Query 017945
Match_columns 363
No_of_seqs 186 out of 1875
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 04:48:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 3E-50 6.4E-55 367.3 42.3 356 1-359 72-432 (455)
2 PRK00187 multidrug efflux prot 100.0 2.9E-46 6.2E-51 344.2 42.0 355 2-358 66-432 (464)
3 PRK10189 MATE family multidrug 100.0 2E-45 4.3E-50 338.7 43.4 355 1-357 84-449 (478)
4 PRK09575 vmrA multidrug efflux 100.0 3.8E-44 8.2E-49 329.7 42.6 353 2-358 69-424 (453)
5 PRK01766 multidrug efflux prot 100.0 3.1E-44 6.6E-49 331.7 41.7 356 2-359 68-431 (456)
6 PRK10367 DNA-damage-inducible 100.0 1.6E-43 3.6E-48 323.0 42.5 348 2-358 66-419 (441)
7 TIGR00797 matE putative efflux 100.0 2.2E-34 4.7E-39 256.9 34.5 289 2-292 49-341 (342)
8 TIGR01695 mviN integral membra 100.0 2.3E-33 5E-38 263.0 41.8 343 8-359 63-417 (502)
9 TIGR02900 spore_V_B stage V sp 100.0 5.4E-33 1.2E-37 259.7 40.6 349 2-359 57-423 (488)
10 PRK15099 O-antigen translocase 100.0 3.7E-31 8E-36 241.8 39.1 340 2-360 59-402 (416)
11 PF03023 MVIN: MviN-like prote 100.0 3.4E-29 7.3E-34 229.2 44.0 349 2-360 34-393 (451)
12 KOG1347 Uncharacterized membra 100.0 9.2E-31 2E-35 237.4 23.7 354 1-355 84-437 (473)
13 COG0728 MviN Uncharacterized m 100.0 6E-26 1.3E-30 204.6 41.5 353 1-360 66-427 (518)
14 PRK10459 colanic acid exporter 99.9 5.2E-23 1.1E-27 192.4 39.6 318 23-359 75-394 (492)
15 COG0534 NorM Na+-driven multid 99.9 3.5E-23 7.7E-28 189.5 25.4 198 160-360 12-211 (455)
16 PRK10367 DNA-damage-inducible 99.9 9E-23 1.9E-27 186.7 26.1 197 161-359 5-201 (441)
17 PRK10189 MATE family multidrug 99.9 1.6E-22 3.5E-27 186.8 26.1 196 161-359 25-226 (478)
18 PRK00187 multidrug efflux prot 99.9 1.6E-22 3.4E-27 186.8 25.3 195 160-358 5-203 (464)
19 COG2244 RfbX Membrane protein 99.9 1.3E-20 2.9E-25 175.7 35.8 278 64-352 117-394 (480)
20 PRK09575 vmrA multidrug efflux 99.9 7.5E-22 1.6E-26 181.9 24.0 196 161-359 8-204 (453)
21 PRK01766 multidrug efflux prot 99.9 3E-21 6.6E-26 178.6 26.0 198 159-359 6-207 (456)
22 PF01554 MatE: MatE; InterPro 99.8 4E-21 8.7E-26 152.4 7.3 162 173-336 1-162 (162)
23 TIGR00797 matE putative efflux 99.8 6.5E-18 1.4E-22 150.7 23.1 184 173-359 1-186 (342)
24 PF01943 Polysacc_synt: Polysa 99.6 2.9E-12 6.4E-17 110.4 26.9 217 3-233 54-272 (273)
25 TIGR01695 mviN integral membra 99.5 6.2E-12 1.3E-16 118.3 21.0 144 2-147 280-428 (502)
26 PF13440 Polysacc_synt_3: Poly 99.4 2.3E-10 5.1E-15 97.3 26.7 210 4-233 40-251 (251)
27 KOG1347 Uncharacterized membra 99.4 1.2E-11 2.6E-16 113.1 19.0 195 161-359 24-219 (473)
28 TIGR02900 spore_V_B stage V sp 99.4 2.9E-11 6.3E-16 113.3 20.5 181 168-355 2-189 (488)
29 PF03023 MVIN: MviN-like prote 99.4 1.3E-10 2.9E-15 106.9 22.9 144 2-147 255-403 (451)
30 COG0728 MviN Uncharacterized m 99.3 1.7E-09 3.6E-14 98.8 26.1 144 2-147 289-437 (518)
31 PF01554 MatE: MatE; InterPro 99.3 4E-13 8.7E-18 106.3 2.5 112 2-113 49-162 (162)
32 PRK15099 O-antigen translocase 99.1 9E-09 2E-13 94.4 18.2 180 168-358 4-185 (416)
33 PRK10459 colanic acid exporter 99.0 4.9E-07 1.1E-11 84.9 27.4 137 5-147 268-405 (492)
34 PF04506 Rft-1: Rft protein; 98.9 4.7E-07 1E-11 84.5 23.4 295 61-358 129-458 (549)
35 COG2244 RfbX Membrane protein 98.8 9.9E-07 2.1E-11 82.6 20.3 126 2-132 270-396 (480)
36 KOG2864 Nuclear division RFT1 98.7 8.1E-05 1.7E-09 65.8 26.4 288 65-357 124-436 (530)
37 PF14667 Polysacc_synt_C: Poly 98.6 1.1E-05 2.4E-10 62.3 18.3 79 67-147 2-80 (146)
38 PF07260 ANKH: Progressive ank 98.2 0.0023 5E-08 54.4 22.0 145 51-197 116-268 (345)
39 PF07260 ANKH: Progressive ank 98.0 0.0016 3.5E-08 55.3 18.7 160 160-325 6-168 (345)
40 PF01943 Polysacc_synt: Polysa 97.9 0.0064 1.4E-07 52.0 21.3 176 169-359 3-180 (273)
41 PF13440 Polysacc_synt_3: Poly 97.8 0.0083 1.8E-07 50.7 20.2 153 190-360 10-163 (251)
42 PF14667 Polysacc_synt_C: Poly 97.8 0.00011 2.4E-09 56.7 7.7 69 289-360 2-70 (146)
43 COG4267 Predicted membrane pro 97.4 0.071 1.5E-06 46.6 28.5 274 71-360 138-436 (467)
44 PF04506 Rft-1: Rft protein; 97.3 0.013 2.7E-07 55.4 15.9 127 20-147 340-470 (549)
45 KOG2864 Nuclear division RFT1 97.1 0.088 1.9E-06 47.3 17.3 138 8-147 305-449 (530)
46 PF04505 Dispanin: Interferon- 69.4 32 0.0007 23.3 7.0 41 219-259 33-73 (82)
47 PF13347 MFS_2: MFS/sugar tran 62.8 1E+02 0.0022 28.4 10.7 26 215-240 268-293 (428)
48 KOG2468 Dolichol kinase [Lipid 61.1 78 0.0017 29.1 8.8 77 171-256 379-455 (510)
49 PF02592 DUF165: Uncharacteriz 50.0 1.1E+02 0.0024 23.3 11.8 75 5-87 13-88 (145)
50 PF06808 DctM: DctM-like trans 45.4 2.5E+02 0.0054 25.9 15.0 119 121-262 166-284 (416)
51 PRK10739 putative antibiotic t 42.7 1.8E+02 0.004 23.6 7.7 50 227-280 21-70 (197)
52 COG1738 yhhQ Uncharacterized m 42.4 2E+02 0.0044 24.0 11.8 99 6-109 69-175 (233)
53 COG4267 Predicted membrane pro 41.8 2.7E+02 0.0059 25.3 19.8 125 217-358 75-199 (467)
54 KOG2234 Predicted UDP-galactos 39.2 2.6E+02 0.0056 25.0 8.4 39 154-196 79-117 (345)
55 COG2211 MelB Na+/melibiose sym 38.4 3.5E+02 0.0075 25.5 16.0 27 88-114 143-169 (467)
56 PF10160 Tmemb_40: Predicted m 37.1 2.6E+02 0.0057 23.8 10.8 83 237-322 109-191 (261)
57 PF01914 MarC: MarC family int 36.8 2.3E+02 0.005 23.1 7.7 48 227-278 21-68 (203)
58 TIGR00427 membrane protein, Ma 36.7 2.3E+02 0.0051 23.0 7.6 51 226-280 23-73 (201)
59 PF03904 DUF334: Domain of unk 34.4 2.3E+02 0.0051 23.4 6.9 60 19-78 144-212 (230)
60 PF14184 YrvL: Regulatory prot 34.1 2E+02 0.0044 21.6 13.5 92 26-119 5-97 (132)
61 PRK11111 hypothetical protein; 34.0 2.7E+02 0.0058 23.0 7.5 48 228-279 28-75 (214)
62 PF01102 Glycophorin_A: Glycop 33.9 82 0.0018 23.3 4.0 25 123-147 67-91 (122)
63 TIGR00765 yihY_not_rbn YihY fa 33.9 2.9E+02 0.0064 23.4 16.3 13 6-18 104-116 (259)
64 TIGR00697 conserved hypothetic 30.3 3E+02 0.0066 22.4 11.8 74 6-84 46-119 (202)
65 PF03609 EII-Sor: PTS system s 30.1 3.3E+02 0.0072 22.9 17.7 64 211-274 105-169 (238)
66 PF04505 Dispanin: Interferon- 28.6 1.4E+02 0.0031 20.2 4.3 31 8-38 43-73 (82)
67 PRK10995 inner membrane protei 26.9 3.7E+02 0.0079 22.3 7.5 49 227-279 25-73 (221)
68 PF05975 EcsB: Bacterial ABC t 22.6 5.9E+02 0.013 23.2 16.9 36 17-52 89-125 (386)
69 PF13197 DUF4013: Protein of u 21.0 4.1E+02 0.0088 20.7 16.0 29 159-187 38-66 (169)
70 PHA03093 EEV glycoprotein; Pro 20.5 2.5E+02 0.0054 22.4 4.7 34 232-265 21-54 (185)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=3e-50 Score=367.34 Aligned_cols=356 Identities=25% Similarity=0.335 Sum_probs=335.7
Q ss_pred CcchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHH
Q 017945 1 MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYAL 79 (363)
Q Consensus 1 i~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~ 79 (363)
+++|+++++||++|++|+++.++..++++++.++++++.+++ +.+.++++.+++.++++.+.+.+|+++...+.|+..+
T Consensus 72 l~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~ 151 (455)
T COG0534 72 LGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALL 151 (455)
T ss_pred HHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999888877 9999999999999888999999999999999999999
Q ss_pred HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH-hc-CChhhHHHHHHHHHHHHHHHHHHHHHHhcc--cccCCC
Q 017945 80 NFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK-LG-WGLIGAAITLNLSWWLIVILQLLYIFITKS--DGAWSG 155 (363)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~ 155 (363)
+..+.+.+|+.||+|.+++.+.+++++|+++|++++++ ++ +|+.|+++||++++.+.++..+++++++++ .....+
T Consensus 152 ~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (455)
T COG0534 152 SFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKK 231 (455)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence 99999999999999999999999999999999999998 57 999999999999999999999999988853 333334
Q ss_pred CCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017945 156 FSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELG 235 (363)
Q Consensus 156 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~g 235 (363)
..+.+++.+|++++.|+|.++++..........+.+.+++|++ ++|+|+++.++.++.+++..|++++.+|+++|++|
T Consensus 232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~G 309 (455)
T COG0534 232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTV--ALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLG 309 (455)
T ss_pred ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4466788999999999999999999999999999999999954 99999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcc
Q 017945 236 AGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQ 315 (363)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~ 315 (363)
+||+|++++..+.+..+++.++.....+++++++++.++|++|+|+.+.+..++++..+..++++.+.+..+.+||.||+
T Consensus 310 a~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~ 389 (455)
T COG0534 310 AGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDA 389 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 017945 316 SLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLV 359 (363)
Q Consensus 316 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~l~ 359 (363)
|.+++.++.+.|.+.+|..|++.... +|..|+|++..+.+.+.
T Consensus 390 ~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~ 432 (455)
T COG0534 390 KIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILR 432 (455)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHH
Confidence 99999999999999999999999876 79999999997655443
No 2
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=2.9e-46 Score=344.19 Aligned_cols=355 Identities=23% Similarity=0.233 Sum_probs=324.0
Q ss_pred cchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHHH
Q 017945 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNF 81 (363)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 81 (363)
++|.++.+||++|++|+|++++..++++.+..+++++..++..+.+|+.+.++.|+|+.+.+.+|+++..++.|+..+..
