Query 017948
Match_columns 363
No_of_seqs 261 out of 1421
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 07:29:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 100.0 1.3E-36 4.6E-41 242.7 -2.1 87 2-90 1-87 (90)
2 1egw_A MADS box transcription 100.0 6.5E-36 2.2E-40 233.1 -0.5 73 2-76 1-73 (77)
3 1mnm_A Protein (MCM1 transcrip 100.0 6.4E-34 2.2E-38 231.0 -1.9 73 1-75 16-88 (100)
4 1hbx_A SRF, serum response fac 100.0 1.3E-33 4.6E-38 226.3 -3.7 70 1-72 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 4.1E-33 1.4E-37 227.6 -3.4 70 1-72 9-78 (103)
6 2oa5_A Hypothetical protein BQ 67.0 21 0.00072 28.9 7.4 58 111-168 7-67 (110)
7 3twe_A Alpha4H; unknown functi 51.2 24 0.00082 20.8 3.8 21 116-136 5-25 (27)
8 2l5g_A GPS2 protein, G protein 35.9 46 0.0016 21.7 3.7 18 113-130 9-26 (38)
9 2dfs_A Myosin-5A; myosin-V, in 26.2 3.4E+02 0.012 30.0 11.0 6 174-179 1037-1042(1080)
10 3ghg_A Fibrinogen alpha chain; 26.2 3E+02 0.01 28.1 9.5 17 144-160 172-188 (562)
11 4fi5_A Nucleoprotein; structur 25.7 1.2E+02 0.0042 24.4 5.5 58 110-168 20-82 (113)
12 1kaf_A Transcription regulator 25.6 20 0.0007 28.8 0.8 53 6-75 23-76 (108)
13 3na7_A HP0958; flagellar bioge 25.0 1.6E+02 0.0054 26.6 7.0 21 113-133 91-111 (256)
14 2l5g_B Putative uncharacterize 24.8 95 0.0032 20.7 3.8 24 113-136 10-33 (42)
15 1m1j_C Fibrinogen gamma chain; 24.6 5E+02 0.017 25.4 11.1 18 57-74 18-35 (409)
16 1g6u_A Domain swapped dimer; d 23.9 1.6E+02 0.0055 19.4 6.9 26 144-169 16-41 (48)
17 1m1j_B Fibrinogen beta chain; 23.2 5.6E+02 0.019 25.5 11.0 44 26-74 54-97 (464)
18 2yy0_A C-MYC-binding protein; 23.2 97 0.0033 21.5 3.9 20 113-132 20-39 (53)
19 2k48_A Nucleoprotein; viral pr 22.1 1.9E+02 0.0064 23.1 5.8 29 139-168 67-95 (107)
20 2v66_B Nuclear distribution pr 20.9 3.3E+02 0.011 21.8 8.6 20 116-135 39-58 (111)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=1.3e-36 Score=242.74 Aligned_cols=87 Identities=33% Similarity=0.682 Sum_probs=77.5
Q ss_pred CCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhccCHHHHHH
Q 017948 2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTPQERAK 81 (363)
Q Consensus 2 GR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~s~~er~k 81 (363)
||+||+|++|||.++|||||+|||+||||||+|||||||||||||||||+||+|+|++ ++|++||+||+++++..+.+
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s--~~~~~il~rY~~~~~~~~~~ 78 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTEYNEPHESR 78 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHHCCSCCCEE
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCC--CCHHHHHHHHHhcCcccccC
Confidence 8999999999999999999999999999999999999999999999999999999987 89999999999988655444
Q ss_pred HhHHHHHHH
Q 017948 82 RKLESLEAL 90 (363)
Q Consensus 82 ~~~e~~e~L 90 (363)
...+..+++
T Consensus 79 ~~~d~~e~~ 87 (90)
T 3p57_A 79 TNSDIVEAL 87 (90)
T ss_dssp CHHHHHHHH
T ss_pred ChHhHHHHH
Confidence 333444443
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=6.5e-36 Score=233.06 Aligned_cols=73 Identities=36% Similarity=0.741 Sum_probs=69.6
Q ss_pred CCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhccCH
Q 017948 2 GRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLTP 76 (363)
Q Consensus 2 GR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~s~ 76 (363)
||+||+|++|||.++|||||+|||+||||||+|||||||||||||||||+||+|+|++ ++|++||+||.+.++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s--~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCC--CCHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999999986 789999999998864
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.97 E-value=6.4e-34 Score=231.03 Aligned_cols=73 Identities=37% Similarity=0.551 Sum_probs=69.9
Q ss_pred CCCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhccC
Q 017948 1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLT 75 (363)
Q Consensus 1 MGR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~s 75 (363)
|||+||+|++|||.++|+|||+|||+||||||+||||||||+||||||||+||+|+|++ ++|+.||+||....
