Query 017944
Match_columns 363
No_of_seqs 183 out of 1439
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 04:48:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 1.1E-85 2.4E-90 620.8 33.2 353 2-363 6-375 (375)
2 PTZ00466 actin-like protein; P 100.0 1.3E-84 2.7E-89 614.1 34.1 353 1-363 12-380 (380)
3 PTZ00281 actin; Provisional 100.0 1.2E-83 2.7E-88 608.5 32.3 354 1-363 6-376 (376)
4 KOG0676 Actin and related prot 100.0 1E-84 2.2E-89 594.6 23.4 350 2-363 8-372 (372)
5 PTZ00004 actin-2; Provisional 100.0 1.6E-81 3.4E-86 595.0 32.7 353 2-363 7-378 (378)
6 KOG0679 Actin-related protein 100.0 2.7E-79 5.8E-84 543.2 23.6 354 2-363 12-426 (426)
7 PTZ00280 Actin-related protein 100.0 7.8E-78 1.7E-82 576.7 33.2 352 1-361 4-408 (414)
8 PF00022 Actin: Actin; InterP 100.0 1.7E-76 3.6E-81 566.6 26.7 354 1-363 4-393 (393)
9 KOG0677 Actin-related protein 100.0 9.3E-77 2E-81 501.6 21.4 351 2-361 5-386 (389)
10 smart00268 ACTIN Actin. ACTIN 100.0 3.6E-75 7.9E-80 553.2 32.5 353 2-363 2-373 (373)
11 cd00012 ACTIN Actin; An ubiqui 100.0 4E-72 8.6E-77 531.8 32.3 350 3-361 1-371 (371)
12 COG5277 Actin and related prot 100.0 2.2E-68 4.8E-73 504.9 29.0 352 3-363 8-444 (444)
13 KOG0680 Actin-related protein 100.0 1.6E-66 3.4E-71 451.3 24.8 353 1-363 3-399 (400)
14 KOG0678 Actin-related protein 100.0 6.5E-56 1.4E-60 385.7 12.6 349 3-360 6-407 (415)
15 KOG0681 Actin-related protein 100.0 4.7E-54 1E-58 395.9 21.9 352 2-362 24-639 (645)
16 KOG0797 Actin-related protein 100.0 9.2E-40 2E-44 299.6 20.3 302 54-363 182-615 (618)
17 PRK13930 rod shape-determining 100.0 3.6E-39 7.9E-44 302.1 17.6 302 4-336 11-327 (335)
18 PRK13927 rod shape-determining 100.0 4.6E-38 1E-42 294.4 17.0 300 3-336 7-323 (334)
19 TIGR00904 mreB cell shape dete 100.0 7.9E-37 1.7E-41 285.6 18.5 303 3-336 4-326 (333)
20 PRK13929 rod-share determining 100.0 1.6E-35 3.5E-40 276.3 18.5 300 2-335 5-324 (335)
21 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 5.5E-34 1.2E-38 260.5 20.6 301 2-336 2-320 (326)
22 PRK13928 rod shape-determining 100.0 1.2E-32 2.7E-37 257.5 17.3 302 3-336 5-322 (336)
23 COG1077 MreB Actin-like ATPase 100.0 1.9E-28 4.1E-33 216.1 16.0 305 2-336 7-330 (342)
24 TIGR02529 EutJ ethanolamine ut 99.9 4.5E-21 9.7E-26 170.2 18.4 236 6-333 2-238 (239)
25 PRK15080 ethanolamine utilizat 99.8 1.3E-18 2.7E-23 157.2 20.3 238 4-335 27-267 (267)
26 CHL00094 dnaK heat shock prote 99.7 5.7E-17 1.2E-21 163.1 17.1 296 1-337 1-376 (621)
27 TIGR01991 HscA Fe-S protein as 99.7 8.5E-17 1.8E-21 161.0 16.6 294 3-337 1-360 (599)
28 PRK00290 dnaK molecular chaper 99.7 7.9E-17 1.7E-21 162.5 16.4 296 1-337 1-374 (627)
29 PRK13411 molecular chaperone D 99.7 2.1E-16 4.5E-21 159.6 16.7 296 1-337 1-376 (653)
30 PRK13410 molecular chaperone D 99.7 3.2E-16 6.8E-21 158.0 17.8 296 1-337 1-376 (668)
31 PTZ00186 heat shock 70 kDa pre 99.7 8E-16 1.7E-20 154.5 20.0 291 3-337 29-401 (657)
32 PTZ00400 DnaK-type molecular c 99.7 7.3E-16 1.6E-20 155.7 19.9 212 87-337 174-415 (663)
33 PRK01433 hscA chaperone protei 99.7 4.1E-16 9E-21 155.2 17.6 283 3-337 21-356 (595)
34 PLN03184 chloroplast Hsp70; Pr 99.7 5.1E-16 1.1E-20 157.0 17.7 294 3-337 41-413 (673)
35 PRK05183 hscA chaperone protei 99.7 3.5E-16 7.7E-21 156.9 16.4 290 3-337 21-376 (616)
36 TIGR02350 prok_dnaK chaperone 99.7 5.8E-16 1.2E-20 155.6 16.4 294 3-337 2-372 (595)
37 PTZ00009 heat shock 70 kDa pro 99.7 2.8E-15 6E-20 151.6 19.1 211 88-337 141-381 (653)
38 TIGR01174 ftsA cell division p 99.6 3.1E-13 6.7E-18 128.4 19.5 174 99-300 156-338 (371)
39 PF00012 HSP70: Hsp70 protein; 99.5 7E-14 1.5E-18 141.4 14.0 215 88-336 136-375 (602)
40 PRK11678 putative chaperone; P 99.5 1E-12 2.2E-17 126.7 20.4 88 88-177 150-260 (450)
41 PRK09472 ftsA cell division pr 99.5 2.6E-13 5.6E-18 130.6 12.8 207 100-337 165-388 (420)
42 COG0443 DnaK Molecular chapero 99.4 4.5E-12 9.8E-17 125.8 17.4 291 3-337 7-357 (579)
43 COG0849 ftsA Cell division ATP 99.3 3.8E-12 8.2E-17 120.0 9.1 210 100-337 164-380 (418)
44 PRK13917 plasmid segregation p 99.3 5.1E-11 1.1E-15 111.5 15.1 172 114-336 151-335 (344)
45 COG4820 EutJ Ethanolamine util 99.2 5.1E-12 1.1E-16 104.5 3.5 216 4-300 32-250 (277)
46 TIGR01175 pilM type IV pilus a 99.2 2.5E-09 5.4E-14 100.9 21.9 154 99-300 141-306 (348)
47 PF11104 PilM_2: Type IV pilus 99.2 3.3E-09 7E-14 99.6 18.8 185 64-300 86-298 (340)
48 KOG0100 Molecular chaperones G 99.1 2.9E-09 6.2E-14 97.2 15.2 112 88-200 173-298 (663)
49 TIGR03739 PRTRC_D PRTRC system 99.0 5.1E-09 1.1E-13 97.4 13.6 173 6-183 2-215 (320)
50 COG4972 PilM Tfp pilus assembl 98.8 1.2E-07 2.6E-12 85.0 13.8 147 107-300 154-311 (354)
51 KOG0101 Molecular chaperones H 98.7 5E-07 1.1E-11 88.5 16.8 214 88-337 144-383 (620)
52 PRK10719 eutA reactivating fac 98.5 7.5E-06 1.6E-10 77.8 17.7 161 3-175 8-184 (475)
53 KOG0103 Molecular chaperones H 98.5 9.6E-07 2.1E-11 86.2 11.6 95 86-182 136-246 (727)
54 KOG0104 Molecular chaperones G 98.5 1.3E-06 2.8E-11 85.7 11.8 94 88-182 159-275 (902)
55 KOG0102 Molecular chaperones m 98.5 3.1E-06 6.6E-11 80.5 13.8 192 88-301 161-378 (640)
56 TIGR00241 CoA_E_activ CoA-subs 98.4 2.5E-05 5.4E-10 70.0 16.5 154 136-334 92-248 (248)
57 PF06406 StbA: StbA protein; 98.3 2E-05 4.4E-10 73.2 13.9 176 3-182 2-212 (318)
58 TIGR03286 methan_mark_15 putat 97.8 0.00031 6.8E-09 66.0 12.1 48 276-336 355-402 (404)
59 COG1924 Activator of 2-hydroxy 97.7 0.003 6.6E-08 58.3 16.5 44 280-336 346-389 (396)
60 TIGR03192 benz_CoA_bzdQ benzoy 97.7 0.00091 2E-08 60.5 12.5 50 275-336 238-287 (293)
61 PF06277 EutA: Ethanolamine ut 97.6 0.0016 3.5E-08 62.2 13.5 169 3-187 5-204 (473)
62 PF08841 DDR: Diol dehydratase 96.9 0.0073 1.6E-07 53.6 9.6 93 100-200 94-191 (332)
63 COG0248 GppA Exopolyphosphatas 96.7 0.017 3.6E-07 56.6 10.9 152 2-174 4-166 (492)
64 TIGR03706 exo_poly_only exopol 96.5 0.019 4.1E-07 52.9 9.4 85 88-176 73-164 (300)
65 PRK11031 guanosine pentaphosph 96.4 0.02 4.4E-07 56.6 9.5 78 95-175 85-170 (496)
66 TIGR02261 benz_CoA_red_D benzo 96.2 0.12 2.6E-06 46.2 12.5 50 278-335 213-262 (262)
67 PRK10854 exopolyphosphatase; P 95.7 0.048 1E-06 54.2 8.5 151 3-174 13-174 (513)
68 TIGR02259 benz_CoA_red_A benzo 95.1 0.19 4E-06 47.5 9.7 51 276-335 381-432 (432)
69 PF14450 FtsA: Cell division p 95.0 0.14 3E-06 40.3 7.6 59 138-205 2-71 (120)
70 PRK09557 fructokinase; Reviewe 94.9 1.5 3.2E-05 40.3 15.3 53 106-160 88-147 (301)
71 COG1548 Predicted transcriptio 94.8 0.2 4.4E-06 44.1 8.5 23 134-156 129-151 (330)
72 TIGR00744 ROK_glcA_fam ROK fam 94.4 3.1 6.7E-05 38.5 16.5 53 106-160 89-148 (318)
73 PF01869 BcrAD_BadFG: BadF/Bad 94.4 0.15 3.2E-06 46.2 7.3 65 257-335 206-271 (271)
74 PRK13317 pantothenate kinase; 93.9 0.56 1.2E-05 42.6 10.0 50 277-336 223-273 (277)
75 COG4819 EutA Ethanolamine util 91.6 1.6 3.4E-05 40.1 9.2 191 3-207 7-239 (473)
76 PF02541 Ppx-GppA: Ppx/GppA ph 90.9 0.47 1E-05 43.3 5.6 74 100-176 70-151 (285)
77 PF01968 Hydantoinase_A: Hydan 90.8 0.22 4.9E-06 45.6 3.3 33 128-160 69-102 (290)
78 PF07318 DUF1464: Protein of u 90.4 1.1 2.3E-05 41.7 7.3 29 132-160 151-179 (343)
79 COG1521 Pantothenate kinase ty 89.7 2 4.2E-05 38.3 8.1 15 4-18 3-17 (251)
80 COG2441 Predicted butyrate kin 87.4 0.81 1.8E-05 40.8 4.1 155 135-336 163-331 (374)
81 PRK13324 pantothenate kinase; 86.6 13 0.00028 33.4 11.5 16 3-18 2-17 (258)
82 TIGR03123 one_C_unchar_1 proba 85.5 0.76 1.6E-05 42.5 3.1 31 130-160 123-153 (318)
83 PRK13321 pantothenate kinase; 84.4 6.4 0.00014 35.3 8.6 15 4-18 3-17 (256)
84 KOG1385 Nucleoside phosphatase 83.1 6 0.00013 37.6 7.8 17 134-150 212-228 (453)
85 TIGR00671 baf pantothenate kin 81.4 18 0.00039 32.1 10.1 15 4-18 2-16 (243)
86 PRK13318 pantothenate kinase; 80.5 33 0.00072 30.7 11.7 16 3-18 2-17 (258)
87 PRK13320 pantothenate kinase; 78.4 24 0.00053 31.3 10.0 16 3-18 4-19 (244)
88 KOG1794 N-Acetylglucosamine ki 76.0 63 0.0014 29.5 14.4 91 66-158 47-143 (336)
89 PF03309 Pan_kinase: Type III 75.6 45 0.00097 28.7 10.6 15 4-18 2-16 (206)
90 PF08735 DUF1786: Putative pyr 74.1 25 0.00055 31.3 8.6 48 110-158 136-190 (254)
91 PRK13326 pantothenate kinase; 72.3 53 0.0012 29.6 10.6 15 4-18 9-23 (262)
92 PF03702 UPF0075: Uncharacteri 67.6 4 8.8E-05 38.6 2.4 24 277-300 285-308 (364)
93 PRK05082 N-acetylmannosamine k 64.7 46 0.00099 30.2 8.8 53 106-160 88-146 (291)
94 PRK00292 glk glucokinase; Prov 62.8 72 0.0016 29.4 9.9 47 108-155 84-147 (316)
95 PRK13329 pantothenate kinase; 60.5 1.1E+02 0.0024 27.3 10.1 18 1-18 1-18 (249)
96 COG0145 HyuA N-methylhydantoin 60.0 8 0.00017 39.7 3.1 33 128-160 269-303 (674)
97 PRK13310 N-acetyl-D-glucosamin 59.0 11 0.00025 34.4 3.8 53 106-160 88-147 (303)
98 KOG1386 Nucleoside phosphatase 55.6 1.1E+02 0.0023 30.1 9.5 88 66-154 65-181 (501)
99 smart00842 FtsA Cell division 55.2 34 0.00074 28.8 5.8 56 4-78 2-58 (187)
100 smart00732 YqgFc Likely ribonu 54.4 13 0.00028 27.4 2.7 18 1-18 1-18 (99)
101 KOG2708 Predicted metalloprote 53.7 81 0.0018 27.7 7.6 50 132-182 121-170 (336)
102 COG4012 Uncharacterized protei 53.7 82 0.0018 28.3 7.8 40 119-158 207-250 (342)
103 PRK05082 N-acetylmannosamine k 53.6 19 0.00042 32.7 4.3 66 256-335 220-286 (291)
104 cd08627 PI-PLCc_gamma1 Catalyt 52.3 25 0.00054 30.8 4.4 33 83-116 85-117 (229)
105 cd08626 PI-PLCc_beta4 Catalyti 50.9 26 0.00057 31.3 4.4 44 66-116 76-119 (257)
106 PRK09585 anmK anhydro-N-acetyl 50.8 14 0.00029 35.1 2.8 23 278-300 288-310 (365)
107 cd08596 PI-PLCc_epsilon Cataly 49.7 28 0.0006 31.1 4.4 43 66-115 74-116 (254)
108 cd08630 PI-PLCc_delta3 Catalyt 49.1 29 0.00063 31.1 4.4 44 66-116 74-117 (258)
109 cd08594 PI-PLCc_eta Catalytic 48.6 30 0.00065 30.3 4.4 44 66-116 74-117 (227)
110 cd08629 PI-PLCc_delta1 Catalyt 48.2 30 0.00064 31.0 4.3 43 67-116 75-117 (258)
111 cd08593 PI-PLCc_delta Catalyti 47.6 30 0.00065 31.0 4.3 44 66-116 74-117 (257)
112 cd08598 PI-PLC1c_yeast Catalyt 47.0 32 0.00069 30.3 4.3 44 66-116 74-117 (231)
113 cd08631 PI-PLCc_delta4 Catalyt 46.9 31 0.00067 30.9 4.3 31 86-116 87-117 (258)
114 cd08632 PI-PLCc_eta1 Catalytic 46.7 34 0.00073 30.5 4.4 44 66-116 74-117 (253)
115 cd08558 PI-PLCc_eukaryota Cata 46.7 34 0.00073 30.0 4.4 44 66-116 74-117 (226)
116 cd08592 PI-PLCc_gamma Catalyti 46.6 33 0.00071 30.1 4.3 44 66-116 74-117 (229)
117 cd08595 PI-PLCc_zeta Catalytic 46.5 32 0.0007 30.7 4.3 44 66-116 74-117 (257)
118 cd08633 PI-PLCc_eta2 Catalytic 45.9 35 0.00076 30.4 4.4 44 66-116 74-117 (254)
119 PF02782 FGGY_C: FGGY family o 45.8 11 0.00025 31.8 1.4 47 277-337 150-196 (198)
120 cd08591 PI-PLCc_beta Catalytic 45.0 35 0.00077 30.5 4.3 44 66-116 76-119 (257)
121 cd08597 PI-PLCc_PRIP_metazoa C 43.5 38 0.00082 30.4 4.3 44 66-116 74-117 (260)
122 COG0278 Glutaredoxin-related p 43.4 45 0.00098 25.1 3.9 58 280-347 18-79 (105)
123 cd08628 PI-PLCc_gamma2 Catalyt 42.6 41 0.00089 30.1 4.4 44 66-116 74-117 (254)
124 TIGR02707 butyr_kinase butyrat 42.1 3E+02 0.0066 25.9 12.5 25 136-161 175-199 (351)
125 PRK03011 butyrate kinase; Prov 40.9 20 0.00043 33.9 2.3 27 134-161 175-201 (358)
126 COG2377 Predicted molecular ch 39.5 1.3E+02 0.0028 28.5 7.2 156 123-300 151-314 (371)
127 PRK09698 D-allose kinase; Prov 39.3 48 0.001 30.2 4.6 53 106-160 96-154 (302)
128 TIGR03367 queuosine_QueD queuo 39.3 41 0.0009 24.8 3.4 49 58-114 42-90 (92)
129 cd08624 PI-PLCc_beta2 Catalyti 38.9 49 0.0011 29.7 4.2 44 66-116 76-120 (261)
130 COG4012 Uncharacterized protei 38.5 34 0.00075 30.6 3.2 33 1-33 1-35 (342)
131 cd08623 PI-PLCc_beta1 Catalyti 37.1 56 0.0012 29.3 4.3 44 66-116 76-120 (258)
132 PTZ00340 O-sialoglycoprotein e 36.4 20 0.00043 33.7 1.5 56 277-336 264-319 (345)
133 PRK14878 UGMP family protein; 36.2 27 0.00059 32.5 2.4 24 277-300 242-265 (323)
134 PF13941 MutL: MutL protein 35.8 47 0.001 32.5 4.0 66 97-162 194-275 (457)
135 TIGR00555 panK_eukar pantothen 34.7 36 0.00078 31.0 2.8 47 255-301 208-256 (279)
136 COG0533 QRI7 Metal-dependent p 34.2 24 0.00051 32.9 1.6 61 272-336 257-317 (342)
137 cd08625 PI-PLCc_beta3 Catalyti 34.0 59 0.0013 29.2 4.0 44 66-116 76-120 (258)
138 PF09693 Phage_XkdX: Phage unc 33.4 22 0.00048 21.8 0.9 10 343-352 25-34 (40)
139 PRK00976 hypothetical protein; 32.8 52 0.0011 30.6 3.6 34 126-160 140-173 (326)
140 TIGR01319 glmL_fam conserved h 32.5 29 0.00063 33.8 1.9 71 88-158 175-272 (463)
141 cd08599 PI-PLCc_plant Catalyti 32.0 81 0.0018 27.7 4.5 30 86-115 87-116 (228)
142 smart00732 YqgFc Likely ribonu 29.8 1.5E+02 0.0032 21.5 5.2 45 137-181 3-48 (99)
143 TIGR01669 phage_XkdX phage unc 29.6 25 0.00053 22.3 0.6 10 343-352 30-39 (45)
144 PRK13328 pantothenate kinase; 29.1 4.2E+02 0.0091 23.7 10.0 17 2-18 2-18 (255)
145 PRK09417 mogA molybdenum cofac 28.3 80 0.0017 27.0 3.8 37 255-300 52-107 (193)
146 KOG2960 Protein involved in th 27.7 54 0.0012 28.5 2.6 81 271-360 70-154 (328)
147 PLN02952 phosphoinositide phos 26.3 98 0.0021 31.5 4.5 44 66-116 196-239 (599)
148 PLN02230 phosphoinositide phos 25.4 95 0.0021 31.5 4.2 43 67-116 188-230 (598)
149 PLN02223 phosphoinositide phos 25.3 1.1E+02 0.0024 30.5 4.6 45 66-116 179-223 (537)
150 PF00370 FGGY_N: FGGY family o 24.9 53 0.0012 28.9 2.2 15 4-18 3-17 (245)
151 PRK13333 pantothenate kinase; 24.8 78 0.0017 27.4 3.1 30 124-156 75-104 (206)
152 PLN02228 Phosphoinositide phos 24.7 1.1E+02 0.0023 31.0 4.4 43 67-116 180-222 (567)
153 PLN02222 phosphoinositide phos 24.7 95 0.0021 31.4 4.1 33 83-116 187-219 (581)
154 COG4962 CpaF Flp pilus assembl 24.6 4.7E+02 0.01 24.7 8.2 26 278-306 174-200 (355)
155 PF13941 MutL: MutL protein 24.5 61 0.0013 31.7 2.7 24 3-27 2-27 (457)
156 PRK00976 hypothetical protein; 23.4 1.1E+02 0.0023 28.6 3.8 57 257-336 251-310 (326)
157 PRK09472 ftsA cell division pr 23.3 2E+02 0.0043 27.8 6.0 24 55-78 44-67 (420)
158 PTZ00294 glycerol kinase-like 22.9 72 0.0016 31.7 2.9 47 277-337 407-453 (504)
159 KOG2707 Predicted metalloprote 22.6 74 0.0016 29.8 2.6 70 261-337 292-362 (405)
160 TIGR00177 molyb_syn molybdenum 21.0 88 0.0019 25.1 2.6 27 253-288 52-78 (144)
161 TIGR00329 gcp_kae1 metallohydr 20.6 82 0.0018 29.0 2.6 88 66-155 50-145 (305)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=1.1e-85 Score=620.82 Aligned_cols=353 Identities=33% Similarity=0.553 Sum_probs=324.1
Q ss_pred ccEEEEcCCCcEEEeecCCCCCCceecccceeeccC----------CCccccCcccccC-Cce-eccccCCeecCHHHHH
Q 017944 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE----------DGSSSVDNSTLVE-DVT-VDPVVRGFIRDWDAME 69 (363)
Q Consensus 2 ~~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~~----------~~~~g~~~~~~~~-~~~-~~p~~~g~i~~~~~~~ 69 (363)
++||||+||+++|+||| ||+.|++++||++++... +.++| +++...+ .++ .+|+++|.|.|||.+|
T Consensus 6 ~~vViD~Gs~~~k~G~a-ge~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG-~~~~~~~~~~~l~~Pi~~G~I~dwd~~e 83 (375)
T PTZ00452 6 PAVVIDNGSGYCKIGIA-GDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVG-EEAQAKRGVLAIKEPIQNGIINSWDDIE 83 (375)
T ss_pred CEEEEECCCCeEEEeeC-CCCCcCEEecceeEEECCccccccccccceEEC-hhhhccccCcEEcccCcCCEEcCHHHHH
Confidence 47999999999999999 999999999999976421 34678 7764444 445 4999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCCceEEEEecCCCceEE
Q 017944 70 DLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDI 149 (363)
Q Consensus 70 ~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v 149 (363)
.+|+|+|.+.|.+++ +++|+++++++++++..|++++|++||.|++|++++.++++|++|++|++||+|||+|++.|+|
T Consensus 84 ~iw~~~f~~~l~v~p-~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v 162 (375)
T PTZ00452 84 IIWHHAFYNELCMSP-EDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHC 162 (375)
T ss_pred HHHHHHHHhhcCCCc-ccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceE
Confidence 999999998899999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCcc--ccHHHHHHHHHHcccccCC-HHHHHHhcc-cCCCceeEC
Q 017944 150 APVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVN--LSLYDVEKLKEQFSCCAED-ELAYEKTQK-SCEIEQHTL 225 (363)
Q Consensus 150 ~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~--~~~~~~~~iK~~~~~v~~~-~~~~~~~~~-~~~~~~~~l 225 (363)
+||+||+++.+++.++++||+++|++|.++|.++++++. .+.++++++||++||++.| .++.+.... +...+.|+|
T Consensus 163 ~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~L 242 (375)
T PTZ00452 163 VPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKL 242 (375)
T ss_pred EEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEEC
Confidence 999999999999999999999999999999988887763 3577899999999999988 344432222 223468999
Q ss_pred CCCcEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh-ccCC
Q 017944 226 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCS 304 (363)
Q Consensus 226 p~~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL-~~~~ 304 (363)
|||+.+.++.||+.++|+||+|+++|.+..||+++|.++|++||+|+|+.|++||||+||+|++|||.+||++|| ++.|
T Consensus 243 PDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p 322 (375)
T PTZ00452 243 PDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVP 322 (375)
T ss_pred CCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred CCcceEEeCCCCCCCcCCcceeeeechhhhhccCCCCceeeehHHHhhcCccchhcccC
Q 017944 305 SAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 363 (363)
Q Consensus 305 ~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~rk~~ 363 (363)
.+.++++.++++ |.+++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus 323 ~~~~v~v~~~~~------r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 323 SQLKIQVAAPPD------RRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred CCceeEEecCCC------cceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence 888999999888 99999999999999999999999999999999999999997
No 2
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=1.3e-84 Score=614.09 Aligned_cols=353 Identities=32% Similarity=0.530 Sum_probs=322.7
Q ss_pred CccEEEEcCCCcEEEeecCCCCCCceecccceeecc----------CCCccccCcccccC-Cce-eccccCCeecCHHHH
Q 017944 1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL----------EDGSSSVDNSTLVE-DVT-VDPVVRGFIRDWDAM 68 (363)
Q Consensus 1 m~~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~----------~~~~~g~~~~~~~~-~~~-~~p~~~g~i~~~~~~ 68 (363)
+++||||+||+++|+||+ ||+.|++++||++++.. ++.++| +++...+ .++ .+|+++|.|.|||.+
T Consensus 12 ~~~iViD~GS~~~K~G~a-g~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG-~~~~~~~~~~~l~~Pi~~G~v~dwd~~ 89 (380)
T PTZ00466 12 NQPIIIDNGTGYIKAGFA-GEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVG-NKAEEYRGLLKVTYPINHGIIENWNDM 89 (380)
T ss_pred CCeEEEECCCCcEEEeeC-CCCCCCEeccceeeeecCccccccCCCCCeEEC-chhhhhCcCceeCccccCCeECCHHHH
Confidence 467999999999999999 99999999999997632 234678 7765444 344 489999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCCceEEEEecCCCceE
Q 017944 69 EDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKID 148 (363)
Q Consensus 69 ~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~ 148 (363)
|.+|+|+| +.|++++ .++|+++++++++++..|++++|++||.|++|++++.++++||+|++|++||+|||+|++.|+
T Consensus 90 e~iw~~~f-~~l~v~~-~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~ 167 (380)
T PTZ00466 90 ENIWIHVY-NSMKINS-EEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCH 167 (380)
T ss_pred HHHHHHHH-hhcccCC-ccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceE
Confidence 99999998 6799998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCc--cccHHHHHHHHHHcccccCC-HHHHHHhcccCCCceeEC
Q 017944 149 IAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV--NLSLYDVEKLKEQFSCCAED-ELAYEKTQKSCEIEQHTL 225 (363)
Q Consensus 149 v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~--~~~~~~~~~iK~~~~~v~~~-~~~~~~~~~~~~~~~~~l 225 (363)
|+||+||+++.+++.++++||++++++|+++|.++++.+ ..+.++++++||++||++.| .++.+..........|+|
T Consensus 168 v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~L 247 (380)
T PTZ00466 168 CVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYIL 247 (380)
T ss_pred EEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhccccccceeEEC
Confidence 999999999999999999999999999999998887654 34578999999999999988 333332222223468999
Q ss_pred CCCcEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh-ccCC
Q 017944 226 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCS 304 (363)
Q Consensus 226 p~~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL-~~~~ 304 (363)
|||..+.++.||+.++|+||+|+++|.+..||+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++|| ++.|
T Consensus 248 Pdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p 327 (380)
T PTZ00466 248 PDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAP 327 (380)
T ss_pred CCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCcceEEeCCCCCCCcCCcceeeeechhhhhccCCCCceeeehHHHhhcCccchhcccC
Q 017944 305 SAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 363 (363)
Q Consensus 305 ~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~rk~~ 363 (363)
.++++++..+++ |.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus 328 ~~~~v~v~~~~~------r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 328 KDITIRISAPPE------RKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred CCceEEEecCCC------CceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence 888999999888 99999999999999999999999999999999999999997
No 3
>PTZ00281 actin; Provisional
Probab=100.00 E-value=1.2e-83 Score=608.51 Aligned_cols=354 Identities=41% Similarity=0.642 Sum_probs=324.2
Q ss_pred CccEEEEcCCCcEEEeecCCCCCCceecccceeecc----------CCCccccCcccccC-Cce-eccccCCeecCHHHH
Q 017944 1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL----------EDGSSSVDNSTLVE-DVT-VDPVVRGFIRDWDAM 68 (363)
Q Consensus 1 m~~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~----------~~~~~g~~~~~~~~-~~~-~~p~~~g~i~~~~~~ 68 (363)
+++||||+||+++|+||| ||+.|++++||.+++.. .+.++| +++...+ .+. .+|+++|.|.|||.+
T Consensus 6 ~~~vViD~Gs~~~k~G~a-ge~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~l~~Pi~~G~i~dwd~~ 83 (376)
T PTZ00281 6 VQALVIDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVG-DEAQSKRGILTLKYPIEHGIVTNWDDM 83 (376)
T ss_pred CCeEEEECCCCeEEEeeC-CCCCCCeeccccceeecCcccccCcccCCeEEC-chhhccccCcEEeccCcCCEEcCHHHH
Confidence 468999999999999999 99999999999997631 134678 7664433 444 499999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCCceEEEEecCCCceE
Q 017944 69 EDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKID 148 (363)
Q Consensus 69 ~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~ 148 (363)
+.+|+|+|.+.|.+++ +++|+++++|+++++..|++++|++||.|++|++++.+++++++|+.|++||+|||+|++.|+
T Consensus 84 e~l~~~~f~~~l~v~p-~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~ 162 (376)
T PTZ00281 84 EKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSH 162 (376)
T ss_pred HHHHHHHHHhhccCCC-ccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEE
Confidence 9999999988899999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCc--cccHHHHHHHHHHcccccCC-HHHHHHhcc-cCCCceeE
Q 017944 149 IAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV--NLSLYDVEKLKEQFSCCAED-ELAYEKTQK-SCEIEQHT 224 (363)
Q Consensus 149 v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~--~~~~~~~~~iK~~~~~v~~~-~~~~~~~~~-~~~~~~~~ 224 (363)
|+||+||+++.+++.++++||++++++|+++|.++++++ ..+.+.++++|+++|||+.+ +.+.+.... ....+.|.
T Consensus 163 v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~ 242 (376)
T PTZ00281 163 TVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYE 242 (376)
T ss_pred EEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEE
Confidence 999999999999999999999999999999999888766 34578999999999999987 444443222 12236899
Q ss_pred CCCCcEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh-ccC
Q 017944 225 LPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLC 303 (363)
Q Consensus 225 lp~~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL-~~~ 303 (363)
||||+.+.++.||+.++|+||+|++++.+..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++|| ++.
T Consensus 243 LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~ 322 (376)
T PTZ00281 243 LPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALA 322 (376)
T ss_pred CCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred CCCcceEEeCCCCCCCcCCcceeeeechhhhhccCCCCceeeehHHHhhcCccchhcccC
Q 017944 304 SSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 363 (363)
Q Consensus 304 ~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~rk~~ 363 (363)
|...++++..+++ |.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus 323 p~~~~v~v~~~~~------r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 323 PSTMKIKIIAPPE------RKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred CCCcceEEecCCC------CceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence 9888999999888 99999999999999999999999999999999999999997
No 4
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1e-84 Score=594.64 Aligned_cols=350 Identities=43% Similarity=0.678 Sum_probs=323.5
Q ss_pred ccEEEEcCCCcEEEeecCCCCCCceecccceeec----------cCCCccccCcccccCCceeccccCCeecCHHHHHHH
Q 017944 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV----------LEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDL 71 (363)
Q Consensus 2 ~~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~----------~~~~~~g~~~~~~~~~~~~~p~~~g~i~~~~~~~~i 71 (363)
++||||+||..+|+||+ ||+.|++++||.+++. .++.++| +++..++.+ +||+++|.|.|||+++.|
T Consensus 8 ~~vViDnGsg~~KaGfa-g~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg-~~a~~~~~l-~~Pie~Giv~~wd~me~i 84 (372)
T KOG0676|consen 8 QAVVIDNGSGFVKAGFA-GDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVG-DEAESKRTL-KYPIERGIVTDWDDMEKI 84 (372)
T ss_pred ceEEEECCCceeecccC-CCCCCceecceeccccccccccccccccccccc-hhhhccccc-cCccccccccchHHHHHH
Confidence 58999999999999999 9999999999999762 2346778 887666622 699999999999999999
Q ss_pred HHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCCceEEEEecCCCceEEEE
Q 017944 72 LHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAP 151 (363)
Q Consensus 72 ~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~p 151 (363)
|+|+|.+.|.++| .++|+++++++++++..||+++|++||.|++|++++..++++ |++|++||+|||+|++.|+++|
T Consensus 85 w~~if~~~L~~~P-ee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~vP 161 (372)
T KOG0676|consen 85 WHHLFYSELLVAP-EEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTHVVP 161 (372)
T ss_pred HHHHHHHhhccCc-ccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCceeeee
Confidence 9999999999999 899999999999999999999999999999999999776666 9999999999999999999999
Q ss_pred eecCeecccceEEeeccHHHHHHHHHHHHhccCCCc--cccHHHHHHHHHHcccccCC-HHHHHHh-cccCCCceeECCC
Q 017944 152 VIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV--NLSLYDVEKLKEQFSCCAED-ELAYEKT-QKSCEIEQHTLPD 227 (363)
Q Consensus 152 v~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~--~~~~~~~~~iK~~~~~v~~~-~~~~~~~-~~~~~~~~~~lp~ 227 (363)
|+||+++++++.++++||++++++++..|.++++++ ....++++++||++||++.| +++.... ..+.....|.|||
T Consensus 162 I~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~lPD 241 (372)
T KOG0676|consen 162 IYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYELPD 241 (372)
T ss_pred cccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhcccccccccccccCCC
Confidence 999999999999999999999999999998888777 46788999999999999998 4444431 1223346799999
Q ss_pred CcEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh-ccCCCC
Q 017944 228 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSA 306 (363)
Q Consensus 228 ~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL-~~~~~~ 306 (363)
|+.+.++++|+.++|+||+|+++|.+..+|++++.++|.+||.|.|++|++||||+||++++|||.+||++|| .+.|+.
T Consensus 242 g~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~ 321 (372)
T KOG0676|consen 242 GQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPST 321 (372)
T ss_pred CCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred cceEEeCCCCCCCcCCcceeeeechhhhhccCCCCceeeehHHHhhcCccchhcccC
Q 017944 307 IRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 363 (363)
Q Consensus 307 ~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~rk~~ 363 (363)
.+++++++|+ |.+++|+||||+|++++|+++||||+||+|+|+.+++||||
T Consensus 322 ~~ikv~~pp~------r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 322 IKIKVIAPPE------RKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred cceEEecCcc------cccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence 9999999999 88999999999999999999999999999999999999998
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=1.6e-81 Score=595.04 Aligned_cols=353 Identities=40% Similarity=0.631 Sum_probs=322.6
Q ss_pred ccEEEEcCCCcEEEeecCCCCCCceecccceeeccC----------CCccccCcccccC-Cce-eccccCCeecCHHHHH
Q 017944 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE----------DGSSSVDNSTLVE-DVT-VDPVVRGFIRDWDAME 69 (363)
Q Consensus 2 ~~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~~----------~~~~g~~~~~~~~-~~~-~~p~~~g~i~~~~~~~ 69 (363)
++||||+||+++|+||+ |++.|++++||++++... ..++| +++...+ .+. ++|+++|.|.|||.++
T Consensus 7 ~~vViD~Gs~~~k~G~a-g~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~l~~Pi~~G~i~d~d~~e 84 (378)
T PTZ00004 7 NAAVVDNGSGMVKAGFA-GDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVG-DEAQDKRGILTLKYPIEHGIVTNWDDME 84 (378)
T ss_pred CeEEEECCCCeEEEeeC-CCCCCCEEccceeEEecccccccCcCCCceEEC-chhhcccccceEcccCcCCEEcCHHHHH
Confidence 57999999999999999 999999999999976321 34678 7664443 344 4999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCCceEEEEecCCCceEE
Q 017944 70 DLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDI 149 (363)
Q Consensus 70 ~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v 149 (363)
.+|+|+|.++|++++ .++|+++++|+++++..|++++|++||.|++|++++.+++++|+|++|++||+|||+|++.|+|
T Consensus 85 ~i~~~~~~~~l~v~~-~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v 163 (378)
T PTZ00004 85 KIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 163 (378)
T ss_pred HHHHHHHHhhcccCC-ccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEEE
Confidence 999999988899999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCc--cccHHHHHHHHHHcccccCC-HHHHHHhcccCC--CceeE
Q 017944 150 APVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV--NLSLYDVEKLKEQFSCCAED-ELAYEKTQKSCE--IEQHT 224 (363)
Q Consensus 150 ~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~--~~~~~~~~~iK~~~~~v~~~-~~~~~~~~~~~~--~~~~~ 224 (363)
+||+||+++.+++.++++||++++++|+++|.++++.+ ..+.++++++|+++||++.| .++.+....+.. ...|.
T Consensus 164 ~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~ 243 (378)
T PTZ00004 164 VPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYE 243 (378)
T ss_pred EEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEE
Confidence 99999999999999999999999999999999888765 33577899999999999988 444433222212 46899
Q ss_pred CCCCcEEEEeceeccccccccCCCCCCcc-cccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh-cc
Q 017944 225 LPDGQVIRIGKERYTVGEALFQPSILGLE-AHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GL 302 (363)
Q Consensus 225 lp~~~~i~i~~~r~~~~E~lF~p~~~~~~-~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL-~~ 302 (363)
||||+.+.++.+|+.++|+||+|++++.+ ..||+++|.++|.+||.|+|+.|++||||+||+|++|||.+||++|| ++
T Consensus 244 lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~ 323 (378)
T PTZ00004 244 LPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTL 323 (378)
T ss_pred CCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHh
Confidence 99999999999999999999999999888 89999999999999999999999999999999999999999999999 88
Q ss_pred CCCCcceEEeCCCCCCCcCCcceeeeechhhhhccCCCCceeeehHHHhhcCccchhcccC
Q 017944 303 CSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 363 (363)
Q Consensus 303 ~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~rk~~ 363 (363)
.|..+++++...++ |.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus 324 ~p~~~~~~v~~~~~------~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 324 APSTMKIKVVAPPE------RKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred CCCCccEEEecCCC------CceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence 99888999999888 99999999999999999999999999999999999999997
No 6
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=2.7e-79 Score=543.17 Aligned_cols=354 Identities=28% Similarity=0.465 Sum_probs=310.3
Q ss_pred ccEEEEcCCCcEEEeecCCCCCCceecccceeec---------cCCCccccCcc-cccC-Ccee-ccccCCeecCHHHHH
Q 017944 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV---------LEDGSSSVDNS-TLVE-DVTV-DPVVRGFIRDWDAME 69 (363)
Q Consensus 2 ~~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~---------~~~~~~g~~~~-~~~~-~~~~-~p~~~g~i~~~~~~~ 69 (363)
++||||+||+++|+||| |++.|++++||+++.. .+..+++ .++ ..++ +.++ .|+++|.+.|||.++
T Consensus 12 ~alViDpGS~~traGya-ged~Pk~ilPS~~G~~tk~~~d~~~~~~~y~~-~~ai~~pr~gmEv~~~i~nGlv~dWD~~~ 89 (426)
T KOG0679|consen 12 SALVIDPGSHTTRAGYA-GEDSPKAILPSVYGKVTKTDGDAEDKKGYYVD-ENAIHVPRPGMEVKTPIKNGLVEDWDLFE 89 (426)
T ss_pred ceEEEeCCCceEecccc-CCCCccccccceeeeeecccCccccccceEee-chhccCCCCCCeeccchhcCCcccHHHHH
Confidence 58999999999999999 9999999999999841 1123666 554 3333 6675 899999999999999
Q ss_pred HHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCCceEEEEecCCCceEE
Q 017944 70 DLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDI 149 (363)
Q Consensus 70 ~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v 149 (363)
.+|+|.|.++|+++| .++|++++||++++++.|++++|++||++++|+++++.+++|+|||+|+.||||||||+..|+|
T Consensus 90 ~~w~~~~~~~Lk~~p-~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~~sv 168 (426)
T KOG0679|consen 90 MQWRYAYKNQLKVNP-EEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATHTSV 168 (426)
T ss_pred HHHHHHHhhhhhcCc-cccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCCcee
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCcc-----------------------------------ccHHHH
Q 017944 150 APVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVN-----------------------------------LSLYDV 194 (363)
Q Consensus 150 ~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~-----------------------------------~~~~~~ 194 (363)
+||+||+++.+++.+.++||+.|+..++++|...+.++. ..+.++
T Consensus 169 sPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~v~ 248 (426)
T KOG0679|consen 169 SPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQRVY 248 (426)
T ss_pred eeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987765430 012366
Q ss_pred HHHHHHcccccCCHHHHHHhcccCCCceeECCCCcEEEEeceeccccccccCCCCCC------------cccccHHHHHH
Q 017944 195 EKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILG------------LEAHGIVEQLV 262 (363)
Q Consensus 195 ~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~r~~~~E~lF~p~~~~------------~~~~~l~~~I~ 262 (363)
++.|+.++.++.++-+-+. ..+...+.|++|||++..++.+|++++|.||+|++.. ....|+++++.
