Query 017948
Match_columns 363
No_of_seqs 261 out of 1421
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:50:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 4.5E-35 9.7E-40 266.4 4.6 171 1-177 1-177 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 1.6E-30 3.4E-35 204.4 2.5 73 2-76 1-73 (77)
3 cd00266 MADS_SRF_like SRF-like 99.9 1.9E-28 4.2E-33 195.3 3.7 79 2-81 1-79 (83)
4 smart00432 MADS MADS domain. 99.9 4.5E-27 9.7E-32 175.3 3.0 58 2-59 1-58 (59)
5 cd00120 MADS MADS: MCM1, Agamo 99.9 1.6E-26 3.6E-31 172.4 2.5 58 2-59 1-58 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 4.7E-25 1E-29 159.6 -3.6 51 9-59 1-51 (51)
7 KOG0015 Regulator of arginine 99.7 4.9E-19 1.1E-23 167.5 1.5 66 2-69 63-128 (338)
8 COG5068 ARG80 Regulator of arg 99.3 2.3E-13 5E-18 134.5 1.6 65 1-67 81-145 (412)
9 PF01486 K-box: K-box region; 99.3 5.1E-12 1.1E-16 104.0 7.8 81 112-192 12-95 (100)
10 PF07106 TBPIP: Tat binding pr 88.2 4.7 0.0001 35.9 9.7 60 110-169 107-166 (169)
11 PRK04098 sec-independent trans 82.4 3.6 7.9E-05 36.8 6.0 82 42-159 14-95 (158)
12 PF10584 Proteasome_A_N: Prote 81.2 0.58 1.3E-05 28.5 0.4 14 42-55 2-15 (23)
13 KOG4603 TBP-1 interacting prot 79.3 45 0.00098 30.4 11.8 67 110-177 114-180 (201)
14 PHA03155 hypothetical protein; 74.3 24 0.00051 29.9 8.1 57 112-168 8-65 (115)
15 PF03233 Cauli_AT: Aphid trans 66.3 40 0.00087 30.3 8.3 46 114-168 113-158 (163)
16 PF05812 Herpes_BLRF2: Herpesv 65.8 40 0.00088 28.7 7.8 56 113-168 4-64 (118)
17 PRK04654 sec-independent trans 58.8 20 0.00043 33.6 5.2 27 43-73 15-41 (214)
18 PHA03162 hypothetical protein; 57.1 77 0.0017 27.6 8.1 57 112-168 13-74 (135)
19 PRK01919 tatB sec-independent 56.1 33 0.00072 31.0 6.0 27 43-73 15-41 (169)
20 PF14723 SSFA2_C: Sperm-specif 55.3 37 0.0008 30.9 6.1 19 148-166 159-177 (179)
21 COG3883 Uncharacterized protei 54.0 80 0.0017 30.7 8.6 30 147-177 79-108 (265)
22 PHA02592 52 DNA topisomerase I 53.2 2.5E+02 0.0053 29.3 12.6 29 42-74 298-326 (439)
23 PF07544 Med9: RNA polymerase 47.8 93 0.002 24.5 6.8 28 115-142 24-51 (83)
24 PF06008 Laminin_I: Laminin Do 45.9 1.7E+02 0.0037 27.8 9.7 56 113-168 88-143 (264)
25 PF13870 DUF4201: Domain of un 44.9 1.1E+02 0.0023 27.4 7.6 58 114-171 8-65 (177)
26 PF11559 ADIP: Afadin- and alp 43.5 2.2E+02 0.0047 24.6 11.6 50 114-171 68-117 (151)
27 PF15030 DUF4527: Protein of u 42.4 1.4E+02 0.0029 28.8 8.0 55 116-170 13-69 (277)
28 PF07106 TBPIP: Tat binding pr 41.9 2.1E+02 0.0046 25.2 9.1 27 145-171 109-135 (169)
29 PF09730 BicD: Microtubule-ass 41.2 2.6E+02 0.0056 31.1 11.0 48 113-172 122-176 (717)
30 TIGR00634 recN DNA repair prot 39.7 2.2E+02 0.0049 30.2 10.3 63 6-75 95-157 (563)
31 KOG4603 TBP-1 interacting prot 39.4 88 0.0019 28.6 5.9 61 110-170 77-141 (201)
32 TIGR03545 conserved hypothetic 38.2 2.5E+02 0.0054 30.2 10.2 31 25-56 88-120 (555)
33 COG1579 Zn-ribbon protein, pos 36.4 3.9E+02 0.0085 25.6 10.8 53 114-166 54-107 (239)
34 KOG0804 Cytoplasmic Zn-finger 34.8 5.6E+02 0.012 26.9 12.1 16 148-163 417-432 (493)
35 PF06657 Cep57_MT_bd: Centroso 34.1 2.3E+02 0.005 22.2 8.1 53 116-171 21-73 (79)
36 COG4575 ElaB Uncharacterized c 34.0 2E+02 0.0044 24.0 6.9 50 115-171 11-60 (104)
37 KOG0933 Structural maintenance 33.8 6.2E+02 0.013 29.4 12.5 26 47-74 654-679 (1174)
38 PF09158 MotCF: Bacteriophage 33.0 19 0.00042 29.9 0.7 53 5-74 19-72 (103)
39 PF14193 DUF4315: Domain of un 32.7 2.3E+02 0.005 22.6 6.8 21 115-135 4-24 (83)
40 PF12252 SidE: Dot/Icm substra 32.4 2.7E+02 0.0059 32.4 9.5 61 114-181 1133-1193(1439)
41 COG1422 Predicted membrane pro 31.1 2.2E+02 0.0048 26.5 7.4 22 113-134 73-94 (201)
42 COG0139 HisI Phosphoribosyl-AM 30.4 29 0.00062 29.3 1.3 50 15-64 48-106 (111)
43 PRK11637 AmiB activator; Provi 30.3 2.4E+02 0.0052 28.8 8.4 21 149-169 104-124 (428)
44 COG2433 Uncharacterized conser 29.6 3.6E+02 0.0078 29.4 9.5 22 114-135 445-466 (652)
45 KOG0994 Extracellular matrix g 29.6 3.7E+02 0.0081 31.7 10.0 61 112-172 1225-1291(1758)
46 PRK09841 cryptic autophosphory 28.1 6.2E+02 0.013 27.9 11.6 35 65-99 247-281 (726)
47 PRK01770 sec-independent trans 27.6 1E+02 0.0022 28.0 4.5 36 34-75 8-43 (171)
48 PF15188 CCDC-167: Coiled-coil 27.3 3.3E+02 0.0072 21.9 7.2 50 113-167 6-55 (85)
49 PF10211 Ax_dynein_light: Axon 27.3 4.8E+02 0.01 23.8 12.1 19 116-134 124-142 (189)
50 PF01502 PRA-CH: Phosphoribosy 26.7 19 0.0004 28.3 -0.3 38 16-53 17-63 (75)
51 PF13514 AAA_27: AAA domain 26.5 7E+02 0.015 29.0 12.1 21 147-167 241-261 (1111)
52 KOG1853 LIS1-interacting prote 26.3 6.2E+02 0.013 24.7 10.7 23 149-171 88-110 (333)
53 PF11336 DUF3138: Protein of u 25.9 3.2E+02 0.0069 28.6 8.0 59 110-168 23-103 (514)
54 PF11291 DUF3091: Protein of u 25.9 3.9E+02 0.0084 22.2 8.0 51 113-163 19-70 (100)