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s--ps~~~il~r~~G~~ 88 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST--PKFEPIVTQQEGRN 88 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC--TTTTHHHHSHHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecC--CCHHHHHHHhhCCc
Confidence 89999999999999999999999999999999999999999999999999999999987 79999999997543
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.97 E-value=1.3e-33 Score=226.28 Aligned_cols=70 Identities=37% Similarity=0.556 Sum_probs=67.8
Q ss_pred CCCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHh
Q 017948 1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFA 72 (363)
Q Consensus 1 MGR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~ 72 (363)
|||+||+|++|||.++|+|||+|||+||||||+||||||||+||||||||+||+|+|++ ++|+.||++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s--~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEEC--GGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecC--CCHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999987 89999999764
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.97 E-value=4.1e-33 Score=227.64 Aligned_cols=70 Identities=37% Similarity=0.556 Sum_probs=67.5
Q ss_pred CCCccceeEEecCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHh
Q 017948 1 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFA 72 (363)
Q Consensus 1 MGR~Ki~IkrIen~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~ 72 (363)
|||+||+|++|||.++|+|||+|||+||||||+||||||||+||||||||+||+|+|++ ++|..||+++.
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s--~~~~~vi~~~~ 78 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSET 78 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEEC--GGGGGGTSSHH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecC--ccHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999987 89999998754
No 6
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=67.01 E-value=21 Score=28.86 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017948 111 TQTVEELTHQVRILQAQLTEVHQRLSY---WSNPGNIESIEHLRQMENSLRESINQICLHK 168 (363)
Q Consensus 111 s~~vE~L~~Ei~kLk~qle~lq~rlr~---~~g~d~~LSlkELq~LE~qLe~sL~~IR~RK 168 (363)
..++|+|..++.+|+-++..|.+.++. -.+.+..|+-.+=+.+--+.-.+|...-++|
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~K 67 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRK 67 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999998874 2344578999888887777766666655555
No 7
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=51.18 E-value=24 Score=20.76 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 017948 116 ELTHQVRILQAQLTEVHQRLS 136 (363)
Q Consensus 116 ~L~~Ei~kLk~qle~lq~rlr 136 (363)
+|..|+..|++++..+.+.+|
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444444443
No 8
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=35.91 E-value=46 Score=21.69 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 017948 113 TVEELTHQVRILQAQLTE 130 (363)
Q Consensus 113 ~vE~L~~Ei~kLk~qle~ 130 (363)
++++.+.+|.+|+.+++.
T Consensus 9 TLeEtkeQi~~l~~kl~~ 26 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLA 26 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=26.21 E-value=3.4e+02 Score=30.01 Aligned_cols=6 Identities=17% Similarity=0.102 Sum_probs=2.3
Q ss_pred HhHhhh
Q 017948 174 QQLMSL 179 (363)
Q Consensus 174 eql~~L 179 (363)
+|+++|
T Consensus 1037 qq~~~l 1042 (1080)
T 2dfs_A 1037 TEKEEL 1042 (1080)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.17 E-value=3e+02 Score=28.06 Aligned_cols=17 Identities=6% Similarity=0.167 Sum_probs=13.2
Q ss_pred CCCHHHHHHHHHHHHHH
Q 017948 144 IESIEHLRQMENSLRES 160 (363)
Q Consensus 144 ~LSlkELq~LE~qLe~s 160 (363)
.++++..+.+++||+..
T Consensus 172 ~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 172 EVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHHHHHHHH
Confidence 36788888888888876
No 11
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=25.68 E-value=1.2e+02 Score=24.41 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=30.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhh-----cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017948 110 STQTVEELTHQVRILQAQLTEVHQRLS-----YWSNPGNIESIEHLRQMENSLRESINQICLHK 168 (363)
Q Consensus 110 ~s~~vE~L~~Ei~kLk~qle~lq~rlr-----~~~g~d~~LSlkELq~LE~qLe~sL~~IR~RK 168 (363)
.+..+++|+.++.....+|...+.++. +-.+||+ +|..-|+.-...+...-.+|..-|
T Consensus 20 ~~~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDe-vNK~tl~~R~~~Vs~lq~KiaeLK 82 (113)
T 4fi5_A 20 GSMTMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDE-LNKRTLTDREGVAVSIQAKIDELK 82 (113)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777766555543 2245553 344444444333333334444443
No 12
>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} SCOP: d.199.1.1
Probab=25.56 E-value=20 Score=28.83 Aligned_cols=53 Identities=26% Similarity=0.377 Sum_probs=38.2
Q ss_pred ceeEEe-cCCCCcceeecccccchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhccC
Q 017948 6 LKIKRL-ESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQLT 75 (363)
Q Consensus 6 i~IkrI-en~~~RqvTFsKRR~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~s 75 (363)
+++|.+ ++.+|=.|+|.||-.|+-+ .| ...+|+.=.|+. .-.++++..|..+-
T Consensus 23 ie~K~~~~~RSN~~i~f~KRt~GiRq--fE-------------i~n~G~fRI~gY--k~se~~~~~f~slG 76 (108)
T 1kaf_A 23 FVLKKVEIYRSNYLAILEKRTNGIRN--FE-------------INNNGNMRIFGY--KMMEHHIQKFTDIG 76 (108)
T ss_dssp CCEEEEEEETTEEEEEEEEEETTEEE--EE-------------ECTTSEEEEEEE--SCCHHHHHHHHTTT
T ss_pred ceeeeeEeeccceEEeeecccCceeE--EE-------------EecCCcEEEEEe--cCCHHHHHHHHhcC
Confidence 778877 8999999999999999843 22 235676666654 45677778777653
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.04 E-value=1.6e+02 Score=26.55 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 017948 113 TVEELTHQVRILQAQLTEVHQ 133 (363)
Q Consensus 113 ~vE~L~~Ei~kLk~qle~lq~ 133 (363)
.+..|..++..++.++..++.