T Consensus 66 ~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~ 145 (464)
T PRK00187 66 IAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFM 145 (464)
T ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999888777557799999999999999999999999999999999999
Q ss_pred HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHh----cCChhhHHHHHHHHHHHHHHHHHHHHHHhcc--cccC-C
Q 017945 82 PIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKL----GWGLIGAAITLNLSWWLIVILQLLYIFITKS--DGAW-S 154 (363)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~--~~~~-~ 154 (363)
..++++|+.|+++.+++.++++.++|+++|++++++. ++|+.|+++|+.+++....+...+++++++. +.+. +
T Consensus 146 ~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (464)
T PRK00187 146 ALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRK 225 (464)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhc
Confidence 9999999999999999999999999999999999753 4899999999999998888777666665421 1121 1
Q ss_pred CCCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017945 155 GFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNEL 234 (363)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~ 234 (363)
++.+.+++..|++++.++|.+++++.+.....+++.+++++|+ .+++++++++++..+...+..+++++..+.++|++
T Consensus 226 ~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~--~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~ 303 (464)
T PRK00187 226 GLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGS--TQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHY 303 (464)
T ss_pred cccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2224567789999999999999999999999999999999995 49999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccC--cH---HHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Q 017945 235 GAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTN--SE---AVAAETTKLSILLAITVLMNCLQPVLSGVA 309 (363)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 309 (363)
|+||.|++++..+++...+++++++.+++++.+++++.++|++ |+ |+.+.+..++++.+++.++++.+.+..+++
T Consensus 304 Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~l 383 (464)
T PRK00187 304 GAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAI 383 (464)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999964 43 788999999999999999999999999999
Q ss_pred hhcCcchhhHHHHHHHHHHhhhHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 017945 310 VGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALL 358 (363)
Q Consensus 310 ~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~l 358 (363)
|+.||+|.+++.++.+.|++++|+.|++.+.+++|+.|+|.+..+..++
T Consensus 384 rg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~ 432 (464)
T PRK00187 384 RGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLAC 432 (464)
T ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHH
Confidence 9999999999999999999999999999998899999999999776654
No 3
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=2e-45 Score=338.68 Aligned_cols=355 Identities=16% Similarity=0.168 Sum_probs=324.3
Q ss_pred CcchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhC--CChHHHHHHHHHHHHHhhHHHHH
Q 017945 1 MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFG--ETAEISNAAGKFALWMLPQLFAY 77 (363)
Q Consensus 1 i~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~l~i~~~~~~~~ 77 (363)
+++|.+++++|++|++|+|++++..++++.+..+++++.+++ +.+.+++.++++ .|+|+.+.+.+|+++..++.|+.
T Consensus 84 l~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~ 163 (478)
T PRK10189 84 IDLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAA 163 (478)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999988877 788889999984 68999999999999999999999
Q ss_pred HHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHh----cCChhhHHHHHHHHHHHHHHHHHHHHHHh-cc--c
Q 017945 78 ALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKL----GWGLIGAAITLNLSWWLIVILQLLYIFIT-KS--D 150 (363)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~-~~--~ 150 (363)
.+....++++|+.||++.++..++...++|++++++++++. ++|+.|+++|+.+++.+..+...++.+++ +. +
T Consensus 164 ~~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~ 243 (478)
T PRK10189 164 AITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALR 243 (478)
T ss_pred HHHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccce
Confidence 99999999999999999999999999999999999999853 78999999999999999988876666543 21 2
Q ss_pred ccCCC-CCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017945 151 GAWSG-FSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVR 229 (363)
Q Consensus 151 ~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~ 229 (363)
.++++ +.+.+++.+|++++.|.|..++...........+.+++++|+ .++|+++++.++.++..++..|++++.+|+
T Consensus 244 ~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~--~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~l 321 (478)
T PRK10189 244 ISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGT--SVIAGNFIAFSIAALINLPGNALGSASTII 321 (478)
T ss_pred eeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 222457889999999999999999888888888888999995 499999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Q 017945 230 VSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVA 309 (363)
Q Consensus 230 is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 309 (363)
++|++|++|.|++|+..+++.+.+++.+...+++++.+++++.++|++|+|+.+.+..++++.++..++++.+.+..+.+
T Consensus 322 vg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~l 401 (478)
T PRK10189 322 TGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGL 401 (478)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcchhhHHHHHHHHHHhhhHHHHHHHHhcCCCchHHHHHHHHHHH
Q 017945 310 VGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLAL 357 (363)
Q Consensus 310 ~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~ 357 (363)
||.||++.+++.++.+.|++.+|+.|++....++|+.|+|++..+...
T Consensus 402 rg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~ 449 (478)
T PRK10189 402 KGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWA 449 (478)
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888999999998865443
No 4
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=3.8e-44 Score=329.66 Aligned_cols=353 Identities=16% Similarity=0.183 Sum_probs=322.6
Q ss_pred cchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHH
Q 017945 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (363)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 80 (363)
+.|.++.++|++|++|+|+.++..++++.+..+++++..++ ..+.+++.++++.|++..+.+.+|+++..++.|+..+.
T Consensus 69 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~ 148 (453)
T PRK09575 69 GMGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGA 148 (453)
T ss_pred hccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999999999999999999999988887 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhcccccCC-CCCHH
Q 017945 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWS-GFSWL 159 (363)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 159 (363)
....+.+|+.|+++.++..++.+.++|+++++++++.+++|+.|+++|+.+++.+.++..+++.++++.+.+++ +..+.
T Consensus 149 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (453)
T PRK09575 149 IALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRF 228 (453)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCc
Confidence 99999999999999999999999999999999999888899999999999999999998877776653322221 12234
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 017945 160 AFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNA 239 (363)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~g~~~~ 239 (363)
+++..|++++.|.|..+++..........+.+.+++|+ +.++|+++++.++..+..++..|++++..|.+||++|+||+
T Consensus 229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~ 307 (453)
T PRK09575 229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQY 307 (453)
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCh
Confidence 56789999999999999999999999998999999985 34799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccC-cHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchhh
Q 017945 240 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTN-SEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLV 318 (363)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 318 (363)
|++++..+++.++++..+++.+++++.+++++.++|++ |||+.+.+.+++++..++.++++...+..+.+|+.||++.+
T Consensus 308 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~ 387 (453)
T PRK09575 308 DNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKA 387 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999999999999999999999999999995 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 017945 319 AYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALL 358 (363)
Q Consensus 319 ~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~l 358 (363)
+..++.. +.+++|..+++... +|+.|+|++..+...+
T Consensus 388 ~~~~~~~-~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~ 424 (453)
T PRK09575 388 LFISIGN-MLIQLPFLFILPKW--LGVDGVWLAMPLSNIA 424 (453)
T ss_pred HHHHHHh-HHHHHHHHHHHHHH--HCcchHhhHHHHHHHH
Confidence 9999877 57899999998754 6999999999765544
No 5
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=3.1e-44 Score=331.75 Aligned_cols=356 Identities=20% Similarity=0.308 Sum_probs=326.6
Q ss_pred cchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHH
Q 017945 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (363)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 80 (363)
+.|.++.+||++|++|+|+.++..++++.+..+++++.+++ ..+.+++..+++.|++..+.+.+|+++..++.++..+.
T Consensus 68 ~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~ 147 (456)
T PRK01766 68 LLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLY 147 (456)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999888877 77788999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH----hcCChhhHHHHHHHHHHHHHHHHHHHHHHhccc--c-cC
Q 017945 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK----LGWGLIGAAITLNLSWWLIVILQLLYIFITKSD--G-AW 153 (363)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~--~-~~ 153 (363)
..+++++|+.|++|.+++.+.++.++|++++++++++ .++|+.|+++++.+++.+..++..++.++++.. . .+
T Consensus 148 ~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~ 227 (456)
T PRK01766 148 QVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLF 227 (456)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhh
Confidence 9999999999999999999999999999999999864 258999999999999999999888877665321 1 12
Q ss_pred CCCCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017945 154 SGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNE 233 (363)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~ 233 (363)
+++.+++++..|++++.++|..+++..+...+..++.+.+++|++ ++++++++.++.++...+..+++.+..+.++|+
T Consensus 228 ~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~ 305 (456)
T PRK01766 228 KGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTV--TVAAHQIALNFSSLLFMLPLSLAMALTIRVGFE 305 (456)
T ss_pred ccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222344567899999999999999999999999999999999954 899999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcC
Q 017945 234 LGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAG 313 (363)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g 313 (363)
+|+||+|++++..+.+.++++.++++.+++++.+++++.++|++|+|+.+.+..++++..++.++++++....+++|+.|
T Consensus 306 ~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g 385 (456)
T PRK01766 306 LGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYK 385 (456)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhhhHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 017945 314 WQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLV 359 (363)
Q Consensus 314 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~l~ 359 (363)
|+|.+++.++.+.|++.+|..+++...+++|+.|+|++..+..++.
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~ 431 (456)
T PRK01766 386 DTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAA 431 (456)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHH
Confidence 9999999999999899999999999888899999999997665554
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.6e-43 Score=323.04 Aligned_cols=348 Identities=14% Similarity=0.112 Sum_probs=302.5
Q ss_pred cchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHH
Q 017945 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (363)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 80 (363)
+.|.++++||++|++|+|++++..++++.+.++++++..++ ..+.++++++++.|+|+.+.+.+|+++..++.|+..+.
T Consensus 66 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~ 145 (441)
T PRK10367 66 RMSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLAN 145 (441)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999988877 77889999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhcc-c-ccCCCCCH
Q 017945 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKS-D-GAWSGFSW 158 (363)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~-~~~~~~~~ 158 (363)
...++.+|+.||+|.++..++++.++|+++++++++++++|+.|+++|+.+++.+.++...+++++++. + .+.+.++.
T Consensus 146 ~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 225 (441)
T PRK10367 146 LVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKT 225 (441)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhh
Confidence 999999999999999999999999999999999999889999999999999999998887777766421 1 11111211
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 017945 159 LAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGN 238 (363)
Q Consensus 159 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~g~~~ 238 (363)
..++..|++++.+.|..+++......+.+.+.+++++|+ .++|+|+++.++.++.+++..|++++.+|.++|++|+||
T Consensus 226 ~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~--~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~ 303 (441)
T PRK10367 226 AWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGS--DIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARD 303 (441)
T ss_pred hhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence 113478999999999999999999999999999999995 389999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcC---cc
Q 017945 239 ARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAG---WQ 315 (363)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~~ 315 (363)
+|++|+..+++.+.++..+.+.++.++.+++++.++|++|+|+.+.+..++++..+..+.........+++++.+ |+
T Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt 383 (441)
T PRK10367 304 GSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEM 383 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHH
Confidence 999999999999999999999999999999999999999999999999999998876443334444444455555 59
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 017945 316 SLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALL 358 (363)
Q Consensus 316 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~l 358 (363)
|.++..++.+.|+..++. +++|+.|+|++..+...+
T Consensus 384 ~~~~~~~~~~~~~~~~~~-------~~~g~~Gvw~a~~~~~~~ 419 (441)
T PRK10367 384 RNSMAVAAAGFALTLLTL-------PWLGNHGLWLALTVFLAL 419 (441)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHcCchHHHHHHHHHHHH
Confidence 999999999876433322 246999999999765443
No 7
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=2.2e-34 Score=256.87 Aligned_cols=289 Identities=30% Similarity=0.465 Sum_probs=262.8
Q ss_pred cchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHH
Q 017945 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (363)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 80 (363)
++|..+.++|++|++|+|+.++..++++.+..+++++.+++ +.+.+++.++++.+++..+++.+|++++.++.++..+.
T Consensus 49 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 128 (342)
T TIGR00797 49 GTATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLN 128 (342)
T ss_pred HHhHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999998887 88889999888878888999999999999999999999
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHH-Hhc-CChhhHHHHHHHHHHHHHHHHHHHHHHh-cccccCCCCC
Q 017945 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLIL-KLG-WGLIGAAITLNLSWWLIVILQLLYIFIT-KSDGAWSGFS 157 (363)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~-~~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~ 157 (363)
....+.+|+.||++.+...++.+.++++.+++++++ .++ +|+.|+++++.+++++.+++..++.+|+ +.+.++++..
T Consensus 129 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (342)
T TIGR00797 129 FVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLL 208 (342)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccc
Confidence 999999999999999999999999999999998887 567 8899999999999999998887777653 2322222223
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 017945 158 WLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAG 237 (363)
Q Consensus 158 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~g~~ 237 (363)
+.+++..|++++++.|..++++...+....++.+.+.+|++ ++++|+++.++.++...+..+++++..|.+++++++|
T Consensus 209 ~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~--~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 286 (342)
T TIGR00797 209 KPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSI--ALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAG 286 (342)
T ss_pred CCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44567899999999999999999999999999999999854 8999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHH
Q 017945 238 NARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILL 292 (363)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~ 292 (363)
|.|+.++..+++.+..+.++.+.+.++.++++++.++|++|||+.+.+..++++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 287 DPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998887764
No 8
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=2.3e-33 Score=263.04 Aligned_cols=343 Identities=15% Similarity=0.108 Sum_probs=286.9
Q ss_pred HHHhhhcCCCc-chHHHHHHHHHHHHHHHH-HHHHHH-HHhhHHHHhhh--CCChHHHHHHHHHHHHHhhHHHHHHHHHH
Q 017945 8 LCGQAFGAGSI-RMLGVYMQRSWVILLITS-CVLSPL-YVWSPPVLMLF--GETAEISNAAGKFALWMLPQLFAYALNFP 82 (363)
Q Consensus 8 ~is~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 82 (363)
.+++..+++|+ |+.++...++.....+.+ ++..++ +.+.+++.+++ +.+++..+.+.+|+++..++.++..+...