55 KOG4672 Uncharacterized conser 25.3 3.9E+02 0.0085 27.7 8.5 29 144-172 66-94 (487)
56 COG2433 Uncharacterized conser 25.3 3.8E+02 0.0082 29.2 8.8 17 114-130 431-447 (652)
57 PF06698 DUF1192: Protein of u 25.2 1.8E+02 0.0038 21.8 4.6 29 139-167 14-43 (59)
58 PF08172 CASP_C: CASP C termin 24.9 1.7E+02 0.0036 28.1 5.7 26 113-138 108-133 (248)
59 PF08317 Spc7: Spc7 kinetochor 24.9 6.7E+02 0.015 24.7 11.3 7 174-180 258-264 (325)
60 PF08317 Spc7: Spc7 kinetochor 24.0 7E+02 0.015 24.5 10.5 31 142-172 203-233 (325)
61 PF04645 DUF603: Protein of un 23.9 5.6E+02 0.012 23.4 8.8 67 110-179 103-169 (181)
62 COG1730 GIM5 Predicted prefold 23.4 3.9E+02 0.0084 23.6 7.3 23 112-134 6-28 (145)
63 PF09006 Surfac_D-trimer: Lung 23.1 1.2E+02 0.0026 21.7 3.2 18 117-134 4-21 (46)
64 PF07888 CALCOCO1: Calcium bin 22.5 9.9E+02 0.021 25.7 12.1 29 31-60 78-113 (546)
65 TIGR01478 STEVOR variant surfa 21.9 1.3E+02 0.0028 29.6 4.3 45 7-73 25-69 (295)
66 PF12537 DUF3735: Protein of u 21.7 1.5E+02 0.0032 22.7 3.8 25 147-171 47-71 (72)
67 PF14282 FlxA: FlxA-like prote 21.4 4.6E+02 0.01 21.5 8.4 51 113-171 20-70 (106)
68 PRK11519 tyrosine kinase; Prov 20.6 1E+03 0.022 26.1 11.5 35 64-98 246-280 (719)
69 PRK00182 tatB sec-independent 20.4 78 0.0017 28.5 2.3 35 34-74 9-43 (160)
70 KOG0243 Kinesin-like protein [ 20.0 2.3E+02 0.005 32.7 6.3 59 114-172 406-472 (1041)
71 cd08888 SRPBCC_PITPNA-B_like L 20.0 1.8E+02 0.004 28.1 4.9 39 128-166 220-258 (258)
72 PRK10722 hypothetical protein; 20.0 4.1E+02 0.0088 25.6 7.1 10 66-75 127-136 (247)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=4.5e-35 Score=266.38 Aligned_cols=171 Identities=29% Similarity=0.462 Sum_probs=121.0
Q ss_pred CCCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhccCHHHHH
Q 017948 1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTPQERA 80 (363)
Q Consensus 1 MGR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~s~~er~ 80 (363)
|||+||+|+||||.++|||||+|||+||||||+|||||||||||||||||+||+|+||+++.+|.+|++||...+..++.
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999987444499999999998876655
Q ss_pred HHhHHHHHHHHHH-HhhhhhchhhHHHhccchhhHHHHHHHHHHHHHHHHHHH---HhhhcCCCCC-CCCCH-HHHHHHH
Q 017948 81 KRKLESLEALKKT-FKKLDHDVNIQDFLGASTQTVEELTHQVRILQAQLTEVH---QRLSYWSNPG-NIESI-EHLRQME 154 (363)
Q Consensus 81 k~~~e~~e~L~k~-~kKL~~d~~i~~~l~~~s~~vE~L~~Ei~kLk~qle~lq---~rlr~~~g~d-~~LSl-kELq~LE 154 (363)
+........+... +.++..+...... ....+..+...++...+.+. ...+.+.+++ ..++. .+|..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~ 154 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEEL------KLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLE 154 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhc------cchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchh
Confidence 4432222222111 1111100000000 00112223333443333333 2345566666 66777 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHh
Q 017948 155 NSLRESINQICLHKENFGKQQLM 177 (363)
Q Consensus 155 ~qLe~sL~~IR~RK~qL~~eql~ 177 (363)
.+|+.++..+|.++...+.+++.
T Consensus 155 ~~l~~~~~~~~~~~~~~~~~~~~ 177 (195)
T KOG0014|consen 155 SQLESSLHNSRSSKSKPLSDSNF 177 (195)
T ss_pred hHHHHhhcCCCCCCCcCCcchhh
Confidence 99999999999999887777664
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=1.6e-30 Score=204.45 Aligned_cols=73 Identities=49% Similarity=0.889 Sum_probs=70.5
Q ss_pred CCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhccCH
Q 017948 2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTP 76 (363)
Q Consensus 2 GR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~s~ 76 (363)
||+||+|++|||+..|+|||+|||.||||||+||||||||+||||||||+|+++.|++ +++++||+||.+.+.
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s--~s~~~vl~ry~~~~~ 73 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSS--PSMEKIIERYQKTSG 73 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecC--CCHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999999999999999999987 789999999998764
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.94 E-value=1.9e-28 Score=195.25 Aligned_cols=79 Identities=48% Similarity=0.833 Sum_probs=73.0
Q ss_pred CCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhccCHHHHHH
Q 017948 2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTPQERAK 81 (363)
Q Consensus 2 GR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~s~~er~k 81 (363)
||+||+|++|+|..+|+|||+|||.||+|||+||||||||+||||||||+|+++.|+++ +++..||+||...+..++.+
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~ 79 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPS-SEVEGVISRFEVLSALERKK 79 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCc-HHHHHHHHHHhhcCHhhhhc
Confidence 89999999999999999999999999999999999999999999999999999999873 23999999999988765543
No 4
>smart00432 MADS MADS domain.