T Consensus 91 E~~aL~kEie~~~~~i~~lE~ 111 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANR 111 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333
No 14
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.77 E-value=95 Score=20.73 Aligned_cols=24 Identities=4% Similarity=0.437 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 017948 113 TVEELTHQVRILQAQLTEVHQRLS 136 (363)
Q Consensus 113 ~vE~L~~Ei~kLk~qle~lq~rlr 136 (363)
.++....||.+.+.++.+++++++
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777766653
No 15
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=24.55 E-value=5e+02 Score=25.35 Aligned_cols=18 Identities=6% Similarity=0.266 Sum_probs=13.7
Q ss_pred ccCCCCchHHHHHHHhcc
Q 017948 57 FHGQRSNIEEVIARFAQL 74 (363)
Q Consensus 57 f~s~~ssme~ILeRY~~~ 74 (363)
+|.+-..+.++|.+|+.-
T Consensus 18 ~CPT~C~i~d~L~k~e~~ 35 (409)
T 1m1j_C 18 YCPTTCGIADFFNKYRLT 35 (409)
T ss_dssp EEECTTHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHhc
Confidence 343357899999999873
No 16
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=23.94 E-value=1.6e+02 Score=19.41 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017948 144 IESIEHLRQMENSLRESINQICLHKE 169 (363)
Q Consensus 144 ~LSlkELq~LE~qLe~sL~~IR~RK~ 169 (363)
..|.+||-.||..|...-+++..-|.
T Consensus 16 gfspeelaaleselqalekklaalks 41 (48)
T 1g6u_A 16 GFSPEELAALESELQALEKKLAALKS 41 (48)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888988888776665555544443
No 17
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.19 E-value=5.6e+02 Score=25.51 Aligned_cols=44 Identities=7% Similarity=0.021 Sum_probs=22.5
Q ss_pred cchhhhhhhhhcccCcceeecccCCCCCCccccCCCCchHHHHHHHhcc
Q 017948 26 NGILKKARELSILCDIDIVLLMFSPTGRSTLFHGQRSNIEEVIARFAQL 74 (363)
Q Consensus 26 ~GL~KKA~ELSvLCDaeVALIIFSp~GKl~~f~s~~ssme~ILeRY~~~ 74 (363)
.|+-||.-|.. =||.=|.+.- +.+-.+|.+...+.+.|.+|+..
T Consensus 54 ~~~~~~~~~~~--~~a~~c~~~~---~~~G~~CPTtC~l~D~L~k~q~~ 97 (464)
T 1m1j_B 54 KQAMKKGPIIY--PDAGGCKHPL---DELGVLCPTGCELQTTLLKQEKT 97 (464)
T ss_dssp ---------CC--CCCSCEECSS---TTTCEEEECTTHHHHHHHHHHHH
T ss_pred chhhccCcccC--CCCCCccccC---CCccCcCCCccHHHHHHHHhhhh
Confidence 35567777766 6777776643 44433444457888889888753
No 18
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.15 E-value=97 Score=21.52 Aligned_cols=20 Identities=10% Similarity=0.213 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 017948 113 TVEELTHQVRILQAQLTEVH 132 (363)
Q Consensus 113 ~vE~L~~Ei~kLk~qle~lq 132 (363)
.+|.|+.|...|+.+++.+.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~ 39 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIV 39 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555443
No 19
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=22.13 E-value=1.9e+02 Score=23.08 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=11.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017948 139 SNPGNIESIEHLRQMENSLRESINQICLHK 168 (363)
Q Consensus 139 ~g~d~~LSlkELq~LE~qLe~sL~~IR~RK 168 (363)
.+||+ ++..-|++-...+...-.+|.+-|
T Consensus 67 ~DPDe-vNK~tl~~R~~~Vsalq~KiaeLK 95 (107)
T 2k48_A 67 VDPDD-VNKSTLQNRRAAVSTLETKLGELK 95 (107)
T ss_dssp HCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34552 344444443333333333333333
No 20
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=20.89 E-value=3.3e+02 Score=21.83 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 017948 116 ELTHQVRILQAQLTEVHQRL 135 (363)
Q Consensus 116 ~L~~Ei~kLk~qle~lq~rl 135 (363)
.|+.++..|+...+.++..+
T Consensus 39 ~Lq~El~~lr~~~~~l~~~i 58 (111)
T 2v66_B 39 VLEDDLSQTRAIKEQLHKYV 58 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
Done!