Query 017945
Match_columns 363
No_of_seqs 186 out of 1875
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 07:26:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 2.2E-43 7.5E-48 326.2 29.0 356 2-359 68-435 (460)
2 3mkt_A Multi antimicrobial ext 99.8 3E-19 1E-23 164.5 16.3 198 158-359 5-206 (460)
3 2jwa_A Receptor tyrosine-prote 37.7 55 0.0019 18.4 4.3 12 137-148 28-39 (44)
4 2ks1_B Epidermal growth factor 32.3 69 0.0024 17.9 4.2 7 141-147 32-38 (44)
5 2k1k_A Ephrin type-A receptor 32.0 47 0.0016 17.9 2.7 14 123-136 14-27 (38)
6 1wrg_A LH-1, light-harvesting 13.7 2.2E+02 0.0077 16.8 3.6 36 237-272 14-49 (55)
7 1nkz_B Light-harvesting protei 13.6 1.9E+02 0.0065 15.9 4.7 35 237-271 6-40 (41)
8 1dx7_A Light-harvesting protei 13.6 2.1E+02 0.0071 16.3 3.1 34 237-270 14-47 (48)
9 1lgh_B LH II, B800/850, light 13.6 2E+02 0.0069 16.1 4.7 34 237-270 11-44 (45)
10 3hd7_B Syntaxin-1A; membrane p 11.2 1.8E+02 0.0061 19.9 2.8 42 235-276 68-109 (109)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=2.2e-43 Score=326.22 Aligned_cols=356 Identities=20% Similarity=0.308 Sum_probs=327.3
Q ss_pred cchhHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhCCChHHHHHHHHHHHHHhhHHHHHHHHH
Q 017945 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNF 81 (363)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 81 (363)
+++..+.++|++|++|+|+.++..++++.+..+++++..++..+.+++..+++.+++..+.+..|+++..++.++..+..
T Consensus 68 ~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 147 (460)
T 3mkt_A 68 LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQ 147 (460)
T ss_dssp HHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999988777788899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH-h---cCChhhHHHHHHHHHHHHHHHHHHHHHHhcccc--c-CC
Q 017945 82 PIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK-L---GWGLIGAAITLNLSWWLIVILQLLYIFITKSDG--A-WS 154 (363)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ili~~-~---~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~--~-~~ 154 (363)
..++.+|+.||+|.++..++++.++|+++++++++. + ++|+.|+++|+.+++.+..+...++.++++... + ++
T Consensus 148 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (460)
T 3mkt_A 148 ALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE 227 (460)
T ss_dssp HHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSC
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhh
Confidence 999999999999999999999999999999999975 3 699999999999999999998888877663221 1 12
Q ss_pred CCCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017945 155 GFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNEL 234 (363)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~ 234 (363)
++.+.+++..|++++++.|..++++...+....++.+++++|++ ++++|++++++.++...+..+++++..|.+++++
T Consensus 228 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~--~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~ 305 (460)
T 3mkt_A 228 TFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL 305 (460)
T ss_dssp CCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23345667899999999999999999999999999999999854 8999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCc
Q 017945 235 GAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGW 314 (363)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~ 314 (363)
|+||.|+.++..+++.+..+.++++.++++.++++++..+|.+|+|+.+.+..++++++++.++++++....+++++.||
T Consensus 306 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~ 385 (460)
T 3mkt_A 306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKD 385 (460)
T ss_dssp HSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGST
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhhhHHHHHHHHh----cC-CCchHHHHHHHHHHHHH
Q 017945 315 QSLVAYINLGCYYIVGLPLGILLGFT----FG-FGAEVTYYLSFSLALLV 359 (363)
Q Consensus 315 ~~~~~~~~~~~~~~~~i~~~~~l~~~----~~-~g~~G~~~~~~~~~~l~ 359 (363)
+|.+++.++.+.|++++|+++++... ++ +|+.|+|++..++..+.
T Consensus 386 ~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~ 435 (460)
T 3mkt_A 386 MTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAA 435 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHH
Confidence 99999999999889999999999987 66 89999999998776654
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.81 E-value=3e-19 Score=164.55 Aligned_cols=198 Identities=15% Similarity=0.114 Sum_probs=180.8
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 017945 158 WLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAG 237 (363)
Q Consensus 158 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~p~is~~~g~~ 237 (363)
...++..|++++.++|..++++...+...+|+.+++++|++ ++++++.+.++..+...+..+++.+..|.+++++|++
T Consensus 5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~--~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~ 82 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAI--DMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAG 82 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTT--TSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34567899999999999999999999999999999998854 8899999999998888899999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhhcCcchh
Q 017945 238 NARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSL 317 (363)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 317 (363)
|.|+.++..+++....+..+++.+++ ..+.+++..++..|+|..+.+..+++++.++.++........+.+++.||+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 161 (460)
T 3mkt_A 83 RQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKP 161 (460)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTT
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999998765 77888999999888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHh----cCCCchHHHHHHHHHHHHH
Q 017945 318 VAYINLGCYYIVGLPLGILLGFT----FGFGAEVTYYLSFSLALLV 359 (363)
Q Consensus 318 ~~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~~~~~~~~l~ 359 (363)
++..++.+. ++++++++++... +++|+.|+++++.++.++.