T Consensus 63 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 142 (502)
T TIGR01695 63 FVPVFTKAKKKEKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAV 142 (502)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443 577777777666666554 444555 77778888877 45777788999999999999999999999
Q ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHH--HHHHHHHHHHHHHHHHHHHHhcccccCCCCCHHh
Q 017945 83 IQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAA--ITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLA 160 (363)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~~~g~~g~~--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (363)
.++.+|+.||++.++..+++.++++++...++ ..++|..|++ +++++++.+..++.+++.+|++.+.+. ++ +.+
T Consensus 143 ~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 218 (502)
T TIGR01695 143 FGGILNARKRFFIPSFSPILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP-RF-NFR 218 (502)
T ss_pred HHHHHhccCeeHHHHHHHHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC-cC-CCC
Confidence 99999999999999999999988776643333 3578999988 999999999988887777665322211 11 224
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCh
Q 017945 161 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAM-IAIGFNAAISVRVSNELGAGNA 239 (363)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~-~~~~~~~~~~p~is~~~g~~~~ 239 (363)
++..|++++++.|..+++....+...+|+.+.+.++++ ++++|+.+.++.++... +..+++++..|.+++++|++|.
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~--~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~ 296 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIG--SVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNW 296 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 56789999999999999999999999999887777754 88999999999988764 6789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccC----cHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcc
Q 017945 240 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTN----SEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQ 315 (363)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~ 315 (363)
|+.++..+++.+....++.|.++++..+++++..++.+ |+|..+.+..++++++++.++.+.+....+.+++.||+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~ 376 (502)
T TIGR01695 297 NELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDT 376 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCC
Confidence 99999999999999999999999999999999999876 56778889999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 017945 316 SLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLV 359 (363)
Q Consensus 316 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~l~ 359 (363)
|.+++.+..+. ++++|+++++... +|..|+|+++.++..+.
T Consensus 377 ~~~~~~~~~~~-~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~ 417 (502)
T TIGR01695 377 RTPFINSVISV-VLNALLSLLLIFP--LGLVGIALATSAASMVS 417 (502)
T ss_pred ccCHHHHHHHH-HHHHHHHHHHHHH--HhhhHHHHHHHHHHHHH
Confidence 99999999985 7899998888644 69999999998766554
No 9
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=5.4e-33 Score=259.70 Aligned_cols=349 Identities=16% Similarity=0.147 Sum_probs=289.1
Q ss_pred cchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHH
Q 017945 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (363)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 80 (363)
+++..+.+||+.+++|+|+.++.+++++++..+.+++..++ ..+.+++.+.++.+++. ..++++..++.++..+.
T Consensus 57 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~ 132 (488)
T TIGR02900 57 PVAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALS 132 (488)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999999888877 67777777766665543 35688889999999999
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH-----hcCChhhHHHHHHHHHHHHHHHHHHHHHHhcc-ccc--
Q 017945 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK-----LGWGLIGAAITLNLSWWLIVILQLLYIFITKS-DGA-- 152 (363)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~-----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~-- 152 (363)
...++.+|+++|+|..+..+..+.++++.++..++.. .+.|+.|+++++.+++.+..+..+++.+|++. +.+
T Consensus 133 ~~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T TIGR02900 133 SVLKGYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFP 212 (488)
T ss_pred HHHHHHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999999998877666542 23568888899999999999887766555421 212
Q ss_pred CCCCCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----Cc-hh---HHHHHH-HHHHHHHHHHHHHHHHHH
Q 017945 153 WSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRL----PN-AL---IAVDAI-SVCMNIQGWDAMIAIGFN 223 (363)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~~-~~---~~~a~~-~i~~~~~~~~~~~~~~~~ 223 (363)
+.+.++.+++..|++++++.|..++++........|+.++++. +. .+ ..++.| +.+.++..+...+..+++
T Consensus 213 ~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~ 292 (488)
T TIGR02900 213 FFDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLS 292 (488)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHH
Confidence 1122234567899999999999999999999999999888754 21 01 122333 356677788888889999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHh
Q 017945 224 AAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQP 303 (363)
Q Consensus 224 ~~~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 303 (363)
++..|.+++++|+||.|+.++..++..+....++.|.++.+..+++++..++.++++ +.+++++++++.++...+.
T Consensus 293 ~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~ 368 (488)
T TIGR02900 293 TALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSA 368 (488)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999875543 6778999999999999999
Q ss_pred HHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 017945 304 VLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLV 359 (363)
Q Consensus 304 ~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~l~ 359 (363)
...+.+++.||+|.+++.++.+. ++++++++.+...+++|..|+|+++.+++++.
T Consensus 369 ~~~~~l~~~g~~~~~~~~~~~~~-i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~ 423 (488)
T TIGR02900 369 PLQSILQGLGKQKVALRNSLIGA-IVKIILLFVLTSIPSINIYGYAITFIITSVLV 423 (488)
T ss_pred HHHHHHHhcCcchHHHHHHHHHH-HHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 99999999999999999999985 88999988877556689999999997766554
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=3.7e-31 Score=241.78 Aligned_cols=340 Identities=11% Similarity=-0.003 Sum_probs=282.5
Q ss_pred cchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHH
Q 017945 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (363)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 80 (363)
++|.++.++|+ ++|+|+.++..++++.+.++.+++.+++ ..+.+|+...++.+++. ..+..+..+..++..+.
T Consensus 59 ~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 132 (416)
T PRK15099 59 FNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWA 132 (416)
T ss_pred cceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHH
Confidence 34557778887 6788889999999999999999998887 88888998888766642 24566777777777888
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhcc-cccCCCCCHH
Q 017945 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKS-DGAWSGFSWL 159 (363)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 159 (363)
....+.+|+.+|++.++..++.+.++|+++ .++.+.. .|+.|+++|+++++.+..+...++.+|++. +.+..+ .+.
T Consensus 133 ~~~~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~-~~~ 209 (416)
T PRK15099 133 NLLLAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLK-PSW 209 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhh-ccC
Confidence 999999999999999999999999999877 4444332 499999999999999998777776665532 111111 133
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC
Q 017945 160 AFADLWAFVKLSLASAVMLCLEFWYLMLLVVITG-RLPNALIAVDAISVCMNIQGW-DAMIAIGFNAAISVRVSNELGAG 237 (363)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~i~~~~~~~-~~~~~~~~~~~~~p~is~~~g~~ 237 (363)
+++..|+++++|.|..+++....+....++.+++ .+|+ .++|.|+.+.++.+. ...+..+++++..|.+++. +
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~--~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~ 284 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSW--DEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T 284 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 5678999999999999999999999999999996 7774 499999999999885 4789999999999999995 6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchh
Q 017945 238 NARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSL 317 (363)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 317 (363)
|.||.++..++..+....+..+.++.+.++++++..++.+|+ .+++.+++++++++.++...+........+.++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~ 362 (416)
T PRK15099 285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF 362 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999998765 556788999999999999888888877778888888
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 017945 318 VAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLVL 360 (363)
Q Consensus 318 ~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~l~~ 360 (363)
....++.. .++++|+++++... +|..|++++..+++.+..
T Consensus 363 ~~~~~~~~-~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~ 402 (416)
T PRK15099 363 YILAEVSQ-FTLLTGFAHWLIPL--HGALGAAQAYMATYIVYF 402 (416)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHH
Confidence 77777776 57899999988754 699999999988776654
No 11
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=3.4e-29 Score=229.22 Aligned_cols=349 Identities=17% Similarity=0.165 Sum_probs=302.4
Q ss_pred cchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhh--CCChHHHHHHHHHHHHHhhHHHHHH
Q 017945 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLF--GETAEISNAAGKFALWMLPQLFAYA 78 (363)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~ 78 (363)
+++..|..++.. ++|+|+.++..+.......+.+++++++ +.+++++.+.+ +.+++..+.+.+.+++..+..++..
T Consensus 34 ~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~ 112 (451)
T PF03023_consen 34 SAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIG 112 (451)
T ss_pred HHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 345668888888 7888999999999998888888888887 88889998887 6678889999999999999999999
Q ss_pred HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhcCC---hhhHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 017945 79 LNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWG---LIGAAITLNLSWWLIVILQLLYIFITKSDGAWSG 155 (363)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~~~g---~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~ 155 (363)
+..++.+.+|+++|+..+....++.++..++...++. ...| +.+.++|..++..+..+..+...+|.+.+.+.+
T Consensus 113 l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~--~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~- 189 (451)
T PF03023_consen 113 LSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLS--NSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPK- 189 (451)
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccc-
Confidence 9999999999999999999999998877555433322 3356 889999999999999999888877764332211
Q ss_pred CCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 017945 156 FSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDA-MIAIGFNAAISVRVSNEL 234 (363)
Q Consensus 156 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~-~~~~~~~~~~~p~is~~~ 234 (363)
+ ..+.++.|++++...|..+.....++...+|+.+.+.+++| ++++++.++++.++.. .+..+++++..|.+|+..
T Consensus 190 ~-~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G--~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~ 266 (451)
T PF03023_consen 190 F-DWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEG--SVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLA 266 (451)
T ss_pred C-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12234689999999999999999999999999999999977 8999999999999887 577799999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccC----cHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHh
Q 017945 235 GAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTN----SEAVAAETTKLSILLAITVLMNCLQPVLSGVAV 310 (363)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~ 310 (363)
.++|.++.++..++..+..+.+.+|.++.+..++++++++... |+|..+.....+.+++++.++.++.......++
T Consensus 267 ~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fy 346 (451)
T PF03023_consen 267 AEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFY 346 (451)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999742 455578889999999999999999999999999
Q ss_pred hcCcchhhHHHHHHHHHHhhhHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 017945 311 GAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLVL 360 (363)
Q Consensus 311 ~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~l~~ 360 (363)
+.||+|.+++.++.+. ++++.+++.+... +|..|+.+++.++..++.
T Consensus 347 a~~~~~~~~~~~~~~~-~lni~l~~~l~~~--~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 347 ALGDTKTPVRISVISV-VLNIILSILLVPF--FGVAGLALATSLSAIISA 393 (451)
T ss_pred HccCcHhHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 9999999999999985 7999998777755 699999999987775553
No 12
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.98 E-value=9.2e-31 Score=237.39 Aligned_cols=354 Identities=45% Similarity=0.755 Sum_probs=336.4
Q ss_pred CcchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHH
Q 017945 1 MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (363)
Q Consensus 1 i~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 80 (363)
+..+..++++|++|.++.+....+.+++.......+++.+..+.+.+|+...+++++++...+..|.++..+..+.....
T Consensus 84 l~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~ 163 (473)
T KOG1347|consen 84 LQLALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVS 163 (473)
T ss_pred cchhhhcchHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCHHh
Q 017945 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLA 160 (363)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (363)
...+.++|++++..+..+......++|+.+++++++..++|..|++++..+++.........+....+....|..+..+
T Consensus 164 ~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~- 242 (473)
T KOG1347|consen 164 FPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE- 242 (473)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-
Confidence 9999999999999999999999999999999999999999999999999999999999988888776545555655555
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 017945 161 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNAR 240 (363)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~g~~~~~ 240 (363)
++.++++++.+.|..++...+++.+.....+.|.+++.+.+++..++..++....+++..+++.+...++++.+|+++.+
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~ 322 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK 322 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence 88999999999999999999999999999999999987889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchhhHH
Q 017945 241 AAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAY 320 (363)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 320 (363)
++|...+.....++..+...+..++..++.+..+|++|+|+.+...+..++++.+.++++.+.+..+..++.|+++...+
T Consensus 323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~ 402 (473)
T KOG1347|consen 323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAV 402 (473)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCCchHHHHHHHHH
Q 017945 321 INLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSL 355 (363)
Q Consensus 321 ~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~ 355 (363)
.++.+.++.++|....+.+..++|..|+|.|....
T Consensus 403 vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~ 437 (473)
T KOG1347|consen 403 INLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLG 437 (473)
T ss_pred EeeeeeeEecCcceeEEEEEEecCceEEEeehHHH
Confidence 99999999999999999988999999999987554
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.97 E-value=6e-26 Score=204.58 Aligned_cols=353 Identities=13% Similarity=0.042 Sum_probs=296.1
Q ss_pred CcchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhh-CC--ChHHHHHHHHHHHHHhhHHHH
Q 017945 1 MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLF-GE--TAEISNAAGKFALWMLPQLFA 76 (363)
Q Consensus 1 i~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~~l~i~~~~~~~ 76 (363)
++++..|...|+..++++|+.++..+........+.+.++++ ..+.+.+.+.. +. +++....+....+++.|.+++
T Consensus 66 fs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~ 145 (518)
T COG0728 66 FSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLF 145 (518)
T ss_pred HhhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 357888999999988888888877777776777777777777 67777777454 22 344444688888999999999
Q ss_pred HHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Q 017945 77 YALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGF 156 (363)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (363)
.++...+.+.+|+.+|+..+.+..++.++.-+.....+....+.-..+.++|..++.+.+.++.+..++|.+...+++.