T Consensus 249 ~e~ke~v~qv~dtp~de~~-~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~~lv~ 327 (426)
T KOG0679|consen 249 QEFKESVLQVSDTPFDEEV-AAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLPHLVY 327 (426)
T ss_pred HHHHHHHHhccCCCCcccc-cccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccCchHHHH
Confidence 6777777777654222111 1224568999999999999999999999999999653 23469999999
Q ss_pred HHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh-ccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhccCCCC
Q 017944 263 HTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQ 341 (363)
Q Consensus 263 ~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL-~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l~~~~ 341 (363)
++|..||.|+|..|+.|||+|||+|+|+||.+||++|| .+.|.+ ++++++....+ +|++++|+||||||+|++|+
T Consensus 328 sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~---eR~~~~WlGGSILASLgtFq 403 (426)
T KOG0679|consen 328 SSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTV---ERRFQSWLGGSILASLGTFQ 403 (426)
T ss_pred hhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCcee---eehhhhhhhhHHHhccccHH
Confidence 99999999999999999999999999999999999999 788877 99999876533 49999999999999999999
Q ss_pred ceeeehHHHhhcCc-cchhcccC
Q 017944 342 NQHITKADYDESGP-SVVHRKCF 363 (363)
Q Consensus 342 ~~~itk~ey~e~G~-~~~~rk~~ 363 (363)
++||||+||||.|. +.++|||.
T Consensus 404 q~WiSKqEYEE~G~d~~ve~rc~ 426 (426)
T KOG0679|consen 404 QLWISKQEYEEVGKDQLVERRCP 426 (426)
T ss_pred HHhhhHHHHHHhhhHHHHhhcCC
Confidence 99999999999998 99999994
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=7.8e-78 Score=576.69 Aligned_cols=352 Identities=29% Similarity=0.509 Sum_probs=314.2
Q ss_pred CccEEEEcCCCcEEEeecCCCCCCceecccceeeccC-------------CCccccCcccccC-Cce-eccccCCeecCH
Q 017944 1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE-------------DGSSSVDNSTLVE-DVT-VDPVVRGFIRDW 65 (363)
Q Consensus 1 m~~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~~-------------~~~~g~~~~~~~~-~~~-~~p~~~g~i~~~ 65 (363)
+++||||+||+++|+||+ |++.|++++||++++... +.++| +++.... .+. ++|+++|.|.||
T Consensus 4 ~~~iViD~GS~~~k~G~a-g~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG-~ea~~~~~~~~l~~Pi~~G~I~dw 81 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYA-GNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIG-DEALAASKSYTLTYPMKHGIVEDW 81 (414)
T ss_pred CCeEEEECCCCceEeeeC-CCCCCCEEecceeEEeccccccccccccccCCEEEc-chhhhCcCCcEEecCccCCEeCCH
Confidence 368999999999999999 999999999999976311 34678 7764444 344 499999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccC----------CCc
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAV----------GRI 135 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~----------g~~ 135 (363)
|.++.+|+|+|.+.|++++ .++|+++++|++++...|++++|++||.|++|++++.++++||+||+ |++
T Consensus 82 d~~e~l~~~~~~~~L~~~p-~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~ 160 (414)
T PTZ00280 82 DLMEKFWEQCIFKYLRCEP-EEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTL 160 (414)
T ss_pred HHHHHHHHHHHHHhhccCC-CCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCce
Confidence 9999999999988899999 99999999999999999999999999999999999999999999999 999
Q ss_pred eEEEEecCCCceEEEEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCcc--ccHHHHHHHHHHcccccCC-HHHHH
Q 017944 136 SGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVN--LSLYDVEKLKEQFSCCAED-ELAYE 212 (363)
Q Consensus 136 tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~--~~~~~~~~iK~~~~~v~~~-~~~~~ 212 (363)
+|+|||+|++.|+|+||+||+++.+++.++++||++++++|.++|.++++++. ...++++++||++||++.| .++.+
T Consensus 161 tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~ 240 (414)
T PTZ00280 161 TGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFE 240 (414)
T ss_pred eEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHH
Confidence 99999999999999999999999999999999999999999999998887663 3578999999999999988 44544
Q ss_pred Hhccc--CCCceeECCC---Cc--EEEEeceeccccccccCCCCCCcc-cccHHHHHHHHHHcCChhHHHHhhcCeEEcc
Q 017944 213 KTQKS--CEIEQHTLPD---GQ--VIRIGKERYTVGEALFQPSILGLE-AHGIVEQLVHTISTVSSENHRQLLENTVLCG 284 (363)
Q Consensus 213 ~~~~~--~~~~~~~lp~---~~--~i~i~~~r~~~~E~lF~p~~~~~~-~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~G 284 (363)
....+ .....|.+|| |. .+.++.+|+.++|+||+|++++.+ ..+|+++|.++|++||+|.|++|++||||+|
T Consensus 241 ~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~G 320 (414)
T PTZ00280 241 KYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSG 320 (414)
T ss_pred HhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeC
Confidence 33221 1235688887 33 789999999999999999987655 4599999999999999999999999999999
Q ss_pred CcccccchHHHHHhhh-ccC----------------CCCcceEEeCCCCCCCcCCcceeeeechhhhhccCCCCceeeeh
Q 017944 285 GTTSMTGFEDRFQKEA-GLC----------------SSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITK 347 (363)
Q Consensus 285 G~s~l~G~~~rL~~eL-~~~----------------~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l~~~~~~~itk 347 (363)
|+|++|||.+||++|| +++ |.++++++..+++ |.+++|+||||+|++++|+++||||
T Consensus 321 G~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~------~~~~~W~GgSilas~~~f~~~~itk 394 (414)
T PTZ00280 321 GSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPR------QRYAVWYGGSMLASSPEFEKVCHTK 394 (414)
T ss_pred CcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCc------cceeEEEChhhcccCcchhhheEEH
Confidence 9999999999999999 775 3466888998887 8999999999999999999999999
Q ss_pred HHHhhcCccchhcc
Q 017944 348 ADYDESGPSVVHRK 361 (363)
Q Consensus 348 ~ey~e~G~~~~~rk 361 (363)
+||+|+|+++++||
T Consensus 395 ~eY~E~G~~i~~~~ 408 (414)
T PTZ00280 395 AEYDEYGPSICRYN 408 (414)
T ss_pred HHHhccChHheeec
Confidence 99999999999987
No 8
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=1.7e-76 Score=566.58 Aligned_cols=354 Identities=35% Similarity=0.623 Sum_probs=307.2
Q ss_pred CccEEEEcCCCcEEEeecCCCCCCceecccceeeccC-----CCccccCcccc-cCCce-eccccCCeecCHHHHHHHHH
Q 017944 1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE-----DGSSSVDNSTL-VEDVT-VDPVVRGFIRDWDAMEDLLH 73 (363)
Q Consensus 1 m~~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~~-----~~~~g~~~~~~-~~~~~-~~p~~~g~i~~~~~~~~i~~ 73 (363)
.++||||+||+++|+||+ ||+.|+.++||.+++..+ +.++| ++... ..... .+|+++|.+.||+.++.+|+
T Consensus 4 ~~~vViD~Gs~~~k~G~a-ge~~P~~v~ps~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~p~~~g~i~~~~~~e~i~~ 81 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFA-GEDLPRVVIPSVVGRPRDKNSSNDYYVG-DEALSPRSNLELRSPIENGVIVDWDALEEIWD 81 (393)
T ss_dssp SSEEEEEECSSEEEEEET-TSSS-SEEEESEEEEESSSSSSSSCEET-HHHHHTGTGEEEEESEETTEESSHHHHHHHHH
T ss_pred CCEEEEECCCceEEEEEC-CCCCCCCcCCCccccccccccceeEEee-cccccchhheeeeeeccccccccccccccccc
Confidence 478999999999999999 999999999999987432 35677 55322 22344 59999999999999999999
Q ss_pred HHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCCceEEEEecCCCceEEEEee
Q 017944 74 HVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVI 153 (363)
Q Consensus 74 ~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~ 153 (363)
++|.+.|.+++ .++|+++++|+++++..|+++++++||.|++|+++++++++||+|++|.+||||||+|++.|+|+||+
T Consensus 82 ~~~~~~l~~~~-~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~ 160 (393)
T PF00022_consen 82 YIFSNLLKVDP-SDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVV 160 (393)
T ss_dssp HHHHTTT-SSG-GGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEE
T ss_pred ccccccccccc-ccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeeeeeeee
Confidence 99998899998 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeecccceEEeeccHHHHHHHHHHHHhccCCCc-------------------cccHHHHHHHHHHcccccCCHHHH-HH
Q 017944 154 EGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV-------------------NLSLYDVEKLKEQFSCCAEDELAY-EK 213 (363)
Q Consensus 154 dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~-------------------~~~~~~~~~iK~~~~~v~~~~~~~-~~ 213 (363)
||+++.+++.++++||++++++|+++|.+++... ..+..+++.+|+++|+++.+..+. ..
T Consensus 161 dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~ 240 (393)
T PF00022_consen 161 DGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEE 240 (393)
T ss_dssp TTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHH
T ss_pred eccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhccccccccccc
Confidence 9999999999999999999999999999864322 134668999999999999995531 12
Q ss_pred hcccCCCceeECCCCcEEEEeceeccccccccCCCCCCcccc-------cHHHHHHHHHHcCChhHHHHhhcCeEEccCc
Q 017944 214 TQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAH-------GIVEQLVHTISTVSSENHRQLLENTVLCGGT 286 (363)
Q Consensus 214 ~~~~~~~~~~~lp~~~~i~i~~~r~~~~E~lF~p~~~~~~~~-------~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~ 286 (363)
.........|.||||+.+.++.+|+.++|+||+|+..+.+.. +|+++|.++|++||.|.|+.|++|||||||+
T Consensus 241 ~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~ 320 (393)
T PF00022_consen 241 QASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGS 320 (393)
T ss_dssp HHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGG
T ss_pred ccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEeccc
Confidence 223345578999999999999999999999999999888766 9999999999999999999999999999999
Q ss_pred ccccchHHHHHhhh-ccCCCCcceEEeCCC-CCCCcCCcceeeeechhhhhccCCCCceeeehHHHhhcCccchhcccC
Q 017944 287 TSMTGFEDRFQKEA-GLCSSAIRPTLVKPP-EYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 363 (363)
Q Consensus 287 s~l~G~~~rL~~eL-~~~~~~~~i~v~~~~-~~~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~rk~~ 363 (363)
|++|||.+||++|| .+.|...++++...+ + |.+++|+|||++|++++|+++||||+||+|+|+++++||||
T Consensus 321 S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~------~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 321 SLIPGFKERLQQELRSLLPSSTKVKVIAPPSD------RQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp GGSTTHHHHHHHHHHHHSGTTSTEEEE--T-T------TTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred ccccchHHHHHHHhhhhhhccccceeccCchh------hhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence 99999999999999 888888899999988 7 99999999999999999999999999999999999999997
No 9
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=9.3e-77 Score=501.64 Aligned_cols=351 Identities=32% Similarity=0.552 Sum_probs=321.7
Q ss_pred ccEEEEcCCCcEEEeecCCCCCCceecccceeec------------cCCCccccCcccccC-Ccee-ccccCCeecCHHH
Q 017944 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV------------LEDGSSSVDNSTLVE-DVTV-DPVVRGFIRDWDA 67 (363)
Q Consensus 2 ~~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~------------~~~~~~g~~~~~~~~-~~~~-~p~~~g~i~~~~~ 67 (363)
++||.|.||.++|+||| |++.|.++||+.+++. .++..+| |++...+ .+++ ||+++|.+.|||+
T Consensus 5 ~viV~DnGTGfVKcGyA-g~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvG-deaselRs~L~i~YPmeNGivrnwdd 82 (389)
T KOG0677|consen 5 NVIVCDNGTGFVKCGYA-GENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVG-DEASELRSLLDINYPMENGIVRNWDD 82 (389)
T ss_pred CeEEEeCCCceEEeccc-cCCCcccccchhcCchhhhhhhhccCeehhhhecc-chHHHHHHHHhcCCccccccccChHH
Confidence 57999999999999999 9999999999999874 2456789 8887666 4444 9999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCCceEEEEecCCCce
Q 017944 68 MEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKI 147 (363)
Q Consensus 68 ~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t 147 (363)
++.+|+|.|.++|++++ .++.+++++||++|.++|++++|.+||++++.++++.-++++++||.|..||+|||.|.+.|
T Consensus 83 M~h~WDytF~ekl~idp-~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVT 161 (389)
T KOG0677|consen 83 MEHVWDYTFGEKLKIDP-TNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVT 161 (389)
T ss_pred HHHHHHhhhhhhccCCC-ccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCee
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCc--cccHHHHHHHHHHcccccCC-HHHHHHhccc-CCCcee
Q 017944 148 DIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV--NLSLYDVEKLKEQFSCCAED-ELAYEKTQKS-CEIEQH 223 (363)
Q Consensus 148 ~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~--~~~~~~~~~iK~~~~~v~~~-~~~~~~~~~~-~~~~~~ 223 (363)
+|+||++|+.+++-.++++++|+++|++|.++|..+||.+ ..+.+.++.+||++||++-| +.+.+...+. .-..+|
T Consensus 162 Hi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Y 241 (389)
T KOG0677|consen 162 HIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESY 241 (389)
T ss_pred EEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeee
Confidence 9999999999999999999999999999999999999988 57899999999999999998 4444333222 223789
Q ss_pred ECCCCcEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh-cc
Q 017944 224 TLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GL 302 (363)
Q Consensus 224 ~lp~~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL-~~ 302 (363)
+||||..|.++.|||.+||.||+|.+++.+.+|+.+++.++|+..++|.|..++++|||+||+++.||+..||++|| ++
T Consensus 242 tLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkql 321 (389)
T KOG0677|consen 242 TLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQL 321 (389)
T ss_pred ecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 65
Q ss_pred CC-----------CCcceEEeCCCCCCCcCCcceeeeechhhhhcc-CCCCceeeehHHHhhcCccchhcc
Q 017944 303 CS-----------SAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV-VFPQNQHITKADYDESGPSVVHRK 361 (363)
Q Consensus 303 ~~-----------~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l-~~~~~~~itk~ey~e~G~~~~~rk 361 (363)
.- ..+++++-.+|. |++.+|+||+++|++ ..-+++|+||+||+|.|.+++.+.
T Consensus 322 yl~rVL~~d~~~l~KfkiRIEdPPr------RKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 322 YLDRVLKGDTDKLKKFKIRIEDPPR------RKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred HHHHHHcCChhhhhheEEeccCCCc------cceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence 21 246888888998 999999999999994 677899999999999999988764
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=3.6e-75 Score=553.15 Aligned_cols=353 Identities=37% Similarity=0.647 Sum_probs=320.8
Q ss_pred ccEEEEcCCCcEEEeecCCCCCCceecccceeeccC---------CCccccCcccccC-Cce-eccccCCeecCHHHHHH
Q 017944 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE---------DGSSSVDNSTLVE-DVT-VDPVVRGFIRDWDAMED 70 (363)
Q Consensus 2 ~~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~~---------~~~~g~~~~~~~~-~~~-~~p~~~g~i~~~~~~~~ 70 (363)
++||||+||++||+||+ +++.|++++||++++..+ ..++| +++.... ... ++|+++|.|.||+.++.
T Consensus 2 ~~iviD~Gs~~~k~G~~-~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~G-~~a~~~~~~~~~~~P~~~G~i~d~~~~e~ 79 (373)
T smart00268 2 PAIVIDNGSGTIKAGFA-GEDEPQVVFPSIVGRPKDGKGMVGDAKDTFVG-DEAQEKRGGLELKYPIEHGIVENWDDMEK 79 (373)
T ss_pred CeEEEECCCCcEEEeeC-CCCCCcEEccceeeEecccccccCCCcceEec-chhhhcCCCceecCCCcCCEEeCHHHHHH
Confidence 58999999999999999 999999999999986422 24678 7764444 223 59999999999999999
Q ss_pred HHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCCceEEEEecCCCceEEE
Q 017944 71 LLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIA 150 (363)
Q Consensus 71 i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~ 150 (363)
+|+++|.+.|++++ .++|+++++|.++++..|+++++++||.+++|++++++++++|+|++|.++|+|||+|++.|+|+
T Consensus 80 i~~~~~~~~l~~~~-~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~ 158 (373)
T smart00268 80 IWDYTFFNELRVEP-EEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVV 158 (373)
T ss_pred HHHHHHhhhcCCCC-ccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEE
Confidence 99999988898888 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCeecccceEEeeccHHHHHHHHHHHHhccCCCc--cccHHHHHHHHHHcccccCC-HHHHHHhcc----cCCCcee
Q 017944 151 PVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV--NLSLYDVEKLKEQFSCCAED-ELAYEKTQK----SCEIEQH 223 (363)
Q Consensus 151 pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~--~~~~~~~~~iK~~~~~v~~~-~~~~~~~~~----~~~~~~~ 223 (363)
||+||+++.+++.++++||++++++|.++|++++..+ ..+.+.++.+|+++|+++.+ +++.+.... ......|
T Consensus 159 pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 238 (373)
T smart00268 159 PVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTY 238 (373)
T ss_pred EEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeE
Confidence 9999999999999999999999999999998754333 45678999999999999988 444433221 2234689
Q ss_pred ECCCCcEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh-cc
Q 017944 224 TLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GL 302 (363)
Q Consensus 224 ~lp~~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL-~~ 302 (363)
.+|||+.+.++.+|+.++|.||+|++.+.+..+|+++|.++|++||+|+|+.|++||+||||+|++|||.+||++|| ++
T Consensus 239 ~lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~ 318 (373)
T smart00268 239 ELPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQL 318 (373)
T ss_pred ECCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred CCCCcceEEeCCCCCCCcCCcceeeeechhhhhccCCCCceeeehHHHhhcCccchhcccC
Q 017944 303 CSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 363 (363)
Q Consensus 303 ~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~rk~~ 363 (363)
.|...++++...++ |.+++|.|||++|++++|++.||||+||+|+|+++++||||
T Consensus 319 ~p~~~~v~v~~~~~------~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 319 APKKLKVKVIAPPE------RKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred CCCCceeEEecCCC------CccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence 88888899988888 89999999999999999999999999999999999999997
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=4e-72 Score=531.77 Aligned_cols=350 Identities=37% Similarity=0.615 Sum_probs=315.9
Q ss_pred cEEEEcCCCcEEEeecCCCCCCceecccceeecc----------CCCccccCcccccCC--ce-eccccCCeecCHHHHH
Q 017944 3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL----------EDGSSSVDNSTLVED--VT-VDPVVRGFIRDWDAME 69 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~----------~~~~~g~~~~~~~~~--~~-~~p~~~g~i~~~~~~~ 69 (363)
+||||+||+++|+||+ +++.|++++||++++.. ....+| +++....+ +. ++|+++|++.||+.++
T Consensus 1 ~iViD~Gs~~~r~G~a-~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G-~~a~~~~~~~~~~~~P~~~G~i~d~~~~e 78 (371)
T cd00012 1 AVVIDNGSGTIKAGFA-GEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVG-EEALEKRGLGLELIYPIEHGIVVDWDDME 78 (371)
T ss_pred CEEEECCCCeEEEEeC-CCCCCceEeeccceeecCcccccccCCCceEEc-hhhhhCCCCceEEcccccCCEEeCHHHHH
Confidence 6899999999999999 99899999999997642 235678 77654442 44 5999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCCceEEEEecCCCceEE
Q 017944 70 DLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDI 149 (363)
Q Consensus 70 ~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v 149 (363)
.+|+|+|.+.+..++ .++|+++++|+++++..|+++++++||.+++++++++++++||+|++|.++|+|||+|++.|+|
T Consensus 79 ~~~~~~~~~~l~~~~-~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i 157 (371)
T cd00012 79 KIWDHLFFNELKVNP-EEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHV 157 (371)
T ss_pred HHHHHHHHHhcCCCC-CCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEE
Confidence 999999988888888 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCeecccceEEeeccHHHHHHHHHHHHhccCCC--ccccHHHHHHHHHHcccccCCHH-HHHH--hcccCCCceeE
Q 017944 150 APVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPS--VNLSLYDVEKLKEQFSCCAEDEL-AYEK--TQKSCEIEQHT 224 (363)
Q Consensus 150 ~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~--~~~~~~~~~~iK~~~~~v~~~~~-~~~~--~~~~~~~~~~~ 224 (363)
+||+||+++.+++.++++||++++++|.++|+++++. ...+.+.++.+|+++|+++.+.. +.+. .........|.
T Consensus 158 ~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 237 (371)
T cd00012 158 VPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYE 237 (371)
T ss_pred EEEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEE
Confidence 9999999999999999999999999999999988763 35667899999999999998833 3211 11222346899
Q ss_pred CCCCcEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh-ccC
Q 017944 225 LPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLC 303 (363)
Q Consensus 225 lp~~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL-~~~ 303 (363)
|||++.+.++.+|+.++|+||+|++.+....+|+++|.+++++||.+.|+.+++||+||||+|++|||.+||++|| .+.
T Consensus 238 lpd~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~ 317 (371)
T cd00012 238 LPDGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLA 317 (371)
T ss_pred CCCCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhC
Confidence 9999999999999999999999999998999999999999999999999999999999999999999999999999 777
Q ss_pred CC--CcceEEeCCCCCCCcCCcceeeeechhhhhccCCCCceeeehHHHhhcCccchhcc
Q 017944 304 SS--AIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRK 361 (363)
Q Consensus 304 ~~--~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~rk 361 (363)
|. ...+++...++ |.+++|+|||++|++++|+++||||+||+|+|+++++||
T Consensus 318 ~~~~~~~~~~~~~~~------~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 318 PPSKDTKVKVIAPPE------RKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred CcccceEEEEccCCC------ccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 76 55677777777 899999999999999999999999999999999999987
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=2.2e-68 Score=504.88 Aligned_cols=352 Identities=35% Similarity=0.587 Sum_probs=316.4
Q ss_pred cEEEEcCCCcEEEeecCCCCCCceecccceeec-----------cCCCccccCcccccCC---ce-eccccCCeecCHHH
Q 017944 3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV-----------LEDGSSSVDNSTLVED---VT-VDPVVRGFIRDWDA 67 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~-----------~~~~~~g~~~~~~~~~---~~-~~p~~~g~i~~~~~ 67 (363)
+||||+||+++|+||+ |++.|++++|+++.+. .++.++| +++....+ .+ ++|+++|.|.||+.
T Consensus 8 ~iVIDnGS~~~k~Gfa-g~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~-ne~~~~~~~~~~~~~~p~~~g~i~~W~~ 85 (444)
T COG5277 8 TIVIDNGSGTTKAGFA-GNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVG-NEAQNDRDNSLLELRYPIENGIILNWDA 85 (444)
T ss_pred eEEEeCCCceEEeeec-CCCCceeecccccccccccccccccccccccccC-chhhhccCCccceeecccccCccCCcHH
Confidence 4999999999999999 9999999999999875 2345777 76644443 22 69999999999999
Q ss_pred HHHHHHHHHhh--ccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCCc--eEEEEecC
Q 017944 68 MEDLLHHVLYA--GLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRI--SGCTVDIG 143 (363)
Q Consensus 68 ~~~i~~~~~~~--~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~--tglVVDiG 143 (363)
++++|+|+|.+ .+...+ .++|+++++|++++...|+++++++||.+++|++++..+++|++|+.|.. +|+|||+|
T Consensus 86 ~e~~w~~~~~~~~~~~~~~-~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G 164 (444)
T COG5277 86 MEQIWDYTFFNKGDLLPSP-EEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSG 164 (444)
T ss_pred HHHHHHHhhcchhhccCCC-cCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcC
Confidence 99999999988 577777 99999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCceEEEEeecCeecccceEEeeccHHHHHHHHHHHHhc-----cCCCcc-----ccHHHHHHHHHHcc-------cccC
Q 017944 144 HGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGK-----TNPSVN-----LSLYDVEKLKEQFS-------CCAE 206 (363)
Q Consensus 144 ~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~-----~~~~~~-----~~~~~~~~iK~~~~-------~v~~ 206 (363)
++.|+|+||+||.++.+++.++++||++++.+|.++|.. +++.+. .+.+.++.+|+++| |+..
T Consensus 165 ~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~ 244 (444)
T COG5277 165 DSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSL 244 (444)
T ss_pred CCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccchhh
Confidence 999999999999999999999999999999999999998 555553 34889999999999 8877
Q ss_pred C-HHHHHHhc-----------------ccCCCceeECCCCcEEEEece-eccccccccCCC--CCCccccc---------
Q 017944 207 D-ELAYEKTQ-----------------KSCEIEQHTLPDGQVIRIGKE-RYTVGEALFQPS--ILGLEAHG--------- 256 (363)
Q Consensus 207 ~-~~~~~~~~-----------------~~~~~~~~~lp~~~~i~i~~~-r~~~~E~lF~p~--~~~~~~~~--------- 256 (363)
+ +++.+... .......+.+|+++.+.++.+ ||.+||.||+|. ..+.+..+
T Consensus 245 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~ 324 (444)
T COG5277 245 DAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQEL 324 (444)
T ss_pred cchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhhhh
Confidence 6 22222111 112236888999999999998 999999999999 77666666
Q ss_pred ------------------HHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh-ccCCCCcceEEeCCCCC
Q 017944 257 ------------------IVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEY 317 (363)
Q Consensus 257 ------------------l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL-~~~~~~~~i~v~~~~~~ 317 (363)
|++++.++|+.||.+.|+.|++|||||||+|++|||.+||++|| .+.|....+++..+++
T Consensus 325 ~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~- 403 (444)
T COG5277 325 VAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPD- 403 (444)
T ss_pred hhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCc-
Confidence 99999999999999999999999999999999999999999999 8889888999999998
Q ss_pred CCcCCcceeeeechhhhhccCCCCceeeehHHHhhcCccchhcccC
Q 017944 318 MPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 363 (363)
Q Consensus 318 ~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~rk~~ 363 (363)
|.+.+|+|||++|++.+|+++||||+||+|+|++++++|+|
T Consensus 404 -----~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 404 -----PSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred -----hhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 99999999999999999999999999999999999999986
No 13
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=1.6e-66 Score=451.27 Aligned_cols=353 Identities=26% Similarity=0.466 Sum_probs=312.7
Q ss_pred CccEEEEcCCCcEEEeecCCCCCCceecccceeecc---CCCccccCcccccCCce----eccccCCeecCHHHHHHHHH
Q 017944 1 MEAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL---EDGSSSVDNSTLVEDVT----VDPVVRGFIRDWDAMEDLLH 73 (363)
Q Consensus 1 m~~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~---~~~~~g~~~~~~~~~~~----~~p~~~g~i~~~~~~~~i~~ 73 (363)
|.+||+|+|++++|+|++ +...| +++|++..+.+ ...++| ++.....|.. ++|+++|.+++|+.-.++|+
T Consensus 3 ~~tiVlDNGay~~KiG~s-~~~~p-~~vpNcl~kaK~~~rr~f~~-nei~ec~D~ssL~y~rp~erGyLvnW~tq~~vWD 79 (400)
T KOG0680|consen 3 TTTIVLDNGAYNIKIGPS-TNKKP-FVVPNCLAKAKFGRRRSFLA-NEIDECKDISSLFYRRPHERGYLVNWDTQSQVWD 79 (400)
T ss_pred CceEEEcCCceeEEeccC-CCCCc-eeccchhhhcccccchhhhh-hhhhhccCccceEEeehhhcceeEeehhHHHHHH
Confidence 578999999999999999 77677 45788876532 236778 6655544433 59999999999999999999
Q ss_pred HHHhhc-cCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccC---C--------CceEEEEe
Q 017944 74 HVLYAG-LGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAV---G--------RISGCTVD 141 (363)
Q Consensus 74 ~~~~~~-l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~---g--------~~tglVVD 141 (363)
|+|.+. ++.+. .++.+++++|.++-++..+...|++||.|++.+++=.+.+.++++-. + ...++|||
T Consensus 80 y~f~~~~~~~~~-~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVID 158 (400)
T KOG0680|consen 80 YCFGNPGFDVEG-KDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVID 158 (400)
T ss_pred HHhcCCCcCccc-CcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEe
Confidence 999864 33455 89999999999999999999999999999999999999999888751 1 23689999
Q ss_pred cCCCceEEEEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCccccHHHHHHHHHHcccccCC-HHHHHHhccc---
Q 017944 142 IGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAED-ELAYEKTQKS--- 217 (363)
Q Consensus 142 iG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~iK~~~~~v~~~-~~~~~~~~~~--- 217 (363)
.|++.|+|+|+.+|.+...+++++++||+.+|++|++.+..+++++.-...+++++||.+|||++| .++++.+...
T Consensus 159 sGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvmdET~vVNeiKEdvcfVSqnF~~~m~~~~~k~~~ 238 (400)
T KOG0680|consen 159 SGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVMDETYVVNEIKEDVCFVSQNFKEDMDIAKTKFQE 238 (400)
T ss_pred CCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcccchhhhhhhhhhheEEechhhHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999888888999999999999998 5555543322
Q ss_pred -CCCceeECCC-------------------CcEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhh
Q 017944 218 -CEIEQHTLPD-------------------GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLL 277 (363)
Q Consensus 218 -~~~~~~~lp~-------------------~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~ 277 (363)
.....|.||| .+.|.+++|||.+||+||+|+.+++.++||+++|.++|+.||.++|+.|+
T Consensus 239 ~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~ 318 (400)
T KOG0680|consen 239 NKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLL 318 (400)
T ss_pred ceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHHHHHHHHH
Confidence 2225666665 46788999999999999999999999999999999999999999999999
Q ss_pred cCeEEccCcccccchHHHHHhhh-ccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhccCCCCceeeehHHHhhcCcc
Q 017944 278 ENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPS 356 (363)
Q Consensus 278 ~nIvl~GG~s~l~G~~~rL~~eL-~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~ 356 (363)
.|||++||++++|||.+||..|| .++|.++.++|+.+.+ |..-+|-||+-++.+.+|...||||+||+|+|++
T Consensus 319 ~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~d------p~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~~ 392 (400)
T KOG0680|consen 319 ENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPED------PITFAWEGGSEFAKTDSFEKAVITREDYEEHGPS 392 (400)
T ss_pred hcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCC------cceeeehhccccccCcchhcceecHhhHhhcCch
Confidence 99999999999999999999999 9999999999999888 9999999999999999999999999999999999
Q ss_pred chhcccC
Q 017944 357 VVHRKCF 363 (363)
Q Consensus 357 ~~~rk~~ 363 (363)
++.+|+|
T Consensus 393 ~~~~~~~ 399 (400)
T KOG0680|consen 393 WCTKKRF 399 (400)
T ss_pred hhhhhcc
Confidence 9999976
No 14
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=6.5e-56 Score=385.67 Aligned_cols=349 Identities=27% Similarity=0.418 Sum_probs=298.2
Q ss_pred cEEEEcCCCcEEEeecCCCCCCceecccceeec------------------cCCCccccCcccccCCce-eccccCCeec
Q 017944 3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV------------------LEDGSSSVDNSTLVEDVT-VDPVVRGFIR 63 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~------------------~~~~~~g~~~~~~~~~~~-~~p~~~g~i~ 63 (363)
++|+|+|+.++|-||+ |...|++++|++++.. ..+.++| +++.+...+. .||+++|.+.
T Consensus 6 p~V~d~Gtgytklg~a-gn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig-~eal~~~~ysl~ypiRhg~ve 83 (415)
T KOG0678|consen 6 PCVIDNGTGYTKLGYA-GNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIG-DEALDATTYSLKYPIRHGQVE 83 (415)
T ss_pred ceeeccCcceeeeecc-ccCCcccccceeEEeccccccccchhhhhhccccccceecc-cHHHhhcccccccceeccccc
Confidence 4899999999999999 9999999999998753 1235678 8876643455 4999999999
Q ss_pred CHHHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCC--------Cc
Q 017944 64 DWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVG--------RI 135 (363)
Q Consensus 64 ~~~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g--------~~ 135 (363)
|||.+|.+|...+.+.|+..| ++|-.+|++|+.+++++|+.+++++||.|++|.+++.-++++|+.++- .-
T Consensus 84 ~wd~mer~~~q~ifkylr~eP-edh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~l 162 (415)
T KOG0678|consen 84 DWDLMERFWEQCIFKYLRAEP-EDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFL 162 (415)
T ss_pred cHHHHHHHHhhhhhhhhcCCc-ccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhhee
Confidence 999999999999999999999 999999999999999999999999999999999999999999887653 36
Q ss_pred eEEEEecCCCceEEEEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCc--cccHHHHHHHHHHcccccCC-HHHHH
Q 017944 136 SGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV--NLSLYDVEKLKEQFSCCAED-ELAYE 212 (363)
Q Consensus 136 tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~--~~~~~~~~~iK~~~~~v~~~-~~~~~ 212 (363)
||+|+|.|.+.|+|.||.+|+++-++++++|+.|+++|-.+.++|++++..+ ..+.+.++.+|+++||+++| -++..
T Consensus 163 tG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef~ 242 (415)
T KOG0678|consen 163 TGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEFA 242 (415)
T ss_pred eeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHHH
Confidence 8999999999999999999999999999999999999999999999887766 45678999999999999998 44444
Q ss_pred HhcccCCC--c---eeECCCC--cEEEEeceeccccccccCCCCCCcc-cccHHHHHHHHHHcCChhHHHHhhcCeEEcc
Q 017944 213 KTQKSCEI--E---QHTLPDG--QVIRIGKERYTVGEALFQPSILGLE-AHGIVEQLVHTISTVSSENHRQLLENTVLCG 284 (363)
Q Consensus 213 ~~~~~~~~--~---~~~lp~~--~~i~i~~~r~~~~E~lF~p~~~~~~-~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~G 284 (363)
+....+.. + ...+-.| ..++++.+||..+|++|+|.....+ ...+++++...|+.||+|+|+.||+||++.|
T Consensus 243 k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsg 322 (415)
T KOG0678|consen 243 KYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSG 322 (415)
T ss_pred HhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhcc
Confidence 43222111 1 1111222 3567789999999999999977644 5679999999999999999999999999999
Q ss_pred CcccccchHHHHHhhh-ccC--------------CCCcceEEeCCCCCCCcCCcceeeeechhhhhccCCCCceeeehHH
Q 017944 285 GTTSMTGFEDRFQKEA-GLC--------------SSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKAD 349 (363)
Q Consensus 285 G~s~l~G~~~rL~~eL-~~~--------------~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~e 349 (363)
|.+++++|..|+++++ .+. +..+.++++.... +.+++|.|||++|+.+.|-..+-||++
T Consensus 323 gst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~------qr~avwfggs~lastpef~~~~~tk~~ 396 (415)
T KOG0678|consen 323 GSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLL------QRTAVWFGGSKLASTPEFVPACHTKED 396 (415)
T ss_pred chHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhh------hhcceeccCccccCCcccccccCcchh
Confidence 9999999999999998 432 1233566666555 789999999999999999999999999
Q ss_pred HhhcCccchhc
Q 017944 350 YDESGPSVVHR 360 (363)
Q Consensus 350 y~e~G~~~~~r 360 (363)
|||+|++|++.
T Consensus 397 yee~g~si~r~ 407 (415)
T KOG0678|consen 397 YEEYGPSICRT 407 (415)
T ss_pred hhhhChhhhhc
Confidence 99999999875
No 15
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=4.7e-54 Score=395.93 Aligned_cols=352 Identities=24% Similarity=0.430 Sum_probs=291.7
Q ss_pred ccEEEEcCCCcEEEeecCCCCCCceecccceeeccCC------CccccCcccccC---CceeccccCCeecCHHHHHHHH
Q 017944 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLED------GSSSVDNSTLVE---DVTVDPVVRGFIRDWDAMEDLL 72 (363)
Q Consensus 2 ~~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~~~------~~~g~~~~~~~~---~~~~~p~~~g~i~~~~~~~~i~ 72 (363)
.|||||+||+.+||||+ |+..|+++|++++.+..+. -.+| +.....+ ...++|+++++|+||+.+|+++
T Consensus 24 ~piVIDNGS~~~RaGw~-ge~eP~lvFrNvl~r~Rdrk~~~s~t~vg-nd~~~~~~~Rs~~rSPFd~nVvtNwel~E~il 101 (645)
T KOG0681|consen 24 IPIVIDNGSYECRAGWA-GEKEPRLVFRNVLTRPRDRKLGASVTLVG-NDILNFQGVRSSPRSPFDRNVVTNWELMEQIL 101 (645)
T ss_pred CcEEEeCCceeEeeccc-CCCCccchhhhhhcccccccccccccccc-chhhhhhhhhccCCCCCcCCccccHHHHHHHH
Confidence 47999999999999999 9999999999999874321 2456 4332222 2226999999999999999999
Q ss_pred HHHHhhccCCCC-CCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhcc-CC---CceEEEEecCCCce
Q 017944 73 HHVLYAGLGWEE-GNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYA-VG---RISGCTVDIGHGKI 147 (363)
Q Consensus 73 ~~~~~~~l~~~~-~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~-~g---~~tglVVDiG~~~t 147 (363)
+|+|. +|+++. +-+||+++||+..+|...|..++++|||.+|+|+|.+.-.++.|.|- .+ ..+|+||++|++.|
T Consensus 102 DY~F~-~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T 180 (645)
T KOG0681|consen 102 DYIFG-KLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGHSAT 180 (645)
T ss_pred HHHHH-hcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecCCCcc
Confidence 99995 588776 24899999999999999999999999999999999999999999993 33 34799999999999
Q ss_pred EEEEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCc--cccHHHHHHHHHHcccccCC-HHHHHHh----------
Q 017944 148 DIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV--NLSLYDVEKLKEQFSCCAED-ELAYEKT---------- 214 (363)
Q Consensus 148 ~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~--~~~~~~~~~iK~~~~~v~~~-~~~~~~~---------- 214 (363)
+|.||.||..+...++++++||.+...||.++|..+++.+ .++...++.++..+||++.| .++..+.
T Consensus 181 ~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~d~~d~~~ 260 (645)
T KOG0681|consen 181 HVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILEMDYYDENR 260 (645)
T ss_pred eeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhhhhhhhccc
Confidence 9999999999999999999999999999999998765543 35555666666666665553 1110000
Q ss_pred ------------------------------------------c--------------------c-c--------------
Q 017944 215 ------------------------------------------Q--------------------K-S-------------- 217 (363)
Q Consensus 215 ------------------------------------------~--------------------~-~-------------- 217 (363)
. . +
T Consensus 261 ~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~~ll~v~~ 340 (645)
T KOG0681|consen 261 NYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQKFPLLNVPA 340 (645)
T ss_pred eEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhchhhcchh
Confidence 0 0 0
Q ss_pred --------------------------------------------------------------------------------
Q 017944 218 -------------------------------------------------------------------------------- 217 (363)
Q Consensus 218 -------------------------------------------------------------------------------- 217 (363)
T Consensus 341 eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~r~s~ 420 (645)
T KOG0681|consen 341 ELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQELKDRKSH 420 (645)
T ss_pred hhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence
Q ss_pred --------------------------C--------------------C----------------CceeE-----------
Q 017944 218 --------------------------C--------------------E----------------IEQHT----------- 224 (363)
Q Consensus 218 --------------------------~--------------------~----------------~~~~~----------- 224 (363)
. + ...|+
T Consensus 421 ~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d~~~ 500 (645)
T KOG0681|consen 421 ASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVEGTTDPRN 500 (645)
T ss_pred hhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCcccccccccccCccc
Confidence 0 0 00000
Q ss_pred --CC----CCcEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHh
Q 017944 225 --LP----DGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQK 298 (363)
Q Consensus 225 --lp----~~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~ 298 (363)
+| ..+.+.++.||+++||++|+|+++|.++.||.+++..++.+.|.+.+..|.+||+||||.|++||+.+||..
T Consensus 501 ~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~k 580 (645)
T KOG0681|consen 501 GVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKK 580 (645)
T ss_pred CcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHH
Confidence 00 124567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh-ccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhccCCCCceeeehHHHhhcCccchhccc
Q 017944 299 EA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKC 362 (363)
Q Consensus 299 eL-~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~rk~ 362 (363)
|| .+.|-+.+++|+...+ |...+|.||+.+|.-.+|...|+||+||+|+|+..+...+
T Consensus 581 Elt~mrP~gS~i~V~rasd------P~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~ 639 (645)
T KOG0681|consen 581 ELTSMRPVGSSINVVRASD------PVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEHV 639 (645)
T ss_pred HhheecccCCceEEEecCC------cchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHHh
Confidence 99 9989888999999988 9999999999999999999999999999999998876543
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=9.2e-40 Score=299.56 Aligned_cols=302 Identities=21% Similarity=0.333 Sum_probs=244.1
Q ss_pred eccccCCeecC----------HHHHHHHHHHHHhhccCCCC--CCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEE
Q 017944 54 VDPVVRGFIRD----------WDAMEDLLHHVLYAGLGWEE--GNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYS 121 (363)
Q Consensus 54 ~~p~~~g~i~~----------~~~~~~i~~~~~~~~l~~~~--~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~ 121 (363)
.+|+++|...- .+++++||+|++.+.|++.. ..++.+|++.|....+..-+.+..++|-++++.++.+
T Consensus 182 ~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v 261 (618)
T KOG0797|consen 182 YHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVV 261 (618)
T ss_pred ecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEE
Confidence 38999997643 45689999999999898876 2578999999999999888999999999999999999
Q ss_pred ecchhhhhccCCCceEEEEecCCCceEEEEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCc-------cccHHHH
Q 017944 122 SEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV-------NLSLYDV 194 (363)
Q Consensus 122 ~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~-------~~~~~~~ 194 (363)
+.+++|++||+|.+++||||||+..|+|+||.||..++++...+++||+++++.+..+|++.+..+ .+++.++
T Consensus 262 ~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d~lLl 341 (618)
T KOG0797|consen 262 HQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPIDWLLL 341 (618)
T ss_pred EhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCcccccccccccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999877655 4678899
Q ss_pred HHHHHHcccccCCHHHHHHhcccCCCceeECCCC----cEEEEeceeccccccccCCCCCCc------------------
Q 017944 195 EKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDG----QVIRIGKERYTVGEALFQPSILGL------------------ 252 (363)
Q Consensus 195 ~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp~~----~~i~i~~~r~~~~E~lF~p~~~~~------------------ 252 (363)
+.+|+++|........++.... .++-|++ ++..++.|...+|-.||.|.+++.
