~~G~~~l~~~~~~~~~ipvvai-----GGI---~~ 163 (187)
T PRK07455 96 ELIEAAVAQDIPIIP--G-ALTPTEIVTAWQAGASCVKV-FPVQAVGGADYIKSLQGPLGHIPLIPT-----GGV---TL 163 (187)
T ss_pred HHHHHHHHcCCCEEc--C-cCCHHHHHHHHHCCCCEEEE-CcCCcccCHHHHHHHHhhCCCCcEEEe-----CCC---CH
Confidence 345566777776543 5 45677788888889988763 111 24556666543212445664 433 34
Q ss_pred ccHHHHHHcCCC-EEecCC
Q 017943 285 HHFVDLYKAQHP-LVLCTD 302 (363)
Q Consensus 285 ~pi~~l~~~Gv~-v~l~TD 302 (363)
..+..++++|+. |+++|.
T Consensus 164 ~n~~~~l~aGa~~vav~s~ 182 (187)
T PRK07455 164 ENAQAFIQAGAIAVGLSGQ 182 (187)
T ss_pred HHHHHHHHCCCeEEEEehh
Confidence 678899999975 556553
No 334
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=32.32 E-value=1.3e+02 Score=28.53 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEeccc
Q 017943 206 TFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF 251 (363)
Q Consensus 206 ~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~ 251 (363)
.|..+-+..+..++|+.+|-|=..+.+.++.++..|...|--++.+
T Consensus 194 d~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l 239 (288)
T TIGR00167 194 DFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTEL 239 (288)
T ss_pred CHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHH
Confidence 5666666666778999999875555567888888887776666544
No 335
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=32.16 E-value=1.7e+02 Score=27.75 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=36.9
Q ss_pred EEEecCCCCCC-CCh-hhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCee
Q 017943 191 VGIDLSGNPTK-GEW-TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRI 245 (363)
Q Consensus 191 vGidl~g~e~~-~~~-~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~ri 245 (363)
++|+-+...+. ..| -.|..+-+..+..++|+.+|-|=..+.+.++.++.+|...+
T Consensus 175 ~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~~PlVlHGgSGip~~eI~~aI~~GV~Kv 231 (286)
T COG0191 175 AAIGNVHGVYKPGNPKLDFDRLKEIQEAVSLPLVLHGGSGIPDEEIREAIKLGVAKV 231 (286)
T ss_pred eeccccccCCCCCCCCCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHhCceEE
Confidence 45555443443 233 45666666666678999999875555678999999987654
No 336
>PF08187 Tetradecapep: Myoactive tetradecapeptides family; InterPro: IPR012619 This entry consists of myoactive tetradecapeptides that are isolated from the gut of Earthworms, Eisenia foetida (Common brandling worm) and Pheretima vittata (Earthworm). These peptides were termed ETP and PTP respectively. Both peptides showed a potent excitatory action on spontaneous contractions of the anterior gut. These peptides show similarity to Molluscan tetradecapeptides and Arthropodan tridecapeptides [].; GO: 0005184 neuropeptide hormone activity, 0007218 neuropeptide signaling pathway, 0005576 extracellular region
Probab=31.96 E-value=11 Score=18.24 Aligned_cols=8 Identities=38% Similarity=0.667 Sum_probs=5.8
Q ss_pred CCeeeEec
Q 017943 242 PQRIGHAC 249 (363)
Q Consensus 242 ~~rigHg~ 249 (363)
++||.||.
T Consensus 7 adrishgf 14 (14)
T PF08187_consen 7 ADRISHGF 14 (14)
T ss_pred hhhhhcCC
Confidence 57888874
No 337
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=31.89 E-value=3.1e+02 Score=24.30 Aligned_cols=119 Identities=12% Similarity=0.157 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChhh---HHHHHhcCCCee-eEecccCHHHHHHHhcCCCcEEEcccc--cccccc
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIPNKEE---IQSMLDFLPQRI-GHACCFEEEEWRKLKSSKIPVEICLTS--NIRTET 278 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~~~~~---i~~~l~~g~~ri-gHg~~~~~~~~~~l~~~~i~ve~cPtS--N~~l~~ 278 (363)
.....+.+.|+++|+.+.++..+...... +..++..+++-| -.+...++..++.+.+.++++.++-.. ......
T Consensus 16 ~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~~l~~~~~~~ipvV~~~~~~~~~~~~~ 95 (267)
T cd06283 16 LVLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGNNKELYQRLAKNGKPVVLVDRKIPELGVDT 95 (267)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCCCChHHHHHHhcCCCCEEEEcCCCCCCCCCE
Confidence 44556667788899888887665322211 122333355543 222223444578888899998766332 111111
Q ss_pred c-cC-C--CCccHHHHHHcCC-CEEecCCCCCc-cC-CChHHHHHHHHHHCC
Q 017943 279 I-SS-L--DIHHFVDLYKAQH-PLVLCTDDSGV-FS-TSVSREYDLAASAFS 323 (363)
Q Consensus 279 ~-~~-~--~~~pi~~l~~~Gv-~v~l~TDd~~~-~~-~~l~~E~~~~~~~~~ 323 (363)
+ .+ . ...-...+.+.|. +|.+-++.+.. .. .....-|....+..|
T Consensus 96 v~~d~~~~g~~~~~~l~~~g~~~i~~l~~~~~~~~~~~~r~~g~~~~~~~~~ 147 (267)
T cd06283 96 VTLDNYEAAKEAVDHLIEKGYERILFVTEPLDEISPRMERYEGFKEALAEHG 147 (267)
T ss_pred EEeccHHHHHHHHHHHHHcCCCcEEEEecCccccccHHHHHHHHHHHHHHcC
Confidence 1 11 0 1223456677774 35554444432 21 233344555555444
No 338
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=31.83 E-value=4.6e+02 Score=25.03 Aligned_cols=87 Identities=15% Similarity=0.054 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcC-C-ceeeecCCCCChhhHHHHHhcCCCeeeE
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQG-L-QITLHCGEIPNKEEIQSMLDFLPQRIGH 247 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~g-l-~~~~HagE~~~~~~i~~~l~~g~~rigH 247 (363)
.+.++....++.+.+. ++-.|.+.|.|.... ..+.++.+.+++.+ + .+.+...-..-.+.+....+.|.+++.-
T Consensus 45 ls~eei~~li~~~~~~---Gv~~I~~tGGEPllr-~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v~I 120 (329)
T PRK13361 45 LSLEELAWLAQAFTEL---GVRKIRLTGGEPLVR-RGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRLNI 120 (329)
T ss_pred CCHHHHHHHHHHHHHC---CCCEEEEECcCCCcc-ccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeEEE
Confidence 4566666666655543 455666767665433 35667777777764 3 3444331111112223333468888765
Q ss_pred ecc-cCHHHHHHHh
Q 017943 248 ACC-FEEEEWRKLK 260 (363)
Q Consensus 248 g~~-~~~~~~~~l~ 260 (363)
.+. ++++..+.+.
T Consensus 121 SlDs~~~e~~~~i~ 134 (329)
T PRK13361 121 SLDTLRPELFAALT 134 (329)
T ss_pred EeccCCHHHhhhhc
Confidence 553 3455554443
No 339
>PRK00208 thiG thiazole synthase; Reviewed
Probab=31.78 E-value=4.3e+02 Score=24.60 Aligned_cols=129 Identities=18% Similarity=0.172 Sum_probs=78.8
Q ss_pred EEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc---CCceeeecCCCCChhhHHHH
Q 017943 161 RLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ---GLQITLHCGEIPNKEEIQSM 237 (363)
Q Consensus 161 ~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~---gl~~~~HagE~~~~~~i~~~ 237 (363)
.++.-..-..+.++|..+.+++.+.....++-+.+.|++..- ..+.....+.|++. |+.+..=+. .++.....+
T Consensus 64 ~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~l-lpd~~~tv~aa~~L~~~Gf~vlpyc~--~d~~~ak~l 140 (250)
T PRK00208 64 TLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTL-LPDPIETLKAAEILVKEGFVVLPYCT--DDPVLAKRL 140 (250)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCC-CcCHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHH
Confidence 334333334567888888888888766668888888876642 34566667777777 888774443 344444555
Q ss_pred HhcCCCe-------eeEeccc-CHHHHHHHhcC-CCcEEEccccccccccccCCCCccHHHHHHcCCC-EEecC
Q 017943 238 LDFLPQR-------IGHACCF-EEEEWRKLKSS-KIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP-LVLCT 301 (363)
Q Consensus 238 l~~g~~r-------igHg~~~-~~~~~~~l~~~-~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~-v~l~T 301 (363)
.++|++- ||-|..+ +++.++.+++. +++|.+- +++.. ...+.+.++.|.- |.+||
T Consensus 141 ~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve-------aGI~t--peda~~AmelGAdgVlV~S 205 (250)
T PRK00208 141 EEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD-------AGIGT--PSDAAQAMELGADAVLLNT 205 (250)
T ss_pred HHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe-------CCCCC--HHHHHHHHHcCCCEEEECh
Confidence 5567543 4444333 58889988885 5555321 22211 1347788888875 44554
No 340
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=31.62 E-value=5e+02 Score=25.36 Aligned_cols=115 Identities=12% Similarity=0.126 Sum_probs=60.9
Q ss_pred CCCCcEEEEEEEeeCCC------------CHHHHHHHHHHHHhhCCCceEE-EecCCCCCCCChhhHHHHHHHHHHcC-C
Q 017943 154 RGKKIYVRLLLSIDRRE------------TTEAAMETVKLALEMRDLGVVG-IDLSGNPTKGEWTTFLPALKFAREQG-L 219 (363)
Q Consensus 154 ~~~gi~~~li~~~~r~~------------~~e~~~~~~~~a~~~~~~~vvG-idl~g~e~~~~~~~~~~~~~~A~~~g-l 219 (363)
+.+|...+-|+|..... .+|...++++...+++.+++-. +|=.|.|...+ .+.++.+.++++. +
T Consensus 113 p~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP--~l~~lVqalk~~~~v 190 (414)
T COG2100 113 PSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYP--HLVDLVQALKEHKGV 190 (414)
T ss_pred CCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccch--hHHHHHHHHhcCCCc
Confidence 44555556666654321 2466777788877877664433 44445554433 4556666666652 2
Q ss_pred c---eeeecCCCCChhhHHHHHhcCCCeeeEecc-cCH------------------HHHHHHhcCCCcEEEccc
Q 017943 220 Q---ITLHCGEIPNKEEIQSMLDFLPQRIGHACC-FEE------------------EEWRKLKSSKIPVEICLT 271 (363)
Q Consensus 220 ~---~~~HagE~~~~~~i~~~l~~g~~rigHg~~-~~~------------------~~~~~l~~~~i~ve~cPt 271 (363)
- +..|.. .-+.+-+.+.-+.|.+|+-=.+. ++| +..+.+++.+|.+.+.|.
T Consensus 191 ~vVSmQTng~-~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv 263 (414)
T COG2100 191 EVVSMQTNGV-LLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPV 263 (414)
T ss_pred eEEEEeeCce-eccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeee
Confidence 2 122211 11122233444478888764443 343 345667777777777664
No 341
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=31.48 E-value=3.1e+02 Score=25.98 Aligned_cols=79 Identities=19% Similarity=0.088 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCCh-hhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEec
Q 017943 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEW-TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC 249 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~-~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~ 249 (363)
+|+++.+.++..- .+..-++|+-+..-+...| -.|..+-+..+..++|+.+|-|=..+.+.++.++..|...|--++
T Consensus 156 ~peea~~Fv~~Tg--vD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T 233 (284)
T PRK09195 156 DPAQAREFVEATG--IDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVAT 233 (284)
T ss_pred CHHHHHHHHHHHC--cCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 5677777665431 0111234443322232222 345555555666799999998755556778888889987776666
Q ss_pred cc
Q 017943 250 CF 251 (363)
Q Consensus 250 ~~ 251 (363)
.+
T Consensus 234 ~l 235 (284)
T PRK09195 234 EL 235 (284)
T ss_pred HH
Confidence 54
No 342
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=31.35 E-value=5e+02 Score=25.36 Aligned_cols=85 Identities=16% Similarity=0.129 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCC--CCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeE
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGN--PTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH 247 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~--e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigH 247 (363)
.++++..+.++.+.+. ++.-|-+.|. +...+.+.+.++++..++..-.++++++- -..+......+.|.+|+-|
T Consensus 103 Ls~eEI~~~a~~~~~~---Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~-lt~e~~~~Lk~aGv~r~~i 178 (366)
T TIGR02351 103 LNEEEIEREIEAIKKS---GFKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAIEVQP-LNEEEYKKLVEAGLDGVTV 178 (366)
T ss_pred CCHHHHHHHHHHHHhC---CCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCcccccccc-CCHHHHHHHHHcCCCEEEE
Confidence 4667777777666554 4555555433 33345677888888888764334555553 2334455555689999999
Q ss_pred eccc-CHHHHHH
Q 017943 248 ACCF-EEEEWRK 258 (363)
Q Consensus 248 g~~~-~~~~~~~ 258 (363)
+... +++..+.
T Consensus 179 ~lET~~~~~y~~ 190 (366)
T TIGR02351 179 YQETYNEKKYKK 190 (366)
T ss_pred EeecCCHHHHHh
Confidence 8754 4544433
No 343
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=31.16 E-value=3.6e+02 Score=27.42 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEE---EEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 017943 69 TDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (363)
Q Consensus 69 ~~~e~~~~~~~~~~~~~~~~gV~y~---E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (363)
.+++.+.++++++ +.-||-++ |.-.++. -.++++-+.++.++++++.+
T Consensus 158 lsp~~~A~~~~~~----~~GGvD~IKDDE~l~~~~-----~~p~~~Rv~~~~~a~~~a~~-------------------- 208 (450)
T cd08212 158 LSAKNYGRVVYEC----LRGGLDFTKDDENINSQP-----FMRWRDRFLFVAEAVNKAQA-------------------- 208 (450)
T ss_pred CCHHHHHHHHHHH----HccCCcccccCccCCCCC-----CCCHHHHHHHHHHHHHHHHH--------------------
Confidence 3577777776665 45565444 3333322 24567788899999887643
Q ss_pred ccccccCCCCCCcEEEEEEEeeCC-CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeee
Q 017943 146 MNDACNGTRGKKIYVRLLLSIDRR-ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (363)
Q Consensus 146 ~~~~~~~~~~~gi~~~li~~~~r~-~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~H 224 (363)
+.|-+. ++.++-+ .+.++..+..+.+.+.... .+=+++. . + ..-+..+.+.|++.+++++.|
T Consensus 209 ---------eTG~~~--~y~~NiTa~~~~em~~ra~~a~~~G~~-~~mv~~~--~-G--~~~l~~l~~~a~~~~l~IhaH 271 (450)
T cd08212 209 ---------ETGEVK--GHYLNVTAGTMEEMYKRAEFAKELGSP-IIMHDLL--T-G--FTAIQSLAKWCRDNGMLLHLH 271 (450)
T ss_pred ---------hhCCcc--eeeccccCCCHHHHHHHHHHHHHhCCC-eEeeecc--c-c--cchHHHHHHHhhhcCceEEec
Confidence 344332 3344444 3467777777777775332 2222311 1 1 233666677777889999999
Q ss_pred cCCC
Q 017943 225 CGEI 228 (363)
Q Consensus 225 agE~ 228 (363)
-+=.
T Consensus 272 rA~~ 275 (450)
T cd08212 272 RAGH 275 (450)
T ss_pred cccc
Confidence 6543
No 344
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=31.09 E-value=4.1e+02 Score=25.36 Aligned_cols=66 Identities=24% Similarity=0.320 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHcCCceeeecCCCCChhhHHHHHh-cC--C--CeeeEecccCHHHHHHHhcCCCcEEEccccc
Q 017943 206 TFLPALKFAREQGLQITLHCGEIPNKEEIQSMLD-FL--P--QRIGHACCFEEEEWRKLKSSKIPVEICLTSN 273 (363)
Q Consensus 206 ~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~-~g--~--~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN 273 (363)
-|++-+++|++..+|+.+|.-.. .+...+++. .+ . .-+.|++.-+.++++.+.+.++.+-+.+.++
T Consensus 136 vFekQl~LA~~~~~Pl~iH~r~a--~~d~~eIl~~~~~~~~~~vvvHsFtGs~e~~~~~lk~~~yig~~g~~~ 206 (296)
T KOG3020|consen 136 VFEKQLDLAKRLKLPLFIHCRSA--HEDLLEILKRFLPECHKKVVVHSFTGSAEEAQKLLKLGLYIGFTGCSL 206 (296)
T ss_pred HHHHHHHHHHHccCCeeeechhh--hHHHHHHHHHhccccCCceEEEeccCCHHHHHHHHHccEEecccceee
Confidence 47788889999999999998442 123334443 32 2 3578999888889999999996665555443
No 345
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=31.07 E-value=4.2e+02 Score=24.62 Aligned_cols=90 Identities=21% Similarity=0.186 Sum_probs=52.9
Q ss_pred HHHHHhhCCCceEEEecCCCCCC-CChhhHHHHHHHHHH-cCCceeeecCCCCChhhHHHHHhc--CCCeeeEeccc---
Q 017943 179 VKLALEMRDLGVVGIDLSGNPTK-GEWTTFLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDF--LPQRIGHACCF--- 251 (363)
Q Consensus 179 ~~~a~~~~~~~vvGidl~g~e~~-~~~~~~~~~~~~A~~-~gl~~~~HagE~~~~~~i~~~l~~--g~~rigHg~~~--- 251 (363)
++.+.++...|-.-+|+.+.... ..++.+.++.+..++ .++++.+-. ..++.+..+++. |++-|---...