Probab=99.93 E-value=4.5e-27 Score=175.34 Aligned_cols=58 Identities=59% Similarity=0.999 Sum_probs=56.9
Q ss_pred CCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccC
Q 017948 2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHG 59 (363)
Q Consensus 2 GR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s 59 (363)
||+||+|++|+|...|++||+|||.||+|||+||||||||+||||||||+|+++.|++
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~ 58 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS 58 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccC
Confidence 8999999999999999999999999999999999999999999999999999999985
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.92 E-value=1.6e-26 Score=172.37 Aligned_cols=58 Identities=53% Similarity=0.952 Sum_probs=56.9
Q ss_pred CCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccC
Q 017948 2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHG 59 (363)
Q Consensus 2 GR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s 59 (363)
||+||+|++|+|...|+|||+|||.||+|||+||||||||+||||||||+|+++.|++
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~ 58 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS 58 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence 8999999999999999999999999999999999999999999999999999999985
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.88 E-value=4.7e-25 Score=159.55 Aligned_cols=51 Identities=51% Similarity=0.914 Sum_probs=46.7
Q ss_pred EEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccC
Q 017948 9 KRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHG 59 (363)
Q Consensus 9 krIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s 59 (363)
|+|||...|++||+|||.||+|||.|||+||||+||||||||+|+++.|++
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999999974
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.73 E-value=4.9e-19 Score=167.48 Aligned_cols=66 Identities=44% Similarity=0.657 Sum_probs=62.4
Q ss_pred CCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHH
Q 017948 2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIA 69 (363)
Q Consensus 2 GR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILe 69 (363)
||+||+|++|||+..|.|||||||.||||||+|||||+|.+|-|+|-|.+|-+|.|++ +-++.||.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaT--pKLep~i~ 128 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--PKLEPMIT 128 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecc--cccccccc
Confidence 7999999999999999999999999999999999999999999999999999999997 66666664
No 8
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.34 E-value=2.3e-13 Score=134.49 Aligned_cols=65 Identities=37% Similarity=0.558 Sum_probs=60.9
Q ss_pred CCCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHH
Q 017948 1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEV 67 (363)
Q Consensus 1 MGR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~I 67 (363)
|||+||.|..|+|+..|.|||+||+.||+|||+||+||.+.+|+|+|.|.+|+++.|+. +..+.|
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~t--p~~e~v 145 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTT--PKLESV 145 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecC--Cccccc
Confidence 79999999999999999999999999999999999999999999999999999999987 544444
No 9
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.31 E-value=5.1e-12 Score=104.04 Aligned_cols=81 Identities=17% Similarity=0.239 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcc--cCCC
Q 017948 112 QTVEELTHQVRILQAQLTEVHQRLSYWSNPG-NIESIEHLRQMENSLRESINQICLHKENFGKQQLMSLEFAGQ--SGMH 188 (363)
Q Consensus 112 ~~vE~L~~Ei~kLk~qle~lq~rlr~~~g~d-~~LSlkELq~LE~qLe~sL~~IR~RK~qL~~eql~~Lq~keq--~~~n 188 (363)
...+.+..++.+|+.+++.++..+|++.|++ +.||++||..||++|+.+|++||+||.+++.++|..|++|+. .+.|
T Consensus 12 ~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en 91 (100)
T PF01486_consen 12 SQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEEN 91 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999 899999999999999999999999999999999999999976 4555
Q ss_pred chhh
Q 017948 189 LPLM 192 (363)
Q Consensus 189 ~~l~ 192 (363)
..|+
T Consensus 92 ~~L~ 95 (100)
T PF01486_consen 92 NQLR 95 (100)
T ss_pred HHHH
Confidence 5443
No 10
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=88.22 E-value=4.7 Score=35.93 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=51.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017948 110 STQTVEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKE 169 (363)
Q Consensus 110 ~s~~vE~L~~Ei~kLk~qle~lq~rlr~~~g~d~~LSlkELq~LE~qLe~sL~~IR~RK~ 169 (363)
...+.++|...+..|+.+++.++.++..+.+.....|.+|...+++......+..+.||.
T Consensus 107 ~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 107 SEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999999999999999888776655668999999999999999999999984
No 11
>PRK04098 sec-independent translocase; Provisional
Probab=82.39 E-value=3.6 Score=36.77 Aligned_cols=82 Identities=10% Similarity=0.245 Sum_probs=48.8
Q ss_pred ceeecccCCCCCCccccCCCCchHHHHHHHhccCHHHHHHHhHHHHHHHHHHHhhhhhchhhHHHhccchhhHHHHHHHH
Q 017948 42 DIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQDFLGASTQTVEELTHQV 121 (363)
Q Consensus 42 eVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~s~~er~k~~~e~~e~L~k~~kKL~~d~~i~~~l~~~s~~vE~L~~Ei 121 (363)
=||||||.| .||.... ..+-+.+.+|++.....+. .+. .+. .+.+|+.+.
T Consensus 14 vVaLlvfGP-~KLP~~~---r~lGk~ir~~K~~~~~~k~--------~l~-------~Ei-----------~~~elk~e~ 63 (158)
T PRK04098 14 VVAIIFLGP-DKLPQAM---VDIAKFFKAVKKTINDAKS--------TLD-------KEI-----------NIEEIKEEA 63 (158)
T ss_pred HHHHhhcCc-hHHHHHH---HHHHHHHHHHHHHHHHHHH--------HHH-------HHH-----------hhHHHHHHH
Confidence 379999998 5877765 4677777777664332111 111 111 245667777
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 017948 122 RILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRE 159 (363)
Q Consensus 122 ~kLk~qle~lq~rlr~~~g~d~~LSlkELq~LE~qLe~ 159 (363)
.+.+..++.....+|- .+++++|..+-.-+..
T Consensus 64 ~k~k~~l~~~~~~l~~------~~~~eel~~~~~~~~~ 95 (158)
T PRK04098 64 LKYKKEFESAVESLKK------KLKFEELDDLKITAEN 95 (158)
T ss_pred HHHHHHHHHHHHHHHh------ccChHHHHHHhhhhhh
Confidence 7777777776666652 2677777766433333
No 12
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=81.25 E-value=0.58 Score=28.46 Aligned_cols=14 Identities=43% Similarity=0.619 Sum_probs=11.5
Q ss_pred ceeecccCCCCCCc
Q 017948 42 DIVLLMFSPTGRST 55 (363)
Q Consensus 42 eVALIIFSp~GKl~ 55 (363)
|-.+.+|||.||++
T Consensus 2 D~~~t~FSp~Grl~ 15 (23)
T PF10584_consen 2 DRSITTFSPDGRLF 15 (23)
T ss_dssp SSSTTSBBTTSSBH
T ss_pred CCCceeECCCCeEE
Confidence 34678999999997
No 13
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=79.33 E-value=45 Score=30.37 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=54.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 017948 110 STQTVEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLM 177 (363)
Q Consensus 110 ~s~~vE~L~~Ei~kLk~qle~lq~rlr~~~g~d~~LSlkELq~LE~qLe~sL~~IR~RK~qL~~eql~ 177 (363)
+..++++++.++..|+.......+++..+.......+.+|-.+.++.-+...+.-|.||. ++.+=++
T Consensus 114 s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~kr-mf~ei~d 180 (201)
T KOG4603|consen 114 SALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKR-MFREIID 180 (201)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 456889999999999999999999988776555557889999999999999999999887 4444344
No 14
>PHA03155 hypothetical protein; Provisional
Probab=74.29 E-value=24 Score=29.92 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017948 112 QTVEELTHQVRILQAQLTEVHQRLSYWSNPG-NIESIEHLRQMENSLRESINQICLHK 168 (363)
Q Consensus 112 ~~vE~L~~Ei~kLk~qle~lq~rlr~~~g~d-~~LSlkELq~LE~qLe~sL~~IR~RK 168 (363)
.++|+|..++.+|+-++..|.+.++...+++ ..|+-.+=+.+--+.-..|...-++|
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~K 65 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEK 65 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999997765555 77888887777777666666555544
No 15
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=66.27 E-value=40 Score=30.32 Aligned_cols=46 Identities=15% Similarity=0.361 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017948 114 VEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHK 168 (363)
Q Consensus 114 vE~L~~Ei~kLk~qle~lq~rlr~~~g~d~~LSlkELq~LE~qLe~sL~~IR~RK 168 (363)
+++.++++.+|+.++..|... +.+.+++..+-+.+++.|+.||+--
T Consensus 113 L~e~snki~kLe~~~k~L~d~---------Iv~~~~i~e~IKd~de~L~~I~d~i 158 (163)
T PF03233_consen 113 LEEISNKIRKLETEVKKLKDN---------IVTEKLIEELIKDFDERLKEIRDKI 158 (163)
T ss_pred HHHHHHHHHHHHHHHHhHhhh---------ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555544444333 4567888999999999999998753
No 16