T Consensus 342 ~~LKe~Fc~l~~a~~~vQ~~~F-----~~R~pn~~~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d 416 (618)
T KOG0797|consen 342 NQLKEKFCHLRAAELGVQLTVF-----SYREPNPPTLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDRED 416 (618)
T ss_pred HHHHHHhccccHhhhhhhhhhh-----hccCCCCcceeeeeeccchhhccchhhhhhhhhhccccccccccccCCCCccc
Confidence 9999999988766444443211 1111222 122334444445555555543211
Q ss_pred --------------------------------------------------------------------------------
Q 017944 253 -------------------------------------------------------------------------------- 252 (363)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (363)
T Consensus 417 ~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~ 496 (618)
T KOG0797|consen 417 LFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLY 496 (618)
T ss_pred ccchhhhhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhccccee
Confidence
Q ss_pred -cc----ccHHHHHHHHHHcCC-hhHHHHhhcCeEEccCcccccchHHHHHhhh-ccCCCC----cceEEeCCCCCCCcC
Q 017944 253 -EA----HGIVEQLVHTISTVS-SENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSA----IRPTLVKPPEYMPEN 321 (363)
Q Consensus 253 -~~----~~l~~~I~~~i~~~~-~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL-~~~~~~----~~i~v~~~~~~~~~~ 321 (363)
.. ..+.+.|..+|..+- .|.+++|++.|.++||+.++||+.+.|++.+ ...|+. ..+.|+.+|..|.
T Consensus 497 ~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMd-- 574 (618)
T KOG0797|consen 497 ESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMD-- 574 (618)
T ss_pred ccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCC--
Confidence 01 134455777777764 4789999999999999999999999999999 555442 2688888886665
Q ss_pred CcceeeeechhhhhccCCCCceeeehHHHhhcCccchhcccC
Q 017944 322 LTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF 363 (363)
Q Consensus 322 ~~~~~~w~Gasi~a~l~~~~~~~itk~ey~e~G~~~~~rk~~ 363 (363)
|++.+|.||+|+|.+....++||++.||.-+|.++++-||.
T Consensus 575 -p~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 575 -PQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY 615 (618)
T ss_pred -chheEecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence 89999999999999999999999999999999999998873
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=3.6e-39 Score=302.10 Aligned_cols=302 Identities=17% Similarity=0.216 Sum_probs=235.6
Q ss_pred EEEEcCCCcEEEeecCCCCCCceecccceeecc--C-CCccccCcccccC-----Cce-eccccCCeecCHHHHHHHHHH
Q 017944 4 AVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL--E-DGSSSVDNSTLVE-----DVT-VDPVVRGFIRDWDAMEDLLHH 74 (363)
Q Consensus 4 vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~--~-~~~~g~~~~~~~~-----~~~-~~p~~~g~i~~~~~~~~i~~~ 74 (363)
++||+||+++|+|++ ++. +.+..||+++... + ..++| ++|.... .+. ++|+++|.|.||+.++.+|+|
T Consensus 11 vgiDlGt~~t~i~~~-~~~-~~~~~ps~v~~~~~~~~~~~vG-~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e~ll~~ 87 (335)
T PRK13930 11 IGIDLGTANTLVYVK-GKG-IVLNEPSVVAIDTKTGKVLAVG-EEAKEMLGRTPGNIEAIRPLKDGVIADFEATEAMLRY 87 (335)
T ss_pred eEEEcCCCcEEEEEC-CCC-EEEecCCEEEEECCCCeEEEEc-HHHHHhhhcCCCCeEEeecCCCCeEcCHHHHHHHHHH
Confidence 899999999999999 774 6777899998743 2 25789 8874332 344 599999999999999999999
Q ss_pred HHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCC-----ceEEEEecCCCceEE
Q 017944 75 VLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDI 149 (363)
Q Consensus 75 ~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v 149 (363)
++.+.+........+++++.|..++..+|+.+.+ +||.+|++.++++++|+||++++|. .+++|||+|+++|++
T Consensus 88 ~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdv 166 (335)
T PRK13930 88 FIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEV 166 (335)
T ss_pred HHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEE
Confidence 9965444333246789999999999988877666 7899999999999999999999987 568999999999999
Q ss_pred EEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCccccHHHHHHHHHHcccccCCHHHHHHhcccCCCceeECCCCc
Q 017944 150 APVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQ 229 (363)
Q Consensus 150 ~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp~~~ 229 (363)
+++.+|.++.. ...++||+++|+.|.+++..+ +.+..+.+.++++|+++|++..+..+... ........+.+|+
T Consensus 167 s~v~~g~~~~~--~~~~lGG~~id~~l~~~l~~~-~~~~~~~~~ae~~K~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-- 240 (335)
T PRK13930 167 AVISLGGIVYS--ESIRVAGDEMDEAIVQYVRRK-YNLLIGERTAEEIKIEIGSAYPLDEEESM-EVRGRDLVTGLPK-- 240 (335)
T ss_pred EEEEeCCEEee--cCcCchhHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHhhcCcCCCCCceE-EEECccCCCCCCe--
Confidence 99999998864 558999999999999998754 33345678999999999998765211100 0000011223333
Q ss_pred EEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcC-eEEccCcccccchHHHHHhhhccCCCCcc
Q 017944 230 VIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLEN-TVLCGGTTSMTGFEDRFQKEAGLCSSAIR 308 (363)
Q Consensus 230 ~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~n-Ivl~GG~s~l~G~~~rL~~eL~~~~~~~~ 308 (363)
.+.++.+++ .|++|+|. .++.+.|.+++++|+.+.+.++++| |+|+||+|++|||.+||++++ +.+
T Consensus 241 ~~~i~~~~~--~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-----~~~ 307 (335)
T PRK13930 241 TIEISSEEV--REALAEPL------QQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-----GLP 307 (335)
T ss_pred eEEECHHHH--HHHHHHHH------HHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-----CCC
Confidence 444554444 58888763 5799999999999999999999997 999999999999999999999 223
Q ss_pred eEEeCCCCCCCcCCcceeeeechhhhhc
Q 017944 309 PTLVKPPEYMPENLTLYSAWIGGAILAK 336 (363)
Q Consensus 309 i~v~~~~~~~~~~~~~~~~w~Gasi~a~ 336 (363)
+.+... |..++-.||++++.
T Consensus 308 v~~~~~--------p~~ava~Ga~~~~~ 327 (335)
T PRK13930 308 VHIAED--------PLTCVARGTGKALE 327 (335)
T ss_pred ceecCC--------HHHHHHHHHHHHHh
Confidence 444333 55888899999875
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=4.6e-38 Score=294.35 Aligned_cols=300 Identities=17% Similarity=0.223 Sum_probs=229.8
Q ss_pred cEEEEcCCCcEEEeecCCCCCCceecccceeeccC---CCccccCccccc-----CCce-eccccCCeecCHHHHHHHHH
Q 017944 3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE---DGSSSVDNSTLV-----EDVT-VDPVVRGFIRDWDAMEDLLH 73 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~~---~~~~g~~~~~~~-----~~~~-~~p~~~g~i~~~~~~~~i~~ 73 (363)
.|+||+||+++|+|++ ++.. .+.+||+++...+ ...+| ++|... ..+. .+|+++|.|.||+.++.+|+
T Consensus 7 ~igIDlGt~~~~i~~~-~~~~-~~~~ps~v~~~~~~~~~~~vG-~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~ll~ 83 (334)
T PRK13927 7 DLGIDLGTANTLVYVK-GKGI-VLNEPSVVAIRTDTKKVLAVG-EEAKQMLGRTPGNIVAIRPMKDGVIADFDVTEKMLK 83 (334)
T ss_pred eeEEEcCcceEEEEEC-CCcE-EEecCCEEEEECCCCeEEEec-HHHHHHhhcCCCCEEEEecCCCCeecCHHHHHHHHH
Confidence 4899999999999999 7755 6789999988533 24789 887433 2344 49999999999999999999
Q ss_pred HHHhhccCCCCCCCc-eEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCC-----ceEEEEecCCCce
Q 017944 74 HVLYAGLGWEEGNEG-QILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKI 147 (363)
Q Consensus 74 ~~~~~~l~~~~~~~~-~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t 147 (363)
+++.+.++. . .++ .++++.|...+. .++++++.+|+.++++.+.++++|+||++++|. .+++|||+|+++|
T Consensus 84 ~~~~~~~~~-~-~~~~~~vi~vP~~~~~-~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggtt 160 (334)
T PRK13927 84 YFIKKVHKN-F-RPSPRVVICVPSGITE-VERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTT 160 (334)
T ss_pred HHHHHHhhc-c-CCCCcEEEEeCCCCCH-HHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeE
Confidence 999877665 4 555 577777765555 555788899999999999999999999999986 4579999999999
Q ss_pred EEEEe-ecCeecccceEEeeccHHHHHHHHHHHHhccCCCccccHHHHHHHHHHcccccCCHHHHHHhcccCCCceeECC
Q 017944 148 DIAPV-IEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP 226 (363)
Q Consensus 148 ~v~pv-~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp 226 (363)
+++++ .+|...... .++||+++|++|.+++.+ .+.+..+.+.++++|+++|++..+.+.. ..........+.+|
T Consensus 161 dvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~-~~~~~~~~~~ae~iK~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 235 (334)
T PRK13927 161 EVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRR-NYNLLIGERTAERIKIEIGSAYPGDEVL-EMEVRGRDLVTGLP 235 (334)
T ss_pred EEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHH-HhCcCcCHHHHHHHHHHhhccCCCCCCc-eEEEeCcccCCCCC
Confidence 99999 777665543 489999999999998874 3333456788999999999987542110 00000000112222
Q ss_pred CCcEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcC-eEEccCcccccchHHHHHhhhccCCC
Q 017944 227 DGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLEN-TVLCGGTTSMTGFEDRFQKEAGLCSS 305 (363)
Q Consensus 227 ~~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~n-Ivl~GG~s~l~G~~~rL~~eL~~~~~ 305 (363)
+ .+.++.+++ .|++|+|. .++.+.|.+++++++.+.+.+++++ |+||||+|++|||.+||++++
T Consensus 236 ~--~~~i~~~~~--~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~----- 300 (334)
T PRK13927 236 K--TITISSNEI--REALQEPL------SAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET----- 300 (334)
T ss_pred e--EEEECHHHH--HHHHHHHH------HHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-----
Confidence 2 345555554 48888764 6799999999999999888889875 999999999999999999999
Q ss_pred CcceEEeCCCCCCCcCCcceeeeechhhhhc
Q 017944 306 AIRPTLVKPPEYMPENLTLYSAWIGGAILAK 336 (363)
Q Consensus 306 ~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~ 336 (363)
..++.+..+ |..++-.||++++.
T Consensus 301 ~~~v~~~~~--------P~~ava~Ga~~~~~ 323 (334)
T PRK13927 301 GLPVHVAED--------PLTCVARGTGKALE 323 (334)
T ss_pred CCCcEecCC--------HHHHHHHHHHHHHh
Confidence 234555544 45889999999875
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=7.9e-37 Score=285.59 Aligned_cols=303 Identities=17% Similarity=0.207 Sum_probs=232.1
Q ss_pred cEEEEcCCCcEEEeecCCCCCCceecccceeeccC-----C--CccccCccccc-----CCce-eccccCCeecCHHHHH
Q 017944 3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE-----D--GSSSVDNSTLV-----EDVT-VDPVVRGFIRDWDAME 69 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~~-----~--~~~g~~~~~~~-----~~~~-~~p~~~g~i~~~~~~~ 69 (363)
.|-||+||.++++... ++ .-.+..||+++...+ + ..+| ++|... ..+. ++|+++|.|.||+.++
T Consensus 4 ~~giDlGt~~s~i~~~-~~-~~~~~~psvv~~~~~~~~~~~~~~~vG-~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~ 80 (333)
T TIGR00904 4 DIGIDLGTANTLVYVK-GR-GIVLNEPSVVAIRTDRDAKTKSILAVG-HEAKEMLGKTPGNIVAIRPMKDGVIADFEVTE 80 (333)
T ss_pred eeEEecCcceEEEEEC-CC-CEEEecCCEEEEecCCCCCCCeEEEEh-HHHHHhhhcCCCCEEEEecCCCCEEEcHHHHH
Confidence 3789999999999665 43 445667999987532 2 5689 887543 2444 5999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCC-----ceEEEEecCC
Q 017944 70 DLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGH 144 (363)
Q Consensus 70 ~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~ 144 (363)
.+|+|++.+.+........++++++|+.++..+|+. ++.+|+.++++.++++++|+||+|++|. .+++|||+|+
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~ 159 (333)
T TIGR00904 81 KMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGG 159 (333)
T ss_pred HHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCC
Confidence 999999987665433122369999999999998877 6668899999999999999999999987 6789999999
Q ss_pred CceEEEEe-ecCeecccceEEeeccHHHHHHHHHHHHhccCCCccccHHHHHHHHHHcccccCCHHHHHHhcccCCCcee
Q 017944 145 GKIDIAPV-IEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQH 223 (363)
Q Consensus 145 ~~t~v~pv-~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~ 223 (363)
++|+++++ ++|...... .++||+++|+.|.+++.++ +....+.+.++++|+++|++..+..+............+
T Consensus 160 gttdvs~v~~~~~~~~~~---~~lGG~did~~l~~~l~~~-~~~~~~~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~ 235 (333)
T TIGR00904 160 GTTEVAVISLGGIVVSRS---IRVGGDEFDEAIINYIRRT-YNLLIGEQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVT 235 (333)
T ss_pred CeEEEEEEEeCCEEecCC---ccchHHHHHHHHHHHHHHH-hcccCCHHHHHHHHHHHhccccccccccceeecCccccC
Confidence 99999999 777666543 4899999999999988743 333456789999999999986641110000000011234
Q ss_pred ECCCCcEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhc-CeEEccCcccccchHHHHHhhhcc
Q 017944 224 TLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLE-NTVLCGGTTSMTGFEDRFQKEAGL 302 (363)
Q Consensus 224 ~lp~~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~-nIvl~GG~s~l~G~~~rL~~eL~~ 302 (363)
.+|++.. ++ +-.+.|++|+|- .++.+.|.+++++++.+.+.++++ +|+||||+|++|||.+||++++
T Consensus 236 ~~~~~~~--i~--~~~~~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-- 303 (333)
T TIGR00904 236 GLPRTIE--IT--SVEVREALQEPV------NQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-- 303 (333)
T ss_pred CCCeEEE--EC--HHHHHHHHHHHH------HHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH--
Confidence 5666543 33 336778888874 579999999999999999999997 7999999999999999999999
Q ss_pred CCCCcceEEeCCCCCCCcCCcceeeeechhhhhc
Q 017944 303 CSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 336 (363)
Q Consensus 303 ~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~ 336 (363)
..++.+. .+ |..++-.||++++.
T Consensus 304 ---~~~v~~~--~~------P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 304 ---GLPVIVA--DD------PLLCVAKGTGKALE 326 (333)
T ss_pred ---CCCceec--CC------hHHHHHHHHHHHHh
Confidence 2233333 33 56899999999864
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1.6e-35 Score=276.27 Aligned_cols=300 Identities=17% Similarity=0.252 Sum_probs=227.3
Q ss_pred ccEEEEcCCCcEEEeecCCCCCCceecccceeeccCC---CccccCcccccC-----Cce-eccccCCeecCHHHHHHHH
Q 017944 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLED---GSSSVDNSTLVE-----DVT-VDPVVRGFIRDWDAMEDLL 72 (363)
Q Consensus 2 ~~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~~~---~~~g~~~~~~~~-----~~~-~~p~~~g~i~~~~~~~~i~ 72 (363)
+.|-||+||.++++ |. ....-....||+++...++ ..+| ++|.... .+. .+|+++|.|.|||.++.+|
T Consensus 5 ~~~giDlGt~~~~i-~~-~~~~~~~~~ps~va~~~~~~~~~~vG-~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~~~~~l 81 (335)
T PRK13929 5 TEIGIDLGTANILV-YS-KNKGIILNEPSVVAVDTETKAVLAIG-TEAKNMIGKTPGKIVAVRPMKDGVIADYDMTTDLL 81 (335)
T ss_pred CeEEEEcccccEEE-EE-CCCcEEecCCcEEEEECCCCeEEEeC-HHHHHhhhcCCCcEEEEecCCCCccCCHHHHHHHH
Confidence 34789999999998 44 2322234479999875332 4689 8874432 333 5999999999999999999
Q ss_pred HHHHhh---ccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCC-----CceEEEEecCC
Q 017944 73 HHVLYA---GLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVG-----RISGCTVDIGH 144 (363)
Q Consensus 73 ~~~~~~---~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g-----~~tglVVDiG~ 144 (363)
++++.+ .++... ...++++++|+.++..+|+.+.+ +++.+|++.++++++|+||++++| ..+++|||+|+
T Consensus 82 ~~~~~~~~~~l~~~~-~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~ 159 (335)
T PRK13929 82 KQIMKKAGKNIGMTF-RKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGG 159 (335)
T ss_pred HHHHHHHHHhcCCCC-CCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCC
Confidence 999974 455555 56789999999999999999998 889999999999999999999997 46789999999
Q ss_pred CceEEEEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCccccHHHHHHHHHHcccccCCHHHHHHhcccCCCceeE
Q 017944 145 GKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHT 224 (363)
Q Consensus 145 ~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~ 224 (363)
++|+++++..|.++.. ...++||+++|++|.+++.. .+++..+.+.+|++|+++|++..+.++. ..........+.
T Consensus 160 gtt~v~vi~~~~~~~~--~~~~~GG~~id~~l~~~l~~-~~~~~~~~~~AE~iK~~l~~~~~~~~~~-~~~v~g~~~~~~ 235 (335)
T PRK13929 160 GTTEVAIISFGGVVSC--HSIRIGGDQLDEDIVSFVRK-KYNLLIGERTAEQVKMEIGYALIEHEPE-TMEVRGRDLVTG 235 (335)
T ss_pred CeEEEEEEEeCCEEEe--cCcCCHHHHHHHHHHHHHHH-HhCcCcCHHHHHHHHHHHcCCCCCCCCc-eEEEeCCccCCC
Confidence 9999999944444433 23689999999999999874 4444456789999999999986542110 000000011123
Q ss_pred CCCCcEEEEeceecc--ccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhc-CeEEccCcccccchHHHHHhhhc
Q 017944 225 LPDGQVIRIGKERYT--VGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLE-NTVLCGGTTSMTGFEDRFQKEAG 301 (363)
Q Consensus 225 lp~~~~i~i~~~r~~--~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~-nIvl~GG~s~l~G~~~rL~~eL~ 301 (363)
+| ..+.++.+++. +.|.+| .+.+.|.+++++|+++.+.++++ +|+||||+|++|||.+||++++
T Consensus 236 ~p--~~i~i~~~~~~~~i~~~l~----------~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~- 302 (335)
T PRK13929 236 LP--KTITLESKEIQGAMRESLL----------HILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI- 302 (335)
T ss_pred CC--eEEEEcHHHHHHHHHHHHH----------HHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-
Confidence 33 35666666655 466665 39999999999999999999998 6999999999999999999999
Q ss_pred cCCCCcceEEeCCCCCCCcCCcceeeeechhhhh
Q 017944 302 LCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 335 (363)
Q Consensus 302 ~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a 335 (363)
..++.+.. + |..++-.|+..+-
T Consensus 303 ----~~~v~~~~--~------P~~~Va~Ga~~~~ 324 (335)
T PRK13929 303 ----VVPVHVAA--N------PLESVAIGTGRSL 324 (335)
T ss_pred ----CCCceeCC--C------HHHHHHHHHHHHH
Confidence 22444433 3 5688888888763
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=5.5e-34 Score=260.50 Aligned_cols=301 Identities=20% Similarity=0.277 Sum_probs=220.8
Q ss_pred ccEEEEcCCCcEEEeecCCCCCCceecccceeeccCC---CccccCccccc-----CCce-eccccCCeecCHHHHHHHH
Q 017944 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLED---GSSSVDNSTLV-----EDVT-VDPVVRGFIRDWDAMEDLL 72 (363)
Q Consensus 2 ~~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~~~---~~~g~~~~~~~-----~~~~-~~p~~~g~i~~~~~~~~i~ 72 (363)
+-+-||+||.+|++... +.+-.+..||+++...+. ..+| ++|..+ .++. ++|+++|.|.|++..+.++
T Consensus 2 ~~igIDLGT~~t~i~~~--~~Giv~~epSvVA~~~~~~~i~avG-~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~~~~~l 78 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVK--GKGIVLNEPSVVAYDKDTGKILAVG-DEAKAMLGKTPDNIEVVRPLKDGVIADYEAAEEML 78 (326)
T ss_dssp SEEEEEE-SSEEEEEET--TTEEEEEEES-EEEETTT--EEEES-HHHHTTTTS-GTTEEEE-SEETTEESSHHHHHHHH
T ss_pred CceEEecCcccEEEEEC--CCCEEEecCcEEEEECCCCeEEEEh-HHHHHHhhcCCCccEEEccccCCcccCHHHHHHHH
Confidence 45789999999999544 445667789999875443 3468 777433 2555 5999999999999999999
Q ss_pred HHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCC-----ceEEEEecCCCce
Q 017944 73 HHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKI 147 (363)
Q Consensus 73 ~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t 147 (363)
+|++++.+.........++++.|...+...|+.+.+.+. ..|+..|+++++|+|||+|+|. ...+|||+|+++|
T Consensus 79 ~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~-~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtT 157 (326)
T PF06723_consen 79 RYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAAR-QAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTT 157 (326)
T ss_dssp HHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHH-HTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-E
T ss_pred HHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeE
Confidence 999988776533256679999999999999999988885 4899999999999999999984 3569999999999
Q ss_pred EEEEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCccccHHHHHHHHHHcccccCCHHHHHHhcccCCCceeECCC
Q 017944 148 DIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPD 227 (363)
Q Consensus 148 ~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp~ 227 (363)
+++.+..|.++.+ +.+++||+++++.+.+++++++ ++.+...++|++|++++++....++.. .+...-.+-+
T Consensus 158 diavislggiv~s--~si~~gG~~~DeaI~~~ir~~y-~l~Ig~~tAE~iK~~~g~~~~~~~~~~-----~~v~Grd~~t 229 (326)
T PF06723_consen 158 DIAVISLGGIVAS--RSIRIGGDDIDEAIIRYIREKY-NLLIGERTAEKIKIEIGSASPPEEEES-----MEVRGRDLIT 229 (326)
T ss_dssp EEEEEETTEEEEE--EEES-SHHHHHHHHHHHHHHHH-SEE--HHHHHHHHHHH-BSS--HHHHE-----EEEEEEETTT
T ss_pred EEEEEECCCEEEE--EEEEecCcchhHHHHHHHHHhh-CcccCHHHHHHHHHhcceeeccCCCce-----EEEECccccC
Confidence 9999999999865 6689999999999999999654 778999999999999999887633321 1112334455
Q ss_pred CcEE--EEe-ceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcC-eEEccCcccccchHHHHHhhhccC
Q 017944 228 GQVI--RIG-KERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLEN-TVLCGGTTSMTGFEDRFQKEAGLC 303 (363)
Q Consensus 228 ~~~i--~i~-~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~n-Ivl~GG~s~l~G~~~rL~~eL~~~ 303 (363)
|... .++ .+-..+.+..+ ..+.+.|.+.++++|++++.++++| |+||||+|+++||.++|++++
T Consensus 230 GlP~~~~i~~~ev~~ai~~~~---------~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~--- 297 (326)
T PF06723_consen 230 GLPKSIEITSSEVREAIEPPV---------DQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET--- 297 (326)
T ss_dssp TCEEEEEEEHHHHHHHHHHHH---------HHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH---
T ss_pred CCcEEEEEcHHHHHHHHHHHH---------HHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH---
Confidence 5543 443 34444444444 4699999999999999999998866 999999999999999999999
Q ss_pred CCCcceEEeCCCCCCCcCCcceeeeechhhhhc
Q 017944 304 SSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 336 (363)
Q Consensus 304 ~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~ 336 (363)
+.++++... |.+++-.|+..+..
T Consensus 298 --~~pV~va~~--------P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 298 --GVPVRVADD--------PLTAVARGAGKLLE 320 (326)
T ss_dssp --SS-EEE-SS--------TTTHHHHHHHHTTC
T ss_pred --CCCEEEcCC--------HHHHHHHHHHHHHh
Confidence 446666655 45889999887654
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=1.2e-32 Score=257.54 Aligned_cols=302 Identities=16% Similarity=0.224 Sum_probs=223.0
Q ss_pred cEEEEcCCCcEEEeecCCCCCCceecccceeeccC--C-CccccCccccc-----CCce-eccccCCeecCHHHHHHHHH
Q 017944 3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLE--D-GSSSVDNSTLV-----EDVT-VDPVVRGFIRDWDAMEDLLH 73 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~~--~-~~~g~~~~~~~-----~~~~-~~p~~~g~i~~~~~~~~i~~ 73 (363)
.+-||+||.++++... ++ ...+..||++....+ . ..+| ++|..+ ..+. .+|+++|.|.||+.++.+|+
T Consensus 5 ~~gIDlGt~~~~i~~~-~~-~~v~~~psvv~~~~~~~~i~~vG-~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~~~l~ 81 (336)
T PRK13928 5 DIGIDLGTANVLVYVK-GK-GIVLNEPSVVAIDKNTNKVLAVG-EEARRMVGRTPGNIVAIRPLRDGVIADYDVTEKMLK 81 (336)
T ss_pred eeEEEcccccEEEEEC-CC-CEEEccCCEEEEECCCCeEEEec-HHHHHhhhcCCCCEEEEccCCCCeEecHHHHHHHHH
Confidence 3789999999999666 34 455568999887532 2 3678 776433 2333 59999999999999999999
Q ss_pred HHHhhccCCCCCCCce-EEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCC-----ceEEEEecCCCce
Q 017944 74 HVLYAGLGWEEGNEGQ-ILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKI 147 (363)
Q Consensus 74 ~~~~~~l~~~~~~~~~-v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t 147 (363)
|++.+ +......++| +++++|...+.. +++.++.+++.+|++.+.++++|+||++++|. .+++|||+|+++|
T Consensus 82 ~~~~~-~~~~~~~~~p~~vitvP~~~~~~-~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggtt 159 (336)
T PRK13928 82 YFINK-ACGKRFFSKPRIMICIPTGITSV-EKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTT 159 (336)
T ss_pred HHHHH-HhccCCCCCCeEEEEeCCCCCHH-HHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeE
Confidence 99854 4333215666 888887776665 55777788899999999999999999999986 6789999999999
Q ss_pred EEEEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCccccHHHHHHHHHHcccccCCHHHHHHhcccCCCceeECCC
Q 017944 148 DIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPD 227 (363)
Q Consensus 148 ~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp~ 227 (363)
+++++.+|.++... ..++||+++|+.|.+.+.. .+......+.+|++|++++.+..+..+. ..........+.+|.
T Consensus 160 dvsvv~~g~~~~~~--~~~lGG~did~~i~~~l~~-~~~~~~~~~~ae~lK~~~~~~~~~~~~~-~~~v~g~~~~~~~~~ 235 (336)
T PRK13928 160 DIAVLSLGGIVTSS--SIKVAGDKFDEAIIRYIRK-KYKLLIGERTAEEIKIKIGTAFPGAREE-EMEIRGRDLVTGLPK 235 (336)
T ss_pred EEEEEEeCCEEEeC--CcCCHHHHHHHHHHHHHHH-HhchhcCHHHHHHHHHHhcccccccCCc-EEEEecccccCCCce
Confidence 99999999877653 5799999999999999873 3344456678999999998875431100 000000000111222
Q ss_pred CcEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhc-CeEEccCcccccchHHHHHhhhccCCCC
Q 017944 228 GQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLE-NTVLCGGTTSMTGFEDRFQKEAGLCSSA 306 (363)
Q Consensus 228 ~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~-nIvl~GG~s~l~G~~~rL~~eL~~~~~~ 306 (363)
.+.++.++ +.|+++.+- ..+.+.|.+++++++.+.+.+.++ +|+||||+|++||+.++|++++ .
T Consensus 236 --~~~i~~~~--~~eii~~~~------~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-----~ 300 (336)
T PRK13928 236 --TITVTSEE--IREALKEPV------SAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-----K 300 (336)
T ss_pred --EEEECHHH--HHHHHHHHH------HHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-----C
Confidence 23444333 336665442 568999999999999888888888 7999999999999999999999 2
Q ss_pred cceEEeCCCCCCCcCCcceeeeechhhhhc
Q 017944 307 IRPTLVKPPEYMPENLTLYSAWIGGAILAK 336 (363)
Q Consensus 307 ~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~ 336 (363)
.++.+.. + |..++-.||++++.
T Consensus 301 ~~v~~~~--~------P~~ava~Gaa~~~~ 322 (336)
T PRK13928 301 VPVYIAE--D------PISCVALGTGKMLE 322 (336)
T ss_pred CCceecC--C------HHHHHHHHHHHHHh
Confidence 2444443 3 56999999999864
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.96 E-value=1.9e-28 Score=216.14 Aligned_cols=305 Identities=16% Similarity=0.196 Sum_probs=226.0
Q ss_pred ccEEEEcCCCcEEEeecCCCCCCceecccceeecc--CC---CccccCccccc-----CCce-eccccCCeecCHHHHHH
Q 017944 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVL--ED---GSSSVDNSTLV-----EDVT-VDPVVRGFIRDWDAMED 70 (363)
Q Consensus 2 ~~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~--~~---~~~g~~~~~~~-----~~~~-~~p~~~g~i~~~~~~~~ 70 (363)
+.|-||+||.+|++..- +..-....||+++... +. ..+| ++|+.+ .++. ++|+++|+|.|++..+.
T Consensus 7 ~diGIDLGTanTlV~~k--~kgIVl~ePSVVAi~~~~~~~~v~aVG-~eAK~MlGrTP~ni~aiRPmkdGVIAd~~~te~ 83 (342)
T COG1077 7 NDIGIDLGTANTLVYVK--GKGIVLNEPSVVAIESEGKTKVVLAVG-EEAKQMLGRTPGNIVAIRPMKDGVIADFEVTEL 83 (342)
T ss_pred ccceeeecccceEEEEc--CceEEecCceEEEEeecCCCceEEEeh-HHHHHHhccCCCCceEEeecCCcEeecHHHHHH
Confidence 46789999999999544 4456667899988643 22 3578 887433 3554 69999999999999999
Q ss_pred HHHHHHhhccCCCC-CCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCC-----ceEEEEecCC
Q 017944 71 LLHHVLYAGLGWEE-GNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGH 144 (363)
Q Consensus 71 i~~~~~~~~l~~~~-~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~ 144 (363)
+++|.+++...-.. ...-.++++.|.-.+...|+.+-+.+ ++.+...|+++++|.+||+++|. +..+|||||+
T Consensus 84 ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGg 162 (342)
T COG1077 84 MLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGG 162 (342)
T ss_pred HHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCC
Confidence 99999876442222 13445888889999999898887777 55799999999999999999985 3479999999
Q ss_pred CceEEEEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCccccHHHHHHHHHHcccccCCHHH-HHHhcccCCCcee
Q 017944 145 GKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELA-YEKTQKSCEIEQH 223 (363)
Q Consensus 145 ~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~-~~~~~~~~~~~~~ 223 (363)
++|.|..+..|-++.. ....+||+.+++.+..+++ +.+++.+-+..+|+||.+.+++..+..+ ..+..........
T Consensus 163 GTTevaVISlggiv~~--~Sirv~GD~~De~Ii~yvr-~~~nl~IGe~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~ 239 (342)
T COG1077 163 GTTEVAVISLGGIVSS--SSVRVGGDKMDEAIIVYVR-KKYNLLIGERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVT 239 (342)
T ss_pred CceeEEEEEecCEEEE--eeEEEecchhhHHHHHHHH-HHhCeeecHHHHHHHHHHhcccccccCCccceeeEEeeeccc
Confidence 9999999988888765 5578999999999999998 5567778889999999999999875221 1111111111112
Q ss_pred ECCCCcEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcC-eEEccCcccccchHHHHHhhhcc
Q 017944 224 TLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLEN-TVLCGGTTSMTGFEDRFQKEAGL 302 (363)
Q Consensus 224 ~lp~~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~n-Ivl~GG~s~l~G~~~rL~~eL~~ 302 (363)
.+|....++-...+-...|.+ ..|.+.|...+.+||+++-.+.+.+ |+++||+|++.||.+.|.+|.
T Consensus 240 GlPk~i~i~s~ev~eal~~~v----------~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-- 307 (342)
T COG1077 240 GLPKTITINSEEIAEALEEPL----------NGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-- 307 (342)
T ss_pred CCCeeEEEcHHHHHHHHHHHH----------HHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc--
Confidence 233322222222222333333 5699999999999999999999999 999999999999999999999
Q ss_pred CCCCcceEEeCCCCCCCcCCcceeeeechhhhhc
Q 017944 303 CSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 336 (363)
Q Consensus 303 ~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~ 336 (363)
.+.+.-.++ |-.++-+|+.....
T Consensus 308 -----~~pv~ia~~------pL~~Va~G~G~~le 330 (342)
T COG1077 308 -----GVPVIIADD------PLTCVAKGTGKALE 330 (342)
T ss_pred -----CCeEEECCC------hHHHHHhccchhhh
Confidence 333333344 56777777777544
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.87 E-value=4.5e-21 Score=170.16 Aligned_cols=236 Identities=19% Similarity=0.244 Sum_probs=172.4
Q ss_pred EEcCCCcEEEeecCCCCCCceecccceeeccCCCccccCcccccCCceeccccCCeecCHHHHHHHHHHHHhhc-cCCCC
Q 017944 6 VDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAG-LGWEE 84 (363)
Q Consensus 6 iD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~~~~~~~~i~~~~~~~~-l~~~~ 84 (363)
||+||+++|+=.......+ ++ ++ .....|+.+|.|.|++..+.+++++.... -....
T Consensus 2 ~dig~~~ik~v~~~~~~~~-------~~-------~~--------~~~~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~ 59 (239)
T TIGR02529 2 VDLGTANIVIVVLDEDGQP-------VA-------GV--------MQFADVVRDGIVVDFLGAVEIVRRLKDTLEQKLGI 59 (239)
T ss_pred CCcccceEEEEEEecCCCE-------EE-------EE--------ecccccccCCeEEEhHHHHHHHHHHHHHHHHHhCC
Confidence 7999999998554112111 11 11 01147899999999999999999998531 11122
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCCceEEEEecCCCceEEEEeecCeecccceEE
Q 017944 85 GNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRR 164 (363)
Q Consensus 85 ~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~ 164 (363)
.-..++++.|...+..+|+.+.+.+ +..|+..+.++++|+|++++++....+|||+|+++|+++.+.+|.++.. ..
T Consensus 60 -~~~~vvisVP~~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~~~~~~~~~vvDiGggtt~i~i~~~G~i~~~--~~ 135 (239)
T TIGR02529 60 -ELTHAATAIPPGTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAAVLQIKNGAVVDVGGGTTGISILKKGKVIYS--AD 135 (239)
T ss_pred -CcCcEEEEECCCCCcccHHHHHHHH-HHcCCceEEEeehHHHHHHHhcCCCcEEEEeCCCcEEEEEEECCeEEEE--Ee
Confidence 3357999999998888887766555 6689999999999999999988877899999999999999999988864 56
Q ss_pred eeccHHHHHHHHHHHHhccCCCccccHHHHHHHHHHcccccCCHHHHHHhcccCCCceeECCCCcEEEEeceeccccccc
Q 017944 165 FEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEAL 244 (363)
Q Consensus 165 ~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~r~~~~E~l 244 (363)
.++||+++++.+.+.+. ++.+.+|++|...+. +.+.. .+.+.+
T Consensus 136 ~~~GG~~it~~Ia~~~~-------i~~~~AE~~K~~~~~----~~~~~--------------------------~~i~~~ 178 (239)
T TIGR02529 136 EPTGGTHMSLVLAGAYG-------ISFEEAEEYKRGHKD----EEEIF--------------------------PVVKPV 178 (239)
T ss_pred eecchHHHHHHHHHHhC-------CCHHHHHHHHHhcCC----HHHHH--------------------------HHHHHH
Confidence 79999999999988776 678899999987542 11110 011111
Q ss_pred cCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCcCCcc
Q 017944 245 FQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTL 324 (363)
Q Consensus 245 F~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~~~ 324 (363)
. ..+.+.|.+++++.++ ..|+||||+|++||+.++|++.+ +.++.+ +.+ |.
T Consensus 179 ~---------~~i~~~i~~~l~~~~~-------~~v~LtGG~a~ipgl~e~l~~~l-----g~~v~~--~~~------P~ 229 (239)
T TIGR02529 179 Y---------QKMASIVKRHIEGQGV-------KDLYLVGGACSFSGFADVFEKQL-----GLNVIK--PQH------PL 229 (239)
T ss_pred H---------HHHHHHHHHHHHhCCC-------CEEEEECchhcchhHHHHHHHHh-----CCCccc--CCC------CC
Confidence 1 2355566666665544 47999999999999999999999 223333 333 67
Q ss_pred eeeeechhh
Q 017944 325 YSAWIGGAI 333 (363)
Q Consensus 325 ~~~w~Gasi 333 (363)
+++-.|+.+
T Consensus 230 ~~va~Gaa~ 238 (239)
T TIGR02529 230 YVTPLGIAM 238 (239)
T ss_pred eehhheeec
Confidence 888888764
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.82 E-value=1.3e-18 Score=157.17 Aligned_cols=238 Identities=20% Similarity=0.285 Sum_probs=171.1
Q ss_pred EEEEcCCCcEEEeecCCCCCCceecccceeeccCCCccccCcccccCCceeccccCCeecCHHHHHHHHHHHHhh---cc
Q 017944 4 AVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYA---GL 80 (363)
Q Consensus 4 vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~~~~~~~~i~~~~~~~---~l 80 (363)
++||+||+.+|+-.+ +..+. .+ .+| +. ...+++.|.+.|++.....++++... .+
T Consensus 27 ~~iDiGSssi~~vv~--~~~~~-----~~-------~~~-~~-------~~~~vr~G~i~di~~a~~~i~~~~~~ae~~~ 84 (267)
T PRK15080 27 VGVDLGTANIVLAVL--DEDGQ-----PV-------AGA-LE-------WADVVRDGIVVDFIGAVTIVRRLKATLEEKL 84 (267)
T ss_pred EEEEccCceEEEEEE--cCCCC-----EE-------EEE-ec-------cccccCCCEEeeHHHHHHHHHHHHHHHHHHh
Confidence 579999999997666 32332 11 122 11 14688999999999999999888753 22
Q ss_pred CCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCCceEEEEecCCCceEEEEeecCeeccc
Q 017944 81 GWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (363)
Q Consensus 81 ~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~ 160 (363)
+.+ -..++++.|...+..+|..+. -+.+..|++-..++.++.+++.+.+...++|||+|+++|+++.+.+|.++..
T Consensus 85 g~~---i~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~ 160 (267)
T PRK15080 85 GRE---LTHAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGTTGISILKDGKVVYS 160 (267)
T ss_pred CCC---cCeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE
Confidence 322 245777888888777777666 5557789999999999999999888777899999999999999999998865
Q ss_pred ceEEeeccHHHHHHHHHHHHhccCCCccccHHHHHHHHHHcccccCCHHHHHHhcccCCCceeECCCCcEEEEeceeccc
Q 017944 161 ASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTV 240 (363)
Q Consensus 161 ~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~r~~~ 240 (363)
...++||+++|+.+.+.+. .+.+.+|.+|.... +.+++ ..+
T Consensus 161 --~~~~~GG~~it~~Ia~~l~-------i~~~eAE~lK~~~~----~~~~~--------------------------~~i 201 (267)
T PRK15080 161 --ADEPTGGTHMSLVLAGAYG-------ISFEEAEQYKRDPK----HHKEI--------------------------FPV 201 (267)
T ss_pred --ecccCchHHHHHHHHHHhC-------CCHHHHHHHHhccC----CHHHH--------------------------HHH
Confidence 4579999999999998876 67888999987642 11111 001
Q ss_pred cccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCc
Q 017944 241 GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPE 320 (363)
Q Consensus 241 ~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~ 320 (363)
.+.++ ..+.+.|.+.+++.+ .+.|+||||+|++||+.+.+++.+ ..++.+ .++
T Consensus 202 i~~~~---------~~i~~~i~~~l~~~~-------~~~IvLtGG~s~lpgl~e~l~~~l-----g~~v~~--~~~---- 254 (267)
T PRK15080 202 VKPVV---------EKMASIVARHIEGQD-------VEDIYLVGGTCCLPGFEEVFEKQT-----GLPVHK--PQH---- 254 (267)
T ss_pred HHHHH---------HHHHHHHHHHHhcCC-------CCEEEEECCcccchhHHHHHHHHh-----CCCccc--CCC----
Confidence 11111 124445555554432 368999999999999999999999 223333 334
Q ss_pred CCcceeeeechhhhh
Q 017944 321 NLTLYSAWIGGAILA 335 (363)
Q Consensus 321 ~~~~~~~w~Gasi~a 335 (363)
|.+++-+|+.+++
T Consensus 255 --P~~~~a~Gaa~~~ 267 (267)
T PRK15080 255 --PLFVTPLGIALSC 267 (267)
T ss_pred --chHHHHHHHHhhC
Confidence 6799999988763
No 26
>CHL00094 dnaK heat shock protein 70
Probab=99.74 E-value=5.7e-17 Score=163.14 Aligned_cols=296 Identities=17% Similarity=0.123 Sum_probs=174.9
Q ss_pred Cc-cEEEEcCCCcEEEeecCCCCCCcee--------cccceeecc-CCCccccCcccc-----cC------------Cc-
Q 017944 1 ME-AAVVDAGSKLLKAGPAIPDQAPSMV--------IPSQMKRVL-EDGSSSVDNSTL-----VE------------DV- 52 (363)
Q Consensus 1 m~-~vViD~Gs~~~k~G~~~ge~~P~~~--------~ps~~~~~~-~~~~~g~~~~~~-----~~------------~~- 52 (363)
|. .|-||+||.++++++. .+..|..+ +||+++... ++..+| +.|.. +. ..