T Consensus 146 isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~- 224 (518)
T COG0728 146 ISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRF- 224 (518)
T ss_pred HHHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCC-
Confidence 9999999999999999999999999999877645444443322236788999999999999999999988743222211
Q ss_pred CHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Q 017945 157 SWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDA-MIAIGFNAAISVRVSNELG 235 (363)
Q Consensus 157 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~-~~~~~~~~~~~p~is~~~g 235 (363)
..+.+..|++.+...|..++....++...+|+.+.+.+.++ +++.++.+.++.++.. .+..+++++..|.+|++.+
T Consensus 225 -~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~ 301 (518)
T COG0728 225 -GFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAA 301 (518)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 12225899999999999999999999999999999999877 8899999999999988 7899999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccC----cHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhh
Q 017945 236 AGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTN----SEAVAAETTKLSILLAITVLMNCLQPVLSGVAVG 311 (363)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 311 (363)
++|.++.++..+++++..+...+|.++++.++++++.+++.. +++......+.+..++++.++.....+....+++
T Consensus 302 ~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYA 381 (518)
T COG0728 302 NGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYA 381 (518)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999742 3455777889999999999999999999999999
Q ss_pred cCcchhhHHHHHHHHHHhhhHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 017945 312 AGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLVL 360 (363)
Q Consensus 312 ~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~l~~ 360 (363)
++|+|.|+++++.+. ++++.+++.+. +.+|..|+.++..++.+++.
T Consensus 382 r~d~ktP~~i~ii~~-~~n~~l~~~l~--~~~~~~giala~s~a~~~~~ 427 (518)
T COG0728 382 REDTKTPMKIAIISL-VVNILLNLLLI--PPLGHVGLALATSLAAWVNA 427 (518)
T ss_pred ccCCCcChHHHHHHH-HHHHHHHHHHH--hhccchHHHHHHHHHHHHHH
Confidence 999999999999985 89999985555 44699998888877665553
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.94 E-value=5.2e-23 Score=192.36 Aligned_cols=318 Identities=11% Similarity=0.056 Sum_probs=255.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHH
Q 017945 23 VYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISA 101 (363)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (363)
+..++.+++..+.+++..++ ..+.+++...++ +++. ...+++..+..++..+.....+.+|+++|++.....+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 44567777777778777666 555555555444 3332 34677788888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCHHhHHhHHHHHHHHHHHHHHHHHH
Q 017945 102 IVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLE 181 (363)
Q Consensus 102 ~~~~~~~i~~~ili~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 181 (363)
...+...++...+.+ .+.|..+.+++..++..+..+......++ +.+++ .+.+++..|++++++.|...+++..
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~----~~~~~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRPA----LHFSLASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCcc----ceecHHHHHHHHhhhHHHHHHHHHH
Confidence 988888777766554 47899999999999998877654433222 21111 1123457899999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 017945 182 FWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDA-MIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCC 260 (363)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~-~~~~~~~~~~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (363)
.+..+.|+.+++++.+ +.++|.|+.+.++.+... .+...++++..|..++. ++|.++.++..++..+....+++|.
T Consensus 224 ~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 224 YLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888753 558999999999998765 45556788999999986 6788999999999999999999999
Q ss_pred HHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHh
Q 017945 261 TILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFT 340 (363)
Q Consensus 261 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~ 340 (363)
.+++.+.++++..++.+++ +..+...++++++...+..........+++.||+|..+..+++.. +..+|..+.+..
T Consensus 301 ~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~~- 376 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGGQ- 376 (492)
T ss_pred HHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHHh-
Confidence 9999999999998887655 677899999999999999999999999999999999999998875 677887766654
Q ss_pred cCCCchHHHHHHHHHHHHH
Q 017945 341 FGFGAEVTYYLSFSLALLV 359 (363)
Q Consensus 341 ~~~g~~G~~~~~~~~~~l~ 359 (363)
.+|..|+.+++.+++.+.
T Consensus 377 -~~G~~g~a~a~~i~~~~~ 394 (492)
T PRK10459 377 -LAGLIGVALGFLLVQIIN 394 (492)
T ss_pred -hccHHHHHHHHHHHHHHH
Confidence 469999999998776554
No 15
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.92 E-value=3.5e-23 Score=189.50 Aligned_cols=198 Identities=22% Similarity=0.210 Sum_probs=188.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 017945 160 AFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNA 239 (363)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~g~~~~ 239 (363)
.++..|+++++++|.++.++.+.....+|++++|+++ ++++|+.++++++..+...+..+++.+..+.++|++|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 4568999999999999999999999999999999999 44999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchhhH
Q 017945 240 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVA 319 (363)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 319 (363)
+++++..+++...+++++++..+..+.+++++..++.+++|+.+.+.+|+++..++.++...+....+++|+.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHh-cC-CCchHHHHHHHHHHHHHH
Q 017945 320 YINLGCYYIVGLPLGILLGFT-FG-FGAEVTYYLSFSLALLVL 360 (363)
Q Consensus 320 ~~~~~~~~~~~i~~~~~l~~~-~~-~g~~G~~~~~~~~~~l~~ 360 (363)
+.++++. +.|+.+++++.+. ++ +|+.|+++|+.++..+..
T Consensus 170 ~~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~ 211 (455)
T COG0534 170 YILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGA 211 (455)
T ss_pred HHHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 9999996 8999999999998 56 999999999987766553
No 16
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.92 E-value=9e-23 Score=186.75 Aligned_cols=197 Identities=13% Similarity=0.084 Sum_probs=184.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 017945 161 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNAR 240 (363)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~g~~~~~ 240 (363)
+++.|+++++++|.+++++.+.....+|+.+++++++ +.++|+.+++.++.++...+..+++.+..+.+||++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 3468899999999999999999999999999999953 458999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchhhHH
Q 017945 241 AAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAY 320 (363)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 320 (363)
++++..+++...++.++++..+....+.+++..+++.|+|+.+.+.+|+++..++.++........+++|+.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999988888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 017945 321 INLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLV 359 (363)
Q Consensus 321 ~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~l~ 359 (363)
.++++. ++++++++++.+.+++|+.|+++++.++..+.
T Consensus 164 ~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~ 201 (441)
T PRK10367 164 LLVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYAT 201 (441)
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 999995 88999999999988999999999998776554
No 17
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.92 E-value=1.6e-22 Score=186.84 Aligned_cols=196 Identities=14% Similarity=0.057 Sum_probs=183.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 017945 161 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNAR 240 (363)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~g~~~~~ 240 (363)
-+..|++++.++|.+++++.......+|+.+++++|+ +++|+++++.++..+...+..+++++..+.++|++|+||+|
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~--~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGK--EAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 3569999999999999999999999999999999995 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc--CcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchhh
Q 017945 241 AAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFT--NSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLV 318 (363)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 318 (363)
++++..+++...++.++.+.+.+.+.+++++..++. .|+|+.+.+.+|+++..++.++.+......+++|+.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 999999999999999999999999999999999995 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHh----cCCCchHHHHHHHHHHHHH
Q 017945 319 AYINLGCYYIVGLPLGILLGFT----FGFGAEVTYYLSFSLALLV 359 (363)
Q Consensus 319 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~~~~~~~~l~ 359 (363)
++.++.+ .++++++++++.+. +++|+.|+|+|+.++..+.
T Consensus 183 ~~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~ 226 (478)
T PRK10189 183 LLINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIG 226 (478)
T ss_pred HHHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHH
Confidence 9999986 58999999998875 3899999999998766554
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.91 E-value=1.6e-22 Score=186.77 Aligned_cols=195 Identities=16% Similarity=0.113 Sum_probs=180.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 017945 160 AFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNA 239 (363)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~g~~~~ 239 (363)
++++.|++++.++|.+++++.+.+...+|+.+++++|+ .++++++++.++.++...+..+++++..|.++|++|+||+
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~--~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGP--EALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 45689999999999999999999999999999999994 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchhhH
Q 017945 240 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVA 319 (363)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 319 (363)
|++++..+++....+.++++..+... +.+++..++++|+|+.+.+.+|+++..++.++........+++|+.||++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 161 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM 161 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877765 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHhc----CCCchHHHHHHHHHHHH
Q 017945 320 YINLGCYYIVGLPLGILLGFTF----GFGAEVTYYLSFSLALL 358 (363)
Q Consensus 320 ~~~~~~~~~~~i~~~~~l~~~~----~~g~~G~~~~~~~~~~l 358 (363)
+.++++. +++++++|++.+.+ ++|+.|+++++.++..+
T Consensus 162 ~~~~~~~-~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~ 203 (464)
T PRK00187 162 VISLAGA-VANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNG 203 (464)
T ss_pred HHHHHHH-HHHHHHHHHHHcCCCCCccccccchHHHHHHHHHH
Confidence 9999985 78999999988642 68999999999766544
No 19
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.91 E-value=1.3e-20 Score=175.75 Aligned_cols=278 Identities=17% Similarity=0.110 Sum_probs=225.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHH
Q 017945 64 GKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLY 143 (363)
Q Consensus 64 ~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~~~g~~g~~~a~~i~~~~~~~~~~~~ 143 (363)
...+++..+..+........++.+|+.++++......+.+ . ......+... ........++...+..........+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (480)
T COG2244 117 ALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS-I--FLLAAVFALL-FAALGLAVWALVLGAVVSLLVLLIL 192 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-H--HHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3457788999999999999999999999999999994444 1 1111111111 1345566666666666666555555
Q ss_pred HHHhcccccCCCCCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017945 144 IFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFN 223 (363)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~ 223 (363)
.++++.+..+..+ +..++..|+.+++++|...++....+..+.|+++++.+-+ +.++|.|+.+.++......+..+++
T Consensus 193 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~ 270 (480)
T COG2244 193 LGKKKRGLKRPIL-RFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALN 270 (480)
T ss_pred HHHhhhhcccccc-CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHH
Confidence 5432221111111 2246789999999999999999999999999999998764 5589999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHh
Q 017945 224 AAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQP 303 (363)
Q Consensus 224 ~~~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 303 (363)
.+..|.+++..+++|.++.++..++..++...++.|..+++..+++++..++.+++ ...+...+++++++..+.+...
T Consensus 271 ~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~ 348 (480)
T COG2244 271 RVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVS 348 (480)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987665 4448899999999999999999
Q ss_pred HHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHhcCCCchHHHHHH
Q 017945 304 VLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLS 352 (363)
Q Consensus 304 ~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~ 352 (363)
.....+++.||++..++.+..+. +.++.+++++... +|..|...+.
T Consensus 349 ~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li~~--~g~~g~~~a~ 394 (480)
T COG2244 349 LTSSLLQALGKQRLLLLISLISA-LLNLILNLLLIPR--FGLIGAAIAT 394 (480)
T ss_pred HHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHHHh--hhhhhHHHHH
Confidence 99999999999999999999985 7888888888744 5888887766
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.90 E-value=7.5e-22 Score=181.94 Aligned_cols=196 Identities=12% Similarity=0.056 Sum_probs=185.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 017945 161 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRL-PNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNA 239 (363)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~g~~~~ 239 (363)
++..|++++.++|.+++++...+...+|+.+++++ | +++++++++++++.++...+..+++.+..+.++|++|+||+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 45789999999999999999999999999999997 7 44899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchhhH
Q 017945 240 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVA 319 (363)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 319 (363)
|++++..+++..++++++++.+++...+++++..++++|+|+.+.+.+|+++..++.++..+.....+.+|+.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 017945 320 YINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLV 359 (363)
Q Consensus 320 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~l~ 359 (363)
..++.+. ++++++++++.+.+++|+.|+++++.++..+.
T Consensus 166 ~~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~ 204 (453)
T PRK09575 166 GLMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVV 204 (453)
T ss_pred HHHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 9999985 89999999999888999999999998776655
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.90 E-value=3e-21 Score=178.64 Aligned_cols=198 Identities=14% Similarity=0.071 Sum_probs=183.5
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 017945 159 LAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGN 238 (363)
Q Consensus 159 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~g~~~ 238 (363)
..++..|+++++++|.+++++.......+|+.+++++|+ .++++++++.++......+..+++.+..|.+||++|++|
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~--~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSA--TDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 335689999999999999999999999999999999985 489999999999888888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchhh
Q 017945 239 ARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLV 318 (363)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 318 (363)
+|+.++..+++..+.+.++++.++.++.+++++..+++.|+|+.+.+.+++++..++.++........+++++.||+|.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHh----cCCCchHHHHHHHHHHHHH
Q 017945 319 AYINLGCYYIVGLPLGILLGFT----FGFGAEVTYYLSFSLALLV 359 (363)
Q Consensus 319 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~~~~~~~~l~ 359 (363)
++.++.+. ++++++++++.+. +++|+.|+++++.++.++.
T Consensus 164 ~~~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~ 207 (456)
T PRK01766 164 MVIGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVM 207 (456)
T ss_pred HHHHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHH
Confidence 99999986 7899999988753 4689999999998776654
No 22
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.84 E-value=4e-21 Score=152.36 Aligned_cols=162 Identities=24% Similarity=0.367 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 017945 173 ASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSIT 252 (363)
Q Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~g~~~~~~~~~~~~~~~~~ 252 (363)
|.+++++.......+++.+++++|++ ++++++++.++.++...+..+++++..+.+||++|++|+|++++..+++..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~--~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPE--ALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTC--CCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 88999999999999999999999854 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchhhHHHHHHHHHHhhhH
Q 017945 253 AVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLP 332 (363)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 332 (363)
...++++.++.+..+++++..+|++|+|+.+.+.+++++..++.++.+......+++++.||+|.+++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred HHHH
Q 017945 333 LGIL 336 (363)
Q Consensus 333 ~~~~ 336 (363)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9874
No 23
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.81 E-value=6.5e-18 Score=150.74 Aligned_cols=184 Identities=19% Similarity=0.190 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 017945 173 ASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSIT 252 (363)
Q Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~g~~~~~~~~~~~~~~~~~ 252 (363)
|.+++++...+....|+.+++++|+ .++++++.+.++..+...+..+++++..|.++++.|+||.|+.++..++....