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=65.80 E-value=40 Score=28.74 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCC----CC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017948 113 TVEELTHQVRILQAQLTEVHQRLSYWSN----PG-NIESIEHLRQMENSLRESINQICLHK 168 (363)
Q Consensus 113 ~vE~L~~Ei~kLk~qle~lq~rlr~~~g----~d-~~LSlkELq~LE~qLe~sL~~IR~RK 168 (363)
++|+|..++.+|+-++..|.+.++...| ++ ..|+-.+=+.|--+.-.+|...-++|
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~K 64 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKK 64 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999988775 33 78898887777777666666655555
No 17
>PRK04654 sec-independent translocase; Provisional
Probab=58.84 E-value=20 Score=33.59 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=17.5
Q ss_pred eeecccCCCCCCccccCCCCchHHHHHHHhc
Q 017948 43 IVLLMFSPTGRSTLFHGQRSNIEEVIARFAQ 73 (363)
Q Consensus 43 VALIIFSp~GKl~~f~s~~ssme~ILeRY~~ 73 (363)
||||||.| .||-... ..+-+.|.++++
T Consensus 15 VALlV~GP-erLPe~a---RtlGk~irk~R~ 41 (214)
T PRK04654 15 VALVVLGP-ERLPKAA---RFAGLWVRRARM 41 (214)
T ss_pred HHHHhcCc-hHHHHHH---HHHHHHHHHHHH
Confidence 78999998 5665554 355556655553
No 18
>PHA03162 hypothetical protein; Provisional
Probab=57.11 E-value=77 Score=27.56 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCC-C----CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017948 112 QTVEELTHQVRILQAQLTEVHQRLSYWSN-P----GNIESIEHLRQMENSLRESINQICLHK 168 (363)
Q Consensus 112 ~~vE~L~~Ei~kLk~qle~lq~rlr~~~g-~----d~~LSlkELq~LE~qLe~sL~~IR~RK 168 (363)
.++|+|..|+.+|+-++..|.+.++.-.+ + |.+|+-.+=+.|--+.-..|...-++|
T Consensus 13 ~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kK 74 (135)
T PHA03162 13 PTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKK 74 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999876533 3 356888887777766666666655555
No 19
>PRK01919 tatB sec-independent translocase; Provisional
Probab=56.09 E-value=33 Score=31.02 Aligned_cols=27 Identities=15% Similarity=0.301 Sum_probs=16.1
Q ss_pred eeecccCCCCCCccccCCCCchHHHHHHHhc
Q 017948 43 IVLLMFSPTGRSTLFHGQRSNIEEVIARFAQ 73 (363)
Q Consensus 43 VALIIFSp~GKl~~f~s~~ssme~ILeRY~~ 73 (363)
||||||.| .||.... ..+-..+.++++
T Consensus 15 VALiV~GP-ekLP~~a---RtlGk~i~k~Rr 41 (169)
T PRK01919 15 VALVVIGP-ERLPRVA---RTAGALFGRAQR 41 (169)
T ss_pred HHHheeCc-hHhHHHH---HHHHHHHHHHHH
Confidence 78899988 5655543 244444444443
No 20
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=55.29 E-value=37 Score=30.85 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 017948 148 EHLRQMENSLRESINQICL 166 (363)
Q Consensus 148 kELq~LE~qLe~sL~~IR~ 166 (363)
.||+.||.||++.+..||+
T Consensus 159 qElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 159 QELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 5899999999999998875
No 21
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.01 E-value=80 Score=30.68 Aligned_cols=30 Identities=13% Similarity=0.259 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 017948 147 IEHLRQMENSLRESINQICLHKENFGKQQLM 177 (363)
Q Consensus 147 lkELq~LE~qLe~sL~~IR~RK~qL~~eql~ 177 (363)
=.++..|+..++..-.+|++|++-| .+++-
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~~l-~~raR 108 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQELL-KKRAR 108 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4577888899999999999997543 44443
No 22
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=53.17 E-value=2.5e+02 Score=29.31 Aligned_cols=29 Identities=17% Similarity=0.481 Sum_probs=24.2
Q ss_pred ceeecccCCCCCCccccCCCCchHHHHHHHhcc
Q 017948 42 DIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQL 74 (363)
Q Consensus 42 eVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~ 74 (363)
-+-+++|.++|++..|. ++.+||..|-.+
T Consensus 298 ~~Nm~~~d~~g~~~~~~----~~~~Il~~f~~~ 326 (439)
T PHA02592 298 SQNITVINENGKLKVYE----NAEDLIRDFVEI 326 (439)
T ss_pred eeeEEEEecCCeeeecC----CHHHHHHHHHHH
Confidence 47788999999998883 689999999754
No 23
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=47.77 E-value=93 Score=24.54 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 017948 115 EELTHQVRILQAQLTEVHQRLSYWSNPG 142 (363)
Q Consensus 115 E~L~~Ei~kLk~qle~lq~rlr~~~g~d 142 (363)
.++......|+.++......++-+.|.+
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpgi~ 51 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPGID 51 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3455556666666666666666566655
No 24
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=45.94 E-value=1.7e+02 Score=27.77 Aligned_cols=56 Identities=13% Similarity=0.236 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017948 113 TVEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHK 168 (363)
Q Consensus 113 ~vE~L~~Ei~kLk~qle~lq~rlr~~~g~d~~LSlkELq~LE~qLe~sL~~IR~RK 168 (363)
..+.|...+..+...+.++-.....+...+..++-.+|..+=...+.-|..||.|-
T Consensus 88 ~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~ 143 (264)
T PF06008_consen 88 RAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD 143 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677777888888887777776665554566888899988888888899999884
No 25
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=44.92 E-value=1.1e+02 Score=27.36 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017948 114 VEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENF 171 (363)
Q Consensus 114 vE~L~~Ei~kLk~qle~lq~rlr~~~g~d~~LSlkELq~LE~qLe~sL~~IR~RK~qL 171 (363)
++.++-....++.++..++.+++......++|.+-|..+|.-.-.....+|.+|-..|
T Consensus 8 i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL 65 (177)
T PF13870_consen 8 ISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKEL 65 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666655544455777777777666566666666665544
No 26
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=43.48 E-value=2.2e+02 Score=24.62 Aligned_cols=50 Identities=28% Similarity=0.429 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017948 114 VEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENF 171 (363)
Q Consensus 114 vE~L~~Ei~kLk~qle~lq~rlr~~~g~d~~LSlkELq~LE~qLe~sL~~IR~RK~qL 171 (363)
++.+...+.+|+.+++.+++.+. ..-.....++..+......++.-|+++
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~--------~~~~~~~~l~~~~~~~~~~~k~~kee~ 117 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELA--------SAEEKERQLQKQLKSLEAKLKQEKEEL 117 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666665543 122344455555555555555554443
No 27
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=42.36 E-value=1.4e+02 Score=28.81 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017948 116 ELTHQVRILQAQLTEVHQRLS--YWSNPGNIESIEHLRQMENSLRESINQICLHKEN 170 (363)
Q Consensus 116 ~L~~Ei~kLk~qle~lq~rlr--~~~g~d~~LSlkELq~LE~qLe~sL~~IR~RK~q 170 (363)
+++-.++.|..++..++-.+| .|....---+.+|-..|-.+|...|..++.++.+
T Consensus 13 d~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~E 69 (277)
T PF15030_consen 13 DLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHE 69 (277)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444445555555555544443 0000000023444444444555444444444443
No 28
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.94 E-value=2.1e+02 Score=25.19 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017948 145 ESIEHLRQMENSLRESINQICLHKENF 171 (363)
Q Consensus 145 LSlkELq~LE~qLe~sL~~IR~RK~qL 171 (363)
++.+||...-.+|+.-+..+.+|-..|
T Consensus 109 ~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 109 PTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888877777777777666664444
No 29
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=41.17 E-value=2.6e+02 Score=31.09 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHH----HHHHHHHHHHHH---HHHHHHHH
Q 017948 113 TVEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQ----MENSLRESINQI---CLHKENFG 172 (363)
Q Consensus 113 ~vE~L~~Ei~kLk~qle~lq~rlr~~~g~d~~LSlkELq~----LE~qLe~sL~~I---R~RK~qL~ 172 (363)
..|.++.+|++|.++++.+..+ ++|+.. .|+||+++|..+ |+.|..|-
T Consensus 122 efE~~Khei~rl~Ee~~~l~~q------------lee~~rLk~iae~qleEALesl~~EReqk~~Lr 176 (717)
T PF09730_consen 122 EFEGLKHEIKRLEEEIELLNSQ------------LEEAARLKEIAEKQLEEALESLKSEREQKNALR 176 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666555444 233333 278888887666 55555553
No 30
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=39.68 E-value=2.2e+02 Score=30.24 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=29.8
Q ss_pred ceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhccC
Q 017948 6 LKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLT 75 (363)
Q Consensus 6 i~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~s 75 (363)
+-|+|.-+...|...|---+.==.+.-.+|. ...|.|.+.......+.. ..--.+|++|....