T Consensus 28 ~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~~plsIDT---~~~~v~eaaL~~~~G~~iINsIs~~~~~ 104 (261)
T PRK07535 28 QKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVDVPLCIDS---PNPAAIEAGLKVAKGPPLINSVSAEGEK 104 (261)
T ss_pred HHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCCCCEEEeC---CCHHHHHHHHHhCCCCCEEEeCCCCCcc
Confidence 34444444445455666653221 234567777777665 488887754 456666777876 65543222111
Q ss_pred CHHHHHHHhcCCCcEEEccc
Q 017943 252 EEEEWRKLKSSKIPVEICLT 271 (363)
Q Consensus 252 ~~~~~~~l~~~~i~ve~cPt 271 (363)
.++.++.+++.|+++.+.+.
T Consensus 105 ~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 105 LEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred CHHHHHHHHHhCCCEEEEec
Confidence 35667888888888877654
No 346
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=30.96 E-value=3.3e+02 Score=24.79 Aligned_cols=119 Identities=13% Similarity=0.052 Sum_probs=72.7
Q ss_pred HHHHHHHc-CCceeeecCCCCChhhHHHHHhcCCCee-eEeccc--CHHHHHHHhcCC--CcEEEccccccccccccCCC
Q 017943 210 ALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRI-GHACCF--EEEEWRKLKSSK--IPVEICLTSNIRTETISSLD 283 (363)
Q Consensus 210 ~~~~A~~~-gl~~~~HagE~~~~~~i~~~l~~g~~ri-gHg~~~--~~~~~~~l~~~~--i~ve~cPtSN~~l~~~~~~~ 283 (363)
+.+..++. .+++.+|.==......+.+..+.|+++| -|.-.. ..+.++++++.| ..+++||...+
T Consensus 52 ~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~--------- 122 (220)
T COG0036 52 VVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPL--------- 122 (220)
T ss_pred HHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCH---------
Confidence 33444444 6999999853332234555666899997 476522 247899999987 56788996433
Q ss_pred CccHHHHHHcCCCEEecCCCCCccCCChHHH----HHHH---HHH---------CCCCHHHHHHHHHHHHH
Q 017943 284 IHHFVDLYKAQHPLVLCTDDSGVFSTSVSRE----YDLA---ASA---------FSLGRREMFQLAKSAVK 338 (363)
Q Consensus 284 ~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E----~~~~---~~~---------~~l~~~~l~~l~~na~~ 338 (363)
..+..+++.==-|.+=|=+||+.|-....+ .+.+ ... -|++.+.+.++...+++
T Consensus 123 -~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad 192 (220)
T COG0036 123 -EALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGAD 192 (220)
T ss_pred -HHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCC
Confidence 223334443334777788888887444332 2222 221 26788888888877765
No 347
>PRK05660 HemN family oxidoreductase; Provisional
Probab=30.85 E-value=5.2e+02 Score=25.33 Aligned_cols=68 Identities=19% Similarity=0.169 Sum_probs=42.8
Q ss_pred ceEEEecCC-CCCCCChhhHHHHHHHHHHc-----CCceeeecC-CCCChhhHHHHHhcCCCeeeEecc-cCHHHH
Q 017943 189 GVVGIDLSG-NPTKGEWTTFLPALKFAREQ-----GLQITLHCG-EIPNKEEIQSMLDFLPQRIGHACC-FEEEEW 256 (363)
Q Consensus 189 ~vvGidl~g-~e~~~~~~~~~~~~~~A~~~-----gl~~~~Hag-E~~~~~~i~~~l~~g~~rigHg~~-~~~~~~ 256 (363)
.+--|-+.| .|..-+++.+..+++..+++ +..+++-+. ++-..+.+....++|.+||.-|+. ++++.+
T Consensus 58 ~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L 133 (378)
T PRK05660 58 EVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKL 133 (378)
T ss_pred ceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHH
Confidence 355555655 45556788899999988773 445666552 222334444444589999999986 355433
No 348
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=30.77 E-value=4.4e+02 Score=24.47 Aligned_cols=25 Identities=4% Similarity=0.030 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCceee-ecCCCCCh
Q 017943 207 FLPALKFAREQGLQITL-HCGEIPNK 231 (363)
Q Consensus 207 ~~~~~~~A~~~gl~~~~-HagE~~~~ 231 (363)
+..++..++++|.++.+ |..+.+.|
T Consensus 105 ~~~~~~l~~~~g~~vv~m~~~~~g~P 130 (261)
T PRK07535 105 LEVVLPLVKKYNAPVVALTMDDTGIP 130 (261)
T ss_pred CHHHHHHHHHhCCCEEEEecCCCCCC
Confidence 55678889999988764 77554434
No 349
>PRK15452 putative protease; Provisional
Probab=30.62 E-value=5.8e+02 Score=25.80 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=39.8
Q ss_pred HHHHHHcCCceeeecCCCCCh---hhHHHHHhcCCCeeeEecccCHHHHHHHhcC--CCcEE-------------Ecccc
Q 017943 211 LKFAREQGLQITLHCGEIPNK---EEIQSMLDFLPQRIGHACCFEEEEWRKLKSS--KIPVE-------------ICLTS 272 (363)
Q Consensus 211 ~~~A~~~gl~~~~HagE~~~~---~~i~~~l~~g~~rigHg~~~~~~~~~~l~~~--~i~ve-------------~cPtS 272 (363)
+..+++..-.+.+|++-..+. ..+.-..++|++|+.=..-++-+.++.|+++ ++.+| .|+.|
T Consensus 101 l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrELsl~EI~~i~~~~~~~elEvfVHGalc~m~Sg~Clls 180 (443)
T PRK15452 101 IMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEIEEIRQQCPDMELEVFVHGALCMAYSGRCLLS 180 (443)
T ss_pred HHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcCCHHHHHHHHhhCCCCCEEEEEEccchheeeCcchHH
Confidence 456666644556677533322 2233333578988765556666677777643 45443 78888
Q ss_pred ccccc
Q 017943 273 NIRTE 277 (363)
Q Consensus 273 N~~l~ 277 (363)
+...+
T Consensus 181 ~~~~~ 185 (443)
T PRK15452 181 GYINK 185 (443)
T ss_pred HHhhc
Confidence 87765
No 350
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=30.54 E-value=2.3e+02 Score=27.20 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCC-CCCCChhhHHHHHHHHHHcCCceeeec
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGN-PTKGEWTTFLPALKFAREQGLQITLHC 225 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~-e~~~~~~~~~~~~~~A~~~gl~~~~Ha 225 (363)
.++++..+.++.+.++ ++..|.+.|. +...+.+.+.++++..++.+..+.+|+
T Consensus 72 ls~eei~~~~~~~~~~---G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~ 125 (340)
T TIGR03699 72 LSVEEILQKIEELVAY---GGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHS 125 (340)
T ss_pred CCHHHHHHHHHHHHHc---CCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCC
Confidence 4667777766666544 4545555543 333456778888888888776777775
No 351
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=30.44 E-value=1.7e+02 Score=27.44 Aligned_cols=20 Identities=10% Similarity=0.066 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCeEEEEeeCC
Q 017943 80 EVVEDFASENIVYLELRTTP 99 (363)
Q Consensus 80 ~~~~~~~~~gV~y~E~r~~p 99 (363)
..+.+....||+|+|+|...
T Consensus 38 ~~~~~qL~~G~R~lDir~~~ 57 (274)
T cd00137 38 EMYRQQLLSGCRCVDIRCWD 57 (274)
T ss_pred HHHHHHHHcCCcEEEEEeec
Confidence 34555667999999999854
No 352
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=30.42 E-value=5.1e+02 Score=25.05 Aligned_cols=174 Identities=17% Similarity=0.189 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHH---HHHhcCCeEEEEee----------CCCccc---cCCCCHHHHHHHHHHHHHhhhhcccccccc
Q 017943 70 DHATVTRITQEVVE---DFASENIVYLELRT----------TPKRNE---SIGMSKRSYMDAVVEGLRAVSAVDVDFASR 133 (363)
Q Consensus 70 ~~e~~~~~~~~~~~---~~~~~gV~y~E~r~----------~p~~~~---~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~ 133 (363)
|.+++.++..++.+ .+.+-|.--+|+.. +|.... ..|=+.+.-..-+.+.++..++..
T Consensus 132 t~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~v------ 205 (343)
T cd04734 132 EEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAV------ 205 (343)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHc------
Confidence 56677777766665 44457889999987 675422 234455544444444444433210
Q ss_pred ccccccccccccccccccCCCCCCcEEEEEEE--eeCCCCHHHHHHHHHHHHhhCCCc-eEEEecCCCCC--C-------
Q 017943 134 SIDVRRPVNTKNMNDACNGTRGKKIYVRLLLS--IDRRETTEAAMETVKLALEMRDLG-VVGIDLSGNPT--K------- 201 (363)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~--~~r~~~~e~~~~~~~~a~~~~~~~-vvGidl~g~e~--~------- 201 (363)
...+.+.+|+-.. +....+.++..+.++...+. + +.-+.+++.-. .
T Consensus 206 -------------------g~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~---G~vd~i~vs~g~~~~~~~~~~~~ 263 (343)
T cd04734 206 -------------------GPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAE---GLIDYVNVSAGSYYTLLGLAHVV 263 (343)
T ss_pred -------------------CCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhc---CCCCEEEeCCCCCCccccccccc
Confidence 1233445554432 11113344554444444332 3 44566643211 0
Q ss_pred ----CChhhHHHHHHHHHH-cCCceeeecCCCCChhhHHHHHhcC-CCeee--EecccCHHHHHHHhcCCC-cEEEcccc
Q 017943 202 ----GEWTTFLPALKFARE-QGLQITLHCGEIPNKEEIQSMLDFL-PQRIG--HACCFEEEEWRKLKSSKI-PVEICLTS 272 (363)
Q Consensus 202 ----~~~~~~~~~~~~A~~-~gl~~~~HagE~~~~~~i~~~l~~g-~~rig--Hg~~~~~~~~~~l~~~~i-~ve~cPtS 272 (363)
.+...+....+..++ .++|+..- |....++...++++.+ ++-++ -+...+|+....+++... .+-.|-..
T Consensus 264 ~~~~~~~~~~~~~~~~ik~~~~ipvi~~-G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~~g~~~~i~~C~~C 342 (343)
T cd04734 264 PSMGMPPGPFLPLAARIKQAVDLPVFHA-GRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKAREGREDDIRPCIGC 342 (343)
T ss_pred CCCCCCcchhHHHHHHHHHHcCCCEEee-CCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHHcCCccCcCcCcCC
Confidence 011122334444443 36776653 5555566677777754 66654 445568888888877653 23335443
No 353
>PRK07369 dihydroorotase; Provisional
Probab=30.31 E-value=5.6e+02 Score=25.50 Aligned_cols=151 Identities=13% Similarity=0.144 Sum_probs=81.4
Q ss_pred ceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCC---------C-----------hh-----hHHHHHhc---
Q 017943 189 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIP---------N-----------KE-----EIQSMLDF--- 240 (363)
Q Consensus 189 ~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~---------~-----------~~-----~i~~~l~~--- 240 (363)
++++|- .+.. ..+...+.++++.+++.|.++.+|+-... + |. .+..++.+
T Consensus 148 Gv~~f~-~~~~-~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~ 225 (418)
T PRK07369 148 GVVGFT-DGQP-LENLALLRRLLEYLKPLGKPVALWPCDRSLAGNGVMREGLLALRLGLPGDPASAETTALAALLELVAA 225 (418)
T ss_pred CCEEEE-CCCc-CCCHHHHHHHHHHHHhcCCeEEEecCChhhhhcCcccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 677875 2222 12445788899999999999999983211 0 10 11222222
Q ss_pred -CCCeeeEecccC-H---HHHHHHhcCC--CcEEEccccccccc-cccC----CC-CccHH---------HHHHcCCCEE
Q 017943 241 -LPQRIGHACCFE-E---EEWRKLKSSK--IPVEICLTSNIRTE-TISS----LD-IHHFV---------DLYKAQHPLV 298 (363)
Q Consensus 241 -g~~rigHg~~~~-~---~~~~~l~~~~--i~ve~cPtSN~~l~-~~~~----~~-~~pi~---------~l~~~Gv~v~ 298 (363)
|+. -|-++++ . ++++..+++| +..|+||-.=.... .+.. +. .+|++ +.+..|.-=+
T Consensus 226 ~~~~--~hi~HvSs~~~~~~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~~~~~~kv~PPLR~~~d~~aL~~~l~~G~Id~ 303 (418)
T PRK07369 226 IGTP--VHLMRISTARSVELIAQAKARGLPITASTTWMHLLLDTEALASYDPNLRLDPPLGNPSDRQALIEGVRTGVIDA 303 (418)
T ss_pred HCCc--EEEEeCCCHHHHHHHHHHHHcCCCeEEEecHHHHhccHHHHhccCCCcEECCCCCCHHHHHHHHHHHhcCCCCE
Confidence 321 3444443 3 3455556565 67799996322111 0100 01 13433 3456677779
Q ss_pred ecCCCCCccC------------------CChHHHHHHHHHHCCCCHHHHH-HHHHHHHHHcCCC
Q 017943 299 LCTDDSGVFS------------------TSVSREYDLAASAFSLGRREMF-QLAKSAVKFIFAN 343 (363)
Q Consensus 299 l~TDd~~~~~------------------~~l~~E~~~~~~~~~l~~~~l~-~l~~na~~~sf~~ 343 (363)
|+||-..... +.|..-+..+....+++.+++. .++.|.++..-++
T Consensus 304 i~SDHaP~~~~~K~~~~~~~~~G~~G~e~~l~~~~~~~v~~~~i~l~~~v~~~s~nPA~~lgl~ 367 (418)
T PRK07369 304 IAIDHAPYTYEEKTVAFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALSTNPARCLGQE 367 (418)
T ss_pred EEcCCCCCCHHHccCCHhHCCCCceeHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCC
Confidence 9999644321 0122223334444578998855 5568888887664
No 354
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=30.25 E-value=2.1e+02 Score=28.41 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=46.9
Q ss_pred EEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecC-CCCCCCChhhHHHHHHHHHHcCCceeeecCC
Q 017943 160 VRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLS-GNPTKGEWTTFLPALKFAREQGLQITLHCGE 227 (363)
Q Consensus 160 ~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~-g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE 227 (363)
+.++++...+...+.-..-+++|.+. +|.||.|. |.........+..+|+.|+..|+++.+...-
T Consensus 4 AH~mvgn~~~yt~~dw~~di~~A~~~---GIDgFaLNig~~d~~~~~~l~~a~~AA~~~gFKlf~SfD~ 69 (386)
T PF03659_consen 4 AHFMVGNTYNYTQEDWEADIRLAQAA---GIDGFALNIGSSDSWQPDQLADAYQAAEAVGFKLFFSFDM 69 (386)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHc---CCCEEEEecccCCcccHHHHHHHHHHHHhcCCEEEEEecc
Confidence 44566666666777777778888765 67787764 3233345688999999999999998888653
No 355
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=30.20 E-value=1.5e+02 Score=30.16 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=44.3
Q ss_pred CCCCcEEEEEEEee--CCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCC
Q 017943 154 RGKKIYVRLLLSID--RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE 227 (363)
Q Consensus 154 ~~~gi~~~li~~~~--r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE 227 (363)
.-.|+..+...... ...+++...+.++... ..+ +-++.+|....+..+.+.++.+.|+++|+.+|+-|+=
T Consensus 175 ~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t---~~g-~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~ 246 (460)
T COG0076 175 RYLGLGLRRVPTVPTDYRIDVDALEEAIDENT---IGG-VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAF 246 (460)
T ss_pred HHhCCCceeEEeccCccccCHHHHHHHHHhhc---cCc-eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccc
Confidence 34566666665553 3344554444444332 112 2244568777778899999999999999998887753
No 356
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=30.05 E-value=4.3e+02 Score=24.06 Aligned_cols=142 Identities=12% Similarity=0.058 Sum_probs=77.1
Q ss_pred CceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEeccc--CHHHHHHHhcC---
Q 017943 188 LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSS--- 262 (363)
Q Consensus 188 ~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~--~~~~~~~l~~~--- 262 (363)
+.+.=+||.+.+. ....+.-+-+.++..++|+.+=.| ..+.+.+..++.+|+++++-|..+ +|+.+..+.++
T Consensus 47 ~~l~ivDLd~~~g--~~~n~~~i~~i~~~~~~pv~vgGG-irs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~ 123 (241)
T PRK14024 47 EWIHLVDLDAAFG--RGSNRELLAEVVGKLDVKVELSGG-IRDDESLEAALATGCARVNIGTAALENPEWCARVIAEHGD 123 (241)
T ss_pred CEEEEEeccccCC--CCccHHHHHHHHHHcCCCEEEcCC-CCCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhh
Confidence 4577788887652 223444445556677888887544 234567788888999999888764 67766555432
Q ss_pred CCcEEEcccc-ccccccccCCCCcc---HHHHHHcCCCEEecCCC--CCc-cCCChHHHHHHHHHHCC---------CCH
Q 017943 263 KIPVEICLTS-NIRTETISSLDIHH---FVDLYKAQHPLVLCTDD--SGV-FSTSVSREYDLAASAFS---------LGR 326 (363)
Q Consensus 263 ~i~ve~cPtS-N~~l~~~~~~~~~p---i~~l~~~Gv~v~l~TDd--~~~-~~~~l~~E~~~~~~~~~---------l~~ 326 (363)
++.+.+--.. .+.+.++..-...| ++.+.+.|+.-.+-||- .+. .+.+ ++-+..+.+..+ .|.
