Query 017945
Match_columns 363
No_of_seqs 186 out of 1875
Neff 10.8
Searched_HMMs 13730
Date Mon Mar 25 07:26:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017945.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017945hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkzb_ f.3.1.1 (B:) Light-har 19.1 58 0.0043 16.3 4.7 34 238-271 7-40 (41)
2 d1m56d_ f.23.8.1 (D:) Bacteria 18.3 64 0.0047 16.4 3.9 32 233-264 3-34 (42)
3 d1ijdb_ f.3.1.1 (B:) Light-har 11.2 1E+02 0.0075 15.3 4.7 33 237-269 7-39 (40)
4 d1lghb_ f.3.1.1 (B:) Light-har 9.6 1.3E+02 0.0096 15.4 4.7 34 237-270 9-42 (43)
5 d1qled_ f.23.8.1 (D:) Bacteria 7.5 1.7E+02 0.012 14.9 4.2 31 234-264 5-35 (43)
6 d1jo5a_ f.3.1.1 (A:) Light-har 6.5 2E+02 0.015 15.0 3.2 34 237-270 14-47 (48)
7 d2o3fa1 a.4.1.20 (A:1-83) Puta 3.6 4.2E+02 0.03 15.3 3.0 30 220-249 46-75 (83)
8 d1j1va_ a.4.12.2 (A:) Chromoso 3.5 4.7E+02 0.034 15.4 3.5 31 218-248 40-70 (94)
9 d2fxta1 d.17.4.13 (A:234-425) 2.9 6.1E+02 0.045 17.3 3.7 34 217-250 55-88 (192)
10 d1su0b_ d.224.1.2 (B:) IscU ho 2.8 6.7E+02 0.049 15.8 5.0 29 221-249 61-89 (136)
No 1
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=19.14 E-value=58 Score=16.30 Aligned_cols=34 Identities=6% Similarity=0.033 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 017945 238 NARAAKFSVLVVSITAVTIGVCCTILVLATRYNF 271 (363)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 271 (363)
+.|+.++......+....+++..-+..+...+++
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4588999999999999888888777766665543
No 2
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=18.27 E-value=64 Score=16.41 Aligned_cols=32 Identities=6% Similarity=-0.087 Sum_probs=19.0
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017945 233 ELGAGNARAAKFSVLVVSITAVTIGVCCTILV 264 (363)
Q Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (363)
..|+-|.+...|.+.-.+++..-.++.+.+++
T Consensus 3 kHG~MDi~vQEKTF~gFik~~t~~~i~~i~~l 34 (42)
T d1m56d_ 3 VAGSMDITQQEKTFAGFVRMVTWAAVVIVAAL 34 (42)
T ss_dssp CTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777666666655544443333
No 3
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=11.25 E-value=1e+02 Score=15.26 Aligned_cols=33 Identities=12% Similarity=0.043 Sum_probs=24.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 017945 237 GNARAAKFSVLVVSITAVTIGVCCTILVLATRY 269 (363)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (363)
++.|+.++......+....+++..-+......+
T Consensus 7 ~eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 7 EQAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 345889999999999888888777665554443
No 4
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=9.58 E-value=1.3e+02 Score=15.37 Aligned_cols=34 Identities=12% Similarity=-0.006 Sum_probs=25.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 017945 237 GNARAAKFSVLVVSITAVTIGVCCTILVLATRYN 270 (363)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (363)
++-++.++.+.++...-..+++..-+..+...++
T Consensus 9 ~EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 9 EEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3457888888888888888888877777766654
No 5
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=7.48 E-value=1.7e+02 Score=14.90 Aligned_cols=31 Identities=10% Similarity=0.045 Sum_probs=17.9
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017945 234 LGAGNARAAKFSVLVVSITAVTIGVCCTILV 264 (363)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (363)
.|+-|.+...+.+...+++..-.++.+.+++
T Consensus 5 HG~MDi~vQEkTF~gFi~~~t~~~i~~i~~l 35 (43)
T d1qled_ 5 HGEMDIRHQQATFAGFIKGATWVSILSIAVL 35 (43)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666677777666666655544443333
No 6
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.46 E-value=2e+02 Score=15.00 Aligned_cols=34 Identities=9% Similarity=-0.051 Sum_probs=24.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 017945 237 GNARAAKFSVLVVSITAVTIGVCCTILVLATRYN 270 (363)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (363)
++-++.++.+.++...-..++++.-+..+..+++
T Consensus 14 ~EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrPW 47 (48)
T d1jo5a_ 14 EQAQELHSVYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3457788888888888888887777777766654
No 7
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=3.64 E-value=4.2e+02 Score=15.29 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 017945 220 IGFNAAISVRVSNELGAGNARAAKFSVLVV 249 (363)
Q Consensus 220 ~~~~~~~~p~is~~~g~~~~~~~~~~~~~~ 249 (363)
.+++.+...+.++.+|=+.+++.|..+.+-
T Consensus 46 ~~vS~sTi~Rf~kklG~~gf~e~k~~l~~e 75 (83)
T d2o3fa1 46 ANSSDAAVIRLCKSLGLKGFQDLKMRVAGD 75 (83)
T ss_dssp TTCCHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 367778888999999999999998877654
No 8
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=3.55 E-value=4.7e+02 Score=15.42 Aligned_cols=31 Identities=6% Similarity=0.100 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 017945 218 IAIGFNAAISVRVSNELGAGNARAAKFSVLV 248 (363)
Q Consensus 218 ~~~~~~~~~~p~is~~~g~~~~~~~~~~~~~ 248 (363)
+..=......|.+++.+|.+|+.-+-...++
T Consensus 40 L~r~~~~~sl~~Ig~~fg~rdHsTV~~a~kk 70 (94)
T d1j1va_ 40 LAKELTNHSLPEIGDAFGGRDHTTVLHACRK 70 (94)
T ss_dssp HHHHHSCCCHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHhCCCCchHHHHHHHH
Confidence 3344555667888999988888777766665
No 9
>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.87 E-value=6.1e+02 Score=17.35 Aligned_cols=34 Identities=9% Similarity=0.002 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 017945 217 MIAIGFNAAISVRVSNELGAGNARAAKFSVLVVS 250 (363)
Q Consensus 217 ~~~~~~~~~~~p~is~~~g~~~~~~~~~~~~~~~ 250 (363)
-+..+.-.+..|++-+++.++|.+..+.+.....
T Consensus 55 ~Fl~gak~~~~p~Il~Af~~GD~~~Lk~lls~~v 88 (192)
T d2fxta1 55 SFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAP 88 (192)
T ss_dssp HHHHHHHHTHHHHHHHHHHTTCHHHHHHHBCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhHHH
Confidence 4566777788899999999999999988765443
No 10
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}
Probab=2.81 E-value=6.7e+02 Score=15.82 Aligned_cols=29 Identities=10% Similarity=-0.002 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 017945 221 GFNAAISVRVSNELGAGNARAAKFSVLVV 249 (363)
Q Consensus 221 ~~~~~~~p~is~~~g~~~~~~~~~~~~~~ 249 (363)
+++++...++++....++.+++.+.....
T Consensus 61 ai~~ASasil~e~i~gk~~~e~~~l~~~~ 89 (136)
T d1su0b_ 61 TISTASSSMMTDAVIGKSKEEALALADIF 89 (136)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 57788888889988888899988876553
Done!