T Consensus 95 ~ii~R~i~~~grs~~~iNg~~v~~~~l~~l~-----~~li~i~gQ~~~~~l~~~--~~~~~lLD~~~~~~ 157 (563)
T TIGR00634 95 VILRRSISRDGRSRAYLNGKPVSASSLLEFT-----SELLDLHGQHDQQLLFRP--DEQRQLLDTFAGAN 157 (563)
T ss_pred EEEEEEEcCCCceEEEECCEEccHHHHHHHh-----cCeEEEECchHHHHhcCH--HHHHHHHHHhcCch
Confidence 4455555555555544332222223333432 122333333334444432 56678889888753
No 31
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=39.36 E-value=88 Score=28.57 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=42.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017948 110 STQTVEELTHQVRILQAQLTEVHQRLSYWSNPG----NIESIEHLRQMENSLRESINQICLHKEN 170 (363)
Q Consensus 110 ~s~~vE~L~~Ei~kLk~qle~lq~rlr~~~g~d----~~LSlkELq~LE~qLe~sL~~IR~RK~q 170 (363)
++..+..|..++.+|.+++..+++..++...+. ..|+++|++.--+.|..-.+--|+|-..
T Consensus 77 ~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 77 SDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667788888888888888877665444 4578899888877777766666655443
No 32
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=38.15 E-value=2.5e+02 Score=30.17 Aligned_cols=31 Identities=6% Similarity=0.048 Sum_probs=17.1
Q ss_pred ccchhhhhhhhh--cccCcceeecccCCCCCCcc
Q 017948 25 RNGILKKARELS--ILCDIDIVLLMFSPTGRSTL 56 (363)
Q Consensus 25 R~GL~KKA~ELS--vLCDaeVALIIFSp~GKl~~ 56 (363)
-.-|++++-++. +|-++.|.+.... .|+.++
T Consensus 88 l~pLL~~~vvI~~l~l~g~~v~l~R~~-~G~~~~ 120 (555)
T TIGR03545 88 WDALLRGKVVIEELAIEGLAFGTERST-SGAVPE 120 (555)
T ss_pred cHHHhcCCcEEeEEEEecCEEEEEEcc-CCCCCC
Confidence 334666665554 3346666666555 466554
No 33
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=36.40 E-value=3.9e+02 Score=25.56 Aligned_cols=53 Identities=19% Similarity=0.342 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCC-CCCCCCHHHHHHHHHHHHHHHHHHHH
Q 017948 114 VEELTHQVRILQAQLTEVHQRLSYWSN-PGNIESIEHLRQMENSLRESINQICL 166 (363)
Q Consensus 114 vE~L~~Ei~kLk~qle~lq~rlr~~~g-~d~~LSlkELq~LE~qLe~sL~~IR~ 166 (363)
++++..++..++..+.++..++.-... .....+.+++..|...+..+-.++++
T Consensus 54 ~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~ 107 (239)
T COG1579 54 LEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINS 107 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444433321000 01234566666666555544444433
No 34
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=34.83 E-value=5.6e+02 Score=26.92 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 017948 148 EHLRQMENSLRESINQ 163 (363)
Q Consensus 148 kELq~LE~qLe~sL~~ 163 (363)
..|..+|.++.+.+..
T Consensus 417 ~kl~~~~e~~~~~~~s 432 (493)
T KOG0804|consen 417 GKLKELEEREKEALGS 432 (493)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 35
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=34.11 E-value=2.3e+02 Score=22.23 Aligned_cols=53 Identities=11% Similarity=0.183 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017948 116 ELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENF 171 (363)
Q Consensus 116 ~L~~Ei~kLk~qle~lq~rlr~~~g~d~~LSlkELq~LE~qLe~sL~~IR~RK~qL 171 (363)
.|+.|+..++-+..+++..++. .+..++...-..|+..|+..++++-.+-+|+
T Consensus 21 ~LqDE~~hm~~e~~~L~~~~~~---~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI 73 (79)
T PF06657_consen 21 ALQDEFGHMKMEHQELQDEYKQ---MDPSLGRRKRRDLEQELEELVKRMEAKADQI 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---cccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554433 2334678888899999999999987765443
No 36
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=33.96 E-value=2e+02 Score=24.02 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017948 115 EELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENF 171 (363)
Q Consensus 115 E~L~~Ei~kLk~qle~lq~rlr~~~g~d~~LSlkELq~LE~qLe~sL~~IR~RK~qL 171 (363)
+++..+++.|-..++++- +.| ...+-+|+..|-..++..|+++|.|-...