T Consensus 124 ~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d-~~~i~~i~~~~~ipviasGGi~s~ 202 (241)
T PRK14024 124 RVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGPN-LELLREVCARTDAPVVASGGVSSL 202 (241)
T ss_pred hEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCCC-HHHHHHHHhhCCCCEEEeCCCCCH
Confidence 2433221111 12222221111122 45677889886555552 222 2332 333344433322 377
Q ss_pred HHHHHHH
Q 017943 327 REMFQLA 333 (363)
Q Consensus 327 ~~l~~l~ 333 (363)
+|+.++.
T Consensus 203 ~D~~~l~ 209 (241)
T PRK14024 203 DDLRALA 209 (241)
T ss_pred HHHHHHh
Confidence 8887764
No 357
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=29.98 E-value=1.5e+02 Score=23.87 Aligned_cols=72 Identities=7% Similarity=-0.017 Sum_probs=35.0
Q ss_pred eEecccCHHHHHHHhc-CCCcEEEccccccccccccCCCCccHH-HHHHcCCCEEecCCCC-CccC-CChHHHHHHHHHH
Q 017943 246 GHACCFEEEEWRKLKS-SKIPVEICLTSNIRTETISSLDIHHFV-DLYKAQHPLVLCTDDS-GVFS-TSVSREYDLAASA 321 (363)
Q Consensus 246 gHg~~~~~~~~~~l~~-~~i~ve~cPtSN~~l~~~~~~~~~pi~-~l~~~Gv~v~l~TDd~-~~~~-~~l~~E~~~~~~~ 321 (363)
|+.++.++...+.|.+ .|++++.+ .++-. + +...+. .+.+..+...|+|-+| +-.. ..-...++.++..
T Consensus 27 Gf~i~AT~gTa~~L~~~~Gi~v~~v-k~~~~-~-----g~~~i~~~i~~g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~ 99 (115)
T cd01422 27 RHRLVATGTTGLLIQEATGLTVNRM-KSGPL-G-----GDQQIGALIAEGEIDAVIFFRDPLTAQPHEPDVKALLRLCDV 99 (115)
T ss_pred CCEEEEechHHHHHHHhhCCcEEEE-ecCCC-C-----chhHHHHHHHcCceeEEEEcCCCCCCCcccccHHHHHHHHHH
Confidence 4555556666677777 77777655 32111 1 112233 3334445667777665 3222 2223444555544
Q ss_pred CCC
Q 017943 322 FSL 324 (363)
Q Consensus 322 ~~l 324 (363)
.+.
T Consensus 100 ~~I 102 (115)
T cd01422 100 YNI 102 (115)
T ss_pred cCC
Confidence 443
No 358
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=29.78 E-value=4.9e+02 Score=26.27 Aligned_cols=99 Identities=15% Similarity=0.046 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeE
Q 017943 168 RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGH 247 (363)
Q Consensus 168 r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigH 247 (363)
|..+++...+-++...+.. .++--|-+.++........+.++++..++.|+.+...+.-..+++.+..+-+.|..++.-
T Consensus 225 r~rs~e~V~~Ei~~~~~~~-~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~v~i 303 (472)
T TIGR03471 225 RTRSAESVIEEVKYALENF-PEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWSCNARANVDYETLKVMKENGLRLLLV 303 (472)
T ss_pred EeCCHHHHHHHHHHHHHhc-CCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 5567777666666554421 122223333433334556667777777777776654432222333333333478888877
Q ss_pred eccc-CH----------------HHHHHHhcCCCcEE
Q 017943 248 ACCF-EE----------------EEWRKLKSSKIPVE 267 (363)
Q Consensus 248 g~~~-~~----------------~~~~~l~~~~i~ve 267 (363)
|+.. ++ +.++.+++.||.+.
T Consensus 304 GiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~ 340 (472)
T TIGR03471 304 GYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVH 340 (472)
T ss_pred cCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEE
Confidence 7643 33 24566777777543
No 359
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=29.72 E-value=1.1e+02 Score=20.45 Aligned_cols=38 Identities=8% Similarity=0.045 Sum_probs=27.1
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 017943 316 DLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDL 356 (363)
Q Consensus 316 ~~~~~~~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~ 356 (363)
...++..|+|...+-+...+. ..++++.|+++++..++
T Consensus 3 ~dIA~~agvS~~TVSr~ln~~---~~vs~~tr~rI~~~a~~ 40 (46)
T PF00356_consen 3 KDIAREAGVSKSTVSRVLNGP---PRVSEETRERILEAAEE 40 (46)
T ss_dssp HHHHHHHTSSHHHHHHHHTTC---SSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHhCC---CCCCHHHHHHHHHHHHH
Confidence 456677899999987776555 56777777776665554
No 360
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=29.69 E-value=4.2e+02 Score=23.88 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHcCCceeeec
Q 017943 206 TFLPALKFAREQGLQITLHC 225 (363)
Q Consensus 206 ~~~~~~~~A~~~gl~~~~Ha 225 (363)
.++++.+.|++.|+.+.++.
T Consensus 124 ~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 124 NLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHhcCCEEEEEE
Confidence 36677788999999999885
No 361
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=29.56 E-value=3.7e+02 Score=25.65 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHH-cCC-ceeeecCCCCChhhHHHHHhcCCCeeeE
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFARE-QGL-QITLHCGEIPNKEEIQSMLDFLPQRIGH 247 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~-~gl-~~~~HagE~~~~~~i~~~l~~g~~rigH 247 (363)
.+.++....++.+.+. ++..|.+.|.|.... ..+.++++.+++ .|+ .+++...-..-.+.+....+.|.+++.-
T Consensus 43 ls~eei~~~i~~~~~~---gv~~V~ltGGEPll~-~~l~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~v~I 118 (334)
T TIGR02666 43 LTFEEIERLVRAFVGL---GVRKVRLTGGEPLLR-KDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKRVNV 118 (334)
T ss_pred CCHHHHHHHHHHHHHC---CCCEEEEECcccccc-CCHHHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCeEEE
Confidence 4566777777766554 455666777655433 346677776665 466 5655441111112223333457777664
Q ss_pred ec
Q 017943 248 AC 249 (363)
Q Consensus 248 g~ 249 (363)
.+
T Consensus 119 Sl 120 (334)
T TIGR02666 119 SL 120 (334)
T ss_pred ec
Confidence 44
No 362
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=29.47 E-value=4.7e+02 Score=25.26 Aligned_cols=94 Identities=16% Similarity=0.205 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCChHHHHHHH--HHHCCCCH----
Q 017943 253 EEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSVSREYDLA--ASAFSLGR---- 326 (363)
Q Consensus 253 ~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~--~~~~~l~~---- 326 (363)
++=+++|++-++.+-..-.- - +..-+-.++..|+||.|++++|.... + .|.-.- ...-.++.
T Consensus 218 ~eYl~lL~~~Dl~~f~~~RQ---Q------giGnl~lLi~~G~~v~l~r~n~fwqd--l-~e~gv~Vlf~~d~L~~~~v~ 285 (322)
T PRK02797 218 DDYLALLRQCDLGYFIFARQ---Q------GIGTLCLLIQLGKPVVLSRDNPFWQD--L-TEQGLPVLFTGDDLDEDIVR 285 (322)
T ss_pred HHHHHHHHhCCEEEEeechh---h------HHhHHHHHHHCCCcEEEecCCchHHH--H-HhCCCeEEecCCcccHHHHH
Confidence 34566677666666433321 0 12345556666666666666653210 0 000000 00001121
Q ss_pred ---HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhh
Q 017943 327 ---REMFQLAKSAVKFIFANGRVKEDLKEIFDLAEKK 360 (363)
Q Consensus 327 ---~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~~ 360 (363)
.++..+.++.|. |.++.-.+.|++.+..++.+
T Consensus 286 e~~rql~~~dk~~I~--Ff~pn~~~~W~~~l~~~~g~ 320 (322)
T PRK02797 286 EAQRQLASVDKNIIA--FFSPNYLQGWRNALAIAAGE 320 (322)
T ss_pred HHHHHHHhhCcceee--ecCHhHHHHHHHHHHHhhCC
Confidence 123444455555 88998888898888877654
No 363
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=29.12 E-value=3.9e+02 Score=26.02 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=45.9
Q ss_pred CChhhHHHHHHHHH-HcCCceeeecCCCCChhhHHHHHhcCCCeeeEecccCH----------------HHHHHHhcCCC
Q 017943 202 GEWTTFLPALKFAR-EQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCFEE----------------EEWRKLKSSKI 264 (363)
Q Consensus 202 ~~~~~~~~~~~~A~-~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~~~----------------~~~~~l~~~~i 264 (363)
..++.+.++++.-+ +.|+.+.+-.|... .+...+.-+.|++|+-|-.-.++ +.++.+++.|+
T Consensus 115 ~~~~~i~~~v~~Vk~~~~le~c~slG~l~-~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi 193 (335)
T COG0502 115 RDMEEVVEAIKAVKEELGLEVCASLGMLT-EEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGI 193 (335)
T ss_pred ccHHHHHHHHHHHHHhcCcHHhhccCCCC-HHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCC
Confidence 45566777777766 78999999999544 45556666789999999654333 35788888887
Q ss_pred cE
Q 017943 265 PV 266 (363)
Q Consensus 265 ~v 266 (363)
.+
T Consensus 194 ~v 195 (335)
T COG0502 194 EV 195 (335)
T ss_pred cc
Confidence 55
No 364
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=29.00 E-value=3.8e+02 Score=25.07 Aligned_cols=76 Identities=13% Similarity=0.229 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCC-ceeeecCCCCChhhHHHHHhcCCCeeeE
Q 017943 169 RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL-QITLHCGEIPNKEEIQSMLDFLPQRIGH 247 (363)
Q Consensus 169 ~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl-~~~~HagE~~~~~~i~~~l~~g~~rigH 247 (363)
..+.++....++.+... ++-.+.+.|.|....+ .+.++++.+++.|+ .+++-..-..-.+.+....+.|.+++.-
T Consensus 39 ~ls~eei~~~i~~~~~~---gi~~I~~tGGEPll~~-~l~~iv~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~i 114 (302)
T TIGR02668 39 ELSPEEIERIVRVASEF---GVRKVKITGGEPLLRK-DLIEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNV 114 (302)
T ss_pred cCCHHHHHHHHHHHHHc---CCCEEEEECccccccc-CHHHHHHHHHhCCCceEEEEcCchHHHHHHHHHHHCCCCEEEE
Confidence 35667776666665544 3445667776654433 46778888888876 5555331111112222333457776643
Q ss_pred e
Q 017943 248 A 248 (363)
Q Consensus 248 g 248 (363)
.
T Consensus 115 S 115 (302)
T TIGR02668 115 S 115 (302)
T ss_pred E
Confidence 3
No 365
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.95 E-value=4.3e+02 Score=23.77 Aligned_cols=151 Identities=9% Similarity=-0.004 Sum_probs=80.2
Q ss_pred EEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCC
Q 017943 164 LSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQ 243 (363)
Q Consensus 164 ~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~ 243 (363)
+.+.|..+++.+.+.++.+.+. ++..+.+. . .++.-+..+-+..++++ .+.+=+|-...++....+++.|++
T Consensus 18 iaV~r~~~~~~a~~i~~al~~~---Gi~~iEit---l-~~~~~~~~I~~l~~~~p-~~~IGAGTVl~~~~a~~a~~aGA~ 89 (212)
T PRK05718 18 VPVIVINKLEDAVPLAKALVAG---GLPVLEVT---L-RTPAALEAIRLIAKEVP-EALIGAGTVLNPEQLAQAIEAGAQ 89 (212)
T ss_pred EEEEEcCCHHHHHHHHHHHHHc---CCCEEEEe---c-CCccHHHHHHHHHHHCC-CCEEEEeeccCHHHHHHHHHcCCC
Confidence 4457888888888888777654 33333332 1 12222333333333443 455556655566677778888876
Q ss_pred eeeEecccCHHHHHHHhcCCCcEEEccccccccccccCCCCcc--HHHHHHcCCCEEecCCCCCccCCChHHHHHHHHH-
Q 017943 244 RIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHH--FVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAAS- 320 (363)
Q Consensus 244 rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~p--i~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~- 320 (363)
=+-== .+++++++...+.++++. | |. ..| +...++.|..+.-=-+...+.+.+..+.++-...
T Consensus 90 FivsP-~~~~~vi~~a~~~~i~~i--P------G~-----~TptEi~~a~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~p~ 155 (212)
T PRK05718 90 FIVSP-GLTPPLLKAAQEGPIPLI--P------GV-----STPSELMLGMELGLRTFKFFPAEASGGVKMLKALAGPFPD 155 (212)
T ss_pred EEECC-CCCHHHHHHHHHcCCCEe--C------CC-----CCHHHHHHHHHCCCCEEEEccchhccCHHHHHHHhccCCC
Confidence 53211 246688888888887663 2 11 123 6777888877533222111112333333322211
Q ss_pred -----HCCCCHHHHHHHHHHH
Q 017943 321 -----AFSLGRREMFQLAKSA 336 (363)
Q Consensus 321 -----~~~l~~~~l~~l~~na 336 (363)
.-|++.+.+......+
T Consensus 156 ~~~~ptGGV~~~ni~~~l~ag 176 (212)
T PRK05718 156 VRFCPTGGISPANYRDYLALP 176 (212)
T ss_pred CeEEEeCCCCHHHHHHHHhCC
Confidence 1377777776665544
No 366
>TIGR03586 PseI pseudaminic acid synthase.
Probab=28.93 E-value=2e+02 Score=27.82 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=15.0
Q ss_pred ChhhHHHHHHHHHHcCCceee
Q 017943 203 EWTTFLPALKFAREQGLQITL 223 (363)
Q Consensus 203 ~~~~~~~~~~~A~~~gl~~~~ 223 (363)
+.+.+.++++.+++.|+.+..
T Consensus 75 ~~e~~~~L~~~~~~~Gi~~~s 95 (327)
T TIGR03586 75 PWEWHKELFERAKELGLTIFS 95 (327)
T ss_pred CHHHHHHHHHHHHHhCCcEEE
Confidence 456667777778888877764
No 367
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=28.75 E-value=4.7e+02 Score=24.19 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhh
Q 017943 79 QEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAV 123 (363)
Q Consensus 79 ~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~ 123 (363)
.+...++.++|..++++=..........++.++-++.+...++.+
T Consensus 27 ~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i 71 (257)
T cd00739 27 VAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEAL 71 (257)
T ss_pred HHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 344556678999999995322211234677777777776666654
No 368
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=28.25 E-value=4e+02 Score=25.21 Aligned_cols=79 Identities=20% Similarity=0.159 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCCh-hhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEec
Q 017943 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEW-TTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHAC 249 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~-~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~ 249 (363)
+|+++.+.++..- -+..=++|+-+..-+...| -.|..+-+..+..++|+.+|-|=..+.+.++.++..|...|--++
T Consensus 156 ~pe~a~~Fv~~Tg--vD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 233 (284)
T PRK12857 156 DPEEARRFVEETG--VDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGVRKVNIDT 233 (284)
T ss_pred CHHHHHHHHHHHC--CCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 4667766664331 0111233443322232222 345555555566699999998765566778888888887776666
Q ss_pred cc
Q 017943 250 CF 251 (363)
Q Consensus 250 ~~ 251 (363)
.+
T Consensus 234 ~~ 235 (284)
T PRK12857 234 NI 235 (284)
T ss_pred HH
Confidence 54
No 369
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=28.15 E-value=7.1e+02 Score=26.04 Aligned_cols=119 Identities=12% Similarity=0.060 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEEEEEEE---eeCCCCHHHHHHHHHH
Q 017943 105 IGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYVRLLLS---IDRRETTEAAMETVKL 181 (363)
Q Consensus 105 ~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~li~~---~~r~~~~e~~~~~~~~ 181 (363)
-+.+.+++++.+.+.++-+++..... ..-.+.....-++ +.| .+++-+.++++.