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGP--VDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 6788899999999999999999995 38999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchhhHHHHHHHHHHhhhH
Q 017945 253 AVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLP 332 (363)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 332 (363)
...++++.+++...+++++.++++.|++..+.+..+++++.++.++.+......+.+++.||++.+++.++.+. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888899999999999999999999999999999999999999999985 78888
Q ss_pred HHHHHHH-hcC-CCchHHHHHHHHHHHHH
Q 017945 333 LGILLGF-TFG-FGAEVTYYLSFSLALLV 359 (363)
Q Consensus 333 ~~~~l~~-~~~-~g~~G~~~~~~~~~~l~ 359 (363)
.++++.. .++ +|..|++++..++.++.
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~ 186 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLM 186 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHH
Confidence 8888876 566 78999999998766654
No 24
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.59 E-value=2.9e-12 Score=110.38 Aligned_cols=217 Identities=19% Similarity=0.219 Sum_probs=158.4
Q ss_pred chhHHHHHhhhcCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHH
Q 017945 3 SALETLCGQAFGAGSI--RMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (363)
Q Consensus 3 ~~~~~~is~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 80 (363)
.|.+..+.|+..++++ ++.+++.........+.+++......... ..+.++ ... .+........++....
T Consensus 54 ~G~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~-~~~---~~~~~~~~~~~~~~~~ 125 (273)
T PF01943_consen 54 LGLSQAIVRFIAEYKDKKELRSAYFSSVLFLLLIFSLIFLLILLIAS----FFGNPS-LSL---ILIILALLILILSSLS 125 (273)
T ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCch-HHH---HHHHHHHHHHHHHHHH
Confidence 4566667777666554 34455555555444444444433322222 333332 211 1222222222578888
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCHHh
Q 017945 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLA 160 (363)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (363)
......+++.++.+.....++...+...+...++... +.+..+..++..++..+..+...++.+|+.. ++++..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 200 (273)
T PF01943_consen 126 SVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR----PRFSFFS 200 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----ccccccc
Confidence 9999999999999999999999999888776666653 4458999999999999998888888776531 2222333
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017945 161 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNE 233 (363)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~ 233 (363)
++..|++++++.|..++++...+....|..+++++.+ +.++|.|+.+.++......+..++.++..|.+++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999999875 56899999999999999999999999999999985
No 25
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.48 E-value=6.2e-12 Score=118.28 Aligned_cols=144 Identities=21% Similarity=0.184 Sum_probs=129.8
Q ss_pred cchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhCC----ChHHHHHHHHHHHHHhhHHHH
Q 017945 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGE----TAEISNAAGKFALWMLPQLFA 76 (363)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~ 76 (363)
+++..|.+||.++++|+|+.++..+++.......+++..+. ..+++++.+.+.+ ++|..+++..++++.+++.++
T Consensus 280 ~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~ 359 (502)
T TIGR01695 280 STVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIF 359 (502)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999999999887 8899999988754 456778889999999999999
Q ss_pred HHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017945 77 YALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT 147 (363)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 147 (363)
..+.....+.+++.||+|.+++......++|++++++++. .+|..|+++|+.+++.+..+...++.+|+
T Consensus 360 ~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 360 YSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988875 37999999999999999998887777664
No 26
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.45 E-value=2.3e-10 Score=97.30 Aligned_cols=210 Identities=18% Similarity=0.198 Sum_probs=149.2
Q ss_pred hhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 017945 4 ALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPI 83 (363)
Q Consensus 4 ~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 83 (363)
|....+.+. .++|+++.++..+.......+.+++..++.. .+...+ .+++ ...++....+..+........
T Consensus 40 g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~ 110 (251)
T PF13440_consen 40 GLRQSLVRS-AARDKQDIRSLLRFSLLVSLLLAVILAILAI---LIAYFF-GDPE----LFWLLLLLALAIFFSALSQLF 110 (251)
T ss_pred HHHHHHHHh-hccCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHH
Confidence 444555553 3355556666666666554554444433311 111122 2332 224566677888889999999
Q ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCHHhHHh
Q 017945 84 QKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFAD 163 (363)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (363)
++.+++++|.+.....+....+...+....+.+ .+.+..+..++..++..+..+..+...++ + .+.++ +.+.
T Consensus 111 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~----~~~~ 182 (251)
T PF13440_consen 111 RSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLRR-K--LRLSF----KFSW 182 (251)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhcc-c--cCCCc----hhhH
Confidence 999999999999999999999888555544443 34588899999999998887776653332 1 11111 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 017945 164 LWAFVKLSLASAVMLCLEFWYLMLLVVITGR-LPNALIAVDAISVCMNIQGWDA-MIAIGFNAAISVRVSNE 233 (363)
Q Consensus 164 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~i~~~~~~~~~-~~~~~~~~~~~p~is~~ 233 (363)
.| .++.+.|....++......+.|..+++. +| .+++|.|+.+.++.+... .+..++++...|.++|.
T Consensus 183 ~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~--~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 183 RR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG--PEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34 7999999999999999999999999999 65 458999999999999888 99999999999999863
No 27
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.44 E-value=1.2e-11 Score=113.15 Aligned_cols=195 Identities=13% Similarity=0.168 Sum_probs=179.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCh
Q 017945 161 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGW-DAMIAIGFNAAISVRVSNELGAGNA 239 (363)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~-~~~~~~~~~~~~~p~is~~~g~~~~ 239 (363)
..+.|++.+++.|..+....+.....++..+.+++|+. ++++.+++++..+. .+.+..++..+..|.++|.+|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~l--eLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNL--ELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccch--HHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 67899999999999999999999999999999999953 89999999998886 4568889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchhhH
Q 017945 240 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVA 319 (363)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 319 (363)
+....+..++.......+.|.+.. +.+.+++...+.+|+++...+..+.+...+..+.+.........+|+.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 999999999998888888888754 5566999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 017945 320 YINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLV 359 (363)
Q Consensus 320 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~l~ 359 (363)
++...+. ..++++++++....++|..|..++..+..++.
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~ 219 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLN 219 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHH
Confidence 9999985 89999999999999999999999987766654
No 28
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.41 E-value=2.9e-11 Score=113.31 Aligned_cols=181 Identities=16% Similarity=0.092 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCChHHHHHH
Q 017945 168 VKLSLASAVMLCLEFWYLMLLVVITGRL-PNALIAVDAISVCMNIQGWDAMIA-IGFNAAISVRVSNELGAGNARAAKFS 245 (363)
Q Consensus 168 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~i~~~~~~~~~~~~-~~~~~~~~p~is~~~g~~~~~~~~~~ 245 (363)
.|-+.|..+++........+++.++++. |+ ++.|+++.+.++..+...+. .|++++..+.++|+.|++|+|+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~--~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~ 79 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGA--EGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKI 79 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCH--HHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHH
Confidence 4668899999999999999999999985 74 48999999999988887765 48999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchhhHHHHHHH
Q 017945 246 VLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGC 325 (363)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 325 (363)
.+.+....+..+.+.++.+..+.+++...+.+|++. ..+++++.+..++.++.......+|+.+|.|..+..+..+
T Consensus 80 ~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 155 (488)
T TIGR02900 80 LKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIE 155 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHH
Confidence 999999999999999999999999988877666643 3467788899999999999999999999999999999887
Q ss_pred HHHhhhHHHHHHHH-----hcCCCchHHHHHHHHH
Q 017945 326 YYIVGLPLGILLGF-----TFGFGAEVTYYLSFSL 355 (363)
Q Consensus 326 ~~~~~i~~~~~l~~-----~~~~g~~G~~~~~~~~ 355 (363)
. +.++.....+.. ..++|+.|..+++.++
T Consensus 156 ~-i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~ 189 (488)
T TIGR02900 156 Q-IVRISVVALLISAFLPYGLEYAVAGAYLSLVLG 189 (488)
T ss_pred H-HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 5 455444333322 1234566666655443
No 29
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.39 E-value=1.3e-10 Score=106.89 Aligned_cols=144 Identities=20% Similarity=0.173 Sum_probs=131.2
Q ss_pred cchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhC----CChHHHHHHHHHHHHHhhHHHH
Q 017945 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFG----ETAEISNAAGKFALWMLPQLFA 76 (363)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~ 76 (363)
++..-|.+||...++|+++.++.+++++.....+.++.++. ..+++|+.+.+. .++|..+.+...++++++++|+
T Consensus 255 ~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~ 334 (451)
T PF03023_consen 255 STVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPF 334 (451)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 34566889999999999999999999999999999999987 999999998773 3667788889999999999999
Q ss_pred HHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017945 77 YALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT 147 (363)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 147 (363)
..+...+...+.+.+|+|.++..++.+.++|++++.++.. .+|..|.++++.++..+.++..+...+|+
T Consensus 335 ~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 335 YALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999977775 47999999999999999999988888775
No 30
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.34 E-value=1.7e-09 Score=98.75 Aligned_cols=144 Identities=19% Similarity=0.178 Sum_probs=128.6
Q ss_pred cchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhC----CChHHHHHHHHHHHHHhhHHHH
Q 017945 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFG----ETAEISNAAGKFALWMLPQLFA 76 (363)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~ 76 (363)
++..-|.+||...++|.++.++..++++.+..++.++.++. ..+++|+.+.+. .+++....+.+.+..++.++++
T Consensus 289 ~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~ 368 (518)
T COG0728 289 STVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIP 368 (518)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHH
Confidence 34567889999999999999999999999999999999988 899999998762 2556667778899999999999
Q ss_pred HHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017945 77 YALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT 147 (363)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 147 (363)
..+..++...+.+.||+|.|+++.+++.++|++++..+.. .+|..|.++++.++.++.+..+++..+|+
T Consensus 369 ~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 369 FALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999966554 47888899999999999999988888775
No 31
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.34 E-value=4e-13 Score=106.32 Aligned_cols=112 Identities=25% Similarity=0.391 Sum_probs=107.1
Q ss_pred cchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHH
Q 017945 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (363)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 80 (363)
++|.++.+||++|++|+|++++..+.++.+..+++++.+++ ..+.+++.++++.|++..+++.+|+++..++.|+..+.
T Consensus 49 ~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (162)
T PF01554_consen 49 ATALQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALF 128 (162)
T ss_dssp HHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHH
Confidence 57899999999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHH-HHHHHHHHH
Q 017945 81 FPIQKFLQAQRKVLVMAWISAIVL-VLHALFSWL 113 (363)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~-~~~~i~~~i 113 (363)
...++++|+.||+|.+++.+..+. +++++++++
T Consensus 129 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 129 FVFSGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp HHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 999999999999999999999999 999988864
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.09 E-value=9e-09 Score=94.41 Aligned_cols=180 Identities=12% Similarity=0.031 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhcCCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHH
Q 017945 168 VKLSLASAVMLCLEFWYLMLLV-VITGRLPNALIAVDAISVCMNIQGWDAMI-AIGFNAAISVRVSNELGAGNARAAKFS 245 (363)
Q Consensus 168 ~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~i~~~~~~~~~~~-~~~~~~~~~p~is~~~g~~~~~~~~~~ 245 (363)
.|-+.................. .+...+|++ +.+..+..+.+..+...+ ..+++++....++|+ ++|.|+.++.
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~--~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~ 79 (416)
T PRK15099 4 AKASLWTAASTLVKIGAGLLVVKLLAVSFGPA--GVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAV 79 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH--HHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHH
Confidence 4445555555555655555544 444456643 788888888887766655 677888888888887 6888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchhhHHHHHHH
Q 017945 246 VLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGC 325 (363)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 325 (363)
.+.+....+..+++.++.++.+.+++...+.+|++ . ..+..+..+..++....+...+.+|+.||++.++...+.+
T Consensus 80 ~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~ 155 (416)
T PRK15099 80 VGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD-Y---QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVG 155 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887766664 2 3455666666667788889999999999999999999888
Q ss_pred HHHhhhHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 017945 326 YYIVGLPLGILLGFTFGFGAEVTYYLSFSLALL 358 (363)
Q Consensus 326 ~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~l 358 (363)
. +.++.+ +++.... .|+.|..+++.++..+
T Consensus 156 ~-~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i 185 (416)
T PRK15099 156 S-LIGVAA-YYLCYRL-GGYEGALLGLALVPAL 185 (416)
T ss_pred H-HHHHHH-HHHHHHH-hcchHHHHHHHHHHHH
Confidence 5 677665 3333322 3999999999776555
No 33
>PRK10459 colanic acid exporter; Provisional
Probab=99.02 E-value=4.9e-07 Score=84.95 Aligned_cols=137 Identities=17% Similarity=0.015 Sum_probs=112.4
Q ss_pred hHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 017945 5 LETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPI 83 (363)
Q Consensus 5 ~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 83 (363)
..|..|+. ++|+|+.++.+.+.......++++..+. ...++|+...+.+++ ..++...++++++...+..+....