T Consensus 162 ~~~~~~~~~-~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~ 206 (460)
T 3mkt_A 162 AMVIGFIGL-LLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIM 206 (460)
T ss_dssp THHHHHHHH-HHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHH
Confidence 999999986 7899999998865 3799999999987766554
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=37.70 E-value=55 Score=18.36 Aligned_cols=12 Identities=8% Similarity=-0.081 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhc
Q 017945 137 VILQLLYIFITK 148 (363)
Q Consensus 137 ~~~~~~~~~~~~ 148 (363)
.+....+.+|++
T Consensus 28 ~l~~~~~~RRR~ 39 (44)
T 2jwa_A 28 GVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHhheehhh
Confidence 334445555553
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=32.26 E-value=69 Score=17.93 Aligned_cols=7 Identities=14% Similarity=0.069 Sum_probs=2.9
Q ss_pred HHHHHHh
Q 017945 141 LLYIFIT 147 (363)
Q Consensus 141 ~~~~~~~ 147 (363)
+++.+++
T Consensus 32 ~~~~RRr 38 (44)
T 2ks1_B 32 GLFMRRR 38 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 3444443
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=31.96 E-value=47 Score=17.91 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=5.7
Q ss_pred hhHHHHHHHHHHHH
Q 017945 123 IGAAITLNLSWWLI 136 (363)
Q Consensus 123 ~g~~~a~~i~~~~~ 136 (363)
.|+..+.+++-.+.
T Consensus 14 AGiVvG~v~gv~li 27 (38)
T 2k1k_A 14 VAVIFGLLLGAALL 27 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHH
Confidence 34444444433333
No 6
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=13.74 E-value=2.2e+02 Score=16.76 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 017945 237 GNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFP 272 (363)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 272 (363)
++-++.++.+.++...-+.++++.=+..+..++++.
T Consensus 14 ~EAqEfH~~f~~~~~~F~~iAvvAH~L~~~wrPWl~ 49 (55)
T 1wrg_A 14 GEAKEFHKIFTSSILVFFGVAAFAHLLVWIWRPWVP 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 456888899999999988888888888887777664
No 7
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=13.63 E-value=1.9e+02 Score=15.87 Aligned_cols=35 Identities=6% Similarity=0.024 Sum_probs=28.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 017945 237 GNARAAKFSVLVVSITAVTIGVCCTILVLATRYNF 271 (363)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 271 (363)
++-++.++.+.++.+.-..++++.-+..+...+++
T Consensus 6 ~EA~EfH~~~~~~~~~F~~iA~vAH~l~w~wrPWl 40 (41)
T 1nkz_B 6 EQSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34578888999999988888888888888777664
No 8
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=13.63 E-value=2.1e+02 Score=16.34 Aligned_cols=34 Identities=9% Similarity=-0.051 Sum_probs=26.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 017945 237 GNARAAKFSVLVVSITAVTIGVCCTILVLATRYN 270 (363)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (363)
++-++.++.+.++.+.-..++++.-+..+...++
T Consensus 14 ~EA~EfH~~~~~~~~~F~~iA~vAH~l~w~wrPW 47 (48)
T 1dx7_A 14 EQAQELHSVYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHTHHHHHHHHHHTTHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4457888899999988888888888777776655
No 9
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=13.55 E-value=2e+02 Score=16.14 Aligned_cols=34 Identities=12% Similarity=-0.006 Sum_probs=26.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 017945 237 GNARAAKFSVLVVSITAVTIGVCCTILVLATRYN 270 (363)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (363)
++-++.++.+.++.+.-..++++.-+..+...++
T Consensus 11 ~EA~EfH~~~~~~~~~F~~iA~vAH~L~~~wrPW 44 (45)
T 1lgh_B 11 EEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 44 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3457888888888888888888888777776665
No 10
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=11.25 E-value=1.8e+02 Score=19.91 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=0.0
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 017945 235 GAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFT 276 (363)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 276 (363)
|.++.+++.++-++..+...++.+++.++..+.+-.+...++
T Consensus 68 g~~eL~kA~~yqk~~rkk~~i~l~~~~i~~~i~~~~~~~~~~ 109 (109)
T 3hd7_B 68 AVSDTKKAVKYQSKARRKKIMIIICCVILGIIIASTIGGIFG 109 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhccCcceehHHHHHHHHHHHHHHhccccC
Done!