T Consensus 1 m~~viGIDlGTt~s~va~~-~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG-~~A~~~~~~~p~~ti~~~KrliG~~~~ 78 (621)
T CHL00094 1 MGKVVGIDLGTTNSVVAVM-EGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVG-QIAKRQAVINPENTFYSVKRFIGRKFS 78 (621)
T ss_pred CCceEEEEeCcccEEEEEE-ECCEEEEEECCCCCcccceEEEEcCCCCEEEC-HHHHHhHHhCccceehhhHHhcCCChH
Confidence 54 4569999999999998 55556533 677776632 345667 44311 00 00
Q ss_pred ------eecccc----------------CCeecCHHHHHHHHHHHHhh---ccCCCCCCCceEEEEcCCCCCHHHHHHHH
Q 017944 53 ------TVDPVV----------------RGFIRDWDAMEDLLHHVLYA---GLGWEEGNEGQILFTDPLCSPKAVREQLV 107 (363)
Q Consensus 53 ------~~~p~~----------------~g~i~~~~~~~~i~~~~~~~---~l~~~~~~~~~v~l~~~~~~~~~~r~~l~ 107 (363)
..+|+. ...+...+....+++++... .++. .-..++++.|.+++..+|+.+.
T Consensus 79 ~~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~---~v~~~VItVPa~f~~~qR~a~~ 155 (621)
T CHL00094 79 EISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGE---TVTQAVITVPAYFNDSQRQATK 155 (621)
T ss_pred HHHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC---CCCeEEEEECCCCCHHHHHHHH
Confidence 011221 11223344555566665432 2221 2246899999999999998776
Q ss_pred HHhhcccCCCeEEEecchhhhhccCCC-----ceEEEEecCCCceEEEEeecCeec---ccceEEeeccHHHHHHHHHHH
Q 017944 108 QLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEGAVQ---HIASRRFEVGGMDLTKLLAQE 179 (363)
Q Consensus 108 e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG~~~---~~~~~~~~~GG~~l~~~l~~~ 179 (363)
+.+ +..|+..+.++++|.|||+++|. .+-+|+|+|+++++|+.+..+... .......++||+++++.|.++
T Consensus 156 ~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 234 (621)
T CHL00094 156 DAG-KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNW 234 (621)
T ss_pred HHH-HHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHH
Confidence 665 67899999999999999998874 457999999999999988544221 112233589999999999887
Q ss_pred Hhcc-----CCCcccc-------HHHHHHHHHHcccccCCHHHHHHhcccCCCceeECC-------CCcEEEEeceeccc
Q 017944 180 LGKT-----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP-------DGQVIRIGKERYTV 240 (363)
Q Consensus 180 l~~~-----~~~~~~~-------~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp-------~~~~i~i~~~r~~~ 240 (363)
+.++ +.+...+ ...+|++|+.++... ...+.+| ++..+...-.|-.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~--------------~~~i~i~~~~~~~~g~~~~~~~itR~~f 300 (621)
T CHL00094 235 LIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLT--------------QTEINLPFITATQTGPKHIEKTLTRAKF 300 (621)
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCC--------------ceEEEEeecccCCCCCeeEEEEEcHHHH
Confidence 6532 2222111 234566666654211 0112221 11122222222222
Q ss_pred cccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCc
Q 017944 241 GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPE 320 (363)
Q Consensus 241 ~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~ 320 (363)
.|++. | -...+...|.+++.+.. +...-.+.|+|+||+|++|++.+.|++.+.. + +....+
T Consensus 301 e~l~~-~-----l~~~~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l~~~fg~-----~--~~~~~~---- 361 (621)
T CHL00094 301 EELCS-D-----LINRCRIPVENALKDAK--LDKSDIDEVVLVGGSTRIPAIQELVKKLLGK-----K--PNQSVN---- 361 (621)
T ss_pred HHHHH-H-----HHHHHHHHHHHHHHHcC--CChhhCcEEEEECCccCChHHHHHHHHHhCC-----C--cCcCCC----
Confidence 22211 0 00123344445554432 2223357899999999999999999988811 1 122223
Q ss_pred CCcceeeeechhhhhcc
Q 017944 321 NLTLYSAWIGGAILAKV 337 (363)
Q Consensus 321 ~~~~~~~w~Gasi~a~l 337 (363)
|..++..||+++|..
T Consensus 362 --pdeava~GAA~~aa~ 376 (621)
T CHL00094 362 --PDEVVAIGAAVQAGV 376 (621)
T ss_pred --chhHHHhhhHHHHHH
Confidence 568899999999874
No 27
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.73 E-value=8.5e-17 Score=160.97 Aligned_cols=294 Identities=17% Similarity=0.189 Sum_probs=176.4
Q ss_pred cEEEEcCCCcEEEeecCCCCCCcee--------cccceeeccC-CCccccCcccccC-----------------Cc----
Q 017944 3 AAVVDAGSKLLKAGPAIPDQAPSMV--------IPSQMKRVLE-DGSSSVDNSTLVE-----------------DV---- 52 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~~ge~~P~~~--------~ps~~~~~~~-~~~~g~~~~~~~~-----------------~~---- 52 (363)
+|-||+||.++.+++. .+..|.++ +||+++...+ +..+| +.|.... .+
T Consensus 1 ~iGIDlGTtns~va~~-~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG-~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~ 78 (599)
T TIGR01991 1 AVGIDLGTTNSLVASV-RSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVG-KEALAAAAEDPKNTISSVKRLMGRSIEDIK 78 (599)
T ss_pred CEEEEEccccEEEEEE-ECCEEEEEECCCCCcccCeEEEEeCCCCEEec-HHHHHhhhhChhhhHHHHHHHhCCCccchh
Confidence 4679999999999997 55445533 6888876433 56777 5542110 00
Q ss_pred --eecccc--------------CCeecCHHHHHHHHHHHHh---hccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcc
Q 017944 53 --TVDPVV--------------RGFIRDWDAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFET 113 (363)
Q Consensus 53 --~~~p~~--------------~g~i~~~~~~~~i~~~~~~---~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~ 113 (363)
..+|+. .+.+...+....+++++.. +.++. .-..++++.|.+++..+|+.+.+. .+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~---~v~~~VItVPa~f~~~qR~a~~~A-a~~ 154 (599)
T TIGR01991 79 TFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGG---DLVGAVITVPAYFDDAQRQATKDA-ARL 154 (599)
T ss_pred hcccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCC---CcceEEEEECCCCCHHHHHHHHHH-HHH
Confidence 011321 2223334444555555532 22332 235699999999999999877665 477
Q ss_pred cCCCeEEEecchhhhhccCCC-----ceEEEEecCCCceEEEEee--cCee-cccceEEeeccHHHHHHHHHHHHhcc-C
Q 017944 114 FNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGGMDLTKLLAQELGKT-N 184 (363)
Q Consensus 114 ~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~GG~~l~~~l~~~l~~~-~ 184 (363)
.|++.+.++++|.|||++++. .+-+|+|+|+++++|+.+. +|.. +........+||.++++.|.+++.++ +
T Consensus 155 AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~ 234 (599)
T TIGR01991 155 AGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLG 234 (599)
T ss_pred cCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhC
Confidence 899999999999999988763 4579999999999999874 4432 11112235899999999999887643 2
Q ss_pred CCccccHH-------HHHHHHHHcccccCCHHHHHHhcccCCCceeECC-CCcEEEEeceeccccccccCCCCCCccccc
Q 017944 185 PSVNLSLY-------DVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP-DGQVIRIGKERYTVGEALFQPSILGLEAHG 256 (363)
Q Consensus 185 ~~~~~~~~-------~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp-~~~~i~i~~~r~~~~E~lF~p~~~~~~~~~ 256 (363)
.+...+.. .++.+|+.++.- ....+.++ +|....+.-.|-.+.+ ++.|- ...
T Consensus 235 ~~~~~~~~~~~~L~~~ae~aK~~LS~~--------------~~~~i~i~~~g~~~~~~itr~efe~-l~~~l-----l~~ 294 (599)
T TIGR01991 235 ISADLNPEDQRLLLQAARAAKEALTDA--------------ESVEVDFTLDGKDFKGKLTRDEFEA-LIQPL-----VQK 294 (599)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCC--------------ceEEEEEEECCcEEEEEEeHHHHHH-HHHHH-----HHH
Confidence 22222222 344444443211 11111111 3333333222222211 12110 023
Q ss_pred HHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhc
Q 017944 257 IVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 336 (363)
Q Consensus 257 l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~ 336 (363)
+.+.|.++++.... ...-...|+|+||+|++|++.+++++.+.. .+....+ |..++-.||+++|.
T Consensus 295 i~~~i~~~L~~a~~--~~~~id~ViLvGGssriP~V~~~l~~~f~~-------~~~~~~n------pdeaVA~GAai~a~ 359 (599)
T TIGR01991 295 TLSICRRALRDAGL--SVEEIKGVVLVGGSTRMPLVRRAVAELFGQ-------EPLTDID------PDQVVALGAAIQAD 359 (599)
T ss_pred HHHHHHHHHHHcCC--ChhhCCEEEEECCcCCChHHHHHHHHHhCC-------CCCCCCC------CcHHHHHHHHHHHH
Confidence 44555555554322 222357899999999999999999988721 1122233 67889999999986
Q ss_pred c
Q 017944 337 V 337 (363)
Q Consensus 337 l 337 (363)
.
T Consensus 360 ~ 360 (599)
T TIGR01991 360 L 360 (599)
T ss_pred H
Confidence 4
No 28
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.73 E-value=7.9e-17 Score=162.51 Aligned_cols=296 Identities=17% Similarity=0.164 Sum_probs=173.1
Q ss_pred Ccc-EEEEcCCCcEEEeecCCCCCCce--------ecccceeec-cCCCccccCcccccC-----C--------------
Q 017944 1 MEA-AVVDAGSKLLKAGPAIPDQAPSM--------VIPSQMKRV-LEDGSSSVDNSTLVE-----D-------------- 51 (363)
Q Consensus 1 m~~-vViD~Gs~~~k~G~~~ge~~P~~--------~~ps~~~~~-~~~~~~g~~~~~~~~-----~-------------- 51 (363)
|.+ |-||+||.++++++. .+..|.. .+||+++.. .++..+| +.|.... .
T Consensus 1 m~~viGIDlGTt~s~va~~-~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG-~~A~~~~~~~p~~~i~~~Kr~iG~~~~ 78 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVM-EGGEPKVIENAEGARTTPSVVAFTKDGERLVG-QPAKRQAVTNPENTIFSIKRLMGRRDE 78 (627)
T ss_pred CCcEEEEEeCcccEEEEEE-ECCEEEEEECCCCCcccceEEEEeCCCCEEEc-HHHHHhhhhCchhhHHHHHHHhCCCch
Confidence 764 569999999999998 4544543 367887764 3456777 5542110 0
Q ss_pred -----ceecccc-----C--------Cee-cCHHHHHHHHHHHHh---hccCCCCCCCceEEEEcCCCCCHHHHHHHHHH
Q 017944 52 -----VTVDPVV-----R--------GFI-RDWDAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLVQL 109 (363)
Q Consensus 52 -----~~~~p~~-----~--------g~i-~~~~~~~~i~~~~~~---~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~ 109 (363)
...+|++ + |.. .-.+....+++++.. +.++. .-..++++.|.+++..+|+.+.+.
T Consensus 79 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~---~v~~~VItVPa~f~~~qR~a~~~A 155 (627)
T PRK00290 79 EVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGE---KVTEAVITVPAYFNDAQRQATKDA 155 (627)
T ss_pred HHHHHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCC---CCceEEEEECCCCCHHHHHHHHHH
Confidence 0012221 1 111 112333444444422 22322 234699999999999999877655
Q ss_pred hhcccCCCeEEEecchhhhhccCCC-----ceEEEEecCCCceEEEEeecCe--e-cccceEEeeccHHHHHHHHHHHHh
Q 017944 110 MFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEGA--V-QHIASRRFEVGGMDLTKLLAQELG 181 (363)
Q Consensus 110 lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG~--~-~~~~~~~~~~GG~~l~~~l~~~l~ 181 (363)
+ +..|++.+.++++|.|||+++|. .+.+|+|+|+++++|+.+.-+. . +.......++||.++++.|.+++.
T Consensus 156 a-~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~ 234 (627)
T PRK00290 156 G-KIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLA 234 (627)
T ss_pred H-HHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHH
Confidence 4 67899999999999999998863 5679999999999998874432 1 111222357999999999988765
Q ss_pred cc-----CCCcccc-------HHHHHHHHHHcccccCCHHHHHHhcccCCCceeECC----C--C-cEEEEeceeccccc
Q 017944 182 KT-----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP----D--G-QVIRIGKERYTVGE 242 (363)
Q Consensus 182 ~~-----~~~~~~~-------~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp----~--~-~~i~i~~~r~~~~E 242 (363)
++ +.+...+ ...++++|+.++.-. ...+.+| | | ..+.+.-.|-.+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~--------------~~~i~i~~~~~d~~g~~~~~~~itR~~fe~ 300 (627)
T PRK00290 235 DEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQ--------------QTEINLPFITADASGPKHLEIKLTRAKFEE 300 (627)
T ss_pred HHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCC--------------eEEEEEeecccCCCCCeEEEEEECHHHHHH
Confidence 32 2222111 124555555543211 1111111 1 1 22222222222211
Q ss_pred cccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCcCC
Q 017944 243 ALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENL 322 (363)
Q Consensus 243 ~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~ 322 (363)
++.|- ...+.+.|.++++..... ..-...|+|+||+|++|.+.++|++.+.. + +....+
T Consensus 301 -l~~~l-----~~~~~~~i~~~l~~a~~~--~~~id~ViLvGGssriP~v~~~l~~~fg~-----~--~~~~~n------ 359 (627)
T PRK00290 301 -LTEDL-----VERTIEPCKQALKDAGLS--VSDIDEVILVGGSTRMPAVQELVKEFFGK-----E--PNKGVN------ 359 (627)
T ss_pred -HHHHH-----HHHHHHHHHHHHHHcCCC--hhhCcEEEEECCcCCChHHHHHHHHHhCC-----C--CCcCcC------
Confidence 11110 023455555555554332 22257899999999999999999988711 1 122233
Q ss_pred cceeeeechhhhhcc
Q 017944 323 TLYSAWIGGAILAKV 337 (363)
Q Consensus 323 ~~~~~w~Gasi~a~l 337 (363)
|..++..||+++|..
T Consensus 360 pdeava~GAa~~aa~ 374 (627)
T PRK00290 360 PDEVVAIGAAIQGGV 374 (627)
T ss_pred ChHHHHHhHHHHHHH
Confidence 668899999999863
No 29
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.71 E-value=2.1e-16 Score=159.57 Aligned_cols=296 Identities=17% Similarity=0.156 Sum_probs=171.5
Q ss_pred Ccc-EEEEcCCCcEEEeecCCCCCCcee--------cccceeecc-CCCccccCcccccC-----C------------c-
Q 017944 1 MEA-AVVDAGSKLLKAGPAIPDQAPSMV--------IPSQMKRVL-EDGSSSVDNSTLVE-----D------------V- 52 (363)
Q Consensus 1 m~~-vViD~Gs~~~k~G~~~ge~~P~~~--------~ps~~~~~~-~~~~~g~~~~~~~~-----~------------~- 52 (363)
|.. |-||+||.++++++. .+..|..+ +||+++... ++.++| +.|.... + +
T Consensus 1 m~~viGIDlGTt~s~va~~-~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG-~~A~~~~~~~p~~ti~~~KrliG~~~~ 78 (653)
T PRK13411 1 MGKVIGIDLGTTNSCVAVL-EGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVG-QLAKRQAVTNAENTVYSIKRFIGRRWD 78 (653)
T ss_pred CCcEEEEEeCcccEEEEEE-ECCEEEEEECCCCCccCceEEEEeCCCCEEEc-HHHHHhhhhCcccchHHHHHHhCCCcc
Confidence 654 569999999999998 45455543 588887643 356777 5542110 0 0
Q ss_pred ------eeccc-----cCCe--------ecC-HHHHHHHHHHHHh---hccCCCCCCCceEEEEcCCCCCHHHHHHHHHH
Q 017944 53 ------TVDPV-----VRGF--------IRD-WDAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLVQL 109 (363)
Q Consensus 53 ------~~~p~-----~~g~--------i~~-~~~~~~i~~~~~~---~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~ 109 (363)
..+|+ .+|. ... .+....+++++.. ..++. .-..++++.|.+++..+|+.+.+.
T Consensus 79 d~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~---~v~~~VITVPa~f~~~qR~a~~~A 155 (653)
T PRK13411 79 DTEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGE---PVTQAVITVPAYFTDAQRQATKDA 155 (653)
T ss_pred chhHHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCC---CcceEEEEECCCCCcHHHHHHHHH
Confidence 01121 1121 111 2222333444322 22322 235699999999999999877664
Q ss_pred hhcccCCCeEEEecchhhhhccCCC------ceEEEEecCCCceEEEEee--cCee-cccceEEeeccHHHHHHHHHHHH
Q 017944 110 MFETFNISGFYSSEQAVLSLYAVGR------ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGGMDLTKLLAQEL 180 (363)
Q Consensus 110 lfe~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~GG~~l~~~l~~~l 180 (363)
.+..|+..+.++++|.|||+++|. .+-+|+|+|+++++|+.+. +|.. +........+||.++++.|.+++
T Consensus 156 -a~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l 234 (653)
T PRK13411 156 -GTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWL 234 (653)
T ss_pred -HHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHH
Confidence 467899999999999999998864 3469999999999998763 2322 22222234799999999988776
Q ss_pred hcc-----CCCcccc-------HHHHHHHHHHcccccCCHHHHHHhcccCCCceeECC----C---CcEEEEeceecccc
Q 017944 181 GKT-----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP----D---GQVIRIGKERYTVG 241 (363)
Q Consensus 181 ~~~-----~~~~~~~-------~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp----~---~~~i~i~~~r~~~~ 241 (363)
.++ +.+...+ ...+++.|+.++.-. ...+.+| | +..+.+.-.|-.+.
T Consensus 235 ~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~--------------~~~i~i~~~~~d~~~~~~~~~~itR~~fe 300 (653)
T PRK13411 235 VENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSML--------------TTSINLPFITADETGPKHLEMELTRAKFE 300 (653)
T ss_pred HHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC--------------ceEEEEeeeccCCCCCeeEEEEEcHHHHH
Confidence 532 2222111 234455555543211 1111111 1 12222222222221
Q ss_pred ccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh-ccCCCCcceEEeCCCCCCCc
Q 017944 242 EALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPE 320 (363)
Q Consensus 242 E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL-~~~~~~~~i~v~~~~~~~~~ 320 (363)
+ ++.|- ...+.+.|.+++..... ...-.+.|+|+||+|++|.+.++|++.+ .. .+....+
T Consensus 301 ~-l~~~l-----~~~~~~~i~~~L~~a~~--~~~~id~ViLvGGssriP~v~~~l~~~f~~~-------~~~~~~n---- 361 (653)
T PRK13411 301 E-LTKDL-----VEATIEPMQQALKDAGL--KPEDIDRVILVGGSTRIPAVQEAIQKFFGGK-------QPDRSVN---- 361 (653)
T ss_pred H-HHHHH-----HHHHHHHHHHHHHHcCC--CHHHCcEEEEECCCCCcchHHHHHHHHcCCc-------CcCCCCC----
Confidence 1 11110 02344555555555432 2333578999999999999999999877 21 1222233
Q ss_pred CCcceeeeechhhhhcc
Q 017944 321 NLTLYSAWIGGAILAKV 337 (363)
Q Consensus 321 ~~~~~~~w~Gasi~a~l 337 (363)
|..++-.||++.|..
T Consensus 362 --pdeaVA~GAAi~aa~ 376 (653)
T PRK13411 362 --PDEAVALGAAIQAGV 376 (653)
T ss_pred --chHHHHHHHHHHHHh
Confidence 568888999999863
No 30
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.71 E-value=3.2e-16 Score=158.03 Aligned_cols=296 Identities=16% Similarity=0.136 Sum_probs=170.9
Q ss_pred Ccc-EEEEcCCCcEEEeecCCCCCCce--------ecccceeec-cCCCccccCccccc-----CC----ce--------
Q 017944 1 MEA-AVVDAGSKLLKAGPAIPDQAPSM--------VIPSQMKRV-LEDGSSSVDNSTLV-----ED----VT-------- 53 (363)
Q Consensus 1 m~~-vViD~Gs~~~k~G~~~ge~~P~~--------~~ps~~~~~-~~~~~~g~~~~~~~-----~~----~~-------- 53 (363)
|.+ |-||+||.++++++. .+..|.. .+||+++.. .++.++| +.|... .+ +.
T Consensus 1 m~~viGIDlGTt~s~va~~-~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG-~~A~~~~~~~p~~ti~~~KRliG~~~~ 78 (668)
T PRK13410 1 MGRIVGIDLGTTNSVVAVM-EGGKPVVIANAEGMRTTPSVVGFTKDGELLVG-QLARRQLVLNPQNTFYNLKRFIGRRYD 78 (668)
T ss_pred CCcEEEEEeCCCcEEEEEE-ECCeEEEEECCCCCccCceEEEEeCCCCEEEC-HHHHHhhHhCccceehHHhhhhCCCch
Confidence 654 559999999999998 5545543 368888764 3456777 544211 00 00
Q ss_pred -------ecccc-----CCe-----------ecCHHHHHHHHHHHHh---hccCCCCCCCceEEEEcCCCCCHHHHHHHH
Q 017944 54 -------VDPVV-----RGF-----------IRDWDAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLV 107 (363)
Q Consensus 54 -------~~p~~-----~g~-----------i~~~~~~~~i~~~~~~---~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~ 107 (363)
.+|+. +|. +.-.+....+++++.. ..++. .-..++++.|.+++..+|+.+.
T Consensus 79 ~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~---~v~~~VITVPa~f~~~qR~a~~ 155 (668)
T PRK13410 79 ELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGE---PVTGAVITVPAYFNDSQRQATR 155 (668)
T ss_pred hhHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC---CcceEEEEECCCCCHHHHHHHH
Confidence 01221 121 1112233344444332 22322 2246999999999999998766
Q ss_pred HHhhcccCCCeEEEecchhhhhccCCC-----ceEEEEecCCCceEEEEee--cCee-cccceEEeeccHHHHHHHHHHH
Q 017944 108 QLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGGMDLTKLLAQE 179 (363)
Q Consensus 108 e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~GG~~l~~~l~~~ 179 (363)
+.+ +..|+..+.++++|.|||+++|. .+-+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|.++
T Consensus 156 ~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~ 234 (668)
T PRK13410 156 DAG-RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDW 234 (668)
T ss_pred HHH-HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHH
Confidence 554 77899999999999999998874 4579999999999998875 3322 2222223579999999998877
Q ss_pred Hhcc-----CCCcccc-------HHHHHHHHHHcccccCCHHHHHHhcccCCCceeECC----C--C-cEEEEeceeccc
Q 017944 180 LGKT-----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP----D--G-QVIRIGKERYTV 240 (363)
Q Consensus 180 l~~~-----~~~~~~~-------~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp----~--~-~~i~i~~~r~~~ 240 (363)
+..+ +.+...+ ...++++|+.++... ...+.+| + | ..+...-.|-.+
T Consensus 235 l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~--------------~~~i~i~~~~~~~~g~~~~~~~itR~~F 300 (668)
T PRK13410 235 LAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVS--------------VTDISLPFITATEDGPKHIETRLDRKQF 300 (668)
T ss_pred HHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC--------------ceEEEEeeeecCCCCCeeEEEEECHHHH
Confidence 6532 2222111 124455555543211 1112221 1 1 122222222222
Q ss_pred cccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCc
Q 017944 241 GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPE 320 (363)
Q Consensus 241 ~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~ 320 (363)
.++. .| -...+.+.|.+++.... +...-...|+|+||+|++|.+.+.+++.+.. + +....+
T Consensus 301 E~l~-~~-----l~~r~~~~i~~~L~~ag--~~~~dId~VvLVGGssRiP~V~~~l~~~fg~-----~--~~~~~n---- 361 (668)
T PRK13410 301 ESLC-GD-----LLDRLLRPVKRALKDAG--LSPEDIDEVVLVGGSTRMPMVQQLVRTLIPR-----E--PNQNVN---- 361 (668)
T ss_pred HHHH-HH-----HHHHHHHHHHHHHHHcC--CChhhCcEEEEECCccccHHHHHHHHHHcCC-----C--cccCCC----
Confidence 2211 01 00224444455554422 2223357899999999999999999987721 1 112223
Q ss_pred CCcceeeeechhhhhcc
Q 017944 321 NLTLYSAWIGGAILAKV 337 (363)
Q Consensus 321 ~~~~~~~w~Gasi~a~l 337 (363)
|..++-.||+++|..
T Consensus 362 --pdeaVA~GAAi~aa~ 376 (668)
T PRK13410 362 --PDEVVAVGAAIQAGI 376 (668)
T ss_pred --CchHHHHhHHHHHHh
Confidence 568888999999874
No 31
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.70 E-value=8e-16 Score=154.50 Aligned_cols=291 Identities=18% Similarity=0.157 Sum_probs=170.7
Q ss_pred cEEEEcCCCcEEEeecCCCCCCcee--------cccceeeccCCCccccCccccc-----C-------------------
Q 017944 3 AAVVDAGSKLLKAGPAIPDQAPSMV--------IPSQMKRVLEDGSSSVDNSTLV-----E------------------- 50 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~~ge~~P~~~--------~ps~~~~~~~~~~~g~~~~~~~-----~------------------- 50 (363)
.|-||+||.++.+++. .+..|..+ +||++....++..+| +.|... .
T Consensus 29 viGIDLGTTnS~vA~~-~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG-~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v 106 (657)
T PTZ00186 29 VIGVDLGTTYSCVATM-DGDKARVLENSEGFRTTPSVVAFKGSEKLVG-LAAKRQAITNPQSTFYAVKRLIGRRFEDEHI 106 (657)
T ss_pred EEEEEeCcCeEEEEEE-eCCceEEeecCCCCcccceEEEECCCCEEEc-HHHHHhhhhCchhHHHHHHHHhccccccHHH
Confidence 4669999999999998 55445433 677776654555666 443111 0
Q ss_pred --Cceecccc--------------CCeecC-HHHHHHHHHHHHh---hccCCCCCCCceEEEEcCCCCCHHHHHHHHHHh
Q 017944 51 --DVTVDPVV--------------RGFIRD-WDAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLVQLM 110 (363)
Q Consensus 51 --~~~~~p~~--------------~g~i~~-~~~~~~i~~~~~~---~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~l 110 (363)
.+..+|++ .|.... .+....+++++-. +.++. .-..++++.|.++...+|+.+.+ .
T Consensus 107 ~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~---~v~~aVITVPayF~~~qR~at~~-A 182 (657)
T PTZ00186 107 QKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGH---KVSNAVVTCPAYFNDAQRQATKD-A 182 (657)
T ss_pred HHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCC---ccceEEEEECCCCChHHHHHHHH-H
Confidence 00012321 122222 2222333444321 22332 22469999999999999976655 4
Q ss_pred hcccCCCeEEEecchhhhhccCCC-----ceEEEEecCCCceEEEEee--cCeec-ccceEEeeccHHHHHHHHHHHHhc
Q 017944 111 FETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI--EGAVQ-HIASRRFEVGGMDLTKLLAQELGK 182 (363)
Q Consensus 111 fe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~~-~~~~~~~~~GG~~l~~~l~~~l~~ 182 (363)
.+..|+..+.++++|.|||+++|. .+-+|+|+|+++++|+.+. +|... ..+.....+||+++++.|.+++.+
T Consensus 183 a~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~ 262 (657)
T PTZ00186 183 GTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILE 262 (657)
T ss_pred HHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHH
Confidence 477899999999999999998874 4579999999999999875 66442 222224589999999988876653
Q ss_pred c-----CCCcccc-------HHHHHHHHHHcccccCCHHHHHHhcccCCCceeECC------CC-cEEEEeceecccc--
Q 017944 183 T-----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP------DG-QVIRIGKERYTVG-- 241 (363)
Q Consensus 183 ~-----~~~~~~~-------~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp------~~-~~i~i~~~r~~~~-- 241 (363)
+ +.+...+ ...+|+.|+.++.... ....+| +| ..+.+.-.|-.+.
T Consensus 263 ~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~--------------~~i~i~~i~~~~~g~~~~~~~ItR~efe~l 328 (657)
T PTZ00186 263 EFRKTSGIDLSKERMALQRVREAAEKAKCELSSAME--------------TEVNLPFITANADGAQHIQMHISRSKFEGI 328 (657)
T ss_pred HHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCc--------------eEEEEeeeccCCCCCcceEEEecHHHHHHH
Confidence 2 2222111 2345566665533211 111111 11 1222222222222
Q ss_pred -ccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCc
Q 017944 242 -EALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPE 320 (363)
Q Consensus 242 -E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~ 320 (363)
+.|+ ..+.+.+.+++..... ...-...|+|+||+|++|.+.+.+++.+.. . .....+
T Consensus 329 ~~~l~---------~r~~~~v~~~L~~a~~--~~~dId~VvLVGGssriP~V~~~l~~~fg~-----~--~~~~~n---- 386 (657)
T PTZ00186 329 TQRLI---------ERSIAPCKQCMKDAGV--ELKEINDVVLVGGMTRMPKVVEEVKKFFQK-----D--PFRGVN---- 386 (657)
T ss_pred HHHHH---------HHHHHHHHHHHHHcCC--ChhhCCEEEEECCcccChHHHHHHHHHhCC-----C--ccccCC----
Confidence 2222 1233444444443322 223357899999999999999999988811 1 112223
Q ss_pred CCcceeeeechhhhhcc
Q 017944 321 NLTLYSAWIGGAILAKV 337 (363)
Q Consensus 321 ~~~~~~~w~Gasi~a~l 337 (363)
|..++-.||+++|..
T Consensus 387 --PdeaVA~GAAi~a~~ 401 (657)
T PTZ00186 387 --PDEAVALGAATLGGV 401 (657)
T ss_pred --CchHHHHhHHHHHHH
Confidence 668899999999873
No 32
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.70 E-value=7.3e-16 Score=155.72 Aligned_cols=212 Identities=20% Similarity=0.226 Sum_probs=135.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCC-----ceEEEEecCCCceEEEEee--cCeec-
Q 017944 87 EGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI--EGAVQ- 158 (363)
Q Consensus 87 ~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~~- 158 (363)
-..++++.|.+++..+|+.+.+.+ +..|++.+.++++|.|||+++|. .+-+|+|+|+++++|+.+. +|...
T Consensus 174 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v 252 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATKDAG-KIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV 252 (663)
T ss_pred CceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence 356999999999999998776544 67899999999999999999874 3679999999999999874 55432
Q ss_pred ccceEEeeccHHHHHHHHHHHHhcc-----CCCcccc-------HHHHHHHHHHcccccCCHHHHHHhcccCCCceeECC
Q 017944 159 HIASRRFEVGGMDLTKLLAQELGKT-----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP 226 (363)
Q Consensus 159 ~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~-------~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp 226 (363)
........+||.++++.|.+++.++ +.+...+ ...++.+|+.++.-. ...+.+|
T Consensus 253 ~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~--------------~~~i~i~ 318 (663)
T PTZ00400 253 KATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKT--------------QTEINLP 318 (663)
T ss_pred EecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCC--------------ceEEEEE
Confidence 2222335799999999998876532 2222111 123555565543211 0111111
Q ss_pred ----C--C-cEEEEeceeccc---cccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHH
Q 017944 227 ----D--G-QVIRIGKERYTV---GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRF 296 (363)
Q Consensus 227 ----~--~-~~i~i~~~r~~~---~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL 296 (363)
| | ..+.+.-.|-.+ .+.+| ..+.+.|.+++.+... ...-...|+|+||+|++|++.++|
T Consensus 319 ~~~~d~~g~~~~~~~itR~efe~l~~~l~---------~~~~~~i~~~L~~a~~--~~~~i~~ViLvGGssriP~v~~~l 387 (663)
T PTZ00400 319 FITADQSGPKHLQIKLSRAKLEELTHDLL---------KKTIEPCEKCIKDAGV--KKDELNDVILVGGMTRMPKVSETV 387 (663)
T ss_pred eeccCCCCceEEEEEECHHHHHHHHHHHH---------HHHHHHHHHHHHHcCC--CHHHCcEEEEECCccCChHHHHHH
Confidence 1 1 122222222222 22222 2345555566655432 223358899999999999999999
Q ss_pred HhhhccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhcc
Q 017944 297 QKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 337 (363)
Q Consensus 297 ~~eL~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l 337 (363)
++.+.. + +....+ |..++-.||+++|..
T Consensus 388 ~~~f~~-----~--~~~~~n------pdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 388 KKIFGK-----E--PSKGVN------PDEAVAMGAAIQAGV 415 (663)
T ss_pred HHHhCC-----C--cccCCC------CccceeeccHHHHHh
Confidence 988811 1 122233 668899999999864
No 33
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.70 E-value=4.1e-16 Score=155.21 Aligned_cols=283 Identities=16% Similarity=0.160 Sum_probs=172.2
Q ss_pred cEEEEcCCCcEEEeecCCCCCCce--------ecccceeeccCCCccccCccc---ccC----Cce-----------e--
Q 017944 3 AAVVDAGSKLLKAGPAIPDQAPSM--------VIPSQMKRVLEDGSSSVDNST---LVE----DVT-----------V-- 54 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~~ge~~P~~--------~~ps~~~~~~~~~~~g~~~~~---~~~----~~~-----------~-- 54 (363)
.|-||+||.+..+++. .+..|.. .+||+++...++..+| +.+. .++ .+. .
T Consensus 21 viGIDlGTT~S~va~~-~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG-~~Ati~~~KrliG~~~~~~~~~~~~~~~~k~ 98 (595)
T PRK01433 21 AVGIDFGTTNSLIAIA-TNRKVKVIKSIDDKELIPTTIDFTSNNFTIG-NNKGLRSIKRLFGKTLKEILNTPALFSLVKD 98 (595)
T ss_pred EEEEEcCcccEEEEEE-eCCeeEEEECCCCCeecCeEEEEcCCCEEEC-chhhHHHHHHHhCCCchhhccchhhHhhhhh
Confidence 4569999999999998 5544442 3678877654556677 5430 000 000 0
Q ss_pred --------cccc-CCe-ecCHHHHHHHHHHHHh---hccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEE
Q 017944 55 --------DPVV-RGF-IRDWDAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYS 121 (363)
Q Consensus 55 --------~p~~-~g~-i~~~~~~~~i~~~~~~---~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~ 121 (363)
.++. .|. ....+....+++++-. ..++. .-..++++.|.+++..+|+.+.+. .+..|++.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~---~v~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~l 174 (595)
T PRK01433 99 YLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKT---NITKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRL 174 (595)
T ss_pred eeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCC---CcceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEE
Confidence 0111 111 2223444445555432 12321 235699999999999999776655 57789999999
Q ss_pred ecchhhhhccCCC-----ceEEEEecCCCceEEEEee--cCee-cccceEEeeccHHHHHHHHHHHHhccCCCccc---c
Q 017944 122 SEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGGMDLTKLLAQELGKTNPSVNL---S 190 (363)
Q Consensus 122 ~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~---~ 190 (363)
+++|.|||+++|. .+-+|+|+|+++++|+.+. +|.. +........+||+++++.|.+++..+. .... .
T Consensus 175 i~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~-~~~~~~~~ 253 (595)
T PRK01433 175 IAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKF-DLPNSIDT 253 (595)
T ss_pred ecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhc-CCCCCHHH
Confidence 9999999999874 3469999999999998874 4422 111122347999999999988876432 1111 1
Q ss_pred HHHHHHHHHHcccccCCHHHHHHhcccCCCceeECCCCcEEEEeceec-cccccccCCCCCCcccccHHHHHHHHHHcCC
Q 017944 191 LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERY-TVGEALFQPSILGLEAHGIVEQLVHTISTVS 269 (363)
Q Consensus 191 ~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~r~-~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~ 269 (363)
.+.+++.|+.++.-. .+.. ..+.++.+.| .+.+.+| ..+.+.|.+++....
T Consensus 254 ~~~~ekaK~~LS~~~----------------~~~~---~~~~itr~efe~l~~~l~---------~~~~~~i~~~L~~a~ 305 (595)
T PRK01433 254 LQLAKKAKETLTYKD----------------SFNN---DNISINKQTLEQLILPLV---------ERTINIAQECLEQAG 305 (595)
T ss_pred HHHHHHHHHhcCCCc----------------cccc---ceEEEcHHHHHHHHHHHH---------HHHHHHHHHHHhhcC
Confidence 234666666543210 1111 1344432222 1222232 224455555555443
Q ss_pred hhHHHHhhcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhcc
Q 017944 270 SENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 337 (363)
Q Consensus 270 ~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l 337 (363)
..=.+.|+|+||+|++|.+.+.|++.+. ..+....+ |..++-.||++.|..
T Consensus 306 ----~~~Id~ViLvGGssriP~v~~~l~~~f~-------~~~~~~~n------pdeaVA~GAAi~a~~ 356 (595)
T PRK01433 306 ----NPNIDGVILVGGATRIPLIKDELYKAFK-------VDILSDID------PDKAVVWGAALQAEN 356 (595)
T ss_pred ----cccCcEEEEECCcccChhHHHHHHHHhC-------CCceecCC------chHHHHHHHHHHHHH
Confidence 1124789999999999999999998871 12223333 668899999999874
No 34
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.70 E-value=5.1e-16 Score=156.97 Aligned_cols=294 Identities=16% Similarity=0.131 Sum_probs=173.3
Q ss_pred cEEEEcCCCcEEEeecCCCCCCce--------ecccceeecc-CCCccccCcccccC-----------------Cc----
Q 017944 3 AAVVDAGSKLLKAGPAIPDQAPSM--------VIPSQMKRVL-EDGSSSVDNSTLVE-----------------DV---- 52 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~~ge~~P~~--------~~ps~~~~~~-~~~~~g~~~~~~~~-----------------~~---- 52 (363)
.|-||+||.++++++. .+..|.+ .+||++.... ++.++| +.|.... .+
T Consensus 41 viGIDlGTt~s~va~~-~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG-~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 118 (673)
T PLN03184 41 VVGIDLGTTNSAVAAM-EGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVG-QIAKRQAVVNPENTFFSVKRFIGRKMSEVD 118 (673)
T ss_pred EEEEEeCcCcEEEEEE-ECCeEEEEECCCCCeecceEEEEcCCCCEEEC-HHHHHhhhhCchhhhHHHHHhhCCCcchhh
Confidence 4559999999999998 5555553 3577776632 345677 4431110 00
Q ss_pred ---eecccc----------------CCeecCHHHHHHHHHHHHhh---ccCCCCCCCceEEEEcCCCCCHHHHHHHHHHh
Q 017944 53 ---TVDPVV----------------RGFIRDWDAMEDLLHHVLYA---GLGWEEGNEGQILFTDPLCSPKAVREQLVQLM 110 (363)
Q Consensus 53 ---~~~p~~----------------~g~i~~~~~~~~i~~~~~~~---~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~l 110 (363)
..+|++ ...+...+....+++++... .++. .-..++++.|.+++..+|+.+.+.