T Consensus 136 l~~s~ee~l~~~~~~v~~ak~~~~~~----------------------~~~~~~~~~v~f~~Ed~~r-~d~~~l~~~~~~ 192 (564)
T TIGR00970 136 FRASRAEVQAIATDGTKLVRKCTKQA----------------------AKYPGTQWRFEYSPESFSD-TELEFAKEVCEA 192 (564)
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcccc----------------------cccccceEEEEEecccCCC-CCHHHHHHHHHH
Confidence 47899999999888887665311000 0001111112222 223 256778888888
Q ss_pred HHhhCCC---ceEEEecCCCCCCCChhhHHHHHHHHHHc-----CCceeeecCCCCCh--hhHHHHHhcCCCeee
Q 017943 182 ALEMRDL---GVVGIDLSGNPTKGEWTTFLPALKFAREQ-----GLQITLHCGEIPNK--EEIQSMLDFLPQRIG 246 (363)
Q Consensus 182 a~~~~~~---~vvGidl~g~e~~~~~~~~~~~~~~A~~~-----gl~~~~HagE~~~~--~~i~~~l~~g~~rig 246 (363)
+.+.... .++-+.|...-....|..+..+++..++. ++++.+|+.-..+- .+...+++.|++++.
T Consensus 193 a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~ 267 (564)
T TIGR00970 193 VKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIE 267 (564)
T ss_pred HHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 8776321 23344444221134677888777776543 46688888654443 345667788999875
No 370
>COG2918 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=27.81 E-value=78 Score=31.93 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCeEEEEee-CCCccccCCCCHHHH
Q 017943 80 EVVEDFASENIVYLELRT-TPKRNESIGMSKRSY 112 (363)
Q Consensus 80 ~~~~~~~~~gV~y~E~r~-~p~~~~~~g~~~~~~ 112 (363)
.-++.+++.||.|+|+|. +.......|++.+++
T Consensus 314 ~~~~aL~~~GiEYiEvRslDiNPF~piGIs~~q~ 347 (518)
T COG2918 314 SPSDALLRRGIEYIEVRSLDINPFSPIGISEDQA 347 (518)
T ss_pred ChHHHHHhcCceEEEEEeeccCCCCcCCCCHHHH
Confidence 356678999999999993 222223468887664
No 371
>PRK08445 hypothetical protein; Provisional
Probab=27.73 E-value=5.1e+02 Score=25.17 Aligned_cols=74 Identities=18% Similarity=0.078 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecC-CCCCCCChhhHHHHHHHHHHcCCceeeec---CCCC---------ChhhHHHH
Q 017943 171 TTEAAMETVKLALEMRDLGVVGIDLS-GNPTKGEWTTFLPALKFAREQGLQITLHC---GEIP---------NKEEIQSM 237 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvGidl~-g~e~~~~~~~~~~~~~~A~~~gl~~~~Ha---gE~~---------~~~~i~~~ 237 (363)
++++..+.++.+.+.... .+-+. |.....+.+.+.++++..++..-.+.+|+ +|.. .++.+...
T Consensus 74 ~~eeI~~~~~~a~~~g~~---~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~L 150 (348)
T PRK08445 74 SFEEIDKKIEELLAIGGT---QILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERL 150 (348)
T ss_pred CHHHHHHHHHHHHHcCCC---EEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHH
Confidence 567777777777665433 33344 34444567788889998888765566664 1111 12223333
Q ss_pred HhcCCCeeeE
Q 017943 238 LDFLPQRIGH 247 (363)
Q Consensus 238 l~~g~~rigH 247 (363)
-+.|.+++-|
T Consensus 151 keAGl~~~~g 160 (348)
T PRK08445 151 QAKGLSSIPG 160 (348)
T ss_pred HHcCCCCCCC
Confidence 3478888755
No 372
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=27.63 E-value=5.7e+02 Score=24.73 Aligned_cols=99 Identities=9% Similarity=0.155 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCC--------------ChhhHHHHHh-cCCCee------eEeccc----------CH
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIP--------------NKEEIQSMLD-FLPQRI------GHACCF----------EE 253 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~--------------~~~~i~~~l~-~g~~ri------gHg~~~----------~~ 253 (363)
..-+++.+.|+.+|+.+-.=.|..+ +|+...+.++ -|+|.+ .||.+- +-
T Consensus 126 ~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~ 205 (321)
T PRK07084 126 ALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRF 205 (321)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCH
Confidence 4566778888888877654443321 2222333232 366654 488863 33
Q ss_pred HHHHHHhcC--CCcEEEcccccccc----------ccc---cCCCCccHHHHHHcCCC-EEecCCC
Q 017943 254 EEWRKLKSS--KIPVEICLTSNIRT----------ETI---SSLDIHHFVDLYKAQHP-LVLCTDD 303 (363)
Q Consensus 254 ~~~~~l~~~--~i~ve~cPtSN~~l----------~~~---~~~~~~pi~~l~~~Gv~-v~l~TDd 303 (363)
+.++.+.+. ++|+++-=.|..-. +-. -+....-+++..+.||. |=|+||-
T Consensus 206 d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~GI~KINi~Tdl 271 (321)
T PRK07084 206 DILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRKAAKSAVCKINIDSDG 271 (321)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHHHHHcCCceeccchHH
Confidence 556666544 57777666663211 000 02233457788888874 6666663
No 373
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=27.50 E-value=1.3e+02 Score=28.07 Aligned_cols=56 Identities=21% Similarity=0.157 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeec
Q 017943 170 ETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 225 (363)
Q Consensus 170 ~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~Ha 225 (363)
.+.+...+.++....+.....-|+-+.|.|..-.++.+.++++.+++.|+.+++-.
T Consensus 106 ~t~eel~~~i~~~~~~~~~~~~~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~T 161 (295)
T TIGR02494 106 MTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQPEFALALLQACHERGIHTAVET 161 (295)
T ss_pred CcHHHHHHHHHHHHHhcccCCCcEEeeCcchhchHHHHHHHHHHHHHcCCcEeeeC
Confidence 34555555555444433222336777777665566666788999999998776644
No 374
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=27.40 E-value=1.9e+02 Score=28.74 Aligned_cols=140 Identities=14% Similarity=0.157 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChhhHH--HHHh-cCCCe-eeEec----ccCHHHHHHHhcCCCcEEEcccc----
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIPNKEEIQ--SMLD-FLPQR-IGHAC----CFEEEEWRKLKSSKIPVEICLTS---- 272 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~--~~l~-~g~~r-igHg~----~~~~~~~~~l~~~~i~ve~cPtS---- 272 (363)
-.-+.+.+.|++.|....+|-.-..+-+.++ -++. ++|+- +.==+ ..-++.+++++++||++..-+.+
T Consensus 92 lIa~~~v~~A~~~ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~viaP~Rd~~~~R~~~i~ya~~~gIpv~~~~~~~yS~ 171 (388)
T PF00764_consen 92 LIAKKLVEVAREEGADAVAHGCTGKGNDQVRFELSIRALAPELKVIAPWRDWEFSREEEIEYAKKHGIPVPVTKKKPYSI 171 (388)
T ss_dssp HHHHHHHHHHHHHT-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-GGGHHHHHHHHHHHHHHHTT----SS---SSEE
T ss_pred HHHHHHHHHHHHcCCeEEeccCCcCCCchhHHHHHHHHhCcCCcEecccchhhhhHHHHHHHHHHcCCCCCCCCCCCCCc
Confidence 4466788999999999999954322222232 1222 44432 11000 11357899999999999776543
Q ss_pred --cccccc-----ccCCCC---------------cc-----HHHHHHcCCCEEecCCCCCccCCChHHHHHHHHHHCCCC
Q 017943 273 --NIRTET-----ISSLDI---------------HH-----FVDLYKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLG 325 (363)
Q Consensus 273 --N~~l~~-----~~~~~~---------------~p-----i~~l~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~~~l~ 325 (363)
|+.... ..+... .| +.-=.+.|+||+|+ +..+....+...+-..+-.+|+.
T Consensus 172 D~Nlwg~s~E~g~Ledp~~~~p~~~~~~t~~p~~ap~~pe~v~i~Fe~G~PVavn--G~~~~~~~li~~lN~i~G~~GvG 249 (388)
T PF00764_consen 172 DENLWGRSIEGGELEDPWNEPPEDAFEWTVDPEDAPDEPEEVTITFEKGVPVAVN--GKKMPPLELIEKLNEIGGRHGVG 249 (388)
T ss_dssp EEESSEEEEESGGGGSTTSGG-GGGSSSSTTTTTS-SS-EEEEEEEETTEEEEEC--TEEESCHHHHHHHHHHHHHTTTT
T ss_pred ccccccccccCccccccccCCCHHHhcccCChhHCCCCCeEEEEEEECcEEEEEe--cccccHHHHHHHHHHHHHhCeEC
Confidence 222111 111111 11 11113789999998 33344466777776666556642
Q ss_pred H---------------------HHHHHHHHHHHHHcCCChHH
Q 017943 326 R---------------------REMFQLAKSAVKFIFANGRV 346 (363)
Q Consensus 326 ~---------------------~~l~~l~~na~~~sf~~~~~ 346 (363)
. ..+..-+...++..-++.++
T Consensus 250 r~d~vE~r~vG~KsR~vyEaPaa~iL~~Ahr~LE~~~Ldr~~ 291 (388)
T PF00764_consen 250 RIDIVEDRIVGIKSRGVYEAPAATILIAAHRDLESLTLDREV 291 (388)
T ss_dssp EEEEEEE-TTSSEEEEEEE-HHHHHHHHHHHHHHHHHS-HHH
T ss_pred cccccccchhhhcccceecChHHHHHHHHHHHHHHHhCCHHH
Confidence 2 23555556666666666655
No 375
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=27.39 E-value=6.5e+02 Score=25.31 Aligned_cols=134 Identities=13% Similarity=0.123 Sum_probs=75.2
Q ss_pred CChhhHHHHHHHHHHcCCceeeecCC-CCChhhHHHHHhcCCCeeeEecccCHHHHHHHhcCCCcEEEcccccccccccc
Q 017943 202 GEWTTFLPALKFAREQGLQITLHCGE-IPNKEEIQSMLDFLPQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETIS 280 (363)
Q Consensus 202 ~~~~~~~~~~~~A~~~gl~~~~HagE-~~~~~~i~~~l~~g~~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~ 280 (363)
..|+.|..+.+.++++|+.++.-... ...++ .+. +-.|++ -++..++.-.+|.+.= |..-
T Consensus 268 RHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~--tdV--~l~Dtm-------GEL~l~y~~adiAFVG--------GSlv 328 (419)
T COG1519 268 RHPERFKAVENLLKRKGLSVTRRSQGDPPFSD--TDV--LLGDTM-------GELGLLYGIADIAFVG--------GSLV 328 (419)
T ss_pred CChhhHHHHHHHHHHcCCeEEeecCCCCCCCC--CcE--EEEecH-------hHHHHHHhhccEEEEC--------Cccc
Confidence 36789999999999999998876532 11111 000 000111 1455555556665531 1111
Q ss_pred CCCCccHHHHHHcCCCEEecCCCCCccC-CChHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHh
Q 017943 281 SLDIHHFVDLYKAQHPLVLCTDDSGVFS-TSVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEK 359 (363)
Q Consensus 281 ~~~~~pi~~l~~~Gv~v~l~TDd~~~~~-~~l~~E~~~~~~~~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~ 359 (363)
..+-|.+-+-...|+||..|-+ +++ +++.+.+..+ ..++..++ ..+...++++-+.+++.+++..+...++.+
T Consensus 329 ~~GGHN~LEpa~~~~pvi~Gp~---~~Nf~ei~~~l~~~--ga~~~v~~-~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~ 402 (419)
T COG1519 329 PIGGHNPLEPAAFGTPVIFGPY---TFNFSDIAERLLQA--GAGLQVED-ADLLAKAVELLLADEDKREAYGRAGLEFLA 402 (419)
T ss_pred CCCCCChhhHHHcCCCEEeCCc---cccHHHHHHHHHhc--CCeEEECC-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 1344666666777888877643 344 4444443332 13455555 555566777777777777777666666655
Q ss_pred h
Q 017943 360 K 360 (363)
Q Consensus 360 ~ 360 (363)
+
T Consensus 403 ~ 403 (419)
T COG1519 403 Q 403 (419)
T ss_pred H
Confidence 4
No 376
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=27.27 E-value=44 Score=31.10 Aligned_cols=27 Identities=37% Similarity=0.631 Sum_probs=22.5
Q ss_pred cchhcccc---CCCCCHHHHHHHHHHhccCCCC
Q 017943 9 KVELHAHL---NGSIRDSTLLELARVLGEKGVI 38 (363)
Q Consensus 9 K~eLH~HL---~Gsi~~~~l~~la~~~~~~~~~ 38 (363)
|+|||||= +|+.+|.-+.++|. .+|+.
T Consensus 3 ~~DLHvHSt~Sdg~~~p~~vv~~A~---~~g~~ 32 (258)
T COG0613 3 KADLHVHTTASDGGLTPREVVERAK---AKGVD 32 (258)
T ss_pred ceeeeEecccCCCCCCHHHHHHHHH---HcCCC
Confidence 69999997 68899999999998 46664
No 377
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=27.19 E-value=3.7e+02 Score=24.08 Aligned_cols=65 Identities=14% Similarity=0.060 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChh---hHHHHHhcCCCeeeEe-cc-----cCHHHHHHHhcCCCcEEEc
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIPNKE---EIQSMLDFLPQRIGHA-CC-----FEEEEWRKLKSSKIPVEIC 269 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~~~~---~i~~~l~~g~~rigHg-~~-----~~~~~~~~l~~~~i~ve~c 269 (363)
..+..+-+.|+++|+.+.+...+..... .+...+..+++-+--. .. ..+..++.+.+++++++.+
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~~~~ipvV~~ 89 (273)
T cd01541 16 SIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEKLGIPYVFI 89 (273)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccccccccccHHHHHHHHHCCCCEEEE
Confidence 4455666778899999988765443221 2334444566654321 11 1224567788899998765
No 378
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=26.89 E-value=3.4e+02 Score=27.38 Aligned_cols=75 Identities=19% Similarity=0.250 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHhhCC-CceEEEecCC-CCCCCChhhHHHHHHHHHHc--CCceeeecCCCCChhhHHHHHhcCCC
Q 017943 168 RRETTEAAMETVKLALEMRD-LGVVGIDLSG-NPTKGEWTTFLPALKFAREQ--GLQITLHCGEIPNKEEIQSMLDFLPQ 243 (363)
Q Consensus 168 r~~~~e~~~~~~~~a~~~~~-~~vvGidl~g-~e~~~~~~~~~~~~~~A~~~--gl~~~~HagE~~~~~~i~~~l~~g~~ 243 (363)
+..+++++.+.++......+ -.++|| +| .|....++.....+..+++. |+++.+-..-...++.+...+++|.+
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~~~~~V~i--aG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd 135 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIPQLSVVGI--AGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVG 135 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEE--ecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCC
Confidence 45678888888776665432 234444 45 44433444444555555554 78777654222224555555556655
Q ss_pred e
Q 017943 244 R 244 (363)
Q Consensus 244 r 244 (363)
.