T Consensus 11 ~~l~~el~~L~d~lEevL---~ss----g~~a~~e~~~lR~r~~~~Lk~~r~rl~~~ 60 (104)
T COG4575 11 DQLLAELQELLDTLEEVL---KSS----GSLAGDEAEELRSKAESALKEARDRLGDT 60 (104)
T ss_pred HHHHHHHHHHHHHHHHHH---Hhc----ccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666666555542 222 23567899999999999999988875544
No 37
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.79 E-value=6.2e+02 Score=29.40 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=13.7
Q ss_pred ccCCCCCCccccCCCCchHHHHHHHhcc
Q 017948 47 MFSPTGRSTLFHGQRSNIEEVIARFAQL 74 (363)
Q Consensus 47 IFSp~GKl~~f~s~~ssme~ILeRY~~~ 74 (363)
||.|.|-|+==+ ++.-.++|..++.+
T Consensus 654 V~dP~GtlTGGs--~~~~a~~L~~l~~l 679 (1174)
T KOG0933|consen 654 VYDPSGTLTGGS--RSKGADLLRQLQKL 679 (1174)
T ss_pred eeCCCCcccCCC--CCCcccHHHHHHHH
Confidence 688888876322 22222355555544
No 38
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=32.97 E-value=19 Score=29.91 Aligned_cols=53 Identities=30% Similarity=0.543 Sum_probs=35.8
Q ss_pred cceeEEe-cCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhcc
Q 017948 5 KLKIKRL-ESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQL 74 (363)
Q Consensus 5 Ki~IkrI-en~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~ 74 (363)
++++|.+ ++.+|=.|+|.||-.|+-+ .|| ..+|..=.|+. .-.++++..|..+
T Consensus 19 ~ie~K~~~~~RSN~~i~f~KRt~Girq----------fEi-----~n~G~~RI~gY--k~se~~~~~f~sl 72 (103)
T PF09158_consen 19 KIEVKEIVIDRSNYEIRFKKRTKGIRQ----------FEI-----RNKGEFRIFGY--KMSEEIIKKFTSL 72 (103)
T ss_dssp T--EEEEEEETTEEEEEEEEEETTEEE----------EEE-----ETTSEEEEEEE--S--HHHHHHHHHT
T ss_pred ceeeeeeEeeccceEEeeecccCceeE----------EEE-----ecCCcEEEEEE--cCCHHHHHHHHhc
Confidence 5788887 8999999999999999842 222 25677666664 4567777777654
No 39
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=32.69 E-value=2.3e+02 Score=22.62 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 017948 115 EELTHQVRILQAQLTEVHQRL 135 (363)
Q Consensus 115 E~L~~Ei~kLk~qle~lq~rl 135 (363)
+.+..+|.+.+.++.++|.++
T Consensus 4 eKi~~eieK~k~Kiae~Q~rl 24 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARL 24 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666653
No 40
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=32.42 E-value=2.7e+02 Score=32.35 Aligned_cols=61 Identities=13% Similarity=0.218 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 017948 114 VEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMSLEF 181 (363)
Q Consensus 114 vE~L~~Ei~kLk~qle~lq~rlr~~~g~d~~LSlkELq~LE~qLe~sL~~IR~RK~qL~~eql~~Lq~ 181 (363)
++.|++|++.|+.+ +.|+..|-++ ....+++.||++|...-..+-.-=---...||+.|+.
T Consensus 1133 lnnlqqElklLRnE------K~Rmh~~~dk-VDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~ 1193 (1439)
T PF12252_consen 1133 LNNLQQELKLLRNE------KIRMHSGTDK-VDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEK 1193 (1439)
T ss_pred HHHHHHHHHHHHhH------HHhhccCCCc-ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 34556666655542 4556666665 7889999999998877554422111111236666664
No 41
>COG1422 Predicted membrane protein [Function unknown]
Probab=31.08 E-value=2.2e+02 Score=26.52 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 017948 113 TVEELTHQVRILQAQLTEVHQR 134 (363)
Q Consensus 113 ~vE~L~~Ei~kLk~qle~lq~r 134 (363)
++++++++.+.+|++.++.+++
T Consensus 73 km~~~qk~m~efq~e~~eA~~~ 94 (201)
T COG1422 73 KMKELQKMMKEFQKEFREAQES 94 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666665554
No 42
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=30.44 E-value=29 Score=29.30 Aligned_cols=50 Identities=28% Similarity=0.463 Sum_probs=35.2
Q ss_pred CCcceeecccccchhhhh---------hhhhcccCcceeecccCCCCCCccccCCCCch
Q 017948 15 SNRQVTYSKRRNGILKKA---------RELSILCDIDIVLLMFSPTGRSTLFHGQRSNI 64 (363)
Q Consensus 15 ~~RqvTFsKRR~GL~KKA---------~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssm 64 (363)
+.+-.-||+=|+-|.+|- .|+.+=||.|.-||+..+.|.+.---+.++++
T Consensus 48 Tg~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg~aCHtG~~SCF 106 (111)
T COG0139 48 TGEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGGPACHTGTRSCF 106 (111)
T ss_pred cCeEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCCCcccCCCcccc
Confidence 344455677777677765 49999999999999999977655333333443
No 43
>PRK11637 AmiB activator; Provisional
Probab=30.30 E-value=2.4e+02 Score=28.80 Aligned_cols=21 Identities=10% Similarity=0.211 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 017948 149 HLRQMENSLRESINQICLHKE 169 (363)
Q Consensus 149 ELq~LE~qLe~sL~~IR~RK~ 169 (363)
++..++.+|...-.+|..++.
T Consensus 104 ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 104 QIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 44
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=29.61 E-value=3.6e+02 Score=29.38 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 017948 114 VEELTHQVRILQAQLTEVHQRL 135 (363)
Q Consensus 114 vE~L~~Ei~kLk~qle~lq~rl 135 (363)
+++++.++.+|+.+++.+.++.
T Consensus 445 ~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 445 LEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555444443
No 45
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=29.59 E-value=3.7e+02 Score=31.72 Aligned_cols=61 Identities=11% Similarity=0.128 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCC----CCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017948 112 QTVEELTHQVRILQAQLTEVHQRLSYWS----NPG--NIESIEHLRQMENSLRESINQICLHKENFG 172 (363)
Q Consensus 112 ~~vE~L~~Ei~kLk~qle~lq~rlr~~~----g~d--~~LSlkELq~LE~qLe~sL~~IR~RK~qL~ 172 (363)
..+++|......|+.+|..+..+|.... +.. ..++-+||..|++..+..++-+++.++++.
T Consensus 1225 ~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~ 1291 (1758)
T KOG0994|consen 1225 EDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLE 1291 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666655555443221 111 134568999999988888888888777753
No 46
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=28.14 E-value=6.2e+02 Score=27.89 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=16.6
Q ss_pred HHHHHHHhccCHHHHHHHhHHHHHHHHHHHhhhhh
Q 017948 65 EEVIARFAQLTPQERAKRKLESLEALKKTFKKLDH 99 (363)
Q Consensus 65 e~ILeRY~~~s~~er~k~~~e~~e~L~k~~kKL~~ 99 (363)
..+++.|....-..+........++|.+++.+++.
T Consensus 247 N~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~ 281 (726)
T PRK09841 247 NSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRS 281 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666554443333333344555555554433
No 47
>PRK01770 sec-independent translocase; Provisional
Probab=27.65 E-value=1e+02 Score=28.04 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=21.8
Q ss_pred hhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhccC
Q 017948 34 ELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLT 75 (363)
Q Consensus 34 ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~s 75 (363)
||-|++ =||||||.| .||.... ..+-..|.++++..
T Consensus 8 ELllI~--vVaLlV~GP-erLP~~~---r~lg~~i~~~R~~~ 43 (171)
T PRK01770 8 ELLLVF--VIGLVVLGP-QRLPVAV---KTVAGWIRALRSLA 43 (171)
T ss_pred HHHHHH--HHHHHhcCc-hHHHHHH---HHHHHHHHHHHHHH
Confidence 444443 278999998 5665553 35666666665543
No 48
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=27.31 E-value=3.3e+02 Score=21.90 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017948 113 TVEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLH 167 (363)
Q Consensus 113 ~vE~L~~Ei~kLk~qle~lq~rlr~~~g~d~~LSlkELq~LE~qLe~sL~~IR~R 167 (363)
.|+.+...+...+.+++.+..+++- ..+|.++-..||+.+..-.+++..-
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~-----~eLs~e~R~~lE~E~~~l~~~l~~~ 55 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRR-----RELSPEARRSLEKELNELKEKLENN 55 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcc-----cCCChHHHHHHHHHHHHHHHHhhcc
Confidence 3555666777788888888888763 2378888888887777666665544
No 49
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=27.29 E-value=4.8e+02 Score=23.76 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 017948 116 ELTHQVRILQAQLTEVHQR 134 (363)
Q Consensus 116 ~L~~Ei~kLk~qle~lq~r 134 (363)
++..++..|+.+++.++..