T Consensus 119 ~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~---~v~~~VITVPa~f~~~qR~a~~~A- 194 (673)
T PLN03184 119 EESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLND---KVTKAVITVPAYFNDSQRTATKDA- 194 (673)
T ss_pred hhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC---CCCeEEEEECCCCCHHHHHHHHHH-
Confidence 001221 11223345555666665432 2321 235699999999999999776654
Q ss_pred hcccCCCeEEEecchhhhhccCCC-----ceEEEEecCCCceEEEEeecCee---cccceEEeeccHHHHHHHHHHHHhc
Q 017944 111 FETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEGAV---QHIASRRFEVGGMDLTKLLAQELGK 182 (363)
Q Consensus 111 fe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG~~---~~~~~~~~~~GG~~l~~~l~~~l~~ 182 (363)
.+..|+..+.++++|.|||+++|. ..-+|+|+|+++++|+.+.-+.. +..+.....+||+++++.|.+++.+
T Consensus 195 a~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~ 274 (673)
T PLN03184 195 GRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS 274 (673)
T ss_pred HHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHH
Confidence 477899999999999999998864 46799999999999988743321 1112223589999999999887653
Q ss_pred c-----CCCcccc-------HHHHHHHHHHcccccCCHHHHHHhcccCCCceeECC------CC-cEEEEeceecccccc
Q 017944 183 T-----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP------DG-QVIRIGKERYTVGEA 243 (363)
Q Consensus 183 ~-----~~~~~~~-------~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp------~~-~~i~i~~~r~~~~E~ 243 (363)
+ +.+...+ ...+|+.|+.++... ...+.+| +| ..+.+.-.|-.+.++
T Consensus 275 ~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~--------------~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l 340 (673)
T PLN03184 275 NFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLT--------------QTSISLPFITATADGPKHIDTTLTRAKFEEL 340 (673)
T ss_pred HHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCC--------------cceEEEEeeeccCCCCceEEEEECHHHHHHH
Confidence 2 1121111 224555565543211 1112221 11 223322222222221
Q ss_pred ccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCcCCc
Q 017944 244 LFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLT 323 (363)
Q Consensus 244 lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~~ 323 (363)
. .| -...+.+.|.+++.....+. .=...|+|+||+|++|.+.++|++.+.. .+. ...+ |
T Consensus 341 ~-~~-----l~~r~~~~i~~~L~~a~~~~--~dId~ViLvGGssriP~V~~~i~~~fg~-----~~~--~~~n------p 399 (673)
T PLN03184 341 C-SD-----LLDRCKTPVENALRDAKLSF--KDIDEVILVGGSTRIPAVQELVKKLTGK-----DPN--VTVN------P 399 (673)
T ss_pred H-HH-----HHHHHHHHHHHHHHHcCCCh--hHccEEEEECCccccHHHHHHHHHHhCC-----Ccc--cccC------c
Confidence 1 00 00224445555555543322 2248899999999999999999988811 111 1222 5
Q ss_pred ceeeeechhhhhcc
Q 017944 324 LYSAWIGGAILAKV 337 (363)
Q Consensus 324 ~~~~w~Gasi~a~l 337 (363)
..++-.||++.|..
T Consensus 400 deaVA~GAAi~aa~ 413 (673)
T PLN03184 400 DEVVALGAAVQAGV 413 (673)
T ss_pred chHHHHHHHHHHHH
Confidence 68888999998863
No 35
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.70 E-value=3.5e-16 Score=156.89 Aligned_cols=290 Identities=17% Similarity=0.149 Sum_probs=169.6
Q ss_pred cEEEEcCCCcEEEeecCCCCCCce--------ecccceeeccCCCccccCcccccC-----------------Cc-----
Q 017944 3 AAVVDAGSKLLKAGPAIPDQAPSM--------VIPSQMKRVLEDGSSSVDNSTLVE-----------------DV----- 52 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~~ge~~P~~--------~~ps~~~~~~~~~~~g~~~~~~~~-----------------~~----- 52 (363)
.|-||+||.++.+++. .+..|.. .+||+++...++..+| +.|.... .+
T Consensus 21 ~iGIDlGTt~s~va~~-~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG-~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 98 (616)
T PRK05183 21 AVGIDLGTTNSLVATV-RSGQAEVLPDEQGRVLLPSVVRYLEDGIEVG-YEARANAAQDPKNTISSVKRFMGRSLADIQQ 98 (616)
T ss_pred EEEEEeccccEEEEEE-ECCEEEEEEcCCCCeecCeEEEEcCCCEEEc-HHHHHhhHhCchhhHHHHHHHhCCCchhhhh
Confidence 3669999999999987 4544543 3788887655556777 5442110 00
Q ss_pred --eecccc--------------CCeecCHHHHHHHHHHHHhh---ccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcc
Q 017944 53 --TVDPVV--------------RGFIRDWDAMEDLLHHVLYA---GLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFET 113 (363)
Q Consensus 53 --~~~p~~--------------~g~i~~~~~~~~i~~~~~~~---~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~ 113 (363)
..+|+. .|.+...+....+++++... .++. .-..++++.|.+++..+|+.+.+. .+.
T Consensus 99 ~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~---~v~~~VITVPa~f~~~qR~a~~~A-a~~ 174 (616)
T PRK05183 99 RYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGG---ELDGAVITVPAYFDDAQRQATKDA-ARL 174 (616)
T ss_pred hhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCC---CcceEEEEECCCCCHHHHHHHHHH-HHH
Confidence 011221 12233334445555554321 2322 235699999999999999777555 577
Q ss_pred cCCCeEEEecchhhhhccCCC-----ceEEEEecCCCceEEEEee--cCee-cccceEEeeccHHHHHHHHHHHHhcc-C
Q 017944 114 FNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGGMDLTKLLAQELGKT-N 184 (363)
Q Consensus 114 ~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~GG~~l~~~l~~~l~~~-~ 184 (363)
.|++.+.++++|.|||++++. .+-+|+|+|+++++|+.+. +|.. +........+||.++++.|.+++.++ +
T Consensus 175 AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~ 254 (616)
T PRK05183 175 AGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAG 254 (616)
T ss_pred cCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcC
Confidence 899999999999999988763 3468999999999998874 3332 11222235799999999998887643 2
Q ss_pred CCccccHH-------HHHHHHHHcccccCCHHHHHHhcccCCCceeECCCCcEEEEecee-ccccccccCCCCCCccccc
Q 017944 185 PSVNLSLY-------DVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKER-YTVGEALFQPSILGLEAHG 256 (363)
Q Consensus 185 ~~~~~~~~-------~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~r-~~~~E~lF~p~~~~~~~~~ 256 (363)
.+...+.. .++..|+.++. .....+.+++-.. .++.+. ..+.+.++ ..
T Consensus 255 ~~~~~~~~~~~~L~~~ae~aK~~LS~--------------~~~~~i~i~~~~~-~itr~efe~l~~~l~---------~~ 310 (616)
T PRK05183 255 LSPRLDPEDQRLLLDAARAAKEALSD--------------ADSVEVSVALWQG-EITREQFNALIAPLV---------KR 310 (616)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCC--------------CceEEEEEecCCC-eEcHHHHHHHHHHHH---------HH
Confidence 22212222 23444444321 1111222221100 121111 11111111 22
Q ss_pred HHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhc
Q 017944 257 IVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 336 (363)
Q Consensus 257 l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~ 336 (363)
+.+.+.+++..... ...-...|+|+||+|++|.+.++|++.+.. .+....+ |..++-.||+++|.
T Consensus 311 ~~~~i~~~L~~a~~--~~~~i~~ViLvGGssriP~v~~~l~~~fg~-------~~~~~~n------pdeaVA~GAAi~a~ 375 (616)
T PRK05183 311 TLLACRRALRDAGV--EADEVKEVVMVGGSTRVPLVREAVGEFFGR-------TPLTSID------PDKVVAIGAAIQAD 375 (616)
T ss_pred HHHHHHHHHHHcCC--CcccCCEEEEECCcccChHHHHHHHHHhcc-------CcCcCCC------chHHHHHHHHHHHH
Confidence 44444455444321 112247899999999999999999987711 1122233 66889999999986
Q ss_pred c
Q 017944 337 V 337 (363)
Q Consensus 337 l 337 (363)
.
T Consensus 376 ~ 376 (616)
T PRK05183 376 I 376 (616)
T ss_pred H
Confidence 3
No 36
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.69 E-value=5.8e-16 Score=155.64 Aligned_cols=294 Identities=17% Similarity=0.160 Sum_probs=172.8
Q ss_pred cEEEEcCCCcEEEeecCCCCCCce--------ecccceeeccC-CCccccCcccccC-----C----c------------
Q 017944 3 AAVVDAGSKLLKAGPAIPDQAPSM--------VIPSQMKRVLE-DGSSSVDNSTLVE-----D----V------------ 52 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~~ge~~P~~--------~~ps~~~~~~~-~~~~g~~~~~~~~-----~----~------------ 52 (363)
.|-||+||.++++++. .+..|.+ .+||+++...+ +..+| +.|.... . +
T Consensus 2 viGIDlGtt~s~va~~-~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG-~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~ 79 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVM-EGGEPVVIPNAEGARTTPSVVAFTKNGERLVG-QPAKRQAVTNPENTIYSIKRFMGRRFDEVT 79 (595)
T ss_pred EEEEEeCcccEEEEEE-ECCEEEEEECCCCCcccCeEEEEeCCCCEEEC-HHHHHhhhhCchhhhHHHHHHhCCCchHHH
Confidence 4679999999999998 5555553 36788776433 56777 5552111 0 0
Q ss_pred ---eecccc----C--------Cee-cCHHHHHHHHHHHHh---hccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcc
Q 017944 53 ---TVDPVV----R--------GFI-RDWDAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFET 113 (363)
Q Consensus 53 ---~~~p~~----~--------g~i-~~~~~~~~i~~~~~~---~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~ 113 (363)
..+|++ + |.. .-.+....+++++.. ..++. .-..++++.|.+++..+|+.+.+. .+.
T Consensus 80 ~~~~~~~~~v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~---~v~~~VItVPa~f~~~qR~a~~~A-a~~ 155 (595)
T TIGR02350 80 EEAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGE---KVTEAVITVPAYFNDAQRQATKDA-GKI 155 (595)
T ss_pred HHhhcCCeeEEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCC---CCCeEEEEECCCCCHHHHHHHHHH-HHH
Confidence 011221 1 111 112333444444432 22322 224699999999999999877664 467
Q ss_pred cCCCeEEEecchhhhhccCCC------ceEEEEecCCCceEEEEee--cCee-cccceEEeeccHHHHHHHHHHHHhcc-
Q 017944 114 FNISGFYSSEQAVLSLYAVGR------ISGCTVDIGHGKIDIAPVI--EGAV-QHIASRRFEVGGMDLTKLLAQELGKT- 183 (363)
Q Consensus 114 ~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~GG~~l~~~l~~~l~~~- 183 (363)
.|++.+.++++|.|||+++|. .+-+|+|+|+++++++.+. +|.. +........+||.++++.|.+++.++
T Consensus 156 AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~ 235 (595)
T TIGR02350 156 AGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEF 235 (595)
T ss_pred cCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHH
Confidence 899999999999999998763 4569999999999998874 2322 11222235799999999998776532
Q ss_pred ----CCCcccc-------HHHHHHHHHHcccccCCHHHHHHhcccCCCceeECC----C--C-cEEEEeceecccccccc
Q 017944 184 ----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLP----D--G-QVIRIGKERYTVGEALF 245 (363)
Q Consensus 184 ----~~~~~~~-------~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp----~--~-~~i~i~~~r~~~~E~lF 245 (363)
+.+...+ ...++++|+.++... ...+.+| | | ..+.+.-.|-.+.+ ++
T Consensus 236 ~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~--------------~~~i~i~~~~~~~~g~~~~~~~itr~~fe~-l~ 300 (595)
T TIGR02350 236 KKEEGIDLSKDKMALQRLKEAAEKAKIELSSVL--------------STEINLPFITADASGPKHLEMTLTRAKFEE-LT 300 (595)
T ss_pred HHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCC--------------ceEEEeeecccCCCCCeeEEEEEeHHHHHH-HH
Confidence 2222111 134556666543211 0111111 1 1 22222222222211 11
Q ss_pred CCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCcCCcce
Q 017944 246 QPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLY 325 (363)
Q Consensus 246 ~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~~~~ 325 (363)
.|- ...+.+.|.+++..... ...-...|+|+||+|++|++.+.+++.+. ..+....+ |..
T Consensus 301 ~~l-----~~~~~~~i~~~l~~a~~--~~~~i~~V~LvGGssriP~v~~~i~~~f~-------~~~~~~~~------pde 360 (595)
T TIGR02350 301 ADL-----VERTKEPVRQALKDAGL--SASDIDEVILVGGSTRIPAVQELVKDFFG-------KEPNKSVN------PDE 360 (595)
T ss_pred HHH-----HHHHHHHHHHHHHHcCC--CHhHCcEEEEECCcccChHHHHHHHHHhC-------CcccCCcC------cHH
Confidence 110 02345555555555432 12235789999999999999999998771 12223333 668
Q ss_pred eeeechhhhhcc
Q 017944 326 SAWIGGAILAKV 337 (363)
Q Consensus 326 ~~w~Gasi~a~l 337 (363)
++..||+++|..
T Consensus 361 ava~GAa~~aa~ 372 (595)
T TIGR02350 361 VVAIGAAIQGGV 372 (595)
T ss_pred HHHHHHHHHHHH
Confidence 899999999864
No 37
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.67 E-value=2.8e-15 Score=151.56 Aligned_cols=211 Identities=14% Similarity=0.183 Sum_probs=134.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCC-------ceEEEEecCCCceEEEEee--cCeec
Q 017944 88 GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-------ISGCTVDIGHGKIDIAPVI--EGAVQ 158 (363)
Q Consensus 88 ~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-------~tglVVDiG~~~t~v~pv~--dG~~~ 158 (363)
..++++.|.+++..+|+.+.+ +.+..|+..+.++++|.|||+++|. .+-+|+|+|+++++|+.+. +|...
T Consensus 141 ~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~ 219 (653)
T PTZ00009 141 KDAVVTVPAYFNDSQRQATKD-AGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFE 219 (653)
T ss_pred ceeEEEeCCCCCHHHHHHHHH-HHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEE
Confidence 569999999999999877665 4477899999999999999998763 4679999999999998874 44322
Q ss_pred -ccceEEeeccHHHHHHHHHHHHhcc------CCCcccc-------HHHHHHHHHHcccccCCHHHHHHhcccCCCceeE
Q 017944 159 -HIASRRFEVGGMDLTKLLAQELGKT------NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHT 224 (363)
Q Consensus 159 -~~~~~~~~~GG~~l~~~l~~~l~~~------~~~~~~~-------~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~ 224 (363)
........+||+++++.|.+++.++ +.+...+ ...++++|+.++.. ....+.
T Consensus 220 v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~--------------~~~~i~ 285 (653)
T PTZ00009 220 VKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSS--------------TQATIE 285 (653)
T ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCC--------------ceEEEE
Confidence 1112235799999999998776532 1111111 22455555554311 111222
Q ss_pred CC---CCcEEEEeceeccc---cccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHh
Q 017944 225 LP---DGQVIRIGKERYTV---GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQK 298 (363)
Q Consensus 225 lp---~~~~i~i~~~r~~~---~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~ 298 (363)
++ ++..+.+.-.|-.+ .+.+| ..+.+.|.+++.....+. .-.+.|+|+||+|++|.+.++|++
T Consensus 286 i~~~~~~~d~~~~itR~~fe~l~~~l~---------~~~~~~i~~~L~~a~~~~--~~i~~ViLvGGssriP~v~~~i~~ 354 (653)
T PTZ00009 286 IDSLFEGIDYNVTISRARFEELCGDYF---------RNTLQPVEKVLKDAGMDK--RSVHEVVLVGGSTRIPKVQSLIKD 354 (653)
T ss_pred EEeccCCceEEEEECHHHHHHHHHHHH---------HHHHHHHHHHHHHcCCCH--HHCcEEEEECCCCCChhHHHHHHH
Confidence 22 33333332223222 22222 234455666666554322 235789999999999999999998
Q ss_pred hh-ccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhcc
Q 017944 299 EA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 337 (363)
Q Consensus 299 eL-~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l 337 (363)
.+ .. .+....+ |..++-.||+++|..
T Consensus 355 ~f~~~-------~~~~~~n------pdeaVA~GAa~~aa~ 381 (653)
T PTZ00009 355 FFNGK-------EPCKSIN------PDEAVAYGAAVQAAI 381 (653)
T ss_pred HhCCC-------CCCCCCC------cchHHhhhhhhhHHH
Confidence 77 21 1222223 568899999998763
No 38
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.56 E-value=3.1e-13 Score=128.36 Aligned_cols=174 Identities=22% Similarity=0.312 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCC-----ceEEEEecCCCceEEEEeecCeecccceEEeeccHHHHH
Q 017944 99 PKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLT 173 (363)
Q Consensus 99 ~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~ 173 (363)
++...+.+.+ +++..|..-+.+..+|+|+++++.. ...+|||+|+++|+++.+.+|.+.. ...+++||++++
T Consensus 156 ~~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHH
Confidence 3444444444 4477899999999999999988642 3469999999999999999998775 356899999999
Q ss_pred HHHHHHHhccCCCccccHHHHHHHHHHcccccCCHHHHHHhcccCCCceeECCC---CcEEEEeceeccccccccCCCCC
Q 017944 174 KLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPD---GQVIRIGKERYTVGEALFQPSIL 250 (363)
Q Consensus 174 ~~l~~~l~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp~---~~~i~i~~~r~~~~E~lF~p~~~ 250 (363)
+.+.+.+. .+.+.+|++|.+++....+... ....+.++. +....+.. ..+.+++- |
T Consensus 233 ~~i~~~l~-------~~~~~AE~lK~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~is~--~~l~~ii~-~--- 291 (371)
T TIGR01174 233 KDIAKALR-------TPLEEAERIKIKYGCASIPLEG--------PDENIEIPSVGERPPRSLSR--KELAEIIE-A--- 291 (371)
T ss_pred HHHHHHhC-------CCHHHHHHHHHHeeEecccCCC--------CCCEEEeccCCCCCCeEEcH--HHHHHHHH-H---
Confidence 99988765 6788999999998876432100 001122221 11222211 11111110 0
Q ss_pred CcccccHHHHHH-HHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh
Q 017944 251 GLEAHGIVEQLV-HTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 300 (363)
Q Consensus 251 ~~~~~~l~~~I~-~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL 300 (363)
....+.+.|. +.+++.+.+ ..+-+.|+||||+|++||+.+++++.+
T Consensus 292 --~~~ei~~~i~~~~L~~~~~~--~~i~~gIvLtGG~S~ipgi~~~l~~~~ 338 (371)
T TIGR01174 292 --RAEEILEIVKQKELRKSGFK--EELNGGIVLTGGGAQLEGIVELAEKVF 338 (371)
T ss_pred --HHHHHHHHHHHHHHHhcCCc--ccCCCEEEEeChHHcccCHHHHHHHHh
Confidence 0123444554 555554332 222234999999999999999999999
No 39
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.54 E-value=7e-14 Score=141.36 Aligned_cols=215 Identities=20% Similarity=0.257 Sum_probs=131.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCC------ceEEEEecCCCceEEEEee--cCeec-
Q 017944 88 GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR------ISGCTVDIGHGKIDIAPVI--EGAVQ- 158 (363)
Q Consensus 88 ~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~v~pv~--dG~~~- 158 (363)
..++++.|..++..+|+.+.+.+ +..|++.+.++++|.|||++++. .+-+|+|+|+++++|+.+. +|...
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v 214 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV 214 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred ccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence 46999999999999997776655 66899999999999999987753 3669999999999998774 45332
Q ss_pred ccceEEeeccHHHHHHHHHHHHhcc-----CCCcccc-------HHHHHHHHHHcccccCCHHHHHHhcccCCCceeE--
Q 017944 159 HIASRRFEVGGMDLTKLLAQELGKT-----NPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHT-- 224 (363)
Q Consensus 159 ~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~-------~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~-- 224 (363)
........+||.++++.|.+++.++ +.+...+ ...++.+|+.+..... ....+.
T Consensus 215 ~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~------------~~~~~~~~ 282 (602)
T PF00012_consen 215 LATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDN------------TEITISIE 282 (602)
T ss_dssp EEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSS------------SEEEEEEE
T ss_pred cccccccccccceecceeeccccccccccccccccccccccccccccccccccccccccc------------cccccccc
Confidence 2223345799999999998887542 2222111 1234455555432100 011111
Q ss_pred --CCCCcEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhhcc
Q 017944 225 --LPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGL 302 (363)
Q Consensus 225 --lp~~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL~~ 302 (363)
.+++..+.+.-.|-.+.++ +.|- ...+.+.|.+++...... ..=...|+|+||+|++|.+.+.|++.+.
T Consensus 283 ~~~~~~~~~~~~itr~~fe~l-~~~~-----~~~~~~~i~~~l~~~~~~--~~~i~~V~lvGG~sr~p~v~~~l~~~f~- 353 (602)
T PF00012_consen 283 SLYDDGEDFSITITREEFEEL-CEPL-----LERIIEPIEKALKDAGLK--KEDIDSVLLVGGSSRIPYVQEALKELFG- 353 (602)
T ss_dssp EEETTTEEEEEEEEHHHHHHH-THHH-----HHHTHHHHHHHHHHTT----GGGESEEEEESGGGGSHHHHHHHHHHTT-
T ss_pred cccccccccccccccceeccc-cccc-----cccccccccccccccccc--ccccceeEEecCcccchhhhhhhhhccc-
Confidence 1224444443333332222 1110 123566666666655322 2224679999999999999999988871
Q ss_pred CCCCcceEEeCCCCCCCcCCcceeeeechhhhhc
Q 017944 303 CSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 336 (363)
Q Consensus 303 ~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~ 336 (363)
-.+....+ |..++-.||+++|.
T Consensus 354 ------~~~~~~~~------p~~aVA~GAa~~a~ 375 (602)
T PF00012_consen 354 ------KKISKSVN------PDEAVARGAALYAA 375 (602)
T ss_dssp ------SEEB-SS-------TTTHHHHHHHHHHH
T ss_pred ------cccccccc------cccccccccccchh
Confidence 13334344 66889999999986
No 40
>PRK11678 putative chaperone; Provisional
Probab=99.53 E-value=1e-12 Score=126.71 Aligned_cols=88 Identities=20% Similarity=0.217 Sum_probs=67.1
Q ss_pred ceEEEEcCCCCC-----HHHHHH--HHHHhhcccCCCeEEEecchhhhhccCCC-----ceEEEEecCCCceEEEEeecC
Q 017944 88 GQILFTDPLCSP-----KAVREQ--LVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEG 155 (363)
Q Consensus 88 ~~v~l~~~~~~~-----~~~r~~--l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG 155 (363)
..+|++.|..+. ..+|.. ...-..+..|++.+.++++|.||++++|. .+-+|+|+|+++++++.+-=+
T Consensus 150 ~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~ 229 (450)
T PRK11678 150 TQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMG 229 (450)
T ss_pred CcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEec
Confidence 569999999876 556543 24555678899999999999999999873 567999999999999887421
Q ss_pred -----------eecccceEEeeccHHHHHHHHH
Q 017944 156 -----------AVQHIASRRFEVGGMDLTKLLA 177 (363)
Q Consensus 156 -----------~~~~~~~~~~~~GG~~l~~~l~ 177 (363)
.++-++. ..+||+++++.|.
T Consensus 230 ~~~~~~~~r~~~vla~~G--~~lGG~DfD~~L~ 260 (450)
T PRK11678 230 PSWRGRADRSASLLGHSG--QRIGGNDLDIALA 260 (450)
T ss_pred CcccccCCcceeEEecCC--CCCChHHHHHHHH
Confidence 1222221 3699999999985
No 41
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.49 E-value=2.6e-13 Score=130.60 Aligned_cols=207 Identities=22% Similarity=0.289 Sum_probs=136.8
Q ss_pred HHHHHHHHHHhhcccCCCeEEEecchhhhhccCCC-----ceEEEEecCCCceEEEEeecCeecccceEEeeccHHHHHH
Q 017944 100 KAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-----ISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTK 174 (363)
Q Consensus 100 ~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~ 174 (363)
....+.+.+ +++..|..-..++.+|+|++++... ...+|||+|+++|+++.+.+|.++.. ..+++||+++++
T Consensus 165 ~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~~--~~i~~GG~~it~ 241 (420)
T PRK09472 165 NDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHT--KVIPYAGNVVTS 241 (420)
T ss_pred hHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEEE--eeeechHHHHHH
Confidence 344445555 5688899999999999999998753 34799999999999999999998854 568999999999
Q ss_pred HHHHHHhccCCCccccHHHHHHHHHHcccccCCHHHHHHhcccCCCceeECCC--Cc-EEEEeceeccccccccCCCCCC
Q 017944 175 LLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPD--GQ-VIRIGKERYTVGEALFQPSILG 251 (363)
Q Consensus 175 ~l~~~l~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp~--~~-~i~i~~~r~~~~E~lF~p~~~~ 251 (363)
.|...+. ++.+.+|++|.+++....+..+ ....+++++ +. ...+. +..+.+++-.
T Consensus 242 dIa~~l~-------i~~~~AE~lK~~~g~~~~~~~~--------~~~~i~v~~~~~~~~~~i~--~~~l~~ii~~----- 299 (420)
T PRK09472 242 DIAYAFG-------TPPSDAEAIKVRHGCALGSIVG--------KDESVEVPSVGGRPPRSLQ--RQTLAEVIEP----- 299 (420)
T ss_pred HHHHHhC-------cCHHHHHHHHHhcceeccccCC--------CCceeEecCCCCCCCeEEc--HHHHHHHHHH-----
Confidence 9998776 6889999999998765433110 001122221 11 11111 1222222211
Q ss_pred cccccHHHHHHHHHHcCChhHHHH-----hhcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCC----cCC
Q 017944 252 LEAHGIVEQLVHTISTVSSENHRQ-----LLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMP----ENL 322 (363)
Q Consensus 252 ~~~~~l~~~I~~~i~~~~~~~r~~-----l~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~----~~~ 322 (363)
....|.+.|.+.+..++.+++.. +.+.||||||+|+|||+.+.+++.+. .++++..+..... ...
T Consensus 300 -r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~-----~~vri~~P~~~~g~~~~~~~ 373 (420)
T PRK09472 300 -RYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH-----TQVRIGAPLNITGLTDYAQE 373 (420)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC-----CCeEEeCCcccCCChhhcCC
Confidence 01234556666666666655433 44569999999999999999999882 2334333211000 123
Q ss_pred cceeeeechhhhhcc
Q 017944 323 TLYSAWIGGAILAKV 337 (363)
Q Consensus 323 ~~~~~w~Gasi~a~l 337 (363)
|.|++-.|..+++.-
T Consensus 374 P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 374 PYYSTAVGLLHYGKE 388 (420)
T ss_pred cHHHHHHHHHHHhhh
Confidence 789999999888763
No 42
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4.5e-12 Score=125.84 Aligned_cols=291 Identities=18% Similarity=0.145 Sum_probs=166.8
Q ss_pred cEEEEcCCCcEEEeecCCCC-CCcee--------cccceeeccC-CCccccCcccc-----cCC--ce-ecccc------
Q 017944 3 AAVVDAGSKLLKAGPAIPDQ-APSMV--------IPSQMKRVLE-DGSSSVDNSTL-----VED--VT-VDPVV------ 58 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~~ge~-~P~~~--------~ps~~~~~~~-~~~~g~~~~~~-----~~~--~~-~~p~~------ 58 (363)
+|-||+||.++.+.+. ... .|.++ +||++....+ +..+| ..|.. +.+ +. ++.+.
T Consensus 7 ~iGIDlGTTNS~vA~~-~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG-~~A~~q~~~~p~~t~~~~kr~~G~~~~~~ 84 (579)
T COG0443 7 AIGIDLGTTNSVVAVM-RGGGLPKVIENAEGERLTPSVVAFSKNGEVLVG-QAAKRQAVDNPENTIFSIKRKIGRGSNGL 84 (579)
T ss_pred EEEEEcCCCcEEEEEE-eCCCCceEecCCCCCcccceEEEECCCCCEEec-HHHHHHhhhCCcceEEEEehhcCCCCCCC
Confidence 5779999999999999 443 35433 6788877544 47788 54411 111 11 12222
Q ss_pred ------CCeecC-HHHHHHHHHHHHh---hccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhh
Q 017944 59 ------RGFIRD-WDAMEDLLHHVLY---AGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLS 128 (363)
Q Consensus 59 ------~g~i~~-~~~~~~i~~~~~~---~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a 128 (363)
.|.... -+....++.++-. ..+. . .-..++++.|.++...+|..+. -.....|++.+.++++|.||
T Consensus 85 ~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg--~-~v~~~VItVPayF~d~qR~at~-~A~~iaGl~vlrlinEPtAA 160 (579)
T COG0443 85 KISVEVDGKKYTPEEISAMILTKLKEDAEAYLG--E-KVTDAVITVPAYFNDAQRQATK-DAARIAGLNVLRLINEPTAA 160 (579)
T ss_pred cceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhC--C-CcceEEEEeCCCCCHHHHHHHH-HHHHHcCCCeEEEecchHHH
Confidence 111112 2222333433221 1222 2 3467999999999999986555 44567899999999999999
Q ss_pred hccCCC-----ceEEEEecCCCceEEEEeec--Ce-ecccceEEeeccHHHHHHHHHHHHhcc----C-CCccccH----
Q 017944 129 LYAVGR-----ISGCTVDIGHGKIDIAPVIE--GA-VQHIASRRFEVGGMDLTKLLAQELGKT----N-PSVNLSL---- 191 (363)
Q Consensus 129 ~~~~g~-----~tglVVDiG~~~t~v~pv~d--G~-~~~~~~~~~~~GG~~l~~~l~~~l~~~----~-~~~~~~~---- 191 (363)
||++|. ..-+|+|+|+++++++.|-= |. .+........+||+++++.|...+..+ + .++..+.
T Consensus 161 Alayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~~ 240 (579)
T COG0443 161 ALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQ 240 (579)
T ss_pred HHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHHH
Confidence 999984 46799999999999998844 31 223334456899999999887765432 2 2332222
Q ss_pred ---HHHHHHHHHcccccCCHHHHHHhcccCCCceeECCCCc-EEEEeceeccccccccCCCCCCcccccHHHHHHHHHHc
Q 017944 192 ---YDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQ-VIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTIST 267 (363)
Q Consensus 192 ---~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp~~~-~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~ 267 (363)
+.++..|+.++...... ..+..-++. .+...-.|-.+.+. +.+++.+++..
T Consensus 241 rL~~~ae~aK~~LS~~~~~~------------i~~~~~~~~~~~~~~ltR~~~E~l-------------~~dll~r~~~~ 295 (579)
T COG0443 241 RLREAAEKAKIELSSATQTS------------INLPSIGGDIDLLKELTRAKFEEL-------------ILDLLERTIEP 295 (579)
T ss_pred HHHHHHHHHHHHcccccccc------------cchhhccccchhhhhhhHHHHHHH-------------HHHHHHHHHHH
Confidence 34555555543222110 011111111 01111111111111 33333333333
Q ss_pred CCh-----hHHHHhhcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhcc
Q 017944 268 VSS-----ENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 337 (363)
Q Consensus 268 ~~~-----~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l 337 (363)
+.. .+...=..-|+++||+++||=+.+.+.+.+. -......+ |..++-.||.+.|..
T Consensus 296 ~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-------~~~~~~in------pdeava~GAa~qa~~ 357 (579)
T COG0443 296 VEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-------KEPEKSIN------PDEAVALGAAIQAAV 357 (579)
T ss_pred HHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-------ccccccCC------ccHHHHHHHHHHHHh
Confidence 321 1222334669999999999999988887772 11222333 667788888887764
No 43
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.33 E-value=3.8e-12 Score=120.00 Aligned_cols=210 Identities=20% Similarity=0.219 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhhcccCCCeEEEecchhhhhccCC-----CceEEEEecCCCceEEEEeecCeecccceEEeeccHHHHHH
Q 017944 100 KAVREQLVQLMFETFNISGFYSSEQAVLSLYAVG-----RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTK 174 (363)
Q Consensus 100 ~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g-----~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~ 174 (363)
...-+.+.+ +.++.+..-..++-+|+|++.+.= ...+++||+|+++|+|+.+.+|.+.... .+|+||+++|+
T Consensus 164 ~~~~~Nl~k-~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~~--~ipvgG~~vT~ 240 (418)
T COG0849 164 KNILENLEK-CVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYTG--VIPVGGDHVTK 240 (418)
T ss_pred hHHHHHHHH-HHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEEe--eEeeCccHHHH
Confidence 333434443 347788888889999999998763 3578999999999999999999999764 48999999999
Q ss_pred HHHHHHhccCCCccccHHHHHHHHHHcccccCCHHHHHHhcccCCCceeECCC-CcEEEEeceeccccccccCCCCCCcc
Q 017944 175 LLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPD-GQVIRIGKERYTVGEALFQPSILGLE 253 (363)
Q Consensus 175 ~l~~~l~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp~-~~~i~i~~~r~~~~E~lF~p~~~~~~ 253 (363)
.+.+.|. .+.+.+|++|.+++....+..+. ...+..|. |......-.+..+.++.= ..
T Consensus 241 DIa~~l~-------t~~~~AE~iK~~~g~a~~~~~~~--------~~~i~v~~vg~~~~~~~t~~~ls~II~------aR 299 (418)
T COG0849 241 DIAKGLK-------TPFEEAERIKIKYGSALISLADD--------EETIEVPSVGSDIPRQVTRSELSEIIE------AR 299 (418)
T ss_pred HHHHHhC-------CCHHHHHHHHHHcCccccCcCCC--------cceEecccCCCcccchhhHHHHHHHHH------hh
Confidence 9999998 89999999999998776542110 01122221 111010111111111110 01
Q ss_pred cccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh-ccCCCCcceEEeCCCCCCCcCCcceeeeechh
Q 017944 254 AHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGA 332 (363)
Q Consensus 254 ~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL-~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gas 332 (363)
...+.+++...+++.-.. ..+.+.|+||||+++|||+.+--++-+ .-..-..+..+.-..++. . .|.|++-+|.-
T Consensus 300 ~~Ei~~lV~~~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~-~-~p~fs~avGl~ 375 (418)
T COG0849 300 VEEILELVKAELRKSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIA-R-NPAFSTAVGLL 375 (418)
T ss_pred HHHHHHHHHHHHHHcCcc--ccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhc-c-CchhhhhHHHH
Confidence 122444455555554322 556688999999999999998777766 211000011111101111 1 17899999999
Q ss_pred hhhcc
Q 017944 333 ILAKV 337 (363)
Q Consensus 333 i~a~l 337 (363)
.++.+
T Consensus 376 ~~~~~ 380 (418)
T COG0849 376 LYGAL 380 (418)
T ss_pred HHHhh
Confidence 98875
No 44
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.31 E-value=5.1e-11 Score=111.54 Aligned_cols=172 Identities=17% Similarity=0.234 Sum_probs=108.0
Q ss_pred cCCCeEEEecchhhhhccCC-------------CceEEEEecCCCceEEEEeecCeecccceEEeeccHHHHHHHHHHHH
Q 017944 114 FNISGFYSSEQAVLSLYAVG-------------RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQEL 180 (363)
Q Consensus 114 ~~~~~v~~~~~~~~a~~~~g-------------~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l 180 (363)
..+..|.+++|+++|++... ....+|||+|+++|+++.+.++.+.......++.|..++.+.+.+.+
T Consensus 151 I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i 230 (344)
T PRK13917 151 INVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHI 230 (344)
T ss_pred EEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHH
Confidence 45678999999999986542 12459999999999999999999988877778999999999999999
Q ss_pred hccCCCccccHHHHHHHHHHcccccCCHHHHHHhcccCCCceeECCCCcEEEEeceeccccccccCCCCCCcccccHHHH
Q 017944 181 GKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQ 260 (363)
Q Consensus 181 ~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~ 260 (363)
..+.....++.+.++++-+. + .+.+..+..+++..+...+.+ .+.+.
T Consensus 231 ~~~~~~~~~~~~~ie~~l~~-g-------------------~i~~~~~~~id~~~~~~~~~~-------------~~~~~ 277 (344)
T PRK13917 231 SKKEEGASITPYMLEKGLEY-G-------------------ACKLNQKTVIDFKDEFYKEQD-------------SVIDE 277 (344)
T ss_pred HhhCCCCCCCHHHHHHHHHc-C-------------------cEEeCCCceEehHHHHHHHHH-------------HHHHH
Confidence 64444334555555555432 1 122222234443322111111 12222
Q ss_pred HHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhc
Q 017944 261 LVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 336 (363)
Q Consensus 261 I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~ 336 (363)
+.+.++..=.+ ..=+++|+|+||+|.+ +.+.|++.+ | ++.+. ++ |+++.-.|.-.++.
T Consensus 278 i~~~i~~~~~~--~~~~d~IiL~GGGA~l--l~~~lk~~f---~---~~~~~--~~------p~~ANa~G~~~~g~ 335 (344)
T PRK13917 278 VMSGFEIAVGN--INSFDRVIVTGGGANI--FFDSLSHWY---S---DVEKA--DE------SQFANVRGYYKYGE 335 (344)
T ss_pred HHHHHHHHhcc--cCCCCEEEEECCcHHH--HHHHHHHHc---C---CeEEc--CC------hHHHHHHHHHHHHH
Confidence 22222211001 1125679999999987 666677665 2 23333 33 67888888888876
No 45
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.23 E-value=5.1e-12 Score=104.52 Aligned_cols=216 Identities=22% Similarity=0.256 Sum_probs=141.0
Q ss_pred EEEEcCCCcEEEeecCCCCCCceecccceeeccCCCccccCcccccCCceeccccCCeecCHHHHHHHHHHH---Hhhcc
Q 017944 4 AVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHV---LYAGL 80 (363)
Q Consensus 4 vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~~~~~~~~i~~~~---~~~~l 80 (363)
|-+|+|++.+..-.-..+..|....- +. -.-.++|.+.|+-..-++.+.. +.++|
T Consensus 32 vGVDLGT~~iV~~vlD~d~~Pvag~~--------------~~--------advVRDGiVvdf~eaveiVrrlkd~lEk~l 89 (277)
T COG4820 32 VGVDLGTCDIVSMVLDRDGQPVAGCL--------------DW--------ADVVRDGIVVDFFEAVEIVRRLKDTLEKQL 89 (277)
T ss_pred EEeecccceEEEEEEcCCCCeEEEEe--------------hh--------hhhhccceEEehhhHHHHHHHHHHHHHHhh
Confidence 34788888887655534445543210 11 1234678777764443343332 34556
Q ss_pred CCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCCceEEEEecCCCceEEEEeecCeeccc
Q 017944 81 GWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (363)
Q Consensus 81 ~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~ 160 (363)
++.. .. ---..||-...... ++.-.+.|+.|...++.+++|.|+++-.+..+|.|||+|+++|-|+.+-+|.++..
T Consensus 90 Gi~~-th--a~taiPPGt~~~~~-ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~ 165 (277)
T COG4820 90 GIRF-TH--AATAIPPGTEQGDP-RISINVIESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYS 165 (277)
T ss_pred CeEe-ee--ccccCCCCccCCCc-eEEEEeecccCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEe
Confidence 5543 11 11222333211111 23334568899999999999999999999999999999999999999999999987
Q ss_pred ceEEeeccHHHHHHHHHHHHhccCCCccccHHHHHHHHHHcccccCCHHHHHHhcccCCCceeECCCCcEEEEeceeccc
Q 017944 161 ASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTV 240 (363)
Q Consensus 161 ~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~r~~~ 240 (363)
+- -+.||.+++-.|.... .++.+.+|++|...- +++ |.|..
T Consensus 166 AD--EpTGGtHmtLvlAG~y-------gi~~EeAE~~Kr~~k------------------------~~~------Eif~~ 206 (277)
T COG4820 166 AD--EPTGGTHMTLVLAGNY-------GISLEEAEQYKRGHK------------------------KGE------EIFPV 206 (277)
T ss_pred cc--CCCCceeEEEEEeccc-------CcCHhHHHHhhhccc------------------------cch------hcccc
Confidence 65 5899988776554332 378889999987520 001 11111
Q ss_pred cccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh
Q 017944 241 GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 300 (363)
Q Consensus 241 ~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL 300 (363)
.-+.+ ..+.+++.+.|...+. ..+.|+||.++.||+++-++++|
T Consensus 207 v~PV~---------eKMAeIv~~hie~~~i-------~dl~lvGGac~~~g~e~~Fe~~l 250 (277)
T COG4820 207 VKPVY---------EKMAEIVARHIEGQGI-------TDLWLVGGACMQPGVEELFEKQL 250 (277)
T ss_pred hhHHH---------HHHHHHHHHHhccCCC-------cceEEecccccCccHHHHHHHHh
Confidence 11111 3477777877777665 45789999999999999999999
No 46
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.22 E-value=2.5e-09 Score=100.86 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHhhcccCCCeEEEecchhhhhccC----------C-Cc-eEEEEecCCCceEEEEeecCeecccceEEee
Q 017944 99 PKAVREQLVQLMFETFNISGFYSSEQAVLSLYAV----------G-RI-SGCTVDIGHGKIDIAPVIEGAVQHIASRRFE 166 (363)
Q Consensus 99 ~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~----------g-~~-tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~ 166 (363)
++...+.+.++ |+..|+.-..+..+++|.+-+. . .. +.++||+|+++|+++.+.+|.++.. +.++
T Consensus 141 ~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~~--r~i~ 217 (348)
T TIGR01175 141 RKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLFT--REVP 217 (348)
T ss_pred cHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEEE--EEee
Confidence 45556666655 5778887777777777764332 1 22 4899999999999999999999865 6789
Q ss_pred ccHHHHHHHHHHHHhccCCCccccHHHHHHHHHHcccccCCHHHHHHhcccCCCceeECCCCcEEEEeceeccccccccC
Q 017944 167 VGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQ 246 (363)
Q Consensus 167 ~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~r~~~~E~lF~ 246 (363)
+||.++++.+.+.+. ++.+.++.+|.+.++......+ +.+..+
T Consensus 218 ~G~~~i~~~i~~~~~-------~~~~~Ae~~k~~~~~~~~~~~~-----------------------------~~~~~~- 260 (348)
T TIGR01175 218 FGTRQLTSELSRAYG-------LNPEEAGEAKQQGGLPLLYDPE-----------------------------VLRRFK- 260 (348)
T ss_pred chHHHHHHHHHHHcC-------CCHHHHHHHHhcCCCCCchhHH-----------------------------HHHHHH-
Confidence 999999999988775 6888999999875433211000 000000
Q ss_pred CCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh
Q 017944 247 PSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 300 (363)
Q Consensus 247 p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL 300 (363)
..+..-|.++++-.-........+.|+||||++.++||.+.|+++|
T Consensus 261 --------~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l 306 (348)
T TIGR01175 261 --------GELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL 306 (348)
T ss_pred --------HHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHH
Confidence 1244555555544322222233578999999999999999999999
No 47
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.15 E-value=3.3e-09 Score=99.61 Aligned_cols=185 Identities=21% Similarity=0.315 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHHHhhccCCCCCCC-----------------ceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchh
Q 017944 64 DWDAMEDLLHHVLYAGLGWEEGNE-----------------GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAV 126 (363)
Q Consensus 64 ~~~~~~~i~~~~~~~~l~~~~~~~-----------------~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~ 126 (363)
+.+.++..+++=..+++..+. ++ ..|+++.- ++..-+.++++ |+..|..-..+-.++.