T Consensus 136 ~ 136 (442)
T TIGR01290 136 H 136 (442)
T ss_pred e
Confidence 4
No 379
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=26.88 E-value=3.2e+02 Score=25.76 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=25.8
Q ss_pred CceEEE--ecCCCCCCCChhhHHHHHHHHHHcCCceeeec
Q 017943 188 LGVVGI--DLSGNPTKGEWTTFLPALKFAREQGLQITLHC 225 (363)
Q Consensus 188 ~~vvGi--dl~g~e~~~~~~~~~~~~~~A~~~gl~~~~Ha 225 (363)
-||.|| |..+.....-...+..+.+.|.+++|-+.+|-
T Consensus 118 ~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~LmvnfHg 157 (273)
T PF10566_consen 118 WGVKGVKIDFMDRDDQEMVNWYEDILEDAAEYKLMVNFHG 157 (273)
T ss_dssp CTEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT-EEEETT
T ss_pred cCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcCcEEEecC
Confidence 388885 54544322234678889999999999999996
No 380
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=26.54 E-value=2.1e+02 Score=21.68 Aligned_cols=47 Identities=9% Similarity=0.241 Sum_probs=31.5
Q ss_pred ChHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhcC
Q 017943 310 SVSREYDLAASAFSLGRREMFQLAKSAVKFIFANGRVKEDLKEIFDLAEKKLD 362 (363)
Q Consensus 310 ~l~~E~~~~~~~~~l~~~~l~~l~~na~~~sf~~~~~K~~l~~~~~~~~~~~~ 362 (363)
+|..++..++...|+|..+|..+-.+ -+.+...+..+-+..|.+++|
T Consensus 11 ~LG~~W~~Lar~Lgls~~~I~~i~~~------~p~~l~eQv~~mL~~W~~r~G 57 (83)
T cd08319 11 RLGPEWEQVLLDLGLSQTDIYRCKEN------HPHNVQSQIVEALVKWRQRFG 57 (83)
T ss_pred HHhhhHHHHHHHcCCCHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhcC
Confidence 46678888999999999999887543 133445555555555555443
No 381
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.54 E-value=4.8e+02 Score=23.47 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=59.2
Q ss_pred EEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCC--ceeeecCCCCChhhHHHHHhcC
Q 017943 164 LSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL--QITLHCGEIPNKEEIQSMLDFL 241 (363)
Q Consensus 164 ~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl--~~~~HagE~~~~~~i~~~l~~g 241 (363)
+.+.|..+.+.+.+.++...+- ++--+.+.= .++.-+..+-+.+++++- .+.+=+|-..+++.+..+++.|
T Consensus 16 i~vir~~~~~~a~~~~~al~~~---Gi~~iEit~----~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aG 88 (213)
T PRK06552 16 VAVVRGESKEEALKISLAVIKG---GIKAIEVTY----TNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAG 88 (213)
T ss_pred EEEEECCCHHHHHHHHHHHHHC---CCCEEEEEC----CCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcC
Confidence 3456877888888777766543 333333331 122334444444455542 3667777666777788888888
Q ss_pred CCeeeEecccCHHHHHHHhcCCCcE
Q 017943 242 PQRIGHACCFEEEEWRKLKSSKIPV 266 (363)
Q Consensus 242 ~~rigHg~~~~~~~~~~l~~~~i~v 266 (363)
++=+- .-.+++++++...++++++
T Consensus 89 A~Fiv-sP~~~~~v~~~~~~~~i~~ 112 (213)
T PRK06552 89 AQFIV-SPSFNRETAKICNLYQIPY 112 (213)
T ss_pred CCEEE-CCCCCHHHHHHHHHcCCCE
Confidence 77543 2235788888888888877
No 382
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=26.30 E-value=3.5e+02 Score=23.96 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=38.4
Q ss_pred CCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceee
Q 017943 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITL 223 (363)
Q Consensus 156 ~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~ 223 (363)
.|+.+.++ .+...+++.-.+.++.++... +.||-+... ++....+.++.+++.|+|+.+
T Consensus 27 ~g~~~~~~--~~~~~d~~~q~~~i~~~i~~~---~d~Iiv~~~----~~~~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 27 LGYEVEIV--FDAQNDPEEQIEQIEQAISQG---VDGIIVSPV----DPDSLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp HTCEEEEE--EESTTTHHHHHHHHHHHHHTT---ESEEEEESS----STTTTHHHHHHHHHTTSEEEE
T ss_pred cCCEEEEe--CCCCCCHHHHHHHHHHHHHhc---CCEEEecCC----CHHHHHHHHHHHhhcCceEEE
Confidence 45666555 456666676677888887654 445544432 224466778889999999776
No 383
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=26.28 E-value=4.8e+02 Score=23.58 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=57.0
Q ss_pred ChhhHHHHHHHHHHcCCce---eeecCCCCCh-hhHHHHHh-cCCCeeeEecccCHHHHHHHhcCCCcEEEccccccccc
Q 017943 203 EWTTFLPALKFAREQGLQI---TLHCGEIPNK-EEIQSMLD-FLPQRIGHACCFEEEEWRKLKSSKIPVEICLTSNIRTE 277 (363)
Q Consensus 203 ~~~~~~~~~~~A~~~gl~~---~~HagE~~~~-~~i~~~l~-~g~~rigHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~ 277 (363)
++++-.++.+..-+.|++. |+-. ..+ +.++.+-+ ++--.||=|+-++++..+...+.|--+.+.|..|-.+
T Consensus 23 ~~e~a~~~a~Ali~gGi~~IEITl~s---p~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~~ev- 98 (211)
T COG0800 23 DVEEALPLAKALIEGGIPAIEITLRT---PAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSPGLNPEV- 98 (211)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCC---CCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECCCCCHHH-
Confidence 4566666777667778763 3221 222 33444333 3435689999999999999999999999999655432
Q ss_pred cccCCCCccHHHHHHcCCCEEecCCC
Q 017943 278 TISSLDIHHFVDLYKAQHPLVLCTDD 303 (363)
Q Consensus 278 ~~~~~~~~pi~~l~~~Gv~v~l~TDd 303 (363)
++...++|+|+..|.=.
T Consensus 99 ---------~~~a~~~~ip~~PG~~T 115 (211)
T COG0800 99 ---------AKAANRYGIPYIPGVAT 115 (211)
T ss_pred ---------HHHHHhCCCcccCCCCC
Confidence 34455666666544433
No 384
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=26.26 E-value=27 Score=29.45 Aligned_cols=82 Identities=13% Similarity=0.123 Sum_probs=41.1
Q ss_pred cCHHHHHHHhcCCCcEEEccccccccccccC-CCCccHHHH--HHcCCCEEecCCCCCccCCChHHHHHHHHHHCCCCHH
Q 017943 251 FEEEEWRKLKSSKIPVEICLTSNIRTETISS-LDIHHFVDL--YKAQHPLVLCTDDSGVFSTSVSREYDLAASAFSLGRR 327 (363)
Q Consensus 251 ~~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~-~~~~pi~~l--~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~~~l~~~ 327 (363)
++...++.+.++|+.+|+|-..=+....... .....+..+ +..|.|+.|+|.-......--..+...+...+|++.+
T Consensus 62 ~~~~~~~~a~~~gi~~EI~~~~~l~~~~~~r~~~~~~~~~l~~~~~~~~iiiSSgA~~~~elr~P~dv~~l~~~lGl~~~ 141 (150)
T PF01876_consen 62 IKRKQARLAIERGIFFEISYSPLLRSDGSNRRNFISNARRLIRLTKKKNIIISSGASSPLELRSPRDVINLLALLGLSEE 141 (150)
T ss_dssp --HHHHHHHHHHT-EEEEESHHHHHS-HHHHHHHHHHHHHHHHHHHH--EEEE---SSGGG---HHHHHHHHHHTT--HH
T ss_pred cCHHHHHHHHHCCEEEEEEehHhhccCcHHHHHHHHHHHHHHHHhCCCCEEEEcCCCChhhCcCHHHHHHHHHHhCCCHH
Confidence 4567899999999999998865331110000 000112222 2344899999998777774333455555568999999
Q ss_pred HHHHH
Q 017943 328 EMFQL 332 (363)
Q Consensus 328 ~l~~l 332 (363)
+.++.
T Consensus 142 ~a~~a 146 (150)
T PF01876_consen 142 EAKKA 146 (150)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 87654
No 385
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=26.23 E-value=1.2e+02 Score=27.52 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=26.1
Q ss_pred EEecCCCCCCCChhhHHHHHHHHHHcCCceeeec
Q 017943 192 GIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 225 (363)
Q Consensus 192 Gidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~Ha 225 (363)
||.+.|.|..-.++.+.++++.+++.|+++.+.-
T Consensus 73 ~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~T 106 (246)
T PRK11145 73 GVTASGGEAILQAEFVRDWFRACKKEGIHTCLDT 106 (246)
T ss_pred eEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEEC
Confidence 6667787766566666788899999999887764
No 386
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=26.12 E-value=5.4e+02 Score=23.96 Aligned_cols=118 Identities=13% Similarity=0.067 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecC--CC--CChhhH----HHHHhcCCCeee
Q 017943 175 AMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCG--EI--PNKEEI----QSMLDFLPQRIG 246 (363)
Q Consensus 175 ~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~Hag--E~--~~~~~i----~~~l~~g~~rig 246 (363)
..+.++.+.+. ++..+-+.- + ..+.+...+..+.|++.|+.+....+ .. .+++.+ ..+.++|+++|.
T Consensus 93 ~~~di~~~~~~---g~~~iri~~-~-~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~ 167 (275)
T cd07937 93 VELFVEKAAKN---GIDIFRIFD-A-LNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSIC 167 (275)
T ss_pred HHHHHHHHHHc---CCCEEEEee-c-CChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 45556666554 222222221 1 12457788999999999988776542 11 123333 344557999875
Q ss_pred Eec---ccCH----HHHHHHhcC-CCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCC
Q 017943 247 HAC---CFEE----EEWRKLKSS-KIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDD 303 (363)
Q Consensus 247 Hg~---~~~~----~~~~~l~~~-~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd 303 (363)
-+= .+.| ++++.++++ ++++++=.-.|.-++ .......+++|+...=+|=+
T Consensus 168 l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA------~aN~laA~~aGa~~vd~sv~ 226 (275)
T cd07937 168 IKDMAGLLTPYAAYELVKALKKEVGLPIHLHTHDTSGLA------VATYLAAAEAGVDIVDTAIS 226 (275)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCChH------HHHHHHHHHhCCCEEEEecc
Confidence 431 1344 345566543 466665554444333 23455667899987666555
No 387
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=26.05 E-value=7e+02 Score=27.58 Aligned_cols=139 Identities=18% Similarity=0.130 Sum_probs=78.4
Q ss_pred EEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChh----hHHH--
Q 017943 163 LLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKE----EIQS-- 236 (363)
Q Consensus 163 i~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~----~i~~-- 236 (363)
++-.+|. |-+...++.|.++ ++--+.+...|...+...++ |.+ ..-.|+..+|- ++.+
T Consensus 10 vLVANRg---EIAIRvFRAa~EL---gi~TVAIys~ED~~S~HR~K-----ADE-----sY~iG~~~~Pi~aYL~IdeII 73 (1149)
T COG1038 10 VLVANRG---EIAIRVFRAANEL---GIKTVAIYSEEDRLSLHRFK-----ADE-----SYLIGEGKGPVEAYLSIDEII 73 (1149)
T ss_pred eeeeccc---hhhHHHHHHHHhc---CceEEEEeeccccchhhhcc-----ccc-----eeeecCCCCchHHhccHHHHH
Confidence 3445675 5566677777665 33344455556554432221 111 11234444441 1222
Q ss_pred --HHhcCCCeeeEeccc---CHHHHHHHhcCCCcEEEccccccccccccCCCCccHHHHHHcCCCEEecCCCCCccCCCh
Q 017943 237 --MLDFLPQRIGHACCF---EEEEWRKLKSSKIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLCTDDSGVFSTSV 311 (363)
Q Consensus 237 --~l~~g~~rigHg~~~---~~~~~~~l~~~~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~~~~~l 311 (363)
|...|++-|--|+.+ +++..+..++.||.+. -|++...-.. -+ ...--....++||||..|||.|. +-
T Consensus 74 ~iAk~~gaDaIhPGYGfLSEn~efA~~c~eaGI~FI-GP~~e~ld~~-Gd-Kv~Ar~~A~~agvPvipgt~~~~----~~ 146 (1149)
T COG1038 74 RIAKRSGADAIHPGYGFLSENPEFARACAEAGITFI-GPKPEVLDML-GD-KVKARNAAIKAGVPVIPGTDGPI----ET 146 (1149)
T ss_pred HHHHHcCCCeecCCcccccCCHHHHHHHHHcCCEEe-CCCHHHHHHh-cc-HHHHHHHHHHcCCCccCCCCCCc----cc
Confidence 333588988777753 5788999999999875 5655432110 00 11122345789999999999874 33
Q ss_pred HHHHHHHHHHCCC
Q 017943 312 SREYDLAASAFSL 324 (363)
Q Consensus 312 ~~E~~~~~~~~~l 324 (363)
.+|....++.+|+
T Consensus 147 ~ee~~~fa~~~gy 159 (1149)
T COG1038 147 IEEALEFAEEYGY 159 (1149)
T ss_pred HHHHHHHHHhcCC
Confidence 4666666676664
No 388
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=26.04 E-value=4.7e+02 Score=23.26 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChhh----HHHHHhcCCCeeeE-ecccCHHHHHHHhcCCCcEEEc
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIPNKEE----IQSMLDFLPQRIGH-ACCFEEEEWRKLKSSKIPVEIC 269 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~~~~~----i~~~l~~g~~rigH-g~~~~~~~~~~l~~~~i~ve~c 269 (363)
..+..+-+.|+++|..+.+..+... ++. +..++..+++-|.- +...++..++.+.+.|+++++.
T Consensus 16 ~~~~g~~~~a~~~g~~~~~~~~~~~-~~~~~~~i~~~~~~~vdgii~~~~~~~~~~~~~~~~~~ipvV~~ 84 (268)
T cd06270 16 PLLSGVESVARKAGKHLIITAGHHS-AEKEREAIEFLLERRCDALILHSKALSDDELIELAAQVPPLVLI 84 (268)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCc-hHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHhhCCCCEEEE
Confidence 4555666778889999888776533 221 22233345665433 3334444588888899988765
No 389
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=25.72 E-value=4.6e+02 Score=24.25 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhh
Q 017943 78 TQEVVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAV 123 (363)
Q Consensus 78 ~~~~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~ 123 (363)
+.+..+++.++|..++.+=..........++.++-++-+...++.+
T Consensus 25 ~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~ 70 (257)
T TIGR01496 25 AVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKAL 70 (257)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4445566788999999993211111234567776655666555554
No 390
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=25.56 E-value=7.1e+02 Score=25.14 Aligned_cols=107 Identities=8% Similarity=0.116 Sum_probs=61.7
Q ss_pred EEEecC---CC-CCCCChhhHHHHHHHHHHcC--CceeeecCCCCCh--hhHHHHHhcCCCee--eEec-ccCHHHHHHH
Q 017943 191 VGIDLS---GN-PTKGEWTTFLPALKFAREQG--LQITLHCGEIPNK--EEIQSMLDFLPQRI--GHAC-CFEEEEWRKL 259 (363)
Q Consensus 191 vGidl~---g~-e~~~~~~~~~~~~~~A~~~g--l~~~~HagE~~~~--~~i~~~l~~g~~ri--gHg~-~~~~~~~~~l 259 (363)
|.+.+. |. +...|.++...+.+.||++| +--.+|.|...+. ..+..++++|+|-+ .-|- ...++-++..