T Consensus 124 ~l~~~i~~L~~e~~~L~~~ 142 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQ 142 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555544444433
No 50
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=26.71 E-value=19 Score=28.33 Aligned_cols=38 Identities=32% Similarity=0.568 Sum_probs=29.4
Q ss_pred Ccceeecccccchhhhhh---------hhhcccCcceeecccCCCCC
Q 017948 16 NRQVTYSKRRNGILKKAR---------ELSILCDIDIVLLMFSPTGR 53 (363)
Q Consensus 16 ~RqvTFsKRR~GL~KKA~---------ELSvLCDaeVALIIFSp~GK 53 (363)
.+-+-||+-|++|..|.. |+.+=||.|.-|+..-|.|-
T Consensus 17 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 17 GRATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp SB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred CcEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 444556888989988764 89999999999999988886
No 51
>PF13514 AAA_27: AAA domain
Probab=26.53 E-value=7e+02 Score=28.97 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 017948 147 IEHLRQMENSLRESINQICLH 167 (363)
Q Consensus 147 lkELq~LE~qLe~sL~~IR~R 167 (363)
...+..++..+...-.++...
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~ 261 (1111)
T PF13514_consen 241 AERLEQLEEELAEAQAQLERL 261 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544444444333
No 52
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=26.31 E-value=6.2e+02 Score=24.70 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017948 149 HLRQMENSLRESINQICLHKENF 171 (363)
Q Consensus 149 ELq~LE~qLe~sL~~IR~RK~qL 171 (363)
+--+-+.+|+.-|.+.++.|+++
T Consensus 88 q~y~q~s~Leddlsqt~aikeql 110 (333)
T KOG1853|consen 88 QFYQQESQLEDDLSQTHAIKEQL 110 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677777777888777776
No 53
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=25.90 E-value=3.2e+02 Score=28.63 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=39.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhcCCC------------------C----CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017948 110 STQTVEELTHQVRILQAQLTEVHQRLSYWSN------------------P----GNIESIEHLRQMENSLRESINQICLH 167 (363)
Q Consensus 110 ~s~~vE~L~~Ei~kLk~qle~lq~rlr~~~g------------------~----d~~LSlkELq~LE~qLe~sL~~IR~R 167 (363)
.+..++.|+.|++.||.++.+|+..+---.. | --.|+-+|+.++.+++...--+|.+-
T Consensus 23 ~a~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~~~~qqiAn~~lKv~~l 102 (514)
T PF11336_consen 23 TADQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDATEMRQQIANAQLKVESL 102 (514)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHHHHHHHHHhhhhhHHHH
Confidence 4556788899999999999999888742111 1 12367889988877776655554444
Q ss_pred H
Q 017948 168 K 168 (363)
Q Consensus 168 K 168 (363)
+
T Consensus 103 ~ 103 (514)
T PF11336_consen 103 E 103 (514)
T ss_pred h
Confidence 3
No 54
>PF11291 DUF3091: Protein of unknown function (DUF3091); InterPro: IPR021442 This eukaryotic family of proteins has no known function.
Probab=25.86 E-value=3.9e+02 Score=22.18 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CCCCHHHHHHHHHHHHHHHHH
Q 017948 113 TVEELTHQVRILQAQLTEVHQRLSYWSNPG-NIESIEHLRQMENSLRESINQ 163 (363)
Q Consensus 113 ~vE~L~~Ei~kLk~qle~lq~rlr~~~g~d-~~LSlkELq~LE~qLe~sL~~ 163 (363)
.+|.+......|+.....+|.....+.+-. +..+.++|..|+..|-.-...
T Consensus 19 v~E~l~~~~~~Lkq~f~~~qS~~~~mTC~~PeNI~~~D~~~L~~~I~~~q~~ 70 (100)
T PF11291_consen 19 VFEKLNRCSVKLKQYFDKLQSKKENMTCNRPENISEKDLNNLENSIQNYQSD 70 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 466777777777777777777777777766 678999999998877655443
No 55
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=25.35 E-value=3.9e+02 Score=27.73 Aligned_cols=29 Identities=21% Similarity=0.033 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017948 144 IESIEHLRQMENSLRESINQICLHKENFG 172 (363)
Q Consensus 144 ~LSlkELq~LE~qLe~sL~~IR~RK~qL~ 172 (363)
..-.+-++..|+.|....++.|+.=++.+
T Consensus 66 p~q~~~~~lnEkvLkdkrKK~rEtfer~~ 94 (487)
T KOG4672|consen 66 PFQIDVLRLNEKVLKDKRKKRRETFERGK 94 (487)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455788889999999888887655444
No 56
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.29 E-value=3.8e+02 Score=29.23 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017948 114 VEELTHQVRILQAQLTE 130 (363)
Q Consensus 114 vE~L~~Ei~kLk~qle~ 130 (363)
++.|..+++.|+..+++
T Consensus 431 ve~l~~e~~~L~~~~ee 447 (652)
T COG2433 431 VERLEEENSELKRELEE 447 (652)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 57
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=25.19 E-value=1.8e+02 Score=21.82 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=21.0
Q ss_pred CCCC-CCCCHHHHHHHHHHHHHHHHHHHHH
Q 017948 139 SNPG-NIESIEHLRQMENSLRESINQICLH 167 (363)
Q Consensus 139 ~g~d-~~LSlkELq~LE~qLe~sL~~IR~R 167 (363)
.|.| +.||++||..--..|+.-+.|++..
T Consensus 14 ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 14 IGEDLSLLSVEELEERIALLEAEIARLEAA 43 (59)
T ss_pred cCCCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445 6688888888878888777777654
No 58
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=24.91 E-value=1.7e+02 Score=28.14 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcC
Q 017948 113 TVEELTHQVRILQAQLTEVHQRLSYW 138 (363)
Q Consensus 113 ~vE~L~~Ei~kLk~qle~lq~rlr~~ 138 (363)
.+..|+.|+.+|++..-.|=.+.|++
T Consensus 108 ~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 108 TISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888877776677754
No 59
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.87 E-value=6.7e+02 Score=24.65 Aligned_cols=7 Identities=14% Similarity=0.297 Sum_probs=3.0
Q ss_pred HhHhhhh
Q 017948 174 QQLMSLE 180 (363)
Q Consensus 174 eql~~Lq 180 (363)
.+|..++
T Consensus 258 ~eI~e~~ 264 (325)
T PF08317_consen 258 AEIAEAE 264 (325)
T ss_pred HHHHHHH
Confidence 3444444
No 60
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.03 E-value=7e+02 Score=24.54 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017948 142 GNIESIEHLRQMENSLRESINQICLHKENFG 172 (363)
Q Consensus 142 d~~LSlkELq~LE~qLe~sL~~IR~RK~qL~ 172 (363)
.+..+.++|..+...|...-..|.++|..+.
T Consensus 203 ~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~ 233 (325)
T PF08317_consen 203 IESCDQEELEALRQELAEQKEEIEAKKKELA 233 (325)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788999998888888888877776653
No 61
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=23.91 E-value=5.6e+02 Score=23.40 Aligned_cols=67 Identities=9% Similarity=0.245 Sum_probs=44.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 017948 110 STQTVEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENFGKQQLMSL 179 (363)
Q Consensus 110 ~s~~vE~L~~Ei~kLk~qle~lq~rlr~~~g~d~~LSlkELq~LE~qLe~sL~~IR~RK~qL~~eql~~L 179 (363)
.+.++.....+|..|..++..++....- .+.--.-++++.|+..|.+.++.=-.|+..|..+-+-.|
T Consensus 103 ~~leL~s~~~ei~~L~~kI~~L~~~in~---~~k~~~n~~i~slk~EL~d~iKe~e~~emeLyyecMkkL 169 (181)
T PF04645_consen 103 KNLELKSIKKEIEILRLKISSLQKEINK---NKKKDLNEEIESLKSELNDLIKEREIREMELYYECMKKL 169 (181)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777766431 111011247889999999988887777778877666555
No 62
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=23.39 E-value=3.9e+02 Score=23.58 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 017948 112 QTVEELTHQVRILQAQLTEVHQR 134 (363)
Q Consensus 112 ~~vE~L~~Ei~kLk~qle~lq~r 134 (363)
+++++|..++..++.+++.++..