T Consensus 268 ~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~ 343 (492)
T PRK10459 268 AFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPI 343 (492)
T ss_pred HhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555664 6778889999999999999999998887 888899888776544 356778899999999999999999
Q ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017945 84 QKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT 147 (363)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 147 (363)
...+++.||.|.+...+++..++++...+.+. ..+|..|+++++.+++.+.+....++..||
T Consensus 344 ~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 344 GSLLLAKGRADLSFKWNVFKTFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHcCccchhHHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888877776655444 347999999999999999988887777553
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.95 E-value=4.7e-07 Score=84.46 Aligned_cols=295 Identities=11% Similarity=-0.011 Sum_probs=194.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHh---c--CCh------hhHHHHH
Q 017945 61 NAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKL---G--WGL------IGAAITL 129 (363)
Q Consensus 61 ~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~---~--~g~------~g~~~a~ 129 (363)
+.....+.+...+.....+...+....|..-+.+.-......+...+.+..+.++... + ++. .-+.++.
T Consensus 129 p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~F 208 (549)
T PF04506_consen 129 PYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLRVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAF 208 (549)
T ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhheeeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHH
Confidence 3444455666677777777777766666666666666666666666665555544432 1 111 1223445
Q ss_pred HHHHHHHHHHHHHHHHHh-ccc-cc----CCCCCH---HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCch
Q 017945 130 NLSWWLIVILQLLYIFIT-KSD-GA----WSGFSW---LAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGR--LPNA 198 (363)
Q Consensus 130 ~i~~~~~~~~~~~~~~~~-~~~-~~----~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~ 198 (363)
.++++.-.+......... ... .. .++... .+...-++.++.......+.+...+...-|.+++.. +.+
T Consensus 209 algq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t- 287 (549)
T PF04506_consen 209 ALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT- 287 (549)
T ss_pred HHHHHHHHHHHHhhHHhhccCcccchhhccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-
Confidence 555555443332222211 111 11 111111 111134788999999999999999999999988888 665
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017945 199 LIAVDAISVCMNIQGWDA-MIAIGFNAAISVRVSNELGAGNA---------RAAKFSVLVVSITAVTIGVCCTILVLATR 268 (363)
Q Consensus 199 ~~~~a~~~i~~~~~~~~~-~~~~~~~~~~~p~is~~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (363)
..+-|.|+++++.-+++- .+..-+-.+.....++...+++. ++..+.....++....+++.+...-...+
T Consensus 288 ~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s 367 (549)
T PF04506_consen 288 FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYS 367 (549)
T ss_pred HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhH
Confidence 446789999999988764 56667888888888877654322 45667777788888888877777777777
Q ss_pred ccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchhhHHH---HHHHHHHhhhHHHHHHHHhcCCCc
Q 017945 269 YNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYI---NLGCYYIVGLPLGILLGFTFGFGA 345 (363)
Q Consensus 269 ~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~---~~~~~~~~~i~~~~~l~~~~~~g~ 345 (363)
+.+..++.+++-....+...++.++...++.+++.+..++.++...++..... ..+. -++.+..+|.+... ++|.
T Consensus 368 ~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~-S~~f~~~~~~l~~~-~~G~ 445 (549)
T PF04506_consen 368 PLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLDRYNYWMVVF-SAIFLAASYLLTRW-GLGA 445 (549)
T ss_pred HHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhc-cCCC
Confidence 77777776544333446888999999999999999999999999888764432 2222 24566677888876 7899
Q ss_pred hHHHHHHHHHHHH
Q 017945 346 EVTYYLSFSLALL 358 (363)
Q Consensus 346 ~G~~~~~~~~~~l 358 (363)
.|..+|..+-+.+
T Consensus 446 ~GlI~AN~iNM~l 458 (549)
T PF04506_consen 446 VGLILANCINMSL 458 (549)
T ss_pred chHHHHHHHHHHH
Confidence 9999998765543
No 35
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.79 E-value=9.9e-07 Score=82.61 Aligned_cols=126 Identities=25% Similarity=0.282 Sum_probs=110.7
Q ss_pred cchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHH
Q 017945 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (363)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 80 (363)
+...-|.++|...++|+++.++..+++.......+++..+. ..+.+|+...+.+++.. .+...+++.+++.++..+.
T Consensus 270 ~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~ 347 (480)
T COG2244 270 NRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLV 347 (480)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHH
Confidence 45677999999999999999999999999999999999988 88888998877655432 2667899999999999999
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 017945 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLS 132 (363)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~~~g~~g~~~a~~i~ 132 (363)
......+++.||.+........+.++|.+++.+++. ..|..|++.++ .+
T Consensus 348 ~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~ 396 (480)
T COG2244 348 SLTSSLLQALGKQRLLLLISLISALLNLILNLLLIP--RFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HH
Confidence 999999999999999999999999999999999885 47889999988 44
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=8.1e-05 Score=65.79 Aligned_cols=288 Identities=12% Similarity=0.014 Sum_probs=178.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHH-Hh-cCChhhHHHHHHHHHHHHHHHHHH
Q 017945 65 KFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLIL-KL-GWGLIGAAITLNLSWWLIVILQLL 142 (363)
Q Consensus 65 ~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~-~~-~~g~~g~~~a~~i~~~~~~~~~~~ 142 (363)
....+...+.....+...+.-..|...+.+.-...+-+...+..++....++ +. +.++..-++|.......-.++..+
T Consensus 124 ~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~ 203 (530)
T KOG2864|consen 124 FAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYW 203 (530)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHH
Confidence 3345556666667777777778888888888888888888877555444443 22 245555666666666655553333
Q ss_pred HHHHh-cccc------cC----CCC-CH-HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CchhHHHHHHH
Q 017945 143 YIFIT-KSDG------AW----SGF-SW-LAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRL---PNALIAVDAIS 206 (363)
Q Consensus 143 ~~~~~-~~~~------~~----~~~-~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~ 206 (363)
...+. +.++ +. ++. .+ .....-++..|.......+.+..++...-+..++... .-+ +-|.|.
T Consensus 204 ~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~--~QgvYd 281 (530)
T KOG2864|consen 204 FYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFG--DQGVYD 281 (530)
T ss_pred HHHHHcCCcccccchhhhhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcc--hhhHHH
Confidence 33332 2000 00 000 00 0011234555555566666666777666666555522 112 335888
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHH
Q 017945 207 VCMNIQGWDA-MIAIGFNAAISVRVSNELGAGNARAAKF---SVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVA 282 (363)
Q Consensus 207 i~~~~~~~~~-~~~~~~~~~~~p~is~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 282 (363)
.+++.-.+.. .+..-+-.......++...+++.|+.|+ ...+..+....+++.....-...++....++++++-..
T Consensus 282 ~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss 361 (530)
T KOG2864|consen 282 LVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSS 361 (530)
T ss_pred HHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccC
Confidence 8888876554 5666677777777777666555555544 45556666666666555555566667777776544333
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchhhHH---HHHHHHHHhhhHHHHHHHHhcCCCchHHHHHHHHHHH
Q 017945 283 AETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAY---INLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLAL 357 (363)
Q Consensus 283 ~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~ 357 (363)
..+...+++++...++.+++.+..++..+.+..+..-. ..+... +..+.++|+++... |..|.-+|..+-+.
T Consensus 362 ~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafS-viflilsylL~~~~--~~~GlIlANiiNm~ 436 (530)
T KOG2864|consen 362 GGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFS-VIFLILSYLLIRWF--GLVGLILANIINMS 436 (530)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHH-HHHHHHHHHHHHHh--chhHHHHHHHHHHH
Confidence 44668899999999999999999999999887765433 223332 46678899999775 88998888865443
No 37
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.62 E-value=1.1e-05 Score=62.32 Aligned_cols=79 Identities=25% Similarity=0.330 Sum_probs=73.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 017945 67 ALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFI 146 (363)
Q Consensus 67 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 146 (363)
+++.+++.++..+.....+.+++.||+|........+.++|++++++++. ++|..|+++|+.+++.+......+..+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999974 5899999999999999999888888777
Q ss_pred h
Q 017945 147 T 147 (363)
Q Consensus 147 ~ 147 (363)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 4
No 38
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.16 E-value=0.0023 Score=54.38 Aligned_cols=145 Identities=17% Similarity=0.152 Sum_probs=92.4
Q ss_pred hhhCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH-hc------CChh
Q 017945 51 MLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK-LG------WGLI 123 (363)
Q Consensus 51 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~-~~------~g~~ 123 (363)
+..+.++++.+.++..+.++..--++..+....++++-=.+++......++......+++..+++.. .+ .++.
T Consensus 116 ~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil 195 (345)
T PF07260_consen 116 DLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPIL 195 (345)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHH
Confidence 4458899999999999999888888889999999888766666666666555555555444444421 11 1233
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc
Q 017945 124 GAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGR-LPN 197 (363)
Q Consensus 124 g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~ 197 (363)
|.-.+..+-....+ +-++..-++..+.....++.+...+++++++.+|.+.....+....-+.+.++++ ++.
T Consensus 196 ~~y~g~~vr~t~v~--LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~g 268 (345)
T PF07260_consen 196 ALYAGIAVRFTIVC--LGYYQSIHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSG 268 (345)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 33322222222222 2222222222222222233344578999999999999999999999999999999 553
No 39
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.03 E-value=0.0016 Score=55.30 Aligned_cols=160 Identities=13% Similarity=0.128 Sum_probs=111.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 017945 160 AFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLP-NALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGN 238 (363)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~g~~~ 238 (363)
....++++.++-.|..+++....+..++.+.-+++-. +..+.+|+|+.+..+.-++..+...+-+.....+.+ +
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~ 80 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----K 80 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----h
Confidence 3457899999999999999999999999988888743 333458999999999999888887777666555443 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcc-ccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcch
Q 017945 239 ARAAKFSVLVVSITAVTIGVCCT-ILVLATRYN-FPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQS 316 (363)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 316 (363)
.+ -++........+........ +..-.+++. +.+++.-|+++.+.+...+.++....+++++....++++-=.++++
T Consensus 81 rs-rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RS-RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hh-hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 22 22222222222222222211 111122222 3445667899999999999999999999999999998887666777
Q ss_pred hhHHHHHHH
Q 017945 317 LVAYINLGC 325 (363)
Q Consensus 317 ~~~~~~~~~ 325 (363)
.....++..
T Consensus 160 iV~~aSI~~ 168 (345)
T PF07260_consen 160 IVGSASIAD 168 (345)
T ss_pred EeehHHHHH
Confidence 666666654
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.89 E-value=0.0064 Score=52.01 Aligned_cols=176 Identities=18% Similarity=0.157 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 017945 169 KLSLASAVMLCLEFWYLMLLVVITGR-LPNALIAVDAISVCMNIQGWDAMI-AIGFNAAISVRVSNELGAGNARAAKFSV 246 (363)
Q Consensus 169 ~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~i~~~~~~~~~~~-~~~~~~~~~p~is~~~g~~~~~~~~~~~ 246 (363)
|-+......+............+..+ +| +++.|.++....+.++...+ ..|++++..-..++..++ .++.++..
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~--~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLG--PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 33444455555555555555544454 56 44899999999999888765 677888888888876432 33444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchhhHHHHHHHH
Q 017945 247 LVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCY 326 (363)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 326 (363)
........+.++.......... .+. +++... .+........++..........+++.+|.+.....++...
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~~-----~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIAS-----FFG-NPSLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HcC-CchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333333333322222 333 332221 1122222222578888889999999999999888888875
Q ss_pred HHhhhHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 017945 327 YIVGLPLGILLGFTFGFGAEVTYYLSFSLALLV 359 (363)
Q Consensus 327 ~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~l~ 359 (363)
+..+.....+... +.+..+...+..+..++.
T Consensus 150 -~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 180 (273)
T PF01943_consen 150 -LLSLLLILLLLFL-GSSLWGFLLGLVISSLVS 180 (273)
T ss_pred -HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHH
Confidence 4444444444333 234677766665544443
No 41
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.80 E-value=0.0083 Score=50.71 Aligned_cols=153 Identities=17% Similarity=0.245 Sum_probs=95.6
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017945 190 VITGRLPNALIAVDAISVCMNIQGWDAMI-AIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATR 268 (363)
Q Consensus 190 ~~~~~~~~~~~~~a~~~i~~~~~~~~~~~-~~~~~~~~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (363)
.+...++. ++.|.|+....+..+...+ ..++.+...- ..++|.++.++..+.......+......+......
T Consensus 10 ~lar~l~~--~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (251)
T PF13440_consen 10 LLARYLGP--EDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAILIA 82 (251)
T ss_pred HHHHHCCH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444564 4889999999988887765 3444433322 23466677777766666555555444433322222
Q ss_pred ccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHhcCCCchHH
Q 017945 269 YNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEVT 348 (363)
Q Consensus 269 ~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~ 348 (363)
. .+ ++++ ...++....+..++........+.+++.+|.+.......... .........+.. .+.+..+.