T Consensus 188 V~VNl~~eQg~e~HaApldE~~~Va~~Akk~gkGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEGgPFN~a~dRl~aF 267 (505)
T PF10113_consen 188 VCVNLTEEQGGEEHAAPLDEMEEVAELAKKYGKGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEGGPFNRAKDRLKAF 267 (505)
T ss_pred heEEeeeccCCcccCCCHHHHHHHHHHHHHhCCCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeCCCcccchhHHHHH
Confidence 455553 44 44568899999999999985 6678899864432 24466788888753 3332 2333333333
Q ss_pred hcC-CCcEEEccccccccccccCCCCccHHHHHHcCCCEEec
Q 017943 260 KSS-KIPVEICLTSNIRTETISSLDIHHFVDLYKAQHPLVLC 300 (363)
Q Consensus 260 ~~~-~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~v~l~ 300 (363)
++. -+.=.++|---+.|++- -..-.+-=++.|+++.|+
T Consensus 268 akaVa~sRIL~pGkVVaTNGA---YEDEcRiGLRsGLN~iit 306 (505)
T PF10113_consen 268 AKAVAASRILVPGKVVATNGA---YEDECRIGLRSGLNVIIT 306 (505)
T ss_pred HHHHHHheeeecCcEEecCCc---chHHHHHHHhhccceeec
Confidence 322 11223456554444321 123455567888887664
No 391
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=25.09 E-value=6.2e+02 Score=24.96 Aligned_cols=112 Identities=16% Similarity=0.105 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEE---EEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 017943 69 TDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (363)
Q Consensus 69 ~~~e~~~~~~~~~~~~~~~~gV~y~---E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (363)
.+++.+.++++++ +.-|+-++ |...++.. .++++-+.++.++++++.+
T Consensus 140 lsp~~~a~~~y~~----~~GG~D~IKDDE~l~~q~~-----~p~~eRv~~~~~a~~~a~~-------------------- 190 (366)
T cd08148 140 LNPKYTAEAAYAA----ALGGLDLIKDDETLTDQPF-----CPLRDRITEVAAALDRVQE-------------------- 190 (366)
T ss_pred CCHHHHHHHHHHH----HhCCCCccccccccCCCCC-----CcHHHHHHHHHHHHHHHHH--------------------
Confidence 3677777777665 44555444 44444322 3567778888888887643
Q ss_pred ccccccCCCCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCc-eEEEecCCCCCCCChhhHHHHHHHHHHcCCceeee
Q 017943 146 MNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (363)
Q Consensus 146 ~~~~~~~~~~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~-vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~H 224 (363)
+.|-+..+ ..+-+.+.++..+-.+.+.+..... .+.+.+.| ..-++.+.+.. +.+++++.|
T Consensus 191 ---------eTG~~~~y--~~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~G------~~~l~~l~~~~-~~~l~IhaH 252 (366)
T cd08148 191 ---------ETGEKKLY--AVNVTAGTFEIIERAERALELGANMLMVDVLTAG------FSALQALAEDF-EIDLPIHVH 252 (366)
T ss_pred ---------hhCCcceE--EEEccCCHHHHHHHHHHHHHhCCCEEEEeccccc------hHHHHHHHHhC-cCCcEEEec
Confidence 34433333 3344455566677777776653321 12222222 12233322222 258999999
Q ss_pred cCC
Q 017943 225 CGE 227 (363)
Q Consensus 225 agE 227 (363)
-+-
T Consensus 253 rA~ 255 (366)
T cd08148 253 RAM 255 (366)
T ss_pred ccc
Confidence 643
No 392
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=25.03 E-value=5.2e+02 Score=23.39 Aligned_cols=125 Identities=17% Similarity=0.162 Sum_probs=66.7
Q ss_pred HHHHHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCCCCCcEE
Q 017943 81 VVEDFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMNDACNGTRGKKIYV 160 (363)
Q Consensus 81 ~~~~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 160 (363)
-.++++++|..=+++=.+.......+ ++.+.+.++++++ . ..++.+
T Consensus 79 e~~~Ai~~GA~EiD~Vin~~~~~~g~------~~~v~~ei~~v~~--------------------------~--~~~~~l 124 (221)
T PRK00507 79 EAKDAIANGADEIDMVINIGALKSGD------WDAVEADIRAVVE--------------------------A--AGGAVL 124 (221)
T ss_pred HHHHHHHcCCceEeeeccHHHhcCCC------HHHHHHHHHHHHH--------------------------h--cCCceE
Confidence 34567789988888666543322222 3444444444321 0 135678
Q ss_pred EEEEEeeCCCCHHHHHHHHHHHHhhCCCce---EEEecCCCCCCCChhhHHHHHHHHHHcCCceeeec-CCCCChhhHHH
Q 017943 161 RLLLSIDRRETTEAAMETVKLALEMRDLGV---VGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC-GEIPNKEEIQS 236 (363)
Q Consensus 161 ~li~~~~r~~~~e~~~~~~~~a~~~~~~~v---vGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~Ha-gE~~~~~~i~~ 236 (363)
++|+-... .+.++.....+.+.+...+.| .|++ +.+.+++..+-+.+.+ |-++-+.+ |-....+...+
T Consensus 125 KvIlEt~~-L~~e~i~~a~~~~~~agadfIKTsTG~~----~~gat~~~v~~m~~~~---~~~~~IKasGGIrt~~~a~~ 196 (221)
T PRK00507 125 KVIIETCL-LTDEEKVKACEIAKEAGADFVKTSTGFS----TGGATVEDVKLMRETV---GPRVGVKASGGIRTLEDALA 196 (221)
T ss_pred EEEeecCc-CCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHh---CCCceEEeeCCcCCHHHHHH
Confidence 88877544 455666777777776643311 2222 1223455555554444 33333343 22333455566
Q ss_pred HHhcCCCeeeE
Q 017943 237 MLDFLPQRIGH 247 (363)
Q Consensus 237 ~l~~g~~rigH 247 (363)
.+++|++|||=
T Consensus 197 ~i~aGA~riGt 207 (221)
T PRK00507 197 MIEAGATRLGT 207 (221)
T ss_pred HHHcCcceEcc
Confidence 77789999974
No 393
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=24.53 E-value=2.9e+02 Score=24.61 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=47.8
Q ss_pred hHHHHHHHHHH--cCCceeeecCCCCChhhHHHHHhcCCCeeeEeccc--CHHHHHHHhcCCCcEEEcccc
Q 017943 206 TFLPALKFARE--QGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--EEEEWRKLKSSKIPVEICLTS 272 (363)
Q Consensus 206 ~~~~~~~~A~~--~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~--~~~~~~~l~~~~i~ve~cPtS 272 (363)
.+.++++..++ .++++.+-. ..++.+..+++.|++-|-.-..+ +++.++.+++.+.++.++++.
T Consensus 58 rl~~~l~~i~~~~~~~plSIDT---~~~~v~~~aL~~g~~~ind~~~~~~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 58 RLVPVLQAIREENPDVPLSIDT---FNPEVAEAALKAGADIINDISGFEDDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEE---SSHHHHHHHHHHTSSEEEETTTTSSSTTHHHHHHHHTSEEEEESES
T ss_pred HHHHHHHHHhccCCCeEEEEEC---CCHHHHHHHHHcCcceEEecccccccchhhhhhhcCCCEEEEEecc
Confidence 35556666664 689998865 56777788888887766554432 678899999999999999876
No 394
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=24.33 E-value=6e+02 Score=25.47 Aligned_cols=110 Identities=15% Similarity=0.014 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEE---EEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 017943 69 TDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (363)
Q Consensus 69 ~~~e~~~~~~~~~~~~~~~~gV~y~---E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (363)
.+++.+.++++++.. -|+-++ |.-.++. -.++++-+.++.++++++.+
T Consensus 147 Lsp~~~a~~~y~~~~----GGvD~IKDDE~l~~q~-----~~p~~eRv~~~~~a~~~a~~-------------------- 197 (407)
T PRK09549 147 RDLDYLKEQLRDQAL----GGVDLVKDDEILFENA-----LTPFEKRIVAGKEVLQEVYE-------------------- 197 (407)
T ss_pred CCHHHHHHHHHHHHh----cCCcceecCcCCCCCC-----CcCHHHHHHHHHHHHHHHHH--------------------
Confidence 368888888777654 444433 3333322 23566778888888887643
Q ss_pred ccccccCCCCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCc-eEEEecCCCCCCCChhhHHHHHHHHH--HcCCcee
Q 017943 146 MNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAR--EQGLQIT 222 (363)
Q Consensus 146 ~~~~~~~~~~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~-vvGidl~g~e~~~~~~~~~~~~~~A~--~~gl~~~ 222 (363)
+.|-+..+. ++-+.+.++..+..+.+.+..... .+.+.+.| ..-+.. +++ +.+++++
T Consensus 198 ---------eTG~~~~y~--~NiT~~~~em~~ra~~a~~~G~~~~m~~~~~~G------~~al~~---l~~~~~~~lpIh 257 (407)
T PRK09549 198 ---------TTGHKTLYA--VNLTGRTFELKEKAKRAAEAGADALLFNVFAYG------LDVLQS---LAEDPEIPVPIM 257 (407)
T ss_pred ---------hhCCcceEE--EecCCCHHHHHHHHHHHHHcCCCeEEEeccccc------hHHHHH---HHhcCCCCcEEE
Confidence 344433333 344455566666677776643221 12222222 122322 233 4578888
Q ss_pred eecCC
Q 017943 223 LHCGE 227 (363)
Q Consensus 223 ~HagE 227 (363)
.|-+=
T Consensus 258 aHra~ 262 (407)
T PRK09549 258 AHPAV 262 (407)
T ss_pred ecCCc
Confidence 88543
No 395
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=24.30 E-value=4.9e+02 Score=22.91 Aligned_cols=64 Identities=19% Similarity=0.181 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChhh----HHHHHhcCCCeeeEe-cccCHHHHHHHhcCCCcEEEc
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIPNKEE----IQSMLDFLPQRIGHA-CCFEEEEWRKLKSSKIPVEIC 269 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~~~~~----i~~~l~~g~~rigHg-~~~~~~~~~~l~~~~i~ve~c 269 (363)
..+..+-+.++++|+.+.+...+.. ++. +...+..+++-+--. ...++..++.+++.++++..+
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~-~~~~~~~i~~l~~~~~dgii~~~~~~~~~~~~~~~~~~ipvv~~ 84 (259)
T cd01542 16 RTVKGILAALYENGYQMLLMNTNFS-IEKEIEALELLARQKVDGIILLATTITDEHREAIKKLNVPVVVV 84 (259)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCC-HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhcCCCCEEEE
Confidence 3444555668889999888765432 322 223333456654333 222456778888889988765
No 396
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=24.05 E-value=1.3e+02 Score=24.08 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=33.1
Q ss_pred ChhhHHHHHhcCCCe--eeEec---ccCHHHHHHHhcCCCcEEEcccccc
Q 017943 230 NKEEIQSMLDFLPQR--IGHAC---CFEEEEWRKLKSSKIPVEICLTSNI 274 (363)
Q Consensus 230 ~~~~i~~~l~~g~~r--igHg~---~~~~~~~~~l~~~~i~ve~cPtSN~ 274 (363)
.++++...+...++- +|.|- ..+++.++.+.++||.+|+-+|.+.
T Consensus 41 ~~e~l~~l~~~~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~~A 90 (109)
T cd05560 41 TAAHFEALLALQPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQAA 90 (109)
T ss_pred CHHHHHHHHhcCCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHHHH
Confidence 345566555556654 56664 3578999999999999999998765
No 397
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=23.81 E-value=5.7e+02 Score=25.62 Aligned_cols=112 Identities=13% Similarity=0.028 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHH---HHHhcCCeEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 017943 69 TDHATVTRITQEVVE---DFASENIVYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (363)
Q Consensus 69 ~~~e~~~~~~~~~~~---~~~~~gV~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (363)
.+++.+.++++++.. |++||- |.-.++. -.++++-+.++.++++++.+
T Consensus 152 l~~~~~A~~~y~~~~GGvD~IKDD----E~l~dq~-----~~p~~~Rv~~~~~a~~~a~~-------------------- 202 (407)
T TIGR03332 152 RDLGYLKEQLRQQALGGVDLVKDD----EILFETG-----LAPFEKRITEGKEVLQEVYE-------------------- 202 (407)
T ss_pred CCHHHHHHHHHHHhccCcccccCC----CCCCCCC-----CCCHHHHHHHHHHHHHHHHH--------------------
Confidence 357777777776654 444443 3333322 23567778888898887643
Q ss_pred ccccccCCCCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCc-eEEEecCCCCCCCChhhHHHHHHHHHHcCCceeee
Q 017943 146 MNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLG-VVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLH 224 (363)
Q Consensus 146 ~~~~~~~~~~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~-vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~H 224 (363)
+.|-+.. +.++=+.+..+..+..+.+.+..... .+.+.+.| ..-++.+-+ .++.+++++.|
T Consensus 203 ---------eTG~~~~--y~~NiT~~~~em~~ra~~a~~~G~~~~mv~~~~~G------~~~~~~l~~-~~~~~lpihaH 264 (407)
T TIGR03332 203 ---------QTGHKTL--YAVNLTGRTFDLKDKAKRAAELGADVLLFNVFAYG------LDVLQSLAE-DDEIPVPIMAH 264 (407)
T ss_pred ---------HHCCcce--EeecCCCCHHHHHHHHHHHHHhCCCEEEEeccccC------hHHHHHHHh-cCCCCcEEEEe
Confidence 3444333 33444455566666677776653221 12222223 112222222 13558999999
Q ss_pred cCC
Q 017943 225 CGE 227 (363)
Q Consensus 225 agE 227 (363)
-+-
T Consensus 265 ra~ 267 (407)
T TIGR03332 265 PAV 267 (407)
T ss_pred cCc
Confidence 643
No 398
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=23.69 E-value=6e+02 Score=23.62 Aligned_cols=22 Identities=14% Similarity=-0.047 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHcCCceeeecC
Q 017943 205 TTFLPALKFAREQGLQITLHCG 226 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~Hag 226 (363)
+-++.+.+.+++.|+++..=.-
T Consensus 66 ~gl~~L~~~~~~~Gl~~~Tev~ 87 (250)
T PRK13397 66 QGIRYLHEVCQEFGLLSVSEIM 87 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEeeC
Confidence 5578888999999999987543
No 399
>PRK12928 lipoyl synthase; Provisional
Probab=23.69 E-value=6.3e+02 Score=23.87 Aligned_cols=63 Identities=21% Similarity=0.126 Sum_probs=40.9
Q ss_pred CCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCC--------CCChhhHHHHHHHHHHcCCce
Q 017943 156 KKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPT--------KGEWTTFLPALKFAREQGLQI 221 (363)
Q Consensus 156 ~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~--------~~~~~~~~~~~~~A~~~gl~~ 221 (363)
..+...+|+++ ..+.++..++++.+.+..-+ .+.+.-.-.|. ..+|+.|...-+.|.+.|++.
T Consensus 204 i~~~s~iIvG~--GET~ed~~etl~~Lrel~~d-~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~ 274 (290)
T PRK12928 204 IPTKSGLMLGL--GETEDEVIETLRDLRAVGCD-RLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSH 274 (290)
T ss_pred ceecccEEEeC--CCCHHHHHHHHHHHHhcCCC-EEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCce
Confidence 34556677776 55677788888877766443 44444322222 147888999999999888754
No 400
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=23.62 E-value=5.8e+02 Score=23.59 Aligned_cols=92 Identities=13% Similarity=0.194 Sum_probs=48.7
Q ss_pred hhhHHHHHHHHHHcCCceeeec-CCCCChhhH----HHHH-hcCC-Ceee-EecccCHHHHHHHhcCCCcEEEccccccc
Q 017943 204 WTTFLPALKFAREQGLQITLHC-GEIPNKEEI----QSML-DFLP-QRIG-HACCFEEEEWRKLKSSKIPVEICLTSNIR 275 (363)
Q Consensus 204 ~~~~~~~~~~A~~~gl~~~~Ha-gE~~~~~~i----~~~l-~~g~-~rig-Hg~~~~~~~~~~l~~~~i~ve~cPtSN~~ 275 (363)
.+.+.+++...++.+-++.++. |.....+.. .+.+ +++. +++- .|. .++..++++..++.+ +|+...-
T Consensus 200 ~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~l~~ad~~i--~ps~~~e 275 (355)
T cd03819 200 QEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGH--CSDMPAAYALADIVV--SASTEPE 275 (355)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCC--cccHHHHHHhCCEEE--ecCCCCC
Confidence 4667777777776544455553 322211122 2222 2332 2221 222 556788888877644 6652211
Q ss_pred cccccCCCCccHHHHHHcCCCEEecCCCCCc
Q 017943 276 TETISSLDIHHFVDLYKAQHPLVLCTDDSGV 306 (363)
Q Consensus 276 l~~~~~~~~~pi~~l~~~Gv~v~l~TDd~~~ 306 (363)
+++ ..+-+.+..|+|| |+||.++.
T Consensus 276 -----~~~-~~l~EA~a~G~Pv-I~~~~~~~ 299 (355)
T cd03819 276 -----AFG-RTAVEAQAMGRPV-IASDHGGA 299 (355)
T ss_pred -----CCc-hHHHHHHhcCCCE-EEcCCCCc
Confidence 111 3577899999998 56776543
No 401
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=23.51 E-value=2.6e+02 Score=27.79 Aligned_cols=83 Identities=14% Similarity=0.122 Sum_probs=50.6
Q ss_pred CCCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChh
Q 017943 153 TRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKE 232 (363)
Q Consensus 153 ~~~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~ 232 (363)
.+..||.+++.= ..+++... .++.-+.+ -+-+...|+|.. ..-++..+.+.|+++|+++.+----. .|
T Consensus 122 l~~~Gi~v~fvd----~~d~~~~~----~aI~~nTk-avf~EtigNP~~-~v~Die~ia~iAh~~gvpliVDNT~a-tp- 189 (426)
T COG2873 122 LKRLGIEVRFVD----PDDPENFE----AAIDENTK-AVFAETIGNPGL-DVLDIEAIAEIAHRHGVPLIVDNTFA-TP- 189 (426)
T ss_pred HHhcCcEEEEeC----CCCHHHHH----HHhCcccc-eEEEEeccCCCc-cccCHHHHHHHHHHcCCcEEEecCCC-cc-
Confidence 467899888872 22344333 33332222 344455567653 44678999999999999998854211 12
Q ss_pred hHHHHHhcCCCeeeE
Q 017943 233 EIQSMLDFLPQRIGH 247 (363)
Q Consensus 233 ~i~~~l~~g~~rigH 247 (363)
.+..-++.|++-+.|
T Consensus 190 yl~rP~~hGADIVvH 204 (426)
T COG2873 190 YLCRPIEHGADIVVH 204 (426)
T ss_pred eecchhhcCCCEEEE
Confidence 445567778877644
No 402
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=23.41 E-value=6.8e+02 Score=24.99 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEE---EEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccc
Q 017943 69 TDHATVTRITQEVVEDFASENIVYL---ELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKN 145 (363)
Q Consensus 69 ~~~e~~~~~~~~~~~~~~~~gV~y~---E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (363)
.+++...+++++.+ +-||-++ |.-+||.. ...++-+..+.+.++++.