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~ 28 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQ 28 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788888887777655
No 63
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=23.08 E-value=1.2e+02 Score=21.66 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 017948 117 LTHQVRILQAQLTEVHQR 134 (363)
Q Consensus 117 L~~Ei~kLk~qle~lq~r 134 (363)
|++++..|+.++..||..
T Consensus 4 LrqQv~aL~~qv~~Lq~~ 21 (46)
T PF09006_consen 4 LRQQVEALQGQVQRLQAA 21 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 64
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=22.47 E-value=9.9e+02 Score=25.74 Aligned_cols=29 Identities=14% Similarity=0.085 Sum_probs=17.5
Q ss_pred hhhhhhcccCcceeecccCC-CC------CCccccCC
Q 017948 31 KARELSILCDIDIVLLMFSP-TG------RSTLFHGQ 60 (363)
Q Consensus 31 KA~ELSvLCDaeVALIIFSp-~G------Kl~~f~s~ 60 (363)
+||.|---- .+-...+|.. .| .||.|..+
T Consensus 78 ~ayyLPk~~-~e~YqfcYv~~~g~V~G~S~pFqf~~~ 113 (546)
T PF07888_consen 78 QAYYLPKDD-DEFYQFCYVDQKGEVRGASTPFQFRAP 113 (546)
T ss_pred CcccCCCCC-CCeEEEEEECCCccEEEecCCcccCCC
Confidence 688887643 3444445554 34 68888763
No 65
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=21.86 E-value=1.3e+02 Score=29.58 Aligned_cols=45 Identities=18% Similarity=0.460 Sum_probs=31.3
Q ss_pred eeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhc
Q 017948 7 KIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQ 73 (363)
Q Consensus 7 ~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~ 73 (363)
.|..|.|.+.|..+ +-| .||..|++ +.| .|-. +|.|++|++.|.+
T Consensus 25 n~~li~n~tqr~t~-~sR------------~L~Ecel~---~~p-----~Y~n-DpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTST-KSR------------LLAEIQRP---KNP-----HYHN-DPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccc-cce------------ehhhhccc---cCC-----CCCC-cHHHHHHHHHHhH
Confidence 45678887777665 223 47888875 444 4655 6999999999853
No 66
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=21.69 E-value=1.5e+02 Score=22.74 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017948 147 IEHLRQMENSLRESINQICLHKENF 171 (363)
Q Consensus 147 lkELq~LE~qLe~sL~~IR~RK~qL 171 (363)
-.++..+|+.|......+.+||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688999999999999999999775
No 67
>PF14282 FlxA: FlxA-like protein
Probab=21.42 E-value=4.6e+02 Score=21.52 Aligned_cols=51 Identities=27% Similarity=0.332 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017948 113 TVEELTHQVRILQAQLTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICLHKENF 171 (363)
Q Consensus 113 ~vE~L~~Ei~kLk~qle~lq~rlr~~~g~d~~LSlkELq~LE~qLe~sL~~IR~RK~qL 171 (363)
.++.|..+|..|+.+|..+... ..++.++-...-+.|..-|..|...-.++
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~~--------~~~~~e~k~~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQD--------SDLDAEQKQQQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666655432 23566665555555555555544443333
No 68
>PRK11519 tyrosine kinase; Provisional
Probab=20.64 E-value=1e+03 Score=26.13 Aligned_cols=35 Identities=9% Similarity=0.262 Sum_probs=17.3
Q ss_pred hHHHHHHHhccCHHHHHHHhHHHHHHHHHHHhhhh
Q 017948 64 IEEVIARFAQLTPQERAKRKLESLEALKKTFKKLD 98 (363)
Q Consensus 64 me~ILeRY~~~s~~er~k~~~e~~e~L~k~~kKL~ 98 (363)
+..+.+.|....-..+........++|.+++.+++
T Consensus 246 aN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~ 280 (719)
T PRK11519 246 LNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVR 280 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777765544433333334455555554443
No 69
>PRK00182 tatB sec-independent translocase; Provisional
Probab=20.41 E-value=78 Score=28.46 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=22.2
Q ss_pred hhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhcc
Q 017948 34 ELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQL 74 (363)
Q Consensus 34 ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~ 74 (363)
||-|++ =||||||.| .||.+.. ..+-..|..+++.
T Consensus 9 EllvIl--vIaLlVfGP-erLP~~~---r~lg~~ir~~R~~ 43 (160)
T PRK00182 9 EILLLL--IVGLIVIGP-ERLPRLI---EDVRAALLAARTA 43 (160)
T ss_pred HHHHHH--HHHHHhcCc-hHHHHHH---HHHHHHHHHHHHH
Confidence 444443 378999998 6777665 3566666666543
No 70
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.04 E-value=2.3e+02 Score=32.68 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017948 114 VEELTHQVRILQAQLTEVHQRLSYWSNPGNI--------ESIEHLRQMENSLRESINQICLHKENFG 172 (363)
Q Consensus 114 vE~L~~Ei~kLk~qle~lq~rlr~~~g~d~~--------LSlkELq~LE~qLe~sL~~IR~RK~qL~ 172 (363)
+.++..||.+|+..+...+....-|.-++.- -..+.+++||.+|+..-++|+...+.++
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666665554444333222210 1234555666666666666666655544
No 71
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=20.01 E-value=1.8e+02 Score=28.09 Aligned_cols=39 Identities=15% Similarity=0.428 Sum_probs=32.2
Q ss_pred HHHHHHhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 017948 128 LTEVHQRLSYWSNPGNIESIEHLRQMENSLRESINQICL 166 (363)
Q Consensus 128 le~lq~rlr~~~g~d~~LSlkELq~LE~qLe~sL~~IR~ 166 (363)
+-..+++...|.++=-+||+++++.+|......|+.+|.
T Consensus 220 fl~~HRq~fcW~DeW~gltmedIR~~E~~t~~~l~~~~~ 258 (258)
T cd08888 220 FTNFHRQVFCWLDKWHGLTMDDIRRMEDETKKELDEMRE 258 (258)
T ss_pred HHHHHHHHhhhHHHHcCCCHHHHHHHHHHHHHHHHHhhC
Confidence 344566777788777679999999999999999999873
No 72
>PRK10722 hypothetical protein; Provisional
Probab=20.00 E-value=4.1e+02 Score=25.60 Aligned_cols=10 Identities=10% Similarity=0.521 Sum_probs=4.2
Q ss_pred HHHHHHhccC
Q 017948 66 EVIARFAQLT 75 (363)
Q Consensus 66 ~ILeRY~~~s 75 (363)
.+|+|...++
T Consensus 127 ~~l~rl~~~~ 136 (247)
T PRK10722 127 QIVERLNAYS 136 (247)
T ss_pred HHHHHHhhcc
Confidence 3444444433
Done!