T Consensus 83 ~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~ 151 (251)
T PF13440_consen 83 Y----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLY-LGLNLWSI 151 (251)
T ss_pred H----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHH-HHhhHHHH
Confidence 2 33 3433 334566677788888999999999999999999999888875 333333333332 33377778
Q ss_pred HHHHHHHHHHHH
Q 017945 349 YYLSFSLALLVL 360 (363)
Q Consensus 349 ~~~~~~~~~l~~ 360 (363)
.++..++.++..
T Consensus 152 ~~~~~~~~~~~~ 163 (251)
T PF13440_consen 152 LLAFIISALLAL 163 (251)
T ss_pred HHHHHHHHHHHH
Confidence 777766666543
No 42
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.79 E-value=0.00011 Score=56.66 Aligned_cols=69 Identities=19% Similarity=0.147 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhhHHhHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 017945 289 SILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALLVL 360 (363)
Q Consensus 289 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~l~~ 360 (363)
+++++++.++.+.++...+.+++.||+|..++.++.+. ++++++++++. +++|.+|+.+++.+++....
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~ 70 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILI--PRFGIYGAAIATAISEIVSF 70 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999985 89999999996 55699999999987776653
No 43
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.43 E-value=0.071 Score=46.63 Aligned_cols=274 Identities=14% Similarity=0.129 Sum_probs=152.6
Q ss_pred hhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHh-cc
Q 017945 71 LPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT-KS 149 (363)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~-~~ 149 (363)
...+...+..-....++.+.+|.|.....-.++.++.+.+..++- +.+.+|..++..++..........+..|. +.
T Consensus 138 ~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~ 214 (467)
T COG4267 138 CALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYFKS 214 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 344555666677778999999999999999999988888776644 46899999999999999888877777765 22
Q ss_pred cccCCCCCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH-------HHHHHHHHHHHHHHH---
Q 017945 150 DGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDA-------ISVCMNIQGWDAMIA--- 219 (363)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-------~~i~~~~~~~~~~~~--- 219 (363)
++ ...++.. +..|+ -....+..+..++.-..|+++.-.-++++ .++. |-++.-...+...+.
T Consensus 215 ~~-~i~FdFL--~~~~~----y~SLllIg~FY~lgiwid~FifW~~~~~~-~Iag~~~~S~lYDvpiF~ayl~~iPs~vv 286 (467)
T COG4267 215 SR-RIGFDFL--LYRRK----YPSLLLIGFFYNLGIWIDNFIFWKVPTGI-EIAGPFFASPLYDVPIFYAYLFIIPSMVV 286 (467)
T ss_pred cc-ccceehh--hhhhc----chHHHHHHHHHHhHhhhhheeeEecCCCC-EeecceecchhhhHHHHHHHHHhcchhhe
Confidence 21 1222211 11111 12223444555666666776655544322 2221 222221111211111
Q ss_pred --HHHHHHHHHHHHHHh----c-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHH
Q 017945 220 --IGFNAAISVRVSNEL----G-------AGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETT 286 (363)
Q Consensus 220 --~~~~~~~~p~is~~~----g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 286 (363)
..+.+...+.--+.+ | +++.++.....++.+.-..-+-...++.+..+++.+..++.-++. ..
T Consensus 287 F~i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l 362 (467)
T COG4267 287 FLISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YL 362 (467)
T ss_pred eeeeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HH
Confidence 122222333222221 1 133444455556666666667777888888999999888875553 33
Q ss_pred HHHHHHHHHHHHhhHHhHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHh-cCCCchHHHHHHHHHHHHHH
Q 017945 287 KLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFT-FGFGAEVTYYLSFSLALLVL 360 (363)
Q Consensus 287 ~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~-~~~g~~G~~~~~~~~~~l~~ 360 (363)
+...+-.++............+.--..+-+..+-.+..- .+.+..++++.... +++--+|..+|..+.-++.+
T Consensus 363 ~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv~~ 436 (467)
T COG4267 363 DLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFLELGPGYYGVGFFLASFLYVLVAF 436 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHHHhCccceehHHHHHHHHHHHHHH
Confidence 344444444444444444444444445555555544443 35566666665442 44445566666655554443
No 44
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=97.33 E-value=0.013 Score=55.36 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchh---H
Q 017945 20 MLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVL---V 95 (363)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~---~ 95 (363)
+..+.+...+.+...+++++..+ -..++.++..++++.-..+++...+++++..+|+.+++.+.-++.++....+ .
T Consensus 340 ~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~ 419 (549)
T PF04506_consen 340 QAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLDR 419 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHHH
Confidence 45677788888888888777776 7777777777754433334456778999999999999999999998876554 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017945 96 MAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT 147 (363)
Q Consensus 96 ~~~~~~~~~~~~~i~~~ili~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 147 (363)
......+...+-+..++++... ++|..|..+|..+.-..-.+..+.++++.
T Consensus 420 ~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 420 YNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566667777777765 78999999999999999999888888775
No 45
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.08 E-value=0.088 Score=47.30 Aligned_cols=138 Identities=16% Similarity=0.185 Sum_probs=99.5
Q ss_pred HHHhhhcCC---CcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 017945 8 LCGQAFGAG---SIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPI 83 (363)
Q Consensus 8 ~is~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 83 (363)
+.+|...++ |.+++-+++...+.+...+++++..+ ...+++.+.+.+++.--.+.+...+++++..+|+.+++.+.
T Consensus 305 ~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGit 384 (530)
T KOG2864|consen 305 YFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGIT 384 (530)
T ss_pred HHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHH
Confidence 344444444 44455567778888888888777766 77777787777664333334456799999999999999999
Q ss_pred HHHHHHcCchh---HHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017945 84 QKFLQAQRKVL---VMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT 147 (363)
Q Consensus 84 ~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~ili~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 147 (363)
-+++.+....+ .........++.-++.+++++-. +|..|..+|.++.-.+-.+....++++.
T Consensus 385 EaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 385 EAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988765443 34555666777778888888865 5779998888888877777776666665
No 46
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=69.38 E-value=32 Score=23.28 Aligned_cols=41 Identities=12% Similarity=0.003 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 017945 219 AIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVC 259 (363)
Q Consensus 219 ~~~~~~~~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 259 (363)
..-++......+-+.+.++|+|++++..+++.+++.+-...
T Consensus 33 lGi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 33 LGIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 34455555667778888999999999999988887655443
No 47
>PF13347 MFS_2: MFS/sugar transport protein
Probab=62.77 E-value=1e+02 Score=28.36 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChH
Q 017945 215 DAMIAIGFNAAISVRVSNELGAGNAR 240 (363)
Q Consensus 215 ~~~~~~~~~~~~~p~is~~~g~~~~~ 240 (363)
...+...+.....+.+++++|+++.-
T Consensus 268 ~~~~~~~v~~~~~~~l~~r~gk~~~~ 293 (428)
T PF13347_consen 268 IFFVASIVGSPLWGRLSKRFGKKKVY 293 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHccceeeh
Confidence 44455566677778999998876643
No 48
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=61.11 E-value=78 Score=29.11 Aligned_cols=77 Identities=10% Similarity=0.015 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 017945 171 SLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVS 250 (363)
Q Consensus 171 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~g~~~~~~~~~~~~~~~ 250 (363)
+-|..++.+...+....-..|.....+++.+++-+ .-....|++++++..+++.+|+.+..+-+|...-+.
T Consensus 379 sGpLIiSh~yLLiGcslPIWms~~p~~~~ral~~l---------aGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~ 449 (510)
T KOG2468|consen 379 SGPLIISHFYLLIGCSLPIWMSNSPCGGDRALALL---------AGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTL 449 (510)
T ss_pred CCceeHHHHHHHHhcccchhccCCCCCchhhhhhh---------hhheeeccchHHHHHHhhhhcceecCCCcceeehhh
Confidence 67777777666666666667777766555554433 356778999999999999999998888888776655
Q ss_pred HHHHHH
Q 017945 251 ITAVTI 256 (363)
Q Consensus 251 ~~~~~~ 256 (363)
...+-.
T Consensus 450 Afivs~ 455 (510)
T KOG2468|consen 450 AFIVSS 455 (510)
T ss_pred HHHHHH
Confidence 444433
No 49
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=50.04 E-value=1.1e+02 Score=23.25 Aligned_cols=75 Identities=11% Similarity=0.235 Sum_probs=40.5
Q ss_pred hHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 017945 5 LETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVW-SPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPI 83 (363)
Q Consensus 5 ~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 83 (363)
++-.++|.+|+ +++++....++....+..+...+.... .++ .. +++....-....++...+.....+++..
T Consensus 13 ~~Dii~E~yG~---~~a~~~i~~g~~~~~~~~~~~~~~~~lp~~~--~~---~~~~~~vf~~~~ri~~aS~~a~lisq~~ 84 (145)
T PF02592_consen 13 ITDIISEVYGK---KAARKAIWIGFLANLLFSLLIWIVILLPPAP--FW---QEAFESVFGPTPRIALASLIAFLISQLL 84 (145)
T ss_pred HHHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh--hh---HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34567788874 466777777777776665555443222 222 11 3333333344556666666655555555
Q ss_pred HHHH
Q 017945 84 QKFL 87 (363)
Q Consensus 84 ~~~l 87 (363)
+...
T Consensus 85 d~~i 88 (145)
T PF02592_consen 85 DVYI 88 (145)
T ss_pred HHHH
Confidence 5443
No 50
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=45.42 E-value=2.5e+02 Score=25.92 Aligned_cols=119 Identities=9% Similarity=0.052 Sum_probs=55.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Q 017945 121 GLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALI 200 (363)
Q Consensus 121 g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (363)
.+.....+..+......+....+....-+|+..+..++.+.++.++.++.++|..+.-.. ....+..+.... .
T Consensus 166 si~~lf~agiiPgll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~i-----il~~i~~g~~t~--t 238 (416)
T PF06808_consen 166 SIGDLFIAGIIPGLLLALGLMIYVYFIARKPGLPPEPRASLKERWRAFKRAIPALLIPVI-----ILGGIYLGIFTP--T 238 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhheeeccccCccccchHHHHHHHHHhcchHHHHHHH-----HHHHhhhcccch--h
Confidence 333444444444444444333333333113333333344556677777777765442211 122233444443 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 017945 201 AVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTI 262 (363)
Q Consensus 201 ~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (363)
+.+++++..-+.--... +++.+.++..+..+++.+....+......
T Consensus 239 eaa~~~~~~~l~i~~~~----------------~~~~~~~~l~~~l~~~~~~~~~i~~iia~ 284 (416)
T PF06808_consen 239 EAAAVAVVYALVIGLFV----------------YRRLSWKDLWRALVETARTTGMILFIIAA 284 (416)
T ss_pred hhhhhhHHHHHHHHHhh----------------hcccChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44555543332111000 44566677777777777766655544433
No 51
>PRK10739 putative antibiotic transporter; Provisional
Probab=42.74 E-value=1.8e+02 Score=23.58 Aligned_cols=50 Identities=6% Similarity=-0.010 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHH
Q 017945 227 SVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEA 280 (363)
Q Consensus 227 ~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 280 (363)
.|..-..-++.+.++.|+..++....++.+ ...+.+.++.+.++|+-+-+
T Consensus 21 ipiflslt~~~~~~~r~~ia~~a~~~a~~i----ll~f~~~G~~iL~~fGIsl~ 70 (197)
T PRK10739 21 LPIFMSVLKHLEPKRRRAIMIRELLIALLV----MLVFLFAGEKILAFLNLRTE 70 (197)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCHH
Confidence 455555556677788888888776655544 44677888999999875543
No 52
>COG1738 yhhQ Uncharacterized member of the PurR regulon [General function prediction only]
Probab=42.42 E-value=2e+02 Score=24.04 Aligned_cols=99 Identities=10% Similarity=0.091 Sum_probs=58.3
Q ss_pred HHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 017945 6 ETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQK 85 (363)
Q Consensus 6 ~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~ 85 (363)
+-.+.|.+|+ +++++.+..++...++.++...+.+.+.+ ...-..++...+.-....|+...+.....+++...-
T Consensus 69 tD~~~e~yG~---~~Ark~V~~gf~~~lv~~~l~~~~~~~~~--~~~~~~~~a~~~~f~~~~RI~lASl~AyivsQ~~Dv 143 (233)
T COG1738 69 TDLTVEIYGK---KEARKAVFLGFFSALVFSILTQIALHFPP--SGSDEAQEALAALFSFVPRIALASLLAYIVSQLLDV 143 (233)
T ss_pred HHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 3466777775 46778888888888877777666544333 111112233333334567888888888888887764
Q ss_pred HH-HHcCch-------hHHHHHHHHHHHHHHH
Q 017945 86 FL-QAQRKV-------LVMAWISAIVLVLHAL 109 (363)
Q Consensus 86 ~l-~~~~~~-------~~~~~~~~~~~~~~~i 109 (363)
.. +-.+|. ..+..++.+++++..+
T Consensus 144 ~vf~~lkr~~~~k~lWlr~~~St~vsq~iDT~ 175 (233)
T COG1738 144 WVFNRLKRRTGGKSLWLRPNASTLVSQLIDTV 175 (233)
T ss_pred HHHHHHHHhcCCceEEeecchhHHHHhhhhHH
Confidence 33 333332 2345566666665544
No 53
>COG4267 Predicted membrane protein [Function unknown]
Probab=41.85 E-value=2.7e+02 Score=25.32 Aligned_cols=125 Identities=18% Similarity=0.066 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHH
Q 017945 217 MIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITV 296 (363)
Q Consensus 217 ~~~~~~~~~~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~ 296 (363)
.++.+++-...-.+|...=+||.+++.....-........+..+..... ...+++ ...+-...+...