T Consensus 86 ~~~el~~~I~~Ea~~~iP~~~-~e~~~D~~vl~~~~~~~~~~~Vll~Aa---~k~~v~~~~~~-~~~aGL~~~~vDv~~~ 160 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQYIPFPL-EEVVFDYQVLGESEDGEEKMEVLLVAA---PKEIVESYVEL-FEEAGLKPVAVDVEAF 160 (340)
T ss_dssp -HHHHHHHHHHHHGGG-SS-----EEEEEEESS-GS-TTSEEEEEEEEE---EHHHHHHHHHH-HHHTT-EEEEEEEHHH
T ss_pred CHHHHHHHHHHHHHhhCCCCh-hHeEEEEEEeccCCCCCCceEEEEEEE---cHHHHHHHHHH-HHHcCCceEEEeehHH
Confidence 445667777776666555433 22 22333322 34444444433 4667776555544443
Q ss_pred h--hhccC---------CCceEEEEecCCCceEEEEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCccccHHHHH
Q 017944 127 L--SLYAV---------GRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVE 195 (363)
Q Consensus 127 ~--a~~~~---------g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~ 195 (363)
| -+|.. ...+-++||+|+..|.++.+.+|.++.. +.+++||+++++.+.+.+. ++.+.++
T Consensus 161 Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f~--R~i~~G~~~l~~~i~~~~~-------i~~~~Ae 231 (340)
T PF11104_consen 161 ALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIFS--RSIPIGGNDLTEAIARELG-------IDFEEAE 231 (340)
T ss_dssp HGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHHTT---------HHHHH
T ss_pred HHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEEE--EEEeeCHHHHHHHHHHhcC-------CCHHHHH
Confidence 3 23322 1234589999999999999999999865 6789999999999999876 7888889
Q ss_pred HHHHHcccccCCHHHHHHhcccCCCceeECCCCcEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHH
Q 017944 196 KLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQ 275 (363)
Q Consensus 196 ~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~ 275 (363)
.+|..... ..+.. ..+-+.++ ..|..-|.++++-.-......
T Consensus 232 ~~k~~~~l-~~~~~----------------------------~~~l~~~~---------~~l~~EI~rsl~~y~~~~~~~ 273 (340)
T PF11104_consen 232 ELKRSGGL-PEEYD----------------------------QDALRPFL---------EELAREIRRSLDFYQSQSGGE 273 (340)
T ss_dssp HHHHHT-------H----------------------------HHHHHHHH---------HHHHHHHHHHHHHHHHH----
T ss_pred HHHhcCCC-CcchH----------------------------HHHHHHHH---------HHHHHHHHHHHHHHHhcCCCC
Confidence 88876321 11100 00001111 236666666665543333344
Q ss_pred hhcCeEEccCcccccchHHHHHhhh
Q 017944 276 LLENTVLCGGTTSMTGFEDRFQKEA 300 (363)
Q Consensus 276 l~~nIvl~GG~s~l~G~~~rL~~eL 300 (363)
-.+.|+||||+++++||.+.|+++|
T Consensus 274 ~i~~I~L~Ggga~l~gL~~~l~~~l 298 (340)
T PF11104_consen 274 SIERIYLSGGGARLPGLAEYLSEEL 298 (340)
T ss_dssp --SEEEEESGGGGSTTHHHHHHHHH
T ss_pred CCCEEEEECCccchhhHHHHHHHHH
Confidence 5688999999999999999999999
No 48
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.9e-09 Score=97.19 Aligned_cols=112 Identities=17% Similarity=0.166 Sum_probs=78.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCC------ceEEEEecCCCceEEEEe--ecCee-c
Q 017944 88 GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR------ISGCTVDIGHGKIDIAPV--IEGAV-Q 158 (363)
Q Consensus 88 ~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~v~pv--~dG~~-~ 158 (363)
...+++.|.++...+|+..-+ .---.|...+.++++|.+||+++|. .+-+|.|+|+++.+|+.. -+|.- +
T Consensus 173 ~~AVvTvPAYFNDAQrQATKD-AGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeV 251 (663)
T KOG0100|consen 173 THAVVTVPAYFNDAQRQATKD-AGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEV 251 (663)
T ss_pred cceEEecchhcchHHHhhhcc-cceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEE
Confidence 457899999999999965443 3334577789999999999999873 567999999999988754 45532 1
Q ss_pred ccceEEeeccHHHHHHHHHHHHh-----ccCCCccccHHHHHHHHHH
Q 017944 159 HIASRRFEVGGMDLTKLLAQELG-----KTNPSVNLSLYDVEKLKEQ 200 (363)
Q Consensus 159 ~~~~~~~~~GG~~l~~~l~~~l~-----~~~~~~~~~~~~~~~iK~~ 200 (363)
........+||.++++.+++.+- +.+.+++-+...+.+++..
T Consensus 252 laTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~kdnkA~~KLrRe 298 (663)
T KOG0100|consen 252 LATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRRE 298 (663)
T ss_pred EecCCCcccCccchHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHH
Confidence 11222347999999987766543 2345555566666777655
No 49
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.01 E-value=5.1e-09 Score=97.38 Aligned_cols=173 Identities=16% Similarity=0.112 Sum_probs=109.1
Q ss_pred EEcCCCcEEEeecCCCCC-CceecccceeeccC----------------------CCccccCcccccCCce-eccccCCe
Q 017944 6 VDAGSKLLKAGPAIPDQA-PSMVIPSQMKRVLE----------------------DGSSSVDNSTLVEDVT-VDPVVRGF 61 (363)
Q Consensus 6 iD~Gs~~~k~G~~~ge~~-P~~~~ps~~~~~~~----------------------~~~~g~~~~~~~~~~~-~~p~~~g~ 61 (363)
||+|-.++|+-+..++.. -...+||.+..... .+.+| +.+....+.. .+.+.+..
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG-~~a~~~~~~~~~~~~~~~~ 80 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVG-PDVSLAADTNRARQLHDEY 80 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEec-cchhhcccCccceeccccc
Confidence 799999999877512222 24568888753210 01234 3321100000 11122222
Q ss_pred ecCHHHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcc--------cCCCeEEEecchhhhhccC-
Q 017944 62 IRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFET--------FNISGFYSSEQAVLSLYAV- 132 (363)
Q Consensus 62 i~~~~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~--------~~~~~v~~~~~~~~a~~~~- 132 (363)
.. -+....++.+++.. ...+ ....+++-.|...-..+++.+.+.+-.. ..+..|.+.+|++.|.+..
T Consensus 81 ~~-~~~~~~L~~~Al~~-~~~~--~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~ 156 (320)
T TIGR03739 81 TE-TPEYMALLRGALAL-SKVR--EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFV 156 (320)
T ss_pred cC-CHHHHHHHHHHHHH-hcCC--CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHH
Confidence 11 23456666677643 2222 1223666666666566788887776432 5678899999999887643
Q ss_pred --------CCceEEEEecCCCceEEEEeecCeecccceEEeeccHHHHHHHHHHHHhcc
Q 017944 133 --------GRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKT 183 (363)
Q Consensus 133 --------g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~ 183 (363)
.....+|||+|+.+|+++.+-++.+........+.|-..+.+.+.+.+.++
T Consensus 157 ~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 157 AQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred hcCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 234569999999999999999888887776678999999999999988754
No 50
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.81 E-value=1.2e-07 Score=84.96 Aligned_cols=147 Identities=20% Similarity=0.251 Sum_probs=97.3
Q ss_pred HHHhhcccCCCeEEEecchhhhhccC-------C-Cc---eEEEEecCCCceEEEEeecCeecccceEEeeccHHHHHHH
Q 017944 107 VQLMFETFNISGFYSSEQAVLSLYAV-------G-RI---SGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKL 175 (363)
Q Consensus 107 ~e~lfe~~~~~~v~~~~~~~~a~~~~-------g-~~---tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~ 175 (363)
-.-.|+..|..-..+--+..+..-+. + .. ..+|+|||+..|.+..+++|+++.. +..++||+++++.
T Consensus 154 ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly~--r~~~~g~~Qlt~~ 231 (354)
T COG4972 154 RIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILYT--REVPVGTDQLTQE 231 (354)
T ss_pred HHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeeeE--eeccCcHHHHHHH
Confidence 33456666665555544443322111 1 12 2369999999999999999999987 7789999999999
Q ss_pred HHHHHhccCCCccccHHHHHHHHHHcccccCCHHHHHHhcccCCCceeECCCCcEEEEeceeccccccccCCCCCCcccc
Q 017944 176 LAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAH 255 (363)
Q Consensus 176 l~~~l~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~r~~~~E~lF~p~~~~~~~~ 255 (363)
+.+.+. ++.+.++.+|... .+|+.... |.+ .| ...
T Consensus 232 i~r~~~-------L~~~~a~~~k~~~----------------------~~P~~y~~----------~vl-~~-----f~~ 266 (354)
T COG4972 232 IQRAYS-------LTEEKAEEIKRGG----------------------TLPTDYGS----------EVL-RP-----FLG 266 (354)
T ss_pred HHHHhC-------CChhHhHHHHhCC----------------------CCCCchhH----------HHH-HH-----HHH
Confidence 999887 7788888888763 23331110 000 00 002
Q ss_pred cHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh
Q 017944 256 GIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA 300 (363)
Q Consensus 256 ~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL 300 (363)
.|.+-|.++|+..=..--..-...|+|+||++.+.|+.+.+++.|
T Consensus 267 ~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl 311 (354)
T COG4972 267 ELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL 311 (354)
T ss_pred HHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh
Confidence 366666666665311111112578999999999999999999999
No 51
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=5e-07 Score=88.45 Aligned_cols=214 Identities=16% Similarity=0.210 Sum_probs=125.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCC-------ceEEEEecCCCceEEEEee--cCe-e
Q 017944 88 GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR-------ISGCTVDIGHGKIDIAPVI--EGA-V 157 (363)
Q Consensus 88 ~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-------~tglVVDiG~~~t~v~pv~--dG~-~ 157 (363)
..++++.|..+...+|...-+. -...|++.+.++++|.|+++++|. .+-+|.|.|+++.+|.++. +|. .
T Consensus 144 ~~aviTVPa~F~~~Qr~at~~A-~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~ 222 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAATKDA-ALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE 222 (620)
T ss_pred eeEEEEecCCcCHHHHHHHHHH-HHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence 5699999999999988655544 455788999999999999999873 4559999999999999873 332 2
Q ss_pred cccceEEeeccHHHHHHHHHHHHhc-----cCCCcccc-------HHHHHHHHHHcccccCCHHHHHHhcccCCCceeEC
Q 017944 158 QHIASRRFEVGGMDLTKLLAQELGK-----TNPSVNLS-------LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTL 225 (363)
Q Consensus 158 ~~~~~~~~~~GG~~l~~~l~~~l~~-----~~~~~~~~-------~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~l 225 (363)
+....-..++||.++++.|.+++.. .+.+..-. +..+|..|..+.....-.- ..=.|
T Consensus 223 vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i-----------~vdsL 291 (620)
T KOG0101|consen 223 VKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASI-----------EIDSL 291 (620)
T ss_pred hhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhccccccee-----------ccchh
Confidence 2233334689999999887766532 12121111 1234444444321111000 00012
Q ss_pred CCCcEEEEeceeccc---cccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh-c
Q 017944 226 PDGQVIRIGKERYTV---GEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-G 301 (363)
Q Consensus 226 p~~~~i~i~~~r~~~---~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL-~ 301 (363)
-+|..+...-.|.++ +.-||. ...+.+..++...- +-+.....|||+||++.+|.+..-++.-+ .
T Consensus 292 ~~g~d~~~~itrarfe~l~~dlf~---------~~~~~v~~~L~da~--~dk~~i~~vvlVGGstriPk~~~ll~d~f~~ 360 (620)
T KOG0101|consen 292 YEGIDFYTSITRARFEELNADLFR---------STLEPVEKALKDAK--LDKSDIDEVVLVGGSTRIPKVQKLLEDFFNG 360 (620)
T ss_pred hccccccceeehhhhhhhhhHHHH---------HHHHHHHHHHHhhc--cCccCCceeEEecCcccchHHHHHHHHHhcc
Confidence 233333322223332 223332 23333334443321 12223467999999999999988887666 2
Q ss_pred cCCCCcceEEeCCCCCCCcCCcceeeeechhhhhcc
Q 017944 302 LCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 337 (363)
Q Consensus 302 ~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l 337 (363)
. .+...-+ |..++..||++-|.+
T Consensus 361 k-------~~~~sin------pDeavA~GAavqaa~ 383 (620)
T KOG0101|consen 361 K-------ELNKSIN------PDEAVAYGAAVQAAI 383 (620)
T ss_pred c-------ccccCCC------HHHHHHhhHHHHhhh
Confidence 0 1112222 567888899888775
No 52
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.52 E-value=7.5e-06 Score=77.84 Aligned_cols=161 Identities=12% Similarity=0.073 Sum_probs=89.1
Q ss_pred cEEEEcCCCcEEEeecCCCCCCceecccceeec-cCCCccccCcccccCCceeccccCCeecCHHHHHHHHHHHHhhccC
Q 017944 3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV-LEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGLG 81 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~-~~~~~~g~~~~~~~~~~~~~p~~~g~i~~~~~~~~i~~~~~~~~l~ 81 (363)
.|-||+||++|.+=|+ ++.+.+..... ...+.+-..+....-.+..-|+......|-+.+.++.+.-|.+ -+
T Consensus 8 SVGIDIGTsTTqlvfS------rl~l~n~a~~~~vpr~~I~dkev~yrS~i~fTPl~~~~~ID~~~i~~~V~~ey~~-Ag 80 (475)
T PRK10719 8 SVGIDIGTTTTQVIFS------RLELENRASVFQVPRIEIIDKEIIYRSPIYFTPLLKQGEIDEAAIKELIEEEYQK-AG 80 (475)
T ss_pred EEEEeccCceEEEEEE------EEEEecccccccCceEEEeeeEEEEecCceecCCCCCccccHHHHHHHHHHHHHH-cC
Confidence 4679999999999888 23332222110 0000111011111112224788777777999999999988754 56
Q ss_pred CCCC-CCceEEEEcCCCCCHHHHHHHHHHhhc----------ccCCCeEEEecchhhhhccC---C-CceEEEEecCCCc
Q 017944 82 WEEG-NEGQILFTDPLCSPKAVREQLVQLMFE----------TFNISGFYSSEQAVLSLYAV---G-RISGCTVDIGHGK 146 (363)
Q Consensus 82 ~~~~-~~~~v~l~~~~~~~~~~r~~l~e~lfe----------~~~~~~v~~~~~~~~a~~~~---g-~~tglVVDiG~~~ 146 (363)
+.+. -+..+.++--..+...+-+++.+.+-. .+++.++ -.+++|+.+. . ....++||+|+++
T Consensus 81 i~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~i---va~~ASg~avLseEke~gVa~IDIGgGT 157 (475)
T PRK10719 81 IAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESI---IAGKGAGAQTLSEERNTRVLNIDIGGGT 157 (475)
T ss_pred CCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHh---hhHHHhhHHHhhhhccCceEEEEeCCCc
Confidence 6551 122233333223333334444433110 1111111 1133332222 1 2456999999999
Q ss_pred eEEEEeecCeecccceEEeeccHHHHHHH
Q 017944 147 IDIAPVIEGAVQHIASRRFEVGGMDLTKL 175 (363)
Q Consensus 147 t~v~pv~dG~~~~~~~~~~~~GG~~l~~~ 175 (363)
|+++.+.+|.++.. ..+++||++++..
T Consensus 158 T~iaVf~~G~l~~T--~~l~vGG~~IT~D 184 (475)
T PRK10719 158 ANYALFDAGKVIDT--ACLNVGGRLIETD 184 (475)
T ss_pred eEEEEEECCEEEEE--EEEecccceEEEC
Confidence 99999999999976 4489999988764
No 53
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=9.6e-07 Score=86.15 Aligned_cols=95 Identities=17% Similarity=0.228 Sum_probs=75.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCC------------ceEEEEecCCCceEEEEee
Q 017944 86 NEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR------------ISGCTVDIGHGKIDIAPVI 153 (363)
Q Consensus 86 ~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~------------~tglVVDiG~~~t~v~pv~ 153 (363)
.-.+++|..|.+++..+|..+++.. ...|+.-+.++++..|+|+++|. .+-+.||+||+.++++.+.
T Consensus 136 ~v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~a 214 (727)
T KOG0103|consen 136 PVSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAA 214 (727)
T ss_pred CCCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeee
Confidence 4567999999999999999998877 45788899999999999999882 3468899999999988664
Q ss_pred --cCe--ecccceEEeeccHHHHHHHHHHHHhc
Q 017944 154 --EGA--VQHIASRRFEVGGMDLTKLLAQELGK 182 (363)
Q Consensus 154 --dG~--~~~~~~~~~~~GG~~l~~~l~~~l~~ 182 (363)
.|. ++.+ ...-.+||+++++.|.+++..
T Consensus 215 F~kG~lkvl~t-a~D~~lGgr~fDe~L~~hfa~ 246 (727)
T KOG0103|consen 215 FTKGKLKVLAT-AFDRKLGGRDFDEALIDHFAK 246 (727)
T ss_pred eccCcceeeee-ecccccccchHHHHHHHHHHH
Confidence 332 2322 223479999999999887764
No 54
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.3e-06 Score=85.73 Aligned_cols=94 Identities=18% Similarity=0.184 Sum_probs=72.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCC----------ceEEEEecCCCceEEEEeecCee
Q 017944 88 GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGR----------ISGCTVDIGHGKIDIAPVIEGAV 157 (363)
Q Consensus 88 ~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~----------~tglVVDiG~~~t~v~pv~dG~~ 157 (363)
.-++++.|+++...+|+.+.+.. .-.|..-+.++++..++|+.+|. +.-++-|+|+++|..+.|.--.+
T Consensus 159 kd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v 237 (902)
T KOG0104|consen 159 KDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLV 237 (902)
T ss_pred hheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEee
Confidence 45999999999999999888776 45688899999999999998873 34589999999999998842221
Q ss_pred ccc-------ceE------EeeccHHHHHHHHHHHHhc
Q 017944 158 QHI-------ASR------RFEVGGMDLTKLLAQELGK 182 (363)
Q Consensus 158 ~~~-------~~~------~~~~GG~~l~~~l~~~l~~ 182 (363)
-.. .++ ...+||..++..|..+|.+
T Consensus 238 ~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 238 KTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred ccccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 111 111 2258999999999888864
No 55
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3.1e-06 Score=80.50 Aligned_cols=192 Identities=17% Similarity=0.224 Sum_probs=122.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecchhhhhccCCCc-----eEEEEecCCCceEEEE--eecCeec-c
Q 017944 88 GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRI-----SGCTVDIGHGKIDIAP--VIEGAVQ-H 159 (363)
Q Consensus 88 ~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~-----tglVVDiG~~~t~v~p--v~dG~~~-~ 159 (363)
...+++.|.++...+|.. +.-+..-++...+..+++|.+|++++|.. .-.|-|+|.++.+|+. +.+|.-. .
T Consensus 161 ~~avvtvpAyfndsqRqa-Tkdag~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevk 239 (640)
T KOG0102|consen 161 KNAVITVPAYFNDSQRQA-TKDAGQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVK 239 (640)
T ss_pred hheeeccHHHHhHHHHHH-hHhhhhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEE
Confidence 458899999999999864 44444667788889999999999999843 3488999999988875 4666442 2
Q ss_pred cceEEeeccHHHHHHHHHHHHh-----ccCCCccccHHHHHHHHHHcccccCCHHHHHHhccc-CCCceeECC----CC-
Q 017944 160 IASRRFEVGGMDLTKLLAQELG-----KTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKS-CEIEQHTLP----DG- 228 (363)
Q Consensus 160 ~~~~~~~~GG~~l~~~l~~~l~-----~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~-~~~~~~~lp----~~- 228 (363)
..-...-.||.++++.+..++- ..+.+...+...++++++.- |-.+...+ .......+| |.
T Consensus 240 sTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaa--------EkaKielSs~~~tei~lp~iTada~ 311 (640)
T KOG0102|consen 240 STNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREAA--------EKAKIELSSRQQTEINLPFITADAS 311 (640)
T ss_pred eccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHHH--------HhhhhhhhhcccceeccceeeccCC
Confidence 2333456899999999877654 23444444555555665431 11111111 011122222 22
Q ss_pred --cEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHH-----HhhcCeEEccCcccccchHHHHHhhhc
Q 017944 229 --QVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHR-----QLLENTVLCGGTTSMTGFEDRFQKEAG 301 (363)
Q Consensus 229 --~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~-----~l~~nIvl~GG~s~l~G~~~rL~~eL~ 301 (363)
+.+.+...|-+..|. +..+|.+.|.-|-.++|. +=.+.|+|+||.+.+|-..+.+++-+.
T Consensus 312 gpkh~~i~~tr~efe~~-------------v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fg 378 (640)
T KOG0102|consen 312 GPKHLNIELTRGEFEEL-------------VPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFG 378 (640)
T ss_pred CCeeEEEeecHHHHHHh-------------hHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhC
Confidence 455555555554443 566666666666444443 234569999999999999888875553
No 56
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.37 E-value=2.5e-05 Score=70.01 Aligned_cols=154 Identities=19% Similarity=0.299 Sum_probs=85.0
Q ss_pred eEEEEecCCCceEEEEeecCeecccc-eEEeeccHHHHHHHHHHHHhccCCCccccHHHHHHHHHHcccccCCHHHHHHh
Q 017944 136 SGCTVDIGHGKIDIAPVIEGAVQHIA-SRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKT 214 (363)
Q Consensus 136 tglVVDiG~~~t~v~pv~dG~~~~~~-~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~ 214 (363)
...|||+|++.+.++-+.+|.+..-. -..+..|+-.+.+.+.+.|. ++.+.++.+|.+.-...
T Consensus 92 ~~~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~-------~~~~e~~~~~~~~~~~~--------- 155 (248)
T TIGR00241 92 ARGVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRLG-------VSVEELGSLAEKADRKA--------- 155 (248)
T ss_pred CCEEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHcC-------CCHHHHHHHHhcCCCCC---------
Confidence 34699999999999999999876211 13467788888888888877 66677777765521000
Q ss_pred cccCCCceeECCCCcEEEEece-eccccccccCC-CCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccch
Q 017944 215 QKSCEIEQHTLPDGQVIRIGKE-RYTVGEALFQP-SILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGF 292 (363)
Q Consensus 215 ~~~~~~~~~~lp~~~~i~i~~~-r~~~~E~lF~p-~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~ 292 (363)
.+...-.+....+ .....+-. .+ .++..-...+...+.+.+...++ -..|+++||.+..+++
T Consensus 156 ---------~~~~~c~vf~~s~vi~~l~~g~-~~~di~~~~~~~va~~i~~~~~~~~~------~~~Vvl~GGva~n~~l 219 (248)
T TIGR00241 156 ---------KISSMCTVFAESELISLLAAGV-KKEDILAGVYESIAERVAEMLQRLKI------EAPIVFTGGVSKNKGL 219 (248)
T ss_pred ---------CcCCEeEEEechhHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHhhcCC------CCCEEEECccccCHHH
Confidence 0000000000000 00000000 00 00000011233333333333321 1279999999999999
Q ss_pred HHHHHhhhccCCCCcceEEeCCCCCCCcCCcceeeeechhhh
Q 017944 293 EDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAIL 334 (363)
Q Consensus 293 ~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~ 334 (363)
.++|.+.| ...+..+++ +.+.+-+||+++
T Consensus 220 ~~~l~~~l-------g~~v~~~~~------~~~~~AlGaAl~ 248 (248)
T TIGR00241 220 VKALEKKL-------GMKVITPPE------PQIVGAVGAALL 248 (248)
T ss_pred HHHHHHHh-------CCcEEcCCC------ccHHHHHHHHhC
Confidence 99999999 233444444 557778888763
No 57
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.27 E-value=2e-05 Score=73.17 Aligned_cols=176 Identities=24% Similarity=0.265 Sum_probs=88.9
Q ss_pred cEEEEcCCCcEEEeecCCCCC-CceecccceeeccCCCccccCc-cc--ccC--CceeccccCCeec----CH--HHH-H
Q 017944 3 AAVVDAGSKLLKAGPAIPDQA-PSMVIPSQMKRVLEDGSSSVDN-ST--LVE--DVTVDPVVRGFIR----DW--DAM-E 69 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~~ge~~-P~~~~ps~~~~~~~~~~~g~~~-~~--~~~--~~~~~p~~~g~i~----~~--~~~-~ 69 (363)
.|.||-|+.++|+.+. .+.. -..+.|+.....-.....| +. .. ... .+...|.....+. +| ..+ .
T Consensus 2 ~i~iDdG~~~~K~~~~-~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~y~v~g~~yt~~~~~~~~~~t~~~~y~~s~~n~ 79 (318)
T PF06406_consen 2 KIAIDDGSTNVKLAWY-EDGKIKTSISPNSFRSGWKVSFMG-DSKSFNYEVDGEKYTVDEVSSDALDTTHVDYQYSDLNL 79 (318)
T ss_dssp EEEEEE-SSEEEEEEE--SS-EEEEEEE--EESS----S-S-SS---EEESSSSEEEESTTBTTTTSS-HGGGGGSHHHH
T ss_pred eEEEecCCCceeEEEe-cCCeEEEEeccccccccccccccC-CCceeEEEECCEEEEEcCCCCccccccccccccchhhH
Confidence 3789999999999999 3321 2234454432211111111 11 00 000 1112222222211 22 122 2
Q ss_pred HHHHHHHhhccCCCCCCCceEEEEcCCC---CC--HHHHHHHH---HHhh--------cccCCCeEEEecchhhhhccC-
Q 017944 70 DLLHHVLYAGLGWEEGNEGQILFTDPLC---SP--KAVREQLV---QLMF--------ETFNISGFYSSEQAVLSLYAV- 132 (363)
Q Consensus 70 ~i~~~~~~~~l~~~~~~~~~v~l~~~~~---~~--~~~r~~l~---e~lf--------e~~~~~~v~~~~~~~~a~~~~- 132 (363)
-...|++.+ .+..+ .+-.+++..|.- .. ...++.+. +.+. ..+.+..|.+.|++++|.|..
T Consensus 80 ~av~haL~~-~G~~~-~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~ 157 (318)
T PF06406_consen 80 VAVHHALLK-AGLEP-QDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDAL 157 (318)
T ss_dssp HHHHHHHHH-HS--S-SEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHH-cCCCC-CCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHH
Confidence 234566644 45555 566677777732 11 11122221 1121 134578999999999998864
Q ss_pred ----CCceEEEEecCCCceEEEEeecCeecc-cceEEeeccHHHHHHHHHHHHhc
Q 017944 133 ----GRISGCTVDIGHGKIDIAPVIEGAVQH-IASRRFEVGGMDLTKLLAQELGK 182 (363)
Q Consensus 133 ----g~~tglVVDiG~~~t~v~pv~dG~~~~-~~~~~~~~GG~~l~~~l~~~l~~ 182 (363)
...+.+|||+|+.+++++.|.++.... .+....++|-..+.+.+.+.|..
T Consensus 158 ~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 158 MDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp HTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred HhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 246789999999999999998765443 33334578999999999999886
No 58
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.80 E-value=0.00031 Score=66.01 Aligned_cols=48 Identities=27% Similarity=0.417 Sum_probs=39.4
Q ss_pred hhcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhc
Q 017944 276 LLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 336 (363)
Q Consensus 276 l~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~ 336 (363)
+-+.|+++||.++.+|+.+.|++.| ..+++.+++ +++..-+||+++|+
T Consensus 355 i~~~VvftGGva~N~gvv~ale~~L-------g~~iivPe~------pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 355 VREPVILVGGTSLIEGLVKALGDLL-------GIEVVVPEY------SQYIGAVGAALLAS 402 (404)
T ss_pred CCCcEEEECChhhhHHHHHHHHHHh-------CCcEEECCc------ccHHHHHHHHHHhc
Confidence 3455999999999999999999999 334444555 78999999999985
No 59
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.69 E-value=0.003 Score=58.29 Aligned_cols=44 Identities=25% Similarity=0.343 Sum_probs=40.0
Q ss_pred eEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhc
Q 017944 280 TVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 336 (363)
Q Consensus 280 Ivl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~ 336 (363)
||++||++...++.+-|+..| ..+|+.+|. +++...+||+++|+
T Consensus 346 iv~~GGva~n~av~~ale~~l-------g~~V~vP~~------~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLL-------GRKVIVPPY------AQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHh-------CCeeecCCc------cchhhHHHHHHHHh
Confidence 999999999999999999999 567777777 88999999999986
No 60
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.66 E-value=0.00091 Score=60.52 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=38.5
Q ss_pred HhhcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhc
Q 017944 275 QLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 336 (363)
Q Consensus 275 ~l~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~ 336 (363)
.+-..|+++||.+..+|+.+.|+++| ..++.+ .+++ |++..-+||+++|.
T Consensus 238 ~i~~~v~~~GGva~N~~l~~al~~~L-----g~~v~~-~p~~------p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 238 GVEEGFFITGGIAKNPGVVKRIERIL-----GIKAVD-TKID------SQIAGALGAALFGY 287 (293)
T ss_pred CCCCCEEEECcccccHHHHHHHHHHh-----CCCcee-CCCC------ccHHHHHHHHHHHH
Confidence 34567999999999999999999999 112221 2344 77999999999984
No 61
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.58 E-value=0.0016 Score=62.24 Aligned_cols=169 Identities=14% Similarity=0.221 Sum_probs=104.0
Q ss_pred cEEEEcCCCcEEEeecC---CCCCCceecccceeeccCCCccccCcccccCCceeccccCCeecCHHHHHHHHHHHHhhc
Q 017944 3 AAVVDAGSKLLKAGPAI---PDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAG 79 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~~---ge~~P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~~~~~~~~i~~~~~~~~ 79 (363)
.|-||+||+||..=|+. ....+.+..|-+.- ++ .+..+.-.+..-|+......|-+.+.++.+.-|.+
T Consensus 5 SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I-------~d-keViYrS~I~fTPl~~~~~ID~~al~~iv~~eY~~- 75 (473)
T PF06277_consen 5 SVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEI-------VD-KEVIYRSPIYFTPLLSQTEIDAEALKEIVEEEYRK- 75 (473)
T ss_pred EEEEeecCCceeEEEEEeEEEeccCCCccceEEE-------ec-cEEEecCCccccCCCCCCccCHHHHHHHHHHHHHH-
Confidence 57799999999998882 01112222222211 11 11111112224788877777999999999988754
Q ss_pred cCCCCCCC---ceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEe------cchhhhhccCC--------CceEEEEec
Q 017944 80 LGWEEGNE---GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSS------EQAVLSLYAVG--------RISGCTVDI 142 (363)
Q Consensus 80 l~~~~~~~---~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~------~~~~~a~~~~g--------~~tglVVDi 142 (363)
-++.+ ++ --|++|--.- .+++-+.+.+.|-+..| =|++ -++++|..|+| ..+-+=+||
T Consensus 76 Agi~p-~~I~TGAVIITGETA-rKeNA~~v~~~Ls~~aG---DFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDI 150 (473)
T PF06277_consen 76 AGITP-EDIDTGAVIITGETA-RKENAREVLHALSGFAG---DFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDI 150 (473)
T ss_pred cCCCH-HHCccccEEEecchh-hhhhHHHHHHHHHHhcC---CEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEe
Confidence 66665 32 3456554433 34444455555554443 1222 35677888877 234456799
Q ss_pred CCCceEEEEeecCeecccceEEeeccHHH-----------HHHHHHHHHhccCCCc
Q 017944 143 GHGKIDIAPVIEGAVQHIASRRFEVGGMD-----------LTKLLAQELGKTNPSV 187 (363)
Q Consensus 143 G~~~t~v~pv~dG~~~~~~~~~~~~GG~~-----------l~~~l~~~l~~~~~~~ 187 (363)
|+++|.++.+-+|.++..++ +++||+. +..-++.++.+.+.+.
T Consensus 151 GGGTtN~avf~~G~v~~T~c--l~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 151 GGGTTNIAVFDNGEVIDTAC--LDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred CCCceeEEEEECCEEEEEEE--EeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 99999999999999998765 7999983 3345556666555544
No 62
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=96.94 E-value=0.0073 Score=53.58 Aligned_cols=93 Identities=16% Similarity=0.147 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhcccCCCeEEEecchhhhhccCCCc-----eEEEEecCCCceEEEEeecCeecccceEEeeccHHHHHH
Q 017944 100 KAVREQLVQLMFETFNISGFYSSEQAVLSLYAVGRI-----SGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTK 174 (363)
Q Consensus 100 ~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~-----tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~ 174 (363)
+-+-+.+++.+-+.++++.-.-..++-+|..+.=.+ .-.|+|+|+++|+.+.+-....+. ..++-=+|+-+|.
T Consensus 94 ~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~--~iHlAGAG~mVTm 171 (332)
T PF08841_consen 94 KLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT--AIHLAGAGNMVTM 171 (332)
T ss_dssp S-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE--EEEEE-SHHHHHH
T ss_pred cccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE--EEEecCCchhhHH
Confidence 344557778888889998888888888888877443 237899999999998885544442 2456778999999
Q ss_pred HHHHHHhccCCCccccHHHHHHHHHH
Q 017944 175 LLAQELGKTNPSVNLSLYDVEKLKEQ 200 (363)
Q Consensus 175 ~l~~~l~~~~~~~~~~~~~~~~iK~~ 200 (363)
.+.+-|.- -+.+++|+||+-
T Consensus 172 lI~sELGl------~d~~lAE~IKky 191 (332)
T PF08841_consen 172 LINSELGL------EDRELAEDIKKY 191 (332)
T ss_dssp HHHHHCT-------S-HHHHHHHHHS
T ss_pred HHHHhhCC------CCHHHHHHhhhc
Confidence 99998872 378899999964
No 63
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.017 Score=56.59 Aligned_cols=152 Identities=17% Similarity=0.182 Sum_probs=76.4
Q ss_pred ccEEEEcCCCcEEEeecCCCCCCceecccceeeccCCCccccCcccccCCceeccccCCeecCHHHHHHHHHHH--Hhhc
Q 017944 2 EAAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHV--LYAG 79 (363)
Q Consensus 2 ~~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~~~~~~~~i~~~~--~~~~ 79 (363)
..-+||+||.++|.=.+ +..| --+..+...+..+-.| +... ..|.+ +-+.+++.++-+ |.+.
T Consensus 4 ~~A~IDiGSNS~rlvV~--~~~~--~~~~~l~~~k~~vrLg-egl~----------~~g~L-~~eai~R~~~aL~~f~e~ 67 (492)
T COG0248 4 RVAAIDLGSNSFRLVVA--EITP--GSFQVLFREKRIVRLG-EGLD----------ATGNL-SEEAIERALSALKRFAEL 67 (492)
T ss_pred eEEEEEecCCeEEEEEE--eccC--Cccchhhhhhhheehh-cCcc----------ccCCc-CHHHHHHHHHHHHHHHHH
Confidence 44589999999999888 3233 1122221111112233 2110 12332 334454444322 2222
Q ss_pred cC-CCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEe---cchhhhhccC----C-CceEEEEecCCCceEEE
Q 017944 80 LG-WEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSS---EQAVLSLYAV----G-RISGCTVDIGHGKIDIA 150 (363)
Q Consensus 80 l~-~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~---~~~~~a~~~~----g-~~tglVVDiG~~~t~v~ 150 (363)
+. ... .+-.++-|. .+-.-.+.....+.+-+.+|.+ +.++ .++-++.+|. + ...++|+|+|+++|.++
T Consensus 68 ~~~~~~-~~v~~vATs-A~R~A~N~~eFl~rv~~~~G~~-ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~ 144 (492)
T COG0248 68 LDGFGA-EEVRVVATS-ALRDAPNGDEFLARVEKELGLP-IEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELV 144 (492)
T ss_pred HhhCCC-CEEEEehhH-HHHcCCCHHHHHHHHHHHhCCc-eEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEE
Confidence 21 222 232333333 2222233344444444555654 3333 3444444332 3 67899999999999999
Q ss_pred EeecCeecccceEEeeccHHHHHH
Q 017944 151 PVIEGAVQHIASRRFEVGGMDLTK 174 (363)
Q Consensus 151 pv~dG~~~~~~~~~~~~GG~~l~~ 174 (363)
-+-+..+... ..+|+|.-.+++
T Consensus 145 ~g~~~~~~~~--~Sl~~G~v~lt~ 166 (492)
T COG0248 145 LGDNFEIGLL--ISLPLGCVRLTE 166 (492)
T ss_pred EecCCcccee--EEeecceEEeeh
Confidence 9887777643 557888654443
No 64
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=96.46 E-value=0.019 Score=52.92 Aligned_cols=85 Identities=13% Similarity=0.074 Sum_probs=55.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEecch---hhhhcc----CCCceEEEEecCCCceEEEEeecCeeccc
Q 017944 88 GQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSEQA---VLSLYA----VGRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (363)
Q Consensus 88 ~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~---~~a~~~----~g~~tglVVDiG~~~t~v~pv~dG~~~~~ 160 (363)
..++-| ..+....+++.+.+.+.+..|+ .+.+++.. .+...+ ....+++++|+|+++|.++-+.+|.+...
T Consensus 73 i~~vaT-sa~R~A~N~~~~~~~i~~~tgi-~i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~~~ 150 (300)
T TIGR03706 73 VRAVAT-AALRDAKNGPEFLREAEAILGL-PIEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPGEG 150 (300)
T ss_pred EEEEEc-HHHHcCCCHHHHHHHHHHHHCC-CeEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEeEE
Confidence 333333 3343445677777777776776 34455433 222222 23345799999999999999998887644
Q ss_pred ceEEeeccHHHHHHHH
Q 017944 161 ASRRFEVGGMDLTKLL 176 (363)
Q Consensus 161 ~~~~~~~GG~~l~~~l 176 (363)
..+|+|.-.+++.+
T Consensus 151 --~Sl~lG~vrl~e~f 164 (300)
T TIGR03706 151 --VSLPLGCVRLTEQF 164 (300)
T ss_pred --EEEccceEEhHHhh
Confidence 57899987777654
No 65
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=96.37 E-value=0.02 Score=56.57 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=50.9
Q ss_pred CCCCCHHHHHHHHHHhhcccCCCeEEEec---chhhhhccC-----CCceEEEEecCCCceEEEEeecCeecccceEEee
Q 017944 95 PLCSPKAVREQLVQLMFETFNISGFYSSE---QAVLSLYAV-----GRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFE 166 (363)
Q Consensus 95 ~~~~~~~~r~~l~e~lfe~~~~~~v~~~~---~~~~a~~~~-----g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~ 166 (363)
...-...+++.+.+-+.+..|++ |.+++ ++.++.+|. ...+++|+|||+++|.++.+.+|.+... ..+|
T Consensus 85 sAvReA~N~~~fl~~i~~~tGl~-ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~~--~Sl~ 161 (496)
T PRK11031 85 ATLRLAVNADEFLAKAQEILGCP-VQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQATSL--FSLS 161 (496)
T ss_pred HHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCceeee--eEEe
Confidence 33434455667777777766763 34433 333333222 1235899999999999999999988754 5689
Q ss_pred ccHHHHHHH
Q 017944 167 VGGMDLTKL 175 (363)
Q Consensus 167 ~GG~~l~~~ 175 (363)
+|.-.+++.