T Consensus 168 l~~e~~a~~~yE~~----~GGvD~iKDDEnl~s~~f-----~~~e~R~~~~m~~i~~ae--------------------- 217 (429)
T COG1850 168 LSPEEYAELAYELL----SGGVDFIKDDENLTSPPF-----NRFEERVAKIMEAIDKAE--------------------- 217 (429)
T ss_pred CCHHHHHHHHHHHH----hcCcceecchhhccCccc-----ccHHHHHHHHHHHHHHHH---------------------
Confidence 46778888877764 5666655 45555543 234556677777777653
Q ss_pred ccccccCCCCCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeec
Q 017943 146 MNDACNGTRGKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHC 225 (363)
Q Consensus 146 ~~~~~~~~~~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~Ha 225 (363)
++.|=+.-+.+ +-+.+.++.+.-.+++.+...+ .+=+|+.-. .+.-++.+-+. ++.|+.+++|-
T Consensus 218 --------aeTGekk~y~~--NITa~~~EM~rrae~a~elG~~-~~midi~~~----G~~a~q~lre~-~d~gl~ihaHr 281 (429)
T COG1850 218 --------AETGEKKMYAV--NITAPCEEMMRRAELAAELGAN-YVMIDIVVT----GFTALQYLRED-EDIGLAIHAHR 281 (429)
T ss_pred --------HhhCceEEEEe--eccCCHHHHHHHHHHHHHcCCC-EEEEEEEec----ccHHHHHHHhc-ccCCceEEech
Confidence 23443333333 3334467777777777776543 344454311 11223333333 66888888885
Q ss_pred C
Q 017943 226 G 226 (363)
Q Consensus 226 g 226 (363)
+
T Consensus 282 a 282 (429)
T COG1850 282 A 282 (429)
T ss_pred h
Confidence 3
No 403
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=23.41 E-value=5.1e+02 Score=24.56 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=0.0
Q ss_pred CCcEEEEEEEee--CCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc---CCceeeecCCCCC
Q 017943 156 KKIYVRLLLSID--RRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ---GLQITLHCGEIPN 230 (363)
Q Consensus 156 ~gi~~~li~~~~--r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~---gl~~~~HagE~~~ 230 (363)
.|+-.-++-.++ .+.+.+...+.++..++..-++++-.+-.|.-...+.++..++++.+.+. .+|+.+++|....
T Consensus 6 ~Gvi~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t 85 (299)
T COG0329 6 KGVIPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNST 85 (299)
T ss_pred CcceeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcH
Q ss_pred hhhH---HHHHhcCCCee
Q 017943 231 KEEI---QSMLDFLPQRI 245 (363)
Q Consensus 231 ~~~i---~~~l~~g~~ri 245 (363)
.+.+ +.+-++|++-+
T Consensus 86 ~eai~lak~a~~~Gad~i 103 (299)
T COG0329 86 AEAIELAKHAEKLGADGI 103 (299)
T ss_pred HHHHHHHHHHHhcCCCEE
No 404
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=23.32 E-value=8e+02 Score=24.99 Aligned_cols=99 Identities=12% Similarity=0.044 Sum_probs=53.9
Q ss_pred eCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcC-CceeeecCC---CC--ChhhHHHHHhc
Q 017943 167 DRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQG-LQITLHCGE---IP--NKEEIQSMLDF 240 (363)
Q Consensus 167 ~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~g-l~~~~HagE---~~--~~~~i~~~l~~ 240 (363)
.|..+++...+-++...+.. ++--|.+.++....+.+.+.++++...+.| +++...+.- .- +++-+..+-+.
T Consensus 219 ~R~rs~e~Vv~Ei~~l~~~~--gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~a 296 (497)
T TIGR02026 219 YRHRDPKKFVDEIEWLVRTH--GVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRA 296 (497)
T ss_pred eecCCHHHHHHHHHHHHHHc--CCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHh
Confidence 35567776655555443321 233344454444455667788888777666 555443321 11 22222223346
Q ss_pred CCCeeeEeccc-CH----------------HHHHHHhcCCCcEE
Q 017943 241 LPQRIGHACCF-EE----------------EEWRKLKSSKIPVE 267 (363)
Q Consensus 241 g~~rigHg~~~-~~----------------~~~~~l~~~~i~ve 267 (363)
|..++.-|+.. ++ +.++.+++.||.+.
T Consensus 297 G~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~ 340 (497)
T TIGR02026 297 GLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSE 340 (497)
T ss_pred CCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEE
Confidence 88888777643 33 34677888888653
No 405
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=23.31 E-value=5.9e+02 Score=23.46 Aligned_cols=89 Identities=11% Similarity=0.190 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHc--CCceeeecCCCCChhhHHHHHh-cCC-Ce-eeEecccCHHHHHHHhcCCCcEEEccccccccccc
Q 017943 205 TTFLPALKFAREQ--GLQITLHCGEIPNKEEIQSMLD-FLP-QR-IGHACCFEEEEWRKLKSSKIPVEICLTSNIRTETI 279 (363)
Q Consensus 205 ~~~~~~~~~A~~~--gl~~~~HagE~~~~~~i~~~l~-~g~-~r-igHg~~~~~~~~~~l~~~~i~ve~cPtSN~~l~~~ 279 (363)
+.+.+++....+. ++.+.+. |.....+.+.+.+. ++. ++ .-.|. .++..++++...+. ++|+..-
T Consensus 204 ~~li~a~~~l~~~~~~~~l~i~-G~g~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~--v~~s~~e----- 273 (360)
T cd04951 204 PNLLKAFAKLLSDYLDIKLLIA-GDGPLRATLERLIKALGLSNRVKLLGL--RDDIAAYYNAADLF--VLSSAWE----- 273 (360)
T ss_pred HHHHHHHHHHHhhCCCeEEEEE-cCCCcHHHHHHHHHhcCCCCcEEEecc--cccHHHHHHhhceE--Eeccccc-----
Confidence 4555566554443 4555553 43322334444333 342 22 12332 34566778877764 4564321
Q ss_pred cCCCCccHHHHHHcCCCEEecCCCCCc
Q 017943 280 SSLDIHHFVDLYKAQHPLVLCTDDSGV 306 (363)
Q Consensus 280 ~~~~~~pi~~l~~~Gv~v~l~TDd~~~ 306 (363)
+++ ..+-+.+..|+|| |.||.++.
T Consensus 274 -~~~-~~~~Ea~a~G~Pv-I~~~~~~~ 297 (360)
T cd04951 274 -GFG-LVVAEAMACELPV-VATDAGGV 297 (360)
T ss_pred -CCC-hHHHHHHHcCCCE-EEecCCCh
Confidence 111 3466889999988 45776543
No 406
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=23.30 E-value=5.6e+02 Score=25.21 Aligned_cols=102 Identities=25% Similarity=0.321 Sum_probs=58.7
Q ss_pred CCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCC-ceeeecCCCCChhh
Q 017943 155 GKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL-QITLHCGEIPNKEE 233 (363)
Q Consensus 155 ~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl-~~~~HagE~~~~~~ 233 (363)
..|-.+|++++. .+.++.|.+..++.||=+++ |-|.+.+ .....+..|++.++ ++.++..-..-|..
T Consensus 107 a~GadVriVYSp---------ldAl~iA~~nP~k~vVF~av-GFETTaP--~~A~~i~~A~~~~~~Nfsvl~~hkl~PPa 174 (364)
T PRK15062 107 AEGADVRIVYSP---------LDALKIARENPDKEVVFFAI-GFETTAP--ATAATLLQAKAEGLKNFSVLSSHKLVPPA 174 (364)
T ss_pred hCCCCEEEEeCH---------HHHHHHHHHCCCCeEEEEec-CchhccH--HHHHHHHHHHHcCCCCEEEEEeccccHHH
Confidence 346678888764 55677888877777777664 4676543 34445556666663 46666644344444
Q ss_pred HHHHHhcCCCee------eEeccc-CHHHHHHHhcC-CCcEEE
Q 017943 234 IQSMLDFLPQRI------GHACCF-EEEEWRKLKSS-KIPVEI 268 (363)
Q Consensus 234 i~~~l~~g~~ri------gHg~~~-~~~~~~~l~~~-~i~ve~ 268 (363)
+...++-+..+| ||-..+ -.+.++.++++ ++++++
T Consensus 175 ~~~ll~~~~~~idgfi~PGHVstI~G~~~y~~l~~~y~~P~VV 217 (364)
T PRK15062 175 MRALLEDPELRIDGFIAPGHVSTIIGTEPYEFLAEEYGIPVVV 217 (364)
T ss_pred HHHHHcCCCCCccEEEecCEeEEEeccchhHHHHHHcCCCeEE
Confidence 555444332232 676544 34456655444 777654
No 407
>PLN02858 fructose-bisphosphate aldolase
Probab=22.88 E-value=1.3e+03 Score=27.21 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChh-------------hHHHHHhc----CCCee------eEeccc------CHHH
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIPNKE-------------EIQSMLDF----LPQRI------GHACCF------EEEE 255 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~~~~-------------~i~~~l~~----g~~ri------gHg~~~------~~~~ 255 (363)
..-+++.++|+..|+.+-.=.|..++.+ ...++.+| |+|.+ .||.+- +-+.
T Consensus 1210 ~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~ 1289 (1378)
T PLN02858 1210 SYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDL 1289 (1378)
T ss_pred HHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHHH
Confidence 4567788899999988876655443211 11233332 56553 488763 2345
Q ss_pred HHHHhcC----CCcEEEccccccccccccCCCCccHHHHHHcCCC-EEecCC
Q 017943 256 WRKLKSS----KIPVEICLTSNIRTETISSLDIHHFVDLYKAQHP-LVLCTD 302 (363)
Q Consensus 256 ~~~l~~~----~i~ve~cPtSN~~l~~~~~~~~~pi~~l~~~Gv~-v~l~TD 302 (363)
++.+++. ++|+++-=.| +....-+++..+.||. |=|+||
T Consensus 1290 l~~i~~~~~~~~vpLVlHGgS--------G~~~~~~~~ai~~Gi~KiNi~T~ 1333 (1378)
T PLN02858 1290 LKELRALSSKKGVLLVLHGAS--------GLPESLIKECIENGVRKFNVNTE 1333 (1378)
T ss_pred HHHHHHHhcCCCCcEEEeCCC--------CCCHHHHHHHHHcCCeEEEeCHH
Confidence 6666554 5777654333 3344568888888884 666666
No 408
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=22.75 E-value=1e+02 Score=21.56 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=12.7
Q ss_pred HHHHHHCCCCHHHHHHHH
Q 017943 316 DLAASAFSLGRREMFQLA 333 (363)
Q Consensus 316 ~~~~~~~~l~~~~l~~l~ 333 (363)
-..++..|||.++++.+.
T Consensus 7 I~~~r~lGfsL~eI~~~l 24 (65)
T PF09278_consen 7 IRRLRELGFSLEEIRELL 24 (65)
T ss_dssp HHHHHHTT--HHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 344577999999999987
No 409
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=22.46 E-value=1.3e+02 Score=23.92 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=31.6
Q ss_pred hhhHHHHHhcC-CCe--eeEec---ccCHHHHHHHhcCCCcEEEccccccc
Q 017943 231 KEEIQSMLDFL-PQR--IGHAC---CFEEEEWRKLKSSKIPVEICLTSNIR 275 (363)
Q Consensus 231 ~~~i~~~l~~g-~~r--igHg~---~~~~~~~~~l~~~~i~ve~cPtSN~~ 275 (363)
++++...+... ++- ||-|- .++++.++.+.++||.+|+-+|.+..
T Consensus 41 ~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~aAc 91 (109)
T cd00248 41 PEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTGAAC 91 (109)
T ss_pred HHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcHHHH
Confidence 34455444444 543 45443 56899999999999999999987753
No 410
>PLN00200 argininosuccinate synthase; Provisional
Probab=22.45 E-value=7.9e+02 Score=24.57 Aligned_cols=142 Identities=11% Similarity=0.108 Sum_probs=79.5
Q ss_pred ChhhHHHHHHHHHHcCCceeeecCCC--CChhhHHHHHh-cCCCe-eeEe---ccc--CHHHHHHHhcCCCcEEEcccc-
Q 017943 203 EWTTFLPALKFAREQGLQITLHCGEI--PNKEEIQSMLD-FLPQR-IGHA---CCF--EEEEWRKLKSSKIPVEICLTS- 272 (363)
Q Consensus 203 ~~~~~~~~~~~A~~~gl~~~~HagE~--~~~~~i~~~l~-~g~~r-igHg---~~~--~~~~~~~l~~~~i~ve~cPtS- 272 (363)
.|..+..+++.|++.|..+.+|-.=. .+....+-.+. +.++- +..= ..+ -++.+++.++.||++..-|.+
T Consensus 98 Rp~i~~~lv~~A~~~G~~~VahG~tgkGnDq~rf~~~~~al~pel~ViaPlre~~~~~r~e~~~~A~~~Gipv~~~~~~~ 177 (404)
T PLN00200 98 RPLIAKAMVDIAKEVGADAVAHGATGKGNDQVRFELTFFALNPELKVVAPWREWDIKGREDLIEYAKKHNIPVPVTKKSI 177 (404)
T ss_pred hHHHHHHHHHHHHHcCCCEEEeCCcCCCCcHHHHHHHHHHhCCCCeeeCchhhcCCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 34668889999999999999985422 22222211222 23221 1110 112 357788888999998766653
Q ss_pred -----cccccccc-----CCC-CccHHHH-------------------HHcCCCEEecCCCCCccCCChHHHHHHHHHHC
Q 017943 273 -----NIRTETIS-----SLD-IHHFVDL-------------------YKAQHPLVLCTDDSGVFSTSVSREYDLAASAF 322 (363)
Q Consensus 273 -----N~~l~~~~-----~~~-~~pi~~l-------------------~~~Gv~v~l~TDd~~~~~~~l~~E~~~~~~~~ 322 (363)
|+....+. +.. ..|-..+ .++|+||+|+ +-.+...++...+-..+-..
T Consensus 178 yS~D~Nlw~~s~e~g~ledp~~~~p~~~~~~t~~~~~~p~~p~~v~i~Fe~G~pv~ln--G~~~~~~~li~~lN~i~g~~ 255 (404)
T PLN00200 178 YSRDRNLWHISYEGDILEDPANEPKEDMFMMSVSPEAAPDQPEYIEIEFEKGLPVAIN--GKTLSPATLLTKLNEIGGKH 255 (404)
T ss_pred CcccccccceecccccccCCCCCCCHHHhhccCCHhHCCCCCeEEEEEEEccEEEEEC--CeeCCHHHHHHHHHHHHhhc
Confidence 44322111 111 1121111 2789999995 43344456777776666555
Q ss_pred CCCHH---------------------HHHHHHHHHHHHcCCChHH
Q 017943 323 SLGRR---------------------EMFQLAKSAVKFIFANGRV 346 (363)
Q Consensus 323 ~l~~~---------------------~l~~l~~na~~~sf~~~~~ 346 (363)
|+..- .+...+...++..-++.++
T Consensus 256 GvGr~d~vE~r~vG~KsR~vyEaPa~~iL~~Ah~~LE~~~l~~~~ 300 (404)
T PLN00200 256 GIGRIDMVENRFVGMKSRGVYETPGGTILFAAHRELESLTLDRET 300 (404)
T ss_pred ccCcccccccccccccccceecChHHHHHHHHHHHHHHhhCCHHH
Confidence 55332 2556667777777777755
No 411
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=22.28 E-value=1.7e+02 Score=22.83 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=26.4
Q ss_pred ceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCC
Q 017943 189 GVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGE 227 (363)
Q Consensus 189 ~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE 227 (363)
.++.+++.- .+......++.++|+.+|+++..|..|
T Consensus 20 d~~~~~~~~---~GGit~~~~i~~~A~~~gi~~~~h~~~ 55 (111)
T PF13378_consen 20 DIVQIDPTR---CGGITEALRIAALAEAHGIPVMPHSME 55 (111)
T ss_dssp SEEEEBHHH---HTSHHHHHHHHHHHHHTT-EEEEBSSS
T ss_pred CEEEeCchh---cCCHHHHHHHHHHHHHhCCCEEecCCC
Confidence 467777541 123567889999999999999999973
No 412
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=22.06 E-value=6.2e+02 Score=24.98 Aligned_cols=102 Identities=23% Similarity=0.303 Sum_probs=59.6
Q ss_pred CCCcEEEEEEEeeCCCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCC-ceeeecCCCCChhh
Q 017943 155 GKKIYVRLLLSIDRRETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL-QITLHCGEIPNKEE 233 (363)
Q Consensus 155 ~~gi~~~li~~~~r~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl-~~~~HagE~~~~~~ 233 (363)
..|-.+|++++. .+.++.|.+..++.||=+++ |-|.+.+ .....+..|++.|+ ++.+|..-..-|..