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf--------~~~~~~-----si~yk~l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF--------FVNNQY-----SIVYKILACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh--------hhcCch-----hHHHHHHHHHHH
Confidence 4556677777777787777778888777776666666555554442111 112222 222233344555
Q ss_pred HHhhHHhHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 017945 297 LMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEVTYYLSFSLALL 358 (363)
Q Consensus 297 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~~~~~~~~l 358 (363)
...+..-+....+.+++|.|.....-+.+. .+.+.+++++-+ +++.|.-++.-++-.+
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~~---~~ie~lLL~~~IGi~~ 199 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFLK---SPIEGLLLTLDIGIFI 199 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---hHHHHHHHHHHHhHHH
Confidence 566666777788899999998888777774 677777766644 4888888777554443
No 54
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=39.17 E-value=2.6e+02 Score=24.98 Aligned_cols=39 Identities=18% Similarity=0.034 Sum_probs=24.4
Q ss_pred CCCCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 017945 154 SGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLP 196 (363)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 196 (363)
+..++..+...+|.+|.++|..+ ..+-++....-.++++
T Consensus 79 ~~l~~~i~~~~~~~lk~~vPa~i----YalqNnl~yval~~ld 117 (345)
T KOG2234|consen 79 KSLSKEILAAPRETLKVSVPALI----YALQNNLQYVALSNLD 117 (345)
T ss_pred hhcCHHHHhChHHHHHHHHHHHH----HHHhhhHHHHHHhcCC
Confidence 34445556677799999999986 3333344444455554
No 55
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=38.43 E-value=3.5e+02 Score=25.52 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=18.2
Q ss_pred HHcCchhHHHHHHHHHHHHHHHHHHHH
Q 017945 88 QAQRKVLVMAWISAIVLVLHALFSWLL 114 (363)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~i~~~il 114 (363)
+-+||.+...+.+..+.+-+.+...+.
T Consensus 143 d~~ER~~l~s~R~~~~~~g~~l~~~~~ 169 (467)
T COG2211 143 DPQERASLTSWRMVFASLGGLLVAVLF 169 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888887776665554443
No 56
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=37.09 E-value=2.6e+02 Score=23.76 Aligned_cols=83 Identities=10% Similarity=0.007 Sum_probs=45.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcch
Q 017945 237 GNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQS 316 (363)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 316 (363)
+..+.+++..-.+..++....+.=++....+++ ..++.++.+..+.+...+.... +.++..++......-..+.|.+
T Consensus 109 ds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg~~fW~~~-s~~f~~vY~~I~~L~~~r~r~~ 185 (261)
T PF10160_consen 109 DSRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGGWGFWFIS-SLVFALVYGFILILTPLRWRDR 185 (261)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCCeehHHHH-HHHHHHHHHHHHHHHhcccccc
Confidence 456777777777777777777777777777776 5556555554444443333322 2333333333322355555555
Q ss_pred hhHHHH
Q 017945 317 LVAYIN 322 (363)
Q Consensus 317 ~~~~~~ 322 (363)
.|.+-+
T Consensus 186 LPar~S 191 (261)
T PF10160_consen 186 LPARPS 191 (261)
T ss_pred CCCCcc
Confidence 544433
No 57
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=36.83 E-value=2.3e+02 Score=23.08 Aligned_cols=48 Identities=13% Similarity=-0.073 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCc
Q 017945 227 SVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNS 278 (363)
Q Consensus 227 ~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 278 (363)
.|..-..-+..+.++.|+..++....++.+ ...+.++++.+.++|+-+
T Consensus 21 ip~f~~lt~~~~~~~r~~ia~~a~~~a~~i----ll~f~~~G~~iL~~fgIs 68 (203)
T PF01914_consen 21 IPIFLSLTKGMSPKERRRIARRASIIAFII----LLIFAFFGQLILNFFGIS 68 (203)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCC
Confidence 344555555677777788887777655554 456667888888888644
No 58
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=36.69 E-value=2.3e+02 Score=23.05 Aligned_cols=51 Identities=14% Similarity=-0.070 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHH
Q 017945 226 ISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEA 280 (363)
Q Consensus 226 ~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 280 (363)
..|.....-++.+.++.++..++....++.+ ...+.+.++.+.++|+-+-+
T Consensus 23 ~ipvfl~lt~~~~~~~r~~ia~~~~l~a~~i----ll~f~~~G~~iL~~fgIsl~ 73 (201)
T TIGR00427 23 NIPIFISLTEYYTAAERNKIAKKANISSFII----LLIFLVFGDTILKLFGISID 73 (201)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCHH
Confidence 3455555666677778888877766555444 44677888899998875543
No 59
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=34.38 E-value=2.3e+02 Score=23.42 Aligned_cols=60 Identities=5% Similarity=-0.028 Sum_probs=31.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhCCCh---------HHHHHHHHHHHHHhhHHHHHH
Q 017945 19 RMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETA---------EISNAAGKFALWMLPQLFAYA 78 (363)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~l~i~~~~~~~~~ 78 (363)
++..+.+..++..++.+..+++++.....|+.++++.+. ...+....|+++++.++|...
T Consensus 144 ~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 144 QKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 334445555555555555555555566666666665321 111223456666666666544
No 60
>PF14184 YrvL: Regulatory protein YrvL
Probab=34.05 E-value=2e+02 Score=21.58 Aligned_cols=92 Identities=16% Similarity=0.167 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhCCChH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Q 017945 26 QRSWVILLITSCVLSPLYVWSPPVLMLFGETAE-ISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVL 104 (363)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 104 (363)
...+.......++.+.......-+.+.+|.+-+ ..+...-.+-....+.|+..+...+...+.-.+-.+... .....
T Consensus 5 ~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~--~~l~~ 82 (132)
T PF14184_consen 5 IIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLF--ILLAF 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHH--HHHHH
Confidence 334444445555555556666677788877633 333333334455678888888777776665553333322 34455
Q ss_pred HHHHHHHHHHHHHhc
Q 017945 105 VLHALFSWLLILKLG 119 (363)
Q Consensus 105 ~~~~i~~~ili~~~~ 119 (363)
.+....++..++..+
T Consensus 83 ~id~~~t~~~i~~aD 97 (132)
T PF14184_consen 83 IIDFLFTWITIYTAD 97 (132)
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777777776543
No 61
>PRK11111 hypothetical protein; Provisional
Probab=34.00 E-value=2.7e+02 Score=22.97 Aligned_cols=48 Identities=15% Similarity=0.010 Sum_probs=31.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcH
Q 017945 228 VRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSE 279 (363)
Q Consensus 228 p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 279 (363)
|..-..-++.+.++.++..++....++.+ ...+.+.++++.++|+-+-
T Consensus 28 piflslt~~~s~~~r~~ia~~a~l~a~~i----ll~f~~~G~~iL~~fGIsl 75 (214)
T PRK11111 28 PVFISMTSHQTAAERNKTNLTANLSVAII----LLISLFLGDFILNLFGISI 75 (214)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCH
Confidence 44444455567777777777766554443 4466778889988886543
No 62
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=33.89 E-value=82 Score=23.28 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 017945 123 IGAAITLNLSWWLIVILQLLYIFIT 147 (363)
Q Consensus 123 ~g~~~a~~i~~~~~~~~~~~~~~~~ 147 (363)
.|..+|.+.+-+...++..++++|+
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443333333444444444
No 63
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=33.85 E-value=2.9e+02 Score=23.37 Aligned_cols=13 Identities=0% Similarity=0.056 Sum_probs=6.6
Q ss_pred HHHHHhhhcCCCc
Q 017945 6 ETLCGQAFGAGSI 18 (363)
Q Consensus 6 ~~~is~~~~~~~~ 18 (363)
..-..+.++.+++
T Consensus 104 ~~~ln~i~~~~~~ 116 (259)
T TIGR00765 104 DSTLNKIWRVKPR 116 (259)
T ss_pred HHHHHHHhCCCCC
Confidence 3445556665443
No 64
>TIGR00697 conserved hypothetical integral membrane protein. All known members of this family are proteins or 210-250 amino acids in length. Conserved regions of hydrophobicity suggest that all members of the family are integral membrane proteins.
Probab=30.30 E-value=3e+02 Score=22.42 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=37.2
Q ss_pred HHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017945 6 ETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQ 84 (363)
Q Consensus 6 ~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~ 84 (363)
+-.++|.+|+ +++++.+..++...+...+...+.....++ .....+++....-....|+...+......++..+
T Consensus 46 ~Dii~E~yG~---~~A~~~V~~gf~~~i~~~~~~~~~~~lpp~--~~~~~~~af~~vf~~~~ri~~aS~~Aylisq~~d 119 (202)
T TIGR00697 46 TDVLREIYGK---KDARKAIFVGFISALLFSVLTQLHLFFIPS--PGDESQTHFEALFSSSPRIALASLVAYIVSQLLD 119 (202)
T ss_pred HHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4567788875 466777777777666666555444222110 0001122222222333455555555555555554
No 65
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=30.13 E-value=3.3e+02 Score=22.86 Aligned_cols=64 Identities=11% Similarity=-0.057 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcccccc
Q 017945 211 IQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCC-TILVLATRYNFPFL 274 (363)
Q Consensus 211 ~~~~~~~~~~~~~~~~~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~l 274 (363)
+.+....+...+++...++.-+...++|.++.++................ ......++.+..+-
T Consensus 105 lg~~l~~~~~~~n~~~~~~adk~ae~gn~~~i~~~~~~~~~~~~~~~~v~~~fl~~~~G~~~v~~ 169 (238)
T PF03609_consen 105 LGQQLDNLLRTINSFFVHRADKAAEEGNYKKINRIHWIGPILFFLIYFVPPVFLAVYFGSDAVQA 169 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34445566677888888888888899999999888666654444443333 44434444444443
No 66
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=28.59 E-value=1.4e+02 Score=20.16 Aligned_cols=31 Identities=10% Similarity=0.043 Sum_probs=20.0
Q ss_pred HHHhhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 017945 8 LCGQAFGAGSIRMLGVYMQRSWVILLITSCV 38 (363)
Q Consensus 8 ~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (363)
.+-+.+.++|.|++++.-+++..++.+..++
T Consensus 43 kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 43 KVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred hhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3445566778888877777777666554433
No 67
>PRK10995 inner membrane protein; Provisional
Probab=26.88 E-value=3.7e+02 Score=22.27 Aligned_cols=49 Identities=12% Similarity=-0.015 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcH
Q 017945 227 SVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSE 279 (363)
Q Consensus 227 ~p~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 279 (363)
.|..-..-++.+.++.++..++....++.+. .++.+.++.+.+.|.-+.
T Consensus 25 ~pif~~lt~~~~~~~r~~ia~~~~~~a~~il----l~f~~~G~~il~~fgIs~ 73 (221)
T PRK10995 25 VALFLGLSGNMTPEERNRQALMASVYVFAIM----MVAFYAGQLVMSTFGISI 73 (221)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCH
Confidence 3445555556677788888877765555544 456677788888886543
No 68
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=22.63 E-value=5.9e+02 Score=23.18 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=29.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhh
Q 017945 17 SIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLML 52 (363)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~ 52 (363)
++++.+++.+.+...+.+...+...+ .....|+...
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~ 125 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQ 125 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678999999999999999888776 6777777663
No 69
>PF13197 DUF4013: Protein of unknown function (DUF4013)
Probab=20.95 E-value=4.1e+02 Score=20.67 Aligned_cols=29 Identities=10% Similarity=0.007 Sum_probs=18.1
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017945 159 LAFADLWAFVKLSLASAVMLCLEFWYLML 187 (363)
Q Consensus 159 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 187 (363)
+++++++++++-|+-..+..+........
T Consensus 38 P~~~~~~~l~~~G~~~~ii~ivy~i~~~i 66 (169)
T PF13197_consen 38 PEFNDWGELFVDGLKAFIISIVYSIPPII 66 (169)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777888777776665555444333
No 70
>PHA03093 EEV glycoprotein; Provisional
Probab=20.54 E-value=2.5e+02 Score=22.37 Aligned_cols=34 Identities=9% Similarity=0.123 Sum_probs=24.2
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017945 232 NELGAGNARAAKFSVLVVSITAVTIGVCCTILVL 265 (363)
Q Consensus 232 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (363)
..+.+++..+.+|.+..++|+..+++++..+.+.
T Consensus 21 ~klkkk~~~kk~r~i~i~~RisiiiSIlsL~~i~ 54 (185)
T PHA03093 21 DKLKKKKNKKKVKCIGICIRISIIISILSLIAIT 54 (185)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555568888999999998888876655544
Done!