T Consensus 162 lG~vrl~e~ 170 (496)
T PRK11031 162 MGCVTWLER 170 (496)
T ss_pred ccchHHHHH
Confidence 998776643
No 66
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.19 E-value=0.12 Score=46.22 Aligned_cols=50 Identities=16% Similarity=0.323 Sum_probs=38.2
Q ss_pred cCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCcCCcceeeeechhhhh
Q 017944 278 ENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 335 (363)
Q Consensus 278 ~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a 335 (363)
++|+++||.+.-+++.+.|+++|...+ ..+.+..+++ +++..-+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~~--~~~~v~~~~~------~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEAK--MAVAAENHPD------AIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccCC--cceEecCCCc------chHHHHHHHHHcC
Confidence 469999999999999999999882111 2344555556 7888999998875
No 67
>PRK10854 exopolyphosphatase; Provisional
Probab=95.66 E-value=0.048 Score=54.17 Aligned_cols=151 Identities=15% Similarity=0.098 Sum_probs=78.7
Q ss_pred cEEEEcCCCcEEEeecCCCCCCceecccceeeccCCCccccCcccccCCceeccccCCeecCHHHHHHHHHHH--Hhhcc
Q 017944 3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHV--LYAGL 80 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~~~~~~~~i~~~~--~~~~l 80 (363)
.-|||+||.++|.-.+ .- .+. .+ ..+.......-.| +. -...|.+ +.+.+++.++-+ |.+.+
T Consensus 13 ~A~IDIGSNSirL~I~-e~-~~~-~~-~~i~~~k~~vrLg-~g----------~~~~g~L-s~e~~~r~~~~L~~F~~~~ 76 (513)
T PRK10854 13 FAAVDLGSNSFHMVIA-RV-VDG-AM-QIIGRLKQRVHLA-DG----------LDSDNML-SEEAMERGLNCLSLFAERL 76 (513)
T ss_pred EEEEEeccchheEEEE-Ee-cCC-cE-EEeeeeeEEEECC-CC----------cCCCCCc-CHHHHHHHHHHHHHHHHHH
Confidence 4589999999999888 22 121 01 0110001111123 11 1124443 345555444332 12222
Q ss_pred C-CCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEec---chhhhhccCC-----CceEEEEecCCCceEEEE
Q 017944 81 G-WEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSE---QAVLSLYAVG-----RISGCTVDIGHGKIDIAP 151 (363)
Q Consensus 81 ~-~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~---~~~~a~~~~g-----~~tglVVDiG~~~t~v~p 151 (363)
. ... .+..++-| ...-...++..+++.+.+..|++ +.+++ ++.++.+|.- ..+++|||||+++|.++.
T Consensus 77 ~~~~v-~~v~~vAT-sAlReA~N~~~fl~~i~~~tGl~-i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~ 153 (513)
T PRK10854 77 QGFSP-ANVCIVGT-HTLRQALNATDFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVI 153 (513)
T ss_pred HhCCC-CeEEEEeh-HHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEE
Confidence 1 112 22333333 33434455667777777777764 34443 3333322221 245899999999999999
Q ss_pred eecCeecccceEEeeccHHHHHH
Q 017944 152 VIEGAVQHIASRRFEVGGMDLTK 174 (363)
Q Consensus 152 v~dG~~~~~~~~~~~~GG~~l~~ 174 (363)
+-+|.+... ...++|.-.+++
T Consensus 154 ~~~~~~~~~--~S~~lG~vrl~e 174 (513)
T PRK10854 154 GENFEPILV--ESRRMGCVSFAQ 174 (513)
T ss_pred ecCCCeeEe--EEEecceeeHHh
Confidence 999876643 445888765555
No 68
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=95.07 E-value=0.19 Score=47.45 Aligned_cols=51 Identities=14% Similarity=0.277 Sum_probs=39.8
Q ss_pred hhcCeEEccCcccccchHHHHHhhh-ccCCCCcceEEeCCCCCCCcCCcceeeeechhhhh
Q 017944 276 LLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 335 (363)
Q Consensus 276 l~~nIvl~GG~s~l~G~~~rL~~eL-~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a 335 (363)
+-..|+++||.++-+++.+.|++.| .-.+ ..+|+.+++ +++..-+||+++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~------pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPD------SIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCC------ccHHHHHHHHHhC
Confidence 3467999999999999999999999 3221 234555666 7899999999875
No 69
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=94.99 E-value=0.14 Score=40.27 Aligned_cols=59 Identities=24% Similarity=0.396 Sum_probs=43.7
Q ss_pred EEEecCCCceEEEEeecCeecccceEEeecc--------HHHHH--HHHHHHHhccCCCccccHHHHHHH-HHHccccc
Q 017944 138 CTVDIGHGKIDIAPVIEGAVQHIASRRFEVG--------GMDLT--KLLAQELGKTNPSVNLSLYDVEKL-KEQFSCCA 205 (363)
Q Consensus 138 lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~G--------G~~l~--~~l~~~l~~~~~~~~~~~~~~~~i-K~~~~~v~ 205 (363)
++||+|+++|.++...++.... ...+++| |.+++ +.+.+-++ ...+.+|++ |.++..+.
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~-------~a~~~AE~~~k~~i~~v~ 71 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIK-------IAIEEAERLAKCEIGSVY 71 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT---------HHHHHHH-HHHH--S-
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHH-------HHHHHHHHHhCCeeeEEE
Confidence 6899999999999999987765 4568999 99999 89998887 567788988 88876554
No 70
>PRK09557 fructokinase; Reviewed
Probab=94.85 E-value=1.5 Score=40.31 Aligned_cols=53 Identities=19% Similarity=0.094 Sum_probs=38.4
Q ss_pred HHHHhhcccCCCeEEEecchhhhhccC-------CCceEEEEecCCCceEEEEeecCeeccc
Q 017944 106 LVQLMFETFNISGFYSSEQAVLSLYAV-------GRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (363)
Q Consensus 106 l~e~lfe~~~~~~v~~~~~~~~a~~~~-------g~~tglVVDiG~~~t~v~pv~dG~~~~~ 160 (363)
+.+.+-+.+++| |.+.++.-|++++- +..+.+.+.+|. .+-...|.||.++..
T Consensus 88 l~~~l~~~~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igt-GiG~giv~~G~l~~G 147 (301)
T PRK09557 88 LDKDLSARLNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGT-GCGAGVAINGRVHIG 147 (301)
T ss_pred HHHHHHHHHCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEcc-ceEEEEEECCEEEec
Confidence 444555667887 88999998888653 246677888986 567777889988764
No 71
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=94.81 E-value=0.2 Score=44.09 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.3
Q ss_pred CceEEEEecCCCceEEEEeecCe
Q 017944 134 RISGCTVDIGHGKIDIAPVIEGA 156 (363)
Q Consensus 134 ~~tglVVDiG~~~t~v~pv~dG~ 156 (363)
..+++.||+|..+|+|+||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 46799999999999999999996
No 72
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=94.45 E-value=3.1 Score=38.48 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=40.7
Q ss_pred HHHHhhcccCCCeEEEecchhhhhcc-------CCCceEEEEecCCCceEEEEeecCeeccc
Q 017944 106 LVQLMFETFNISGFYSSEQAVLSLYA-------VGRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (363)
Q Consensus 106 l~e~lfe~~~~~~v~~~~~~~~a~~~-------~g~~tglVVDiG~~~t~v~pv~dG~~~~~ 160 (363)
+.+.+=+.+++| +++.++.-+++++ .+..+.++|.+|.+. ....|.+|.++..
T Consensus 89 l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~G 148 (318)
T TIGR00744 89 LKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRHG 148 (318)
T ss_pred HHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEeec
Confidence 445555677887 8899999888873 245789999999865 7778889998764
No 73
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=94.37 E-value=0.15 Score=46.19 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh-ccCCCCcceEEeCCCCCCCcCCcceeeeechhhhh
Q 017944 257 IVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILA 335 (363)
Q Consensus 257 l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL-~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a 335 (363)
|.+.+...+.+.+... ..|+++||......+.+.|.+.| +..+.. ++.+... |.+.+..||.++|
T Consensus 206 la~~i~~~~~~~~~~~-----~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~-~~~~~~~--------~~~~~a~GAallA 271 (271)
T PF01869_consen 206 LAELIKAVLKRLGPEK-----EPVVLSGGVFKNSPLVKALRDALKEKLPKV-PIIIPVE--------PQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHTCTCCC-----CSEEEESGGGGCHHHHHHHGGGS-HHHHCC-TCECECC--------GSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCC-----CeEEEECCccCchHHHHHHHHHHHHhcCCC-ceEECCC--------CCccHHHHHHHhC
Confidence 5555555555554321 12999999998888888887666 332221 3333332 5689999999886
No 74
>PRK13317 pantothenate kinase; Provisional
Probab=93.91 E-value=0.56 Score=42.62 Aligned_cols=50 Identities=26% Similarity=0.230 Sum_probs=38.9
Q ss_pred hcCeEEcc-CcccccchHHHHHhhhccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhc
Q 017944 277 LENTVLCG-GTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 336 (363)
Q Consensus 277 ~~nIvl~G-G~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~ 336 (363)
.++|+++| |.+..|++.++|.+.+.+. ..++.-+++ +++..-+||++++.
T Consensus 223 ~~~Ivf~G~gla~n~~l~~~l~~~l~~~----~~~~~~p~~------~~~~gAlGAaL~a~ 273 (277)
T PRK13317 223 IENIVYIGSTLTNNPLLQEIIESYTKLR----NCTPIFLEN------GGYSGAIGALLLAT 273 (277)
T ss_pred CCeEEEECcccccCHHHHHHHHHHHhcC----CceEEecCC------CchhHHHHHHHHhh
Confidence 47899999 7999999999999888331 234444555 77999999998875
No 75
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=91.59 E-value=1.6 Score=40.10 Aligned_cols=191 Identities=15% Similarity=0.162 Sum_probs=96.6
Q ss_pred cEEEEcCCCcEEEeecCCCCCCceecccceeec-cCCC-ccccCcccccCCceeccccCCeecCHHHHHHHHHHHHhhcc
Q 017944 3 AAVVDAGSKLLKAGPAIPDQAPSMVIPSQMKRV-LEDG-SSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYAGL 80 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~~ge~~P~~~~ps~~~~~-~~~~-~~g~~~~~~~~~~~~~p~~~g~i~~~~~~~~i~~~~~~~~l 80 (363)
.|-||+|+++|.+=|+. +.+-++.... ...+ ++. .+..+...+-..|+..---.|-+.++.+...-|.+ -
T Consensus 7 SVGIDiGTsTTQvifS~------lel~Nmas~~~VPri~ii~-kdi~~rS~i~FTPv~~q~~id~~alk~~v~eeY~~-A 78 (473)
T COG4819 7 SVGIDIGTSTTQVIFSK------LELVNMASVSQVPRIEIIK-KDISWRSPIFFTPVDKQGGIDEAALKKLVLEEYQA-A 78 (473)
T ss_pred eeeeeccCceeeeeeee------eEEeecccccccceEEEEe-cceeeecceeeeeecccCCccHHHHHHHHHHHHHH-c
Confidence 46799999999998882 2222221100 0000 010 00000001112455333334667777777665543 4
Q ss_pred CCCCC--CCceEEEEcCCCCCHHHHHHHHHHhhcccCCCeEEEec------chhhhhccCC-------CceE-EEEecCC
Q 017944 81 GWEEG--NEGQILFTDPLCSPKAVREQLVQLMFETFNISGFYSSE------QAVLSLYAVG-------RISG-CTVDIGH 144 (363)
Q Consensus 81 ~~~~~--~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~~~v~~~~------~~~~a~~~~g-------~~tg-lVVDiG~ 144 (363)
++.+. ..-.++++-.....+.-|. ....+-..+| -+++- +++.|--++| +.++ +=+|||+
T Consensus 79 Gi~pesi~sGAvIITGEtArk~NA~~-vl~alSg~aG---DFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGG 154 (473)
T COG4819 79 GIAPESIDSGAVIITGETARKRNARP-VLMALSGSAG---DFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGG 154 (473)
T ss_pred CCChhccccccEEEeccccccccchH-HHHHhhhccc---ceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccC
Confidence 55551 2235666655443333332 2222222222 22221 2222322333 2333 4579999
Q ss_pred CceEEEEeecCeecccceEEeeccHHHHH------------HHHHHHHhccCCCc------------cccHHHHHHHHHH
Q 017944 145 GKIDIAPVIEGAVQHIASRRFEVGGMDLT------------KLLAQELGKTNPSV------------NLSLYDVEKLKEQ 200 (363)
Q Consensus 145 ~~t~v~pv~dG~~~~~~~~~~~~GG~~l~------------~~l~~~l~~~~~~~------------~~~~~~~~~iK~~ 200 (363)
++|..+-+-.|.+...++ +++||+.+. +-...++.+.+.+. .+..++++-+++.
T Consensus 155 GTtN~slFD~Gkv~dTaC--LdiGGRLik~drst~~v~Yi~~k~q~lI~~~g~~it~g~k~~~~~l~~v~~emaell~~~ 232 (473)
T COG4819 155 GTTNYSLFDAGKVSDTAC--LDIGGRLIKTDRSTGRVVYIHKKGQMLIDECGGAITDGRKLTGAQLVQVTREMAELLVEV 232 (473)
T ss_pred Cccceeeeccccccccee--eecCcEEEEeecccceEEEEccchHHHHHHcCCCcchhhccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999998766 799998442 22333444444443 2345677777777
Q ss_pred cccccCC
Q 017944 201 FSCCAED 207 (363)
Q Consensus 201 ~~~v~~~ 207 (363)
..+-+.+
T Consensus 233 v~~ga~s 239 (473)
T COG4819 233 VDFGALS 239 (473)
T ss_pred hccCCCC
Confidence 6655444
No 76
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=90.93 E-value=0.47 Score=43.31 Aligned_cols=74 Identities=18% Similarity=0.273 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhcccCCCeEEEecch---hhhh----ccC-CCceEEEEecCCCceEEEEeecCeecccceEEeeccHHH
Q 017944 100 KAVREQLVQLMFETFNISGFYSSEQA---VLSL----YAV-GRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMD 171 (363)
Q Consensus 100 ~~~r~~l~e~lfe~~~~~~v~~~~~~---~~a~----~~~-g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~ 171 (363)
..++..+.+.+.+..|++ +.+++.. .++. .+. ...+++|+|+|+++|.++.+.+|.+... ..+|+|.-.
T Consensus 70 A~N~~~~~~~i~~~tGi~-i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~~--~Sl~lG~vr 146 (285)
T PF02541_consen 70 AKNSDEFLDRIKKETGID-IEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVVFS--QSLPLGAVR 146 (285)
T ss_dssp STTHHHHHHHHHHHHSS--EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEEEE--EEES--HHH
T ss_pred CcCHHHHHHHHHHHhCCc-eEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeeeEe--eeeehHHHH
Confidence 345566777777777774 4444422 2221 222 6788999999999999999999998854 668999887
Q ss_pred HHHHH
Q 017944 172 LTKLL 176 (363)
Q Consensus 172 l~~~l 176 (363)
+++.+
T Consensus 147 l~e~~ 151 (285)
T PF02541_consen 147 LTERF 151 (285)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77655
No 77
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=90.77 E-value=0.22 Score=45.59 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=23.3
Q ss_pred hhc-cCCCceEEEEecCCCceEEEEeecCeeccc
Q 017944 128 SLY-AVGRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (363)
Q Consensus 128 a~~-~~g~~tglVVDiG~~~t~v~pv~dG~~~~~ 160 (363)
+++ ..|..++++||+|+.+|+|++|.||.+...
T Consensus 69 a~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~~ 102 (290)
T PF01968_consen 69 AAARLTGLENAIVVDMGGTTTDIALIKDGRPEIS 102 (290)
T ss_dssp HHH--HT-SSEEEEEE-SS-EEEEEEETTEE---
T ss_pred hhhhcCCCCCEEEEeCCCCEEEEEEEECCeeecc
Confidence 444 557889999999999999999999999643
No 78
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=90.42 E-value=1.1 Score=41.66 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=25.8
Q ss_pred CCCceEEEEecCCCceEEEEeecCeeccc
Q 017944 132 VGRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (363)
Q Consensus 132 ~g~~tglVVDiG~~~t~v~pv~dG~~~~~ 160 (363)
+...+-++||+|++.|.+..|.+|+++..
T Consensus 151 y~~~nfIlvEiG~~yta~iaV~~GkIVDG 179 (343)
T PF07318_consen 151 YREVNFILVEIGSGYTAAIAVKNGKIVDG 179 (343)
T ss_pred cccceEEEEEccCCceEEEEEECCeEEcc
Confidence 45569999999999999999999999865
No 79
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=89.75 E-value=2 Score=38.33 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=14.3
Q ss_pred EEEEcCCCcEEEeec
Q 017944 4 AVVDAGSKLLKAGPA 18 (363)
Q Consensus 4 vViD~Gs~~~k~G~~ 18 (363)
++||+|-++++.|+.
T Consensus 3 L~iDiGNT~~~~a~~ 17 (251)
T COG1521 3 LLIDIGNTRIVFALY 17 (251)
T ss_pred EEEEeCCCeEEEEEe
Confidence 689999999999999
No 80
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=87.41 E-value=0.81 Score=40.83 Aligned_cols=155 Identities=18% Similarity=0.194 Sum_probs=82.7
Q ss_pred ceEEEEecCCCceEEEEeecCeecccceEEe----eccHHHHHHHHHHHHhccCCCccccHHHHHHHHHH------cccc
Q 017944 135 ISGCTVDIGHGKIDIAPVIEGAVQHIASRRF----EVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQ------FSCC 204 (363)
Q Consensus 135 ~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~----~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~iK~~------~~~v 204 (363)
-+-+.|.+|...|..+.|.+|+++..-..+. -.||-.++-.+.-.|.. .++++-+. .+|+
T Consensus 163 ~nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa~----------~~~~fsK~~lf~gGa~~i 232 (374)
T COG2441 163 VNFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALAN----------YLERFSKSLLFEGGAAYI 232 (374)
T ss_pred hhhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHHH----------hhhhccHhheeccccccc
Confidence 4558899999999999999999986533322 45565566655555542 11122111 1222
Q ss_pred cC--CHHHHHHhcccCCCceeECCCCcEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHHHhhcCeEE
Q 017944 205 AE--DELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVL 282 (363)
Q Consensus 205 ~~--~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl 282 (363)
.. ++++..+.... |+ ..... .-+.+.|.+.+..+-++.++ .-|++
T Consensus 233 ~gv~sp~ef~~~ake---------~e--------nle~~-------------~~l~e~vvK~v~tllps~~p---d~iyl 279 (374)
T COG2441 233 AGVDSPEEFVKLAKE---------DE--------NLETY-------------NALIEGVVKDVFTLLPSTYP---DAIYL 279 (374)
T ss_pred ccCCCHHHHHHHhhc---------cc--------chHHH-------------HHHHHHHHHHHHHhccccCc---ceEEE
Confidence 21 13333221110 00 00000 12556666666655444433 23999
Q ss_pred ccCcccccchHHHHHhhh-c-cCCCCcceEEeCCCCCCCcCCcceeeeechhhhhc
Q 017944 283 CGGTTSMTGFEDRFQKEA-G-LCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 336 (363)
Q Consensus 283 ~GG~s~l~G~~~rL~~eL-~-~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~ 336 (363)
+|-.+++|-|-.-+...| . +......+.|..-..+. +.--+..||+++|+
T Consensus 280 SGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~----K~KeaA~GaAiiAn 331 (374)
T COG2441 280 SGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRA----KAKEAAEGAAIIAN 331 (374)
T ss_pred eeecccccchhhHHHHHHHHHHhhcCccceeehhhhhh----hhhhhccchhhhhh
Confidence 999999988877777777 2 22222233332222111 33446688888887
No 81
>PRK13324 pantothenate kinase; Reviewed
Probab=86.57 E-value=13 Score=33.43 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=14.7
Q ss_pred cEEEEcCCCcEEEeec
Q 017944 3 AAVVDAGSKLLKAGPA 18 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~ 18 (363)
-+.||+|-+++|.|+.
T Consensus 2 iL~iDiGNT~ik~gl~ 17 (258)
T PRK13324 2 LLVMDMGNSHIHIGVF 17 (258)
T ss_pred EEEEEeCCCceEEEEE
Confidence 4789999999999998
No 82
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=85.50 E-value=0.76 Score=42.49 Aligned_cols=31 Identities=32% Similarity=0.389 Sum_probs=26.8
Q ss_pred ccCCCceEEEEecCCCceEEEEeecCeeccc
Q 017944 130 YAVGRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (363)
Q Consensus 130 ~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~ 160 (363)
++....+++.+|+|+.+|+|+||.+|.+...
T Consensus 123 la~~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 123 IAKRIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred HHhcCCCEEEEEcCccceeeEEecCCEeeee
Confidence 3345788999999999999999999999764
No 83
>PRK13321 pantothenate kinase; Reviewed
Probab=84.37 E-value=6.4 Score=35.29 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=14.3
Q ss_pred EEEEcCCCcEEEeec
Q 017944 4 AVVDAGSKLLKAGPA 18 (363)
Q Consensus 4 vViD~Gs~~~k~G~~ 18 (363)
+.||+|.+++|+|+.
T Consensus 3 L~IDIGnT~ik~gl~ 17 (256)
T PRK13321 3 LLIDVGNTNIKLGVF 17 (256)
T ss_pred EEEEECCCeEEEEEE
Confidence 789999999999999
No 84
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=83.10 E-value=6 Score=37.57 Aligned_cols=17 Identities=29% Similarity=0.435 Sum_probs=15.5
Q ss_pred CceEEEEecCCCceEEE
Q 017944 134 RISGCTVDIGHGKIDIA 150 (363)
Q Consensus 134 ~~tglVVDiG~~~t~v~ 150 (363)
..|.-|+|+|+++|+++
T Consensus 212 ~~tvgv~DLGGGSTQi~ 228 (453)
T KOG1385|consen 212 HRTVGVVDLGGGSTQIT 228 (453)
T ss_pred CCceEEEEcCCceEEEE
Confidence 57889999999999997
No 85
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=81.42 E-value=18 Score=32.14 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=14.0
Q ss_pred EEEEcCCCcEEEeec
Q 017944 4 AVVDAGSKLLKAGPA 18 (363)
Q Consensus 4 vViD~Gs~~~k~G~~ 18 (363)
++||+|-+++|+|+.
T Consensus 2 L~iDiGNT~i~~g~~ 16 (243)
T TIGR00671 2 LLIDVGNTRIVFALN 16 (243)
T ss_pred EEEEECCCcEEEEEE
Confidence 679999999999988
No 86
>PRK13318 pantothenate kinase; Reviewed
Probab=80.45 E-value=33 Score=30.67 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=14.7
Q ss_pred cEEEEcCCCcEEEeec
Q 017944 3 AAVVDAGSKLLKAGPA 18 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~ 18 (363)
.+.||+|.+++|+|+.
T Consensus 2 iL~IDIGnT~iK~al~ 17 (258)
T PRK13318 2 LLAIDVGNTNTVFGLY 17 (258)
T ss_pred EEEEEECCCcEEEEEE
Confidence 3689999999999999
No 87
>PRK13320 pantothenate kinase; Reviewed
Probab=78.40 E-value=24 Score=31.35 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=14.6
Q ss_pred cEEEEcCCCcEEEeec
Q 017944 3 AAVVDAGSKLLKAGPA 18 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~ 18 (363)
-+.||+|-+++|+|+.
T Consensus 4 ~L~iDiGNT~ik~~~~ 19 (244)
T PRK13320 4 NLVIDIGNTTTKLAVF 19 (244)
T ss_pred EEEEEeCCCcEEEEEE
Confidence 3679999999999998
No 88
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=75.97 E-value=63 Score=29.48 Aligned_cols=91 Identities=20% Similarity=0.250 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhccCCCCCC--CceEEEEcCCCCCHHHHHHHHHHhhcccC--CCeEEEecchhhhhccC--CCceEEE
Q 017944 66 DAMEDLLHHVLYAGLGWEEGN--EGQILFTDPLCSPKAVREQLVQLMFETFN--ISGFYSSEQAVLSLYAV--GRISGCT 139 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~--~~~v~l~~~~~~~~~~r~~l~e~lfe~~~--~~~v~~~~~~~~a~~~~--g~~tglV 139 (363)
+.++++++.++.+ -+++. + -+.+.|..+-......-+++.+.+=..|. +..+++..++..++++. |...|+|
T Consensus 47 ~rie~~i~~A~~k-~g~d~-~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiV 124 (336)
T KOG1794|consen 47 SRIEDMIREAKEK-AGWDK-KGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIV 124 (336)
T ss_pred HHHHHHHHHHHhh-cCCCc-cCccceeeeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEE
Confidence 3567777777654 44554 3 35678877777777777777777755553 34477888888877766 4589999
Q ss_pred EecCCCceEEEEeecCeec
Q 017944 140 VDIGHGKIDIAPVIEGAVQ 158 (363)
Q Consensus 140 VDiG~~~t~v~pv~dG~~~ 158 (363)
+=.|.++..-...-||..-
T Consensus 125 LiaGTgs~crl~~~DGs~~ 143 (336)
T KOG1794|consen 125 LIAGTGSNCRLVNPDGSEK 143 (336)
T ss_pred EEecCCceeEEECCCCCcc
Confidence 9999999888888888554
No 89
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=75.58 E-value=45 Score=28.70 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=13.3
Q ss_pred EEEEcCCCcEEEeec
Q 017944 4 AVVDAGSKLLKAGPA 18 (363)
Q Consensus 4 vViD~Gs~~~k~G~~ 18 (363)
++||+|-+++|+|+.
T Consensus 2 L~iDiGNT~ik~~~~ 16 (206)
T PF03309_consen 2 LLIDIGNTRIKWALF 16 (206)
T ss_dssp EEEEE-SSEEEEEEE
T ss_pred EEEEECCCeEEEEEE
Confidence 689999999999999
No 90
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=74.09 E-value=25 Score=31.33 Aligned_cols=48 Identities=17% Similarity=0.168 Sum_probs=36.9
Q ss_pred hhcccCCCeEEEecchhhhhccC-------CCceEEEEecCCCceEEEEeecCeec
Q 017944 110 MFETFNISGFYSSEQAVLSLYAV-------GRISGCTVDIGHGKIDIAPVIEGAVQ 158 (363)
Q Consensus 110 lfe~~~~~~v~~~~~~~~a~~~~-------g~~tglVVDiG~~~t~v~pv~dG~~~ 158 (363)
.....+... .+.++..||.+|. .....+|||+|.+.|-...|.+|++.
T Consensus 136 ~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 136 SLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred HhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 334444445 7778888877765 35678999999999999999999875
No 91
>PRK13326 pantothenate kinase; Reviewed
Probab=72.34 E-value=53 Score=29.57 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=14.3
Q ss_pred EEEEcCCCcEEEeec
Q 017944 4 AVVDAGSKLLKAGPA 18 (363)
Q Consensus 4 vViD~Gs~~~k~G~~ 18 (363)
++||+|-+++|+|+.
T Consensus 9 L~IDiGNT~ik~glf 23 (262)
T PRK13326 9 LIIDIGNTSISFALY 23 (262)
T ss_pred EEEEeCCCeEEEEEE
Confidence 689999999999999
No 92
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=67.57 E-value=4 Score=38.56 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=20.0
Q ss_pred hcCeEEccCcccccchHHHHHhhh
Q 017944 277 LENTVLCGGTTSMTGFEDRFQKEA 300 (363)
Q Consensus 277 ~~nIvl~GG~s~l~G~~~rL~~eL 300 (363)
...|++|||++.-+-|.+||++.|
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l 308 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERL 308 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-
T ss_pred CceEEEECCCcCCHHHHHHHHhhC
Confidence 357999999999999999999999
No 93
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=64.70 E-value=46 Score=30.22 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=37.9
Q ss_pred HHHHhhcccCCCeEEEecchhhhhccC------CCceEEEEecCCCceEEEEeecCeeccc
Q 017944 106 LVQLMFETFNISGFYSSEQAVLSLYAV------GRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (363)
Q Consensus 106 l~e~lfe~~~~~~v~~~~~~~~a~~~~------g~~tglVVDiG~~~t~v~pv~dG~~~~~ 160 (363)
+.+.+-+.+++| |++.++.-+++++- +..+.+.|.+|. ..-...|.||+++..
T Consensus 88 l~~~l~~~~~~p-v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~-GiG~giv~~G~~~~G 146 (291)
T PRK05082 88 LVQTLEQLTDLP-TIALNDAQAAAWAEYQALPDDIRNMVFITVST-GVGGGIVLNGKLLTG 146 (291)
T ss_pred hHHHHHHHhCCC-EEEECcHHHHHHHHHHhcCCCCCCEEEEEECC-CcceEEEECCEEeeC
Confidence 333444567887 88999888887642 346789999996 466777788988764
No 94
>PRK00292 glk glucokinase; Provisional
Probab=62.85 E-value=72 Score=29.36 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=33.9
Q ss_pred HHhhcccCCCeEEEecchhhhhccC-------------CC----ceEEEEecCCCceEEEEeecC
Q 017944 108 QLMFETFNISGFYSSEQAVLSLYAV-------------GR----ISGCTVDIGHGKIDIAPVIEG 155 (363)
Q Consensus 108 e~lfe~~~~~~v~~~~~~~~a~~~~-------------g~----~tglVVDiG~~~t~v~pv~dG 155 (363)
+.+-+.+++|.|.+.++.-+++++- ++ .+.++|-+|.+ .-...|.+|
T Consensus 84 ~~l~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG-iG~giv~~g 147 (316)
T PRK00292 84 AAMKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG-LGVAGLVPV 147 (316)
T ss_pred HHHHHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc-ceEEEEEec
Confidence 3444567998899999999999874 22 56788888875 555556666
No 95
>PRK13329 pantothenate kinase; Reviewed
Probab=60.53 E-value=1.1e+02 Score=27.32 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=16.0
Q ss_pred CccEEEEcCCCcEEEeec
Q 017944 1 MEAAVVDAGSKLLKAGPA 18 (363)
Q Consensus 1 m~~vViD~Gs~~~k~G~~ 18 (363)
|-.++||.|-+.+|.++.
T Consensus 1 ~m~LliD~GNTriKw~~~ 18 (249)
T PRK13329 1 MTFLAIDVGNTRLKWGLY 18 (249)
T ss_pred CCEEEEEcCcchheeeEe
Confidence 446899999999999998
No 96
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=60.03 E-value=8 Score=39.73 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=26.3
Q ss_pred hhccCCCce--EEEEecCCCceEEEEeecCeeccc
Q 017944 128 SLYAVGRIS--GCTVDIGHGKIDIAPVIEGAVQHI 160 (363)
Q Consensus 128 a~~~~g~~t--glVVDiG~~~t~v~pv~dG~~~~~ 160 (363)
|+|-+|..+ ++++|+|+.+|+++-+.+|.+...
T Consensus 269 Aa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe~~ 303 (674)
T COG0145 269 AAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPEIS 303 (674)
T ss_pred HHHhcccccCCEEEEEcCCcceeeeeeecCcEEee
Confidence 344446666 999999999999999998877543
No 97
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=59.02 E-value=11 Score=34.42 Aligned_cols=53 Identities=9% Similarity=-0.100 Sum_probs=39.2
Q ss_pred HHHHhhcccCCCeEEEecchhhhhccC-------CCceEEEEecCCCceEEEEeecCeeccc
Q 017944 106 LVQLMFETFNISGFYSSEQAVLSLYAV-------GRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (363)
Q Consensus 106 l~e~lfe~~~~~~v~~~~~~~~a~~~~-------g~~tglVVDiG~~~t~v~pv~dG~~~~~ 160 (363)
+.+.+-+.+++| |.+.++.-+++++- +..+.+.|.+|. .+-...|.||.++..
T Consensus 88 l~~~l~~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gt-GiG~giv~~G~l~~G 147 (303)
T PRK13310 88 LRADLSARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGT-GVGGGLVFNGKPISG 147 (303)
T ss_pred HHHHHHHHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecC-ceEEEEEECCEEeeC
Confidence 444444667887 88999988877542 346788999998 467788889988764
No 98
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=55.57 E-value=1.1e+02 Score=30.10 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCC---CHHHHHHHHHHhhcccCC--------CeEEEecc-------hhh
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCS---PKAVREQLVQLMFETFNI--------SGFYSSEQ-------AVL 127 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~---~~~~r~~l~e~lfe~~~~--------~~v~~~~~-------~~~ 127 (363)
+.+..+++.+-. +...+.-.+.||.|-...-+ +..+.+++.+.+-..+.. ..+.++.. .++
T Consensus 65 ~~l~pLlefA~~-~IPk~~h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~ 143 (501)
T KOG1386|consen 65 VYLTPLLEFAKE-HIPKEKHKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIA 143 (501)
T ss_pred HHHHHHHHHHHh-hCCHhhcCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHH
Confidence 456667766632 22222225678888776654 556677777776554442 22233221 133
Q ss_pred hhccCC-----------CceEEEEecCCCceEEEEeec
Q 017944 128 SLYAVG-----------RISGCTVDIGHGKIDIAPVIE 154 (363)
Q Consensus 128 a~~~~g-----------~~tglVVDiG~~~t~v~pv~d 154 (363)
+-|..| +.|-=.+|+|+++|+|+=+..
T Consensus 144 ~NY~LG~f~~~~~~~~~~~T~G~lDlGGAS~QItFe~~ 181 (501)
T KOG1386|consen 144 ANYLLGRFGKKNRWDSRKETFGALDLGGASTQITFEPP 181 (501)
T ss_pred HHHHHHhccccCcccCCcceeeeEecCCceeEEEEecC
Confidence 444333 345557999999999985543
No 99
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=55.17 E-value=34 Score=28.85 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=34.4
Q ss_pred EEEEcCCCcEEEeecCCCCC-CceecccceeeccCCCccccCcccccCCceeccccCCeecCHHHHHHHHHHHHhh
Q 017944 4 AVVDAGSKLLKAGPAIPDQA-PSMVIPSQMKRVLEDGSSSVDNSTLVEDVTVDPVVRGFIRDWDAMEDLLHHVLYA 78 (363)
Q Consensus 4 vViD~Gs~~~k~G~~~ge~~-P~~~~ps~~~~~~~~~~~g~~~~~~~~~~~~~p~~~g~i~~~~~~~~i~~~~~~~ 78 (363)
+.||+||+.+|+-.+ .... -.+.+=. +| .. ...-+++|.|.|.+.+.+-++.++.+
T Consensus 2 ~~lDIGs~~ik~vv~-~~~~~~~~~i~g----------~~-~~-------~s~gi~~G~I~d~~~~~~~I~~ai~~ 58 (187)
T smart00842 2 VGLDIGTSKIKALVA-EVDEDGEINVIG----------VG-EV-------PSRGIRKGVIVDIEAAARAIREAVEE 58 (187)
T ss_pred EEEEeccceEEEEEE-EEcCCCCEEEEE----------EE-Ee-------cCCCccCcEEECHHHHHHHHHHHHHH
Confidence 579999999997555 1111 1111100 11 00 02347899999999998888888754
No 100
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=54.39 E-value=13 Score=27.44 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=16.5
Q ss_pred CccEEEEcCCCcEEEeec
Q 017944 1 MEAAVVDAGSKLLKAGPA 18 (363)
Q Consensus 1 m~~vViD~Gs~~~k~G~~ 18 (363)
|+.+.||+|...+++|+.
T Consensus 1 ~~ilgiD~Ggt~i~~a~~ 18 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVV 18 (99)
T ss_pred CcEEEEccCCCeEEEEEE
Confidence 778899999999999988
No 101
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=53.72 E-value=81 Score=27.70 Aligned_cols=50 Identities=10% Similarity=0.119 Sum_probs=32.7
Q ss_pred CCCceEEEEecCCCceEEEEeecCeecccceEEeeccHHHHHHHHHHHHhc
Q 017944 132 VGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGK 182 (363)
Q Consensus 132 ~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~ 182 (363)
+|..+.+|+-+.++.|+|+...+.+---- -..++++=-.+-..+.+.|+-
T Consensus 121 TgA~nPvvLYvSGGNTQvIAYse~rYrIF-GETlDIAvGNClDRFAR~lkl 170 (336)
T KOG2708|consen 121 TGAQNPVVLYVSGGNTQVIAYSEKRYRIF-GETLDIAVGNCLDRFARVLKL 170 (336)
T ss_pred ccCCCCEEEEEeCCceEEEEEccceeeee-cceehhhhhhhHHHHHHHhcC
Confidence 45677899999999999999988754321 134565533444455666654
No 102
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=53.70 E-value=82 Score=28.30 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=29.4
Q ss_pred EEEecchhhhhccCC----CceEEEEecCCCceEEEEeecCeec
Q 017944 119 FYSSEQAVLSLYAVG----RISGCTVDIGHGKIDIAPVIEGAVQ 158 (363)
Q Consensus 119 v~~~~~~~~a~~~~g----~~tglVVDiG~~~t~v~pv~dG~~~ 158 (363)
..+.++-.++.++.- -.-++|||+|.+.|....|-++++.
T Consensus 207 av~mDskfaav~gal~dpaa~palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPAADPALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred EEEEcchhHhhhhcccCcccCceEEEEccCCceEEEEecCCeEE
Confidence 455556566655543 2467999999999999999888764
No 103
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=53.65 E-value=19 Score=32.71 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh-ccCCCCcceEEeCCCCCCCcCCcceeeeechhhh
Q 017944 256 GIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAIL 334 (363)
Q Consensus 256 ~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL-~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~ 334 (363)
.|...+.+.+.-+++ +.|||.|+.+..+-|.+++++.+ +. +...++.+..... ...++-+||+.+
T Consensus 220 ~la~~l~~l~~~~dp-------e~IvlgG~~~~~~~~~~~i~~~l~~~-~~~~~~~i~~s~~------~~~~~~~GAa~~ 285 (291)
T PRK05082 220 AIARLIADLKATLDC-------QCVVLGGSVGLAEGYLELVQAYLAQE-PAIYHVPLLAAHY------RHDAGLLGAALW 285 (291)
T ss_pred HHHHHHHHHHHHhCC-------CEEEEcCccccHHHHHHHHHHHHHhc-ccccCCeEEECcc------CCchhhhhHHHH
Confidence 366777777777766 45888888777777778888777 43 2111334433332 346677788876
Q ss_pred h
Q 017944 335 A 335 (363)
Q Consensus 335 a 335 (363)
+
T Consensus 286 ~ 286 (291)
T PRK05082 286 A 286 (291)
T ss_pred h
Confidence 5
No 104
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=52.32 E-value=25 Score=30.83 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=29.6
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 83 EEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 83 ~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
.. +++||+|+.-...+.++.+++++++-+.||-
T Consensus 85 ~~-S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (229)
T cd08627 85 VT-SEYPIILSIEDHCSIVQQRNMAQHFKKVFGD 117 (229)
T ss_pred cC-CCCCEEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 44 7899999999999999999999999998874
No 105
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=50.86 E-value=26 Score=31.32 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
|.++.|=+++| .. +++||+|+.-...+.++.+++++++-+.||-
T Consensus 76 dv~~aI~~~AF------~~-s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 119 (257)
T cd08626 76 DVIQAIKDTAF------VT-SDYPVILSFENHCSKPQQYKLAKYCEEIFGD 119 (257)
T ss_pred HHHHHHHHHhc------cc-CCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 44555555555 33 7899999999999999999999999988873
No 106
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=50.80 E-value=14 Score=35.08 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=21.4
Q ss_pred cCeEEccCcccccchHHHHHhhh
Q 017944 278 ENTVLCGGTTSMTGFEDRFQKEA 300 (363)
Q Consensus 278 ~nIvl~GG~s~l~G~~~rL~~eL 300 (363)
+.|++|||++.-|-|.+||++.|
T Consensus 288 ~~vlv~GGGa~N~~Lm~~L~~~l 310 (365)
T PRK09585 288 DELLVCGGGARNPTLMERLAALL 310 (365)
T ss_pred CEEEEECCCcchHHHHHHHHHhc
Confidence 35999999999999999999988
No 107
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=49.72 E-value=28 Score=31.09 Aligned_cols=43 Identities=7% Similarity=0.176 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccC
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~ 115 (363)
|.++.|=+++| .. +++||+|+.-...+.++.+++++++-+.||
T Consensus 74 dv~~~I~~~AF------~~-S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~G 116 (254)
T cd08596 74 DVVEAINRSAF------IT-SDYPVILSIENHCSLQQQRKMAEIFKTVFG 116 (254)
T ss_pred HHHHHHHHHhc------cC-CCCCEEEEecccCCHHHHHHHHHHHHHHHh
Confidence 34444444554 34 789999999999999999999999998887
No 108
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=49.09 E-value=29 Score=31.08 Aligned_cols=44 Identities=5% Similarity=0.086 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
|.++.|=+++| .. +++||+|+.....+.++.+++++++-+.||-
T Consensus 74 ~v~~~I~~~AF------~~-s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd 117 (258)
T cd08630 74 DVIQAVRQHAF------TA-SPYPVILSLENHCGLEQQAAMARHLQTILGD 117 (258)
T ss_pred HHHHHHHHHhc------cC-CCCCEEEEeeccCCHHHHHHHHHHHHHHHhh
Confidence 34455545554 34 7899999999999999999999999998874
No 109
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=48.56 E-value=30 Score=30.30 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
|.++.|=+++| .. +++||+|+.....+.++.+++++++-+.||-
T Consensus 74 dv~~aI~~~AF------~~-s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (227)
T cd08594 74 DVIETINKYAF------IK-NEYPVILSIENHCSVQQQKKMAQYLKEILGD 117 (227)
T ss_pred HHHHHHHHhhc------cC-CCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 34444444444 34 7899999999999999999999999988873
No 110
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=48.17 E-value=30 Score=30.98 Aligned_cols=43 Identities=0% Similarity=0.006 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 67 AMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 67 ~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
.++.|=+++| .. +++||+|+.....+.++.+++++++-+.||-
T Consensus 75 v~~~I~~~AF------~~-S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 75 VLRAIRDYAF------KA-SPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred HHHHHHHHhc------cC-CCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 3444444444 34 7899999999999999999999999988873
No 111
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=47.55 E-value=30 Score=31.00 Aligned_cols=44 Identities=5% Similarity=0.045 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
|.++.|=+++| .. +++||+|+.....+.++.+++++++-|.||-
T Consensus 74 ~v~~~I~~~aF------~~-s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 74 DVIQAIREYAF------KV-SPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHhc------cC-CCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 34455545444 34 7899999999999999999999999988874
No 112
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=46.99 E-value=32 Score=30.29 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
|.++.|=+++| .. +++||+|+.....+.++.+++++++-+.||-
T Consensus 74 dv~~~Ik~~aF------~~-s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 74 DVCRAIKKYAF------VT-SPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHHhc------cC-CCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 34455555554 34 7899999999999999999999999988874
No 113
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=46.91 E-value=31 Score=30.88 Aligned_cols=31 Identities=6% Similarity=0.061 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 86 NEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 86 ~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
+++||+|+.....+.++.+++++++-|.||-
T Consensus 87 s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lGd 117 (258)
T cd08631 87 SDYPVILSLENHCGVEQQQTMAQHLTEILGE 117 (258)
T ss_pred CCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999988873
No 114
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=46.71 E-value=34 Score=30.52 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
|.++.|=+++| .. +++||+|+.-...+.++.+++++++-+.||-
T Consensus 74 dv~~aI~~~AF------~~-S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (253)
T cd08632 74 DVIETINKYAF------VK-NEFPVILSIENHCSIQQQKKIAQYLKEIFGD 117 (253)
T ss_pred HHHHHHHHHhc------cC-CCCCEEEEecccCCHHHHHHHHHHHHHHHhh
Confidence 34444545544 34 7899999999999999999999999988873
No 115
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=46.65 E-value=34 Score=30.03 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
|.++.|=+++| .. +++||+|+.....+.++.+++++++-+.||-
T Consensus 74 dv~~~Ik~~aF------~~-s~yPvILslE~Hcs~~qQ~~ma~~l~~~lGd 117 (226)
T cd08558 74 DVIEAIKEYAF------VT-SPYPVILSLENHCSLEQQKKMAQILKEIFGD 117 (226)
T ss_pred HHHHHHHHHhc------cc-CCCCeEEEEecCCCHHHHHHHHHHHHHHHhh
Confidence 44555555555 33 7899999999999999999999999988874
No 116
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=46.60 E-value=33 Score=30.14 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
|.++.|=+++| .. +++||||+.....+.++.+++++++-+.||-
T Consensus 74 dv~~~I~~~aF------~~-s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 117 (229)
T cd08592 74 DVLKTIKEHAF------VT-SEYPVILSIENHCSLPQQRNMAQAFKEVFGD 117 (229)
T ss_pred HHHHHHHHHhc------cC-CCCCEEEEEecCCCHHHHHHHHHHHHHHHhH
Confidence 33444444444 34 7899999999999999999999999988873
No 117
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=46.52 E-value=32 Score=30.73 Aligned_cols=44 Identities=5% Similarity=0.132 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
|.++.|=+++| .. +++||+|+.....+.++..++++++-|.||-
T Consensus 74 ~v~~~I~~~AF------~~-s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd 117 (257)
T cd08595 74 EVITTVEKYAF------EK-SDYPVVLSLENHCSTEQQEIMAHYLVSILGE 117 (257)
T ss_pred HHHHHHHHHhc------cC-CCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 34444544444 34 7899999999999999999999999988873
No 118
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=45.89 E-value=35 Score=30.44 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
|.++.|=+|+| .. +++||+|+.....+.++.+++++++-|.||-
T Consensus 74 ~v~~~I~~~AF------~~-s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08633 74 DVIETINKYAF------IK-NEYPVILSIENHCSVPQQKKMAQYLTEILGD 117 (254)
T ss_pred HHHHHHHHHhc------cC-CCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 34455555554 34 7899999999999999999999999988873
No 119
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=45.78 E-value=11 Score=31.80 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=35.0
Q ss_pred hcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhcc
Q 017944 277 LENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 337 (363)
Q Consensus 277 ~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l 337 (363)
.+.|+++||.++-+-+.+.+.+-+ +.++.+... ...+-.||+++|..