T Consensus 113 a~GadVriVYSp---------ldAl~iA~~nPdk~VVF~av-GFETTaP--~~A~~i~~a~~~~~~Nfsvl~~hkl~PPa 180 (369)
T TIGR00075 113 AEGADVRIVYSP---------MDALKIAKENPDRKVVFFAI-GFETTAP--TTASTLLSAKAEDINNFFFLSAHRLVPPA 180 (369)
T ss_pred hCCCCEEEEeCH---------HHHHHHHHHCCCCeEEEEec-CchhccH--HHHHHHHHHHHcCCCcEEEEEeccccHHH
Confidence 456678888764 55777888877777777664 4676543 34555666777664 46666654444444
Q ss_pred HHHHHhcCCCee------eEeccc-CHHHHHHHhcC-CCcEEE
Q 017943 234 IQSMLDFLPQRI------GHACCF-EEEEWRKLKSS-KIPVEI 268 (363)
Q Consensus 234 i~~~l~~g~~ri------gHg~~~-~~~~~~~l~~~-~i~ve~ 268 (363)
+...++-+..+| ||-..+ -.+.++.++++ ++++++
T Consensus 181 ~~~ll~~~~~~idgfi~PGHVs~I~G~~~y~~l~~~y~~P~VV 223 (369)
T TIGR00075 181 VEALLENPAVQIDAFLAPGHVSTIIGAKPYAPIAEKYKIPIVI 223 (369)
T ss_pred HHHHHcCCCCCccEEEecCEEEEEeccchhHHHHHHcCCCeEE
Confidence 555444332222 676543 23455555543 777654
No 413
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=22.03 E-value=2.3e+02 Score=28.70 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCC-ceee
Q 017943 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGL-QITL 223 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl-~~~~ 223 (363)
+.++.+++++.....++..-..|+..|.|.+. ++++..+.+.|++.|+ ++++
T Consensus 92 t~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTv-r~DL~eiv~~a~e~g~~hVqi 144 (475)
T COG1964 92 TLEQIREMLRNLKKEHPVGANAVQFTGGEPTL-RDDLIEIIKIAREEGYDHVQL 144 (475)
T ss_pred CHHHHHHHHHHHHhcCCCCCceeEecCCCccc-hhhHHHHHHHHhhcCccEEEE
Confidence 45788889888877665456788888887754 3778889999999997 4544
No 414
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=21.99 E-value=6.1e+02 Score=24.04 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhCCCceEEEecCCC--CC-CCChhhHHHHHHHHHH---cCCceeeecCCCCChhhH---HHHHhcCC
Q 017943 172 TEAAMETVKLALEMRDLGVVGIDLSGN--PT-KGEWTTFLPALKFARE---QGLQITLHCGEIPNKEEI---QSMLDFLP 242 (363)
Q Consensus 172 ~e~~~~~~~~a~~~~~~~vvGidl~g~--e~-~~~~~~~~~~~~~A~~---~gl~~~~HagE~~~~~~i---~~~l~~g~ 242 (363)
.+.....++..+. .+|.|+-+.|. |. .-+.++.+++.+.+.+ ..+++.+|+|..+..+.+ +.+.++|+
T Consensus 28 ~~~l~~lv~~li~---~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Ga 104 (309)
T cd00952 28 LDETARLVERLIA---AGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGA 104 (309)
T ss_pred HHHHHHHHHHHHH---cCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCC
Confidence 3445556665555 36777766553 33 3466777777776554 359999999876544443 23445687
Q ss_pred Cee
Q 017943 243 QRI 245 (363)
Q Consensus 243 ~ri 245 (363)
+-+
T Consensus 105 d~v 107 (309)
T cd00952 105 DGT 107 (309)
T ss_pred CEE
Confidence 754
No 415
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=21.98 E-value=6.6e+02 Score=23.51 Aligned_cols=141 Identities=11% Similarity=0.065 Sum_probs=77.9
Q ss_pred CceEEEecCCCCCCCChhhHHHHHHHHHHcCCceeeecCCCCChhhHHHHHhcCCCeeeEeccc--C----HHHHHHHhc
Q 017943 188 LGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITLHCGEIPNKEEIQSMLDFLPQRIGHACCF--E----EEEWRKLKS 261 (363)
Q Consensus 188 ~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~~~l~~g~~rigHg~~~--~----~~~~~~l~~ 261 (363)
+.+.=+||.|. .+..+.-+-+.++ .++++.+=-|= ..+.+...+++|++|+.=|+.+ + |+.++.+.+
T Consensus 58 ~~lHvVDLdgg----~~~n~~~i~~i~~-~~~~vqvGGGI--R~e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~ 130 (262)
T PLN02446 58 TGGHVIMLGAD----DASLAAALEALRA-YPGGLQVGGGV--NSENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVR 130 (262)
T ss_pred CEEEEEECCCC----CcccHHHHHHHHh-CCCCEEEeCCc--cHHHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHH
Confidence 34667888762 2233333334444 66777664332 2366778888999998878753 4 777766655
Q ss_pred C----CCcEEEccc--cc---cccccccC-CCCcc---HHHHHHcCCCEEecCC---CCCccCCC--hHHHHHHHHHH--
Q 017943 262 S----KIPVEICLT--SN---IRTETISS-LDIHH---FVDLYKAQHPLVLCTD---DSGVFSTS--VSREYDLAASA-- 321 (363)
Q Consensus 262 ~----~i~ve~cPt--SN---~~l~~~~~-~~~~p---i~~l~~~Gv~v~l~TD---d~~~~~~~--l~~E~~~~~~~-- 321 (363)
+ .|.+.+--. .. +.+.++.. -...| +.++.+.|+.=.|.|| |..+.+.+ +..++......
T Consensus 131 ~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~~ipV 210 (262)
T PLN02446 131 LVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGIDEELVALLGEHSPIPV 210 (262)
T ss_pred HhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCCCHHHHHHHHhhCCCCE
Confidence 3 344433222 11 22332221 12233 3678889998888888 33444444 43444333211
Q ss_pred ---CCC-CHHHHHHHHHH
Q 017943 322 ---FSL-GRREMFQLAKS 335 (363)
Q Consensus 322 ---~~l-~~~~l~~l~~n 335 (363)
-|. |.+|+.++...
T Consensus 211 IASGGv~sleDi~~L~~~ 228 (262)
T PLN02446 211 TYAGGVRSLDDLERVKVA 228 (262)
T ss_pred EEECCCCCHHHHHHHHHc
Confidence 122 77888888765
No 416
>PF13918 PLDc_3: PLD-like domain
Probab=21.77 E-value=1.1e+02 Score=27.00 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhhh-ccc---cccccccc-cccccccccccccccCCCCCCcEEEEEEEeeCCCCHH
Q 017943 113 MDAVVEGLRAVSA-VDV---DFASRSID-VRRPVNTKNMNDACNGTRGKKIYVRLLLSIDRRETTE 173 (363)
Q Consensus 113 ~~~v~~~~~~~~~-~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gi~~~li~~~~r~~~~e 173 (363)
++|++..|.++++ .|. +++|...- .+..|=|..-++-.+|.-..|+++|++++.=++..+.
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP~ID~ALR~AA~~R~V~VRlLIS~W~ht~p~ 149 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWPVIDDALRRAAIERGVKVRLLISCWKHTDPS 149 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcchhHHHHHHHHHHHcCCeEEEEEeecCCCChh
Confidence 6677777766654 111 22222111 1122333344444455556799999999988876654
No 417
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=21.59 E-value=7.7e+02 Score=24.12 Aligned_cols=100 Identities=8% Similarity=0.082 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCC--------------------------ChhhHHHHHh-cCCCee------eEeccc
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIP--------------------------NKEEIQSMLD-FLPQRI------GHACCF 251 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~--------------------------~~~~i~~~l~-~g~~ri------gHg~~~ 251 (363)
..-+++.++|+..|+.+-.=.|..+ +|+...+.++ -|+|.+ .||.+-
T Consensus 123 ~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk 202 (347)
T PRK13399 123 DVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGAYK 202 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccccCCcC
Confidence 4466788999999987765543111 1222222222 366654 499873
Q ss_pred ----------CHHHHHHHhcC--CCcEEEccccccc----------ccccc---CCCCccHHHHHHcCCC-EEecCCCC
Q 017943 252 ----------EEEEWRKLKSS--KIPVEICLTSNIR----------TETIS---SLDIHHFVDLYKAQHP-LVLCTDDS 304 (363)
Q Consensus 252 ----------~~~~~~~l~~~--~i~ve~cPtSN~~----------l~~~~---~~~~~pi~~l~~~Gv~-v~l~TDd~ 304 (363)
+-+.++.+++. ++|+++-=.|.+- -|.+. +....-+++..+.||. |=|+||-.
T Consensus 203 ~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~ 281 (347)
T PRK13399 203 FTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDIR 281 (347)
T ss_pred CCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHHH
Confidence 22355555444 5777665555321 11111 1123347888888885 77777743
No 418
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=21.20 E-value=3.3e+02 Score=25.82 Aligned_cols=79 Identities=20% Similarity=0.122 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhhCCCceEEEecCCCCCCC--Ch-hhHHHHHHHHHHc-CCceeeecCCCCChhhHHHHHhcCCCeee
Q 017943 171 TTEAAMETVKLALEMRDLGVVGIDLSGNPTKG--EW-TTFLPALKFAREQ-GLQITLHCGEIPNKEEIQSMLDFLPQRIG 246 (363)
Q Consensus 171 ~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~--~~-~~~~~~~~~A~~~-gl~~~~HagE~~~~~~i~~~l~~g~~rig 246 (363)
+|+++.+.++..- .+..-++|+-+...+.. .| -.|..+-+..+.- ++|+.+|-|=..+.+.+..++..|...|-
T Consensus 156 dP~~a~~Fv~~Tg--vD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiN 233 (287)
T PF01116_consen 156 DPEEAKEFVEETG--VDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNGISKIN 233 (287)
T ss_dssp SHHHHHHHHHHHT--TSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTTEEEEE
T ss_pred CHHHHHHHHHHhC--CCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcCceEEE
Confidence 5777777665541 01112344433333333 33 3566666777777 99999998865566778888888876665
Q ss_pred Eeccc
Q 017943 247 HACCF 251 (363)
Q Consensus 247 Hg~~~ 251 (363)
=++.+
T Consensus 234 i~T~~ 238 (287)
T PF01116_consen 234 IGTEL 238 (287)
T ss_dssp ESHHH
T ss_pred EehHH
Confidence 55543
No 419
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=21.12 E-value=7.1e+02 Score=23.55 Aligned_cols=141 Identities=14% Similarity=0.136 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCC--eEEEEeeCCCccccCCCCHHHHHHHHHHHHHhhhhcccccccccccccccccccccc
Q 017943 70 DHATVTRITQEVVEDFASENI--VYLELRTTPKRNESIGMSKRSYMDAVVEGLRAVSAVDVDFASRSIDVRRPVNTKNMN 147 (363)
Q Consensus 70 ~~e~~~~~~~~~~~~~~~~gV--~y~E~r~~p~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (363)
+.+++++..++.++-+...|| ..+|+..++. + +.++++++++..
T Consensus 134 ~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~~~----------E-~~~~~~~~~~~~----------------------- 179 (304)
T PRK09485 134 SEEELQDFHRPRIEALAEAGADLLACETIPNLD----------E-AEALVELLKEEF----------------------- 179 (304)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeccCCHH----------H-HHHHHHHHHHhc-----------------------
Confidence 568888888888998889988 6777766632 2 445556665310
Q ss_pred ccccCCCCCCcEEEEEEEeeC------CCCHHHHHHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHc-CCc
Q 017943 148 DACNGTRGKKIYVRLLLSIDR------RETTEAAMETVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQ-GLQ 220 (363)
Q Consensus 148 ~~~~~~~~~gi~~~li~~~~r------~~~~e~~~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~-gl~ 220 (363)
. ++.+-+-+++.. ..+.+.+...+. .. ..+.+|++.+. .|+.+.++.+..+.. +.+
T Consensus 180 ------~--~~pv~is~~~~~~g~l~~G~~~~~~~~~l~---~~--~~~~~iGiNC~----~p~~~~~~l~~~~~~~~~p 242 (304)
T PRK09485 180 ------P--GVPAWLSFTLRDGTHISDGTPLAEAAALLA---AS--PQVVAVGVNCT----APELVTAAIAALRAVTDKP 242 (304)
T ss_pred ------C--CCcEEEEEEeCCCCcCCCCCCHHHHHHHHh---cC--CCceEEEecCC----CHHHHHHHHHHHHhccCCc
Confidence 0 111112222211 122333333332 22 23445555431 356677777666553 455
Q ss_pred eeee--cCCCCC-----------hhh----HHHHHhcCCCeeeEecccCHHHHHHHhc
Q 017943 221 ITLH--CGEIPN-----------KEE----IQSMLDFLPQRIGHACCFEEEEWRKLKS 261 (363)
Q Consensus 221 ~~~H--agE~~~-----------~~~----i~~~l~~g~~rigHg~~~~~~~~~~l~~ 261 (363)
+.+. +|+... ++. +.+.++.|+.-||=|+..+|+.++.|++
T Consensus 243 l~~~PNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iiGGCCGttP~hI~al~~ 300 (304)
T PRK09485 243 LVVYPNSGEVYDAVTKTWHGPADDASLGELAPEWYAAGARLIGGCCRTTPEDIAALAA 300 (304)
T ss_pred EEEECCCCCCCCCCCCcccCCCChHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHHHHH
Confidence 5533 443221 111 1233446888899999999988888875
No 420
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.59 E-value=3e+02 Score=25.67 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=29.2
Q ss_pred HHHHHHHHhhCCCceEEEecCCCCCCCChhhHHHHHHHHHHcCCceee
Q 017943 176 METVKLALEMRDLGVVGIDLSGNPTKGEWTTFLPALKFAREQGLQITL 223 (363)
Q Consensus 176 ~~~~~~a~~~~~~~vvGidl~g~e~~~~~~~~~~~~~~A~~~gl~~~~ 223 (363)
...++.|.+. -|.+=.+|+|... ..+.++.-.|++.|+.+.+
T Consensus 67 ~~il~~a~~~----~Vall~~GDpmvA--TTH~~L~~~A~~~Gi~v~v 108 (260)
T COG1798 67 RSILDRAKDK----DVALLVAGDPMVA--TTHVDLRIEAKRRGIEVRV 108 (260)
T ss_pred hhHHHHHhcC----CEEEEecCCccee--hhHHHHHHHHHHcCCcEEE
Confidence 5566666543 3777778887643 3577778889999988754
No 421
>PRK09060 dihydroorotase; Validated
Probab=20.45 E-value=8.6e+02 Score=24.27 Aligned_cols=57 Identities=14% Similarity=0.028 Sum_probs=33.3
Q ss_pred HHHHHHcCCCEEecCCCCCc-------------cC-CChHHHHHHHH---HHCCCCHHHHHHH-HHHHHHHcCCC
Q 017943 287 FVDLYKAQHPLVLCTDDSGV-------------FS-TSVSREYDLAA---SAFSLGRREMFQL-AKSAVKFIFAN 343 (363)
Q Consensus 287 i~~l~~~Gv~v~l~TDd~~~-------------~~-~~l~~E~~~~~---~~~~l~~~~l~~l-~~na~~~sf~~ 343 (363)
+.+.++.|+.-+|+||-... +| ..+-.-+-.+. ..-.++.+++.++ +.|+++...++
T Consensus 290 l~~al~~G~id~i~sDh~p~~~~~k~~~~~~~~~G~~g~e~~~~l~~~~v~~g~l~~~~~~~~~s~~pa~~~gl~ 364 (444)
T PRK09060 290 LWRGVRQGVVDVLGSDHAPHTLEEKAKPYPASPSGMTGVQTLVPIMLDHVNAGRLSLERFVDLTSAGPARIFGIA 364 (444)
T ss_pred HHHHHhCCCccEEecCCCCCCHHHhcCCcccCCCCcccHHHHHHHHHHHHHcCCCCHHHHHHHHhHhHHHHhCCC
Confidence 34556779888899995332 11 11111111222 2224899996655 68999888774
No 422
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=20.15 E-value=76 Score=35.07 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=21.8
Q ss_pred CCcchhccc-----cCCCCCHHHHHHHHHH
Q 017943 7 MPKVELHAH-----LNGSIRDSTLLELARV 31 (363)
Q Consensus 7 lPK~eLH~H-----L~Gsi~~~~l~~la~~ 31 (363)
|+.++||+| |+|+++++.+.+.|++
T Consensus 1 m~Fv~LH~HS~ySlLdg~~~~~elv~~A~~ 30 (874)
T PRK09532 1 MSFVGLHIHSDYSLLDGASQLPALVDRAIE 30 (874)
T ss_pred CCccccccCCcCchhhccCCHHHHHHHHHH
Confidence 567899999 6888999999999985
No 423
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=20.03 E-value=6.1e+02 Score=22.39 Aligned_cols=65 Identities=8% Similarity=0.017 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHcCCceeeecCCCCChhh---HHHHHhcCCCeee-EecccCHHHHHHHhcCCCcEEEc
Q 017943 205 TTFLPALKFAREQGLQITLHCGEIPNKEE---IQSMLDFLPQRIG-HACCFEEEEWRKLKSSKIPVEIC 269 (363)
Q Consensus 205 ~~~~~~~~~A~~~gl~~~~HagE~~~~~~---i~~~l~~g~~rig-Hg~~~~~~~~~~l~~~~i~ve~c 269 (363)
..+..+-+.++++|..+.+.-.+...... +...+..+++-+- =+...++..++.+++++|++..+
T Consensus 16 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~l~~~~iPvv~~ 84 (268)
T cd06273 16 RVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDHSPALLDLLARRGVPYVAT 84 (268)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEE
Confidence 44556677788899888887654432211 2222233444321 01223456788888999998765
Done!