T Consensus 150 ~~~i~~~GG~~~n~~~~q~~Advl-----~~~V~~~~~---------~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 150 IRRIRVSGGGAKNPLWMQILADVL-----GRPVVRPEV---------EEASALGAALLAAV 196 (198)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHH-----TSEEEEESS---------STHHHHHHHHHHHH
T ss_pred ceeeEeccccccChHHHHHHHHHh-----CCceEeCCC---------CchHHHHHHHHHHh
Confidence 467999999999999999988877 235555443 24567888888753
No 120
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=44.96 E-value=35 Score=30.51 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
+.++.|=+++| .. +++||||+.-...+.++.+++++++-+.||-
T Consensus 76 ~v~~aIk~~AF------~~-s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 119 (257)
T cd08591 76 DVIEAIAETAF------KT-SEYPVILSFENHCSSKQQAKMAEYCREIFGD 119 (257)
T ss_pred HHHHHHHHHhc------cC-CCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 33444444444 34 7899999999999999999999999988873
No 121
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=43.51 E-value=38 Score=30.42 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
|.++.|=+++| .. +++||||+.....+.++.+++++++-+.||-
T Consensus 74 dv~~~I~~~aF------~~-s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG~ 117 (260)
T cd08597 74 SVIEAINEYAF------VA-SEYPLILCIENHCSEKQQLVMAQYLKEIFGD 117 (260)
T ss_pred HHHHHHHHHhc------cC-CCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 34444544544 34 7899999999999999999999999988874
No 122
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.36 E-value=45 Score=25.11 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=37.9
Q ss_pred eEEccCccccc--chHHHHHhhh-ccCC-CCcceEEeCCCCCCCcCCcceeeeechhhhhccCCCCceeeeh
Q 017944 280 TVLCGGTTSMT--GFEDRFQKEA-GLCS-SAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITK 347 (363)
Q Consensus 280 Ivl~GG~s~l~--G~~~rL~~eL-~~~~-~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l~~~~~~~itk 347 (363)
++.-=|+..+| ||..|.-+-| ..-. .-.-++|..+++ .=.|-.-+|+.++|+++||.-
T Consensus 18 vLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~e----------iR~~lk~~s~WPT~PQLyi~G 79 (105)
T COG0278 18 VLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPE----------IRQGLKEYSNWPTFPQLYVNG 79 (105)
T ss_pred EEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHH----------HHhccHhhcCCCCCceeeECC
Confidence 56677888888 9999999988 4432 223456666554 123444566677888888753
No 123
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=42.62 E-value=41 Score=30.07 Aligned_cols=44 Identities=11% Similarity=0.217 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
|.++.|=+++| .. +++||+|+.-...+.++.+++++++-+.||-
T Consensus 74 dv~~~I~~~AF------~~-s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08628 74 DVVQAIKDHAF------VT-SEYPVILSIEEHCSVEQQRHMAKVFKEVFGD 117 (254)
T ss_pred HHHHHHHHHhc------cC-CCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 34455555554 34 7899999999999999999999999888874
No 124
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=42.12 E-value=3e+02 Score=25.93 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.3
Q ss_pred eEEEEecCCCceEEEEeecCeecccc
Q 017944 136 SGCTVDIGHGKIDIAPVIEGAVQHIA 161 (363)
Q Consensus 136 tglVVDiG~~~t~v~pv~dG~~~~~~ 161 (363)
+-+++.+|.+.. ++.|.||+++..+
T Consensus 175 ~~I~~hLGtGig-~~ai~~Gk~vdgs 199 (351)
T TIGR02707 175 NLIVAHMGGGIS-VAAHRKGRVIDVN 199 (351)
T ss_pred CEEEEEeCCCce-eeeEECCEEEEcC
Confidence 789999999765 9999999998654
No 125
>PRK03011 butyrate kinase; Provisional
Probab=40.88 E-value=20 Score=33.93 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=22.1
Q ss_pred CceEEEEecCCCceEEEEeecCeecccc
Q 017944 134 RISGCTVDIGHGKIDIAPVIEGAVQHIA 161 (363)
Q Consensus 134 ~~tglVVDiG~~~t~v~pv~dG~~~~~~ 161 (363)
..+.+++.+|.+. .++.+.||+++..+
T Consensus 175 ~~n~I~~hLGtGi-g~gai~~Gk~idgs 201 (358)
T PRK03011 175 ELNLIVAHLGGGI-SVGAHRKGRVIDVN 201 (358)
T ss_pred cCcEEEEEeCCCc-eeeEEECCEEEecC
Confidence 3488999999965 78899999998653
No 126
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=39.52 E-value=1.3e+02 Score=28.47 Aligned_cols=156 Identities=14% Similarity=0.042 Sum_probs=76.8
Q ss_pred cchhhhhccCCCceEEEEecCCCceEEEEeecCeecccceEEeeccHHHHHHHHHHHHhccCCCc--------cccHHHH
Q 017944 123 EQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV--------NLSLYDV 194 (363)
Q Consensus 123 ~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~--------~~~~~~~ 194 (363)
+.--.++++....+.+|+++|+ ...++.+-.|.++-. -..--|-.-++..+.++..+ -|+- .++...+
T Consensus 151 PA~H~Al~~~~~~~r~vlNiGG-IaNlt~l~~~~~v~g--~DtGPgN~llD~wi~~~~g~-~yD~~g~~A~~G~v~~~ll 226 (371)
T COG2377 151 PAFHAALARAPRERRAVLNIGG-IANLTYLPPGGPVLG--FDTGPGNMLLDAWIQAHGGK-PYDKDGAWAASGKVDEALL 226 (371)
T ss_pred hhhhhHhhcCCCCCeEEEeccc-eEEEEecCCCCceee--eecCCcchHHHHHHHHhhCC-CcCcCcchhhcCCcCHHHH
Confidence 3333455556678899999998 788888888876532 11233445566666666553 2221 3455566
Q ss_pred HHHHHHcccccCCHHHHHHhcccCCCceeECCCCcEEEEeceeccccccccCCCCCCcccccHHHHHHHHHHcCChhHHH
Q 017944 195 EKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHR 274 (363)
Q Consensus 195 ~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~~i~~~~~~~r~ 274 (363)
+.+...-.|....++.. .-..|.+. .+....-...+ .++. .-...|.++...+|-+--. ..+
T Consensus 227 ~~ll~~p~F~~~~PkSt-------gRe~F~~~-----wl~~~~~~~~~--l~a~---Dv~aTL~eltA~tIv~s~~-~~~ 288 (371)
T COG2377 227 ARLLAHPYFALPAPKST-------GRELFNLQ-----WLEQHLDDTQL--LNAE---DVQATLVELTAATIVKSVA-TLQ 288 (371)
T ss_pred HHHhhCCcccCCCcccC-------Cccccchh-----hHHHHHhhccC--CCHH---HHHHHHHHHHHHHHHHHHh-hcc
Confidence 66654432222111100 00000000 00000000000 0010 0123445444444433111 223
Q ss_pred HhhcCeEEccCcccccchHHHHHhhh
Q 017944 275 QLLENTVLCGGTTSMTGFEDRFQKEA 300 (363)
Q Consensus 275 ~l~~nIvl~GG~s~l~G~~~rL~~eL 300 (363)
..-+..++|||+..-|=+.+||..-+
T Consensus 289 ~~p~~l~vcGGG~~N~llm~rLa~l~ 314 (371)
T COG2377 289 GDPRRLVVCGGGRRNPLLMARLAALL 314 (371)
T ss_pred CCCceeEeecCCccCHHHHHHHHHhc
Confidence 33467999999999999999988766
No 127
>PRK09698 D-allose kinase; Provisional
Probab=39.35 E-value=48 Score=30.24 Aligned_cols=53 Identities=21% Similarity=0.153 Sum_probs=37.2
Q ss_pred HHHHhhcccCCCeEEEecchhhhhccC------CCceEEEEecCCCceEEEEeecCeeccc
Q 017944 106 LVQLMFETFNISGFYSSEQAVLSLYAV------GRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (363)
Q Consensus 106 l~e~lfe~~~~~~v~~~~~~~~a~~~~------g~~tglVVDiG~~~t~v~pv~dG~~~~~ 160 (363)
+.+.+-+.+++| +.+.+..-+++++- +..+.+.|.+|.+ .-...|.+|.++..
T Consensus 96 l~~~l~~~~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG-IG~giv~~G~~~~G 154 (302)
T PRK09698 96 LADKLENTLNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG-MGFAVWMNGAPWTG 154 (302)
T ss_pred HHHHHHHHhCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc-eEEEEEECCEEeeC
Confidence 444444667887 88888887776532 3457888999975 66677789988754
No 128
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=39.27 E-value=41 Score=24.78 Aligned_cols=49 Identities=16% Similarity=0.384 Sum_probs=32.8
Q ss_pred cCCeecCHHHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhccc
Q 017944 58 VRGFIRDWDAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETF 114 (363)
Q Consensus 58 ~~g~i~~~~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~ 114 (363)
..|++.|+..++..++.+... + ++..+.-.+++. ...-|.+++.+++.+
T Consensus 42 ~~g~v~Df~~lk~~~~~i~~~-l------Dh~~Lne~~~~~-~pT~E~ia~~i~~~l 90 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVVDR-L------DHALLNDVPGLE-NPTAENLARWIYDRL 90 (92)
T ss_pred CccEEEEHHHHHHHHHHHHHh-C------CCcEeeCCCCCC-CCCHHHHHHHHHHHH
Confidence 479999999999999876532 2 344444444442 224678888888765
No 129
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=38.88 E-value=49 Score=29.72 Aligned_cols=44 Identities=9% Similarity=0.135 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCC-CHHHHHHHHHHhhcccCC
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCS-PKAVREQLVQLMFETFNI 116 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~-~~~~r~~l~e~lfe~~~~ 116 (363)
|.++.|=+++| .. +++||+|+.-... +.++.+++++++-+.||-
T Consensus 76 dv~~~I~~~AF------~~-s~yPvIlslE~Hc~s~~qQ~~ma~~l~~~lGd 120 (261)
T cd08624 76 DAIEAIAESAF------KT-SPYPVILSFENHVDSPKQQAKMAEYCRTIFGD 120 (261)
T ss_pred HHHHHHHHHhc------cC-CCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 34444545554 34 7899999988777 688899999999998874
No 130
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.49 E-value=34 Score=30.61 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=26.1
Q ss_pred CccEEEEcCCCcEEEeecCC--CCCCceeccccee
Q 017944 1 MEAAVVDAGSKLLKAGPAIP--DQAPSMVIPSQMK 33 (363)
Q Consensus 1 m~~vViD~Gs~~~k~G~~~g--e~~P~~~~ps~~~ 33 (363)
|+.+++|+|..+.-+-+..+ |+.|+++.||...
T Consensus 1 mkila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~ 35 (342)
T COG4012 1 MKILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTS 35 (342)
T ss_pred CceEEEEecCCceeEEEecCCcccceeEeecCchH
Confidence 89999999999998755533 3678899998763
No 131
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=37.08 E-value=56 Score=29.30 Aligned_cols=44 Identities=9% Similarity=0.080 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCC-CHHHHHHHHHHhhcccCC
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCS-PKAVREQLVQLMFETFNI 116 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~-~~~~r~~l~e~lfe~~~~ 116 (363)
|.++.|=+++| .. +++||+|+.-... +.++.+++++++-+.||-
T Consensus 76 dv~~~I~~~AF------~~-S~yPvIlSlE~Hc~s~~qQ~~ma~~l~~~lGd 120 (258)
T cd08623 76 EVIEAIAECAF------KT-SPFPILLSFENHVDSPKQQAKMAEYCRLIFGD 120 (258)
T ss_pred HHHHHHHHHhc------cC-CCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 34455555554 34 7899999998887 588999999999998874
No 132
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=36.37 E-value=20 Score=33.67 Aligned_cols=56 Identities=14% Similarity=0.052 Sum_probs=34.9
Q ss_pred hcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhc
Q 017944 277 LENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 336 (363)
Q Consensus 277 ~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~ 336 (363)
.++++++||.+.-.-|+++|++.++- ..++++-+|-.++.......+|.|.-.+..
T Consensus 264 ~~~lvv~GGVAaN~~LR~~l~~~~~~----~~~~~~~p~~~~ctDNaaMIa~~g~~~~~~ 319 (345)
T PTZ00340 264 SNEVLIVGGVGCNLRLQEMMQQMAKE----RGGKLFAMDERYCIDNGAMIAYAGLLEYLS 319 (345)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHH----cCCEEEeCChHhhhhhHHHHHHHHHHHHHc
Confidence 46799999999999999999887721 134554444211211134557777666544
No 133
>PRK14878 UGMP family protein; Provisional
Probab=36.20 E-value=27 Score=32.49 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=21.7
Q ss_pred hcCeEEccCcccccchHHHHHhhh
Q 017944 277 LENTVLCGGTTSMTGFEDRFQKEA 300 (363)
Q Consensus 277 ~~nIvl~GG~s~l~G~~~rL~~eL 300 (363)
.++|+|+||.++-.-+.++|.+.+
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHH
Confidence 357999999999999999999888
No 134
>PF13941 MutL: MutL protein
Probab=35.82 E-value=47 Score=32.53 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHhhccc-CCC---------eEEEecchhhhh-----ccC-CCceEEEEecCCCceEEEEeecCeeccc
Q 017944 97 CSPKAVREQLVQLMFETF-NIS---------GFYSSEQAVLSL-----YAV-GRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (363)
Q Consensus 97 ~~~~~~r~~l~e~lfe~~-~~~---------~v~~~~~~~~a~-----~~~-g~~tglVVDiG~~~t~v~pv~dG~~~~~ 160 (363)
.+...-|+.+.+++.+.. +.| .--+.+.|-+.+ ++- +...-++||+|+.+|+|-.+.+|.+...
T Consensus 194 ln~~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIGGATTDVhSv~~~~~~~~ 273 (457)
T PF13941_consen 194 LNVEPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIGGATTDVHSVAEGSPEIP 273 (457)
T ss_pred cChHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEccCcccchhhhccCCcccc
Confidence 344555666666655421 222 223444444433 233 5667799999999999999998877655
Q ss_pred ce
Q 017944 161 AS 162 (363)
Q Consensus 161 ~~ 162 (363)
.+
T Consensus 274 ~~ 275 (457)
T PF13941_consen 274 GI 275 (457)
T ss_pred cc
Confidence 43
No 135
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=34.68 E-value=36 Score=30.97 Aligned_cols=47 Identities=9% Similarity=0.097 Sum_probs=32.0
Q ss_pred ccHHHHHHHHHHcCCh-hHHHHhhcCeEEccC-cccccchHHHHHhhhc
Q 017944 255 HGIVEQLVHTISTVSS-ENHRQLLENTVLCGG-TTSMTGFEDRFQKEAG 301 (363)
Q Consensus 255 ~~l~~~I~~~i~~~~~-~~r~~l~~nIvl~GG-~s~l~G~~~rL~~eL~ 301 (363)
.+|-.+|.+.|..+-. .-+..-.++|+++|| .+..|.+.+++..-+.
T Consensus 208 aSLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~ 256 (279)
T TIGR00555 208 ASLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATN 256 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHh
Confidence 3455555555544322 113344688999999 8889999999998884
No 136
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=34.22 E-value=24 Score=32.92 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=38.0
Q ss_pred HHHHhhcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhc
Q 017944 272 NHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAK 336 (363)
Q Consensus 272 ~r~~l~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~ 336 (363)
++..=.+.++++||.+.-..|+++|++..+ ...++++.+|..+.......-+|.|...+.+
T Consensus 257 l~~~~~~~lvi~GGVaaN~~LR~~l~~~~~----~~g~~~~~p~~~lCtDNaaMIA~ag~~~~~~ 317 (342)
T COG0533 257 LKHTGKKELVIAGGVAANSRLREMLEEMCK----ERGAEVYIPPLELCTDNAAMIAYAGLLRYKA 317 (342)
T ss_pred HHHhCCCEEEEeccHHHhHHHHHHHHHHHH----hcCCEEEcCChHhccchHHHHHHHHHHHHHc
Confidence 344445679999999999989988887663 1134554444322211135567777777765
No 137
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=33.98 E-value=59 Score=29.19 Aligned_cols=44 Identities=7% Similarity=0.121 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCC-CHHHHHHHHHHhhcccCC
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCS-PKAVREQLVQLMFETFNI 116 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~-~~~~r~~l~e~lfe~~~~ 116 (363)
|.++.|=+++| .. +++||||+.-... +.++++++++++-+.||-
T Consensus 76 dv~~~I~~~aF------~~-s~yPvIlslE~Hc~s~~qQ~~ma~~l~~ilGd 120 (258)
T cd08625 76 DVIEAIAESAF------KT-SPYPVILSFENHVDSAKQQAKMAEYCRSIFGD 120 (258)
T ss_pred HHHHHHHHHhc------cC-CCCCEEEEehhcCCCHHHHHHHHHHHHHHHHH
Confidence 34444544554 34 7899999998887 688999999999888774
No 138
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=33.35 E-value=22 Score=21.77 Aligned_cols=10 Identities=50% Similarity=0.750 Sum_probs=8.9
Q ss_pred eeeehHHHhh
Q 017944 343 QHITKADYDE 352 (363)
Q Consensus 343 ~~itk~ey~e 352 (363)
.|||++||+|
T Consensus 25 g~IT~eey~e 34 (40)
T PF09693_consen 25 GWITKEEYKE 34 (40)
T ss_pred CeECHHHHHH
Confidence 4999999987
No 139
>PRK00976 hypothetical protein; Provisional
Probab=32.82 E-value=52 Score=30.58 Aligned_cols=34 Identities=15% Similarity=0.001 Sum_probs=27.6
Q ss_pred hhhhccCCCceEEEEecCCCceEEEEeecCeeccc
Q 017944 126 VLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHI 160 (363)
Q Consensus 126 ~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~ 160 (363)
.+|.+-++..+-+|+|+|+ .|....|-||+++-.
T Consensus 140 ~~a~~~~~~~~fi~~diss-ntv~~~V~~gkIvgg 173 (326)
T PRK00976 140 YNAYKLFGFENFIVSDISS-NTVTLLVKDGKIVGA 173 (326)
T ss_pred HHHHhhcCCCcEEEEeccc-cEEEEEEECCEEEcc
Confidence 3344456889999999999 888999999998853
No 140
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=32.47 E-value=29 Score=33.80 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=44.0
Q ss_pred ceEEEEcCCC------CCHHHHHHHHHHhhccc-CCC---------eEEEecchhhhh-----ccCC------CceEEEE
Q 017944 88 GQILFTDPLC------SPKAVREQLVQLMFETF-NIS---------GFYSSEQAVLSL-----YAVG------RISGCTV 140 (363)
Q Consensus 88 ~~v~l~~~~~------~~~~~r~~l~e~lfe~~-~~~---------~v~~~~~~~~a~-----~~~g------~~tglVV 140 (363)
.++.++++.+ +...-|+.+.+++.+.. +.| .--+.+.|.+.. ++-+ ...-++|
T Consensus 175 ~~~~i~eNV~P~i~~ln~epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~V 254 (463)
T TIGR01319 175 IFYRITDNVLPDLDHLNPEAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILI 254 (463)
T ss_pred ceEEecCCcCCCCCCcCchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEE
Confidence 4455666654 45677888887765433 122 223344443322 2222 2356999
Q ss_pred ecCCCceEEEEeecCeec
Q 017944 141 DIGHGKIDIAPVIEGAVQ 158 (363)
Q Consensus 141 DiG~~~t~v~pv~dG~~~ 158 (363)
|+|+.+|+|-.+.+|.+-
T Consensus 255 DIGGATTDvhSv~~g~~~ 272 (463)
T TIGR01319 255 DIGGATTDVHSAAAGELS 272 (463)
T ss_pred EcCccccchhhccCCCcc
Confidence 999999999999999665
No 141
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=31.97 E-value=81 Score=27.73 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHhhcccC
Q 017944 86 NEGQILFTDPLCSPKAVREQLVQLMFETFN 115 (363)
Q Consensus 86 ~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~ 115 (363)
+++||+|+.....+.++..++++++-+.||
T Consensus 87 s~yPvILslE~hcs~~qQ~~~a~~l~~~lG 116 (228)
T cd08599 87 SEYPVIITLENHLSPELQAKAAQILRETLG 116 (228)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHHHHh
Confidence 789999999988899999999999999988
No 142
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=29.78 E-value=1.5e+02 Score=21.51 Aligned_cols=45 Identities=16% Similarity=0.026 Sum_probs=26.0
Q ss_pred EEEEecCCCceEEEEe-ecCeecccceEEeeccHHHHHHHHHHHHh
Q 017944 137 GCTVDIGHGKIDIAPV-IEGAVQHIASRRFEVGGMDLTKLLAQELG 181 (363)
Q Consensus 137 glVVDiG~~~t~v~pv-~dG~~~~~~~~~~~~GG~~l~~~l~~~l~ 181 (363)
-+-+|+|...+.++.+ .+|..+........-+...+-+.+.+++.
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~~~~~~~~~l~~~i~ 48 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLIK 48 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEecCcchHHHHHHHHHH
Confidence 4789999988888877 46666654222222233344444444444
No 143
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=29.59 E-value=25 Score=22.25 Aligned_cols=10 Identities=30% Similarity=0.537 Sum_probs=8.9
Q ss_pred eeeehHHHhh
Q 017944 343 QHITKADYDE 352 (363)
Q Consensus 343 ~~itk~ey~e 352 (363)
.|||++||+|
T Consensus 30 ~~IT~eey~e 39 (45)
T TIGR01669 30 KLITREQYKV 39 (45)
T ss_pred CccCHHHHHH
Confidence 5999999987
No 144
>PRK13328 pantothenate kinase; Reviewed
Probab=29.15 E-value=4.2e+02 Score=23.67 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=15.3
Q ss_pred ccEEEEcCCCcEEEeec
Q 017944 2 EAAVVDAGSKLLKAGPA 18 (363)
Q Consensus 2 ~~vViD~Gs~~~k~G~~ 18 (363)
=.++||+|.+.+|..+.
T Consensus 2 M~LliDiGNTriKwa~~ 18 (255)
T PRK13328 2 MILLIDAGNSRIKWAWA 18 (255)
T ss_pred cEEEEEeCccceeEEEE
Confidence 36899999999999988
No 145
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=28.35 E-value=80 Score=26.98 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHH--cCChhHHHHhhcCeEEccCcc-----------------cccchHHHHHhhh
Q 017944 255 HGIVEQLVHTIS--TVSSENHRQLLENTVLCGGTT-----------------SMTGFEDRFQKEA 300 (363)
Q Consensus 255 ~~l~~~I~~~i~--~~~~~~r~~l~~nIvl~GG~s-----------------~l~G~~~rL~~eL 300 (363)
..|.+.+.+.+. .++. ||.|||++ .+|||.+-+...=
T Consensus 52 ~~I~~aL~~a~~~~~~Dl---------IITTGGtg~g~rDvTpeAv~~l~~keipG~~e~~r~~s 107 (193)
T PRK09417 52 DLIEQTLIELVDEMGCDL---------VLTTGGTGPARRDVTPEATLAVADKEMPGFGEQMRQIS 107 (193)
T ss_pred HHHHHHHHHHhhcCCCCE---------EEECCCCCCCCCCcHHHHHHHHhCCcCCcHHHHHHHHh
Confidence 346666666553 2332 88888877 4677777665443
No 146
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=27.74 E-value=54 Score=28.53 Aligned_cols=81 Identities=15% Similarity=0.350 Sum_probs=43.9
Q ss_pred hHHHHhhcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhccCCCC--ceeee--
Q 017944 271 ENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQ--NQHIT-- 346 (363)
Q Consensus 271 ~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l~~~~--~~~it-- 346 (363)
|+-+-.-+.||++|.+|. |+.. ..++....++.++.++...- .|.=.+|+||.+++.+-.-+ ++++.
T Consensus 70 DldkyAesDvviVGAGSa--GLsA--AY~I~~~rPdlkvaIIE~SV-----aPGGGaWLGGQLFSAMvvRKPAhLFL~Ei 140 (328)
T KOG2960|consen 70 DLDKYAESDVVIVGAGSA--GLSA--AYVIAKNRPDLKVAIIESSV-----APGGGAWLGGQLFSAMVVRKPAHLFLQEI 140 (328)
T ss_pred HHHhhhccceEEECCCcc--ccce--eeeeeccCCCceEEEEEeee-----cCCCcccccchhhhhhhhcChHHHHHHHh
Confidence 344444567999987662 2211 01112223445666665432 16778999999999873222 22211
Q ss_pred hHHHhhcCccchhc
Q 017944 347 KADYDESGPSVVHR 360 (363)
Q Consensus 347 k~ey~e~G~~~~~r 360 (363)
---||++|.-++-+
T Consensus 141 gvpYedegdYVVVK 154 (328)
T KOG2960|consen 141 GVPYEDEGDYVVVK 154 (328)
T ss_pred CCCcccCCCEEEEe
Confidence 11388888766544
No 147
>PLN02952 phosphoinositide phospholipase C
Probab=26.29 E-value=98 Score=31.48 Aligned_cols=44 Identities=5% Similarity=0.113 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
|.++.|=+|+| .. +++||||+.-...+.++..++++++-+.||-
T Consensus 196 ~v~~~I~~~aF------~~-s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 239 (599)
T PLN02952 196 KCLKSIRDYAF------SS-SPYPVIITLEDHLTPDLQAKVAEMATQIFGQ 239 (599)
T ss_pred HHHHHHHHHhc------cC-CCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 34444545544 34 7899999999999999999999999888874
No 148
>PLN02230 phosphoinositide phospholipase C 4
Probab=25.44 E-value=95 Score=31.54 Aligned_cols=43 Identities=7% Similarity=0.132 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 67 AMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 67 ~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
.++.|=+|+| .. +++||||+.-...+..+..++++++-+.||-
T Consensus 188 v~~~I~~~aF------~~-s~yPvIlslE~hcs~~~Q~~~a~~~~~~~Gd 230 (598)
T PLN02230 188 CLDSIKANAF------AI-SKYPVIITLEDHLTPKLQFKVAKMITQTFGD 230 (598)
T ss_pred HHHHHHHhcc------CC-CCCCeEEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 4445544444 34 7899999999999999999999999888874
No 149
>PLN02223 phosphoinositide phospholipase C
Probab=25.30 E-value=1.1e+02 Score=30.53 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
+.++.|=+|+|.. . +++||||+.-...+.++..++++++-+.||=
T Consensus 179 ~vl~aI~~~AF~~-----s-~~yPvIlslE~Hcs~~qQ~~~A~~l~~i~Gd 223 (537)
T PLN02223 179 ECLDAIKEHAFTK-----C-RSYPLIITFKDGLKPDLQSKATQMIDQTFGD 223 (537)
T ss_pred HHHHHHHHHhhhc-----C-CCCceEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 4455555555532 2 4899999999999999999999999887773
No 150
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=24.90 E-value=53 Score=28.87 Aligned_cols=15 Identities=27% Similarity=0.182 Sum_probs=14.1
Q ss_pred EEEEcCCCcEEEeec
Q 017944 4 AVVDAGSKLLKAGPA 18 (363)
Q Consensus 4 vViD~Gs~~~k~G~~ 18 (363)
+.||+||+++|+..-
T Consensus 3 lgiDiGTts~K~~l~ 17 (245)
T PF00370_consen 3 LGIDIGTTSVKAVLF 17 (245)
T ss_dssp EEEEECSSEEEEEEE
T ss_pred EEEEEcccceEEEEE
Confidence 689999999999988
No 151
>PRK13333 pantothenate kinase; Reviewed
Probab=24.75 E-value=78 Score=27.36 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=19.5
Q ss_pred chhhhhccCCCceEEEEecCCCceEEEEeecCe
Q 017944 124 QAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGA 156 (363)
Q Consensus 124 ~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~ 156 (363)
+-++++++. ..++|||+|...| +-.+.+|.
T Consensus 75 DR~~a~~aa--~~~lVIDaGTAiT-iDvv~~g~ 104 (206)
T PRK13333 75 DRIAACYAI--EDGVVVDAGSAIT-VDIMSNGI 104 (206)
T ss_pred HHHHHhccC--CCeEEEEcCCceE-EEEEcCCc
Confidence 335556654 4799999999655 44445553
No 152
>PLN02228 Phosphoinositide phospholipase C
Probab=24.66 E-value=1.1e+02 Score=31.02 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhccCCCCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 67 AMEDLLHHVLYAGLGWEEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 67 ~~~~i~~~~~~~~l~~~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
.++.|=+|+| .. +++||||+.-...+..+..++++++-+.||-
T Consensus 180 v~~~I~~~AF------~~-s~yPvIlslE~hc~~~qQ~~~a~~~~~~lg~ 222 (567)
T PLN02228 180 CLNAIKDNAF------QV-SDYPVVITLEDHLPPNLQAQVAKMLTKTFRG 222 (567)
T ss_pred HHHHHHHhhc------cC-CCCCEEEEeecCCCHHHHHHHHHHHHHHHhH
Confidence 3444444444 34 7899999999999999999999999888774
No 153
>PLN02222 phosphoinositide phospholipase C 2
Probab=24.66 E-value=95 Score=31.44 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=29.2
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHhhcccCC
Q 017944 83 EEGNEGQILFTDPLCSPKAVREQLVQLMFETFNI 116 (363)
Q Consensus 83 ~~~~~~~v~l~~~~~~~~~~r~~l~e~lfe~~~~ 116 (363)
.. +++||||+.-...+.++..++++++-+.||-
T Consensus 187 ~~-s~yPvIlslE~Hc~~~qQ~~~a~~~~~~~g~ 219 (581)
T PLN02222 187 DV-SDYPVVVTLEDHLTPDLQSKVAEMVTEIFGE 219 (581)
T ss_pred cC-CCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 44 7899999999999999999999999888874
No 154
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=24.63 E-value=4.7e+02 Score=24.67 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=17.5
Q ss_pred cCeEEccCcccccchHHHHHhhh-ccCCCC
Q 017944 278 ENTVLCGGTTSMTGFEDRFQKEA-GLCSSA 306 (363)
Q Consensus 278 ~nIvl~GG~s~l~G~~~rL~~eL-~~~~~~ 306 (363)
.||+++||+. . .+.=|.+.| ...|+.
T Consensus 174 ~NILisGGTG--S-GKTTlLNal~~~i~~~ 200 (355)
T COG4962 174 CNILISGGTG--S-GKTTLLNALSGFIDSD 200 (355)
T ss_pred eeEEEeCCCC--C-CHHHHHHHHHhcCCCc
Confidence 5999999988 3 445555666 555543
No 155
>PF13941 MutL: MutL protein
Probab=24.53 E-value=61 Score=31.72 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=19.0
Q ss_pred cEEEEcCCCcEEEeecCC--CCCCcee
Q 017944 3 AAVVDAGSKLLKAGPAIP--DQAPSMV 27 (363)
Q Consensus 3 ~vViD~Gs~~~k~G~~~g--e~~P~~~ 27 (363)
.+++|+||.+||+-.- . +..++++
T Consensus 2 ~L~~DiGST~Tk~~l~-d~~~~~~~~i 27 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLF-DLVDGEPRLI 27 (457)
T ss_pred EEEEEeCCcceEEeEE-eccCCccEEE
Confidence 5799999999999888 4 4566654
No 156
>PRK00976 hypothetical protein; Provisional
Probab=23.35 E-value=1.1e+02 Score=28.61 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCChhHHHHhhcCeEEccCccccc--chHHHHHhhh-ccCCCCcceEEeCCCCCCCcCCcceeeeechhh
Q 017944 257 IVEQLVHTISTVSSENHRQLLENTVLCGGTTSMT--GFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAI 333 (363)
Q Consensus 257 l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~--G~~~rL~~eL-~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi 333 (363)
+...|...+.-+++ +.|+|.||.+..+ .+.+++++.+ . . +... ...+.-+||+.
T Consensus 251 LA~~IAnLi~llDP-------e~IVLGGGVS~~~e~~L~~~I~e~l~~------~--~a~L--------G~dAGaiGAA~ 307 (326)
T PRK00976 251 VAMEIASLLLLNPE-------DNVVLAGSVGEMDEPDVSERIKELLDK------K--VLVL--------GKESAAIGLAL 307 (326)
T ss_pred HHHHHHHHHHhcCC-------CEEEEcCccccCchhHHHHHHHHHhcc------c--cccc--------CCchHHHHHHH
Confidence 55555555555665 4699999999988 5666666666 2 1 1111 34677799988
Q ss_pred hhc
Q 017944 334 LAK 336 (363)
Q Consensus 334 ~a~ 336 (363)
+|.
T Consensus 308 iA~ 310 (326)
T PRK00976 308 IAR 310 (326)
T ss_pred HHH
Confidence 875
No 157
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=23.30 E-value=2e+02 Score=27.83 Aligned_cols=24 Identities=8% Similarity=0.200 Sum_probs=19.2
Q ss_pred ccccCCeecCHHHHHHHHHHHHhh
Q 017944 55 DPVVRGFIRDWDAMEDLLHHVLYA 78 (363)
Q Consensus 55 ~p~~~g~i~~~~~~~~i~~~~~~~ 78 (363)
.-+++|.|.|.+.+.+-++.++.+
T Consensus 44 ~gi~~G~I~d~~~~~~aI~~av~~ 67 (420)
T PRK09472 44 RGMDKGGVNDLESVVKCVQRAIDQ 67 (420)
T ss_pred CCccCCEEEcHHHHHHHHHHHHHH
Confidence 346799999999988888887754
No 158
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=22.90 E-value=72 Score=31.66 Aligned_cols=47 Identities=17% Similarity=0.096 Sum_probs=32.6
Q ss_pred hcCeEEccCcccccchHHHHHhhhccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhcc
Q 017944 277 LENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 337 (363)
Q Consensus 277 ~~nIvl~GG~s~l~G~~~rL~~eL~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l 337 (363)
.+.|+++||.|+-+-+.+-+..-+ +.++.+...+ .++-+||+++|..
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~-----g~pV~~~~~~---------e~~alGaAl~aa~ 453 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADIL-----GKDIVVPEMA---------ETTALGAALLAGL 453 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHh-----CCceEecCcc---------cchHHHHHHHHHh
Confidence 356999999999888877777666 2244444422 3567999998863
No 159
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=22.58 E-value=74 Score=29.83 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=41.1
Q ss_pred HHHHHHcCChhHHHHhhcCeEEccCcccccchHHHHHhhh-ccCCCCcceEEeCCCCCCCcCCcceeeeechhhhhcc
Q 017944 261 LVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV 337 (363)
Q Consensus 261 I~~~i~~~~~~~r~~l~~nIvl~GG~s~l~G~~~rL~~eL-~~~~~~~~i~v~~~~~~~~~~~~~~~~w~Gasi~a~l 337 (363)
...+|..|+ .+.+.-...|++||.+.-.-+..+|+... +.-...+ .+|...........+|.|--++-+.
T Consensus 292 t~~ai~~~~--l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i-----~Pp~~lCsDNgiMIaw~Gie~l~~~ 362 (405)
T KOG2707|consen 292 THRAIKSLL--LQPKNVKQLVISGGVASNQYIRGALEKLSAAHNCTSI-----KPPPSLCSDNGIMIAWTGIEMLRNG 362 (405)
T ss_pred HHHHHHHhh--hcccCCceEEEcCCccchHHHHHHHHHHHHhhCCccc-----cCChhhcCCcchhhhhHHHHHHhcc
Confidence 334444454 23344456799999999988888888876 4332222 2222111111467889887776544
No 160
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=21.04 E-value=88 Score=25.10 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=17.2
Q ss_pred ccccHHHHHHHHHHcCChhHHHHhhcCeEEccCccc
Q 017944 253 EAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTS 288 (363)
Q Consensus 253 ~~~~l~~~I~~~i~~~~~~~r~~l~~nIvl~GG~s~ 288 (363)
+...|.+.+.+.+..++. ||.|||++.
T Consensus 52 d~~~i~~~l~~~~~~~Dl---------iIttGG~g~ 78 (144)
T TIGR00177 52 DPEEIREILRKAVDEADV---------VLTTGGTGV 78 (144)
T ss_pred CHHHHHHHHHHHHhCCCE---------EEECCCCCC
Confidence 334567776666554443 888888775
No 161
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=20.60 E-value=82 Score=29.00 Aligned_cols=88 Identities=11% Similarity=0.080 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhccCCCCCCC-ceEEEEcCCCCCHHHHH--HHHHHhhcccCCCeEEEecch---hhhhccCC--CceE
Q 017944 66 DAMEDLLHHVLYAGLGWEEGNE-GQILFTDPLCSPKAVRE--QLVQLMFETFNISGFYSSEQA---VLSLYAVG--RISG 137 (363)
Q Consensus 66 ~~~~~i~~~~~~~~l~~~~~~~-~~v~l~~~~~~~~~~r~--~l~e~lfe~~~~~~v~~~~~~---~~a~~~~g--~~tg 137 (363)
+.+-.+++.++.+ .++++ ++ ..+.++.-|-.....|- ..++-+-..+++|-+.+-.-- .++.+.++ ....
T Consensus 50 ~~l~~~i~~~l~~-~~~~~-~did~iav~~GPG~~tglrvg~~~Ak~la~~~~~p~~~v~hl~~ha~~a~~~s~~~~~~~ 127 (305)
T TIGR00329 50 ENIPPLLERALIE-SNVDK-SEIDLIAYTQGPGLGGSLRVGATFARSLALSLDKPLIGVNHLLGHIYAPRLDTNILQFPF 127 (305)
T ss_pred HHHHHHHHHHHHH-cCCCH-HHCCEEEEecCCCchhhHHHHHHHHHHHHHHhCCCEeecccHHHHHHHhhhhcCCCCCCc
Confidence 4455566666643 55555 44 34666665555444453 445556667788866653322 22233345 3444
Q ss_pred EEEecCCCceEEEEeecC
Q 017944 138 CTVDIGHGKIDIAPVIEG 155 (363)
Q Consensus 138 lVVDiG~~~t~v~pv~dG 155 (363)
+++-+-+++|.+.-+.++
T Consensus 128 l~l~vsGG~t~l~~~~~~ 145 (305)
T TIGR00329 128 VSLLVSGGHTQIIAVKGI 145 (305)
T ss_pred EEEEEcCCceEEEEEeCC
Confidence 444333356777766655
Done!